BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5021
(1021 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 608 bits (1568), Expect = e-174, Method: Compositional matrix adjust.
Identities = 299/670 (44%), Positives = 437/670 (65%), Gaps = 22/670 (3%)
Query: 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVS 67
+RNIGI AHVDAGKTTTTER+LFY+G +HK+GEVH G TDWM QEQERGITITSA+V+
Sbjct: 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVT 72
Query: 68 IFWEVNKFKY---MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
FW+ ++ +Y +N+IDTPGHVDFTIEVERSLRVLDGAV++ C +SG++PQ+ETVW Q
Sbjct: 73 TFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ 132
Query: 125 SQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKK 184
+ KY VP++++VNKMDR GAN+ + IKK+ +P+ IG EEN+ G VD+I K
Sbjct: 133 ANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMK 192
Query: 185 SFFWKENSIII----KNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYI-NNNYSINDIK 239
+ +W ++ + + I + + + M+E + +E + KY+ S +IK
Sbjct: 193 AIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEAEIK 252
Query: 240 NSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV---------DFKNNDYN 290
+R L +I+P +CGSS KNKG+ +L+++ +YLP+P ++ D D
Sbjct: 253 EGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDER 312
Query: 291 INLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFAN 350
++ F SL FKI DPF+G+L+F R+YSG + GD V NS K KE++ R+++M AN
Sbjct: 313 HADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHAN 372
Query: 351 SKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKNDQE 410
+++I + GDI ++G+K+ +TGDTLCS+ + I LE K DQE
Sbjct: 373 QREEIKEVRAGDIAALIGMKDVTTGDTLCSIEKPIILERMDFPEPVISVAVEPKTKADQE 432
Query: 411 KLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVS 470
K+ L K +EDPS + + +G+TI+SGMGELHL+IIVDR+ +E ++ I KPQV+
Sbjct: 433 KMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFGVEANIGKPQVA 492
Query: 471 YKESIKKI-VTQEGKYIKQSGGKGQYGHVVIRIEPISLENK----ENFIFKSEIIGGSIP 525
Y+E+I K V EGK+++QSGG+GQ+GH IR ++ K E +F++E++GG +P
Sbjct: 493 YRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFENEVVGGVVP 552
Query: 526 KEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXX 585
KE+IPAI+KGI Q+ GVV GYP+I +K + +GS+H VDS+E
Sbjct: 553 KEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQ 612
Query: 586 XXXSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGY 645
+LEPIMKVEV P +++G V+GD+N++RG+I + D + K+I + +PL E+FGY
Sbjct: 613 KGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTVSGKVIRAEVPLGEMFGY 672
Query: 646 STDLRSNTKG 655
+TD+RS ++G
Sbjct: 673 ATDVRSMSQG 682
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 15/147 (10%)
Query: 655 GTIGHVDHGKTTLTAAL---TKVSSEIYGGEVR-AFDTIDNAPEEKERGITISTSHVE-- 708
G HVD GKTT T + T V+ ++ GEV T D +E+ERGITI+++ V
Sbjct: 17 GICAHVDAGKTTTTERVLFYTGVNHKL--GEVHDGAATTDWMVQEQERGITITSAAVTTF 74
Query: 709 YESENKHYAH-----VDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLAR 763
++ Y + +D PGH D+ + +DGA++V G PQ+ A
Sbjct: 75 WKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQAN 134
Query: 764 QVGVPNIVVFLNKADCVQDKELLDLVE 790
+ GVP I V++NK D Q L +VE
Sbjct: 135 KYGVPRI-VYVNKMDR-QGANFLRVVE 159
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 598 bits (1542), Expect = e-171, Method: Compositional matrix adjust.
Identities = 300/670 (44%), Positives = 430/670 (64%), Gaps = 19/670 (2%)
Query: 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA 64
+ +RNIGI AH+DAGKTTTTERILFY+G +HKIGEVH G DWM+QEQERGITITSA
Sbjct: 6 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSA 65
Query: 65 SVSIFWEVNKFKY---MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETV 121
+ + FW +Y INIIDTPGHVDFTIEVERS+RVLDGAV++ CA G+QPQ+ETV
Sbjct: 66 ATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETV 125
Query: 122 WFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDII 181
W Q+ KYKVP++ FVNKMDR+GAN+ + IK + +P+ IG EE++ G+VD++
Sbjct: 126 WRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLV 185
Query: 182 NKKSFFWKEN----SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSIN 236
K+ W + + ++I D + + +++ ++E+ + E +EKY+ +
Sbjct: 186 KMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEA 245
Query: 237 DIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV--------DFKNND 288
+IK ++R+ VL N+II + CGS+ KNKG++ +L+++ +YLPSP DV D K+
Sbjct: 246 EIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTP 305
Query: 289 YNINLNSNK-FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRM 347
+ + ++ F +L FKI DPF+G+L+F R+YSG + GD V NS K +E+ RI++M
Sbjct: 306 AERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQM 365
Query: 348 FANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKN 407
AN +++I + GDI +GLK+ +TGDTLC I LE K
Sbjct: 366 HANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIAVEPKTKA 425
Query: 408 DQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKP 467
DQEK+ L + KEDPS + + + +TI++GMGELHL+IIVDR+ +E N++ + KP
Sbjct: 426 DQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKP 485
Query: 468 QVSYKESIKKIVTQ-EGKYIKQSGGKGQYGHVVIRIEPISL-ENKENFIFKSEIIGGSIP 525
QV+Y+E+I++ VT EGK+ KQSGG+GQYGHVVI + P+ N + + F ++I GG IP
Sbjct: 486 QVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIP 545
Query: 526 KEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXX 585
E+IPA++KGI Q+ G + GYPV+ + + L GS+H VDSSE
Sbjct: 546 GEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFK 605
Query: 586 XXXSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGY 645
+LEPIMKVEV P E G V+GD++++RG++ I++ +PL E+FGY
Sbjct: 606 KAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGY 665
Query: 646 STDLRSNTKG 655
+T LRS TKG
Sbjct: 666 ATQLRSLTKG 675
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 655 GTIGHVDHGKTTLTAAL---TKVSSEIYGGEVR-AFDTIDNAPEEKERGITISTSHVE-- 708
G H+D GKTT T + T V+ +I GEV T+D +E+ERGITI+++
Sbjct: 13 GISAHIDAGKTTTTERILFYTGVNHKI--GEVHDGAATMDWMEQEQERGITITSAATTAF 70
Query: 709 YESENKHYAH-----VDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLAR 763
+ K Y +D PGH D+ + +DGA++V AV G PQ+ A
Sbjct: 71 WSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQAN 130
Query: 764 QVGVPNIVVFLNKAD 778
+ VP I F+NK D
Sbjct: 131 KYKVPRI-AFVNKMD 144
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 598 bits (1541), Expect = e-171, Method: Compositional matrix adjust.
Identities = 300/670 (44%), Positives = 430/670 (64%), Gaps = 19/670 (2%)
Query: 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA 64
+ +RNIGI AH+DAGKTTTTERILFY+G +HKIGEVH G DWM+QEQERGITITSA
Sbjct: 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSA 66
Query: 65 SVSIFWEVNKFKY---MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETV 121
+ + FW +Y INIIDTPGHVDFTIEVERS+RVLDGAV++ CA G+QPQ+ETV
Sbjct: 67 ATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETV 126
Query: 122 WFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDII 181
W Q+ KYKVP++ FVNKMDR+GAN+ + IK + +P+ IG EE++ G+VD++
Sbjct: 127 WRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLV 186
Query: 182 NKKSFFWKEN----SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSIN 236
K+ W + + ++I D + + +++ ++E+ + E +EKY+ +
Sbjct: 187 KMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEA 246
Query: 237 DIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV--------DFKNND 288
+IK ++R+ VL N+II + CGS+ KNKG++ +L+++ +YLPSP DV D K+
Sbjct: 247 EIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTP 306
Query: 289 YNINLNSNK-FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRM 347
+ + ++ F +L FKI DPF+G+L+F R+YSG + GD V NS K +E+ RI++M
Sbjct: 307 AERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQM 366
Query: 348 FANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKN 407
AN +++I + GDI +GLK+ +TGDTLC I LE K
Sbjct: 367 HANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIAVEPKTKA 426
Query: 408 DQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKP 467
DQEK+ L + KEDPS + + + +TI++GMGELHL+IIVDR+ +E N++ + KP
Sbjct: 427 DQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKP 486
Query: 468 QVSYKESIKKIVTQ-EGKYIKQSGGKGQYGHVVIRIEPISL-ENKENFIFKSEIIGGSIP 525
QV+Y+E+I++ VT EGK+ KQSGG+GQYGHVVI + P+ N + + F ++I GG IP
Sbjct: 487 QVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIP 546
Query: 526 KEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXX 585
E+IPA++KGI Q+ G + GYPV+ + + L GS+H VDSSE
Sbjct: 547 GEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFK 606
Query: 586 XXXSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGY 645
+LEPIMKVEV P E G V+GD++++RG++ I++ +PL E+FGY
Sbjct: 607 KAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGY 666
Query: 646 STDLRSNTKG 655
+T LRS TKG
Sbjct: 667 ATQLRSLTKG 676
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 655 GTIGHVDHGKTTLTAAL---TKVSSEIYGGEVR-AFDTIDNAPEEKERGITISTSHVE-- 708
G H+D GKTT T + T V+ +I GEV T+D +E+ERGITI+++
Sbjct: 14 GISAHIDAGKTTTTERILFYTGVNHKI--GEVHDGAATMDWMEQEQERGITITSAATTAF 71
Query: 709 YESENKHYAH-----VDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLAR 763
+ K Y +D PGH D+ + +DGA++V AV G PQ+ A
Sbjct: 72 WSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQAN 131
Query: 764 QVGVPNIVVFLNKAD 778
+ VP I F+NK D
Sbjct: 132 KYKVPRI-AFVNKMD 145
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 583 bits (1502), Expect = e-166, Method: Compositional matrix adjust.
Identities = 297/671 (44%), Positives = 431/671 (64%), Gaps = 22/671 (3%)
Query: 1 MKNKVLY----FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQE 56
M KV Y RNIGI AH+DAGKTTTTERIL+Y+G HKIGEVH G D+M+QE+E
Sbjct: 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERE 60
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQP 116
RGITIT+A + FW+ ++ INIIDTPGHVDFTIEVERS+RVLDGA+++ +S G++P
Sbjct: 61 RGITITAAVTTCFWKDHR----INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEP 116
Query: 117 QTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEG 176
Q+ETVW Q++KYKVP++ F NKMD+ GA+ I ++++ + + IG E+ + G
Sbjct: 117 QSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSG 176
Query: 177 IVDIINKKSFFWKEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYI-NNN 232
I+D++ K++ + + I I ++ L Y+E ++E ++ DE + KY+
Sbjct: 177 IIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEE 236
Query: 233 YSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVD------FKN 286
+ ++ +IRK + KI P+ GS+LKNKG++ LL+++ +YLPSP D+ +
Sbjct: 237 PTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEG 296
Query: 287 NDYNINLNSN-KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRIL 345
I+ + N +L FKI DP++G L+FIR+YSG + G VYN+TK KE++ R+L
Sbjct: 297 EVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLL 356
Query: 346 RMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSL-SENIQLENXXXXXXXXXXXXXXX 404
RM AN ++++ + GD+ +VGLKE+ TGDTL + + LE+
Sbjct: 357 RMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPK 416
Query: 405 FKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKI 464
K DQEKL L + +EDP+ +S + TG+TI+SGMGELHLEIIVDR+ +E + +
Sbjct: 417 TKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANV 476
Query: 465 SKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSI 524
KPQV+Y+E+I K V EGK+I+Q+GG+GQYGHV I++EP L F F + I+GG I
Sbjct: 477 GKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEP--LPRGSGFEFVNAIVGGVI 534
Query: 525 PKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXX 584
PKE+IPA++KGI + G ++G+PV+ IKV L +GS+H VDSSE
Sbjct: 535 PKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAV 594
Query: 585 XXXXSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFG 644
ILEPIM+VEV P E++G V+GD+N +RG I + N ++I +++PL E+FG
Sbjct: 595 QKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFG 654
Query: 645 YSTDLRSNTKG 655
Y+TDLRS T+G
Sbjct: 655 YATDLRSKTQG 665
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYG-GEVR-AFDTIDNAPEEKERGITISTSHVEYESE 712
G H+D GKTT T + + I+ GEV T+D +E+ERGITI+ + +
Sbjct: 16 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK 75
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
+ +D PGH D+ + +DGAI+V + G PQ+ A + VP I
Sbjct: 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-A 134
Query: 773 FLNKAD 778
F NK D
Sbjct: 135 FANKMD 140
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 582 bits (1500), Expect = e-166, Method: Compositional matrix adjust.
Identities = 297/671 (44%), Positives = 431/671 (64%), Gaps = 22/671 (3%)
Query: 1 MKNKVLY----FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQE 56
M KV Y RNIGI AH+DAGKTTTTERIL+Y+G HKIGEVH G D+M+QE+E
Sbjct: 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERE 60
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQP 116
RGITIT+A + FW+ ++ INIIDTPGHVDFTIEVERS+RVLDGA+++ +S G++P
Sbjct: 61 RGITITAAVTTCFWKDHR----INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEP 116
Query: 117 QTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEG 176
Q+ETVW Q++KYKVP++ F NKMD+ GA+ I ++++ + + IG E+ + G
Sbjct: 117 QSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSG 176
Query: 177 IVDIINKKSFFWKEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYI-NNN 232
I+D++ K++ + + I I ++ L Y+E ++E ++ DE + KY+
Sbjct: 177 IIDVLRMKAYTYGNDLGTDIREIPIPEEYLDNAREYHEKLVEVAADFDENIMLKYLEGEE 236
Query: 233 YSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVD------FKN 286
+ ++ +IRK + KI P+ GS+LKNKG++ LL+++ +YLPSP D+ +
Sbjct: 237 PTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEG 296
Query: 287 NDYNINLNSN-KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRIL 345
I+ + N +L FKI DP++G L+FIR+YSG + G VYN+TK KE++ R+L
Sbjct: 297 EVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLL 356
Query: 346 RMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSL-SENIQLENXXXXXXXXXXXXXXX 404
RM AN ++++ + GD+ +VGLKE+ TGDTL + + LE+
Sbjct: 357 RMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPK 416
Query: 405 FKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKI 464
K DQEKL L + +EDP+ +S + TG+TI+SGMGELHLEIIVDR+ +E + +
Sbjct: 417 TKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANV 476
Query: 465 SKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSI 524
KPQV+Y+E+I K V EGK+I+Q+GG+GQYGHV I++EP L F F + I+GG I
Sbjct: 477 GKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEP--LPRGSGFEFVNAIVGGVI 534
Query: 525 PKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXX 584
PKE+IPA++KGI + G ++G+PV+ IKV L +GS+H VDSSE
Sbjct: 535 PKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAV 594
Query: 585 XXXXSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFG 644
ILEPIM+VEV P E++G V+GD+N +RG I + N ++I +++PL E+FG
Sbjct: 595 QKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFG 654
Query: 645 YSTDLRSNTKG 655
Y+TDLRS T+G
Sbjct: 655 YATDLRSKTQG 665
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYG-GEVR-AFDTIDNAPEEKERGITISTSHVEYESE 712
G H+D GKTT T + + I+ GEV T+D +E+ERGITI+ + +
Sbjct: 16 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK 75
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
+ +D PGH D+ + +DGAI+V + G PQ+ A + VP I
Sbjct: 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-A 134
Query: 773 FLNKAD 778
F NK D
Sbjct: 135 FANKMD 140
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 581 bits (1498), Expect = e-166, Method: Compositional matrix adjust.
Identities = 296/671 (44%), Positives = 429/671 (63%), Gaps = 22/671 (3%)
Query: 1 MKNKVLY----FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQE 56
M KV Y RNIGI AH+DAGKTTTTERIL+Y+G HKIGEVH G D+M+QE+E
Sbjct: 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERE 60
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQP 116
RGITIT+A + FW+ ++ INIID PGHVDFTIEVERS+RVLDGA+++ +S G++P
Sbjct: 61 RGITITAAVTTCFWKDHR----INIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEP 116
Query: 117 QTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEG 176
Q+ETVW Q++KYKVP++ F NKMD+ GA+ I ++++ + + IG E+ + G
Sbjct: 117 QSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSG 176
Query: 177 IVDIINKKSFFWKEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNY 233
I+D++ K++ + + I I ++ L Y+E ++E ++ DE + KY+
Sbjct: 177 IIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEE 236
Query: 234 SIND-IKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDF------KN 286
+ + +IRK + KI P+ GS+LKNKG++ LL+++ +YLPSP D+ +
Sbjct: 237 PTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEG 296
Query: 287 NDYNINLNSN-KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRIL 345
I+ + N +L FKI DP++G L+FIR+YSG + G VYN+TK KE++ R+L
Sbjct: 297 EVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLL 356
Query: 346 RMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSL-SENIQLENXXXXXXXXXXXXXXX 404
RM AN ++++ + GD+ +VGLKE+ TGDTL + + LE+
Sbjct: 357 RMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPK 416
Query: 405 FKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKI 464
K DQEKL L + +EDP+ +S + TG+TI+SGMGELHLEIIVDR+ +E + +
Sbjct: 417 TKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANV 476
Query: 465 SKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSI 524
KPQV+Y+E+I K V EGK+I+Q+GG+GQYGHV I++EP L F F + I+GG I
Sbjct: 477 GKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEP--LPRGSGFEFVNAIVGGVI 534
Query: 525 PKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXX 584
PKE+IPA++KGI + G ++G+PV+ IKV L +GS+H VDSSE
Sbjct: 535 PKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAV 594
Query: 585 XXXXSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFG 644
ILEPIM+VEV P E++G V+GD+N +RG I + N ++I +++PL E+FG
Sbjct: 595 QKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFG 654
Query: 645 YSTDLRSNTKG 655
Y+TDLRS T+G
Sbjct: 655 YATDLRSKTQG 665
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYG-GEVR-AFDTIDNAPEEKERGITISTSHVEYESE 712
G H+D GKTT T + + I+ GEV T+D +E+ERGITI+ + +
Sbjct: 16 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK 75
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
+ +D PGH D+ + +DGAI+V + G PQ+ A + VP I
Sbjct: 76 DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-A 134
Query: 773 FLNKAD 778
F NK D
Sbjct: 135 FANKMD 140
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 580 bits (1494), Expect = e-165, Method: Compositional matrix adjust.
Identities = 296/671 (44%), Positives = 430/671 (64%), Gaps = 22/671 (3%)
Query: 1 MKNKVLY----FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQE 56
M KV Y RNIGI AH+DAGKTTTTERIL+Y+G HKIGEVH G D+M+QE+E
Sbjct: 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERE 60
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQP 116
RGITIT+A + FW+ ++ INIIDTPGHVDFTIEVERS+RVLDGA+++ +S G++P
Sbjct: 61 RGITITAAVTTCFWKDHR----INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEP 116
Query: 117 QTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEG 176
Q+ETVW Q++KYKVP++ F NKMD+ GA+ I ++++ + + IG E+ + G
Sbjct: 117 QSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSG 176
Query: 177 IVDIINKKSFFWKEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYI-NNN 232
I+D++ K++ + + I I ++ L Y+E ++E ++ DE + KY+
Sbjct: 177 IIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEE 236
Query: 233 YSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVD------FKN 286
+ ++ +IRK + KI P+ GS+LKNKG++ LL+++ +YLPSP D+ +
Sbjct: 237 PTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEG 296
Query: 287 NDYNINLNSN-KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRIL 345
I+ + N +L FKI DP++G L+FIR+YSG + G VYN+TK KE++ R+L
Sbjct: 297 EVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLL 356
Query: 346 RMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSL-SENIQLENXXXXXXXXXXXXXXX 404
RM AN ++++ + GD+ +VGLKE+ TGDTL + + LE+
Sbjct: 357 RMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPK 416
Query: 405 FKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKI 464
K DQEKL L + +EDP+ +S + TG+TI+SGMGELHLEIIVDR+ +E + +
Sbjct: 417 TKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANV 476
Query: 465 SKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSI 524
KPQV+Y+E+I K V EGK+I+Q+GG+GQYGHV I++EP L F F + I+GG I
Sbjct: 477 GKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEP--LPRGSGFEFVNAIVGGVI 534
Query: 525 PKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXX 584
PKE+IPA++KGI + G ++G+PV+ IKV L +GS+ VDSSE
Sbjct: 535 PKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAGSMAIKEAV 594
Query: 585 XXXXSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFG 644
ILEPIM+VEV P E++G V+GD+N +RG I + N ++I +++PL E+FG
Sbjct: 595 QKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFG 654
Query: 645 YSTDLRSNTKG 655
Y+TDLRS T+G
Sbjct: 655 YATDLRSKTQG 665
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYG-GEVR-AFDTIDNAPEEKERGITISTSHVEYESE 712
G H+D GKTT T + + I+ GEV T+D +E+ERGITI+ + +
Sbjct: 16 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK 75
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
+ +D PGH D+ + +DGAI+V + G PQ+ A + VP I
Sbjct: 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-A 134
Query: 773 FLNKAD 778
F NK D
Sbjct: 135 FANKMD 140
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 579 bits (1493), Expect = e-165, Method: Compositional matrix adjust.
Identities = 296/671 (44%), Positives = 430/671 (64%), Gaps = 22/671 (3%)
Query: 1 MKNKVLY----FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQE 56
M KV Y RNI I AH+DAGKTTTTERIL+Y+G HKIGEVH G D+M+QE+E
Sbjct: 1 MAVKVEYDLKRLRNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERE 60
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQP 116
RGITIT+A + FW+ ++ INIIDTPGHVDFTIEVERS+RVLDGA+++ +S G++P
Sbjct: 61 RGITITAAVTTCFWKDHR----INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEP 116
Query: 117 QTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEG 176
Q+ETVW Q++KYKVP++ F NKMD+ GA+ I ++++ + + IG E+ + G
Sbjct: 117 QSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSG 176
Query: 177 IVDIINKKSFFWKEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYI-NNN 232
I+D++ K++ + + I I ++ L Y+E ++E ++ DE + KY+
Sbjct: 177 IIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEE 236
Query: 233 YSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVD------FKN 286
+ ++ +IRK + KI P+ GS+LKNKG++ LL+++ +YLPSP D+ +
Sbjct: 237 PTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEG 296
Query: 287 NDYNINLNSN-KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRIL 345
I+ + N +L FKI DP++G L+FIR+YSG + G VYN+TK KE++ R+L
Sbjct: 297 EVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLL 356
Query: 346 RMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSL-SENIQLENXXXXXXXXXXXXXXX 404
RM AN ++++ + GD+ +VGLKE+ TGDTL + + LE+
Sbjct: 357 RMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPK 416
Query: 405 FKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKI 464
K DQEKL L + +EDP+ +S + TG+TI+SGMGELHLEIIVDR+ +E + +
Sbjct: 417 TKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANV 476
Query: 465 SKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSI 524
KPQV+Y+E+I K V EGK+I+Q+GG+GQYGHV I++EP L F F + I+GG I
Sbjct: 477 GKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEP--LPRGSGFEFVNAIVGGVI 534
Query: 525 PKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXX 584
PKE+IPA++KGI + G ++G+PV+ IKV L +GS+H VDSSE
Sbjct: 535 PKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAV 594
Query: 585 XXXXSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFG 644
ILEPIM+VEV P E++G V+GD+N +RG I + N ++I +++PL E+FG
Sbjct: 595 QKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFG 654
Query: 645 YSTDLRSNTKG 655
Y+TDLRS T+G
Sbjct: 655 YATDLRSKTQG 665
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 658 GHVDHGKTTLTAALTKVSSEIYG-GEVR-AFDTIDNAPEEKERGITISTSHVEYESENKH 715
H+D GKTT T + + I+ GEV T+D +E+ERGITI+ + ++
Sbjct: 19 AHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHR 78
Query: 716 YAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLN 775
+D PGH D+ + +DGAI+V + G PQ+ A + VP I F N
Sbjct: 79 INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFAN 137
Query: 776 KAD 778
K D
Sbjct: 138 KMD 140
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 579 bits (1493), Expect = e-165, Method: Compositional matrix adjust.
Identities = 296/671 (44%), Positives = 430/671 (64%), Gaps = 22/671 (3%)
Query: 1 MKNKVLY----FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQE 56
M KV Y RNIGI AH+DAGKTTTTERIL+Y+G HKIGEVH G D+M+QE+E
Sbjct: 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERE 60
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQP 116
RGITIT+A + FW+ ++ INIIDTPGHVDFTIEVERS+RVLDGA+++ +S G++P
Sbjct: 61 RGITITAAVTTCFWKDHR----INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEP 116
Query: 117 QTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEG 176
Q+ETVW Q++KYKVP++ F NKMD+ GA+ I ++++ + + IG E+ + G
Sbjct: 117 QSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSG 176
Query: 177 IVDIINKKSFFWKEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYI-NNN 232
I+D++ K++ + + I I ++ L Y+E ++E ++ DE + KY+
Sbjct: 177 IIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEE 236
Query: 233 YSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVD------FKN 286
+ ++ +IRK + KI P+ GS+LKNKG++ LL+++ +YLPSP D+ +
Sbjct: 237 PTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEG 296
Query: 287 NDYNINLNSN-KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRIL 345
I+ + N +L FKI DP++G L+FIR+YSG + G VYN+TK KE++ R+L
Sbjct: 297 EVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLL 356
Query: 346 RMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSL-SENIQLENXXXXXXXXXXXXXXX 404
RM AN ++++ + GD+ +VGLKE+ TGDTL + + LE+
Sbjct: 357 RMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPK 416
Query: 405 FKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKI 464
K DQEKL L + +EDP+ +S + TG+TI+SGMGELHLEIIVDR+ +E + +
Sbjct: 417 TKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANV 476
Query: 465 SKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSI 524
KPQV+Y+E+I K V EGK+I+Q+GG+GQYGHV I++EP L F F + I+GG I
Sbjct: 477 GKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEP--LPRGSGFEFVNAIVGGVI 534
Query: 525 PKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXX 584
PKE+IPA++KGI + G ++G+PV+ IKV L +GS+ VDSSE
Sbjct: 535 PKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAGSMAIKEAV 594
Query: 585 XXXXSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFG 644
ILEPIM+VEV P E++G V+GD+N +RG I + N ++I +++PL E+FG
Sbjct: 595 QKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFG 654
Query: 645 YSTDLRSNTKG 655
Y+TDLRS T+G
Sbjct: 655 YATDLRSKTQG 665
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYG-GEVR-AFDTIDNAPEEKERGITISTSHVEYESE 712
G H+D GKTT T + + I+ GEV T+D +E+ERGITI+ + +
Sbjct: 16 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK 75
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
+ +D PGH D+ + +DGAI+V + G PQ+ A + VP I
Sbjct: 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-A 134
Query: 773 FLNKAD 778
F NK D
Sbjct: 135 FANKMD 140
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 579 bits (1493), Expect = e-165, Method: Compositional matrix adjust.
Identities = 295/671 (43%), Positives = 428/671 (63%), Gaps = 22/671 (3%)
Query: 1 MKNKVLY----FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQE 56
M KV Y RNIGI AH+DAGKTTTTERIL+Y+G HKI EVH G D+M+QE+E
Sbjct: 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERE 60
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQP 116
RGITIT+A + FW+ ++ INIID PGHVDFTIEVERS+RVLDGA+++ +S G++P
Sbjct: 61 RGITITAAVTTCFWKDHR----INIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEP 116
Query: 117 QTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEG 176
Q+ETVW Q++KYKVP++ F NKMD+ GA+ I ++++ + + IG E+ + G
Sbjct: 117 QSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSG 176
Query: 177 IVDIINKKSFFWKEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNY 233
I+D++ K++ + + I I ++ L Y+E ++E ++ DE + KY+
Sbjct: 177 IIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEE 236
Query: 234 SIND-IKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDF------KN 286
+ + +IRK + KI P+ GS+LKNKG++ LL+++ +YLPSP D+ +
Sbjct: 237 PTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEG 296
Query: 287 NDYNINLNSN-KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRIL 345
I+ + N +L FKI DP++G L+FIR+YSG + G VYN+TK KE++ R+L
Sbjct: 297 EVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLL 356
Query: 346 RMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSL-SENIQLENXXXXXXXXXXXXXXX 404
RM AN ++++ + GD+ +VGLKE+ TGDTL + + LE+
Sbjct: 357 RMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPK 416
Query: 405 FKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKI 464
K DQEKL L + +EDP+ +S + TG+TI+SGMGELHLEIIVDR+ +E + +
Sbjct: 417 TKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANV 476
Query: 465 SKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSI 524
KPQV+Y+E+I K V EGK+I+Q+GG+GQYGHV I++EP L F F + I+GG I
Sbjct: 477 GKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEP--LPRGSGFEFVNAIVGGVI 534
Query: 525 PKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXX 584
PKE+IPA++KGI + G ++G+PV+ IKV L +GS+H VDSSE
Sbjct: 535 PKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAV 594
Query: 585 XXXXSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFG 644
ILEPIM+VEV P E++G V+GD+N +RG I + N ++I +++PL E+FG
Sbjct: 595 QKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFG 654
Query: 645 YSTDLRSNTKG 655
Y+TDLRS T+G
Sbjct: 655 YATDLRSKTQG 665
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYG-GEVR-AFDTIDNAPEEKERGITISTSHVEYESE 712
G H+D GKTT T + + I+ EV T+D +E+ERGITI+ + +
Sbjct: 16 GIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITITAAVTTCFWK 75
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
+ +D PGH D+ + +DGAI+V + G PQ+ A + VP I
Sbjct: 76 DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-A 134
Query: 773 FLNKAD 778
F NK D
Sbjct: 135 FANKMD 140
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 574 bits (1479), Expect = e-164, Method: Compositional matrix adjust.
Identities = 294/671 (43%), Positives = 427/671 (63%), Gaps = 22/671 (3%)
Query: 1 MKNKVLY----FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQE 56
M KV Y RNIGI AH+DAGKTTTTERIL+Y+G HKIGEVH G D+M+QE+E
Sbjct: 1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERE 60
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQP 116
RGITIT+A + FW+ ++ INIID PGHVDFTIEVERS+RVLDGA+++ +S G++P
Sbjct: 61 RGITITAAVTTCFWKDHR----INIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEP 116
Query: 117 QTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEG 176
Q+ETVW Q++KYKVP++ F NKMD+ GA+ I ++++ + + IG E+ + G
Sbjct: 117 QSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSG 176
Query: 177 IVDIINKKSFFWKEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYI-NNN 232
I+D++ K++ + + I I ++ L Y+E ++E ++ DE + KY+
Sbjct: 177 IIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEE 236
Query: 233 YSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVD------FKN 286
+ ++ +IRK + KI P+ GS+LKNKG++ LL+++ +YLPSP D+ +
Sbjct: 237 PTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEG 296
Query: 287 NDYNINLNSN-KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRIL 345
I+ + N +L FKI DP++G L+FIR+YSG + G VYN+TK KE++ R+L
Sbjct: 297 EVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLL 356
Query: 346 RMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSL-SENIQLENXXXXXXXXXXXXXXX 404
RM AN ++++ + GD+ +VGLKE+ TGDTL + + LE+
Sbjct: 357 RMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPK 416
Query: 405 FKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKI 464
K DQEKL L + +E P+ +S + TG TI+SGMGEL LEIIVDR+ +E + +
Sbjct: 417 TKADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVDRLKREFKVDANV 476
Query: 465 SKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSI 524
KPQV+Y+E+I K V EGK+I+Q+GG+GQYGHV I++EP L F F + I+GG I
Sbjct: 477 GKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEP--LPRGSGFEFVNAIVGGVI 534
Query: 525 PKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXX 584
PKE+IPA++KGI + G ++G+PV+ IKV L +GS+H VDSSE
Sbjct: 535 PKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAV 594
Query: 585 XXXXSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFG 644
ILEPIM+VEV P E++G V+GD+N +RG I + N ++I +++PL E+FG
Sbjct: 595 QKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFG 654
Query: 645 YSTDLRSNTKG 655
Y+TDLRS T+G
Sbjct: 655 YATDLRSKTQG 665
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYG-GEVR-AFDTIDNAPEEKERGITISTSHVEYESE 712
G H+D GKTT T + + I+ GEV T+D +E+ERGITI+ + +
Sbjct: 16 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK 75
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
+ +D PGH D+ + +DGAI+V + G PQ+ A + VP I
Sbjct: 76 DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-A 134
Query: 773 FLNKAD 778
F NK D
Sbjct: 135 FANKMD 140
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 568 bits (1463), Expect = e-162, Method: Compositional matrix adjust.
Identities = 278/660 (42%), Positives = 419/660 (63%), Gaps = 19/660 (2%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RNIGIIAH+DAGKTTTTERIL+Y+G HKIGE H G + DWM+QEQ+RGITITSA+ +
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 69 FWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128
WE ++ +NIIDTPGHVDFT+EVERSLRVLDGAV ++ A SG++PQTETVW Q+ Y
Sbjct: 71 AWEGHR----VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY 126
Query: 129 KVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFW 188
VP+++FVNKMD++GAN+ + + + PI IG E+ +E I+D++ K F +
Sbjct: 127 GVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKY 186
Query: 189 KEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSIRK 244
+ I I +D L + ++E ++ + +EKY+ + S++++K +IR+
Sbjct: 187 TNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIRQ 246
Query: 245 LVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVD------FKNNDYNI---NLNS 295
+ P++CG++ KNKG++ +L+++ +YLPSP DV N + + +S
Sbjct: 247 ATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDS 306
Query: 296 NKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDI 355
+F +L FK+ DP++G L+F R+YSG + G V NSTK +E++ R+L+M ANS+++I
Sbjct: 307 AEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEI 366
Query: 356 NDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKNDQEKLLNI 415
+ + GDI VGLK++ TGDTLC +I LE+ K DQ+K+
Sbjct: 367 DTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQA 426
Query: 416 LQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESI 475
L K +EDP+ + TG+ I+ GMGELHL+I+VDR+ KE N++ + P VSY+E+
Sbjct: 427 LVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYRETF 486
Query: 476 KKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKG 535
K +GK+ +QSGG+GQYG V I P E F F++ I+GG +P+E+IP++E G
Sbjct: 487 KSSAQVQGKFSRQSGGRGQYGDVHIEFTPN--ETGAGFEFENAIVGGVVPREYIPSVEAG 544
Query: 536 IMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXXXXXSYILEPI 595
+ + + GV+ GYP+I +K L +GS+H VDSSE ILEP+
Sbjct: 545 LKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPM 604
Query: 596 MKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKG 655
MKV + +P E++G ++GD+ +RG ++ + N +++N+Y+PL E+FGY+T LRSNT+G
Sbjct: 605 MKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQG 664
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIY--GGEVRAFDTIDNAPEEKERGITISTSHVEYESE 712
G I H+D GKTT T + + I+ G +D +E++RGITI+++ E
Sbjct: 14 GIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE 73
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
+D PGH D+ + +DGA+ V A G PQT A GVP I V
Sbjct: 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-V 132
Query: 773 FLNKAD 778
F+NK D
Sbjct: 133 FVNKMD 138
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 567 bits (1462), Expect = e-161, Method: Compositional matrix adjust.
Identities = 277/660 (41%), Positives = 419/660 (63%), Gaps = 19/660 (2%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RNIGI+AH+DAGKTTTTERIL+Y+G HKIGE H G + DWM+QEQ+RGITITSA+ +
Sbjct: 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 69 FWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128
WE ++ +NIIDTPGHVDFT+EVERSLRVLDGAV ++ A SG++PQTETVW Q+ Y
Sbjct: 71 AWEGHR----VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY 126
Query: 129 KVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFW 188
VP+++FVNKMD++GAN+ + + + PI IG E+ +E I+D++ K F +
Sbjct: 127 GVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKY 186
Query: 189 KEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSIRK 244
+ I I +D L + ++E ++ + +EKY+ + S++++K +IR+
Sbjct: 187 TNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIRQ 246
Query: 245 LVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVD------FKNNDYNI---NLNS 295
+ P++CG++ KNKG++ +L+++ +YLPSP DV N + + +S
Sbjct: 247 ATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDS 306
Query: 296 NKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDI 355
+F +L FK+ DP++G L+F R+YSG + G V NSTK +E++ R+L+M ANS+++I
Sbjct: 307 AEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEI 366
Query: 356 NDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKNDQEKLLNI 415
+ + GDI VGLK++ TGDTLC +I LE+ K DQ+K+
Sbjct: 367 DTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQA 426
Query: 416 LQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESI 475
L K +EDP+ + TG+ I+ GMGELHL+I+VDR+ KE N++ + P VSY+E+
Sbjct: 427 LVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYRETF 486
Query: 476 KKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKG 535
K +GK+ +QSGG+GQYG V I P E F F++ I+GG +P+E+IP++E G
Sbjct: 487 KSSAQVQGKFSRQSGGRGQYGDVHIEFTPN--ETGAGFEFENAIVGGVVPREYIPSVEAG 544
Query: 536 IMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXXXXXSYILEPI 595
+ + + GV+ GYP+I +K L +GS+H VDSSE ILEP+
Sbjct: 545 LKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPM 604
Query: 596 MKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKG 655
MKV + +P E++G ++GD+ +RG ++ + N +++N+Y+PL E+FGY+T LRSNT+G
Sbjct: 605 MKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQG 664
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIY--GGEVRAFDTIDNAPEEKERGITISTSHVEYESE 712
G + H+D GKTT T + + I+ G +D +E++RGITI+++ E
Sbjct: 14 GIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE 73
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
+D PGH D+ + +DGA+ V A G PQT A GVP I V
Sbjct: 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-V 132
Query: 773 FLNKAD 778
F+NK D
Sbjct: 133 FVNKMD 138
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 565 bits (1456), Expect = e-161, Method: Compositional matrix adjust.
Identities = 277/660 (41%), Positives = 418/660 (63%), Gaps = 19/660 (2%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RNIGIIAH+DAGKTTTTERIL+Y+G HKIGE H G + DWM+QEQ+RGITITSA+ +
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 69 FWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128
WE ++ +NIIDTPGHVD T+EVERSLRVLDGAV ++ A SG++PQTETVW Q+ Y
Sbjct: 71 AWEGHR----VNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY 126
Query: 129 KVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFW 188
VP+++FVNKMD++GAN+ + + + PI IG E+ +E I+D++ K F +
Sbjct: 127 GVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKY 186
Query: 189 KEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSIRK 244
+ I I +D L + ++E ++ + +EKY+ + S++++K +IR+
Sbjct: 187 TNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIRQ 246
Query: 245 LVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVD------FKNNDYNI---NLNS 295
+ P++CG++ KNKG++ +L+++ +YLPSP DV N + + +S
Sbjct: 247 ATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDS 306
Query: 296 NKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDI 355
+F +L FK+ DP++G L+F R+YSG + G V NSTK +E++ R+L+M ANS+++I
Sbjct: 307 AEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEI 366
Query: 356 NDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKNDQEKLLNI 415
+ + GDI VGLK++ TGDTLC +I LE+ K DQ+K+
Sbjct: 367 DTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQA 426
Query: 416 LQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESI 475
L K +EDP+ + TG+ I+ GMGELHL+I+VDR+ KE N++ + P VSY+E+
Sbjct: 427 LVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYRETF 486
Query: 476 KKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKG 535
K +GK+ +QSGG+GQYG V I P E F F++ I+GG +P+E+IP++E G
Sbjct: 487 KSSAQVQGKFSRQSGGRGQYGDVHIEFTPN--ETGAGFEFENAIVGGVVPREYIPSVEAG 544
Query: 536 IMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXXXXXSYILEPI 595
+ + + GV+ GYP+I +K L +GS+H VDSSE ILEP+
Sbjct: 545 LKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPM 604
Query: 596 MKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKG 655
MKV + +P E++G ++GD+ +RG ++ + N +++N+Y+PL E+FGY+T LRSNT+G
Sbjct: 605 MKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQG 664
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIY--GGEVRAFDTIDNAPEEKERGITISTSHVEYESE 712
G I H+D GKTT T + + I+ G +D +E++RGITI+++ E
Sbjct: 14 GIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE 73
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
+D PGH D + +DGA+ V A G PQT A GVP I V
Sbjct: 74 GHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-V 132
Query: 773 FLNKAD 778
F+NK D
Sbjct: 133 FVNKMD 138
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 565 bits (1455), Expect = e-161, Method: Compositional matrix adjust.
Identities = 276/660 (41%), Positives = 418/660 (63%), Gaps = 19/660 (2%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RNIGI+AH+DAGKTTTTERIL+Y+G HKIGE H G + DWM+QEQ+RGITITSA+ +
Sbjct: 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 69 FWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128
WE ++ +NIIDTPGHVD T+EVERSLRVLDGAV ++ A SG++PQTETVW Q+ Y
Sbjct: 71 AWEGHR----VNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY 126
Query: 129 KVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFW 188
VP+++FVNKMD++GAN+ + + + PI IG E+ +E I+D++ K F +
Sbjct: 127 GVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKY 186
Query: 189 KEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSIRK 244
+ I I +D L + ++E ++ + +EKY+ + S++++K +IR+
Sbjct: 187 TNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIRQ 246
Query: 245 LVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVD------FKNNDYNI---NLNS 295
+ P++CG++ KNKG++ +L+++ +YLPSP DV N + + +S
Sbjct: 247 ATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDS 306
Query: 296 NKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDI 355
+F +L FK+ DP++G L+F R+YSG + G V NSTK +E++ R+L+M ANS+++I
Sbjct: 307 AEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEI 366
Query: 356 NDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKNDQEKLLNI 415
+ + GDI VGLK++ TGDTLC +I LE+ K DQ+K+
Sbjct: 367 DTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQA 426
Query: 416 LQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESI 475
L K +EDP+ + TG+ I+ GMGELHL+I+VDR+ KE N++ + P VSY+E+
Sbjct: 427 LVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYRETF 486
Query: 476 KKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKG 535
K +GK+ +QSGG+GQYG V I P E F F++ I+GG +P+E+IP++E G
Sbjct: 487 KSSAQVQGKFSRQSGGRGQYGDVHIEFTPN--ETGAGFEFENAIVGGVVPREYIPSVEAG 544
Query: 536 IMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXXXXXSYILEPI 595
+ + + GV+ GYP+I +K L +GS+H VDSSE ILEP+
Sbjct: 545 LKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPM 604
Query: 596 MKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKG 655
MKV + +P E++G ++GD+ +RG ++ + N +++N+Y+PL E+FGY+T LRSNT+G
Sbjct: 605 MKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQG 664
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIY--GGEVRAFDTIDNAPEEKERGITISTSHVEYESE 712
G + H+D GKTT T + + I+ G +D +E++RGITI+++ E
Sbjct: 14 GIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE 73
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
+D PGH D + +DGA+ V A G PQT A GVP I V
Sbjct: 74 GHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-V 132
Query: 773 FLNKAD 778
F+NK D
Sbjct: 133 FVNKMD 138
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 537 bits (1384), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/367 (73%), Positives = 310/367 (84%), Gaps = 3/367 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+T V ++ YGG RAFD IDNAPEEK RGITI+TSHVEY++ +
Sbjct: 300 GTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 359
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHILL RQVGVP I+VFL
Sbjct: 360 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFL 419
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NK D V D+ELL+LVEME+RELL++YDF G++T IV GSAL ALEG + + I +L
Sbjct: 420 NKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWE---AKILEL 476
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
LDS IP P R DKPFL+PIEDVFSISGRGTVVTG++ERGI+K GEE+EIVG K+T
Sbjct: 477 AGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQ 536
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
K+T TG+EMF+K LDEG AGENVG+LLR +KREE+ERGQVLAK G+IK + FE EVYIL
Sbjct: 537 KSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYIL 596
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
SK+EGGRHTPFF GY+PQFYFRTTDVTG +LPE VEMV+PGDNIK+ VTL+ IA++ G
Sbjct: 597 SKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDG 656
Query: 1015 LRFAIRE 1021
LRFAIRE
Sbjct: 657 LRFAIRE 663
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 10 NIGIIAHVDAGKTTTTERILF-----YSGSSHKIGEVHHGTTITDWMQQEQERGITITSA 64
N+G I HVD GKTT T I Y G++ ++ D +E+ RGITI ++
Sbjct: 298 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI-------DNAPEEKARGITINTS 350
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
V + + +D PGH D+ + +DGA++++ A+ G PQT
Sbjct: 351 HVEYDTPTRHYAH----VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILL 406
Query: 125 SQKYKVPKMI-FVNKMD 140
++ VP +I F+NK D
Sbjct: 407 GRQVGVPYIIVFLNKCD 423
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 535 bits (1379), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/367 (73%), Positives = 310/367 (84%), Gaps = 3/367 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+T V ++ YGG RAFD IDNAPEEK RGITI+TSHVEY++ +
Sbjct: 300 GTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 359
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHILL RQVGVP I+VFL
Sbjct: 360 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFL 419
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NK D V D+ELL+LVEME+RELL++YDF G++T IV GSAL ALEG + + I +L
Sbjct: 420 NKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWE---AKILEL 476
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
LDS IP P R DKPFL+PIEDVFSISGRGTVVTG++ERGI+K GEE+EIVG K+T
Sbjct: 477 AGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQ 536
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
K+T TG+EMF+K LDEG AGENVG+LLR +KREE+ERGQVLAK G+IK + FE EVYIL
Sbjct: 537 KSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYIL 596
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
SK+EGGRHTPFF GY+PQFYFRTTDVTG +LPE VEMV+PGDNIK+ VTL+ IA++ G
Sbjct: 597 SKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDG 656
Query: 1015 LRFAIRE 1021
LRFAIRE
Sbjct: 657 LRFAIRE 663
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 10 NIGIIAHVDAGKTTTTERILF-----YSGSSHKIGEVHHGTTITDWMQQEQERGITITSA 64
N+G I HVD GKTT T I Y G++ ++ D +E+ RGITI ++
Sbjct: 298 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI-------DNAPEEKARGITINTS 350
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
V + + +D PGH D+ + +DGA++++ A+ G PQT
Sbjct: 351 HVEYDTPTRHYAH----VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILL 406
Query: 125 SQKYKVPKMI-FVNKMD 140
++ VP +I F+NK D
Sbjct: 407 GRQVGVPYIIVFLNKCD 423
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 533 bits (1374), Expect = e-151, Method: Compositional matrix adjust.
Identities = 268/367 (73%), Positives = 310/367 (84%), Gaps = 3/367 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+T V ++ YGG RAFD IDNAPEEK RGITI+TSHVEY++ +
Sbjct: 16 GTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 75
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHILL RQVGVP I+VFL
Sbjct: 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFL 135
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NK D V D+ELL+LVEME+RELL++YDF G++T IV GSAL ALEG + + I +L
Sbjct: 136 NKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWE---AKILEL 192
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
LDS IP P R DKPFL+PIEDVFSISGRGTVVTG++ERGI+K GEE+EIVG K+T
Sbjct: 193 AGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQ 252
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
K+T TG+EMF+K LDEG AGENVG+LLR +KREE+ERGQVLAK G+IK + FE EVYIL
Sbjct: 253 KSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYIL 312
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
SK+EGGRHTPFF GY+PQFYFRTTDVTG +LPE VEMV+PGDNIK+ VTL+ IA++ G
Sbjct: 313 SKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDG 372
Query: 1015 LRFAIRE 1021
LRFAIRE
Sbjct: 373 LRFAIRE 379
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 10 NIGIIAHVDAGKTTTTERILF-----YSGSSHKIGEVHHGTTITDWMQQEQERGITITSA 64
N+G I HVD GKTT T I Y G++ ++ D +E+ RGITI ++
Sbjct: 14 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI-------DNAPEEKARGITINTS 66
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
V + + +D PGH D+ + +DGA++++ A+ G PQT
Sbjct: 67 HVEYDTPTRHYAH----VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILL 122
Query: 125 SQKYKVPKMI-FVNKMD 140
++ VP +I F+NK D
Sbjct: 123 GRQVGVPYIIVFLNKCD 139
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em Map
Of An Ef-Tu Ternary Complex (Gdp And Kirromycin) Bound To
E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map Of
Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 533 bits (1373), Expect = e-151, Method: Compositional matrix adjust.
Identities = 268/367 (73%), Positives = 310/367 (84%), Gaps = 3/367 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+T V ++ YGG RAFD IDNAPEEK RGITI+TSHVEY++ +
Sbjct: 15 GTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 74
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHILL RQVGVP I+VFL
Sbjct: 75 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFL 134
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NK D V D+ELL+LVEME+RELL++YDF G++T IV GSAL ALEG + + I +L
Sbjct: 135 NKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWE---AKILEL 191
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
LDS IP P R DKPFL+PIEDVFSISGRGTVVTG++ERGI+K GEE+EIVG K+T
Sbjct: 192 AGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQ 251
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
K+T TG+EMF+K LDEG AGENVG+LLR +KREE+ERGQVLAK G+IK + FE EVYIL
Sbjct: 252 KSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYIL 311
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
SK+EGGRHTPFF GY+PQFYFRTTDVTG +LPE VEMV+PGDNIK+ VTL+ IA++ G
Sbjct: 312 SKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDG 371
Query: 1015 LRFAIRE 1021
LRFAIRE
Sbjct: 372 LRFAIRE 378
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 10 NIGIIAHVDAGKTTTTERILF-----YSGSSHKIGEVHHGTTITDWMQQEQERGITITSA 64
N+G I HVD GKTT T I Y G++ ++ D +E+ RGITI ++
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI-------DNAPEEKARGITINTS 65
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
V + + +D PGH D+ + +DGA++++ A+ G PQT
Sbjct: 66 HVEYDTPTRHYAH----VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILL 121
Query: 125 SQKYKVPKMI-FVNKMD 140
++ VP +I F+NK D
Sbjct: 122 GRQVGVPYIIVFLNKCD 138
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 533 bits (1373), Expect = e-151, Method: Compositional matrix adjust.
Identities = 268/367 (73%), Positives = 310/367 (84%), Gaps = 3/367 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+T V ++ YGG RAFD IDNAPEEK RGITI+TSHVEY++ +
Sbjct: 16 GTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 75
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHILL RQVGVP I+VFL
Sbjct: 76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFL 135
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NK D V D+ELL+LVEME+RELL++YDF G++T IV GSAL ALEG + + I +L
Sbjct: 136 NKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWE---AKILEL 192
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
LDS IP P R DKPFL+PIEDVFSISGRGTVVTG++ERGI+K GEE+EIVG K+T
Sbjct: 193 AGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQ 252
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
K+T TG+EMF+K LDEG AGENVG+LLR +KREE+ERGQVLAK G+IK + FE EVYIL
Sbjct: 253 KSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYIL 312
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
SK+EGGRHTPFF GY+PQFYFRTTDVTG +LPE VEMV+PGDNIK+ VTL+ IA++ G
Sbjct: 313 SKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDG 372
Query: 1015 LRFAIRE 1021
LRFAIRE
Sbjct: 373 LRFAIRE 379
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 10 NIGIIAHVDAGKTTTTERILF-----YSGSSHKIGEVHHGTTITDWMQQEQERGITITSA 64
N+G I HVD GKTT T I Y G++ ++ D +E+ RGITI ++
Sbjct: 14 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI-------DNAPEEKARGITINTS 66
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
V + + +D PGH D+ + +DGA++++ A+ G PQT
Sbjct: 67 HVEYDTPTRHYAH----VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILL 122
Query: 125 SQKYKVPKMI-FVNKMD 140
++ VP +I F+NK D
Sbjct: 123 GRQVGVPYIIVFLNKCD 139
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 533 bits (1372), Expect = e-151, Method: Compositional matrix adjust.
Identities = 268/367 (73%), Positives = 310/367 (84%), Gaps = 3/367 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+T V ++ YGG RAFD IDNAPEEK RGITI+TSHVEY++ +
Sbjct: 15 GTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 74
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHILL RQVGVP I+VFL
Sbjct: 75 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFL 134
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NK D V D+ELL+LVEME+RELL++YDF G++T IV GSAL ALEG + + I +L
Sbjct: 135 NKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWE---AKILEL 191
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
LDS IP P R DKPFL+PIEDVFSISGRGTVVTG++ERGI+K GEE+EIVG K+T
Sbjct: 192 AGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQ 251
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
K+T TG+EMF+K LDEG AGENVG+LLR +KREE+ERGQVLAK G+IK + FE EVYIL
Sbjct: 252 KSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYIL 311
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
SK+EGGRHTPFF GY+PQFYFRTTDVTG +LPE VEMV+PGDNIK+ VTL+ IA++ G
Sbjct: 312 SKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDG 371
Query: 1015 LRFAIRE 1021
LRFAIRE
Sbjct: 372 LRFAIRE 378
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 10 NIGIIAHVDAGKTTTTERILF-----YSGSSHKIGEVHHGTTITDWMQQEQERGITITSA 64
N+G I HVD GKTT T I Y G++ ++ D +E+ RGITI ++
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI-------DNAPEEKARGITINTS 65
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
V + + +D PGH D+ + +DGA++++ A+ G PQT
Sbjct: 66 HVEYDTPTRHYAH----VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILL 121
Query: 125 SQKYKVPKMI-FVNKMD 140
++ VP +I F+NK D
Sbjct: 122 GRQVGVPYIIVFLNKCD 138
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 533 bits (1372), Expect = e-151, Method: Compositional matrix adjust.
Identities = 268/367 (73%), Positives = 310/367 (84%), Gaps = 3/367 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+T V ++ YGG RAFD IDNAPEEK RGITI+TSHVEY++ +
Sbjct: 15 GTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 74
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHILL RQVGVP I+VFL
Sbjct: 75 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFL 134
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NK D V D+ELL+LVEME+RELL++YDF G++T IV GSAL ALEG + + I +L
Sbjct: 135 NKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWE---AKILEL 191
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
LDS IP P R DKPFL+PIEDVFSISGRGTVVTG++ERGI+K GEE+EIVG K+T
Sbjct: 192 AGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQ 251
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
K+T TG+EMF+K LDEG AGENVG+LLR +KREE+ERGQVLAK G+IK + FE EVYIL
Sbjct: 252 KSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYIL 311
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
SK+EGGRHTPFF GY+PQFYFRTTDVTG +LPE VEMV+PGDNIK+ VTL+ IA++ G
Sbjct: 312 SKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDG 371
Query: 1015 LRFAIRE 1021
LRFAIRE
Sbjct: 372 LRFAIRE 378
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 10 NIGIIAHVDAGKTTTTERILF-----YSGSSHKIGEVHHGTTITDWMQQEQERGITITSA 64
N+G I HVD GKTT T I Y G++ ++ D +E+ RGITI ++
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI-------DNAPEEKARGITINTS 65
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
V + + +D PGH D+ + +DGA++++ A+ G PQT
Sbjct: 66 HVEYDTPTRHYAH----VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILL 121
Query: 125 SQKYKVPKMI-FVNKMD 140
++ VP +I F+NK D
Sbjct: 122 GRQVGVPYIIVFLNKCD 138
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 533 bits (1372), Expect = e-151, Method: Compositional matrix adjust.
Identities = 268/367 (73%), Positives = 310/367 (84%), Gaps = 3/367 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+T V ++ YGG RAFD IDNAPEEK RGITI+TSHVEY++ +
Sbjct: 7 GTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 66
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHILL RQVGVP I+VFL
Sbjct: 67 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFL 126
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NK D V D+ELL+LVEME+RELL++YDF G++T IV GSAL ALEG + + I +L
Sbjct: 127 NKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWE---AKILEL 183
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
LDS IP P R DKPFL+PIEDVFSISGRGTVVTG++ERGI+K GEE+EIVG K+T
Sbjct: 184 AGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQ 243
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
K+T TG+EMF+K LDEG AGENVG+LLR +KREE+ERGQVLAK G+IK + FE EVYIL
Sbjct: 244 KSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYIL 303
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
SK+EGGRHTPFF GY+PQFYFRTTDVTG +LPE VEMV+PGDNIK+ VTL+ IA++ G
Sbjct: 304 SKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDG 363
Query: 1015 LRFAIRE 1021
LRFAIRE
Sbjct: 364 LRFAIRE 370
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 10 NIGIIAHVDAGKTTTTERILF-----YSGSSHKIGEVHHGTTITDWMQQEQERGITITSA 64
N+G I HVD GKTT T I Y G++ ++ D +E+ RGITI ++
Sbjct: 5 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQI-------DNAPEEKARGITINTS 57
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
V + + +D PGH D+ + +DGA++++ A+ G PQT
Sbjct: 58 HVEYDTPTRHYAH----VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILL 113
Query: 125 SQKYKVPKMI-FVNKMD 140
++ VP +I F+NK D
Sbjct: 114 GRQVGVPYIIVFLNKCD 130
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 522 bits (1344), Expect = e-148, Method: Compositional matrix adjust.
Identities = 274/660 (41%), Positives = 405/660 (61%), Gaps = 46/660 (6%)
Query: 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVS 67
RNIGI AH+DAGKTTTTERIL+Y+G I +T+
Sbjct: 7 LRNIGIAAHIDAGKTTTTERILYYTGR------------------------IAVTTC--- 39
Query: 68 IFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK 127
FW+ ++ INIIDTPGHVDFTIEVERS+RVLDGA+++ +S G++PQ+ETVW Q++K
Sbjct: 40 -FWKDHR----INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK 94
Query: 128 YKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFF 187
YKVP++ F NKMD+ GA+ I ++++ + + IG E+ + GI+D++ K++
Sbjct: 95 YKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYT 154
Query: 188 WKEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYI-NNNYSINDIKNSIR 243
+ + I I ++ L Y+E ++E ++ DE + KY+ + ++ +IR
Sbjct: 155 YGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIR 214
Query: 244 KLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVD------FKNNDYNINLNSN- 296
K + KI P+ GS+LKNKG++ LL+++ +YLPSP D+ + I+ + N
Sbjct: 215 KGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNG 274
Query: 297 KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDIN 356
+L FKI DP++G L+FIR+YSG + G VYN+TK KE++ R+LRM AN ++++
Sbjct: 275 PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVE 334
Query: 357 DAHFGDIVVIVGLKESSTGDTLCSL-SENIQLENXXXXXXXXXXXXXXXFKNDQEKLLNI 415
+ GD+ +VGLKE+ TGDTL + + LE+ K DQEKL
Sbjct: 335 ELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQA 394
Query: 416 LQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESI 475
L + +EDP+ +S + TG+TI+SGMGELHLEIIVDR+ +E + + KPQV+Y+E+I
Sbjct: 395 LARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRETI 454
Query: 476 KKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKG 535
K V EGK+I+Q+GG+GQYGHV I++EP L F F + I+GG IPKE+IPA++KG
Sbjct: 455 TKPVDVEGKFIRQTGGRGQYGHVKIKVEP--LPRGSGFEFVNAIVGGVIPKEYIPAVQKG 512
Query: 536 IMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXXXXXSYILEPI 595
I + G ++G+PV+ IKV L +GS+ VDSSE ILEPI
Sbjct: 513 IEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPI 572
Query: 596 MKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKG 655
M+VEV P E++G V+GD+N +RG I + N ++I +++PL E+FGY+TDLRS T+G
Sbjct: 573 MRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQG 632
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 719 VDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKAD 778
+D PGH D+ + +DGAI+V + G PQ+ A + VP I F NK D
Sbjct: 49 IDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMD 107
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into Cryo-
Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 511 bits (1315), Expect = e-144, Method: Compositional matrix adjust.
Identities = 252/377 (66%), Positives = 298/377 (79%), Gaps = 11/377 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSS-EIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN 713
GTIGHVDHGKTTLTAALT V++ E EV+ + ID APEE+ RGITI+T+HVEYE+
Sbjct: 15 GTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVF 773
+HY+HVDCPGHADYIKNMITGAAQMDGAILV SA DGPMPQTREHILLARQVGVP IVVF
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 774 LNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALE--------GKDDNQ 825
+NK D V D ELLDLVEME+R+LL +Y+F G+ ++ GSALLALE + +N+
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENE 194
Query: 826 LGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885
I +LLD +D IPTP R DKPFLMP+EDVF+I+GRGTV TG+IERG VK G+E+
Sbjct: 195 W-VDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEV 253
Query: 886 EIVGYK-QTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSY 944
EIVG +T KT +TG+EM +KTL EG+AG+NVG+LLR V REEVERGQVLAK GSI +
Sbjct: 254 EIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPH 313
Query: 945 NIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVT 1004
FE VYIL KEEGGRHT FF GY+PQFYFRTTDVTG+ +LP+ VEMV+PGDN+ V
Sbjct: 314 TKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPGDNVTFTVE 373
Query: 1005 LLSSIAIEIGLRFAIRE 1021
L+ +A+E GLRFAIRE
Sbjct: 374 LIKPVALEEGLRFAIRE 390
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T + + + + + EV I D +E+ RGITI +A V
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI-DKAPEERARGITINTAHVE-- 69
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
+E K Y + +D PGH D+ + +DGA++++ A+ G PQT +++
Sbjct: 70 YETAKRHY--SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 130 VPKM-IFVNKMDRI 142
VP + +F+NK+D +
Sbjct: 128 VPYIVVFMNKVDMV 141
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 511 bits (1315), Expect = e-144, Method: Compositional matrix adjust.
Identities = 252/377 (66%), Positives = 298/377 (79%), Gaps = 11/377 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSS-EIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN 713
GTIGHVDHGKTTLTAALT V++ E EV+ + ID APEE+ RGITI+T+HVEYE+
Sbjct: 15 GTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVF 773
+HY+HVDCPGHADYIKNMITGAAQMDGAILV SA DGPMPQTREHILLARQVGVP IVVF
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 774 LNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALE--------GKDDNQ 825
+NK D V D ELLDLVEME+R+LL +Y+F G+ ++ GSALLALE + +N+
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENE 194
Query: 826 LGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885
I +LLD +D IPTP R DKPFLMP+EDVF+I+GRGTV TG+IERG VK G+E+
Sbjct: 195 W-VDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEV 253
Query: 886 EIVGYK-QTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSY 944
EIVG +T KT +TG+EM +KTL EG+AG+NVG+LLR V REEVERGQVLAK GSI +
Sbjct: 254 EIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPH 313
Query: 945 NIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVT 1004
FE VYIL KEEGGRHT FF GY+PQFYFRTTDVTG+ +LP+ VEMV+PGDN+ V
Sbjct: 314 TKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEMVMPGDNVTFTVE 373
Query: 1005 LLSSIAIEIGLRFAIRE 1021
L+ +A+E GLRFAIRE
Sbjct: 374 LIKPVALEEGLRFAIRE 390
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T + + + + + EV I D +E+ RGITI +A V
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI-DKAPEERARGITINTAHVE-- 69
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
+E K Y + +D PGH D+ + +DGA++++ A+ G PQT +++
Sbjct: 70 YETAKRHY--SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 130 VPKM-IFVNKMDRI 142
VP + +F+NK+D +
Sbjct: 128 VPYIVVFMNKVDMV 141
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 510 bits (1313), Expect = e-144, Method: Compositional matrix adjust.
Identities = 251/377 (66%), Positives = 299/377 (79%), Gaps = 11/377 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKV-SSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN 713
GTIGHVDHGKTTLTAALT V ++E EV+ + ID APEE+ RGITI+T+HVEYE+
Sbjct: 15 GTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVF 773
+HY+HVDCPGHADYIKNMITGAAQMDGAILV SA DGPMPQTREHILLARQVGVP IVVF
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 774 LNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALE--------GKDDNQ 825
+NK D V D ELLDLVEME+R+LL +Y+F G+ ++ GSALLALE + +N+
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENE 194
Query: 826 LGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885
I +LLD +D IPTP R DKPFLMP+EDVF+I+GRGTV TG+IERG VK G+E+
Sbjct: 195 W-VDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEV 253
Query: 886 EIVGYK-QTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSY 944
EIVG +T KT +TG+EM +KTL EG+AG+NVG+LLR V REEVERGQVLAK GSI +
Sbjct: 254 EIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPH 313
Query: 945 NIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVT 1004
FE VY+L KEEGGRHT FF+GY+PQFYFRTTDVTG+ +LP+ VEMV+PGDN+ V
Sbjct: 314 TKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVRLPQGVEMVMPGDNVTFTVE 373
Query: 1005 LLSSIAIEIGLRFAIRE 1021
L+ +A+E GLRFAIRE
Sbjct: 374 LIKPVALEEGLRFAIRE 390
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T + F + + + EV I D +E+ RGITI +A V
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDI-DKAPEERARGITINTAHVE-- 69
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
+E K Y + +D PGH D+ + +DGA++++ A+ G PQT +++
Sbjct: 70 YETAKRHY--SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 130 VPKM-IFVNKMDRI 142
VP + +F+NK+D +
Sbjct: 128 VPYIVVFMNKVDMV 141
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 509 bits (1312), Expect = e-144, Method: Compositional matrix adjust.
Identities = 251/377 (66%), Positives = 298/377 (79%), Gaps = 11/377 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSS-EIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN 713
GTIGHVDHGKTTLTAALT V++ E EV+ + ID APEE+ RGITI+T+HVEYE+
Sbjct: 15 GTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVF 773
+HY+HVDCPGHADYIKNMITGAAQMDGAILV SA DGPMPQTREHILLARQVGVP IVVF
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 774 LNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEG--------KDDNQ 825
+NK D V D ELLDLVEME+R+LL +Y+F G+ ++ GSALLALE + +N+
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 194
Query: 826 LGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885
I +LLD +D IPTP R DKPFLMP+EDVF+I+GRGTV TG+IERG VK G+E+
Sbjct: 195 W-VDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEV 253
Query: 886 EIVGYK-QTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSY 944
EIVG +T KT +TG+EM +KTL EG+AG+NVG+LLR V REEVERGQVLAK GSI +
Sbjct: 254 EIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPH 313
Query: 945 NIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVT 1004
FE VY+L KEEGGRHT FF+GY+PQFYFRTTDVTG+ +LP VEMV+PGDN+ V
Sbjct: 314 TKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVE 373
Query: 1005 LLSSIAIEIGLRFAIRE 1021
L+ +A+E GLRFAIRE
Sbjct: 374 LIKPVALEEGLRFAIRE 390
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T + + + + + EV I D +E+ RGITI +A V
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI-DKAPEERARGITINTAHVE-- 69
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
+E K Y + +D PGH D+ + +DGA++++ A+ G PQT +++
Sbjct: 70 YETAKRHY--SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 130 VPKM-IFVNKMDRI 142
VP + +F+NK+D +
Sbjct: 128 VPYIVVFMNKVDMV 141
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic Ge2270
A
Length = 405
Score = 509 bits (1312), Expect = e-144, Method: Compositional matrix adjust.
Identities = 251/377 (66%), Positives = 298/377 (79%), Gaps = 11/377 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKV-SSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN 713
GTIGHVDHGKTTLTAALT V ++E EV+ + ID APEE+ RGITI+T+HVEYE+
Sbjct: 15 GTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVF 773
+HY+HVDCPGHADYIKNMITGAAQMDGAILV SA DGPMPQTREHILLARQVGVP IVVF
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 774 LNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEG--------KDDNQ 825
+NK D V D ELLDLVEME+R+LL +Y+F G+ ++ GSALLALE + +N+
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 194
Query: 826 LGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885
I +LLD +D IPTP R DKPFLMP+EDVF+I+GRGTV TG+IERG VK G+E+
Sbjct: 195 W-VDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEV 253
Query: 886 EIVGYK-QTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSY 944
EIVG +T KT +TG+EM +KTL EG+AG+NVG+LLR V REEVERGQVLAK GSI +
Sbjct: 254 EIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPH 313
Query: 945 NIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVT 1004
FE VY+L KEEGGRHT FF+GY+PQFYFRTTDVTG+ +LP VEMV+PGDN+ V
Sbjct: 314 TKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVE 373
Query: 1005 LLSSIAIEIGLRFAIRE 1021
L+ +A+E GLRFAIRE
Sbjct: 374 LIKPVALEEGLRFAIRE 390
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T + + + + + EV I D +E+ RGITI +A V
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDI-DKAPEERARGITINTAHVE-- 69
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
+E K Y + +D PGH D+ + +DGA++++ A+ G PQT +++
Sbjct: 70 YETAKRHY--SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 130 VPKM-IFVNKMDRI 142
VP + +F+NK+D +
Sbjct: 128 VPYIVVFMNKVDMV 141
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 509 bits (1311), Expect = e-144, Method: Compositional matrix adjust.
Identities = 251/377 (66%), Positives = 298/377 (79%), Gaps = 11/377 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSS-EIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN 713
GTIGHVDHGKTTLTAALT V++ E EV+ + ID APEE+ RGITI+T+HVEYE+
Sbjct: 15 GTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVF 773
+HY+HVDCPGHADYIKNMITGAAQMDGAILV SA DGPMPQTREHILLARQVGVP IVVF
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 774 LNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEG--------KDDNQ 825
+NK D V D ELLDLVEME+R+LL +Y+F G+ ++ GSALLALE + +N+
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 194
Query: 826 LGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885
I +LLD +D IPTP R DKPFLMP+EDVF+I+GRGTV TG+IERG VK G+E+
Sbjct: 195 W-VDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEV 253
Query: 886 EIVGYK-QTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSY 944
EIVG +T KT +TG+EM +KTL EG+AG+NVG+LLR V REEVERGQVLAK GSI +
Sbjct: 254 EIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPH 313
Query: 945 NIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVT 1004
FE VY+L KEEGGRHT FF+GY+PQFYFRTTDVTG+ +LP VEMV+PGDN+ V
Sbjct: 314 TKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVE 373
Query: 1005 LLSSIAIEIGLRFAIRE 1021
L+ +A+E GLRFAIRE
Sbjct: 374 LIKPVALEEGLRFAIRE 390
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T + + + + + EV I D +E+ RGITI +A V
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI-DKAPEERARGITINTAHVE-- 69
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
+E K Y + +D PGH D+ + +DGA++++ A+ G PQT +++
Sbjct: 70 YETAKRHY--SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 130 VPKM-IFVNKMDRI 142
VP + +F+NK+D +
Sbjct: 128 VPYIVVFMNKVDMV 141
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation Factor
Tu (Ef-Tu) In Complex With The Gtp Analogue Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And
Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A
Cryo-Em Map. This File Contains The 30s Subunit And The
Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 509 bits (1310), Expect = e-144, Method: Compositional matrix adjust.
Identities = 251/377 (66%), Positives = 298/377 (79%), Gaps = 11/377 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKV-SSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN 713
GTIGHVDHGKTTLTAALT V ++E EV+ + ID APEE+ RGITI+T+HVEYE+
Sbjct: 15 GTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVF 773
+HY+HVDCPGHADYIKNMITGAAQMDGAILV SA DGPMPQTREHILLARQVGVP IVVF
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 774 LNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEG--------KDDNQ 825
+NK D V D ELLDLVEME+R+LL +Y+F G+ ++ GSALLALE + +N+
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 194
Query: 826 LGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885
I +LLD +D IPTP R DKPFLMP+EDVF+I+GRGTV TG+IERG VK G+E+
Sbjct: 195 W-VDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEV 253
Query: 886 EIVGYK-QTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSY 944
EIVG +T KT +TG+EM +KTL EG+AG+NVG+LLR V REEVERGQVLAK GSI +
Sbjct: 254 EIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPH 313
Query: 945 NIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVT 1004
FE VY+L KEEGGRHT FF+GY+PQFYFRTTDVTG+ +LP VEMV+PGDN+ V
Sbjct: 314 TKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVE 373
Query: 1005 LLSSIAIEIGLRFAIRE 1021
L+ +A+E GLRFAIRE
Sbjct: 374 LIKPVALEEGLRFAIRE 390
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T + F + + + EV I D +E+ RGITI +A V
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDI-DKAPEERARGITINTAHVE-- 69
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
+E K Y + +D PGH D+ + +DGA++++ A+ G PQT +++
Sbjct: 70 YETAKRHY--SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 130 VPKM-IFVNKMDRI 142
VP + +F+NK+D +
Sbjct: 128 VPYIVVFMNKVDMV 141
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 509 bits (1310), Expect = e-144, Method: Compositional matrix adjust.
Identities = 250/377 (66%), Positives = 298/377 (79%), Gaps = 11/377 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSS-EIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN 713
GTIGHVDHGKTTLTAALT V++ E EV+ + ID APEE+ RGITI+T+HVEYE+
Sbjct: 15 GTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVF 773
+HY+HVDCPGHADYIKNMITGAAQMDGAILV SA DGPMPQTREHILLARQVGVP IVVF
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 774 LNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEG--------KDDNQ 825
+NK D V D ELLDLVEME+R+LL +Y+F G+ ++ GSALLALE + +N+
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 194
Query: 826 LGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885
I +LLD +D IPTP R DKPFLMP+EDVF+I+GRGTV TG+IERG VK G+E+
Sbjct: 195 W-VDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEV 253
Query: 886 EIVGYK-QTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSY 944
EIVG +T +T +TG+EM +KTL EG+AG+NVG+LLR V REEVERGQVLAK GSI +
Sbjct: 254 EIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPH 313
Query: 945 NIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVT 1004
FE VY+L KEEGGRHT FF+GY+PQFYFRTTDVTG+ +LP VEMV+PGDN+ V
Sbjct: 314 TKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVE 373
Query: 1005 LLSSIAIEIGLRFAIRE 1021
L+ +A+E GLRFAIRE
Sbjct: 374 LIKPVALEEGLRFAIRE 390
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T + + + + + EV I D +E+ RGITI +A V
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI-DKAPEERARGITINTAHVE-- 69
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
+E K Y + +D PGH D+ + +DGA++++ A+ G PQT +++
Sbjct: 70 YETAKRHY--SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 130 VPKM-IFVNKMDRI 142
VP + +F+NK+D +
Sbjct: 128 VPYIVVFMNKVDMV 141
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 508 bits (1309), Expect = e-144, Method: Compositional matrix adjust.
Identities = 250/377 (66%), Positives = 298/377 (79%), Gaps = 11/377 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKV-SSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN 713
GTIGHVDHGKTTLTAALT V ++E EV+ + ID APEE+ RGITI+T+HVEYE+
Sbjct: 15 GTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVF 773
+HY+HVDCPGHADYIKNMITGAAQMDGAILV SA DGPMPQTREHILLARQVGVP IVVF
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 774 LNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEG--------KDDNQ 825
+NK D V D ELLDLVEME+R+LL +Y+F G+ ++ GSALLALE + +N+
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 194
Query: 826 LGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885
I +LLD +D IPTP R DKPFLMP+EDVF+I+GRGTV TG+IERG VK G+E+
Sbjct: 195 W-VDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEV 253
Query: 886 EIVGYK-QTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSY 944
EIVG +T +T +TG+EM +KTL EG+AG+NVG+LLR V REEVERGQVLAK GSI +
Sbjct: 254 EIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPH 313
Query: 945 NIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVT 1004
FE VY+L KEEGGRHT FF+GY+PQFYFRTTDVTG+ +LP VEMV+PGDN+ V
Sbjct: 314 TKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVE 373
Query: 1005 LLSSIAIEIGLRFAIRE 1021
L+ +A+E GLRFAIRE
Sbjct: 374 LIKPVALEEGLRFAIRE 390
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T + + + + + EV I D +E+ RGITI +A V
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDI-DKAPEERARGITINTAHVE-- 69
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
+E K Y + +D PGH D+ + +DGA++++ A+ G PQT +++
Sbjct: 70 YETAKRHY--SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 130 VPKM-IFVNKMDRI 142
VP + +F+NK+D +
Sbjct: 128 VPYIVVFMNKVDMV 141
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And
Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And
Trna (Part 3 Of 4)
Length = 406
Score = 508 bits (1309), Expect = e-144, Method: Compositional matrix adjust.
Identities = 250/377 (66%), Positives = 298/377 (79%), Gaps = 11/377 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSS-EIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN 713
GTIGHVDHGKTTLTAALT V++ E EV+ + ID APEE+ RGITI+T+HVEYE+
Sbjct: 16 GTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 75
Query: 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVF 773
+HY+HVDCPGHADYIKNMITGAAQMDGAILV SA DGPMPQTREHILLARQVGVP IVVF
Sbjct: 76 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 135
Query: 774 LNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEG--------KDDNQ 825
+NK D V D ELLDLVEME+R+LL +Y+F G+ ++ GSALLALE + +N+
Sbjct: 136 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 195
Query: 826 LGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885
I +LLD +D IPTP R DKPFLMP+EDVF+I+GRGTV TG+IERG VK G+E+
Sbjct: 196 W-VDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEV 254
Query: 886 EIVGYK-QTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSY 944
EIVG +T +T +TG+EM +KTL EG+AG+NVG+LLR V REEVERGQVLAK GSI +
Sbjct: 255 EIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPH 314
Query: 945 NIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVT 1004
FE VY+L KEEGGRHT FF+GY+PQFYFRTTDVTG+ +LP VEMV+PGDN+ V
Sbjct: 315 TKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVE 374
Query: 1005 LLSSIAIEIGLRFAIRE 1021
L+ +A+E GLRFAIRE
Sbjct: 375 LIKPVALEEGLRFAIRE 391
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T + + + + + EV I D +E+ RGITI +A V
Sbjct: 14 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI-DKAPEERARGITINTAHVE-- 70
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
+E K Y + +D PGH D+ + +DGA++++ A+ G PQT +++
Sbjct: 71 YETAKRHY--SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 128
Query: 130 VPKM-IFVNKMDRI 142
VP + +F+NK+D +
Sbjct: 129 VPYIVVFMNKVDMV 142
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 498 bits (1283), Expect = e-141, Method: Compositional matrix adjust.
Identities = 256/367 (69%), Positives = 298/367 (81%), Gaps = 17/367 (4%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+T V ++ YGG R GITI+TSHVEY++ +
Sbjct: 15 GTIGHVDHGKTTLTAAITTVLAKTYGGAAR--------------GITINTSHVEYDTPTR 60
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHILL RQVGVP I+VFL
Sbjct: 61 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFL 120
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NK D V D+ELL+LVEME+RELL++YDF G++T IV GSAL ALEG + + I +L
Sbjct: 121 NKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWE---AKILEL 177
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
LDS IP P R DKPFL+PIEDVFSISGRGTVVTG++ERGI+K GEE+EIVG K+T
Sbjct: 178 AGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQ 237
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
K+T TG+EMF+K LDEG AGENVG+LLR +KREE+ERGQVLAK G+IK + FE EVYIL
Sbjct: 238 KSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYIL 297
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
SK+EGGRHTPFF GY+PQFYFRTTDVTG +LPE VEMV+PGDNIK+ VTL+ IA++ G
Sbjct: 298 SKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDG 357
Query: 1015 LRFAIRE 1021
LRFAIRE
Sbjct: 358 LRFAIRE 364
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 21/132 (15%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T I TT+ RGITI ++ V
Sbjct: 13 NVGTIGHVDHGKTTLTAAI----------------TTVLAKTYGGAARGITINTSHVEYD 56
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
+ + +D PGH D+ + +DGA++++ A+ G PQT ++
Sbjct: 57 TPTRHYAH----VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 112
Query: 130 VPKMI-FVNKMD 140
VP +I F+NK D
Sbjct: 113 VPYIIVFLNKCD 124
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s Ribosome
Length = 405
Score = 482 bits (1241), Expect = e-136, Method: Compositional matrix adjust.
Identities = 240/376 (63%), Positives = 287/376 (76%), Gaps = 9/376 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSS-EIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN 713
GTIGHVDHGKTTLTAALT V++ E EV+ + ID A EE+ RGITI+T+HVEYE+
Sbjct: 15 GTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDIDKAREERARGITINTAHVEYETAK 74
Query: 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVF 773
+HY+HVDC GHADYIKNMITGAAQMDGAILV SA DG M QTREHILLARQVGV IVVF
Sbjct: 75 RHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQVGVRYIVVF 134
Query: 774 LNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTS--- 830
+NK D V D+ELLDLVEME+R+LL +Y+F G+ +++ GSALLALE N+
Sbjct: 135 MNKVDMVDDRELLDLVEMEVRDLLNQYEFRGDEVRVIRGSALLALEEMHKNRKTKRGENE 194
Query: 831 ----IKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIE 886
I +LLD +D I T R DK FLM +EDVF+I+GRGTV TG+IERG VK G+E+E
Sbjct: 195 WVDKIWELLDAIDEYIRTRVRDVDKRFLMRVEDVFTITGRGTVATGRIERGKVKVGDEVE 254
Query: 887 IVGY-KQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYN 945
IVG ++T KT +TG+EM +KTL EG+AG+NVG+LLR V REEVERGQVLAK GSI +
Sbjct: 255 IVGLARETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKRGSITRHT 314
Query: 946 IFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTL 1005
FE VYIL KEEGGRHT FF GY+ QFYFRTTDVTG+ +L + VEMV+ GDN+ V L
Sbjct: 315 KFEASVYILKKEEGGRHTGFFTGYRRQFYFRTTDVTGVVRLRQGVEMVMRGDNVTFTVEL 374
Query: 1006 LSSIAIEIGLRFAIRE 1021
+ +A+E GLRFAIRE
Sbjct: 375 IKRVALEEGLRFAIRE 390
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T + + + + ++ EV I D ++E+ RGITI +A V
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDI-DKAREERARGITINTAHVE-- 69
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
+E K Y + +D GH D+ + +DGA++++ A+ G QT +++
Sbjct: 70 YETAKRHY--SHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQVG 127
Query: 130 VPKM-IFVNKMD 140
V + +F+NK+D
Sbjct: 128 VRYIVVFMNKVD 139
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 462 bits (1188), Expect = e-130, Method: Composition-based stats.
Identities = 234/323 (72%), Positives = 273/323 (84%), Gaps = 3/323 (0%)
Query: 699 GITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREH 758
GITI+TSHVEY++ +HYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREH
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 759 ILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLAL 818
ILL RQVGVP I+VFLNK D V D+ELL+LVEME+RELL++YDF G++T IV GSAL AL
Sbjct: 61 ILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKAL 120
Query: 819 EGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGI 878
EG + + I +L LDS IP P R DKPFL+PIEDVFSISGRGTVVTG++ERGI
Sbjct: 121 EGDAEWE---AKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGI 177
Query: 879 VKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKI 938
+K GEE+EIVG K+T K+T TG+EMF+K LDEG AGENVG+LLR +KREE+ERGQVLAK
Sbjct: 178 IKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 237
Query: 939 GSIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDN 998
G+IK + FE EVYILSK+EGGRHTPFF GY+PQFYFRTTDVTG +LPE VEMV+PGDN
Sbjct: 238 GTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDN 297
Query: 999 IKLNVTLLSSIAIEIGLRFAIRE 1021
IK+ VTL+ IA++ GLRFAIRE
Sbjct: 298 IKMVVTLIHPIAMDDGLRFAIRE 320
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 58 GITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQ 117
GITI ++ V + + +D PGH D+ + +DGA++++ A+ G PQ
Sbjct: 1 GITINTSHVEYDTPTRHYAH----VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ 56
Query: 118 TETVWFQSQKYKVPKMI-FVNKMD 140
T ++ VP +I F+NK D
Sbjct: 57 TREHILLGRQVGVPYIIVFLNKCD 80
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 457 bits (1175), Expect = e-128, Method: Composition-based stats.
Identities = 233/323 (72%), Positives = 272/323 (84%), Gaps = 3/323 (0%)
Query: 699 GITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREH 758
GITI+TSHVEY++ +HYAHVD PGHADY+KNMITGAAQMDGAILV +A DGPMPQTREH
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 759 ILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLAL 818
ILL RQVGVP I+VFLNK D V D+ELL+LVEME+RELL++YDF G++T IV GSAL AL
Sbjct: 61 ILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKAL 120
Query: 819 EGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGI 878
EG + + I +L LDS IP P R DKPFL+PIEDVFSISGRGTVVTG++ERGI
Sbjct: 121 EGDAEWE---AKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGI 177
Query: 879 VKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKI 938
+K GEE+EIVG K+T K+T TG+EMF+K LDEG AGENVG+LLR +KREE+ERGQVLAK
Sbjct: 178 IKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 237
Query: 939 GSIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDN 998
G+IK + FE EVYILSK+EGGRHTPFF GY+PQFYFRTTDVTG +LPE VEMV+PGDN
Sbjct: 238 GTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDN 297
Query: 999 IKLNVTLLSSIAIEIGLRFAIRE 1021
IK+ VTL+ IA++ GLRFAIRE
Sbjct: 298 IKMVVTLIHPIAMDDGLRFAIRE 320
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 58 GITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQ 117
GITI ++ V + + +D PGH D+ + +DGA++++ A+ G PQ
Sbjct: 1 GITINTSHVEYDTPTRHYAH----VDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ 56
Query: 118 TETVWFQSQKYKVPKMI-FVNKMD 140
T ++ VP +I F+NK D
Sbjct: 57 TREHILLGRQVGVPYIIVFLNKCD 80
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp
Length = 397
Score = 447 bits (1149), Expect = e-125, Method: Compositional matrix adjust.
Identities = 207/367 (56%), Positives = 280/367 (76%), Gaps = 1/367 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+TK+ +E G + + ++ IDNAPEE+ RGITI+ +HVEY + +
Sbjct: 7 GTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAAR 66
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAH DCPGHADY+KNMITG A +DG ILV +A DGPMPQTREH+LLARQ+GV ++VV++
Sbjct: 67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYV 126
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NKAD VQD E+++LVE+EIRELLTE+ + GE T I++GSAL ALE +D +LG S++KL
Sbjct: 127 NKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDP-ELGLKSVQKL 185
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
LD +D+ IP P R +KPFL+P+E V+SI GRGTVVTG +ERGI+K G+E E +G+ + I
Sbjct: 186 LDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNI 245
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
+T +TGIEMF K+LD AG+N+G L+R +KRE++ RG V+AK GSI+ + E +VYIL
Sbjct: 246 RTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYIL 305
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
+KEEGGRH PF + + P + T D+ LP E+ +PG+++KL + L + +E G
Sbjct: 306 TKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKG 365
Query: 1015 LRFAIRE 1021
RF +R+
Sbjct: 366 QRFTLRD 372
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 11/136 (8%)
Query: 10 NIGIIAHVDAGKTTTTERI--LFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVS 67
N+G I HVD GKTT T I + G K + D +E+ RGITI +A V
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEE----IDNAPEERARGITINAAHVE 60
Query: 68 IFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK 127
+ + D PGH D+ + LDG ++++ A+ G PQT +++
Sbjct: 61 YSTAARHYAH----TDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ 116
Query: 128 YKVPK-MIFVNKMDRI 142
V +++VNK D +
Sbjct: 117 IGVEHVVVYVNKADAV 132
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/367 (55%), Positives = 272/367 (74%), Gaps = 1/367 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+TK+ +E G + + ++ IDNAPEE+ RGITI+ +HVEY + +
Sbjct: 18 GTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAAR 77
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAH DCPGHADY+KN ITG A +DG ILV +A DGP PQTREH+LLARQ+GV ++VV++
Sbjct: 78 HYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLARQIGVEHVVVYV 137
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NKAD VQD E ++LVE+EIRELLTE+ + GE T I++GSAL ALE +D +LG S++KL
Sbjct: 138 NKADAVQDSEXVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDP-ELGLKSVQKL 196
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
LD +D+ IP P R +KPFL+P+E V+SI GRGTVVTG +ERGI+K G+E E +G+ + I
Sbjct: 197 LDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNI 256
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
+T +TGIE F K+LD AG+N+G L+R +KRE++ RG V AK GSI+ + E +VYIL
Sbjct: 257 RTVVTGIEXFHKSLDRAEAGDNLGALVRGLKREDLRRGLVXAKPGSIQPHQKVEAQVYIL 316
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
+KEEGGRH PF + + P + T D LP E+ PG+++KL + L +E G
Sbjct: 317 TKEEGGRHKPFVSHFXPVXFSLTWDXACRIILPPGKELAXPGEDLKLTLILRQPXILEKG 376
Query: 1015 LRFAIRE 1021
RF +R+
Sbjct: 377 QRFTLRD 383
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Query: 10 NIGIIAHVDAGKTTTTERI--LFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVS 67
N+G I HVD GKTT T I + G K + D +E+ RGITI +A V
Sbjct: 16 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEE----IDNAPEERARGITINAAHVE 71
Query: 68 IFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK 127
+ + D PGH D+ LDG ++++ A+ G PQT +++
Sbjct: 72 YSTAARHYAHT----DCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLARQ 127
Query: 128 YKVPK-MIFVNKMDRI 142
V +++VNK D +
Sbjct: 128 IGVEHVVVYVNKADAV 143
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 313 bits (803), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 179/654 (27%), Positives = 323/654 (49%), Gaps = 33/654 (5%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
R + ++ H +GKTT TE +L+ +G+ + G V GTT TD+ + + T+ + +
Sbjct: 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL 69
Query: 69 FWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128
+ ++ + ++D PG+ DF E+ +L D A++ + A +G+Q TE W +++
Sbjct: 70 LFRGHR----VFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL 125
Query: 129 KVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFW 188
+P+M+ V K+D+ G +Y + D++ I LPI+ + + G++D+ + K++ +
Sbjct: 126 GLPRMVVVTKLDK-GGDYYALLEDLRSTLGPI-LPIDLPLYEGGKWVGLIDVFHGKAYRY 183
Query: 189 KENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSIND-IKNSIRKLVL 247
+ + ++ + + +LE + DE LEKY+ + ++ + + V
Sbjct: 184 ENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVR 243
Query: 248 KNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFH 307
+ + P+ S + G+ LL I E LPSP + ++ VFK+
Sbjct: 244 RGLLYPVALASGEREIGVLPLLELILEALPSPTE----------RFGDGPPLAKVFKVQV 293
Query: 308 DPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV 367
DPF+G ++++R+Y G +K GD + + +V R+ ++ KD+ + + ++
Sbjct: 294 DPFMGQVAYLRLYRGRLKPGDSLQSEAGQV-----RLPHLYVPMGKDLLEVEEAEAGFVL 348
Query: 368 GLKESSTGDTLCSLSENIQLENXXXXXXX-----XXXXXXXXFKNDQEKLLNILQKFCKE 422
G+ ++ L + + E+ + D+ +L L+K +E
Sbjct: 349 GVPKAEGLHRGMVLWQGEKPESEEVPFARLPDPNVPVALHPKGRTDEARLGEALRKLLEE 408
Query: 423 DPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIVTQE 482
DPSL L TGE +L G GELHL +R L++ ++ + S P+V Y+E+IKK+ +
Sbjct: 409 DPSLKLERQEETGELLLWGHGELHLATAKER-LQDYGVEVEFSVPKVPYRETIKKVAEGQ 467
Query: 483 GKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINY 542
GKY KQ+GG GQYG V +R+EP S + F+ I GG IP ++ AIE+GI
Sbjct: 468 GKYKKQTGGHGQYGDVWLRLEPAS-----EYGFEWRITGGVIPSKYQEAIEEGIKEAAKK 522
Query: 543 GVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXXXXXSYILEPIMKVEVNL 602
GV+ G+PV+ K + NGS+H VDSS+ +LEPI +++V
Sbjct: 523 GVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLA 582
Query: 603 PSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKGT 656
P E +G V+ D+ +RG I + ++++ +PL E+ Y L T G
Sbjct: 583 PQERVGDVLSDLQARRGRILGMEQEGALSVVHAEVPLAEVLEYYKALPGLTGGA 636
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 652 NTKGTIGHVDHGKTTLTAALT-KVSSEIYGGEVR-AFDTIDNAPEEKERGITISTSHVEY 709
T +GH GKTTLT AL K ++ G V T D PE K T+ T
Sbjct: 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL 69
Query: 710 ESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPN 769
+D PG+ D++ + D A++ SA G T +A ++G+P
Sbjct: 70 LFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPR 129
Query: 770 IVV 772
+VV
Sbjct: 130 MVV 132
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 178/654 (27%), Positives = 303/654 (46%), Gaps = 67/654 (10%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
NIG++AHVDAGKTT TE +L+ SG+ ++G V GTT TD E++RGITI + S
Sbjct: 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ 63
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
WE K +NIIDTPGH+DF EV RSL VLDGA+++I A G+Q QT ++ +K
Sbjct: 64 WENTK----VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 119
Query: 130 VPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWK 189
+P + F+NK+D+ G + + DIK+K + +I+ K+
Sbjct: 120 IPTIFFINKIDQNGIDLSTVYQDIKEKLS-------------------AEIVIKQKVELY 160
Query: 190 ENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLVLKN 249
N + + +Q + ND+ LEKY++ + +N
Sbjct: 161 PNVCVTNFTESEQWDT----------VIEGNDD-LLEKYMSGKSLEALELEQEESIRFQN 209
Query: 250 -KIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHD 308
+ P+ GS+ N GI+ L+ I S + + ++ VFKI +
Sbjct: 210 CSLFPLYHGSAKSNIGIDNLIEVITNKFYS-----------STHRGPSELCGNVFKIEYT 258
Query: 309 PFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKD---INDAHFGDIVV 365
L++IR+YSG + + D V S KEKI ++ M+ + + I+ A+ G+IV+
Sbjct: 259 KKRQRLAYIRLYSGVLHLRDSVRVSE---KEKI-KVTEMYTSINGELCKIDRAYSGEIVI 314
Query: 366 IVG--LKESST-GDTLCSLSENIQLENXXXXXXXXXXXXXXXFKNDQEKLLNILQKFCKE 422
+ LK +S GDT L + ++EN +E LL+ L +
Sbjct: 315 LQNEFLKLNSVLGDTKL-LPQRKKIENPHPLLQTTVEPSK---PEQREMLLDALLEISDS 370
Query: 423 DPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIVTQE 482
DP L +++ T E ILS +G++ +E+I + ++ +++ ++ +P V Y E + + E
Sbjct: 371 DPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYME--RPLKNAE 428
Query: 483 GKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINY 542
+ + + + + P+ L + ++S + G + + F A+ +GI
Sbjct: 429 YTIHIEVPPNPFWASIGLSVSPLPLGS--GMQYESSVSLGYLNQSFQNAVMEGIRYGCEQ 486
Query: 543 GVVLGYPVIKIKVFLVNGSFHSVDSSEYXXXXXXXXXXXXXXXXXXSYILEPIMKVEVNL 602
G + G+ V K+ G ++S S+ + +LEP + ++
Sbjct: 487 G-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYA 545
Query: 603 PSEFLGIVVGDINKK-RGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKG 655
P E+L D K I++T + + N I++ IP R + Y +DL T G
Sbjct: 546 PQEYLSRAYNDAPKYCANIVDTQLKN-NEVILSGEIPARCIQEYRSDLTFFTNG 598
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 78/146 (53%), Gaps = 5/146 (3%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEI--YGGEVRAFDTIDNAPEEKERGITISTSHVEYESE 712
G + HVD GKTTLT +L S I G + DN E++RGITI T ++ E
Sbjct: 6 GVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE 65
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
N +D PGH D++ + + +DGAIL+ SA DG QTR R++G+P I
Sbjct: 66 NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTI-F 124
Query: 773 FLNKADCVQDKELLDLVEMEIRELLT 798
F+NK D Q+ L V +I+E L+
Sbjct: 125 FINKID--QNGIDLSTVYQDIKEKLS 148
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 160 bits (404), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 192/376 (51%), Gaps = 57/376 (15%)
Query: 657 IGHVDHGKTTLTAAL--------------TKVSSEIYGGEVRAFD-TIDNAPEEKERGIT 701
IGHVDHGK+TL L + +++ G E F +D EE+ERG+T
Sbjct: 12 IGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVT 71
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMP-------Q 754
I+ + + +E++ + +D PGH D++KNMITGA+Q D AILV SA G Q
Sbjct: 72 INLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQ 131
Query: 755 TREHILLARQVGVPNIVVFLNKADCVQD-------KELLDLVEMEIRELLTEYDFDGENT 807
TREHI+LA+ +G+ ++V +NK D + KE++D ++ + + Y F+
Sbjct: 132 TREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVD----QVSKFMRSYGFNTNKV 187
Query: 808 KIVIGSALLALEG-----KDDNQ--LGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDV 860
+ V ++A G K +N ++++ LD L+ P + DKP +PI+DV
Sbjct: 188 RFV---PVVAPSGDNITHKSENMKWYNGPTLEEYLDQLE----LPPKPVDKPLRIPIQDV 240
Query: 861 FSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGIL 920
+SISG GTV G++E G++K G++I + + + IE +D+ G+N+G
Sbjct: 241 YSISGVGTVPVGRVESGVLKVGDKIVFMPAGKV--GEVRSIETHHTKMDKAEPGDNIGFN 298
Query: 921 LRSVKREEVERGQVLAKIGSIKS-YNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTD 979
+R V++++++RG V+ + + + F + ++ T NGY P + T
Sbjct: 299 VRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVVWHP-----TALANGYTPVLHVHTAS 353
Query: 980 VTGICKLPENVEMVLP 995
V C++ E V + P
Sbjct: 354 VA--CRVSELVSKLDP 367
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 29/173 (16%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSG------------SSHKIG-EVHHGTTITDWMQQEQE 56
N+ +I HVD GK+T R+L G ++ K+G E + D +++E+E
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG--- 113
RG+TI F KY IID PGH DF + D A++++ A G
Sbjct: 68 RGVTINLT----FMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYE 123
Query: 114 ----IQPQTETVWFQSQKYKVPKMIF-VNKMDRIGANYNNC----IIDIKKKF 157
++ QT ++ + ++I VNKMD Y+ I+D KF
Sbjct: 124 AGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKF 176
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 176/357 (49%), Gaps = 45/357 (12%)
Query: 657 IGHVDHGKTTLTAAL--------------TKVSSEIYGGEVRAFDTI-DNAPEEKERGIT 701
IGHVDHGK+TL L + ++ G E F I D EE+ERGIT
Sbjct: 12 IGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGIT 71
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMP-------Q 754
I + +++E++ + +D PGH D++KNMITGA+Q D AILV SA G Q
Sbjct: 72 IDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQ 131
Query: 755 TREHILLARQVGVPNIVVFLNKADCVQ---DKELLDLVEMEIRELLTEYDFDGENTKIVI 811
TREH+LLAR +G+ I+V +NK D D++ + V +++ + + + +
Sbjct: 132 TREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIP 191
Query: 812 GSALLALEGKDDNQLGTTS------IKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISG 865
SA K DN + + L++ LD P P + DKP +P+++V+SI G
Sbjct: 192 VSAW-----KGDNLIERSPNMPWYNGPTLVEALDQLQP-PAKPVDKPLRIPVQNVYSIPG 245
Query: 866 RGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVK 925
GTV G++E G+++ G+ ++V + + IEM + L + G+N+G +R V
Sbjct: 246 AGTVPVGRVETGVLRVGD--KVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNIGFAVRGVS 303
Query: 926 REEVERGQVLAKIGSIKS-YNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVT 981
+ +++RG V + + FE ++++ GY P + T V+
Sbjct: 304 KSDIKRGDVAGHLDKPPTVAEEFEARIFVIWHPSA-----ITVGYTPVIHVHTASVS 355
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 29/173 (16%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSG-------------SSHKIGEVHHGTTITDWMQQEQE 56
N+ +I HVD GK+T +L+ G + + E I D M++E+E
Sbjct: 8 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 67
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG--- 113
RGITI F + KY+ IID PGH DF + D A++++ A G
Sbjct: 68 RGITIDLT----FMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFE 123
Query: 114 ----IQPQTETVWFQSQKYKVPKMIF-VNKMDRIGANYNN----CIIDIKKKF 157
+ QT ++ + ++I VNKMD NY+ ++ + KKF
Sbjct: 124 AGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKF 176
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 177/357 (49%), Gaps = 45/357 (12%)
Query: 657 IGHVDHGKTTLTAAL--------------TKVSSEIYGGEVRAFDTI-DNAPEEKERGIT 701
IGHVDHGK+TL L + ++ G E F I D EE+ERGIT
Sbjct: 15 IGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGIT 74
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMP-------Q 754
I + +++E++ + +D PGH D++KNMITGA+Q D AILV SA G Q
Sbjct: 75 IDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQ 134
Query: 755 TREHILLARQVGVPNIVVFLNKADCVQ---DKELLDLVEMEIRELLTEYDFDGENTKIVI 811
TREH+LLAR +G+ I+V +NK D D++ + V +++ + + + +
Sbjct: 135 TREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIP 194
Query: 812 GSALLALEGKDDNQLGTT------SIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISG 865
SA K DN + + + L++ LD P P + DKP +P+++V+SI G
Sbjct: 195 VSAW-----KGDNLIERSPNMPWYNGPTLVEALDQLQP-PAKPVDKPLRIPVQNVYSIPG 248
Query: 866 RGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVK 925
GTV G++E G+++ G+ ++V + + IEM + L + G+N+G +R V
Sbjct: 249 AGTVPVGRVETGVLRVGD--KVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNIGFAVRGVS 306
Query: 926 REEVERGQVLAKIGSIKS-YNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVT 981
+ +++RG V + + FE ++++ GY P + T V+
Sbjct: 307 KSDIKRGDVAGHLDKPPTVAEEFEARIFVIWHPSA-----ITVGYTPVIHVHTASVS 358
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 29/173 (16%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSG-------------SSHKIGEVHHGTTITDWMQQEQE 56
N+ +I HVD GK+T +L+ G + + E I D M++E+E
Sbjct: 11 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 70
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG--- 113
RGITI F + KY+ IID PGH DF + D A++++ A G
Sbjct: 71 RGITIDLT----FMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFE 126
Query: 114 ----IQPQTETVWFQSQKYKVPKMIF-VNKMDRIGANYNN----CIIDIKKKF 157
+ QT ++ + ++I VNKMD NY+ ++ + KKF
Sbjct: 127 AGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKF 179
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 124/481 (25%), Positives = 210/481 (43%), Gaps = 66/481 (13%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEV------HHGTTITDWMQQEQERGITITS 63
II+H DAGKTT TE++L + G+ G V H T+ DWM E+ERGI++T+
Sbjct: 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATS--DWMAMERERGISVTT 90
Query: 64 ASVSIFWEVNKFKY---MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET 120
+ V +F Y ++N++DTPGH DF+ + R L +D A+++I A+ G++ QT
Sbjct: 91 S-------VMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK 143
Query: 121 VWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDI 180
+ + P M FVNKMDR + + + DI++ P+ + IG+ +++G D+
Sbjct: 144 LMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDL 203
Query: 181 INKKSFFWK-------ENSIIIKNIDKDQLSAF--DYYNELMLETL---SNNDEFFLEKY 228
++K+ + ++ I+I D QL + D +L ++ F E+Y
Sbjct: 204 LHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERY 263
Query: 229 INNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNND 288
LK ++ P+ GS++ N G+ +L+ E+ P P
Sbjct: 264 ------------------LKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATR- 304
Query: 289 YNINLNSNKFVSLVFKI---FHDPFLGSLSFIRIYSG-FIKVGDLVYNSTKK----VKEK 340
+ F +VFKI ++F+RI SG F + L ++ T K
Sbjct: 305 -VVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANAT 363
Query: 341 IFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXX 400
IF A + + +A GDI+ I GDT E ++
Sbjct: 364 IF-----MAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGIPNFAPEHFRR 418
Query: 401 XXXXFKNDQEKLLNILQKFCKEDP-SLLLSINNNTGETILSGMGELHLEIIVDRILKENN 459
++L L++ +E L + NN + IL +G L ++IV R+ E
Sbjct: 419 VRLKNPLKAKQLQKGLEQLAEEGAVQLFRPLVNN--DYILGAVGVLQFDVIVARLADEYG 476
Query: 460 I 460
+
Sbjct: 477 V 477
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 653 TKGTIGHVDHGKTTLTAALTKVSSEI-YGGEVRA-----FDTIDNAPEEKERGITISTSH 706
T I H D GKTTLT L I G V+A T D E+ERGI+++TS
Sbjct: 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSV 92
Query: 707 VEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVG 766
+++ ++ +D PGH D+ ++ +D A++V A G QTR+ + + R
Sbjct: 93 MQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRA 152
Query: 767 VPNIVVFLNKAD 778
P ++ F+NK D
Sbjct: 153 TP-VMTFVNKMD 163
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 175/373 (46%), Gaps = 48/373 (12%)
Query: 657 IGHVDHGKTTLTAAL---------------TKVSSEIYGGEVRAFDTIDNAPEEKERGIT 701
IGHVD GK+T T L K ++E+ G + +D E+ERGIT
Sbjct: 13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGIT 72
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMP-------Q 754
I + ++E+ +D PGH D+IKNMITG +Q D AIL+ + G Q
Sbjct: 73 IDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQ 132
Query: 755 TREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDF----------- 802
TREH LLA +GV ++V +NK D V+ D+ + E + + +
Sbjct: 133 TREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPIS 192
Query: 803 --DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDV 860
+G+N +A + + + G K LL+ +D +I P+R TDKP +P++DV
Sbjct: 193 GWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAID-AIEQPSRPTDKPLRLPLQDV 251
Query: 861 FSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGIL 920
+ I G GTV G++E G++K G + + T + +EM + L++G+ G+NVG
Sbjct: 252 YKIGGIGTVPVGRVETGVIKPGMVVTFA--PAGVTTEVKSVEMHHEQLEQGVPGDNVGFN 309
Query: 921 LRSVKREEVERGQVL--AKIGSIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTT 978
+++V +E+ RG V AK K F V +L+ GY P T
Sbjct: 310 VKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLN-----HPGQISAGYSPVLDCHTA 364
Query: 979 DVTGICKLPENVE 991
+ C+ E +E
Sbjct: 365 HIA--CRFDELLE 375
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHK---------IGEVHHGTTITDW----MQQEQE 56
N+ +I HVD+GK+TTT +++ G K E+ G+ W ++ E+E
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG 113
RGITI A W+ KY + +ID PGH DF + D A++II G
Sbjct: 69 RGITIDIA----LWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 121
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 116/475 (24%), Positives = 226/475 (47%), Gaps = 48/475 (10%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV------HHGTTITDWMQQEQERGITIT 62
R II+H DAGKTT TE++L + + G V H + DWM+ E++RGI+IT
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKS--DWMEMEKQRGISIT 71
Query: 63 SASVSIFWEVNKFKY---MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE 119
++ V +F Y ++N++DTPGH DF+ + R+L +D +++I A+ G++ +T
Sbjct: 72 TS-------VMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR 124
Query: 120 TVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVD 179
+ ++ P + F+NK+DR + + +++ + PI + IG + ++G+
Sbjct: 125 KLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYH 184
Query: 180 IINKKSFFWK-------ENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN 232
+ +++ ++ + I+K ++ L A E + + L DE L K +N
Sbjct: 185 LYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDA--AVGEDLAQQL--RDELELVKGASNE 240
Query: 233 YSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNIN 292
+ ++L L +I P+ G++L N G++ +L+ + E+ P+P + + + +
Sbjct: 241 FD--------KELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAP--MPRQTDTRTVE 290
Query: 293 LNSNKFVSLVFKIFH--DP-FLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFR-ILRMF 348
+ +KF VFKI DP ++F+R+ SG + G + + K+ + L
Sbjct: 291 ASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKG-MKLRQVRTAKDVVISDALTFM 349
Query: 349 ANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKND 408
A + + +A+ GDI+ + GDT E ++
Sbjct: 350 AGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQ-GEMMKFTGIPNFAPELFRRIRLKDPLK 408
Query: 409 QEKLLNILQKFCKEDP-SLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKT 462
Q++LL L + +E + I+NN + I+ +G L +++V R+ E N++
Sbjct: 409 QKQLLKGLVQLSEEGAVQVFRPISNN--DLIVGAVGVLQFDVVVARLKSEYNVEA 461
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 9/153 (5%)
Query: 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIY-GGEVRAFDTIDNAPE-----EKERGITIS 703
+ T I H D GKTT+T + I G V+ + +A EK+RGI+I+
Sbjct: 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISIT 71
Query: 704 TSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLAR 763
TS +++ + +D PGH D+ ++ +D ++V A G +TR+ + + R
Sbjct: 72 TSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR 131
Query: 764 QVGVPNIVVFLNKADC-VQDK-ELLDLVEMEIR 794
P I+ F+NK D ++D ELLD VE E++
Sbjct: 132 LRDTP-ILTFMNKLDRDIRDPMELLDEVENELK 163
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 116/475 (24%), Positives = 226/475 (47%), Gaps = 48/475 (10%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV------HHGTTITDWMQQEQERGITIT 62
R II+H DAGKTT TE++L + + G V H + DWM+ E++RGI+IT
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKS--DWMEMEKQRGISIT 71
Query: 63 SASVSIFWEVNKFKY---MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE 119
++ V +F Y ++N++DTPGH DF+ + R+L +D +++I A+ G++ +T
Sbjct: 72 TS-------VMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR 124
Query: 120 TVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVD 179
+ ++ P + F+NK+DR + + +++ + PI + IG + ++G+
Sbjct: 125 KLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYH 184
Query: 180 IINKKSFFWK-------ENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN 232
+ +++ ++ + I+K ++ L A E + + L DE L K +N
Sbjct: 185 LYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDA--AVGEDLAQQL--RDELELVKGASNE 240
Query: 233 YSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNIN 292
+ ++L L +I P+ G++L N G++ +L+ + E+ P+P + + + +
Sbjct: 241 FD--------KELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAP--MPRQTDTRTVE 290
Query: 293 LNSNKFVSLVFKIFH--DP-FLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFR-ILRMF 348
+ +KF VFKI DP ++F+R+ SG + G + + K+ + L
Sbjct: 291 ASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKG-MKLRQVRTAKDVVISDALTFM 349
Query: 349 ANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKND 408
A + + +A+ GDI+ + GDT E ++
Sbjct: 350 AGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQ-GEMMKFTGIPNFAPELFRRIRLKDPLK 408
Query: 409 QEKLLNILQKFCKEDP-SLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKT 462
Q++LL L + +E + I+NN + I+ +G L +++V R+ E N++
Sbjct: 409 QKQLLKGLVQLSEEGAVQVFRPISNN--DLIVGAVGVLQFDVVVARLKSEYNVEA 461
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 9/153 (5%)
Query: 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIY-GGEVRAFDTIDNAPE-----EKERGITIS 703
+ T I H D GKTT+T + I G V+ + +A EK+RGI+I+
Sbjct: 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISIT 71
Query: 704 TSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLAR 763
TS +++ + +D PGH D+ ++ +D ++V A G +TR+ + + R
Sbjct: 72 TSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR 131
Query: 764 QVGVPNIVVFLNKADC-VQDK-ELLDLVEMEIR 794
P I+ F+NK D ++D ELLD VE E++
Sbjct: 132 LRDTP-ILTFMNKLDRDIRDPMELLDEVENELK 163
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 158/293 (53%), Gaps = 33/293 (11%)
Query: 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHV 707
D ++ G GH+DHGKTTL+ LT+++S D PE ++RGITI
Sbjct: 16 DFKNINLGIFGHIDHGKTTLSKVLTEIAST---------SAHDKLPESQKRGITIDIGFS 66
Query: 708 EYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGV 767
++ EN VD PGHAD I+ +++ A +D A++V A +GP QT EH+L+ +
Sbjct: 67 AFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNI 126
Query: 768 PNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLG 827
P I+V + K+D +E + EM ++ +L ++T + S+++ + K G
Sbjct: 127 P-IIVVITKSDNAGTEE-IKRTEMIMKSIL-------QSTHNLKNSSIIPISAK--TGFG 175
Query: 828 TTSIKKLLDVLDSSIPTPN-----RITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNG 882
+K L+ I T N R T+ F MP++ F I G GTVVTG I +GIVK G
Sbjct: 176 VDELKNLI------ITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVG 229
Query: 883 EEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVL 935
+E++++ + T + I+ FK+++ E AG+ VG+ ++ V +++ RG +L
Sbjct: 230 DELKVLPINMS--TKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXIL 280
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 10 NIGIIAHVDAGKTTTTERIL-FYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
N+GI H+D GKTT ++ + S S+H D + + Q+RGITI S
Sbjct: 21 NLGIFGHIDHGKTTLSKVLTEIASTSAH------------DKLPESQKRGITI-DIGFSA 67
Query: 69 FWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128
F N Y I ++D PGH D V + ++D A+I++ A G + QT +
Sbjct: 68 FKLEN---YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF 124
Query: 129 KVPKMIFVNKMDRIG 143
+P ++ + K D G
Sbjct: 125 NIPIIVVITKSDNAG 139
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 140 bits (353), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 124/472 (26%), Positives = 213/472 (45%), Gaps = 45/472 (9%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV------HHGTTITDWMQQEQERGITIT 62
R II+H DAGKTT TE++L + G+ G + H T+ DW + E++RGI++T
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATS--DWXELEKQRGISVT 71
Query: 63 SASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW 122
++ ++ Y+IN++DTPGH DFT + R+L +D A+ +I A+ G++P+T +
Sbjct: 72 TSVXQFPYK----DYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIKLX 127
Query: 123 FQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIIN 182
+ P F+NK DR + +I+ P+ + IG + ++GI +I
Sbjct: 128 EVCRLRHTPIXTFINKXDRDTRPSIELLDEIESILRIHCAPVTWPIGXGKYFKGIYHLIE 187
Query: 183 KKSFFWKEN-------SIIIKNIDKDQLSA--FDYYNELMLETLSNNDEFFLEKYINNNY 233
+ ++ S I+ I+ +L D +EL +E L K ++ +
Sbjct: 188 DAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASEL-------RNEIELVKGASHPF 240
Query: 234 SINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINL 293
R+ LK ++ PI GS++ N G+ LL++ + P P + N +
Sbjct: 241 E--------REGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRE--TNSRLVKP 290
Query: 294 NSNKFVSLVFKIF--HDP-FLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFAN 350
KF VFKI DP ++F+RI SG + G Y+ K + +I L A
Sbjct: 291 EEEKFSGFVFKIQANXDPGHRDRIAFLRIASGQYQKGXKAYHVRLKKEIQINNALTFXAG 350
Query: 351 SKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKNDQE 410
+++ +A GDI+ + GDT E + Q+
Sbjct: 351 KRENAEEAWPGDIIGLHNHGTIQIGDTFTQ-GERFKFTGIPNFASELFRLVRLKDPLKQK 409
Query: 411 KLLNILQKFCKEDPS-LLLSINNNTGETILSGMGELHLEIIVDRILKENNIK 461
LL L + +E + L +++N E IL +G L +++ R+ E N+K
Sbjct: 410 ALLKGLTQLSEEGATQLFRPLDSN--ELILGAVGLLQFDVVAYRLENEYNVK 459
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 19/156 (12%)
Query: 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTI-----------DNAPEEKERGI 700
T I H D GKTTLT L ++GG ++ TI D EK+RGI
Sbjct: 14 RTFAIISHPDAGKTTLTEKLL-----LFGGAIQLAGTIKSRKAARHATSDWXELEKQRGI 68
Query: 701 TISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHIL 760
+++TS ++ ++ +D PGHAD+ ++ +D A+ V A G P+T +
Sbjct: 69 SVTTSVXQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIKLXE 128
Query: 761 LARQVGVPNIVVFLNKA--DCVQDKELLDLVEMEIR 794
+ R P I F+NK D ELLD +E +R
Sbjct: 129 VCRLRHTP-IXTFINKXDRDTRPSIELLDEIESILR 163
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 157/326 (48%), Gaps = 33/326 (10%)
Query: 657 IGHVDHGKTT-------LTAALTKVSSEIYGGEVRAFD--------TIDNAPEEKERGIT 701
IGHVD GK+T LT + K + E Y E + + +D EE+++G T
Sbjct: 23 IGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKT 82
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMP-------Q 754
+ +E+E KH+ +D PGH ++ NMI GA+Q D A+LV SA G Q
Sbjct: 83 VEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQ 142
Query: 755 TREHILLARQVGVPNIVVFLNKAD---CVQDKELLDLVEMEIRELLTEYDFDG-ENTKIV 810
TREH +LA+ GV +++V +NK D E + + ++ L + F+ ++ +
Sbjct: 143 TREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFM 202
Query: 811 IGSALLALEGKDDNQLGTTSIK-KLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTV 869
S L K+ + I + LD ++P NR D P +PI D + GTV
Sbjct: 203 PCSGLTGANLKEQSDFCPWYIGLPFIPYLD-NLPNFNRSVDGPIRLPIVDKY--KDMGTV 259
Query: 870 VTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEV 929
V GK+E G + G+++ ++ K ++ + GI D GEN+ I L+ ++ EE+
Sbjct: 260 VLGKLESGSIFKGQQLVMMPNKHNVE--VLGILSDDTETDFVAPGENLKIRLKGIEEEEI 317
Query: 930 ERGQVLAKIGSI-KSYNIFECEVYIL 954
G +L ++ S F+ ++ I+
Sbjct: 318 LPGFILCDPSNLCHSGRTFDVQIVII 343
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 31/163 (19%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSG-------------SSHKIGEVHHGTTITDWMQQEQE 56
N+ I HVDAGK+T +I++ +G + K E + + D Q+E++
Sbjct: 19 NVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 78
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQP 116
+G T+ ++E K + I+D PGH F + D AV++I A G
Sbjct: 79 KGKTVEVGRA--YFETEKKHF--TILDAPGHKSFVPNMIGGASQADLAVLVISARKG--- 131
Query: 117 QTETVWFQSQKYKVPKM-----------IFVNKMDRIGANYNN 148
+ ET + + + + M + +NKMD N++N
Sbjct: 132 EFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 174
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 162/335 (48%), Gaps = 47/335 (14%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVR---------AFDTIDNAPEEKERGITISTS 705
G +GHVDHGKTTLT ALT V ++ + E+R A I P +
Sbjct: 14 GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCP 73
Query: 706 HVEYESE-NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-PMPQTREHILLAR 763
+ +E+E + + +D PGH + M+ GA+ MDGAILV +A + P PQTREH++ +
Sbjct: 74 YCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ 133
Query: 764 QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDD 823
+G NI++ NK + V ++ L+ +I+E + EN I+ SAL
Sbjct: 134 IIGQKNIIIAQNKIELVDKEKALENYR-QIKEFIE--GTVAENAPIIPISALHG------ 184
Query: 824 NQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGT--------VVTGKIE 875
+I L+ ++ IPTP R +KP M + F ++ GT V+ G I
Sbjct: 185 -----ANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIV 239
Query: 876 RGIVKNGEEIEI---VGYK-------QTIKTTITGIEMFKKTLDEGLAGENVGI---LLR 922
+G +K G+EIEI V Y+ + I T I ++ + ++E G VG+ L
Sbjct: 240 QGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDP 299
Query: 923 SVKREEVERGQVLAKIGSIKS-YNIFECEVYILSK 956
+ + ++ G V+ K G + ++ EV++L +
Sbjct: 300 YLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLER 334
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQER-----GITITSA 64
NIG++ HVD GKTT T+ + +H E+ G TI + R G TS
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGVWTDTHS-EELRRGITIKIGFADAEIRRCPNCGRYSTSP 70
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQT 118
+F ++ ID PGH + ++DGA+++I A+ +PQT
Sbjct: 71 VCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQT 125
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 162/335 (48%), Gaps = 47/335 (14%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVR---------AFDTIDNAPEEKERGITISTS 705
G +GHVDHGKTTLT ALT V ++ + E+R A I P +
Sbjct: 14 GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCP 73
Query: 706 HVEYESE-NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-PMPQTREHILLAR 763
+ +E+E + + +D PGH + M+ GA+ MDGAILV +A + P PQTREH++ +
Sbjct: 74 YCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ 133
Query: 764 QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDD 823
+G NI++ NK + V ++ L+ +I+E + EN I+ SAL
Sbjct: 134 IIGQKNIIIAQNKIELVDKEKALENYR-QIKEFIE--GTVAENAPIIPISALHG------ 184
Query: 824 NQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGT--------VVTGKIE 875
+I L+ ++ IPTP R +KP M + F ++ GT V+ G I
Sbjct: 185 -----ANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLGGSIV 239
Query: 876 RGIVKNGEEIEI---VGYK-------QTIKTTITGIEMFKKTLDEGLAGENVGI---LLR 922
+G +K G+EIEI V Y+ + I T I ++ + ++E G VG+ L
Sbjct: 240 QGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDP 299
Query: 923 SVKREEVERGQVLAKIGSIKS-YNIFECEVYILSK 956
+ + ++ G V+ K G + ++ EV++L +
Sbjct: 300 YLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLER 334
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQER-----GITITSA 64
NIG++ HVD GKTT T+ + +H E+ G TI + R G TS
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGVWTDTHS-EELRRGITIKIGFADAEIRRCPNCGRYSTSP 70
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQT 118
+F ++ ID PGH + ++DGA+++I A+ +PQT
Sbjct: 71 VCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQT 125
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 106/335 (31%), Positives = 166/335 (49%), Gaps = 47/335 (14%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTID--NAPEEKERGITI---STS---- 705
G +GHVDHGKTTLT ALT V ++ + E+R TI A E R STS
Sbjct: 15 GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCSNCGRYSTSPICP 74
Query: 706 HVEYESEN-KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-PMPQTREHILLAR 763
+ +E+E + + +D PGH + M+ GA+ MDGAILV +A + P PQTREH++ +
Sbjct: 75 YCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ 134
Query: 764 QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDD 823
+G NI++ NK + V ++ L+ +I+E + EN I+ SAL
Sbjct: 135 IIGQKNIIIAQNKIELVDKEKALENYR-QIKEFIK--GTVAENAPIIPISALHG------ 185
Query: 824 NQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGT--------VVTGKIE 875
+I L+ ++ IPTP R ++KP M + F ++ GT V+ G I
Sbjct: 186 -----ANIDVLVKAIEEFIPTPKRDSNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIV 240
Query: 876 RGIVKNGEEIEI---VGYK-------QTIKTTITGIEMFKKTLDEGLAGENVGI---LLR 922
+G +K G+EIEI V Y+ + I T I ++ + ++E G VGI L
Sbjct: 241 QGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGIGTKLDP 300
Query: 923 SVKREEVERGQVLAKIGSIKS-YNIFECEVYILSK 956
+ + ++ G V+ K G + + EV++L +
Sbjct: 301 YLTKGDLMAGNVVGKPGKLPPVWTDLRLEVHLLER 335
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQER-----GITITSA 64
NIG++ HVD GKTT T+ + +H E+ G TI + R G TS
Sbjct: 13 NIGMVGHVDHGKTTLTKALTGVWTDTHS-EELRRGITIKIGFADAEIRRCSNCGRYSTSP 71
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQT 118
+F ++ ID+PGH + ++DGA+++I A+ +PQT
Sbjct: 72 ICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQT 126
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 96/155 (61%), Gaps = 18/155 (11%)
Query: 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSG--SSHKIGEVHHGTTITDWMQQEQERG 58
+ +KV RN+ +IAHVD GK+T T+ ++ +G S+ K GE TD + EQERG
Sbjct: 12 LMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEAR----FTDTRKDEQERG 67
Query: 59 ITITSASVSIFWE-----VNKFK-------YMINIIDTPGHVDFTIEVERSLRVLDGAVI 106
ITI S ++S++ E V + K ++IN+ID+PGHVDF+ EV +LRV DGA++
Sbjct: 68 ITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALV 127
Query: 107 IICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDR 141
++ G+ QTETV Q+ ++ ++ +NK+DR
Sbjct: 128 VVDTIEGVCVQTETVLRQALGERIKPVVVINKVDR 162
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 84/400 (21%), Positives = 167/400 (41%), Gaps = 64/400 (16%)
Query: 315 SFIRIYSGFIKVGDLVY----NSTKKVKEKIF-----RILRMFANSKKDINDAHFGDIVV 365
+F R+++G +K G V N K+ +F R++ M + I+D G+I+
Sbjct: 396 AFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIG 455
Query: 366 IVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKN--DQEKLLNILQKFCKED 423
+VG+ + + SE KN D KL+ L++ K D
Sbjct: 456 LVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSD 515
Query: 424 PSLLLSINNNTGETILSGMGELHLEIIVDRILKEN-NIKTKISKPQVSYKESIKKIVTQE 482
P +L ++ +GE I++G GELHLEI + + ++ + KIS P V+Y+E+++ E
Sbjct: 516 PCVLTYMSE-SGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVE----SE 570
Query: 483 GKYIKQSGGKGQYGHVVIRIEPI------SLEN-----KENFIFKSEIIG---------- 521
S ++ + ++ EPI ++EN +++F ++ I+
Sbjct: 571 SSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDA 630
Query: 522 ---------GSIPK---------EFIPAIEKGIMNQINY----GVVLGYPVIKIKVFLVN 559
G+ P +++ I+ ++ + G + G + ++V +++
Sbjct: 631 RKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILD 690
Query: 560 GSFH--SVDSSEYXXXXXXXXXXXXXXXXXXSYILEPIMKVEVNLPSEFLGIVVGDINKK 617
+ H ++ I EP+ VE+ P + +G + +NKK
Sbjct: 691 VTLHADAIXRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKK 750
Query: 618 RGIINTIIDHENFKI--INSYIPLRELFGYSTDLRSNTKG 655
RG + + + + +Y+P+ E FG++ +LR T G
Sbjct: 751 RGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGG 790
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 33/171 (19%)
Query: 639 LRELFGYSTDLRSNTKGTIGHVDHGKTTLTAALTKVS---SEIYGGEVRAFDTIDNAPEE 695
+R L T++R+ + I HVDHGK+TLT +L + + S GE R DT +E
Sbjct: 9 MRSLMDKVTNVRNMS--VIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDT---RKDE 63
Query: 696 KERGITISTSHVEYESE---------------NKHYAH-VDCPGHADYIKNMITGAAQMD 739
+ERGITI ++ + SE N + +D PGH D+ + D
Sbjct: 64 QERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTD 123
Query: 740 GAILVCSAVDGPMPQTREHILLARQVGVPNI--VVFLNKADCVQDKELLDL 788
GA++V ++G QT E +L RQ I VV +NK D+ LL+L
Sbjct: 124 GALVVVDTIEGVCVQT-ETVL--RQALGERIKPVVVINKV----DRALLEL 167
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 96/155 (61%), Gaps = 18/155 (11%)
Query: 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSG--SSHKIGEVHHGTTITDWMQQEQERG 58
+ +KV RN+ +IAHVD GK+T T+ ++ +G S+ K GE TD + EQERG
Sbjct: 12 LMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEAR----FTDTRKDEQERG 67
Query: 59 ITITSASVSIFWE-----VNKFK-------YMINIIDTPGHVDFTIEVERSLRVLDGAVI 106
ITI S ++S++ E V + K ++IN+ID+PGHVDF+ EV +LRV DGA++
Sbjct: 68 ITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALV 127
Query: 107 IICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDR 141
++ G+ QTETV Q+ ++ ++ +NK+DR
Sbjct: 128 VVDTIEGVCVQTETVLRQALGERIKPVVVINKVDR 162
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 84/400 (21%), Positives = 167/400 (41%), Gaps = 64/400 (16%)
Query: 315 SFIRIYSGFIKVGDLVY----NSTKKVKEKIF-----RILRMFANSKKDINDAHFGDIVV 365
+F R+++G +K G V N K+ +F R++ M + I+D G+I+
Sbjct: 396 AFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIG 455
Query: 366 IVGLKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKN--DQEKLLNILQKFCKED 423
+VG+ + + SE KN D KL+ L++ K D
Sbjct: 456 LVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSD 515
Query: 424 PSLLLSINNNTGETILSGMGELHLEIIVDRILKEN-NIKTKISKPQVSYKESIKKIVTQE 482
P +L ++ +GE I++G GELHLEI + + ++ + KIS P V+Y+E+++ E
Sbjct: 516 PCVLTYMSE-SGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVE----SE 570
Query: 483 GKYIKQSGGKGQYGHVVIRIEPI------SLEN-----KENFIFKSEIIG---------- 521
S ++ + ++ EPI ++EN +++F ++ I+
Sbjct: 571 SSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDA 630
Query: 522 ---------GSIPK---------EFIPAIEKGIMNQINY----GVVLGYPVIKIKVFLVN 559
G+ P +++ I+ ++ + G + G + ++V +++
Sbjct: 631 RKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILD 690
Query: 560 GSFH--SVDSSEYXXXXXXXXXXXXXXXXXXSYILEPIMKVEVNLPSEFLGIVVGDINKK 617
+ H ++ I EP+ VE+ P + +G + +NKK
Sbjct: 691 VTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKK 750
Query: 618 RGIINTIIDHENFKI--INSYIPLRELFGYSTDLRSNTKG 655
RG + + + + +Y+P+ E FG++ +LR T G
Sbjct: 751 RGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGG 790
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 33/171 (19%)
Query: 639 LRELFGYSTDLRSNTKGTIGHVDHGKTTLTAALTKVS---SEIYGGEVRAFDTIDNAPEE 695
+R L T++R+ + I HVDHGK+TLT +L + + S GE R DT +E
Sbjct: 9 MRSLMDKVTNVRNMS--VIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDT---RKDE 63
Query: 696 KERGITISTSHVEYESE---------------NKHYAH-VDCPGHADYIKNMITGAAQMD 739
+ERGITI ++ + SE N + +D PGH D+ + D
Sbjct: 64 QERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTD 123
Query: 740 GAILVCSAVDGPMPQTREHILLARQVGVPNI--VVFLNKADCVQDKELLDL 788
GA++V ++G QT E +L RQ I VV +NK D+ LL+L
Sbjct: 124 GALVVVDTIEGVCVQT-ETVL--RQALGERIKPVVVINKV----DRALLEL 167
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 151/315 (47%), Gaps = 47/315 (14%)
Query: 657 IGHVDHGKTTL-------TAALTKVSSEIYGGEVRAFD--------TIDNAPEEKERGIT 701
IGHVD GK+TL T + K + E E + +D+ EE+E+G T
Sbjct: 49 IGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKT 108
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMP-------Q 754
+ +E+E++ ++ +D PGH Y+ NMI GA+Q D +LV SA G Q
Sbjct: 109 VEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ 168
Query: 755 TREHILLARQVGVPNIVVFLNKAD--CVQD-----KELLDLVEMEIRELLTEYDFDGENT 807
TREH +LAR G+ ++VV +NK D VQ KE +D + M +R + G N+
Sbjct: 169 TREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVA------GYNS 222
Query: 808 KI-VIGSALLALEGKDDNQLGTTSI------KKLLDVLDSSIPTPNRITDKPFLMPIEDV 860
K V + A G++ +S+ LL+ LD S+ R + PF+MPI
Sbjct: 223 KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLD-SMTHLERKVNAPFIMPIASK 281
Query: 861 FSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGIL 920
+ GT++ GKIE G +K + ++ QT++ T E + + + G+ V +
Sbjct: 282 Y--KDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEA-DEEISSSICGDQVRLR 338
Query: 921 LRSVKREEVERGQVL 935
+R +V+ G VL
Sbjct: 339 VRG-DDSDVQTGYVL 352
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 17/117 (14%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSG------------SSHKIG-EVHHGTTITDWMQQEQE 56
NI I HVDAGK+T ILF +G + + G E + + D +E+E
Sbjct: 45 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 104
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG 113
+G T+ E +F +++D PGH + + D V++I A G
Sbjct: 105 KGKTVEVGRAYFETEHRRF----SLLDAPGHKGYVTNMINGASQADIGVLVISARRG 157
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 103/179 (57%), Gaps = 9/179 (5%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RN IIAHVD GK+T +R+L Y+G+ I E + D + E+ERGIT+ +V +
Sbjct: 7 RNFCIIAHVDHGKSTLADRLLEYTGA---ISEREKREQLLDTLDVERERGITVKMQAVRM 63
Query: 69 FWEV-NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK 127
F++ + Y +++IDTPGHVDF+ EV R+L +GA+++I AS GI+ QT ++++ +
Sbjct: 64 FYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE 123
Query: 128 YKVPKMIFVNKMDRIGANYNNCIIDIKKKF-----NCIVLPINFNIGIEENYEGIVDII 181
+ + +NK+D A+ + I++ I+ IGIEE E IV+ I
Sbjct: 124 QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRI 182
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 129/276 (46%), Gaps = 29/276 (10%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRA--FDTIDNAPEEKERGITISTSHVE--YESE 712
I HVDHGK+TL L + + I E R DT+D E+ERGIT+ V Y+++
Sbjct: 12 IAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDV---ERERGITVKMQAVRMFYKAK 68
Query: 713 --NKHYAH-VDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPN 769
N + H +D PGH D+ + A +GA+L+ A G QT + A + +
Sbjct: 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDL-V 127
Query: 770 IVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTT 829
I+ +NK D +D V+ +I E+L D E ++ SA EG
Sbjct: 128 IIPVINKIDLPSAD--VDRVKKQIEEVLG---LDPEEA--ILASAK---EG--------I 169
Query: 830 SIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVG 889
I+++L+ + + IP P KP I D + RG V +I G VK G++I ++
Sbjct: 170 GIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMS 229
Query: 890 YKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVK 925
+ + T G + K T + L+ +VG + S+K
Sbjct: 230 TGKEYEVTEVGAQTPKMTKFDKLSAGDVGYIAASIK 265
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 109/241 (45%), Gaps = 31/241 (12%)
Query: 255 MCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSL 314
+ S+ + GIE +L +I +P P D L + L+F ++DP+ G++
Sbjct: 161 ILASAKEGIGIEEILEAIVNRIPPP------KGDPQKPLKA-----LIFDSYYDPYRGAV 209
Query: 315 SFIRIYSGFIKVGD-LVYNSTKKVKEKIFRILRMFANSKK--DINDAHFGDIVVIVG--- 368
+F+RI+ G +K GD ++ ST K + + + A + K + GD+ I
Sbjct: 210 AFVRIFDGEVKPGDKIMLMSTGKE----YEVTEVGAQTPKMTKFDKLSAGDVGYIAASIK 265
Query: 369 -LKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKNDQ---EKLLNILQKFCKEDP 424
+++ GDT+ ++N E + + E+L + L+K+ D
Sbjct: 266 DVRDIRIGDTITH-AKNPTKEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAINDA 324
Query: 425 SLLLSINNNTGETI---LSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIVTQ 481
+++ ++ + + +G LH+EI+ +R+ +E +K + P V Y+ +KK T
Sbjct: 325 AIVYEPESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIYR--VKKKFTD 382
Query: 482 E 482
E
Sbjct: 383 E 383
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 102/179 (56%), Gaps = 9/179 (5%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RN IIAHVD GK+T +R+L Y+G+ I E + D + E+ERGIT+ +V
Sbjct: 7 RNFCIIAHVDHGKSTLADRLLEYTGA---ISEREKREQLLDTLDVERERGITVKXQAVRX 63
Query: 69 FWEV-NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK 127
F++ + Y +++IDTPGHVDF+ EV R+L +GA+++I AS GI+ QT ++++ +
Sbjct: 64 FYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE 123
Query: 128 YKVPKMIFVNKMDRIGANYNNCIIDIKKKF-----NCIVLPINFNIGIEENYEGIVDII 181
+ + +NK+D A+ + I++ I+ IGIEE E IV+ I
Sbjct: 124 QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRI 182
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 128/276 (46%), Gaps = 29/276 (10%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRA--FDTIDNAPEEKERGITISTSHVE--YESE 712
I HVDHGK+TL L + + I E R DT+D E+ERGIT+ V Y+++
Sbjct: 12 IAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDV---ERERGITVKXQAVRXFYKAK 68
Query: 713 --NKHYAH-VDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPN 769
N + H +D PGH D+ + A +GA+L+ A G QT + A + +
Sbjct: 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDL-V 127
Query: 770 IVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTT 829
I+ +NK D +D V+ +I E+L D E ++ SA EG
Sbjct: 128 IIPVINKIDLPSAD--VDRVKKQIEEVLG---LDPEEA--ILASAK---EG--------I 169
Query: 830 SIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVG 889
I+++L+ + + IP P KP I D + RG V +I G VK G++I +
Sbjct: 170 GIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIXLXS 229
Query: 890 YKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVK 925
+ + T G + K T + L+ +VG + S+K
Sbjct: 230 TGKEYEVTEVGAQTPKXTKFDKLSAGDVGYIAASIK 265
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 108/241 (44%), Gaps = 31/241 (12%)
Query: 255 MCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSL 314
+ S+ + GIE +L +I +P P D L + L+F ++DP+ G++
Sbjct: 161 ILASAKEGIGIEEILEAIVNRIPPP------KGDPQKPLKA-----LIFDSYYDPYRGAV 209
Query: 315 SFIRIYSGFIKVGD-LVYNSTKKVKEKIFRILRMFANSKK--DINDAHFGDIVVIVG--- 368
+F+RI+ G +K GD + ST K + + + A + K + GD+ I
Sbjct: 210 AFVRIFDGEVKPGDKIXLXSTGKE----YEVTEVGAQTPKXTKFDKLSAGDVGYIAASIK 265
Query: 369 -LKESSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXFKNDQ---EKLLNILQKFCKEDP 424
+++ GDT+ ++N E + + E+L + L+K+ D
Sbjct: 266 DVRDIRIGDTITH-AKNPTKEPVPGFQPAKPXVYAGIYPAEDTTYEELRDALEKYAINDA 324
Query: 425 SLLLSINNNT--GETILSG-MGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIVTQ 481
+++ ++ G G +G LH EI+ +R+ +E +K + P V Y+ +KK T
Sbjct: 325 AIVYEPESSPALGXGFRVGFLGLLHXEIVQERLEREYGVKIITTAPNVIYR--VKKKFTD 382
Query: 482 E 482
E
Sbjct: 383 E 383
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 157/335 (46%), Gaps = 47/335 (14%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVR---------AFDTIDNAPEEKERGITISTS 705
G +GHVDHGKTTLT ALT V ++ + E+R A I P +
Sbjct: 14 GXVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCP 73
Query: 706 HVEYESE-NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-PMPQTREHILLAR 763
+ +E+E + + +D PGH + GA+ DGAILV +A + P PQTREH+ +
Sbjct: 74 YCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANEPCPRPQTREHLXALQ 133
Query: 764 QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDD 823
+G NI++ NK + V ++ L+ +I+E + EN I+ SAL
Sbjct: 134 IIGQKNIIIAQNKIELVDKEKALENYR-QIKEFIE--GTVAENAPIIPISALHG------ 184
Query: 824 NQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGT--------VVTGKIE 875
+I L+ ++ IPTP R +KP + F ++ GT V+ G I
Sbjct: 185 -----ANIDVLVKAIEDFIPTPKRDPNKPPKXLVLRSFDVNKPGTPPEKLVGGVLGGSIV 239
Query: 876 RGIVKNGEEIEI---VGYK-------QTIKTTITGIEMFKKTLDEGLAGENVGI---LLR 922
+G +K G+EIEI V Y+ + I T I ++ + ++E G VG+ L
Sbjct: 240 QGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDP 299
Query: 923 SVKREEVERGQVLAKIGSIKS-YNIFECEVYILSK 956
+ + ++ G V+ K G + ++ EV++L +
Sbjct: 300 YLTKGDLXAGNVVGKPGKLPPVWDSLRLEVHLLER 334
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQER-----GITITSA 64
NIG + HVD GKTT T+ + +H E+ G TI + R G TS
Sbjct: 12 NIGXVGHVDHGKTTLTKALTGVWTDTHS-EELRRGITIKIGFADAEIRRCPNCGRYSTSP 70
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQT 118
+F ++ ID PGH + DGA+++I A+ +PQT
Sbjct: 71 VCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANEPCPRPQT 125
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 147/315 (46%), Gaps = 48/315 (15%)
Query: 658 GHVDHGKTTL------------TAALTKVSSEIYGGEVRAFD---TIDNAPEEKERGITI 702
GHVD GK+T+ + ++ K+ +E +F +D EE+ RG+T+
Sbjct: 184 GHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTM 243
Query: 703 STSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMP-------QT 755
+ +ES+ K Y D PGH D+I MI GA+ D A+LV + QT
Sbjct: 244 DVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQT 303
Query: 756 REHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY-----DFDGENTKIV 810
REH L R +G+ IVV +NK D + E D + EI+ +++++ F N V
Sbjct: 304 REHAYLLRALGISEIVVSVNKLDLMSWSE--DRFQ-EIKNIVSDFLIKMVGFKTSNVHFV 360
Query: 811 IGSALLA--LEGKDDNQL-----GTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSI 863
SA+ L KD + L G T LL LD +P P + KP + I+DV+
Sbjct: 361 PISAISGTNLIQKDSSDLYKWYKGPT----LLSALDQLVP-PEKPYRKPLRLSIDDVYR- 414
Query: 864 SGRGTVVTGKIERGIVKNGEEIEIVGYKQT--IKTTITGIEMFKKTLDEGLAGENVGILL 921
S R VTG++E G V+ + + V ++ +K I + + +AG+ V + L
Sbjct: 415 SPRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSD---PSSTWAVAGDTVTLQL 471
Query: 922 RSVKREEVERGQVLA 936
++ ++ G +L+
Sbjct: 472 ADIEVNQLRPGDILS 486
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 17/112 (15%)
Query: 13 IIAHVDAGKTTTTERILFYSG--SSHKIGEVHH-------GTTITDWM----QQEQERGI 59
+ HVD+GK+T RI+F G +S + ++H+ G+ W+ ++E+ RG+
Sbjct: 182 VTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGV 241
Query: 60 TITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICAS 111
T+ AS + +E +K Y I D PGH DF + D AV+++ +S
Sbjct: 242 TMDVASTT--FESDKKIYEIG--DAPGHRDFISGMIAGASSADFAVLVVDSS 289
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 129/259 (49%), Gaps = 40/259 (15%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVE-YESEN 713
G +GHVDHGKTTL A+T + + + E++ TI E G+ S E Y +E
Sbjct: 12 GVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEP 71
Query: 714 --------------KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-PMPQTREH 758
+ + +D PGH + M++GAA MDGAILV +A + P PQTREH
Sbjct: 72 SCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREH 131
Query: 759 ILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLAL 818
+ +GV N+++ NK D V +E L +I++ T+ + EN I+ SAL +
Sbjct: 132 FVALGIIGVKNLIIVQNKVDVVSKEEALSQYR-QIKQ-FTKGTW-AENVPIIPVSALHKI 188
Query: 819 EGKDDNQLGTTSIKKLLDVLDSSIPTPNR-ITDKPFLMPIEDVFSISGRGT--------V 869
+I L++ ++ I TP R ++ KP ++ I F ++ GT V
Sbjct: 189 -----------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRS-FDVNKPGTQFNELKGGV 236
Query: 870 VTGKIERGIVKNGEEIEIV 888
+ G I +G+ K +EI+++
Sbjct: 237 IGGSIIQGLFKVDQEIKVL 255
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQ----------EQERGI 59
NIG++ HVD GKTT + I S H E+ G TI + + E +
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKHS-EELKRGMTIKLGYAETNIGVCESCKKPEAYV 68
Query: 60 TITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQT 118
T S + KF I+ ID PGH + ++DGA++++ A+ QPQT
Sbjct: 69 TEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT 128
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 129/259 (49%), Gaps = 40/259 (15%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVE-YESEN 713
G +GHVDHGKTTL A+T + + + E++ TI E G+ S E Y +E
Sbjct: 13 GVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEP 72
Query: 714 --------------KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-PMPQTREH 758
+ + +D PGH + M++GAA MDGAILV +A + P PQTREH
Sbjct: 73 SCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREH 132
Query: 759 ILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLAL 818
+ +GV N+++ NK D V +E L +I++ T+ + EN I+ SAL +
Sbjct: 133 FVALGIIGVKNLIIVQNKVDVVSKEEALSQYR-QIKQ-FTKGTW-AENVPIIPVSALHKI 189
Query: 819 EGKDDNQLGTTSIKKLLDVLDSSIPTPNR-ITDKPFLMPIEDVFSISGRGT--------V 869
+I L++ ++ I TP R ++ KP ++ I F ++ GT V
Sbjct: 190 -----------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRS-FDVNKPGTQFNELKGGV 237
Query: 870 VTGKIERGIVKNGEEIEIV 888
+ G I +G+ K +EI+++
Sbjct: 238 IGGSIIQGLFKVDQEIKVL 256
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQ----------EQERGI 59
NIG++ HVD GKTT + I S H E+ G TI + + E +
Sbjct: 11 NIGVVGHVDHGKTTLVQAITGIWTSKHS-EELKRGMTIKLGYAETNIGVCESCKKPEAYV 69
Query: 60 TITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQT 118
T S + KF I+ ID PGH + ++DGA++++ A+ QPQT
Sbjct: 70 TEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT 129
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 122/252 (48%), Gaps = 33/252 (13%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVR---------AFDTIDNAPEEKERGITISTS 705
G +GHVDHGKT+LT ALT V ++ + E+R A I P+
Sbjct: 12 GMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCP 71
Query: 706 HVEYESE-NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-PMPQTREHILLAR 763
+ E+E + + VD PGH + M++GA+ MDGAILV +A + P PQT+EH++
Sbjct: 72 NCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALE 131
Query: 764 QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDD 823
+G+ I++ NK D V +K+ + E +I+E + EN I+ SA
Sbjct: 132 ILGIDKIIIVQNKIDLVDEKQAEENYE-QIKEFV--KGTIAENAPIIPISAHHE------ 182
Query: 824 NQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGT--------VVTGKIE 875
+I LL + IPTP R D M + F I+ GT V+ G I
Sbjct: 183 -----ANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAII 237
Query: 876 RGIVKNGEEIEI 887
+G+ K G+EIEI
Sbjct: 238 QGVFKVGDEIEI 249
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 106/260 (40%), Gaps = 49/260 (18%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTI----TDW-MQQEQERGITITSA 64
NIG++ HVD GKT+ T+ + H E+ G +I D +++ + G T
Sbjct: 10 NIGMVGHVDHGKTSLTKALTGVWTDRHS-EELRRGISIRLGYADCEIRKCPQCGTYTTKP 68
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWF 123
+F ++ +D+PGH + ++DGA+++I A+ QPQT+
Sbjct: 69 RCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM 128
Query: 124 QSQKYKVPKMIFV-NKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIIN 182
+ + K+I V NK+D ++D K+ EENYE I + +
Sbjct: 129 ALEILGIDKIIIVQNKID---------LVDEKQA--------------EENYEQIKEFVK 165
Query: 183 KKSFFWKENSIII-------KNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSI 235
EN+ II NID + D+ + T + + Y+ ++ I
Sbjct: 166 GT---IAENAPIIPISAHHEANIDVLLKAIQDF-----IPTPKRDPDATPRMYVARSFDI 217
Query: 236 NDIKNSIRKL---VLKNKII 252
N I+ L VL II
Sbjct: 218 NKPGTEIKDLKGGVLGGAII 237
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 155/342 (45%), Gaps = 51/342 (14%)
Query: 657 IGHVDHGKTTLTAALT--------------KVSSEIYGGEVRAFDTI-DNAPEEKERGIT 701
+GHVD GK+TL L + SE G F I D EE+ERG+T
Sbjct: 39 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVT 98
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILV--CSA--------VDGP 751
+S + + ++ VD PGH D++ N I G +Q D AIL CS +DG
Sbjct: 99 VSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDG- 157
Query: 752 MPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENTKIV 810
QT+EH+LLA +G+ N+++ +NK D V ++ + ++ ++ L + F +N V
Sbjct: 158 --QTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWV 215
Query: 811 -----IGSALLALEGKDDNQLGTTSIKKLLDVLDSS---IPTPNR--ITDKPFLMPIEDV 860
G + +E D+ + L+ L+++ I N D PFL + ++
Sbjct: 216 PISGFSGEGVYKIEYTDEVRQWYNG-PNLMSTLENAAFKISKENEGINKDDPFLFSVLEI 274
Query: 861 F---SISGRGTVVTGKIERGIVKNGEEIEIVGYKQT--IKTTITGIEMFKKT----LDEG 911
S +V+GK+E G ++ GE + I +Q+ + G + + T D
Sbjct: 275 IPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVA 334
Query: 912 LAGENVGILLRSVKREEVERGQVLAKI--GSIKSYNIFECEV 951
+ G+ V + LR E+++ G + A + SI S F E+
Sbjct: 335 IKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLEL 376
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 30/182 (16%)
Query: 13 IIAHVDAGKTTTTERILF------------YSGSSHKIGEVHHG-TTITDWMQQEQERGI 59
++ HVDAGK+T R+L+ S +G+ I D +E+ERG+
Sbjct: 38 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 97
Query: 60 TITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIII-CASSGIQP-- 116
T+ S S F + + I+D PGH DF + D A++ + C+++ +
Sbjct: 98 TV-SICTSHF---STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGF 153
Query: 117 ----QTETVWFQSQKYKVPKMIF-VNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIE 171
QT+ + + +I +NKMD + + +IK K +LP +IG
Sbjct: 154 DLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR-FEEIKSK----LLPYLVDIGFF 208
Query: 172 EN 173
E+
Sbjct: 209 ED 210
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 86/146 (58%), Gaps = 8/146 (5%)
Query: 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGIT 60
MKN RN IIAH+D GK+T ++RI+ G + + + D M E+ERGIT
Sbjct: 1 MKN----IRNFSIIAHIDHGKSTLSDRIIQICGG---LSDREMEAQVLDSMDLERERGIT 53
Query: 61 ITSASVSIFWEVNKFK-YMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE 119
I + SV++ ++ + + Y +N IDTPGHVDF+ EV RSL +GA++++ A G++ QT
Sbjct: 54 IKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTL 113
Query: 120 TVWFQSQKYKVPKMIFVNKMDRIGAN 145
+ + + + + +NK+D A+
Sbjct: 114 ANCYTAMEMDLEVVPVLNKIDLPAAD 139
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 135/325 (41%), Gaps = 45/325 (13%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHV--EYES--- 711
I H+DHGK+TL+ + ++ + E+ A +D+ E+ERGITI V +Y++
Sbjct: 10 IAHIDHGKSTLSDRIIQICGGLSDREMEA-QVLDSMDLERERGITIKAQSVTLDYKASDG 68
Query: 712 ENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIV 771
E +D PGH D+ + A +GA+LV A G QT + A ++ + +V
Sbjct: 69 ETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDL-EVV 127
Query: 772 VFLNKADC-VQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTS 830
LNK D D E V EI +++ D G
Sbjct: 128 PVLNKIDLPAADPE---RVAEEIEDIVGIDATDAVRCSAKTG----------------VG 168
Query: 831 IKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGY 890
++ +L+ L IP P + P I D + + G V +I+ G ++ G++++++
Sbjct: 169 VQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMST 228
Query: 891 KQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKS-YNIFEC 949
QT GI K+ V R E++ G+V + +IK +
Sbjct: 229 GQTYNADRLGIFTPKQ-----------------VDRTELKCGEVGWLVCAIKDIHGAPVG 271
Query: 950 EVYILSKEEGGRHTPFFNGYKPQFY 974
+ L++ + P F KPQ Y
Sbjct: 272 DTLTLARNPAEKALPGFKKVKPQVY 296
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 28/191 (14%)
Query: 300 SLVFKIFHDPFLGSLSFIRIYSGFIKVGDLV--------YNSTKKVKEKIFRILRMFANS 351
+L+ + D +LG +S IRI +G ++ GD V YN+ + L +F
Sbjct: 193 ALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADR---------LGIFTPK 243
Query: 352 KKDINDAHFGDI-VVIVGLKE---SSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXF-- 405
+ D + G++ ++ +K+ + GDTL +L+ N + F
Sbjct: 244 QVDRTELKCGEVGWLVCAIKDIHGAPVGDTL-TLARNPAEKALPGFKKVKPQVYAGLFPV 302
Query: 406 -KNDQEKLLNILQKFCKEDPSLLLSINNNT--GETILSG-MGELHLEIIVDRILKENNIK 461
+D E + L K D SL +++ G G +G LH+EII +R+ +E ++
Sbjct: 303 SSDDYEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLD 362
Query: 462 TKISKPQVSYK 472
+ P V Y+
Sbjct: 363 LITTAPTVVYE 373
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRE-LFGYSTDLRS 651
EPI + + LP +LG V+ +KRG+ ++ H N + IP+ E + + L+S
Sbjct: 401 EPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEVVLDFFDRLKS 460
Query: 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERG 699
++G + K + + +V I G V A I + + RG
Sbjct: 461 TSRGYASLDYNFKRFQASDMVRVDVLINGERVDALALITHRDNSQNRG 508
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 86/146 (58%), Gaps = 8/146 (5%)
Query: 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGIT 60
MKN RN IIAH+D GK+T ++RI+ G + + + D M E+ERGIT
Sbjct: 1 MKN----IRNFSIIAHIDHGKSTLSDRIIQICGG---LSDREMEAQVLDSMDLERERGIT 53
Query: 61 ITSASVSIFWEVNKFK-YMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE 119
I + SV++ ++ + + Y +N IDTPGHVDF+ EV RSL +GA++++ A G++ QT
Sbjct: 54 IKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTL 113
Query: 120 TVWFQSQKYKVPKMIFVNKMDRIGAN 145
+ + + + + +NK+D A+
Sbjct: 114 ANCYTAMEMDLEVVPVLNKIDLPAAD 139
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHV--EYES--- 711
I H+DHGK+TL+ + ++ + E+ A +D+ E+ERGITI V +Y++
Sbjct: 10 IAHIDHGKSTLSDRIIQICGGLSDREMEA-QVLDSMDLERERGITIKAQSVTLDYKASDG 68
Query: 712 ENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIV 771
E +D PGH D+ + A +GA+LV A G QT + A ++ + +V
Sbjct: 69 ETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDL-EVV 127
Query: 772 VFLNKAD 778
LNK D
Sbjct: 128 PVLNKID 134
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 28/191 (14%)
Query: 300 SLVFKIFHDPFLGSLSFIRIYSGFIKVGDLV--------YNSTKKVKEKIFRILRMFANS 351
+L+ + D +LG +S IRI +G ++ GD V YN+ + L +F
Sbjct: 193 ALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADR---------LGIFTPK 243
Query: 352 KKDINDAHFGDI-VVIVGLKE---SSTGDTLCSLSENIQLENXXXXXXXXXXXXXXXF-- 405
+ D + G++ ++ +K+ + GDTL +L+ N + F
Sbjct: 244 QVDRTELKCGEVGWLVCAIKDIHGAPVGDTL-TLARNPAEKALPGFKKVKPQVYAGLFPV 302
Query: 406 -KNDQEKLLNILQKFCKEDPSLLLSINNNT--GETILSG-MGELHLEIIVDRILKENNIK 461
+D E + L K D SL +++ G G +G LH+EII +R+ +E ++
Sbjct: 303 SSDDYEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLD 362
Query: 462 TKISKPQVSYK 472
+ P V Y+
Sbjct: 363 LITTAPTVVYE 373
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRE-LFGYSTDLRS 651
EPI + + LP +LG V+ +KRG+ ++ H N + IP+ E + + L+S
Sbjct: 401 EPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEVVLDFFDRLKS 460
Query: 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERG 699
++G + K + + +V I G V A I + + RG
Sbjct: 461 TSRGYASLDYNFKRFQASDMVRVDVLINGERVDALALITHRDNSQNRG 508
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 155/342 (45%), Gaps = 51/342 (14%)
Query: 657 IGHVDHGKTTLTAALT--------------KVSSEIYGGEVRAFDTI-DNAPEEKERGIT 701
+GHVD GK+TL L + SE G F I D EE+ERG+T
Sbjct: 173 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVT 232
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILV--CSA--------VDGP 751
+S + + ++ VD PGH D++ N I G +Q D AIL CS +DG
Sbjct: 233 VSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDG- 291
Query: 752 MPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENTKIV 810
QT+EH+LLA +G+ N+++ +NK D V ++ + ++ ++ L + F +N V
Sbjct: 292 --QTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWV 349
Query: 811 -----IGSALLALEGKDDNQLGTTSIKKLLDVLDSS---IPTPNR--ITDKPFLMPIEDV 860
G + +E D+ + L+ L+++ I N D PFL + ++
Sbjct: 350 PISGFSGEGVYKIEYTDEVRQWYNG-PNLMSTLENAAFKISKENEGINKDDPFLFSVLEI 408
Query: 861 F---SISGRGTVVTGKIERGIVKNGEEIEIVGYKQT--IKTTITGIEMFKKT----LDEG 911
S +V+GK+E G ++ GE + I +Q+ + G + + T D
Sbjct: 409 IPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVA 468
Query: 912 LAGENVGILLRSVKREEVERGQVLAKI--GSIKSYNIFECEV 951
+ G+ V + LR E+++ G + A + SI S F E+
Sbjct: 469 IKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLEL 510
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 30/182 (16%)
Query: 13 IIAHVDAGKTTTTERILF------------YSGSSHKIGEVHHG-TTITDWMQQEQERGI 59
++ HVDAGK+T R+L+ S +G+ I D +E+ERG+
Sbjct: 172 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 231
Query: 60 TITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIII-CASSGIQP-- 116
T+ S S F + + I+D PGH DF + D A++ + C+++ +
Sbjct: 232 TV-SICTSHF---STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGF 287
Query: 117 ----QTETVWFQSQKYKVPKMIF-VNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIE 171
QT+ + + +I +NKMD + + +IK K +LP +IG
Sbjct: 288 DLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR-FEEIKSK----LLPYLVDIGFF 342
Query: 172 EN 173
E+
Sbjct: 343 ED 344
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 150/341 (43%), Gaps = 49/341 (14%)
Query: 657 IGHVDHGKTTLTAALT--------------KVSSEIYGGEVRAFDTI-DNAPEEKERGIT 701
+GHVD GK+TL L + SE G F I D EE+ERG+T
Sbjct: 39 LGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNEERERGVT 98
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILV--CSA--------VDGP 751
+S + + ++ VD PGH D++ N I G +Q D AIL CS +DG
Sbjct: 99 VSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDCSTNAFESGFDLDG- 157
Query: 752 MPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENTKIV 810
QT+EH LLA +G+ N+++ NK D V ++ + ++ ++ L + F +N V
Sbjct: 158 --QTKEHXLLASSLGIHNLIIAXNKXDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWV 215
Query: 811 I-----GSALLALEGKDD--NQLGTTSIKKLLDVLDSSIPTPNR--ITDKPFLMPIEDVF 861
G + +E D+ ++ L+ I N D PFL + ++
Sbjct: 216 PISGFSGEGVYKIEYTDEVRQWYNGPNLXSTLENAAFKISKENEGINKDDPFLFSVLEII 275
Query: 862 ---SISGRGTVVTGKIERGIVKNGEEIEIVGYKQT--IKTTITGIEMFKKT----LDEGL 912
S +V+GK+E G ++ GE + I +Q+ + G + + T D +
Sbjct: 276 PSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAI 335
Query: 913 AGENVGILLRSVKREEVERGQVLAKI--GSIKSYNIFECEV 951
G+ V + LR E+++ G + A + SI S F E+
Sbjct: 336 KGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLEL 376
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 13 IIAHVDAGKTTTTERILF------------YSGSSHKIGEVHHG-TTITDWMQQEQERGI 59
++ HVDAGK+T R+L+ S G+ I D +E+ERG+
Sbjct: 38 VLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNEERERGV 97
Query: 60 TITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIII-CASSGIQ 115
T+ S S F + + I+D PGH DF + D A++ + C+++ +
Sbjct: 98 TV-SICTSHF---STHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDCSTNAFE 150
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 29/248 (11%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGIT-ISTSHVEYESEN 713
G +GHVDHGKTTL A+T + + G + + ++ E +T S + E
Sbjct: 12 GVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEP 71
Query: 714 K---HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-PMPQTREHILLARQVGVPN 769
K + +D PGH + M++GAA MDGAILV +A + P PQTREH + +GV N
Sbjct: 72 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKN 131
Query: 770 IVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTT 829
+++ NK D V +E L +I++ T+ + EN I+ SAL +
Sbjct: 132 LIIVQNKVDVVSKEEALSQYR-QIKQ-FTKGTW-AENVPIIPVSALHKI----------- 177
Query: 830 SIKKLLDVLDSSIPTPNR-ITDKPFLMPIEDVFSISGRGT--------VVTGKIERGIVK 880
+I L++ ++ I TP R ++ KP ++ I F ++ GT V+ G I +G+ K
Sbjct: 178 NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRS-FDVNKPGTQFNELKGGVIGGSIIQGLFK 236
Query: 881 NGEEIEIV 888
+EI+++
Sbjct: 237 VDQEIKVL 244
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
NIG++ HVD GKTT + I +S K+G + + ++ E +T S
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGI-WTSKKLGYAETNIGVCE-SCKKPEAYVTEPSCKSCGS 67
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQT 118
+ KF I+ ID PGH + ++DGA++++ A+ QPQT
Sbjct: 68 DDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT 117
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 127/259 (49%), Gaps = 45/259 (17%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVE-YESEN 713
G +GHVDHGKTTL A+T + + + E TI E G+ S E Y +E
Sbjct: 12 GVVGHVDHGKTTLVQAITGIWTSKHSEE-----TIKLGYAETNIGVCESCKKPEAYVTEP 66
Query: 714 --------------KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-PMPQTREH 758
+ + +D PGH + M++GAA MDGAILV +A + P PQTREH
Sbjct: 67 SCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREH 126
Query: 759 ILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLAL 818
+ +GV N+++ NK D V +E L +I++ T+ + EN I+ SAL +
Sbjct: 127 FVALGIIGVKNLIIVQNKVDVVSKEEALSQYR-QIKQ-FTKGTW-AENVPIIPVSALHKI 183
Query: 819 EGKDDNQLGTTSIKKLLDVLDSSIPTPNR-ITDKPFLMPIEDVFSISGRGT--------V 869
+I L++ ++ I TP R ++ KP ++ I F ++ GT V
Sbjct: 184 -----------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRS-FDVNKPGTQFNELKGGV 231
Query: 870 VTGKIERGIVKNGEEIEIV 888
+ G I +G+ K +EI+++
Sbjct: 232 IGGSIIQGLFKVDQEIKVL 250
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSH-----KIGEVHHGTTITDWMQQEQERGITITSA 64
NIG++ HVD GKTT + I S H K+G + + ++ E +T S
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCE-SCKKPEAYVTEPSC 68
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQT 118
+ KF I+ ID PGH + ++DGA++++ A+ QPQT
Sbjct: 69 KSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT 123
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 99/396 (25%), Positives = 174/396 (43%), Gaps = 58/396 (14%)
Query: 656 TIGHVDHGKTTLTAALTKVSSEIY-----------------GGEVRAFDTIDNAPEEKER 698
T G+VD GK+TL L S IY G +V +D E+E+
Sbjct: 29 TCGNVDDGKSTLIGRLLHDSKXIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQ 88
Query: 699 GITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREH 758
GITI ++ + + + + D PGH Y +N TGA+ D AI++ A G QTR H
Sbjct: 89 GITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDARYGVQTQTRRH 148
Query: 759 ILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLA 817
+A +G+ +IVV +NK D D+ + + ++ + + F V SAL
Sbjct: 149 SYIASLLGIKHIVVAINKXDLNGFDERVFESIKADYLKFAEGIAFKPTTXAFVPXSAL-- 206
Query: 818 LEGKDDNQLGTT------SIKKLLDVLDS-SIPTPNRITDKPFLMPIEDVFSISGRGTVV 870
K DN + + + + L ++L++ I + TD F + + +++ RG
Sbjct: 207 ---KGDNVVNKSERSPWYAGQSLXEILETVEIASDRNYTDLRFPVQYVNRPNLNFRG--F 261
Query: 871 TGKIERGIVKNGEEIEIV--GYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREE 928
G + GIV G+EI ++ G +K+ +T F+ L++ AG + L +
Sbjct: 262 AGTLASGIVHKGDEIVVLPSGKSSRVKSIVT----FEGELEQ--AGPGQAVTLTXEDEID 315
Query: 929 VERGQVLAKIGSI-KSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTG-ICKL 986
+ RG +L ++ + + F+ + ++E P G K T+ V G I +
Sbjct: 316 ISRGDLLVHADNVPQVSDAFDAXLVWXAEE------PXLPGKKYDIKRATSYVPGSIASI 369
Query: 987 PENVEMVL----PGDNIKLN------VTLLSSIAIE 1012
V++ P +++LN V+L + IA++
Sbjct: 370 THRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIALD 405
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 28/135 (20%)
Query: 2 KNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH----------HGTT----- 46
+ + L F G +VD GK+T R+L S I E H GTT
Sbjct: 21 RKEXLRFLTCG---NVDDGKSTLIGRLLH---DSKXIYEDHLEAITRDSKKSGTTGDDVD 74
Query: 47 ---ITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDG 103
+ D +Q E+E+GITI A ++ K K++I DTPGH +T D
Sbjct: 75 LALLVDGLQAEREQGITIDVAYR--YFSTAKRKFII--ADTPGHEQYTRNXATGASTCDL 130
Query: 104 AVIIICASSGIQPQT 118
A+I++ A G+Q QT
Sbjct: 131 AIILVDARYGVQTQT 145
>pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
Length = 68
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 44/60 (73%)
Query: 596 MKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKG 655
M+VEV P E++G V+GD+N +RG I + N ++I +++PL E+FGY+TDLRS T+G
Sbjct: 1 MRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQG 60
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/124 (36%), Positives = 59/124 (47%), Gaps = 21/124 (16%)
Query: 657 IGHVDHGKTTLTAAL--TKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
+GHVDHGKTTL A+ +KV+ E++ GIT + +K
Sbjct: 14 MGHVDHGKTTLLDAIRHSKVT------------------EQEAGGITQHIGAYQVTVNDK 55
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
+D PGH + GA D ILV +A DG MPQT E I A+ VP I+V +
Sbjct: 56 KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAI 114
Query: 775 NKAD 778
NK D
Sbjct: 115 NKMD 118
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 38 IGEVHHG-TTITDWMQQ----EQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTI 92
+G V HG TT+ D ++ EQE G IT + VN K I +DTPGH FT
Sbjct: 14 MGHVDHGKTTLLDAIRHSKVTEQEAG-GITQHIGAYQVTVNDKK--ITFLDTPGHEAFTT 70
Query: 93 EVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGAN 145
R +V D ++++ A G+ PQT ++ VP ++ +NKMD+ AN
Sbjct: 71 MRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN 123
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 103/237 (43%), Gaps = 35/237 (14%)
Query: 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGIT--ISTSHV 707
RS +GHVDHGKTTL L K +V A + GIT I V
Sbjct: 3 RSPVVTIMGHVDHGKTTLLDKLRKT-------QVAAMEA---------GGITQHIGAFLV 46
Query: 708 EYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGV 767
S K +D PGHA + G D ILV +A DG M QT E I A+ V
Sbjct: 47 SLPSGEK-ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHV 105
Query: 768 PNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGEN-TKIVIGSALLALEGKDDNQ 825
P IV+ +NK D + D E ++++ L YD E+ V + AL G++
Sbjct: 106 P-IVLAINKCDKAEADPE-------KVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157
Query: 826 LGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNG 882
L +I L ++L+ P + + + F+ GRG V T I+RG ++ G
Sbjct: 158 LAEATI-ALAEMLELK-ADPTGAVEGTVI----ESFTDKGRGPVTTAIIQRGTLRKG 208
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 38 IGEVHHG-TTITDWMQQEQERGITI--TSASVSIFWEVNKFKYMINIIDTPGHVDFTIEV 94
+G V HG TT+ D +++ Q + + + F I +DTPGH F+
Sbjct: 10 MGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMR 69
Query: 95 ERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGAN 145
R +V D ++++ A G+ QT ++ VP ++ +NK D+ A+
Sbjct: 70 ARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEAD 120
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 48/105 (45%), Gaps = 20/105 (19%)
Query: 657 IGHVDHGKTTLTAAL--TKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
+GHVDHGKT+L + TKV+S GG IT E+EN
Sbjct: 10 MGHVDHGKTSLLEYIRSTKVASGEAGG------------------ITQHIGAYHVETENG 51
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHI 759
+D PGHA + GA D +LV +A DG MPQT E I
Sbjct: 52 MITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI 96
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 22/108 (20%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFW 70
+ I+ HVD GKT+ E I +S + G GIT + +
Sbjct: 7 VTIMGHVDHGKTSLLEYIRSTKVASGEAG------------------GITQHIGA----Y 44
Query: 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
V MI +DTPGH FT R + D V+++ A G+ PQT
Sbjct: 45 HVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQT 92
>pdb|2ELF|A Chain A, Crystal Structure Of The Selb-Like Elongation Factor
Ef-Pyl From Methanosarcina Mazei
Length = 370
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 126/267 (47%), Gaps = 20/267 (7%)
Query: 697 ERGITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTR 756
++G + + + E ++ VD + +K++IT D A+L C G T
Sbjct: 43 KKGTSSDITXYNNDKEGRNXVFVDAHSYPKTLKSLITALNISDIAVL-CIPPQGLDAHTG 101
Query: 757 EHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIR-----ELLTEYDFDGENTKIVI 811
E I+ +G + ++ L ++D +D ++ +++ +L +++ NT
Sbjct: 102 ECIIALDLLGFKHGIIALTRSDSTH-XHAIDELKAKLKVITSGTVLQDWECISLNTN--- 157
Query: 812 GSALLALEGKDDNQLGTTSIKKLLDVLDSSIPT-PNRITDKPFLMPIEDVFSISGRGTVV 870
SA EG D+ + + + ++ ++ + + P RI I+ F+++G+G VV
Sbjct: 158 KSAKNPFEGVDELKARINEVAEKIEAENAELNSLPARIF-------IDHAFNVTGKGCVV 210
Query: 871 TGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVE 930
G +++GI K+ ++ +I + I+ I I+ +D AG VG L++V+ +++E
Sbjct: 211 LGVVKQGISKDKDKTKIFPLDRDIE--IRSIQSHDVDIDSAPAGTRVGXRLKNVQAKDIE 268
Query: 931 RGQVLAKIGSIKSYNIFECEVYILSKE 957
RG +++ + + EC V +K+
Sbjct: 269 RGFIISDKEIVTTDYTLECTVSKFTKK 295
>pdb|3DWU|A Chain A, Transition-State Model Conformation Of The Switch I Region
Fitted Into The Cryo-Em Map Of The Eef2.80s.Alf4.Gdp
Complex
Length = 46
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 660 VDHGKTTLTAALTKVSS-EIYGGEVRAFDTIDNAPEEKERGITIST 704
VDHGKTTLTAALT V++ E EV+ + ID APEE+ RGITI+T
Sbjct: 1 VDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINT 46
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 18/139 (12%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEV--HHGTT-----ITDWMQQEQERGITITS 63
+ ++ HVD GKTT + I + +S + G + H G T + + + + + +I
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPXDVIEGICGDFLKKFSIRE 67
Query: 64 ASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF 123
+F+ IDTPGH FT +R + D A++I+ + G +PQT+
Sbjct: 68 TLPGLFF-----------IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN 116
Query: 124 QSQKYKVPKMIFVNKMDRI 142
+ Y+ P ++ NK+DRI
Sbjct: 117 ILRXYRTPFVVAANKIDRI 135
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 57/136 (41%), Gaps = 5/136 (3%)
Query: 649 LRSNTKGTIGHVDHGKTTLTAAL--TKVSSEIYGGEVRAFDTIDNAPEEKERGITIS-TS 705
+RS +GHVDHGKTTL + + V+S GG + + P + GI
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATE-IPXDVIEGICGDFLK 61
Query: 706 HVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQV 765
+D PGH + G A D AIL+ +G PQT+E + + R
Sbjct: 62 KFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXY 121
Query: 766 GVPNIVVFLNKADCVQ 781
P VV NK D +
Sbjct: 122 RTP-FVVAANKIDRIH 136
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 18/139 (12%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEV--HHGTT-----ITDWMQQEQERGITITS 63
+ ++ HVD GKTT + I + +S + G + H G T + + + + + +I
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67
Query: 64 ASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF 123
+F+ IDTPGH FT +R + D A++I+ + G +PQT+
Sbjct: 68 TLPGLFF-----------IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN 116
Query: 124 QSQKYKVPKMIFVNKMDRI 142
+ Y+ P ++ NK+DRI
Sbjct: 117 ILRMYRTPFVVAANKIDRI 135
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 57/136 (41%), Gaps = 5/136 (3%)
Query: 649 LRSNTKGTIGHVDHGKTTLTAAL--TKVSSEIYGGEVRAFDTIDNAPEEKERGITIS-TS 705
+RS +GHVDHGKTTL + + V+S GG + + P + GI
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATE-IPMDVIEGICGDFLK 61
Query: 706 HVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQV 765
+D PGH + G A D AIL+ +G PQT+E + + R
Sbjct: 62 KFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY 121
Query: 766 GVPNIVVFLNKADCVQ 781
P VV NK D +
Sbjct: 122 RTP-FVVAANKIDRIH 136
>pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
pdb|2HDN|A Chain A, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|C Chain C, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|E Chain E, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|G Chain G, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|I Chain I, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|K Chain K, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 37
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/30 (73%), Positives = 25/30 (83%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVR 684
GTIGHVDHGKTTLTAA+T V ++ YGG R
Sbjct: 8 GTIGHVDHGKTTLTAAITTVLAKTYGGAAR 37
>pdb|2P8W|S Chain S, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|2P8X|S Chain S, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Z|S Chain S, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
Length = 35
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 682 EVRAFDTIDNAPEEKERGITISTSHVE 708
EV+ + ID APEE+ RGITI+T+HVE
Sbjct: 9 EVKDYGDIDKAPEERARGITINTAHVE 35
>pdb|4AG6|A Chain A, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG6|B Chain B, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG6|C Chain C, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG6|D Chain D, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
Length = 392
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 464 ISKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEI 519
I P+ YKE +K+ G +I +GG+G+ + +R+ P+ E++EN +F+S +
Sbjct: 68 IIDPEREYKEXCRKL---GGVWINCTGGEGKINPLQVRLRPVEEEDEENAVFQSPL 120
>pdb|4AG5|A Chain A, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG5|B Chain B, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG5|C Chain C, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG5|D Chain D, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
Length = 392
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 464 ISKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEI 519
I P+ YKE +K+ G +I +GG+G+ + +R+ P+ E++EN +F+S +
Sbjct: 68 IIDPEREYKEMCRKL---GGVWINCTGGEGKINPLQVRLRPVEEEDEENAVFQSPL 120
>pdb|3E1Y|E Chain E, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|F Chain F, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|G Chain G, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|H Chain H, Crystal Structure Of Human Erf1ERF3 COMPLEX
Length = 204
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 852 PFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEG 911
P +PI D + GTVV GK+E G + G+++ ++ K ++ + GI D
Sbjct: 6 PIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVE--VLGILSDDVETDTV 61
Query: 912 LAGENVGILLRSVKREEVERGQVLAKIGSI-KSYNIFECEVYIL 954
GEN+ I L+ ++ EE+ G +L ++ S F+ ++ I+
Sbjct: 62 APGENLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDAQIVII 105
>pdb|1GGP|A Chain A, Crystal Structure Of Trichosanthes Kirilowii Lectin-1 And
Its Relation To The Type 2 Ribosome Inactivating
Proteins
Length = 234
Score = 33.5 bits (75), Expect = 0.63, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 645 YSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITIST 704
Y+ D++ G + HG L A E RA+ T+D+A ++E + +
Sbjct: 6 YNADIKEERDAAEGPMAHGIPALNAGALD--------EARAYATVDSANTDEEVSVAVDV 57
Query: 705 SH---VEYESENKHYAHVDCPGHA 725
++ V Y + + Y H PG +
Sbjct: 58 TNLAVVAYRAGSNSYFHAAAPGSS 81
>pdb|3E20|A Chain A, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|D Chain D, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|E Chain E, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|J Chain J, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 201
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 852 PFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEG 911
PF+MPI + GT++ GKIE G +K + ++ QT++ T E + +
Sbjct: 7 PFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEA-DEEISSS 63
Query: 912 LAGENVGILLRSVKREEVERGQVL 935
+ G+ V + +R +V+ G VL
Sbjct: 64 ICGDQVRLRVRG-DDSDVQTGYVL 86
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 21/138 (15%)
Query: 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVE 708
++S IG+ + GK+T+ ALT +Y I N P G+T+ E
Sbjct: 1 MKSYEIALIGNPNVGKSTIFNALT--GENVY---------IGNWP-----GVTVEKKEGE 44
Query: 709 YESENKHYAHVDCPGHADYIKNMITGAAQMDGAI-----LVCSAVDGPMPQTREHILLAR 763
+E + + VD PG N I D I LV + VD + ++ L
Sbjct: 45 FEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQL 104
Query: 764 QVGVPNIVVFLNKADCVQ 781
N+++ LNK D +
Sbjct: 105 MEMGANLLLALNKMDLAK 122
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 21/138 (15%)
Query: 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVE 708
++S IG+ + GK+T+ ALT +Y I N P G+T+ E
Sbjct: 1 MKSYEIALIGNPNVGKSTIFNALT--GENVY---------IGNWP-----GVTVEKKEGE 44
Query: 709 YESENKHYAHVDCPGHADYIKNMITGAAQMDGAI-----LVCSAVDGPMPQTREHILLAR 763
+E + + VD PG N I D I LV + VD + ++ L
Sbjct: 45 FEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQL 104
Query: 764 QVGVPNIVVFLNKADCVQ 781
N+++ LNK D +
Sbjct: 105 MEMGANLLLALNKMDLAK 122
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 21/130 (16%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHY 716
IG+ + GK+T+ ALT +Y I N P G+T+ E+E + +
Sbjct: 10 IGNPNVGKSTIFNALT--GENVY---------IGNWP-----GVTVEKKEGEFEYNGEKF 53
Query: 717 AHVDCPGHADYIKNMITGAAQMDGAI-----LVCSAVDGPMPQTREHILLARQVGVPNIV 771
VD PG N I D I LV + VD + ++ L N++
Sbjct: 54 KVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLXEXGANLL 113
Query: 772 VFLNKADCVQ 781
+ LNK D +
Sbjct: 114 LALNKXDLAK 123
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 21/140 (15%)
Query: 647 TDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSH 706
+ ++S IG+ + GK+T+ ALT +Y I N P G+T+
Sbjct: 3 SHMKSYEIALIGNPNVGKSTIFNALT--GENVY---------IGNWP-----GVTVEKKE 46
Query: 707 VEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAI-----LVCSAVDGPMPQTREHILL 761
E+E + + VD PG N I D I LV + VD + ++ L
Sbjct: 47 GEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTL 106
Query: 762 ARQVGVPNIVVFLNKADCVQ 781
N+++ LNK D +
Sbjct: 107 QLMEMGANLLLALNKMDLAK 126
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES 711
T +G+ + GKTT+ ALT + + N P G+T+ E
Sbjct: 4 KTVALVGNPNVGKTTIFNALTGLRQH-----------VGNWP-----GVTVEKKEGIMEY 47
Query: 712 ENKHYAHVDCPG----HADYIKNMITGAAQMDG-AILVCSAVDGPMPQTREHILLAR-QV 765
K + VD PG A I +I +DG A ++ VD + L ++
Sbjct: 48 REKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEM 107
Query: 766 GVPNIVVFLNKADCVQDK 783
V NI++ LNK D ++ K
Sbjct: 108 EVKNIILVLNKFDLLKKK 125
>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
Length = 181
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 652 NTKGTIGHVDHGKTTLTAALTKVSS-EIYGGEVRAFDT-IDNAPEEKERGITISTSHVEY 709
N+ +I HV +G +A+T E++GG++R+F T I P+ + Y
Sbjct: 34 NSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMRSFFTLIMTDPD-------VPGPSDPY 86
Query: 710 ESENKHYAHVDCPGHAD 726
E+ H+ D PG D
Sbjct: 87 LREHLHWIVTDIPGTTD 103
>pdb|3E3X|A Chain A, The C-Terminal Part Of Bipa Protein From Vibrio
Parahaemolyticus Rimd 2210633
Length = 332
Score = 30.0 bits (66), Expect = 7.6, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 414 NILQKFCKE---DPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVS 470
NIL++ KE + +L + ++ + +SG GELHL I+++ +E + +S+P+V
Sbjct: 57 NILERLEKELVHNVALRVEQTDDPDKFRVSGRGELHLSILIENXRRE-GFELAVSRPEVI 115
Query: 471 YKE 473
E
Sbjct: 116 IXE 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,656,818
Number of Sequences: 62578
Number of extensions: 1292386
Number of successful extensions: 4407
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3817
Number of HSP's gapped (non-prelim): 226
length of query: 1021
length of database: 14,973,337
effective HSP length: 109
effective length of query: 912
effective length of database: 8,152,335
effective search space: 7434929520
effective search space used: 7434929520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)