Query psy5021
Match_columns 1021
No_of_seqs 654 out of 5586
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 23:48:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0465|consensus 100.0 2E-137 4E-142 1128.7 49.0 653 4-662 35-702 (721)
2 COG0480 FusA Translation elong 100.0 2E-133 5E-138 1179.3 72.4 653 4-662 6-672 (697)
3 PRK00007 elongation factor G; 100.0 9E-122 2E-126 1116.2 76.0 656 1-662 2-672 (693)
4 PRK12739 elongation factor G; 100.0 1E-120 2E-125 1108.7 74.5 653 4-662 4-669 (691)
5 TIGR00484 EF-G translation elo 100.0 2E-119 4E-124 1099.2 76.4 655 1-662 2-669 (689)
6 PRK13351 elongation factor G; 100.0 7E-117 2E-121 1080.1 77.0 653 4-662 4-669 (687)
7 PRK12740 elongation factor G; 100.0 1E-110 3E-115 1024.5 74.4 643 14-662 1-651 (668)
8 PLN00116 translation elongatio 100.0 4E-108 9E-113 1011.3 60.5 644 4-662 15-798 (843)
9 PTZ00416 elongation factor 2; 100.0 3E-107 7E-112 1001.3 58.7 638 4-662 15-791 (836)
10 TIGR00490 aEF-2 translation el 100.0 4E-103 8E-108 955.5 58.0 605 4-661 15-691 (720)
11 KOG0464|consensus 100.0 5E-106 1E-110 838.3 26.1 648 4-660 33-728 (753)
12 PRK07560 elongation factor EF- 100.0 4E-102 8E-107 949.7 55.6 610 4-662 16-694 (731)
13 KOG0469|consensus 100.0 4.9E-95 1.1E-99 771.7 26.6 641 4-662 15-797 (842)
14 PRK00741 prfC peptide chain re 100.0 4.9E-78 1.1E-82 703.0 48.6 449 4-477 6-473 (526)
15 KOG0468|consensus 100.0 1.1E-78 2.4E-83 666.2 40.2 642 4-659 124-896 (971)
16 PRK05433 GTP-binding protein L 100.0 3.5E-77 7.5E-82 707.6 50.0 460 4-663 3-475 (600)
17 TIGR01394 TypA_BipA GTP-bindin 100.0 1.6E-76 3.5E-81 698.5 49.2 441 8-662 1-464 (594)
18 TIGR01393 lepA GTP-binding pro 100.0 6E-76 1.3E-80 696.3 51.7 457 6-662 1-471 (595)
19 PRK10218 GTP-binding protein; 100.0 4.3E-75 9.4E-80 684.1 50.0 444 5-662 2-468 (607)
20 TIGR00503 prfC peptide chain r 100.0 3.5E-74 7.5E-79 670.8 49.4 444 4-473 7-470 (527)
21 KOG0467|consensus 100.0 1.6E-74 3.6E-79 646.8 29.0 634 4-659 5-818 (887)
22 COG0481 LepA Membrane GTPase L 100.0 7.7E-72 1.7E-76 596.2 37.1 459 4-662 5-477 (603)
23 KOG0462|consensus 100.0 3.2E-71 6.9E-76 601.7 34.3 459 4-661 56-526 (650)
24 COG1217 TypA Predicted membran 100.0 2.6E-66 5.7E-71 551.9 40.3 438 6-657 3-463 (603)
25 COG5256 TEF1 Translation elong 100.0 3E-65 6.6E-70 545.6 35.7 364 650-1021 6-413 (428)
26 COG4108 PrfC Peptide chain rel 100.0 2.2E-65 4.7E-70 543.1 32.0 439 4-472 8-470 (528)
27 KOG0460|consensus 100.0 5.3E-65 1.1E-69 522.1 24.7 376 645-1021 48-423 (449)
28 COG0050 TufB GTPases - transla 100.0 1.2E-63 2.6E-68 502.8 29.9 369 650-1021 11-379 (394)
29 PLN03127 Elongation factor Tu; 100.0 8.8E-60 1.9E-64 540.8 41.2 376 645-1021 55-432 (447)
30 PRK12735 elongation factor Tu; 100.0 1.6E-59 3.4E-64 536.5 42.5 375 645-1021 6-381 (396)
31 PRK12736 elongation factor Tu; 100.0 2.9E-59 6.2E-64 534.0 42.5 371 647-1021 8-379 (394)
32 PRK00049 elongation factor Tu; 100.0 3.8E-59 8.3E-64 532.7 43.4 375 645-1021 6-381 (396)
33 TIGR00485 EF-Tu translation el 100.0 8.3E-59 1.8E-63 531.5 42.8 371 647-1021 8-379 (394)
34 PLN03126 Elongation factor Tu; 100.0 9.7E-59 2.1E-63 533.9 42.1 374 648-1021 78-463 (478)
35 PLN00043 elongation factor 1-a 100.0 2.9E-58 6.3E-63 529.1 40.2 364 650-1021 6-416 (447)
36 CHL00071 tufA elongation facto 100.0 1.4E-57 3.1E-62 522.6 42.3 375 647-1021 8-394 (409)
37 PTZ00141 elongation factor 1- 100.0 9.5E-58 2.1E-62 525.6 40.3 366 648-1021 4-416 (446)
38 PRK12317 elongation factor 1-a 100.0 1.3E-55 2.8E-60 511.9 38.2 365 649-1021 4-407 (425)
39 TIGR00483 EF-1_alpha translati 100.0 7.7E-55 1.7E-59 505.0 39.5 366 648-1021 4-409 (426)
40 KOG0458|consensus 100.0 2.1E-53 4.5E-58 469.5 29.0 364 650-1021 176-588 (603)
41 COG5258 GTPBP1 GTPase [General 100.0 2.2E-51 4.8E-56 427.7 34.7 350 650-1021 116-514 (527)
42 TIGR02034 CysN sulfate adenyly 100.0 5.4E-51 1.2E-55 467.2 38.2 355 653-1020 2-393 (406)
43 PRK05124 cysN sulfate adenylyl 100.0 7.1E-51 1.5E-55 472.1 39.0 360 649-1020 25-421 (474)
44 PTZ00327 eukaryotic translatio 100.0 1.2E-50 2.6E-55 463.0 37.1 337 650-1021 33-435 (460)
45 COG2895 CysN GTPases - Sulfate 100.0 6.7E-50 1.4E-54 414.5 29.3 357 648-1020 6-399 (431)
46 cd01886 EF-G Elongation factor 100.0 1.4E-49 2.9E-54 428.6 31.1 266 10-279 1-270 (270)
47 KOG0459|consensus 100.0 5.6E-50 1.2E-54 420.6 25.1 361 651-1021 79-486 (501)
48 PRK05506 bifunctional sulfate 100.0 1.6E-48 3.4E-53 472.2 39.0 358 651-1021 24-418 (632)
49 PRK10512 selenocysteinyl-tRNA- 100.0 2.4E-48 5.3E-53 461.7 36.5 323 652-1021 1-325 (614)
50 TIGR03680 eif2g_arch translati 100.0 1.5E-46 3.3E-51 431.0 38.1 334 650-1019 3-389 (406)
51 PRK04000 translation initiatio 100.0 1.8E-46 3.9E-51 429.5 38.1 338 646-1019 4-394 (411)
52 COG3276 SelB Selenocysteine-sp 100.0 2.1E-46 4.6E-51 404.1 31.6 330 653-1018 2-337 (447)
53 KOG0463|consensus 100.0 1.7E-47 3.8E-52 395.9 21.6 352 648-1021 130-534 (641)
54 cd04169 RF3 RF3 subfamily. Pe 100.0 7.2E-46 1.6E-50 399.5 30.0 258 7-279 1-267 (267)
55 TIGR00475 selB selenocysteine- 100.0 5E-45 1.1E-49 432.9 36.5 323 652-1021 1-324 (581)
56 cd04170 EF-G_bact Elongation f 100.0 1.6E-43 3.4E-48 385.9 31.7 266 10-279 1-268 (268)
57 cd04168 TetM_like Tet(M)-like 100.0 3.7E-43 8.1E-48 372.5 27.1 236 10-279 1-237 (237)
58 KOG1143|consensus 100.0 3E-40 6.4E-45 342.3 30.6 442 526-1021 74-570 (591)
59 COG5257 GCD11 Translation init 100.0 1.3E-37 2.8E-42 318.8 29.3 334 650-1019 9-395 (415)
60 PRK05306 infB translation init 100.0 2.4E-35 5.1E-40 354.5 48.0 254 6-381 288-543 (787)
61 TIGR00487 IF-2 translation ini 100.0 2.8E-33 6.1E-38 330.3 47.7 251 7-380 86-340 (587)
62 CHL00189 infB translation init 100.0 1.8E-33 4E-38 334.8 45.1 258 6-380 242-500 (742)
63 PRK12736 elongation factor Tu; 100.0 1.4E-34 3.1E-39 330.7 31.0 274 4-382 8-297 (394)
64 CHL00071 tufA elongation facto 100.0 1.8E-34 4E-39 331.5 32.0 275 4-382 8-307 (409)
65 TIGR01394 TypA_BipA GTP-bindin 100.0 1.1E-34 2.4E-39 343.2 30.9 279 653-939 3-288 (594)
66 COG1160 Predicted GTPases [Gen 100.0 3.1E-34 6.7E-39 313.9 31.5 144 655-818 182-337 (444)
67 PTZ00141 elongation factor 1- 100.0 3.2E-34 7E-39 330.5 28.2 272 6-382 5-318 (446)
68 KOG0461|consensus 100.0 1.4E-34 3.1E-39 297.6 21.6 339 651-1014 7-379 (522)
69 PLN00043 elongation factor 1-a 100.0 4.2E-34 9E-39 329.2 26.3 272 5-381 4-317 (447)
70 KOG0462|consensus 100.0 3.7E-34 8.1E-39 312.7 22.7 329 654-1020 63-398 (650)
71 TIGR00485 EF-Tu translation el 100.0 2.5E-33 5.4E-38 321.2 30.6 274 4-382 8-297 (394)
72 COG5256 TEF1 Translation elong 100.0 2.2E-33 4.7E-38 301.2 26.6 273 6-386 5-320 (428)
73 PLN03126 Elongation factor Tu; 100.0 5.6E-33 1.2E-37 320.5 30.7 273 4-382 77-376 (478)
74 PRK00049 elongation factor Tu; 100.0 8.2E-33 1.8E-37 316.1 30.5 272 4-382 8-299 (396)
75 PRK12735 elongation factor Tu; 100.0 9.8E-33 2.1E-37 315.8 30.6 272 4-382 8-299 (396)
76 PLN03127 Elongation factor Tu; 100.0 3.1E-32 6.7E-37 313.3 31.9 273 4-381 57-349 (447)
77 PRK12317 elongation factor 1-a 100.0 1.3E-32 2.9E-37 319.4 28.9 273 6-383 4-311 (425)
78 TIGR02034 CysN sulfate adenyly 100.0 2.9E-32 6.2E-37 312.6 26.5 270 10-383 2-301 (406)
79 PRK10218 GTP-binding protein; 100.0 5.6E-32 1.2E-36 319.3 29.1 280 652-939 6-292 (607)
80 COG0481 LepA Membrane GTPase L 100.0 2.5E-32 5.4E-37 293.4 23.4 323 655-1016 13-344 (603)
81 PRK05124 cysN sulfate adenylyl 100.0 1E-31 2.2E-36 312.2 28.1 277 5-384 24-330 (474)
82 TIGR01393 lepA GTP-binding pro 100.0 2.8E-31 6.1E-36 315.4 29.8 264 653-939 5-277 (595)
83 COG1217 TypA Predicted membran 100.0 2.3E-31 5E-36 285.1 25.0 281 653-941 7-294 (603)
84 TIGR00483 EF-1_alpha translati 100.0 2.8E-31 6E-36 308.2 27.7 273 5-382 4-312 (426)
85 PRK05433 GTP-binding protein L 100.0 5E-31 1.1E-35 313.6 29.0 264 653-939 9-281 (600)
86 PTZ00327 eukaryotic translatio 100.0 8.8E-31 1.9E-35 299.9 26.5 260 6-382 32-351 (460)
87 COG0050 TufB GTPases - transla 100.0 6.4E-31 1.4E-35 266.3 20.0 273 4-382 8-297 (394)
88 TIGR03594 GTPase_EngA ribosome 100.0 1.1E-29 2.5E-34 297.1 31.9 155 655-840 176-341 (429)
89 PF00009 GTP_EFTU: Elongation 100.0 3.7E-31 8E-36 273.1 15.3 185 6-278 1-188 (188)
90 KOG0460|consensus 100.0 6.5E-31 1.4E-35 271.2 15.7 271 7-383 53-342 (449)
91 COG0532 InfB Translation initi 100.0 2.7E-27 5.7E-32 263.7 45.5 247 7-372 4-251 (509)
92 PRK04000 translation initiatio 100.0 3.4E-29 7.3E-34 287.1 28.7 264 4-384 5-320 (411)
93 PRK03003 GTP-binding protein D 100.0 1.7E-28 3.6E-33 287.8 34.0 154 655-840 215-379 (472)
94 PRK10512 selenocysteinyl-tRNA- 100.0 4E-29 8.6E-34 297.7 27.1 251 10-381 2-259 (614)
95 PRK00093 GTP-binding protein D 100.0 3.6E-28 7.8E-33 284.6 34.2 144 654-818 176-330 (435)
96 PRK05506 bifunctional sulfate 100.0 1.1E-28 2.4E-33 299.3 28.2 274 6-383 22-325 (632)
97 cd01885 EF2 EF2 (for archaea a 100.0 4.2E-29 9.1E-34 260.8 21.1 133 9-143 1-139 (222)
98 TIGR03680 eif2g_arch translati 100.0 3.4E-28 7.4E-33 279.3 28.7 259 7-382 3-313 (406)
99 cd01884 EF_Tu EF-Tu subfamily. 100.0 1.2E-28 2.7E-33 253.4 19.0 191 652-844 3-194 (195)
100 PRK09518 bifunctional cytidyla 100.0 5.1E-27 1.1E-31 287.8 34.8 155 655-841 454-619 (712)
101 TIGR00475 selB selenocysteine- 100.0 1.1E-27 2.4E-32 285.0 27.9 252 10-380 2-259 (581)
102 TIGR00487 IF-2 translation ini 100.0 1.9E-27 4.1E-32 280.9 27.2 246 649-936 85-339 (587)
103 PRK05306 infB translation init 100.0 1.9E-27 4.2E-32 286.3 26.9 249 648-937 287-542 (787)
104 COG3276 SelB Selenocysteine-sp 99.9 1.1E-26 2.5E-31 251.6 22.6 250 10-382 2-256 (447)
105 KOG1145|consensus 99.9 1.7E-26 3.6E-31 252.6 21.6 252 6-378 151-404 (683)
106 PRK07560 elongation factor EF- 99.9 2.5E-26 5.5E-31 282.0 25.0 282 651-939 20-375 (731)
107 KOG0458|consensus 99.9 3.2E-26 6.9E-31 254.4 23.2 272 5-380 174-488 (603)
108 TIGR00491 aIF-2 translation in 99.9 4.1E-26 8.9E-31 268.8 25.6 230 648-905 1-283 (590)
109 cd01884 EF_Tu EF-Tu subfamily. 99.9 1.5E-26 3.2E-31 238.0 19.0 127 9-142 3-131 (195)
110 PRK04004 translation initiatio 99.9 2E-25 4.2E-30 264.7 29.2 301 7-378 5-325 (586)
111 PRK04004 translation initiatio 99.9 1.1E-25 2.4E-30 266.8 26.9 246 647-920 2-312 (586)
112 COG5258 GTPBP1 GTPase [General 99.9 2.5E-25 5.4E-30 233.3 23.9 286 6-381 115-436 (527)
113 PRK00007 elongation factor G; 99.9 4E-25 8.6E-30 270.0 28.5 275 652-939 11-394 (693)
114 CHL00189 infB translation init 99.9 3.1E-25 6.7E-30 264.6 26.0 247 650-936 243-499 (742)
115 COG2895 CysN GTPases - Sulfate 99.9 1.4E-25 3E-30 233.9 19.7 296 6-407 4-330 (431)
116 PRK12739 elongation factor G; 99.9 4.5E-25 9.8E-30 269.7 27.3 269 651-939 8-391 (691)
117 KOG0052|consensus 99.9 1.2E-26 2.6E-31 248.6 10.7 309 651-1021 7-358 (391)
118 COG5257 GCD11 Translation init 99.9 1.5E-24 3.4E-29 223.0 25.2 311 6-444 8-362 (415)
119 PF00009 GTP_EFTU: Elongation 99.9 8.1E-26 1.8E-30 233.3 15.6 179 651-843 3-187 (188)
120 PRK00741 prfC peptide chain re 99.9 2.3E-24 5E-29 252.4 29.0 269 651-939 10-380 (526)
121 TIGR00484 EF-G translation elo 99.9 1.8E-24 4E-29 264.7 28.2 275 652-939 11-392 (689)
122 KOG0466|consensus 99.9 4E-26 8.6E-31 231.9 9.9 333 650-1018 37-439 (466)
123 TIGR00503 prfC peptide chain r 99.9 4.9E-24 1.1E-28 249.7 28.4 270 650-939 10-381 (527)
124 KOG1145|consensus 99.9 9.1E-25 2E-29 239.1 19.6 234 650-920 152-392 (683)
125 PRK12740 elongation factor G; 99.9 4.2E-24 9E-29 262.3 27.8 265 657-939 1-373 (668)
126 COG0480 FusA Translation elong 99.9 5.9E-24 1.3E-28 252.1 27.5 270 650-939 9-392 (697)
127 TIGR00491 aIF-2 translation in 99.9 1.9E-23 4.2E-28 246.2 31.5 291 7-378 3-323 (590)
128 PRK13351 elongation factor G; 99.9 7.5E-24 1.6E-28 260.2 28.7 269 651-939 8-390 (687)
129 COG0532 InfB Translation initi 99.9 2E-24 4.3E-29 240.9 21.3 235 648-920 2-246 (509)
130 cd01890 LepA LepA subfamily. 99.9 4E-24 8.6E-29 219.3 21.3 142 9-153 1-143 (179)
131 cd01883 EF1_alpha Eukaryotic e 99.9 1.2E-24 2.7E-29 229.6 16.3 190 653-842 1-216 (219)
132 cd01883 EF1_alpha Eukaryotic e 99.9 8.5E-25 1.8E-29 230.9 14.0 131 10-144 1-152 (219)
133 KOG0461|consensus 99.9 4.5E-24 9.8E-29 220.5 18.6 251 9-367 8-268 (522)
134 cd04166 CysN_ATPS CysN_ATPS su 99.9 3.2E-24 6.9E-29 224.7 17.9 186 654-841 2-204 (208)
135 TIGR00490 aEF-2 translation el 99.9 6.1E-24 1.3E-28 260.2 22.3 282 651-939 19-374 (720)
136 COG4108 PrfC Peptide chain rel 99.9 5.9E-24 1.3E-28 227.6 18.8 269 652-938 13-381 (528)
137 cd04166 CysN_ATPS CysN_ATPS su 99.9 2.9E-24 6.2E-29 225.0 15.8 131 10-144 1-145 (208)
138 cd04167 Snu114p Snu114p subfam 99.9 1.1E-23 2.4E-28 221.7 19.6 134 9-142 1-136 (213)
139 cd01891 TypA_BipA TypA (tyrosi 99.9 3.7E-23 8E-28 214.8 20.3 144 7-156 1-144 (194)
140 PF03764 EFG_IV: Elongation fa 99.9 1.2E-23 2.5E-28 199.6 14.8 119 467-588 1-120 (120)
141 PRK14845 translation initiatio 99.9 1.1E-22 2.3E-27 249.9 26.4 244 662-935 472-780 (1049)
142 cd01684 Tet_like_IV EF-G_domai 99.9 2.8E-23 6E-28 193.9 15.5 115 469-588 1-115 (115)
143 cd01888 eIF2_gamma eIF2-gamma 99.9 1.7E-22 3.7E-27 210.8 14.8 120 9-143 1-151 (203)
144 PLN00116 translation elongatio 99.9 2.1E-21 4.5E-26 241.3 26.2 283 652-939 20-471 (843)
145 cd01889 SelB_euk SelB subfamil 99.9 6.9E-22 1.5E-26 204.9 18.4 123 10-143 2-134 (192)
146 cd01434 EFG_mtEFG1_IV EFG_mtEF 99.9 5.6E-22 1.2E-26 186.4 14.2 116 471-588 1-116 (116)
147 cd01885 EF2 EF2 (for archaea a 99.9 8.2E-22 1.8E-26 206.0 16.1 189 653-845 2-222 (222)
148 PTZ00416 elongation factor 2; 99.9 7.3E-21 1.6E-25 235.8 27.1 284 652-939 20-467 (836)
149 cd04165 GTPBP1_like GTPBP1-lik 99.9 7.4E-22 1.6E-26 207.6 14.9 145 10-158 1-168 (224)
150 PRK14845 translation initiatio 99.9 2.4E-20 5.3E-25 229.2 29.4 275 21-380 474-782 (1049)
151 cd01680 EFG_like_IV Elongation 99.9 1.8E-21 3.9E-26 183.6 14.8 116 471-588 1-116 (116)
152 cd04165 GTPBP1_like GTPBP1-lik 99.9 1.9E-21 4.2E-26 204.5 16.4 175 654-844 2-223 (224)
153 cd01888 eIF2_gamma eIF2-gamma 99.9 2.7E-21 5.8E-26 201.8 16.1 169 652-847 1-203 (203)
154 KOG0459|consensus 99.9 3.2E-21 6.9E-26 204.3 14.1 289 5-385 76-393 (501)
155 cd01891 TypA_BipA TypA (tyrosi 99.9 1.7E-20 3.6E-25 194.9 18.3 189 653-845 4-194 (194)
156 cd01693 mtEFG2_like_IV mtEF-G2 99.8 5.4E-21 1.2E-25 181.0 12.4 116 469-588 1-120 (120)
157 cd00881 GTP_translation_factor 99.8 6E-20 1.3E-24 189.9 20.8 188 10-279 1-189 (189)
158 KOG0465|consensus 99.8 8.6E-21 1.9E-25 210.6 14.8 266 652-938 40-420 (721)
159 cd01889 SelB_euk SelB subfamil 99.8 4.4E-20 9.6E-25 191.3 17.9 170 653-845 2-188 (192)
160 cd01683 EF2_IV_snRNP EF-2_doma 99.8 2.8E-20 6E-25 186.4 13.6 129 466-598 1-178 (178)
161 cd04168 TetM_like Tet(M)-like 99.8 1.3E-19 2.8E-24 192.6 17.9 128 653-781 1-130 (237)
162 cd01886 EF-G Elongation factor 99.8 6.5E-20 1.4E-24 198.2 15.9 158 653-817 1-160 (270)
163 PF14492 EFG_II: Elongation Fa 99.8 1.6E-20 3.6E-25 160.1 8.3 75 392-466 1-75 (75)
164 cd04171 SelB SelB subfamily. 99.8 2.9E-19 6.2E-24 180.2 18.0 162 652-840 1-163 (164)
165 cd01890 LepA LepA subfamily. 99.8 2.2E-19 4.8E-24 184.0 17.3 173 653-845 2-179 (179)
166 cd00881 GTP_translation_factor 99.8 1.4E-18 3.1E-23 179.5 18.6 179 653-844 1-188 (189)
167 cd04167 Snu114p Snu114p subfam 99.8 7.3E-19 1.6E-23 185.1 16.6 189 653-845 2-213 (213)
168 KOG1144|consensus 99.8 1.7E-19 3.7E-24 202.8 12.0 248 645-920 469-794 (1064)
169 cd04169 RF3 RF3 subfamily. Pe 99.8 1.8E-18 3.9E-23 186.9 18.8 129 652-781 3-137 (267)
170 cd01681 aeEF2_snRNP_like_IV Th 99.8 6.8E-19 1.5E-23 178.2 13.5 128 466-597 1-177 (177)
171 cd04171 SelB SelB subfamily. 99.8 2.6E-18 5.7E-23 173.1 16.8 116 10-143 2-118 (164)
172 KOG0463|consensus 99.8 2.9E-18 6.2E-23 179.3 13.3 284 10-383 135-457 (641)
173 KOG1144|consensus 99.8 3.1E-18 6.7E-23 192.8 13.3 241 9-332 476-734 (1064)
174 KOG1143|consensus 99.8 2.3E-17 5E-22 172.6 17.9 287 10-381 169-490 (591)
175 PRK09554 feoB ferrous iron tra 99.7 1.5E-17 3.3E-22 202.7 17.1 239 8-276 3-263 (772)
176 COG1159 Era GTPase [General fu 99.7 2.1E-17 4.6E-22 172.4 14.9 117 7-144 5-129 (298)
177 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 4.4E-17 9.6E-22 165.0 17.1 119 9-146 1-119 (168)
178 COG1159 Era GTPase [General fu 99.7 2E-17 4.3E-22 172.7 14.6 181 648-862 3-197 (298)
179 PF02421 FeoB_N: Ferrous iron 99.7 1.1E-17 2.3E-22 163.1 9.6 147 653-838 2-156 (156)
180 COG1160 Predicted GTPases [Gen 99.7 4.9E-17 1.1E-21 179.2 15.6 116 7-143 177-303 (444)
181 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 1.2E-16 2.6E-21 161.8 16.5 159 653-841 2-164 (168)
182 cd03690 Tet_II Tet_II: This su 99.7 4E-17 8.6E-22 143.7 10.9 85 295-380 1-85 (85)
183 PRK15494 era GTPase Era; Provi 99.7 1.5E-16 3.2E-21 178.4 18.0 116 7-143 51-174 (339)
184 TIGR00436 era GTP-binding prot 99.7 1.7E-16 3.7E-21 173.2 17.7 111 10-142 2-120 (270)
185 PF02421 FeoB_N: Ferrous iron 99.7 3.5E-17 7.6E-22 159.5 10.6 109 10-142 2-118 (156)
186 cd04170 EF-G_bact Elongation f 99.7 2.5E-16 5.4E-21 171.9 18.0 128 653-781 1-130 (268)
187 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.8E-16 3.8E-21 160.5 15.0 117 10-144 1-122 (167)
188 cd03693 EF1_alpha_II EF1_alpha 99.7 1E-16 2.2E-21 143.2 11.3 88 850-939 2-89 (91)
189 cd01894 EngA1 EngA1 subfamily. 99.7 2.3E-16 5.1E-21 157.6 15.1 112 12-144 1-120 (157)
190 PRK00093 GTP-binding protein D 99.7 2.7E-16 5.9E-21 184.4 17.2 115 7-142 172-297 (435)
191 KOG0469|consensus 99.7 8.7E-17 1.9E-21 173.9 11.2 136 642-780 12-163 (842)
192 TIGR03594 GTPase_EngA ribosome 99.7 3.6E-16 7.9E-21 183.2 17.5 115 7-142 171-296 (429)
193 cd04092 mtEFG2_II_like mtEFG2_ 99.7 1.7E-16 3.6E-21 139.6 10.5 83 298-380 1-83 (83)
194 cd01895 EngA2 EngA2 subfamily. 99.7 1.3E-15 2.8E-20 154.8 17.4 116 8-144 2-128 (174)
195 cd04114 Rab30 Rab30 subfamily. 99.7 1.1E-15 2.4E-20 155.0 16.0 119 1-142 1-125 (169)
196 KOG0464|consensus 99.7 2.9E-17 6.3E-22 173.6 4.3 129 652-781 38-168 (753)
197 cd01864 Rab19 Rab19 subfamily. 99.7 1E-15 2.3E-20 154.5 14.9 116 7-142 2-121 (165)
198 PRK03003 GTP-binding protein D 99.7 9.2E-16 2E-20 180.4 16.7 117 6-143 209-336 (472)
199 cd03694 GTPBP_II Domain II of 99.7 4.4E-16 9.5E-21 137.7 10.4 85 853-937 1-87 (87)
200 TIGR00436 era GTP-binding prot 99.7 1.3E-15 2.8E-20 166.3 16.5 172 653-860 2-187 (270)
201 cd01898 Obg Obg subfamily. Th 99.7 2E-15 4.3E-20 153.2 16.0 112 10-143 2-128 (170)
202 cd03689 RF3_II RF3_II: this su 99.7 5.7E-16 1.2E-20 136.0 10.2 81 300-380 1-84 (85)
203 cd04151 Arl1 Arl1 subfamily. 99.7 1.6E-15 3.4E-20 152.0 14.8 110 10-144 1-115 (158)
204 PRK15494 era GTPase Era; Provi 99.6 7E-16 1.5E-20 172.9 13.0 179 648-862 49-241 (339)
205 cd04154 Arl2 Arl2 subfamily. 99.6 2.4E-15 5.2E-20 153.2 15.6 114 6-144 12-130 (173)
206 cd04088 EFG_mtEFG_II EFG_mtEFG 99.6 8.2E-16 1.8E-20 135.5 10.4 83 298-380 1-83 (83)
207 cd03697 EFTU_II EFTU_II: Elong 99.6 6.2E-16 1.3E-20 137.0 9.4 87 853-939 1-87 (87)
208 cd04157 Arl6 Arl6 subfamily. 99.6 2.9E-15 6.4E-20 150.6 15.5 112 10-144 1-119 (162)
209 cd03698 eRF3_II_like eRF3_II_l 99.6 1.2E-15 2.6E-20 133.9 10.8 83 852-937 1-83 (83)
210 cd00878 Arf_Arl Arf (ADP-ribos 99.6 2.9E-15 6.3E-20 150.1 15.1 110 10-144 1-115 (158)
211 KOG0092|consensus 99.6 1E-15 2.3E-20 148.3 11.1 162 651-845 5-169 (200)
212 cd04091 mtEFG1_II_like mtEFG1_ 99.6 1.3E-15 2.7E-20 133.2 10.5 81 298-380 1-81 (81)
213 cd04124 RabL2 RabL2 subfamily. 99.6 4.6E-15 9.9E-20 149.2 16.1 113 10-142 2-117 (161)
214 PRK00089 era GTPase Era; Revie 99.6 5.9E-15 1.3E-19 163.5 18.5 115 7-142 4-126 (292)
215 cd01897 NOG NOG1 is a nucleola 99.6 4.3E-15 9.4E-20 150.4 15.8 113 9-143 1-127 (168)
216 cd04113 Rab4 Rab4 subfamily. 99.6 3.6E-15 7.8E-20 149.9 14.6 113 10-142 2-118 (161)
217 cd04145 M_R_Ras_like M-Ras/R-R 99.6 4.5E-15 9.7E-20 149.6 15.3 112 9-142 3-120 (164)
218 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 5.6E-15 1.2E-19 150.5 16.0 112 7-143 14-130 (174)
219 COG2229 Predicted GTPase [Gene 99.6 1.1E-14 2.3E-19 140.8 16.6 127 9-146 11-138 (187)
220 cd01894 EngA1 EngA1 subfamily. 99.6 3.2E-15 6.8E-20 149.4 13.6 148 655-841 1-156 (157)
221 PRK09518 bifunctional cytidyla 99.6 2.6E-15 5.6E-20 184.8 15.6 117 6-143 448-575 (712)
222 KOG0466|consensus 99.6 4.6E-16 1E-20 159.0 7.4 245 8-366 38-336 (466)
223 cd04160 Arfrp1 Arfrp1 subfamil 99.6 4.1E-15 8.9E-20 150.4 14.3 160 654-840 2-166 (167)
224 cd01879 FeoB Ferrous iron tran 99.6 4.3E-15 9.3E-20 148.7 14.0 107 13-143 1-115 (158)
225 PRK15467 ethanolamine utilizat 99.6 4.7E-15 1E-19 148.1 13.6 101 9-144 2-106 (158)
226 cd04149 Arf6 Arf6 subfamily. 99.6 8.3E-15 1.8E-19 148.3 15.1 111 8-143 9-124 (168)
227 KOG0094|consensus 99.6 1E-14 2.2E-19 141.1 14.5 175 638-845 9-187 (221)
228 cd00879 Sar1 Sar1 subfamily. 99.6 7.6E-15 1.7E-19 152.0 14.8 113 7-144 18-135 (190)
229 smart00178 SAR Sar1p-like memb 99.6 7.9E-15 1.7E-19 150.8 14.7 114 6-144 15-133 (184)
230 cd04150 Arf1_5_like Arf1-Arf5- 99.6 1.6E-14 3.4E-19 144.9 15.9 109 10-143 2-115 (159)
231 cd01895 EngA2 EngA2 subfamily. 99.6 1.5E-14 3.3E-19 146.9 16.1 159 651-840 2-172 (174)
232 cd01864 Rab19 Rab19 subfamily. 99.6 7.9E-15 1.7E-19 148.1 13.8 154 652-840 4-163 (165)
233 cd04089 eRF3_II eRF3_II: domai 99.6 5.2E-15 1.1E-19 129.5 10.7 82 852-937 1-82 (82)
234 smart00177 ARF ARF-like small 99.6 2.2E-14 4.8E-19 146.2 16.7 112 8-144 13-129 (175)
235 cd04106 Rab23_lke Rab23-like s 99.6 9.7E-15 2.1E-19 146.9 13.7 115 10-142 2-119 (162)
236 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 1.3E-14 2.9E-19 149.0 14.9 114 10-143 5-123 (183)
237 smart00173 RAS Ras subfamily o 99.6 1.3E-14 2.7E-19 146.4 14.4 111 10-142 2-118 (164)
238 PRK00089 era GTPase Era; Revie 99.6 2.4E-14 5.2E-19 158.7 17.9 161 649-843 3-171 (292)
239 cd04164 trmE TrmE (MnmE, ThdF, 99.6 1.2E-14 2.7E-19 145.0 14.1 111 10-143 3-121 (157)
240 cd00877 Ran Ran (Ras-related n 99.6 2.2E-14 4.8E-19 144.9 15.7 113 10-142 2-117 (166)
241 cd01860 Rab5_related Rab5-rela 99.6 1.6E-14 3.5E-19 145.4 14.6 113 10-142 3-119 (163)
242 smart00175 RAB Rab subfamily o 99.6 1.4E-14 3E-19 146.0 14.0 113 10-142 2-118 (164)
243 cd04158 ARD1 ARD1 subfamily. 99.6 2.8E-14 6.1E-19 144.7 16.3 109 10-143 1-114 (169)
244 cd01879 FeoB Ferrous iron tran 99.6 5.3E-15 1.1E-19 148.0 10.8 146 657-841 2-155 (158)
245 cd01862 Rab7 Rab7 subfamily. 99.6 2.9E-14 6.2E-19 144.9 16.3 111 10-142 2-122 (172)
246 cd01861 Rab6 Rab6 subfamily. 99.6 1.9E-14 4E-19 144.6 14.7 114 9-142 1-118 (161)
247 PRK04213 GTP-binding protein; 99.6 2.2E-14 4.8E-19 149.9 15.7 127 4-157 5-157 (201)
248 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 4.1E-14 9E-19 147.8 17.7 113 10-142 2-123 (201)
249 cd04120 Rab12 Rab12 subfamily. 99.6 2.3E-14 5E-19 148.6 15.5 111 10-142 2-118 (202)
250 PLN00223 ADP-ribosylation fact 99.6 3.4E-14 7.4E-19 145.5 16.3 112 8-144 17-133 (181)
251 cd01865 Rab3 Rab3 subfamily. 99.6 1.7E-14 3.7E-19 145.7 13.8 114 9-142 2-119 (165)
252 cd04157 Arl6 Arl6 subfamily. 99.6 1.9E-14 4.1E-19 144.7 14.2 153 654-840 2-161 (162)
253 cd04154 Arl2 Arl2 subfamily. 99.6 2.3E-14 5.1E-19 145.9 14.8 155 650-840 13-172 (173)
254 cd04124 RabL2 RabL2 subfamily. 99.6 1.7E-14 3.7E-19 145.0 13.5 151 654-841 3-156 (161)
255 cd01866 Rab2 Rab2 subfamily. 99.6 2.2E-14 4.8E-19 145.3 14.4 116 7-142 3-122 (168)
256 cd04122 Rab14 Rab14 subfamily. 99.6 2.4E-14 5.1E-19 144.8 14.5 115 8-142 2-120 (166)
257 PTZ00369 Ras-like protein; Pro 99.6 2.1E-14 4.5E-19 148.5 14.0 113 8-142 5-123 (189)
258 cd03696 selB_II selB_II: this 99.6 1.2E-14 2.7E-19 127.7 10.5 83 853-937 1-83 (83)
259 cd01898 Obg Obg subfamily. Th 99.6 2.2E-14 4.7E-19 145.6 13.9 153 653-841 2-169 (170)
260 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 3E-14 6.6E-19 144.0 14.8 115 8-142 2-120 (166)
261 cd03691 BipA_TypA_II BipA_TypA 99.6 1.4E-14 3E-19 128.5 10.7 83 298-380 1-86 (86)
262 cd04138 H_N_K_Ras_like H-Ras/N 99.6 6.5E-14 1.4E-18 140.6 17.1 111 10-142 3-119 (162)
263 TIGR03598 GTPase_YsxC ribosome 99.6 4.5E-14 9.7E-19 144.6 15.9 148 649-818 16-176 (179)
264 cd01863 Rab18 Rab18 subfamily. 99.6 4.4E-14 9.5E-19 142.0 15.5 113 10-142 2-119 (161)
265 cd04163 Era Era subfamily. Er 99.6 7.5E-14 1.6E-18 140.6 17.3 114 8-142 3-124 (168)
266 cd04159 Arl10_like Arl10-like 99.6 4.5E-14 9.7E-19 141.0 15.5 110 11-144 2-116 (159)
267 cd04136 Rap_like Rap-like subf 99.6 3.8E-14 8.1E-19 142.7 15.0 112 9-142 2-119 (163)
268 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 5.5E-14 1.2E-18 141.7 16.1 110 11-144 2-114 (164)
269 cd01867 Rab8_Rab10_Rab13_like 99.6 3.5E-14 7.6E-19 143.7 14.8 116 7-142 2-121 (167)
270 cd04119 RJL RJL (RabJ-Like) su 99.6 3.5E-14 7.7E-19 143.5 14.6 113 10-142 2-123 (168)
271 cd04156 ARLTS1 ARLTS1 subfamil 99.6 3.7E-14 8E-19 142.3 14.5 109 11-143 2-115 (160)
272 cd01878 HflX HflX subfamily. 99.6 6.3E-14 1.4E-18 146.8 16.8 117 6-143 39-167 (204)
273 PTZ00133 ADP-ribosylation fact 99.6 5.3E-14 1.1E-18 144.3 15.7 112 8-144 17-133 (182)
274 cd04175 Rap1 Rap1 subgroup. T 99.6 4.2E-14 9.1E-19 142.6 14.8 112 10-142 3-119 (164)
275 cd01868 Rab11_like Rab11-like. 99.6 4.4E-14 9.4E-19 142.6 14.7 115 8-142 3-121 (165)
276 cd04140 ARHI_like ARHI subfami 99.6 4.9E-14 1.1E-18 142.3 15.0 112 10-142 3-121 (165)
277 PRK12299 obgE GTPase CgtA; Rev 99.6 4.7E-14 1E-18 156.8 16.1 118 5-143 155-285 (335)
278 cd01893 Miro1 Miro1 subfamily. 99.6 9.2E-14 2E-18 140.5 16.9 112 10-143 2-117 (166)
279 PLN03110 Rab GTPase; Provision 99.6 5E-14 1.1E-18 148.6 15.5 119 4-142 8-130 (216)
280 COG0218 Predicted GTPase [Gene 99.6 6.4E-14 1.4E-18 139.0 15.1 132 4-158 20-165 (200)
281 KOG0467|consensus 99.6 2.2E-14 4.8E-19 163.7 13.3 125 653-778 11-135 (887)
282 cd04115 Rab33B_Rab33A Rab33B/R 99.6 5.3E-14 1.2E-18 142.8 15.0 116 7-142 1-122 (170)
283 cd04123 Rab21 Rab21 subfamily. 99.6 4.5E-14 9.7E-19 141.8 14.2 113 10-142 2-118 (162)
284 cd04106 Rab23_lke Rab23-like s 99.6 3.9E-14 8.5E-19 142.5 13.8 152 653-840 2-160 (162)
285 cd01860 Rab5_related Rab5-rela 99.5 3.8E-14 8.3E-19 142.7 13.4 157 652-842 2-162 (163)
286 cd04147 Ras_dva Ras-dva subfam 99.5 4.6E-14 1E-18 147.0 14.4 112 10-143 1-118 (198)
287 cd03699 lepA_II lepA_II: This 99.5 2.3E-14 5.1E-19 126.7 10.3 82 298-380 1-86 (86)
288 cd04161 Arl2l1_Arl13_like Arl2 99.5 8.1E-14 1.8E-18 140.9 15.5 111 10-145 1-116 (167)
289 PRK04213 GTP-binding protein; 99.5 7.5E-14 1.6E-18 145.9 15.8 155 651-844 9-193 (201)
290 PRK05291 trmE tRNA modificatio 99.5 3.2E-14 6.9E-19 165.4 14.2 111 9-142 216-334 (449)
291 KOG1423|consensus 99.5 4.7E-14 1E-18 145.6 13.6 118 5-143 69-199 (379)
292 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.5 5.7E-14 1.2E-18 142.7 14.3 112 9-142 3-120 (172)
293 cd04139 RalA_RalB RalA/RalB su 99.5 9.5E-14 2.1E-18 139.8 15.8 113 10-143 2-119 (164)
294 TIGR00231 small_GTP small GTP- 99.5 3.6E-14 7.9E-19 141.4 12.5 115 9-144 2-123 (161)
295 PRK12299 obgE GTPase CgtA; Rev 99.5 4.4E-14 9.5E-19 157.1 14.3 160 648-843 154-328 (335)
296 cd01897 NOG NOG1 is a nucleola 99.5 5.5E-14 1.2E-18 142.3 13.9 151 653-841 2-166 (168)
297 COG0218 Predicted GTPase [Gene 99.5 1E-13 2.2E-18 137.5 15.2 159 651-842 24-196 (200)
298 cd04112 Rab26 Rab26 subfamily. 99.5 4.7E-14 1E-18 146.1 13.5 114 10-142 2-119 (191)
299 PLN03118 Rab family protein; P 99.5 9.7E-14 2.1E-18 146.1 16.0 116 6-142 12-133 (211)
300 cd04110 Rab35 Rab35 subfamily. 99.5 7.9E-14 1.7E-18 145.3 15.1 117 6-142 4-123 (199)
301 cd04116 Rab9 Rab9 subfamily. 99.5 1.3E-13 2.9E-18 139.8 16.4 116 7-142 4-127 (170)
302 cd04149 Arf6 Arf6 subfamily. 99.5 6.6E-14 1.4E-18 141.6 14.0 154 651-840 9-167 (168)
303 cd04120 Rab12 Rab12 subfamily. 99.5 6.2E-14 1.4E-18 145.4 14.1 153 654-841 3-161 (202)
304 TIGR03598 GTPase_YsxC ribosome 99.5 4.4E-14 9.5E-19 144.7 12.7 116 5-143 15-143 (179)
305 cd01861 Rab6 Rab6 subfamily. 99.5 9.1E-14 2E-18 139.6 14.8 152 654-841 3-160 (161)
306 cd04155 Arl3 Arl3 subfamily. 99.5 7.1E-14 1.5E-18 142.3 14.2 115 5-144 11-130 (173)
307 cd04151 Arl1 Arl1 subfamily. 99.5 6.5E-14 1.4E-18 140.3 13.5 151 654-840 2-157 (158)
308 cd01865 Rab3 Rab3 subfamily. 99.5 5.4E-14 1.2E-18 142.0 13.1 157 652-842 2-162 (165)
309 cd01866 Rab2 Rab2 subfamily. 99.5 6.3E-14 1.4E-18 142.0 13.5 156 652-841 5-164 (168)
310 PRK12298 obgE GTPase CgtA; Rev 99.5 2.8E-14 6.1E-19 161.7 12.0 178 649-861 156-357 (390)
311 cd04177 RSR1 RSR1 subgroup. R 99.5 8.6E-14 1.9E-18 141.0 14.3 111 10-142 3-119 (168)
312 cd04101 RabL4 RabL4 (Rab-like4 99.5 9.5E-14 2.1E-18 140.0 14.5 114 10-142 2-120 (164)
313 TIGR02729 Obg_CgtA Obg family 99.5 1.2E-13 2.6E-18 153.6 16.5 118 5-143 154-287 (329)
314 cd04176 Rap2 Rap2 subgroup. T 99.5 1.1E-13 2.3E-18 139.5 14.6 111 10-142 3-119 (163)
315 PRK12298 obgE GTPase CgtA; Rev 99.5 1.1E-13 2.5E-18 156.8 16.4 116 6-142 157-288 (390)
316 cd04113 Rab4 Rab4 subfamily. 99.5 5.3E-14 1.1E-18 141.4 12.3 151 654-840 3-159 (161)
317 cd04150 Arf1_5_like Arf1-Arf5- 99.5 1.1E-13 2.4E-18 138.7 14.6 152 653-840 2-158 (159)
318 cd00154 Rab Rab family. Rab G 99.5 1.9E-13 4.1E-18 136.4 16.3 113 10-142 2-118 (159)
319 cd04107 Rab32_Rab38 Rab38/Rab3 99.5 6.3E-14 1.4E-18 146.4 13.2 154 654-842 3-167 (201)
320 cd04127 Rab27A Rab27a subfamil 99.5 7.7E-14 1.7E-18 143.1 13.6 118 7-142 3-133 (180)
321 smart00176 RAN Ran (Ras-relate 99.5 1.2E-13 2.7E-18 143.0 15.1 109 14-142 1-112 (200)
322 PLN03071 GTP-binding nuclear p 99.5 1.5E-13 3.2E-18 145.1 16.0 117 6-142 11-130 (219)
323 cd01868 Rab11_like Rab11-like. 99.5 7.8E-14 1.7E-18 140.8 13.1 154 652-841 4-163 (165)
324 COG0486 ThdF Predicted GTPase 99.5 5.9E-14 1.3E-18 155.5 13.1 114 9-144 218-339 (454)
325 cd03695 CysN_NodQ_II CysN_NodQ 99.5 6.9E-14 1.5E-18 121.6 10.9 81 853-937 1-81 (81)
326 TIGR02528 EutP ethanolamine ut 99.5 3.5E-14 7.7E-19 139.5 10.2 96 10-142 2-101 (142)
327 cd01867 Rab8_Rab10_Rab13_like 99.5 9.6E-14 2.1E-18 140.5 13.5 156 652-841 4-163 (167)
328 cd04145 M_R_Ras_like M-Ras/R-R 99.5 9.2E-14 2E-18 140.0 13.4 153 652-841 3-162 (164)
329 PRK00454 engB GTP-binding prot 99.5 1.6E-13 3.4E-18 142.9 15.3 117 4-143 20-149 (196)
330 cd04137 RheB Rheb (Ras Homolog 99.5 1.1E-13 2.3E-18 142.0 13.8 113 9-142 2-119 (180)
331 TIGR00450 mnmE_trmE_thdF tRNA 99.5 1.5E-13 3.2E-18 158.7 16.4 114 8-143 203-324 (442)
332 cd01882 BMS1 Bms1. Bms1 is an 99.5 2.8E-14 6.1E-19 150.9 9.6 158 6-192 37-210 (225)
333 cd04126 Rab20 Rab20 subfamily. 99.5 1.6E-13 3.5E-18 143.9 15.1 109 10-143 2-114 (220)
334 cd04116 Rab9 Rab9 subfamily. 99.5 1.2E-13 2.6E-18 140.1 13.6 153 652-840 6-168 (170)
335 cd04121 Rab40 Rab40 subfamily. 99.5 2.2E-13 4.8E-18 139.9 15.4 117 6-142 4-123 (189)
336 cd00880 Era_like Era (E. coli 99.5 2.6E-13 5.7E-18 135.3 15.7 111 13-143 1-118 (163)
337 cd04144 Ras2 Ras2 subfamily. 99.5 1.3E-13 2.9E-18 142.5 13.9 111 10-142 1-119 (190)
338 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 1E-13 2.2E-18 140.1 12.7 154 652-841 3-162 (166)
339 cd04108 Rab36_Rab34 Rab34/Rab3 99.5 2.9E-13 6.3E-18 137.3 16.0 113 10-142 2-119 (170)
340 PRK09554 feoB ferrous iron tra 99.5 6.3E-14 1.4E-18 171.2 13.2 154 650-842 2-167 (772)
341 cd04142 RRP22 RRP22 subfamily. 99.5 1.8E-13 4E-18 142.0 14.8 113 10-142 2-129 (198)
342 cd01863 Rab18 Rab18 subfamily. 99.5 1.1E-13 2.3E-18 139.2 12.6 153 653-840 2-159 (161)
343 cd04136 Rap_like Rap-like subf 99.5 1.2E-13 2.6E-18 139.1 13.0 151 653-840 3-160 (163)
344 TIGR02729 Obg_CgtA Obg family 99.5 1.3E-13 2.9E-18 153.2 14.5 159 647-842 152-328 (329)
345 KOG0084|consensus 99.5 9.1E-14 2E-18 135.4 11.3 153 653-841 11-170 (205)
346 cd04138 H_N_K_Ras_like H-Ras/N 99.5 1.2E-13 2.7E-18 138.6 12.8 150 653-840 3-159 (162)
347 cd04158 ARD1 ARD1 subfamily. 99.5 1.1E-13 2.4E-18 140.4 12.4 154 654-843 2-161 (169)
348 cd04122 Rab14 Rab14 subfamily. 99.5 1.6E-13 3.4E-18 138.8 13.5 155 652-840 3-161 (166)
349 PRK12296 obgE GTPase CgtA; Rev 99.5 2.6E-13 5.7E-18 156.0 16.8 116 5-142 156-297 (500)
350 cd04114 Rab30 Rab30 subfamily. 99.5 1.1E-13 2.5E-18 140.2 12.4 154 651-840 7-166 (169)
351 cd04115 Rab33B_Rab33A Rab33B/R 99.5 2.3E-13 5E-18 138.1 14.7 158 651-841 2-167 (170)
352 cd04146 RERG_RasL11_like RERG/ 99.5 1.3E-13 2.7E-18 139.3 12.7 112 10-142 1-119 (165)
353 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 2.7E-13 5.9E-18 138.1 15.2 154 651-840 15-173 (174)
354 cd00154 Rab Rab family. Rab G 99.5 1.8E-13 4E-18 136.5 13.7 153 653-839 2-158 (159)
355 smart00175 RAB Rab subfamily o 99.5 1.2E-13 2.7E-18 139.0 12.5 154 653-842 2-161 (164)
356 TIGR03156 GTP_HflX GTP-binding 99.5 1.8E-13 4E-18 153.5 15.0 115 7-142 188-314 (351)
357 cd04132 Rho4_like Rho4-like su 99.5 5.2E-13 1.1E-17 137.8 17.3 113 10-142 2-118 (187)
358 cd01862 Rab7 Rab7 subfamily. 99.5 1.6E-13 3.5E-18 139.4 13.3 154 653-841 2-165 (172)
359 TIGR03156 GTP_HflX GTP-binding 99.5 1.5E-13 3.3E-18 154.1 14.2 146 652-840 190-349 (351)
360 cd04127 Rab27A Rab27a subfamil 99.5 2.1E-13 4.6E-18 139.8 14.2 155 652-840 5-174 (180)
361 cd04109 Rab28 Rab28 subfamily. 99.5 2.1E-13 4.5E-18 144.0 14.5 112 10-142 2-122 (215)
362 cd04118 Rab24 Rab24 subfamily. 99.5 2.8E-13 6E-18 140.6 15.2 114 10-142 2-118 (193)
363 KOG0092|consensus 99.5 1.3E-13 2.8E-18 133.8 11.7 115 9-143 6-124 (200)
364 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.5 1.5E-13 3.3E-18 141.2 13.0 161 650-842 2-169 (183)
365 cd00877 Ran Ran (Ras-related n 99.5 9.4E-14 2E-18 140.3 11.3 151 654-842 3-158 (166)
366 cd04119 RJL RJL (RabJ-Like) su 99.5 1.6E-13 3.6E-18 138.6 13.1 155 653-841 2-165 (168)
367 cd04121 Rab40 Rab40 subfamily. 99.5 1.9E-13 4.2E-18 140.4 13.6 154 652-841 7-165 (189)
368 KOG0084|consensus 99.5 3E-13 6.6E-18 131.8 14.0 119 4-142 5-127 (205)
369 cd04161 Arl2l1_Arl13_like Arl2 99.5 2.1E-13 4.6E-18 137.9 13.7 158 653-839 1-165 (167)
370 PLN03108 Rab family protein; P 99.5 3.2E-13 7E-18 141.8 15.5 118 5-142 3-124 (210)
371 PLN00223 ADP-ribosylation fact 99.5 2E-13 4.3E-18 139.8 13.4 156 651-842 17-177 (181)
372 PRK15467 ethanolamine utilizat 99.5 1.1E-13 2.3E-18 138.3 11.2 141 653-843 3-147 (158)
373 cd04140 ARHI_like ARHI subfami 99.5 2E-13 4.4E-18 137.8 13.2 153 653-840 3-162 (165)
374 cd04112 Rab26 Rab26 subfamily. 99.5 2E-13 4.4E-18 141.3 13.6 154 654-842 3-162 (191)
375 cd03700 eEF2_snRNP_like_II EF2 99.5 1.1E-13 2.3E-18 124.4 9.9 82 298-379 1-92 (93)
376 PRK00454 engB GTP-binding prot 99.5 4.6E-13 1E-17 139.3 16.3 157 651-842 24-193 (196)
377 PRK12296 obgE GTPase CgtA; Rev 99.5 2.1E-13 4.6E-18 156.7 14.9 159 647-842 154-339 (500)
378 cd00879 Sar1 Sar1 subfamily. 99.5 1.5E-13 3.3E-18 142.2 12.4 157 649-841 17-189 (190)
379 cd01874 Cdc42 Cdc42 subfamily. 99.5 7.8E-13 1.7E-17 134.7 17.4 113 9-143 2-119 (175)
380 cd00878 Arf_Arl Arf (ADP-ribos 99.5 2.7E-13 5.9E-18 135.7 13.8 151 654-840 2-157 (158)
381 PF00025 Arf: ADP-ribosylation 99.5 1.3E-13 2.8E-18 140.3 11.5 115 6-145 12-131 (175)
382 cd04159 Arl10_like Arl10-like 99.5 3E-13 6.5E-18 135.0 14.0 152 654-840 2-158 (159)
383 PRK05291 trmE tRNA modificatio 99.5 1.2E-13 2.6E-18 160.6 12.6 147 652-843 216-370 (449)
384 smart00178 SAR Sar1p-like memb 99.5 3.1E-13 6.7E-18 138.9 14.2 157 651-840 17-182 (184)
385 cd04175 Rap1 Rap1 subgroup. T 99.5 2.3E-13 5E-18 137.2 13.1 152 653-841 3-161 (164)
386 cd04133 Rop_like Rop subfamily 99.5 6.3E-13 1.4E-17 135.0 16.2 113 9-142 2-118 (176)
387 cd04164 trmE TrmE (MnmE, ThdF, 99.5 3.4E-13 7.4E-18 134.5 13.9 145 653-841 3-155 (157)
388 smart00176 RAN Ran (Ras-relate 99.5 1.8E-13 3.9E-18 141.7 12.2 150 657-842 1-153 (200)
389 cd04098 eEF2_C_snRNP eEF2_C_sn 99.5 3E-14 6.6E-19 123.6 5.2 70 593-662 1-72 (80)
390 cd00876 Ras Ras family. The R 99.5 3.5E-13 7.5E-18 135.0 13.8 113 10-143 1-118 (160)
391 cd04108 Rab36_Rab34 Rab34/Rab3 99.5 2.7E-13 5.9E-18 137.5 13.1 155 654-841 3-163 (170)
392 smart00177 ARF ARF-like small 99.5 3.3E-13 7.1E-18 137.6 13.7 155 651-841 13-172 (175)
393 cd04163 Era Era subfamily. Er 99.5 8.1E-13 1.7E-17 133.1 16.5 158 650-841 2-167 (168)
394 cd04135 Tc10 TC10 subfamily. 99.5 6.7E-13 1.5E-17 135.2 15.9 113 10-143 2-118 (174)
395 COG0486 ThdF Predicted GTPase 99.5 2.2E-13 4.7E-18 151.0 13.0 151 652-843 218-376 (454)
396 cd04110 Rab35 Rab35 subfamily. 99.5 3E-13 6.5E-18 141.0 13.5 155 652-842 7-166 (199)
397 PRK12297 obgE GTPase CgtA; Rev 99.5 6.8E-13 1.5E-17 151.1 17.2 116 6-142 156-287 (424)
398 PTZ00369 Ras-like protein; Pro 99.5 2.8E-13 6.1E-18 140.0 12.9 157 651-842 5-166 (189)
399 cd01875 RhoG RhoG subfamily. 99.5 8.4E-13 1.8E-17 136.6 16.4 114 9-143 4-121 (191)
400 cd01882 BMS1 Bms1. Bms1 is an 99.5 1.6E-12 3.5E-17 137.5 18.8 182 651-863 39-221 (225)
401 cd01881 Obg_like The Obg-like 99.5 4.8E-13 1E-17 136.4 14.4 110 13-143 1-134 (176)
402 cd01878 HflX HflX subfamily. 99.5 3.1E-13 6.8E-18 141.6 13.3 148 652-841 42-203 (204)
403 cd04128 Spg1 Spg1p. Spg1p (se 99.5 5.7E-13 1.2E-17 136.5 14.9 112 10-142 2-117 (182)
404 smart00173 RAS Ras subfamily o 99.5 3E-13 6.5E-18 136.3 12.7 153 653-842 2-161 (164)
405 cd04117 Rab15 Rab15 subfamily. 99.5 6.9E-13 1.5E-17 133.3 15.2 113 10-142 2-118 (161)
406 TIGR02528 EutP ethanolamine ut 99.5 1.3E-13 2.9E-18 135.3 9.8 135 654-839 3-141 (142)
407 cd01881 Obg_like The Obg-like 99.5 3.2E-13 7E-18 137.7 12.9 149 656-840 1-174 (176)
408 PLN03071 GTP-binding nuclear p 99.5 3E-13 6.6E-18 142.8 13.1 158 649-842 11-171 (219)
409 cd01892 Miro2 Miro2 subfamily. 99.5 6.6E-13 1.4E-17 134.5 15.0 116 6-142 2-121 (169)
410 cd01871 Rac1_like Rac1-like su 99.5 9.5E-13 2.1E-17 134.0 16.2 113 10-143 3-119 (174)
411 cd04111 Rab39 Rab39 subfamily. 99.5 5.3E-13 1.2E-17 140.1 14.7 114 9-142 3-122 (211)
412 cd04176 Rap2 Rap2 subgroup. T 99.5 3.7E-13 8E-18 135.5 13.0 152 653-841 3-161 (163)
413 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.5 4.2E-13 9.2E-18 136.3 13.5 156 652-842 3-163 (172)
414 PRK12297 obgE GTPase CgtA; Rev 99.5 3.6E-13 7.8E-18 153.3 14.3 155 648-842 154-326 (424)
415 cd04144 Ras2 Ras2 subfamily. 99.5 2.7E-13 5.8E-18 140.3 12.1 152 654-842 2-162 (190)
416 cd04134 Rho3 Rho3 subfamily. 99.5 6.9E-13 1.5E-17 137.1 15.1 115 9-144 1-119 (189)
417 PF10662 PduV-EutP: Ethanolami 99.5 2.4E-13 5.2E-18 129.3 10.4 97 9-142 2-102 (143)
418 cd04090 eEF2_II_snRNP Loc2 eEF 99.5 3E-13 6.5E-18 121.7 10.5 81 298-378 1-91 (94)
419 cd04143 Rhes_like Rhes_like su 99.5 6.8E-13 1.5E-17 142.1 15.1 112 10-142 2-126 (247)
420 cd01893 Miro1 Miro1 subfamily. 99.5 5.2E-13 1.1E-17 135.0 13.5 156 654-841 3-162 (166)
421 cd04128 Spg1 Spg1p. Spg1p (se 99.5 5.3E-13 1.1E-17 136.8 13.7 156 654-842 3-165 (182)
422 cd04109 Rab28 Rab28 subfamily. 99.5 5.3E-13 1.1E-17 140.9 14.0 154 654-842 3-165 (215)
423 cd04125 RabA_like RabA-like su 99.5 6.6E-13 1.4E-17 137.1 14.4 113 10-142 2-118 (188)
424 TIGR00231 small_GTP small GTP- 99.5 1.7E-13 3.8E-18 136.4 9.8 150 652-839 2-160 (161)
425 COG0370 FeoB Fe2+ transport sy 99.5 2.7E-13 5.8E-18 156.6 12.2 151 650-842 2-163 (653)
426 TIGR00450 mnmE_trmE_thdF tRNA 99.5 4.3E-13 9.3E-18 154.9 13.9 135 651-816 203-345 (442)
427 KOG0468|consensus 99.5 2.1E-13 4.6E-18 152.7 10.9 130 650-780 127-262 (971)
428 cd01875 RhoG RhoG subfamily. 99.5 7.4E-13 1.6E-17 137.0 14.3 161 651-842 3-176 (191)
429 cd00157 Rho Rho (Ras homology) 99.5 8.3E-13 1.8E-17 134.0 14.5 114 10-144 2-119 (171)
430 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 7.1E-13 1.5E-17 133.6 13.8 156 655-840 3-163 (164)
431 PRK11058 GTPase HflX; Provisio 99.5 8.7E-13 1.9E-17 151.4 16.1 114 8-142 197-322 (426)
432 cd04133 Rop_like Rop subfamily 99.5 2.7E-13 6E-18 137.7 10.5 158 654-842 4-172 (176)
433 cd01874 Cdc42 Cdc42 subfamily. 99.4 7.6E-13 1.6E-17 134.8 13.8 155 653-840 3-172 (175)
434 cd04156 ARLTS1 ARLTS1 subfamil 99.4 8.3E-13 1.8E-17 132.5 13.8 152 654-840 2-159 (160)
435 KOG0094|consensus 99.4 3.8E-12 8.1E-17 123.4 17.4 119 5-143 19-142 (221)
436 cd04118 Rab24 Rab24 subfamily. 99.4 5E-13 1.1E-17 138.7 12.5 157 654-842 3-165 (193)
437 TIGR00437 feoB ferrous iron tr 99.4 2.4E-13 5.2E-18 162.6 11.5 145 658-841 1-153 (591)
438 PLN03118 Rab family protein; P 99.4 7.5E-13 1.6E-17 139.4 13.9 157 651-842 14-176 (211)
439 PLN03110 Rab GTPase; Provision 99.4 6.6E-13 1.4E-17 140.1 13.2 155 652-842 13-173 (216)
440 cd01871 Rac1_like Rac1-like su 99.4 1.2E-12 2.6E-17 133.2 14.3 157 653-840 3-172 (174)
441 cd04155 Arl3 Arl3 subfamily. 99.4 1.2E-12 2.7E-17 133.2 14.4 156 649-840 12-172 (173)
442 cd04142 RRP22 RRP22 subfamily. 99.4 4.4E-13 9.5E-18 139.1 11.0 155 653-842 2-173 (198)
443 cd04123 Rab21 Rab21 subfamily. 99.4 9.3E-13 2E-17 132.2 13.1 153 653-841 2-160 (162)
444 PTZ00133 ADP-ribosylation fact 99.4 9.4E-13 2E-17 135.0 13.3 156 651-842 17-177 (182)
445 cd04117 Rab15 Rab15 subfamily. 99.4 1.2E-12 2.7E-17 131.4 13.8 152 653-840 2-159 (161)
446 cd04101 RabL4 RabL4 (Rab-like4 99.4 1.2E-12 2.7E-17 131.8 13.8 156 653-840 2-161 (164)
447 KOG0078|consensus 99.4 1.2E-12 2.7E-17 129.8 13.0 152 653-840 14-171 (207)
448 cd04134 Rho3 Rho3 subfamily. 99.4 8.8E-13 1.9E-17 136.3 12.7 159 654-843 3-174 (189)
449 cd01870 RhoA_like RhoA-like su 99.4 1.6E-12 3.4E-17 132.6 14.5 113 9-143 2-119 (175)
450 TIGR00437 feoB ferrous iron tr 99.4 7.9E-13 1.7E-17 158.2 14.1 104 15-142 1-112 (591)
451 cd00880 Era_like Era (E. coli 99.4 1.3E-12 2.8E-17 130.3 13.5 152 657-840 2-161 (163)
452 cd04177 RSR1 RSR1 subgroup. R 99.4 9.3E-13 2E-17 133.4 12.5 155 653-841 3-162 (168)
453 cd04143 Rhes_like Rhes_like su 99.4 1.1E-12 2.4E-17 140.5 13.3 157 653-845 2-173 (247)
454 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.4 4.5E-12 9.7E-17 129.6 17.0 114 8-142 5-122 (182)
455 COG2229 Predicted GTPase [Gene 99.4 4.5E-12 9.7E-17 122.8 15.8 155 648-817 7-163 (187)
456 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 5.2E-12 1.1E-16 133.3 17.9 113 9-142 14-130 (232)
457 smart00174 RHO Rho (Ras homolo 99.4 2E-12 4.2E-17 131.8 14.3 111 11-143 1-116 (174)
458 cd04147 Ras_dva Ras-dva subfam 99.4 1.2E-12 2.6E-17 136.3 13.0 155 654-843 2-163 (198)
459 PRK11058 GTPase HflX; Provisio 99.4 8.8E-13 1.9E-17 151.4 13.0 151 653-843 199-362 (426)
460 smart00174 RHO Rho (Ras homolo 99.4 1.3E-12 2.9E-17 133.0 12.9 154 655-841 2-170 (174)
461 smart00838 EFG_C Elongation fa 99.4 1.8E-13 3.9E-18 120.8 5.2 72 591-662 1-72 (85)
462 cd00882 Ras_like_GTPase Ras-li 99.4 1.6E-12 3.5E-17 128.1 12.6 112 13-144 1-117 (157)
463 cd04125 RabA_like RabA-like su 99.4 1.9E-12 4.2E-17 133.7 13.7 155 653-841 2-160 (188)
464 cd04132 Rho4_like Rho4-like su 99.4 1.2E-12 2.6E-17 135.1 12.1 157 653-842 2-166 (187)
465 cd04131 Rnd Rnd subfamily. Th 99.4 4.6E-12 9.9E-17 129.3 16.0 112 10-142 3-118 (178)
466 PLN03108 Rab family protein; P 99.4 2E-12 4.4E-17 135.8 13.7 156 652-841 7-166 (210)
467 cd04130 Wrch_1 Wrch-1 subfamil 99.4 4.8E-12 1E-16 128.8 16.1 111 10-142 2-117 (173)
468 KOG0394|consensus 99.4 5.5E-13 1.2E-17 127.8 8.3 156 652-840 10-175 (210)
469 cd04135 Tc10 TC10 subfamily. 99.4 1.5E-12 3.2E-17 132.7 12.1 154 654-840 3-171 (174)
470 cd01892 Miro2 Miro2 subfamily. 99.4 7.8E-13 1.7E-17 134.0 9.8 160 651-842 4-165 (169)
471 cd04126 Rab20 Rab20 subfamily. 99.4 2.1E-12 4.5E-17 135.6 12.9 156 654-840 3-187 (220)
472 cd04146 RERG_RasL11_like RERG/ 99.4 1.3E-12 2.8E-17 131.9 11.0 154 654-841 2-162 (165)
473 cd01876 YihA_EngB The YihA (En 99.4 5.3E-12 1.2E-16 127.4 15.4 155 654-841 2-169 (170)
474 PF00679 EFG_C: Elongation fac 99.4 3.1E-13 6.7E-18 120.3 5.5 73 590-662 1-74 (89)
475 cd04105 SR_beta Signal recogni 99.4 2.6E-12 5.6E-17 133.9 13.3 117 9-146 1-126 (203)
476 KOG0073|consensus 99.4 7.9E-12 1.7E-16 117.6 14.9 111 9-144 17-132 (185)
477 cd04148 RGK RGK subfamily. Th 99.4 3.3E-12 7.1E-17 135.1 14.0 110 10-142 2-119 (221)
478 COG2262 HflX GTPases [General 99.4 1.5E-12 3.3E-17 141.6 11.6 151 652-843 193-356 (411)
479 cd04139 RalA_RalB RalA/RalB su 99.4 3.5E-12 7.6E-17 128.4 13.3 154 653-841 2-160 (164)
480 cd04111 Rab39 Rab39 subfamily. 99.4 3.4E-12 7.4E-17 134.0 13.6 156 652-842 3-165 (211)
481 KOG0394|consensus 99.4 4.8E-12 1E-16 121.4 13.1 118 6-143 7-132 (210)
482 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.4 2E-12 4.4E-17 132.1 11.5 156 652-840 6-177 (182)
483 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 2.7E-12 5.9E-17 135.5 12.6 158 651-840 13-185 (232)
484 cd03710 BipA_TypA_C BipA_TypA_ 99.4 6.5E-13 1.4E-17 115.2 6.5 70 593-662 1-71 (79)
485 KOG0078|consensus 99.4 6.1E-12 1.3E-16 124.9 14.1 120 4-143 8-131 (207)
486 COG0370 FeoB Fe2+ transport sy 99.4 4E-12 8.6E-17 147.0 14.8 109 10-142 5-121 (653)
487 KOG0080|consensus 99.4 1.4E-12 3E-17 121.5 8.6 149 644-818 7-160 (209)
488 cd00157 Rho Rho (Ras homology) 99.4 3.3E-12 7.1E-17 129.6 12.3 156 654-840 3-170 (171)
489 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 1.2E-11 2.5E-16 130.0 16.6 114 9-143 2-119 (222)
490 cd04131 Rnd Rnd subfamily. Th 99.4 2.5E-12 5.3E-17 131.2 11.2 156 653-840 3-173 (178)
491 cd03711 Tet_C Tet_C: C-terminu 99.4 5.7E-13 1.2E-17 115.4 5.5 69 593-661 1-69 (78)
492 cd04097 mtEFG1_C mtEFG1_C: C-t 99.4 5.7E-13 1.2E-17 115.4 5.5 69 593-661 1-69 (78)
493 PTZ00132 GTP-binding nuclear p 99.4 1.6E-11 3.4E-16 129.8 17.5 116 7-142 8-126 (215)
494 KOG0098|consensus 99.4 3.8E-12 8.2E-17 122.3 11.3 141 656-818 11-154 (216)
495 cd00876 Ras Ras family. The R 99.4 5.3E-12 1.2E-16 126.4 13.0 150 654-840 2-158 (160)
496 cd01870 RhoA_like RhoA-like su 99.4 5.1E-12 1.1E-16 128.9 12.8 157 653-840 3-172 (175)
497 cd04137 RheB Rheb (Ras Homolog 99.4 5.6E-12 1.2E-16 129.3 13.1 154 652-842 2-162 (180)
498 KOG0098|consensus 99.4 4.1E-12 8.9E-17 122.1 11.0 116 7-142 5-124 (216)
499 cd01876 YihA_EngB The YihA (En 99.4 2E-11 4.4E-16 123.2 17.0 109 11-142 2-123 (170)
500 PF00025 Arf: ADP-ribosylation 99.4 3.7E-12 8.1E-17 129.6 11.4 156 649-840 12-173 (175)
No 1
>KOG0465|consensus
Probab=100.00 E-value=1.9e-137 Score=1128.72 Aligned_cols=653 Identities=43% Similarity=0.753 Sum_probs=628.3
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+++|||+|++|.|+|||||+++++|++|.+.+.|+++.+.+.+||++.|++|||||++++.++.|. ++.||+||
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~----~~~iNiID 110 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR----DYRINIID 110 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec----cceeEEec
Confidence 56789999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||.||.-++++|+++.|+|++|+|++.|+++||..+|+|++++++|.|.|+||||+.++++.+++++++.+|..+++.
T Consensus 111 TPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~ 190 (721)
T KOG0465|consen 111 TPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAV 190 (721)
T ss_pred CCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCceeeEEecccceeeeecCCC---eeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWKENS---IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIK 239 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~ 239 (1021)
+|+|++.++.|.|++|++.+++++|+++. ....++|++..+.+.+.|++|+|.+++.||+|.|.||++ .++.+++.
T Consensus 191 vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~ 270 (721)
T KOG0465|consen 191 VQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLK 270 (721)
T ss_pred eEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHH
Confidence 99999999999999999999999999766 556899999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC-----Cc-ccccc----CCCceEEEEEEEeecC
Q psy5021 240 NSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN-----ND-YNINL----NSNKFVSLVFKIFHDP 309 (1021)
Q Consensus 240 ~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~-----~~-~~~~~----~~~p~~~~V~k~~~~~ 309 (1021)
.++++++..+.++|||||||++|.||++|||++++|||+|.+.+... ++ +++.+ .+.||++++||+..++
T Consensus 271 ~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~ 350 (721)
T KOG0465|consen 271 AAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEGR 350 (721)
T ss_pred HHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeecC
Confidence 99999999999999999999999999999999999999999876543 11 12222 3349999999999999
Q ss_pred CCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccC-Ccccccc
Q psy5021 310 FLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSL-SENIQLE 388 (1021)
Q Consensus 310 ~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~-~~~~~~~ 388 (1021)
+ |.+.|+|||+|+|++||.+||.++++++|+.+|++||++..++|+++.|||||++.|+ ++.+|||+.+. .....+.
T Consensus 351 f-GqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGi-dcasGDTftd~~~~~~~m~ 428 (721)
T KOG0465|consen 351 F-GQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGI-DCASGDTFTDKQNLALSME 428 (721)
T ss_pred c-cceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeeecc-ccccCceeccCccccceee
Confidence 9 9999999999999999999999999999999999999999999999999999999999 89999999997 5567789
Q ss_pred CCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCe
Q psy5021 389 NIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQ 468 (1021)
Q Consensus 389 ~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~ 468 (1021)
.+.+|+||+++||+|.+.+|.++|.+||.++.+|||++++..|.|+||++|+|||||||||..+||++|||+++.+++|+
T Consensus 429 si~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy~~~~~~Gkp~ 508 (721)
T KOG0465|consen 429 SIHIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREYKVDAELGKPQ 508 (721)
T ss_pred eeecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHhCCccccCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCccccc
Q psy5021 469 VSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGY 548 (1021)
Q Consensus 469 V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~ 548 (1021)
|+|||||+++++.++.|+||+||.+|||++.-.++|++...+..++|.+++.|+++|++|++|+++||.+++++|||.|+
T Consensus 509 VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P~~f~pa~ekg~~e~~~~G~L~gh 588 (721)
T KOG0465|consen 509 VAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVPKQFIPAVEKGFEEIVAKGPLIGH 588 (721)
T ss_pred eeehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEecccCCCCchhHHHHHHHHHHHHHhcCCccCC
Confidence 99999999999999999999999999999999999998544456789999999999999999999999999999999999
Q ss_pred ceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecC
Q psy5021 549 PVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHE 628 (1021)
Q Consensus 549 pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~ 628 (1021)
|+.|+++.|.||.+|.+||++.+|+.|++-|+++|+.+|+|+||||||.|||++|+|++|.|+++|++|+|.|.+.+..+
T Consensus 589 pl~~~r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~~d~~~ 668 (721)
T KOG0465|consen 589 PLSNLRIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITGIDSSE 668 (721)
T ss_pred cccceEEEEecCCcCcccccHHHHHHHHHHHHHHHHHhCCcceeecceeeEEecchhhhhhhhhhhhhcccEEecccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 629 NFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 629 ~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+.++|+|.+|+.+||+|.++||++|.|.+-|++.
T Consensus 669 ~~~ti~A~VPL~~mfgYss~LRslTqGkgeftME 702 (721)
T KOG0465|consen 669 DYKTIKAEVPLNEMFGYSSELRSLTQGKGEFTME 702 (721)
T ss_pred ceEEEEecccHHHHhhhhhhhhhhhcCcceEEEe
Confidence 9999999999999999999999999999988874
No 2
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-133 Score=1179.32 Aligned_cols=653 Identities=49% Similarity=0.848 Sum_probs=628.2
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCc-eeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFK-YMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~-~~i~li 82 (1021)
..+++|||+|+||+|||||||+++|++++|.+++.|+++.|++++||+++|++|||||+++++++.|+ + ++||||
T Consensus 6 ~~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~----~~~~iNlI 81 (697)
T COG0480 6 PLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWK----GDYRINLI 81 (697)
T ss_pred ccccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEc----CceEEEEe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999 6 999999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCcee
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVL 162 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~ 162 (1021)
|||||+||..++.++++++|+||+|+||.+|+++||+.+|+++.++++|+++|+||||+.++++..++++++++|+.++.
T Consensus 82 DTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~ 161 (697)
T COG0480 82 DTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPV 161 (697)
T ss_pred CCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecccCCceeeEEecccceeeeecC-CCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHHH
Q psy5021 163 PINFNIGIEENYEGIVDIINKKSFFWKE-NSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKN 240 (1021)
Q Consensus 163 ~~~~p~~~~~~~~g~id~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~~ 240 (1021)
++|+|++..+.|.|++|++.++++.|+. ..+...++|.+..+...++|..++|.+++.|++++|+||++ +++.+++.+
T Consensus 162 ~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~ 241 (697)
T COG0480 162 PVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKK 241 (697)
T ss_pred eeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHH
Confidence 9999999999999999999999999994 33555888988888889999999999999999999999999 999999999
Q ss_pred HHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC---Cc---ccc--cc-CCCceEEEEEEEeecCCC
Q psy5021 241 SIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN---ND---YNI--NL-NSNKFVSLVFKIFHDPFL 311 (1021)
Q Consensus 241 ~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~---~~---~~~--~~-~~~p~~~~V~k~~~~~~~ 311 (1021)
.+++.+..+.++|++|+||.+|.|++.|||++++++|+|.+.+... .+ +.. .. +++|++++|||+..||+.
T Consensus 242 ~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~ 321 (697)
T COG0480 242 ALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFV 321 (697)
T ss_pred HHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCC
Confidence 9999999999999999999999999999999999999999876433 11 111 11 579999999999999999
Q ss_pred ceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCCc
Q psy5021 312 GSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIE 391 (1021)
Q Consensus 312 g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~~ 391 (1021)
|+++|+|||||+|++||.++|.+.++++++.+|+.++|+++.++++++||||+++.||+++.+|||||+...+..++++.
T Consensus 322 g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl~~~~~~v~~~~~~ 401 (697)
T COG0480 322 GKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLCDENKPVILESME 401 (697)
T ss_pred CeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEcccccccCCeeecCCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887667889999
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEE
Q psy5021 392 TPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSY 471 (1021)
Q Consensus 392 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~y 471 (1021)
+|+||++++|+|++++|++||.++|++|++|||+++++.|+||||++|+|||||||||+++||+++||+++.+++|+|+|
T Consensus 402 ~pePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~~Vev~~~~PqV~Y 481 (697)
T COG0480 402 FPEPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREFGVEVEVGKPQVAY 481 (697)
T ss_pred CCCceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhcCceEEecCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceE
Q psy5021 472 KESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVI 551 (1021)
Q Consensus 472 rEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~ 551 (1021)
|||+.+.+...++|+||+||++||+++.+++||++ +|.++.|.+++.+|.+|++|++++++||++++++|||+||||+
T Consensus 482 rETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~--~~~~~~f~~~i~~g~~P~~yi~~ve~G~~~a~~~GpLag~pv~ 559 (697)
T COG0480 482 RETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLE--DGSGFEFVDKIVGGVVPKEYIPAVEKGFREALKSGPLAGYPVV 559 (697)
T ss_pred EEeecccccceeeeeeccCCCCcccEEEEEEEeCC--CCcceEEEeecccCcCchhhhHHHHHHHHHHHhcCCCCCCceE
Confidence 99999998899999999999999999999999998 7889999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecC--C
Q psy5021 552 KIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHE--N 629 (1021)
Q Consensus 552 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~ 629 (1021)
||+|+|.|+++|++||++++|+.|+++||++|+.+|+|+||||||+|||++|++|+|+|+++|++|||+|++++..+ +
T Consensus 560 dvkv~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~~~~~~ 639 (697)
T COG0480 560 DVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQRPGGG 639 (697)
T ss_pred eeEEEEEcCccccCCCCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEeceeeccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999984 4
Q ss_pred eEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 630 FKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 630 ~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+..|+|++|++|||||+++||+.|+|.+.+++.
T Consensus 640 ~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~ 672 (697)
T COG0480 640 LDVIKAEVPLAEMFGYATDLRSATQGRASFSME 672 (697)
T ss_pred eEEEEEEechHHhccchhhhHhhcCCceeEEEE
Confidence 589999999999999999999999999998875
No 3
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=9.3e-122 Score=1116.18 Aligned_cols=656 Identities=51% Similarity=0.872 Sum_probs=624.0
Q ss_pred CCC-CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeE
Q psy5021 1 MKN-KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79 (1021)
Q Consensus 1 m~~-~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i 79 (1021)
|.+ +.++||||+|+||+|||||||+++|++.+|.+...|.++++++++|+.++|++||+|++++..++.|+ ++++
T Consensus 2 ~~~~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~----~~~~ 77 (693)
T PRK00007 2 ARETPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK----DHRI 77 (693)
T ss_pred CCcCcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC----CeEE
Confidence 445 68899999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
+|||||||.+|..++.++++.+|++|+|||+.+|++.||+.+|+++.+.++|+++|+||||+.++++.+.++++++.++.
T Consensus 78 ~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~ 157 (693)
T PRK00007 78 NIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGA 157 (693)
T ss_pred EEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCC----CeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCC
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKEN----SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYS 234 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~ 234 (1021)
.+.+.++|+.....|.|++|++.+..+.|... .+...++|....+.+.+++++|+|.+++.||++||+||++ +++
T Consensus 158 ~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~ 237 (693)
T PRK00007 158 NPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELT 237 (693)
T ss_pred CeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCC
Confidence 99999999999999999999999999999531 2566778888888899999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC----Cc----ccccc-CCCceEEEEEEE
Q psy5021 235 INDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN----ND----YNINL-NSNKFVSLVFKI 305 (1021)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~----~~----~~~~~-~~~p~~~~V~k~ 305 (1021)
.+++.+.+++++..+.++||||+||+++.|+++|||+|++++|+|.+++... +. ....| +++|++++|||+
T Consensus 238 ~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~ 317 (693)
T PRK00007 238 EEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKI 317 (693)
T ss_pred HHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEe
Confidence 9999999999999999999999999999999999999999999998765321 01 11234 789999999999
Q ss_pred eecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccc
Q psy5021 306 FHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENI 385 (1021)
Q Consensus 306 ~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~ 385 (1021)
.+|++.|+++|+|||||+|++||.|++.+.++.+++.+|+.++|+++.+++++.|||||++.|++++.+||||++...+.
T Consensus 318 ~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdtL~~~~~~~ 397 (693)
T PRK00007 318 MTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLCDEKNPI 397 (693)
T ss_pred eecCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeCCccCCcCCEeeCCCCcc
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999877777
Q ss_pred cccCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEe
Q psy5021 386 QLENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKIS 465 (1021)
Q Consensus 386 ~~~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~ 465 (1021)
.++++.+|+|+++++|+|.++.|.+||.+||++|++|||||+|.++++|||++|+|||||||||+++||+++|+++++++
T Consensus 398 ~l~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~~vev~~s 477 (693)
T PRK00007 398 ILESMEFPEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFKVEANVG 477 (693)
T ss_pred ccCCCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHhCCeeEec
Confidence 78888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcc
Q psy5021 466 KPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVV 545 (1021)
Q Consensus 466 ~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl 545 (1021)
+|+|+|||||.++++..++|++|+||++||++++++++|++ ++.++.|.+++.++.+|++|++||++||++|+++|||
T Consensus 478 ~p~V~yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~--~~~~~~f~~~i~~g~~~~~~~~av~~G~~~a~~~GpL 555 (693)
T PRK00007 478 KPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNE--PGKGYEFVNKIVGGVIPKEYIPAVDKGIQEAMESGVL 555 (693)
T ss_pred CCEEEEeecccCccccCcccccccCCCCceEEEEEEEEeCC--CCCCcEEeecccCCcCcHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999998888999999999999999999999998 7899999999999999999999999999999999999
Q ss_pred cccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeee
Q psy5021 546 LGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTII 625 (1021)
Q Consensus 546 ~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~ 625 (1021)
|||||+||+|+|+|+.+|++|+++++|+.|+++||++|+++|+|+||||||+|+|+||++|+|+||++|++|||+|.+++
T Consensus 556 ~g~pv~~v~v~l~d~~~~~~ds~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~ 635 (693)
T PRK00007 556 AGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGME 635 (693)
T ss_pred CCCceeeEEEEEEecccCCCCCcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHHHHHHhCCCeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCCeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 626 DHENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 626 ~~~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+.++++.|+|.+|++|+++|.++||++|.|.+.+...
T Consensus 636 ~~~~~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~ 672 (693)
T PRK00007 636 DRGGAKVIRAEVPLSEMFGYATDLRSMTQGRATYSME 672 (693)
T ss_pred ccCCcEEEEEEcCHHHhhccHHHHHhhcCCceEEEEE
Confidence 8778899999999999999999999999999877654
No 4
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=9.5e-121 Score=1108.72 Aligned_cols=653 Identities=50% Similarity=0.857 Sum_probs=623.5
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.++||||+|+||+|||||||+++|++.+|.+.+.|.++++++++|+.++|++||+|++++..++.|+ +++++|||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~----~~~i~liD 79 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK----GHRINIID 79 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC----CEEEEEEc
Confidence 56889999999999999999999999999999888999999999999999999999999999999998 99999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||.+|..++.++++.+|++|+|||+.+|++.|++.+|+++...++|+|+|+||||+.++++.+.++++++.++..+.+
T Consensus 80 TPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~ 159 (691)
T PRK12739 80 TPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVP 159 (691)
T ss_pred CCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCceeeEEecccceeeeecCC----CeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWKEN----SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDI 238 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~ 238 (1021)
.++|+.....|.|++|+++++.+.|... .+...++|.+..+++.+++++|+|.+++.||+++|+||++ +++.+++
T Consensus 160 ~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l 239 (691)
T PRK12739 160 IQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEI 239 (691)
T ss_pred EEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHH
Confidence 9999999999999999999999999653 2566788888899999999999999999999999999999 9999999
Q ss_pred HHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCC-----c--ccccc-CCCceEEEEEEEeecCC
Q psy5021 239 KNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNN-----D--YNINL-NSNKFVSLVFKIFHDPF 310 (1021)
Q Consensus 239 ~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~-----~--~~~~~-~~~p~~~~V~k~~~~~~ 310 (1021)
.+.+++++..+.++|||++||.++.|++.|||+|++++|+|.+++.... . ....| +++|++++|||+.+|++
T Consensus 240 ~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~ 319 (691)
T PRK12739 240 KAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTDPF 319 (691)
T ss_pred HHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeCCC
Confidence 9999999999999999999999999999999999999999987654321 1 12344 78899999999999999
Q ss_pred CceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCC
Q psy5021 311 LGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENI 390 (1021)
Q Consensus 311 ~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~ 390 (1021)
+|+++|+|||||+|++||.|++.+.++++++.+||.++|+++.++++++||||++|.|++++.+||||++......++++
T Consensus 320 ~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~l~~~ 399 (691)
T PRK12739 320 VGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDTTTGDTLCDEKAPIILESM 399 (691)
T ss_pred CCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeCCCcccCCCEEeCCCCccccCCC
Confidence 99999999999999999999999988899999999999999999999999999999999999999999988777778888
Q ss_pred cCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEE
Q psy5021 391 ETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVS 470 (1021)
Q Consensus 391 ~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~ 470 (1021)
.+|+|+++++|+|.+++|+++|.+||++|+++||+|++.++++|||++|+||||||||+|++||+++|++++++|+|+|+
T Consensus 400 ~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~vev~~s~p~V~ 479 (691)
T PRK12739 400 EFPEPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFKVEANVGAPQVA 479 (691)
T ss_pred CCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHhCCeeEecCCEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccce
Q psy5021 471 YKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPV 550 (1021)
Q Consensus 471 yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv 550 (1021)
|||||.+.++..++|++|+||++||++++++++|++ +|+++.|.+++.++.+|++|++||++||+||+++||||||||
T Consensus 480 yrEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~--~~~~~~~~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv 557 (691)
T PRK12739 480 YRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNE--EGKGFEFVNKIVGGVIPKEYIPAVEKGLEEAMKNGVLAGYPM 557 (691)
T ss_pred EeeccCCcccccceeccccCCCCceeEEEEEEEECC--CCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCce
Confidence 999999998888999999999999999999999998 789999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCe
Q psy5021 551 IKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENF 630 (1021)
Q Consensus 551 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~ 630 (1021)
+||+|+|+|+.+|++++++++|+.|+++||++|+++|+|+||||||+|||+||++++|+||++|++|||+|.+++..+++
T Consensus 558 ~~v~v~l~d~~~h~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~~ 637 (691)
T PRK12739 558 VDVKATLYDGSYHDVDSSELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGGA 637 (691)
T ss_pred eeEEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCeEECccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred EEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 631 KIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 631 ~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
..|+|.+|++|+++|.++||++|+|.+.+...
T Consensus 638 ~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~ 669 (691)
T PRK12739 638 QIVKAFVPLSEMFGYATDLRSATQGRATFSME 669 (691)
T ss_pred EEEEEEeCHHHhhccHHHHHhhccCceEEEEE
Confidence 99999999999999999999999999877653
No 5
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=1.6e-119 Score=1099.24 Aligned_cols=655 Identities=49% Similarity=0.847 Sum_probs=622.9
Q ss_pred CCC-CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeE
Q psy5021 1 MKN-KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79 (1021)
Q Consensus 1 m~~-~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i 79 (1021)
|.+ ++++||||+|+||+|||||||+++|++.++.+.+.|++++|++++|+.+.|++||+|+++...++.|+ ++++
T Consensus 2 ~~~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~----~~~i 77 (689)
T TIGR00484 2 ARTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK----GHRI 77 (689)
T ss_pred CCcCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC----CeEE
Confidence 455 88999999999999999999999999999999889999999999999999999999999999999999 9999
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
+|||||||.+|..++.++++.+|++|+|+|+.+|++.+++.+|+++...++|+++|+||+|+.++++.+.++++++.++.
T Consensus 78 ~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~ 157 (689)
T TIGR00484 78 NIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGA 157 (689)
T ss_pred EEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCC---eeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCH
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENS---IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSI 235 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~ 235 (1021)
.+.+.++|+....+|.|++|++.++.++|+++. +...++|++..+.+.++|++|+|++++.||++||+||++ +++.
T Consensus 158 ~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~ 237 (689)
T TIGR00484 158 NAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTI 237 (689)
T ss_pred CceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCH
Confidence 999999999999999999999999999997643 567788999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC----Cc---ccccc-CCCceEEEEEEEee
Q psy5021 236 NDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN----ND---YNINL-NSNKFVSLVFKIFH 307 (1021)
Q Consensus 236 ~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~----~~---~~~~~-~~~p~~~~V~k~~~ 307 (1021)
+++.++++++++.+.++|||++||.+|.|+++|||+|+.++|+|.+++... .. ....| +++|++++|||+.+
T Consensus 238 ~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~ 317 (689)
T TIGR00484 238 EEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVAT 317 (689)
T ss_pred HHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeee
Confidence 999999999999999999999999999999999999999999998754321 00 11233 68999999999999
Q ss_pred cCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccc
Q psy5021 308 DPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQL 387 (1021)
Q Consensus 308 ~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~ 387 (1021)
|++.|+++|+|||||+|+.||.|++...++.+++.+++.++|+++.++++++|||||++.|++++.+||||++......+
T Consensus 318 d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~ 397 (689)
T TIGR00484 318 DPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLCDPKIDVIL 397 (689)
T ss_pred cCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCCCCCCCCCEEeCCCCcccc
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999987777778
Q ss_pred cCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCC
Q psy5021 388 ENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKP 467 (1021)
Q Consensus 388 ~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p 467 (1021)
+++.+|+|+++++|+|.++.|.+||.+||++|+++||+|++.++++|||++|+|||||||||+++||+++|++++++++|
T Consensus 398 ~~~~~~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~~vev~~~~p 477 (689)
T TIGR00484 398 ERMEFPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANVGAP 477 (689)
T ss_pred CCCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHhCCeeEecCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccc
Q psy5021 468 QVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLG 547 (1021)
Q Consensus 468 ~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g 547 (1021)
+|+|||||.+.++..++|++|++|++|||+|+++++|++ + .|+.|.+++.+|.+|++|++||++||+||+++|||||
T Consensus 478 ~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~--~-~g~~~~~~i~~g~~~~~~~~av~~g~~~a~~~GpL~g 554 (689)
T TIGR00484 478 QVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLE--P-KGYEFVNEIKGGVIPREYIPAVDKGLQEAMESGPLAG 554 (689)
T ss_pred EEEEeecccCccccccccccccCCCCceEEEEEEEEECC--C-CCcEEEEeccCCcCCHHHHHHHHHHHHHHHhcCCcCC
Confidence 999999999998888999999999999999999999997 4 4899999999999999999999999999999999999
Q ss_pred cceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeec
Q psy5021 548 YPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDH 627 (1021)
Q Consensus 548 ~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~ 627 (1021)
|||+||+|+|+++.+|+++|++++|+.|+++||++|+++|+|+||||||+|||+||++++|+|+++|++|||+|.+++..
T Consensus 555 ~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~ 634 (689)
T TIGR00484 555 YPVVDIKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEAR 634 (689)
T ss_pred CceeeEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCCeEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 628 ENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 628 ~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
++++.|+|++|++|+++|.++||++|+|.+.+...
T Consensus 635 ~~~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~ 669 (689)
T TIGR00484 635 GNVQKIKAEVPLSEMFGYATDLRSFTQGRGTYSME 669 (689)
T ss_pred CCcEEEEEEeCHHHHhChHHHHHHhcCCceEEEEE
Confidence 78899999999999999999999999999877653
No 6
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=7.4e-117 Score=1080.11 Aligned_cols=653 Identities=45% Similarity=0.777 Sum_probs=620.8
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+++|||+|+||+|||||||+++|++.+|.+.+.|.++.|++.+|+.+.|++||+|+.++..++.|. ++.++|||
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~----~~~i~liD 79 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD----NHRINLID 79 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC----CEEEEEEE
Confidence 56789999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||.+|..++..+++.+|++++|+|++++++.+++.+|+++...++|+++|+||+|+.++++.++++++++.|+..+.+
T Consensus 80 tPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 159 (687)
T PRK13351 80 TPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLP 159 (687)
T ss_pred CCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCceeeEEecccceeeeecCC----CeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWKEN----SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDI 238 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~ 238 (1021)
+|+|++.+..|.|++|++.++.+.|... .+...++|+.+.+.+.+++++++|.+++.||+++|+||++ .++.+++
T Consensus 160 ~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l 239 (687)
T PRK13351 160 LQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQL 239 (687)
T ss_pred EEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHH
Confidence 9999999999999999999999999652 2566788989999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCC------cccccc-CCCceEEEEEEEeecCCC
Q psy5021 239 KNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNN------DYNINL-NSNKFVSLVFKIFHDPFL 311 (1021)
Q Consensus 239 ~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~------~~~~~~-~~~p~~~~V~k~~~~~~~ 311 (1021)
...+++++..+.++|+|||||++|.|++.|||+|++++|+|.+.+.... .....| +++|++++|||+.++++.
T Consensus 240 ~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~ 319 (687)
T PRK13351 240 RAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYA 319 (687)
T ss_pred HHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEeeecCCC
Confidence 9999999999999999999999999999999999999999986543221 012234 678999999999999999
Q ss_pred ceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCCc
Q psy5021 312 GSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIE 391 (1021)
Q Consensus 312 g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~~ 391 (1021)
|+++|+|||||+|++||.|++.+.++.+++.+|+.++|.++.++++|.||||+++.|++++.+||||++......++++.
T Consensus 320 G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~~ 399 (687)
T PRK13351 320 GKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKELETGDTLHDSADPVLLELLT 399 (687)
T ss_pred ceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEECcccCccCCEEeCCCCccccCCCC
Confidence 99999999999999999999999888999999999999999999999999999999999999999999877666777888
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEE
Q psy5021 392 TPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSY 471 (1021)
Q Consensus 392 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~y 471 (1021)
+|+|+++++|+|.+++|.++|.+||++|++|||+|++++++||||++|+||||||||++++||+++|++++++++|+|+|
T Consensus 400 ~~~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~~vev~~~~p~V~y 479 (687)
T PRK13351 400 FPEPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFKLEVNTGKPQVAY 479 (687)
T ss_pred CCCccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCCceEecCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceE
Q psy5021 472 KESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVI 551 (1021)
Q Consensus 472 rEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~ 551 (1021)
||||++.++..++|+++++|++||++++++++|++ +++|+.|.+.+.++.+|++|++||++||++|+++||||||||+
T Consensus 480 ~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~--~~~g~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~GpL~~~pv~ 557 (687)
T PRK13351 480 RETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLE--RGAGFIFVSKVVGGAIPEELIPAVEKGIREALASGPLAGYPVT 557 (687)
T ss_pred EeeccccccccceeeeccCCCceEEEEEEEEEECC--CCCCcEEeecccCCcCCHHHHHHHHHHHHHHHhcCCCCCCcee
Confidence 99999998888899999999999999999999998 7889999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeE
Q psy5021 552 KIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFK 631 (1021)
Q Consensus 552 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~ 631 (1021)
||+|+|+|+.+|+++|++++|+.|+++||++|+++|+|+||||||+|||+||++++|+||++|++|||+|.+++..+++.
T Consensus 558 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~ 637 (687)
T PRK13351 558 DLRVTVLDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDGE 637 (687)
T ss_pred eEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEEeceecCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876655
Q ss_pred E-EEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 632 I-INSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 632 ~-i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
. |+|.+|++|+++|.++||++|+|.+.+...
T Consensus 638 ~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~~~ 669 (687)
T PRK13351 638 VLVKAEAPLAELFGYATRLRSMTKGRGSFTME 669 (687)
T ss_pred EEEEEEECHHHhhChHHHHHhhcCCceEEEEE
Confidence 5 999999999999999999999999877653
No 7
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=1.3e-110 Score=1024.50 Aligned_cols=643 Identities=46% Similarity=0.804 Sum_probs=610.4
Q ss_pred EeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCcHHH
Q psy5021 14 IAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIE 93 (1021)
Q Consensus 14 iG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~ 93 (1021)
+||+|||||||+++|++.+|.+.+.|+++++.+++|+.+.|++||+|+..+..++.|+ ++.+++||||||.+|..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~----~~~i~liDtPG~~~~~~~ 76 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK----GHKINLIDTPGHVDFTGE 76 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC----CEEEEEEECCCcHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeeeeecccCCc
Q psy5021 94 VERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEEN 173 (1021)
Q Consensus 94 ~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~ 173 (1021)
+.++++.+|++|+|+|++.++..++..+|+.+...++|+++|+||+|+..++..+.++++++.++..+++.++|+..+..
T Consensus 77 ~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~ 156 (668)
T PRK12740 77 VERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDD 156 (668)
T ss_pred HHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEecccceeeeecCCC-eeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHHHHHHHHHhcCce
Q psy5021 174 YEGIVDIINKKSFFWKENS-IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSIRKLVLKNKI 251 (1021)
Q Consensus 174 ~~g~id~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~~~~~~~~~~~~~ 251 (1021)
|.|++|++.++.+.|+.+. +...++|+...+++.+++++++|.+++.||+++++||++ .++.++++..++++++.+.+
T Consensus 157 ~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~ 236 (668)
T PRK12740 157 FTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEI 236 (668)
T ss_pred ceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCE
Confidence 9999999999999998433 566778888888899999999999999999999999999 99999999999999999999
Q ss_pred eEEEeccccCcccHHHHHHHHHHhCCCCccccccCC-----cccccc-CCCceEEEEEEEeecCCCceEEEEEEEeeEEe
Q psy5021 252 IPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNN-----DYNINL-NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIK 325 (1021)
Q Consensus 252 ~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~-----~~~~~~-~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~ 325 (1021)
+|+|++||++|.|++.||++|++++|+|.+.+.... .....| +++|++++|||++++++.|+++|+|||||+|+
T Consensus 237 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~ 316 (668)
T PRK12740 237 VPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLK 316 (668)
T ss_pred EEEEeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEc
Confidence 999999999999999999999999999976442210 011234 67899999999999999999999999999999
Q ss_pred cCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCCcCCCCeEEEEEEeCC
Q psy5021 326 VGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIF 405 (1021)
Q Consensus 326 ~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~~~~~Pv~~~~iep~~ 405 (1021)
+||.|++...++.+++.+++.++|++..++++|.||||+++.|++.+.+||||++......++++.+++|+++++|+|.+
T Consensus 317 ~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~~~~~~~~P~~~~~i~p~~ 396 (668)
T PRK12740 317 KGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKGDPILLEPMEFPEPVISLAIEPKD 396 (668)
T ss_pred CCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEeCCCCccccCCCCCCCcceEEEEEECC
Confidence 99999999888889999999999999999999999999999999999999999987767778888999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEEEeecccceeeeeEE
Q psy5021 406 KNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIVTQEGKY 485 (1021)
Q Consensus 406 ~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~ 485 (1021)
++|.++|.++|++|+++||+|++..+++|||++|+|+|||||||+++||+++|++++.+++|+|+|||||.++++..++|
T Consensus 397 ~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~~~~v~~~~p~V~yrEti~~~~~~~~~~ 476 (668)
T PRK12740 397 KGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPPQVPYRETIRKKAEGHGRH 476 (668)
T ss_pred cchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCceeEecCCeeEEeeccCCCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred EecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeeccC
Q psy5021 486 IKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSV 565 (1021)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~ 565 (1021)
++++||++||++|+++++|++ +++|+.|.+++.++.+|++|++||++||++|+++||||||||+||+|+|+++.+|++
T Consensus 477 ~~~~~~~~~~~~v~l~~ep~~--~~~~~~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~~~~~~~~ 554 (668)
T PRK12740 477 KKQSGGHGQFGDVWLEVEPLP--RGEGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGYPVVDVKVTLTDGSYHSV 554 (668)
T ss_pred ccccCCCCceEEEEEEEEECC--CCCceEEeecccCCCccHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccccC
Confidence 999999999999999999998 788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEEEEEcchhhhccC
Q psy5021 566 DSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGY 645 (1021)
Q Consensus 566 ~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~~~ 645 (1021)
++++++|+.|+++||++|+++|+|+||||||+|||++|++++|+|+++|++|||+|.+++..++.+.|+|++|++|+++|
T Consensus 555 ~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~g~ 634 (668)
T PRK12740 555 DSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGGGDVVRAEVPLAEMFGY 634 (668)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCCCEEEEEEcCHHHhhch
Confidence 99999999999999999999999999999999999999999999999999999999999887666999999999999999
Q ss_pred Ccccccceeeeeeeeec
Q psy5021 646 STDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 646 ~~~l~~~t~g~~g~~~~ 662 (1021)
.++||++|.|.+.+...
T Consensus 635 ~~~Lr~~T~G~a~~~~~ 651 (668)
T PRK12740 635 ATDLRSLTQGRGSFSME 651 (668)
T ss_pred HHHHHHhcCCeEEEEEE
Confidence 99999999999877653
No 8
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=4.4e-108 Score=1011.32 Aligned_cols=644 Identities=24% Similarity=0.342 Sum_probs=552.1
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-----------
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV----------- 72 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~----------- 72 (1021)
+.++||||||+||+|||||||+++|++.+|.+... ...+++++|++++|++||+|++++.+++.|..
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGE 92 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccc--cCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccc
Confidence 67899999999999999999999999999988763 44557779999999999999999999999962
Q ss_pred -ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC-------C-
Q psy5021 73 -NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI-------G- 143 (1021)
Q Consensus 73 -~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~-------~- 143 (1021)
++.++.+||||||||.||..++.++++.+|+||+||||.+|++.||+.+|+++...++|+++|+||||++ .
T Consensus 93 ~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~ 172 (843)
T PLN00116 93 RDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 172 (843)
T ss_pred cCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHH
Confidence 2347899999999999999999999999999999999999999999999999999999999999999998 3
Q ss_pred ---CCHHHHHHHHHHH---hCCcee-eeee-ecccC----------------------CceeeEEecccceee---eecC
Q psy5021 144 ---ANYNNCIIDIKKK---FNCIVL-PINF-NIGIE----------------------ENYEGIVDIINKKSF---FWKE 190 (1021)
Q Consensus 144 ---~~~~~~~~~i~~~---l~~~~~-~~~~-p~~~~----------------------~~~~g~id~~~~~~~---~~~~ 190 (1021)
+++.+++++++.. ++.... ++++ |.+.+ ++|.+.+|++..+.| +|++
T Consensus 173 ~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~ 252 (843)
T PLN00116 173 EAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 252 (843)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcC
Confidence 5788899999832 221111 2333 55442 223333444433333 5543
Q ss_pred CC--eeecc--CCh---hhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC---CCCHHHHHHHHHHHHhcCceeEEEecccc
Q psy5021 191 NS--IIIKN--IDK---DQLSAFDYYNELMLETLSNNDEFFLEKYINN---NYSINDIKNSIRKLVLKNKIIPIMCGSSL 260 (1021)
Q Consensus 191 ~~--~~~~~--~~~---~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~---~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~ 260 (1021)
.+ +...+ .+. .+.+++.+++++++|.+++.|++++++|+++ +++.+++.. +++++++..+.|+|++|
T Consensus 253 ~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~-~~~~l~~~~~~pv~~~s-- 329 (843)
T PLN00116 253 ATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKEL-MGKALMKRVMQTWLPAS-- 329 (843)
T ss_pred CCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhh-hhHHHHHHHHHhhcCCh--
Confidence 33 33333 222 2344556799999999999999999999986 699999988 99999999999999976
Q ss_pred CcccHHHHHHHHHHhCCCCccccccC---------C----cccccc-CCCceEEEEEEEeecCCCce-EEEEEEEeeEEe
Q psy5021 261 KNKGIEFLLNSICEYLPSPYDVDFKN---------N----DYNINL-NSNKFVSLVFKIFHDPFLGS-LSFIRIYSGFIK 325 (1021)
Q Consensus 261 ~~~Gi~~Ll~~i~~~lP~p~~~~~~~---------~----~~~~~~-~~~p~~~~V~k~~~~~~~g~-~~~~RV~sG~l~ 325 (1021)
+.|||+|++++|+|.+++..+ + .....| +++|++++|||+.++++.|+ ++|+|||||+|+
T Consensus 330 -----~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~ 404 (843)
T PLN00116 330 -----DALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVA 404 (843)
T ss_pred -----HHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeec
Confidence 799999999999998643211 0 112344 67899999999999998887 999999999999
Q ss_pred cCCEEE----eCCCcee-----eEeceEEEeecCCeeccccccCCCEEEEecCCcccc-CCeeccCC--ccccccCCcCC
Q psy5021 326 VGDLVY----NSTKKVK-----EKIFRILRMFANSKKDINDAHFGDIVVIVGLKESST-GDTLCSLS--ENIQLENIETP 393 (1021)
Q Consensus 326 ~gd~v~----~~~~~~~-----~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~-gdtl~~~~--~~~~~~~~~~~ 393 (1021)
+||.|+ |...+++ +++.+||.++|+++.++++|+|||||++.|+++..+ ||||++.. .+..++++.+|
T Consensus 405 ~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~~~~ 484 (843)
T PLN00116 405 TGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAMKFS 484 (843)
T ss_pred CCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccccccC
Confidence 999998 4444433 589999999999999999999999999999998654 99998876 56677888888
Q ss_pred -CCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhc--CeeeEEeCCeEE
Q psy5021 394 -IPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKEN--NIKTKISKPQVS 470 (1021)
Q Consensus 394 -~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~--~v~v~~~~p~V~ 470 (1021)
+|+++++|||.+++|+++|.+||++|++|||+|++. ++||||++|+||||||||||++||+++| ++++++|+|+|+
T Consensus 485 ~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~-~~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p~V~ 563 (843)
T PLN00116 485 VSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCT-IEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDPVVS 563 (843)
T ss_pred CCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEE-EcCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCCeEE
Confidence 999999999999999999999999999999999986 5999999999999999999999999999 999999999999
Q ss_pred EEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCC------------------------------------------
Q psy5021 471 YKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLE------------------------------------------ 508 (1021)
Q Consensus 471 yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~------------------------------------------ 508 (1021)
|||||.++++..+++ ++ .++|++++++++|++.+
T Consensus 564 yrETI~~~~~~~~~~-~~---~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gp 639 (843)
T PLN00116 564 FRETVLEKSCRTVMS-KS---PNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGP 639 (843)
T ss_pred EEecccccccCcEEE-ec---CCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeecC
Confidence 999999988766663 44 56789999999999731
Q ss_pred -CCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeecc--CCCCHHHHHHHHHHHHHHHHH
Q psy5021 509 -NKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHS--VDSSEYAFKNAAAIALKDALK 585 (1021)
Q Consensus 509 -~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~~~~a~~~a~~~a~~ 585 (1021)
...++.|.+++.+..+.+++++||++||++|+++||||||||+||+|+|+|+.+|+ .++.+++|+.|+++||++||+
T Consensus 640 ~~~~~~~~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~ 719 (843)
T PLN00116 640 ETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQL 719 (843)
T ss_pred CCCCceEEEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHHH
Confidence 01238899988887777888899999999999999999999999999999999998 566788999999999999999
Q ss_pred hcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCe--EEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 586 KANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENF--KIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 586 ~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~--~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+|+|+||||||+|||+||++++|+|++||++|||+|.++++.+++ +.|+|++|++|+++|.++||++|+|.+.+...
T Consensus 720 ~a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~ 798 (843)
T PLN00116 720 TAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCV 798 (843)
T ss_pred hCCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEE
Confidence 999999999999999999999999999999999999999887654 89999999999999999999999999877653
No 9
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=3e-107 Score=1001.27 Aligned_cols=638 Identities=26% Similarity=0.404 Sum_probs=555.0
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec------ccCce
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV------NKFKY 77 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~------~~~~~ 77 (1021)
+.++||||||+||+|||||||+++|++.+|.+.+. ....++++|++++|++||+|++++.+++.|.. ++.++
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~ 92 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSK--NAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPF 92 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccc--cCCceeecccchhhHhhcceeeccceEEEeecccccccCCCce
Confidence 57899999999999999999999999999987763 22335569999999999999999999999973 23468
Q ss_pred eEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC----C-------CCH
Q psy5021 78 MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI----G-------ANY 146 (1021)
Q Consensus 78 ~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~----~-------~~~ 146 (1021)
.+||+|||||.+|..++.++++.+|+||+|||+.+|++.||+.+|+++...++|+++|+||||+. + +++
T Consensus 93 ~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~~ 172 (836)
T PTZ00416 93 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQNF 172 (836)
T ss_pred EEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999998 4 678
Q ss_pred HHHHHHHHHHhC-----------CceeeeeeecccCC--------ceeeE------Eecccceee-----eecCCC--ee
Q psy5021 147 NNCIIDIKKKFN-----------CIVLPINFNIGIEE--------NYEGI------VDIINKKSF-----FWKENS--II 194 (1021)
Q Consensus 147 ~~~~~~i~~~l~-----------~~~~~~~~p~~~~~--------~~~g~------id~~~~~~~-----~~~~~~--~~ 194 (1021)
.+++++++..++ .++.+.|+|++++. .|.++ +++...+.+ +|++.+ +.
T Consensus 173 ~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~~~~ 252 (836)
T PTZ00416 173 VKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWI 252 (836)
T ss_pred HHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCCEEE
Confidence 999999998775 37888999998765 24443 333333333 444332 22
Q ss_pred ecc-------CChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHc--C-CCCHHHH--HH-HHHHHHhcCceeEEEeccccC
Q psy5021 195 IKN-------IDKDQLSAFDYYNELMLETLSNNDEFFLEKYIN--N-NYSINDI--KN-SIRKLVLKNKIIPIMCGSSLK 261 (1021)
Q Consensus 195 ~~~-------~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~--~-~~~~~~~--~~-~~~~~~~~~~~~Pv~~~Sa~~ 261 (1021)
..+ .|..+.+++.+++++|+|.+++.||+++++|++ + +++++++ .. .+.++++ ++|+|+
T Consensus 253 ~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~-~~~~Pv------- 324 (836)
T PTZ00416 253 KDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVM-QKWLPA------- 324 (836)
T ss_pred eccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHH-HHHhch-------
Confidence 222 355677899999999999999999999999999 5 7888874 33 6777777 799998
Q ss_pred cccHHHHHHHHHHhCCCCccccccC-----C----c----ccccc-CCCceEEEEEEEeecCCCce-EEEEEEEeeEEec
Q psy5021 262 NKGIEFLLNSICEYLPSPYDVDFKN-----N----D----YNINL-NSNKFVSLVFKIFHDPFLGS-LSFIRIYSGFIKV 326 (1021)
Q Consensus 262 ~~Gi~~Ll~~i~~~lP~p~~~~~~~-----~----~----~~~~~-~~~p~~~~V~k~~~~~~~g~-~~~~RV~sG~l~~ 326 (1021)
++.|||+|++++|+|.+++... . . ....| +++|++++|||+.++++.|+ ++|+|||||+|+.
T Consensus 325 ---~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~ 401 (836)
T PTZ00416 325 ---ADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVAT 401 (836)
T ss_pred ---HHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecC
Confidence 7999999999999998654321 0 1 12344 67899999999999999998 8999999999999
Q ss_pred CCEEE----eCCCceee-----EeceEEEeecCCeeccccccCCCEEEEecCCc--cccCCeeccCCccccccCCcCC-C
Q psy5021 327 GDLVY----NSTKKVKE-----KIFRILRMFANSKKDINDAHFGDIVVIVGLKE--SSTGDTLCSLSENIQLENIETP-I 394 (1021)
Q Consensus 327 gd~v~----~~~~~~~~-----~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~--~~~gdtl~~~~~~~~~~~~~~~-~ 394 (1021)
||.|+ +...+.++ ++.+||.++|++..++++|+|||||+|.|+++ +.+| ||++......++++.++ +
T Consensus 402 g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tg-TL~~~~~~~~l~~i~~~~~ 480 (836)
T PTZ00416 402 GQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDMKYSVS 480 (836)
T ss_pred CCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecce-eecCCCCcccccccccCCC
Confidence 99998 44444444 59999999999999999999999999999998 7899 99987767777888886 9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhc-CeeeEEeCCeEEEEe
Q psy5021 395 PVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKEN-NIKTKISKPQVSYKE 473 (1021)
Q Consensus 395 Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~-~v~v~~~~p~V~yrE 473 (1021)
|+++++|||.+++|++||.++|++|++|||+|.+. +++|||++|+||||+|||+|++||+++| ++++++|+|+|+|||
T Consensus 481 Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~-~~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~yrE 559 (836)
T PTZ00416 481 PVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCT-TEESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVSYRE 559 (836)
T ss_pred CeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEE-EcCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEEEEE
Confidence 99999999999999999999999999999999996 4899999999999999999999999999 999999999999999
Q ss_pred ecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCC------------------------CCce-----------EEec
Q psy5021 474 SIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENK------------------------ENFI-----------FKSE 518 (1021)
Q Consensus 474 ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~------------------------~~~~-----------f~~~ 518 (1021)
||.+.++..++|++++++ ++++++++|+++ + .++. |.++
T Consensus 560 TI~~~s~~~~~~~~~~~~----~~v~~~~ePl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~ 633 (836)
T PTZ00416 560 TVTEESSQTCLSKSPNKH----NRLYMKAEPLTE--ELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGPE 633 (836)
T ss_pred EecccccceEEEECCCCC----eeEEEEEEECCH--HHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccCC
Confidence 999999989999999765 389999999973 2 1333 6666
Q ss_pred cccCCC------chhhHH----HHHHHHHHHHhcCcccccceEEEEEEEEeeeecc--CCCCHHHHHHHHHHHHHHHHHh
Q psy5021 519 IIGGSI------PKEFIP----AIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHS--VDSSEYAFKNAAAIALKDALKK 586 (1021)
Q Consensus 519 ~~~~~~------~~~~~~----~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~~~~a~~~a~~~a~~~ 586 (1021)
+.|+++ +.+|++ ||++||+||+++||||||||+||+|+|+|+.+|+ .++++++|+.|+++||++|+++
T Consensus 634 ~~g~nil~~~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~~ 713 (836)
T PTZ00416 634 NKGPNVLVDVTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELT 713 (836)
T ss_pred CCCCcEEEecCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHHhh
Confidence 677766 555555 9999999999999999999999999999999998 7888999999999999999999
Q ss_pred cCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCe--EEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 587 ANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENF--KIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 587 a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~--~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
|+|+||||||+|||+||++++|+|++||++|||+|+++++.+++ ++|+|++|++|++||.++||++|+|.+.+...
T Consensus 714 a~p~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~ 791 (836)
T PTZ00416 714 ASPRLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCV 791 (836)
T ss_pred CCCEEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEE
Confidence 99999999999999999999999999999999999999887665 89999999999999999999999999887654
No 10
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=3.8e-103 Score=955.51 Aligned_cols=605 Identities=31% Similarity=0.502 Sum_probs=529.6
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+++|||+|+||+|||||||+++|++.+|.+.+. ...+++++|+.++|++||+|++++.+++.|..++.+++++|||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~--~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liD 92 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEE--LAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLID 92 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchh--cCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEe
Confidence 56789999999999999999999999999988762 3445678999999999999999998886655555589999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||.+|..++.++++.+|++|+|+|+.+|++.+++.+|+.+...++|+++|+||+|+..++++.+++++++.++..+..
T Consensus 93 TPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~ 172 (720)
T TIGR00490 93 TPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITE 172 (720)
T ss_pred CCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765443
Q ss_pred eeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHc---------C-CC
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYIN---------N-NY 233 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~---------~-~~ 233 (1021)
++.++... .+++ ++..+.+..++.++.+++.|++ . .+
T Consensus 173 v~~~~~~~--------------------------~~~~-------~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~ 219 (720)
T TIGR00490 173 VNKLIKAM--------------------------APEE-------FRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGI 219 (720)
T ss_pred HHhhhhcc--------------------------CCHH-------HhhceEechhhCCHHHHhhhhcccccchhHhhcCC
Confidence 33332110 0110 1112334455666777777766 3 45
Q ss_pred CHHHHHHHHHHHHhcC--ceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC---------C----cccccc-CCCc
Q psy5021 234 SINDIKNSIRKLVLKN--KIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN---------N----DYNINL-NSNK 297 (1021)
Q Consensus 234 ~~~~~~~~~~~~~~~~--~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~---------~----~~~~~~-~~~p 297 (1021)
+.+++.+.+.+..... .++|+ ++.|||+|++++|+|.+++... . .....| +++|
T Consensus 220 ~~~~l~~~~~~~~~~~~~~~~Pv----------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p 289 (720)
T TIGR00490 220 GFKDIYKYCKEDKQKELAKKSPL----------HQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGP 289 (720)
T ss_pred CHHHHHHHHHhccHHHHhhhhhH----------HHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCC
Confidence 6666666655444333 58888 5899999999999998643111 0 012334 6789
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCe
Q psy5021 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDT 377 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdt 377 (1021)
++++|||+.++++.|+++|+|||||+|++||.|++.+.+..++|.+|+.++|++..++++|.|||||++.|++++.+|||
T Consensus 290 l~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdt 369 (720)
T TIGR00490 290 LALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDAVAGET 369 (720)
T ss_pred eEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEECccccccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCcc-ccccCC-cCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHH
Q psy5021 378 LCSLSEN-IQLENI-ETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRIL 455 (1021)
Q Consensus 378 l~~~~~~-~~~~~~-~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~ 455 (1021)
||+.... ..++++ .+|+|+++++|+|.+++|+++|.++|++|++|||+|+++++++|||++|+||||||||++++||+
T Consensus 370 L~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~ 449 (720)
T TIGR00490 370 ICTTVENITPFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIR 449 (720)
T ss_pred eecCCcccccCcccccCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHH
Confidence 9987644 345655 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCeeeEEeCCeEEEEeeccccee-eeeEEEecCCCCceeEEEEEEEeecCCCCC------------------------
Q psy5021 456 KENNIKTKISKPQVSYKESIKKIVT-QEGKYIKQSGGKGQYGHVVIRIEPISLENK------------------------ 510 (1021)
Q Consensus 456 ~~~~v~v~~~~p~V~yrEti~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~------------------------ 510 (1021)
++|++++++++|+|+|||||.+.++ .+++| .++|++++++++|++ ++
T Consensus 450 ~~~~vev~~~~P~V~YrETi~~~~~~~~~~~------~~~~~~v~l~iePl~--~~~~~~i~~~~~~~~~~~~~~~~~~~ 521 (720)
T TIGR00490 450 EDYGLDVETSPPIVVYRETVTGTSPVVEGKS------PNKHNRFYIVVEPLE--ESVIQAFKEGKIVDMKMKKKERRRLL 521 (720)
T ss_pred HHhCCceeecCCEEEEEEeccccccceEEEc------CCCcEEEEEEEEECC--cchhhhhhcccccccccchHHHHHHH
Confidence 9999999999999999999999876 55554 237899999999998 44
Q ss_pred -----------------CCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeecc--CCCCHHH
Q psy5021 511 -----------------ENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHS--VDSSEYA 571 (1021)
Q Consensus 511 -----------------~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~ 571 (1021)
.|+.|.+++.++.+|++|++||++||+||+++||||||||+||+|+|+|+.+|+ +||++++
T Consensus 522 ~~~~~~~~~~~~i~~~~~~~~f~~~~~gg~i~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~ 601 (720)
T TIGR00490 522 IEAGMDSEEAARVEEYYEGNLFINMTRGIQYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQ 601 (720)
T ss_pred HhcCCchhhhcCEEEecCCeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccch
Confidence 789999999999999999999999999999999999999999999999999995 8899999
Q ss_pred HHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEEEEEcchhhhccCCccccc
Q psy5021 572 FKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRS 651 (1021)
Q Consensus 572 ~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~~~~~~l~~ 651 (1021)
|+.|+++||++|+.+|+|+||||||+|||+||++++|+|+++|++|||+|.+++..++.+.|+|++|++|+|||.++||+
T Consensus 602 f~~a~~~a~~~a~~~a~p~LlEPi~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~~~~~~~~I~A~vP~~e~fgy~~~Lrs 681 (720)
T TIGR00490 602 VIPAVRSGIFAAMMQAKPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQEGDMVTIIAKAPVAEMFGFAGAIRG 681 (720)
T ss_pred HHHHHHHHHHHHHHhCCCeEecceEEEEEEccHHHHhHHHHHHhhCCceeeeeccCCCcEEEEEEEehHHhcCCcHHHHh
Confidence 99999999999999999999999999999999999999999999999999998876778999999999999999999999
Q ss_pred ceeeeeeeee
Q psy5021 652 NTKGTIGHVD 661 (1021)
Q Consensus 652 ~t~g~~g~~~ 661 (1021)
+|+|.+.+..
T Consensus 682 ~T~G~a~~~~ 691 (720)
T TIGR00490 682 ATSGRCLWST 691 (720)
T ss_pred hCCCCceEEE
Confidence 9999988765
No 11
>KOG0464|consensus
Probab=100.00 E-value=5e-106 Score=838.27 Aligned_cols=648 Identities=36% Similarity=0.580 Sum_probs=581.0
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+..++|||+|++|+|+||||.+++++|.+|++...|++++|.+++|++..|++||||+++++++|.|+ +|++|+||
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwk----g~rinlid 108 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK----GHRINLID 108 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccc----cceEeeec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||+||.-++++.+++.||++.|+|++.|+++||..+|+++.+.++|.+.|+||||+..++++..+++++++|+..++.
T Consensus 109 tpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~ 188 (753)
T KOG0464|consen 109 TPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALK 188 (753)
T ss_pred CCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCce-eeEEecccceeeeecCCC-----eeecc----CChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC--
Q psy5021 164 INFNIGIEENY-EGIVDIINKKSFFWKENS-----IIIKN----IDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-- 231 (1021)
Q Consensus 164 ~~~p~~~~~~~-~g~id~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-- 231 (1021)
+|+|+++...| .|++|++..+.+.|+-+. |...+ ..++..+...+++..|++++++.|+++.++||+.
T Consensus 189 l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~ 268 (753)
T KOG0464|consen 189 LQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFD 268 (753)
T ss_pred EEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhh
Confidence 99999999999 899999999999995322 44443 3456777788899999999999999999998875
Q ss_pred ----CCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEee
Q psy5021 232 ----NYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFH 307 (1021)
Q Consensus 232 ----~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 307 (1021)
.++.++++..+++.+...+..|++||||.++.||++|||++.-|+|+|.+++... +.--...++++.||+.+
T Consensus 269 ~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernyef----lqwykddlcalafkvlh 344 (753)
T KOG0464|consen 269 ENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYEF----LQWYKDDLCALAFKVLH 344 (753)
T ss_pred ccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcchHH----HhhhhhhHHHHhhhhhc
Confidence 6889999999999999999999999999999999999999999999999874210 01134678999999999
Q ss_pred cCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCC-----
Q psy5021 308 DPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLS----- 382 (1021)
Q Consensus 308 ~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~----- 382 (1021)
|+.+|.++|.|||||+++++-.++|.+.+..+.+.+++.+.+++..++.++.||+|...+||+...+|||+..++
T Consensus 345 dkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdtivaskasa~a 424 (753)
T KOG0464|consen 345 DKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDTIVASKASAEA 424 (753)
T ss_pred ccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEecceeeccCCeEEecchhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997642
Q ss_pred -------------------ccccccCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecC
Q psy5021 383 -------------------ENIQLENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMG 443 (1021)
Q Consensus 383 -------------------~~~~~~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~G 443 (1021)
....+.++++|.|||++.|||.+-..++.+..+|+.|.+||||+.++.|++|||+++.|||
T Consensus 425 a~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqtil~~~g 504 (753)
T KOG0464|consen 425 AAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTILCGMG 504 (753)
T ss_pred HHHHhhccchhhccCCccccceeeecccCCCceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCceEEeccc
Confidence 1233678899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCeeeEEeCCeEEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCC---CCceEE--ec
Q psy5021 444 ELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENK---ENFIFK--SE 518 (1021)
Q Consensus 444 elhLei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~---~~~~f~--~~ 518 (1021)
|||+|++.+|++|+||+++-+++.+|+|||+|.+......+.....|.+.+-..|.+.+.|.+...- +-++|+ ..
T Consensus 505 elhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~tqa~ip~kkiefe~~es 584 (753)
T KOG0464|consen 505 ELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEETQAHIPFKKIEFELAES 584 (753)
T ss_pred hhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeeccccccccceeEEeecccc
Confidence 9999999999999999999999999999999999877766777666666665555555555431011 112332 11
Q ss_pred cccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEE
Q psy5021 519 IIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKV 598 (1021)
Q Consensus 519 ~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ 598 (1021)
...+ +-+--+.||+.|+..||.+|||+|+|+.+|+++|.+...|....++.-+..|+.+|+.+||.+|.-+++||+|++
T Consensus 585 ~n~~-~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkcvqealkkad~~l~eplm~l 663 (753)
T KOG0464|consen 585 ANEG-LLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKCVQEALKKADKQLLEPLMEL 663 (753)
T ss_pred ccch-hhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcCCHHHHHHHHHHHHHHHHhhhhHHHhhhhhhe
Confidence 1111 112238999999999999999999999999999999999998888888889999999999999999999999999
Q ss_pred EEEcCC-ccHhhHHHHHHcCCcEEeeeeecCCe--EEEEEEcchhhhccCCcccccceeeeeeee
Q psy5021 599 EVNLPS-EFLGIVVGDINKKRGIINTIIDHENF--KIINSYIPLRELFGYSTDLRSNTKGTIGHV 660 (1021)
Q Consensus 599 ei~~p~-~~~g~v~~~l~~rrg~i~~~~~~~~~--~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~ 660 (1021)
+|.+.. +++..|+++|.+|||.+.+.+...+. ..|-|.+|++|..+|+..+|.+|+|.+.+.
T Consensus 664 ei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~a 728 (753)
T KOG0464|consen 664 EIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFA 728 (753)
T ss_pred EEEEecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhhcHHHHHHHHhcccceEE
Confidence 998866 99999999999999999988876644 569999999999999999999999987665
No 12
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=3.9e-102 Score=949.68 Aligned_cols=610 Identities=30% Similarity=0.491 Sum_probs=504.2
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.++||||+|+||+|||||||+++|++.+|.+.+. ..++++++|+.++|++||+|++++.+++.|..++.++++||||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liD 93 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEE--LAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLID 93 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchh--hcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEc
Confidence 57899999999999999999999999999988763 3445788999999999999999999999996555689999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||.+|..++.++++.+|++|+|||+.+|++.||+.+|+++.+.++|+|+|+||||+..++++...+++++.++...
T Consensus 94 tPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~-- 171 (731)
T PRK07560 94 TPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKII-- 171 (731)
T ss_pred CCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999989999999999999998887777777666653210
Q ss_pred eeeecccCCceeeEEecccceee----eecCCC--eeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSF----FWKENS--IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSIND 237 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~ 237 (1021)
..+.++++.+.++.+ .+++.. .... ..+..+....+.+.+. ....++
T Consensus 172 --------~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~---------------sa~~~~~~~~~~~~~~----~~~~~~ 224 (731)
T PRK07560 172 --------KDVNKLIKGMAPEEFKEKWKVDVEDGTVAFG---------------SALYNWAISVPMMQKT----GIKFKD 224 (731)
T ss_pred --------HHHHHHHHHhhhhhhhcceeecCCCCcEeee---------------ecccccceeHHHHHHh----CCCHHH
Confidence 011111211111111 011100 0000 0000000000111110 011111
Q ss_pred HHHHHH----HHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC---------Cc----ccccc-CCCceE
Q psy5021 238 IKNSIR----KLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN---------ND----YNINL-NSNKFV 299 (1021)
Q Consensus 238 ~~~~~~----~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~---------~~----~~~~~-~~~p~~ 299 (1021)
+.+... ..+ ..++|++ +.|||+|++++|+|.++++.. .+ ....| +++|++
T Consensus 225 l~e~~~~~~~~~l--~~~~Pv~----------~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~ 292 (731)
T PRK07560 225 IIDYYEKGKQKEL--AEKAPLH----------EVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLV 292 (731)
T ss_pred HHHHHhcCCHHHH--Hhhccch----------hHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEE
Confidence 111110 000 0124442 489999999999998654311 00 11234 678999
Q ss_pred EEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeec
Q psy5021 300 SLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLC 379 (1021)
Q Consensus 300 ~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~ 379 (1021)
++|||+.+|++.|+++|+|||||+|++||.|++.+.+.++++.+|+.++|++..++++|.||||+++.|++++.+||||+
T Consensus 293 a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~GdtL~ 372 (731)
T PRK07560 293 MMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDARAGETVV 372 (731)
T ss_pred EEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEEEcccccccCCEEe
Confidence 99999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred cCCccccccCC-cCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhc
Q psy5021 380 SLSENIQLENI-ETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKEN 458 (1021)
Q Consensus 380 ~~~~~~~~~~~-~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~ 458 (1021)
+......++++ .+|+|+++++|+|.++.|.+||.++|++|++|||+|++.++++|||++|+||||||||++++||+++|
T Consensus 373 ~~~~~~~~~~~~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~~ 452 (731)
T PRK07560 373 SVEDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRDY 452 (731)
T ss_pred CCCccccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHHh
Confidence 87766677776 48899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEEeCCeEEEEeeccccee-eeeEEEecCCCCceeEEEEEEEeecCCCC----------------------------
Q psy5021 459 NIKTKISKPQVSYKESIKKIVT-QEGKYIKQSGGKGQYGHVVIRIEPISLEN---------------------------- 509 (1021)
Q Consensus 459 ~v~v~~~~p~V~yrEti~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~~~~~---------------------------- 509 (1021)
++++++++|+|+|||||.++++ ..++ ++ ++|++|+++++|++.+.
T Consensus 453 ~vev~~~~p~V~yrETI~~~~~~~~~~----~~--~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 526 (731)
T PRK07560 453 GIEVVTSEPIVVYRETVRGKSQVVEGK----SP--NKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEAKILREKLIEA 526 (731)
T ss_pred CCceEecCCEEEEEEecccCccceEEE----CC--CCceEEEEEEEECCHHHHHHHhcCCcccccchHHHHHHHHhhhhc
Confidence 9999999999999999998864 3322 33 33789999999997310
Q ss_pred -------------CCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeec--cCCCCHHHHHH
Q psy5021 510 -------------KENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFH--SVDSSEYAFKN 574 (1021)
Q Consensus 510 -------------~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~--~~~s~~~~~~~ 574 (1021)
+.++.|.+++.++.+|++|++||++||+||+++||||||||+||+|+|+|+++| ..++++++|+.
T Consensus 527 g~~~~~~~~i~~~~~~~~f~~~~~gg~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~ 606 (731)
T PRK07560 527 GMDKDEAKRVWAIYNGNVFIDMTKGIQYLNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIP 606 (731)
T ss_pred CCchhhhhceeeccCCeEEEECCCCccCHHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccccccchHHH
Confidence 137999999999999999999999999999999999999999999999999999 45778999999
Q ss_pred HHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEEEEEcchhhhccCCccccccee
Q psy5021 575 AAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTK 654 (1021)
Q Consensus 575 a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~~~~~~l~~~t~ 654 (1021)
|+++||++|+++|+|+||||||+|||+||++|+|+|+++|++|||+|.+++..++.+.|+|++|++|+++|.++||++|+
T Consensus 607 a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~ 686 (731)
T PRK07560 607 AVRNAIFAAMLTAKPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEGDMAIIEAEAPVAEMFGFAGEIRSATE 686 (731)
T ss_pred HHHHHHHHHHHhCCCEEeecEEEEEEEecHHHhhHHHHHHHhcCCeeeeeecCCCcEEEEEEEehHHhcCCchHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999887778999999999999999999999999
Q ss_pred eeeeeeec
Q psy5021 655 GTIGHVDH 662 (1021)
Q Consensus 655 g~~g~~~~ 662 (1021)
|.+.+...
T Consensus 687 G~~~~~~~ 694 (731)
T PRK07560 687 GRALWSTE 694 (731)
T ss_pred CCceEEEE
Confidence 99887654
No 13
>KOG0469|consensus
Probab=100.00 E-value=4.9e-95 Score=771.69 Aligned_cols=641 Identities=26% Similarity=0.361 Sum_probs=516.2
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-----------
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV----------- 72 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~----------- 72 (1021)
+..+|||+.+++|+|||||||+++|...+|.++.. -..+++++|++++|++|||||+++++++.++.
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~a--kaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~ 92 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAA--KAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE 92 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeec--ccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence 56789999999999999999999999999988642 13458999999999999999999999998765
Q ss_pred -ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCH----H
Q psy5021 73 -NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANY----N 147 (1021)
Q Consensus 73 -~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~----~ 147 (1021)
++.++.|||||.|||+||++++..|||+.|||++|||+.+|++.||+.+++|+...++..++|+||||+.-.++ +
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~E 172 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQE 172 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHH
Confidence 24678999999999999999999999999999999999999999999999999999999999999999975443 3
Q ss_pred HHHHHHHHHh-CCceeee----------e-eec----ccCCceeeE----------------EecccceeeeecCCCe--
Q psy5021 148 NCIIDIKKKF-NCIVLPI----------N-FNI----GIEENYEGI----------------VDIINKKSFFWKENSI-- 193 (1021)
Q Consensus 148 ~~~~~i~~~l-~~~~~~~----------~-~p~----~~~~~~~g~----------------id~~~~~~~~~~~~~~-- 193 (1021)
+..+.+++.. +.+.... + .|. +.++.+.|+ +|...+-..+|++..+
T Consensus 173 eLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~ 252 (842)
T KOG0469|consen 173 ELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNP 252 (842)
T ss_pred HHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccCc
Confidence 3333333322 1222211 1 121 112233332 4555555667765432
Q ss_pred -----ee-------ccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC---CCCHHHHH---HHHHHHHhcCceeEEE
Q psy5021 194 -----II-------KNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN---NYSINDIK---NSIRKLVLKNKIIPIM 255 (1021)
Q Consensus 194 -----~~-------~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~---~~~~~~~~---~~~~~~~~~~~~~Pv~ 255 (1021)
.. .+....+..++.....++++++.+...+-...||+. .+..++.. +++-+.+. ++|+|-
T Consensus 253 ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vM-r~wLPA- 330 (842)
T KOG0469|consen 253 KTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVM-RKWLPA- 330 (842)
T ss_pred cCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHH-HHhcch-
Confidence 11 122334555666778899999988877666666654 22222211 22333222 468885
Q ss_pred eccccCcccHHHHHHHHHHhCCCCccccccC---------Ccc----cccc-CCCceEEEEEEEeecCCC-ceEEEEEEE
Q psy5021 256 CGSSLKNKGIEFLLNSICEYLPSPYDVDFKN---------NDY----NINL-NSNKFVSLVFKIFHDPFL-GSLSFIRIY 320 (1021)
Q Consensus 256 ~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~---------~~~----~~~~-~~~p~~~~V~k~~~~~~~-g~~~~~RV~ 320 (1021)
-+.||++|+-+||||..+|..+ +++ -..| +++|+.+||+|+...... .+++|+|||
T Consensus 331 ---------adallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVF 401 (842)
T KOG0469|consen 331 ---------ADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVF 401 (842)
T ss_pred ---------HHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeee
Confidence 5899999999999999888755 111 1245 899999999999977665 469999999
Q ss_pred eeEEecCCEEEe----CCCceee-----EeceEEEeecCCeeccccccCCCEEEEecCCc-cccCCeeccCCccccccCC
Q psy5021 321 SGFIKVGDLVYN----STKKVKE-----KIFRILRMFANSKKDINDAHFGDIVVIVGLKE-SSTGDTLCSLSENIQLENI 390 (1021)
Q Consensus 321 sG~l~~gd~v~~----~~~~~~~-----~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~-~~~gdtl~~~~~~~~~~~~ 390 (1021)
||++..|++++. +..++++ .|.+...|+|+..++++.++||+|+++.|+++ +.++.||+.......++.+
T Consensus 402 sG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~AHNmrvM 481 (842)
T KOG0469|consen 402 SGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAAHNMRVM 481 (842)
T ss_pred cceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhhhccceEE
Confidence 999999999994 4445543 36667789999999999999999999999998 5677888887777777778
Q ss_pred cCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhc-CeeeEEeCCe
Q psy5021 391 ETP-IPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKEN-NIKTKISKPQ 468 (1021)
Q Consensus 391 ~~~-~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~-~v~v~~~~p~ 468 (1021)
+|. .||+++++|++++.|++||.++|++|+++||.+.+.+ +|+||+++.|.||||||||+++|++.| ++.++.|+|.
T Consensus 482 KFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~-~esGehiiAgaGeLHLEICLkDLeedhA~iPlk~sdPv 560 (842)
T KOG0469|consen 482 KFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCII-EESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPV 560 (842)
T ss_pred EeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEe-ccCCceEEeccchhhHHHHHhhHhhcccCCceecCCCe
Confidence 776 8999999999999999999999999999999999986 589999999999999999999999999 9999999999
Q ss_pred EEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCC------CC--------------------------------
Q psy5021 469 VSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLE------NK-------------------------------- 510 (1021)
Q Consensus 469 V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~------~~-------------------------------- 510 (1021)
|+||||+.+.++.... +.....+.++.+.++|++++ .|
T Consensus 561 VsYrEtvs~~ss~~~l----sKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCf 636 (842)
T KOG0469|consen 561 VSYRETVSEESSQTCL----SKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCF 636 (842)
T ss_pred eeeecccccccchhhh----ccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEe
Confidence 9999999987653221 11222346788999999751 00
Q ss_pred -----CCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeeccCCCCHHHH--HHHHHHHHHHH
Q psy5021 511 -----ENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAF--KNAAAIALKDA 583 (1021)
Q Consensus 511 -----~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~--~~a~~~a~~~a 583 (1021)
..|.+.|.+.+-.+-.++++++..||+||.++|||+|+.|++|+|.+.|...|....+.+.. ...+|++|+.+
T Consensus 637 gPd~tg~Nll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~ 716 (842)
T KOG0469|consen 637 GPDGTGPNLLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYAS 716 (842)
T ss_pred CCCCCCCcEEEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHH
Confidence 13555666666677789999999999999999999999999999999999999877666544 45999999999
Q ss_pred HHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCC--eEEEEEEcchhhhccCCcccccceeeeeeeee
Q psy5021 584 LKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHEN--FKIINSYIPLRELFGYSTDLRSNTKGTIGHVD 661 (1021)
Q Consensus 584 ~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~--~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~ 661 (1021)
++.|+|+|+||+|.|||+||++++|.||+.|++|||++.+++...| ++.|+|++|+.|+|||..+||+.|.|.++..+
T Consensus 717 ~l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~ 796 (842)
T KOG0469|consen 717 VLTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQM 796 (842)
T ss_pred HHhcCceecCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCccccce
Confidence 9999999999999999999999999999999999999999988765 59999999999999999999999999987665
Q ss_pred c
Q psy5021 662 H 662 (1021)
Q Consensus 662 ~ 662 (1021)
+
T Consensus 797 v 797 (842)
T KOG0469|consen 797 V 797 (842)
T ss_pred e
Confidence 4
No 14
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=4.9e-78 Score=702.99 Aligned_cols=449 Identities=25% Similarity=0.426 Sum_probs=410.3
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccC----CcccccChHHHhhhCceeeeeeeEEEeecccCceeE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHH----GTTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~----~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i 79 (1021)
..+++|||+|+||+|||||||+++|++.+|.+...|.++. ..+++||++.|++||+|+.++..++.|+ ++.+
T Consensus 6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~----~~~i 81 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR----DCLI 81 (526)
T ss_pred hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC----CEEE
Confidence 4578999999999999999999999999999999998863 2356999999999999999999999999 9999
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
|+||||||.+|..++.++++.+|++|+|+|+++|++.+++.+|+.+...++|+++|+||+|+.++++.++++++++.|+.
T Consensus 82 nliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~ 161 (526)
T PRK00741 82 NLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGI 161 (526)
T ss_pred EEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHH
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDI 238 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~ 238 (1021)
.++++++|++.++.|.|++|+++++.+.|..+.-. ...+.|.+++.||++|++|+++ .+ +++
T Consensus 162 ~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~---------------~~~~~e~~~~~dd~lle~~l~~~~~--~~l 224 (526)
T PRK00741 162 ACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGH---------------TIQEVEIIKGLDNPELDELLGEDLA--EQL 224 (526)
T ss_pred CCeeEEeccccCCceeEEEEeecceeeecccCCCC---------------cceeeeeccCCCHHHHHHHhcccHH--HHH
Confidence 99999999999999999999999999999532100 0134568899999999999997 44 666
Q ss_pred HHHH-----------HHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEee
Q psy5021 239 KNSI-----------RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFH 307 (1021)
Q Consensus 239 ~~~~-----------~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 307 (1021)
...+ ++++..+.++|||||||++|.||++|||+|++++|+|.+++... ......+.+++++|||+.+
T Consensus 225 ~~~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~--~~~~~~~~~~~~~VFK~~~ 302 (526)
T PRK00741 225 REELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDE--REVEPTEEKFSGFVFKIQA 302 (526)
T ss_pred HHHHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccc--eeecCCCCceEEEEEEEEe
Confidence 6666 88999999999999999999999999999999999997643210 0111245679999999994
Q ss_pred ---cCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCcc
Q psy5021 308 ---DPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSEN 384 (1021)
Q Consensus 308 ---~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~ 384 (1021)
++++|+++|+|||||+|++||.|+|.++++++++.+++.++|+++.++++|.||||+++.|++++++|||||... +
T Consensus 303 ~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GDTL~~~~-~ 381 (526)
T PRK00741 303 NMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGE-K 381 (526)
T ss_pred cCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEECCCCCccCCCccCCC-c
Confidence 568999999999999999999999999999999999999999999999999999999999999999999999865 6
Q ss_pred ccccCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEE
Q psy5021 385 IQLENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKI 464 (1021)
Q Consensus 385 ~~~~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~ 464 (1021)
..++++++|+|+++++|+|+++.|.+||.+||++|++||| +++.++++|||++|+|||||||||+++||+++||+++.+
T Consensus 382 ~~~~~i~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~~RL~~ey~v~v~~ 460 (526)
T PRK00741 382 LKFTGIPNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVAHRLKNEYNVEAIY 460 (526)
T ss_pred cccCCCCCCCccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHHHHHHHHhCCEEEE
Confidence 7788999999999999999999999999999999999995 999999999999999999999999999999999999999
Q ss_pred eCCeEEEEeeccc
Q psy5021 465 SKPQVSYKESIKK 477 (1021)
Q Consensus 465 ~~p~V~yrEti~~ 477 (1021)
++|+|++-.-+..
T Consensus 461 ~~~~v~~~rw~~~ 473 (526)
T PRK00741 461 EPVGVATARWVEC 473 (526)
T ss_pred ecCCccEEEEEeC
Confidence 9999999887753
No 15
>KOG0468|consensus
Probab=100.00 E-value=1.1e-78 Score=666.15 Aligned_cols=642 Identities=21% Similarity=0.312 Sum_probs=499.6
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~li 82 (1021)
...++|||+++||.+||||+|.+.|..+++.--. -..+..-+++|.+..|++||++|++...++...+ +++.|.+|++
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~-~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFS-KNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceecccccc-ccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 5788999999999999999999999877763221 1123346899999999999999999999988876 6788999999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCH-----------HHHHH
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANY-----------NNCII 151 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~-----------~~~~~ 151 (1021)
|||||++|+.++.++++.+|++++|||+.+|+.-+|+.+++++-+.++|+++|+||+||...++ ..+++
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~ 282 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIID 282 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999974432 33445
Q ss_pred HHHHHhC---CceeeeeeecccCCcee---------------------eEEecccceeeeec-----CCC--eeec----
Q psy5021 152 DIKKKFN---CIVLPINFNIGIEENYE---------------------GIVDIINKKSFFWK-----ENS--IIIK---- 196 (1021)
Q Consensus 152 ~i~~~l~---~~~~~~~~p~~~~~~~~---------------------g~id~~~~~~~~~~-----~~~--~~~~---- 196 (1021)
+++..+. ..-.++--|+..+-.|. |-++.......+|+ ..+ |..+
T Consensus 283 ~iN~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~ 362 (971)
T KOG0468|consen 283 EINNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDG 362 (971)
T ss_pred HhcchhhhcccccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccccCCCCC
Confidence 5554332 22222333433222221 11344344444443 333 2222
Q ss_pred cCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC---CCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHH
Q psy5021 197 NIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN---NYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSIC 273 (1021)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~---~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~ 273 (1021)
..+..+.+++.+..+++++.+...-++-+...+.. .++.++++...+-.++ .++.-|++.. ..+.|+++
T Consensus 363 ~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~--lvc~~ffg~~------sgfvd~~v 434 (971)
T KOG0468|consen 363 SGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLR--LVCKSFFGIE------SGFVDMPV 434 (971)
T ss_pred cccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHH--HHHHHhccch------hhhhHhhH
Confidence 12346888999999999987766555555555544 6777776644332221 0111233332 46899999
Q ss_pred HhCCCCccccccC-----C--------cccccc-CCCceEEEEEEEeec-CCCceEEEEEEEeeEEecCCEEEeCCCc--
Q psy5021 274 EYLPSPYDVDFKN-----N--------DYNINL-NSNKFVSLVFKIFHD-PFLGSLSFIRIYSGFIKVGDLVYNSTKK-- 336 (1021)
Q Consensus 274 ~~lP~p~~~~~~~-----~--------~~~~~~-~~~p~~~~V~k~~~~-~~~g~~~~~RV~sG~l~~gd~v~~~~~~-- 336 (1021)
+++|+|.+..... . ..++.| +++|++..+.|++.. ....+.+|+||+||+++.|+.|.....+
T Consensus 435 ~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlgeny~ 514 (971)
T KOG0468|consen 435 EHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGENYS 514 (971)
T ss_pred hhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecceeeEeecccc
Confidence 9999998743322 1 124566 889999999999964 4467899999999999999999843221
Q ss_pred -------eeeEeceEEEeecCCeeccccccCCCEEEEecCCc-cccCCeeccCCc---cccccCCcC-CCCeEEEEEEeC
Q psy5021 337 -------VKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKE-SSTGDTLCSLSE---NIQLENIET-PIPVISISIEPI 404 (1021)
Q Consensus 337 -------~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~-~~~gdtl~~~~~---~~~~~~~~~-~~Pv~~~~iep~ 404 (1021)
....|.+++...+++..+|++|+||.++.|.|+++ +.+..|+++... ...++++.+ +.|++++++||.
T Consensus 515 leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKiaveP~ 594 (971)
T KOG0468|consen 515 LEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAVEPL 594 (971)
T ss_pred CCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCCcceEEEEeccC
Confidence 34578899999999999999999999999999987 678888887543 344666654 589999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhc-CeeeEEeCCeEEEEeecccceeeee
Q psy5021 405 FKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKEN-NIKTKISKPQVSYKESIKKIVTQEG 483 (1021)
Q Consensus 405 ~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~-~v~v~~~~p~V~yrEti~~~~~~~~ 483 (1021)
+|++++||.+||++.++.+|.+... .+|+||++|.|.|||+|++++.+||+.| .+++++++|.|.|+||+.++++..
T Consensus 595 nPsELPKmldgLrKinKsYPl~~tk-VEESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~vetssik- 672 (971)
T KOG0468|consen 595 NPSELPKMLDGLRKINKSYPLVITK-VEESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETVVETSSIK- 672 (971)
T ss_pred ChhhhhHHHHHHHhhcccCCcEEEe-hhhcCceEEecCchhhHHHHHHHHHHHHhhhceeecCceeEEEEeeecccchh-
Confidence 9999999999999999999999887 4799999999999999999999999999 999999999999999998866431
Q ss_pred EEEecCCCCceeEEEEEEEeecCC------CCC-------------------------------------CCceEEeccc
Q psy5021 484 KYIKQSGGKGQYGHVVIRIEPISL------ENK-------------------------------------ENFIFKSEII 520 (1021)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~P~~~------~~~-------------------------------------~~~~f~~~~~ 520 (1021)
++ ..+..+ -..+.+-+||++. ++| .+|.+.|.+.
T Consensus 673 cf-aetpnk--knkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~dDTL 749 (971)
T KOG0468|consen 673 CF-AETPNK--KNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILLDDTL 749 (971)
T ss_pred hh-ccCCCc--cCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCCCCCCCceeecCcC
Confidence 11 111111 2457788888862 010 1245555555
Q ss_pred cCCCchh----hHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeeccCCCCHH--HHHHHHHHHHHHHHHhcCcceeee
Q psy5021 521 GGSIPKE----FIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEY--AFKNAAAIALKDALKKANSYILEP 594 (1021)
Q Consensus 521 ~~~~~~~----~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~--~~~~a~~~a~~~a~~~a~~~llEP 594 (1021)
..+++++ ++++|.+||+|++++||||+||+++|+++|.|+...+...+.+ ....+||++++.|+..|.|+||||
T Consensus 750 p~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtPrLmEP 829 (971)
T KOG0468|consen 750 PTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATPRLMEP 829 (971)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHHHHHHhhchhhcCc
Confidence 5555554 5777999999999999999999999999999998876544443 445699999999999999999999
Q ss_pred eEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCe--EEEEEEcchhhhccCCcccccceeeeeee
Q psy5021 595 IMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENF--KIINSYIPLRELFGYSTDLRSNTKGTIGH 659 (1021)
Q Consensus 595 ~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~--~~i~a~~P~~e~~~~~~~l~~~t~g~~g~ 659 (1021)
+|.|||++|.+++..|+..|++|||+|....+..|+ +.|+|++|+.++|||.++||..|+|.+-+
T Consensus 830 ~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C 896 (971)
T KOG0468|consen 830 VYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFC 896 (971)
T ss_pred eEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhHH
Confidence 999999999999999999999999999988877664 89999999999999999999999999643
No 16
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=3.5e-77 Score=707.56 Aligned_cols=460 Identities=26% Similarity=0.411 Sum_probs=407.5
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~li 82 (1021)
+.++||||+|+||+|||||||+++|++.+|.+... ..+.+++|+++.|++||+|++++.+++.|.. +++++.++||
T Consensus 3 ~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~---~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLi 79 (600)
T PRK05433 3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSER---EMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLI 79 (600)
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhcCCCccc---ccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEE
Confidence 56889999999999999999999999999988763 2367899999999999999999999999974 4567899999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCcee
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVL 162 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~ 162 (1021)
|||||.+|..++.++++.+|++|+|||+++|++.|+...|..+...++|+++|+||+|+..++..+..+++.+.++.+
T Consensus 80 DTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~-- 157 (600)
T PRK05433 80 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID-- 157 (600)
T ss_pred ECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC--
Confidence 999999999999999999999999999999999999999999988899999999999998776665555555544321
Q ss_pred eeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHH
Q psy5021 163 PINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSI 242 (1021)
Q Consensus 163 ~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~ 242 (1021)
T Consensus 158 -------------------------------------------------------------------------------- 157 (600)
T PRK05433 158 -------------------------------------------------------------------------------- 157 (600)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEee
Q psy5021 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSG 322 (1021)
Q Consensus 243 ~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG 322 (1021)
..+++++||++|.|+++|+++|.+.+|+|... +++|+.++|||+++|+++|.++++||++|
T Consensus 158 --------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~-----------~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG 218 (600)
T PRK05433 158 --------ASDAVLVSAKTGIGIEEVLEAIVERIPPPKGD-----------PDAPLKALIFDSWYDNYRGVVVLVRVVDG 218 (600)
T ss_pred --------cceEEEEecCCCCCHHHHHHHHHHhCccccCC-----------CCCCceEEEEEEEecCCCceEEEEEEEcC
Confidence 01378889999999999999999999999753 57899999999999999999999999999
Q ss_pred EEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe-c---CCccccCCeeccCCcc--ccccCCcCCCCe
Q psy5021 323 FIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV-G---LKESSTGDTLCSLSEN--IQLENIETPIPV 396 (1021)
Q Consensus 323 ~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~gdtl~~~~~~--~~~~~~~~~~Pv 396 (1021)
+|+.||.|++.+.+..+++.+++.+.+ +..+++++.||||+++. | ++++++||||++...+ ..+++++.|+|+
T Consensus 219 ~Lk~Gd~i~~~~~~~~~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~ 297 (600)
T PRK05433 219 TLKKGDKIKMMSTGKEYEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPAEEPLPGFKEVKPM 297 (600)
T ss_pred EEecCCEEEEecCCceEEEEEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEECCCCccccCCCCCCCCCcE
Confidence 999999999999999999999986555 78999999999999885 4 4568999999987765 468889999999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEe-----cChhHHHHHHHHHHhhcCeeeEEeCCeEEE
Q psy5021 397 ISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSG-----MGELHLEIIVDRILKENNIKTKISKPQVSY 471 (1021)
Q Consensus 397 ~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g-----~GelhLei~~~rL~~~~~v~v~~~~p~V~y 471 (1021)
++++++|.+.+|.++|.++|++|++|||||.++ +||++.++.| ||+|||||+++||+++||+++.+++|.|+|
T Consensus 298 v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~~~~v~~~~P~V~Y 375 (600)
T PRK05433 298 VFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVY 375 (600)
T ss_pred EEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE--ecCCcceecceEeecHHHHHHHHHHHHHHHhhCceEEEecCEEEE
Confidence 999999999999999999999999999999997 6899999999 999999999999999999999999999999
Q ss_pred EeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceE
Q psy5021 472 KESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVI 551 (1021)
Q Consensus 472 rEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~ 551 (1021)
|||+++. +++.|.+ | .|||
T Consensus 376 reti~~g--------------------------------~~~~~~~--------------------------p-~~~p-- 394 (600)
T PRK05433 376 EVTLTDG--------------------------------EVIEVDN--------------------------P-SKLP-- 394 (600)
T ss_pred EEEEeCC--------------------------------cEEEEEC--------------------------c-ccCC--
Confidence 9998751 0111211 1 2343
Q ss_pred EEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeE
Q psy5021 552 KIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFK 631 (1021)
Q Consensus 552 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~ 631 (1021)
||++++ .||||||+++|.+|++|+|+||++|++|||++.+++..+++.
T Consensus 395 --------------ds~~~~------------------~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~~~ 442 (600)
T PRK05433 395 --------------DPGKIE------------------EIEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLGNRV 442 (600)
T ss_pred --------------Cccccc------------------eEECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecCCeE
Confidence 455432 899999999999999999999999999999999999987889
Q ss_pred EEEEEcchhhh-ccCCcccccceeeeeeeeecc
Q psy5021 632 IINSYIPLREL-FGYSTDLRSNTKGTIGHVDHG 663 (1021)
Q Consensus 632 ~i~a~~P~~e~-~~~~~~l~~~t~g~~g~~~~G 663 (1021)
.|+|.+|++|+ ++|.++|+++|+|++.+...-
T Consensus 443 ~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~ 475 (600)
T PRK05433 443 ELTYELPLAEIVFDFFDRLKSVSRGYASLDYEF 475 (600)
T ss_pred EEEEEechHHhhhhHHHHhHhhcCCEEEEEEEE
Confidence 99999999999 999999999999999988753
No 17
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=1.6e-76 Score=698.52 Aligned_cols=441 Identities=29% Similarity=0.434 Sum_probs=402.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
||||+|+||+|||||||+++|++.+|.+...+.++. +++|+.++|++||+|+.++..++.|+ ++++||||||||
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~--~~~D~~~~ErerGiTI~~~~~~v~~~----~~kinlIDTPGh 74 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAE--RVMDSNDLERERGITILAKNTAIRYN----GTKINIVDTPGH 74 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCccccccee--ecccCchHHHhCCccEEeeeEEEEEC----CEEEEEEECCCH
Confidence 799999999999999999999999999888776654 69999999999999999999999999 999999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeeeee
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFN 167 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p 167 (1021)
.||..++.++++.+|++|+|||+.+|++.||+.+|+.+...++|+++|+||+|++.+++.++++++.+.+..-
T Consensus 75 ~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~------- 147 (594)
T TIGR01394 75 ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAEL------- 147 (594)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhh-------
Confidence 9999999999999999999999999999999999999999999999999999998888888888777765310
Q ss_pred cccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy5021 168 IGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLVL 247 (1021)
Q Consensus 168 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~~~ 247 (1021)
. . +.
T Consensus 148 --------------------------------------------------g-~-------------~~------------ 151 (594)
T TIGR01394 148 --------------------------------------------------G-A-------------DD------------ 151 (594)
T ss_pred --------------------------------------------------c-c-------------cc------------
Confidence 0 0 00
Q ss_pred cCceeEEEeccccCcc----------cHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEE
Q psy5021 248 KNKIIPIMCGSSLKNK----------GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFI 317 (1021)
Q Consensus 248 ~~~~~Pv~~~Sa~~~~----------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~ 317 (1021)
....+|++++||++|. |+++|++.|++++|+|... .++||.++||+++++++.|+++++
T Consensus 152 e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~-----------~~~pl~~~V~~i~~d~~~Grv~~g 220 (594)
T TIGR01394 152 EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGD-----------LDEPLQMLVTNLDYDEYLGRIAIG 220 (594)
T ss_pred ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCC-----------CCCCEEEEEEEEEeeCCCceEEEE
Confidence 0113689999999996 7999999999999999653 578999999999999999999999
Q ss_pred EEEeeEEecCCEEEeCCCc---eeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCCcCCC
Q psy5021 318 RIYSGFIKVGDLVYNSTKK---VKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPI 394 (1021)
Q Consensus 318 RV~sG~l~~gd~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~~~~~ 394 (1021)
||+||+|++||.|++.+.+ ..++|++|+.+.|.++.++++|.||||+++.|++++.+|||||+...+..++++++++
T Consensus 221 RV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~~~~~~~~l~~~~~~~ 300 (594)
T TIGR01394 221 RVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEVPEALPTITVDE 300 (594)
T ss_pred EEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEeCCCccccCCCCCCCC
Confidence 9999999999999987653 3579999999999999999999999999999999999999999998888899999999
Q ss_pred CeEEEEEEeCCC---CCHHH------HHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEe
Q psy5021 395 PVISISIEPIFK---NDQEK------LLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKIS 465 (1021)
Q Consensus 395 Pv~~~~iep~~~---~d~~k------l~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~ 465 (1021)
|+++++++|.+. .+..| |.++|.++.++||+|+++.++++++++|+|+|||||+|+++||+++ |+++.++
T Consensus 301 P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre-g~e~~~~ 379 (594)
T TIGR01394 301 PTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMRRE-GFELQVG 379 (594)
T ss_pred CeEEEEEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhcc-CceEEEe
Confidence 999999999865 33333 9999999999999999999999999999999999999999999999 9999999
Q ss_pred CCeEEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcc
Q psy5021 466 KPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVV 545 (1021)
Q Consensus 466 ~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl 545 (1021)
+|+|+||| +.+
T Consensus 380 ~P~V~yre-i~g-------------------------------------------------------------------- 390 (594)
T TIGR01394 380 RPQVIYKE-IDG-------------------------------------------------------------------- 390 (594)
T ss_pred CCEEEEEe-CCC--------------------------------------------------------------------
Confidence 99999999 520
Q ss_pred cccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeee
Q psy5021 546 LGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTII 625 (1021)
Q Consensus 546 ~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~ 625 (1021)
.+|||||+++|.+|++|+|+||++|++|||++.+++
T Consensus 391 --------------------------------------------~llEPi~~~~i~vp~e~~G~v~~~l~~RrG~~~~~~ 426 (594)
T TIGR01394 391 --------------------------------------------KKLEPIEELTIDVPEEHVGAVIEKLGKRKGEMVDME 426 (594)
T ss_pred --------------------------------------------eEECCEEEEEEEechHHHHHHHHHHHHhCCEEeccE
Confidence 468999999999999999999999999999999999
Q ss_pred ecC-CeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 626 DHE-NFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 626 ~~~-~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+.+ ++..|+|.+|++++++|..+|+++|.|.+.+...
T Consensus 427 ~~~~~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~ 464 (594)
T TIGR01394 427 PSGNGRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHV 464 (594)
T ss_pred ECCCCEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEE
Confidence 854 6899999999999999999999999999887654
No 18
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=6e-76 Score=696.34 Aligned_cols=457 Identities=26% Similarity=0.405 Sum_probs=402.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEEcC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINIIDT 84 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~liDt 84 (1021)
++||||+|+||+|||||||+++|++.++.+... +.+.+++|+.++|++||+|++++.+++.|.. ++..+.++||||
T Consensus 1 ~~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~---~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDT 77 (595)
T TIGR01393 1 KNIRNFSIIAHIDHGKSTLADRLLEYTGAISER---EMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDT 77 (595)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHcCCCccc---cccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEEC
Confidence 469999999999999999999999999888753 3467899999999999999999999999963 345689999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeee
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPI 164 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 164 (1021)
|||.+|..++.++++.+|++|+|+|+++|++.++...|..+...++|+++|+||+|+..++.++..+++.+.++..
T Consensus 78 PG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~---- 153 (595)
T TIGR01393 78 PGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLD---- 153 (595)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC----
Confidence 9999999999999999999999999999999999999988888899999999999997666555555554444311
Q ss_pred eeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHH
Q psy5021 165 NFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRK 244 (1021)
Q Consensus 165 ~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~ 244 (1021)
T Consensus 154 -------------------------------------------------------------------------------- 153 (595)
T TIGR01393 154 -------------------------------------------------------------------------------- 153 (595)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEE
Q psy5021 245 LVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFI 324 (1021)
Q Consensus 245 ~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l 324 (1021)
..+++++||++|.|+++|+++|.+++|+|... +++|+.++||++++|+++|.++++||++|+|
T Consensus 154 ------~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~-----------~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~l 216 (595)
T TIGR01393 154 ------ASEAILASAKTGIGIEEILEAIVKRVPPPKGD-----------PDAPLKALIFDSHYDNYRGVVALVRVFEGTI 216 (595)
T ss_pred ------cceEEEeeccCCCCHHHHHHHHHHhCCCCCCC-----------CCCCeEEEEEEEEEeCCCcEEEEEEEECCEE
Confidence 11378899999999999999999999999763 5789999999999999999999999999999
Q ss_pred ecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe-c---CCccccCCeeccCCcc--ccccCCcCCCCeEE
Q psy5021 325 KVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV-G---LKESSTGDTLCSLSEN--IQLENIETPIPVIS 398 (1021)
Q Consensus 325 ~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~gdtl~~~~~~--~~~~~~~~~~Pv~~ 398 (1021)
++||.|++.+.++.+++.+++.+.+.. .+++++.||||+++. | ++++++||||++...+ ..++++++++|+++
T Consensus 217 k~Gd~v~~~~~~~~~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~v~ 295 (595)
T TIGR01393 217 KPGDKIRFMSTGKEYEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPAKEPLPGFKEVKPMVF 295 (595)
T ss_pred ecCCEEEEecCCCeeEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCccCCCCEEECCCCccccCCCCCcCCCcEEE
Confidence 999999999989899999999666655 899999999998884 4 5668999999987765 36888999999999
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEe-----cChhHHHHHHHHHHhhcCeeeEEeCCeEEEEe
Q psy5021 399 ISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSG-----MGELHLEIIVDRILKENNIKTKISKPQVSYKE 473 (1021)
Q Consensus 399 ~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g-----~GelhLei~~~rL~~~~~v~v~~~~p~V~yrE 473 (1021)
++++|.+.+|.++|.+||++|++|||||.++ .||+|.++.| ||+|||||+++||+++||+++.+++|+|+|||
T Consensus 296 ~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~g~lG~lHlei~~erL~re~~~~v~~~~P~V~Yre 373 (595)
T TIGR01393 296 AGLYPIDTEDYEDLRDALEKLKLNDASLTYE--PESSPALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAPSVIYRV 373 (595)
T ss_pred EEEEECCcccHHHHHHHHHHHhccCCeEEEE--ecCCcccccccEEeeeeHHHHHHHHHHHHHHhCCeeEEecCEEEEEE
Confidence 9999999999999999999999999999997 4899988775 99999999999999999999999999999999
Q ss_pred ecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEE
Q psy5021 474 SIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKI 553 (1021)
Q Consensus 474 ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v 553 (1021)
|+++. + ++.|.+ | .|||+.|.
T Consensus 374 ti~~g---------------~-----------------~~~~~~--------------------------p-~~~p~~~~ 394 (595)
T TIGR01393 374 YLTNG---------------E-----------------VIEVDN--------------------------P-SDLPDPGK 394 (595)
T ss_pred EecCC---------------c-----------------EEEEEC--------------------------c-ccCCCccc
Confidence 98641 1 111221 2 37887652
Q ss_pred EEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecC-CeEE
Q psy5021 554 KVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHE-NFKI 632 (1021)
Q Consensus 554 ~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~ 632 (1021)
-|.||||||+++|.+|++|+|+||++|++|||++.+++..+ ++..
T Consensus 395 ----------------------------------~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~~~~~ 440 (595)
T TIGR01393 395 ----------------------------------IEHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDPNRVE 440 (595)
T ss_pred ----------------------------------ccceeCCeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCCCeEE
Confidence 27999999999999999999999999999999999999854 5899
Q ss_pred EEEEcchhhh-ccCCcccccceeeeeeeeec
Q psy5021 633 INSYIPLREL-FGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 633 i~a~~P~~e~-~~~~~~l~~~t~g~~g~~~~ 662 (1021)
|+|.+|++|+ ++|.++|+++|.|++.+...
T Consensus 441 i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~ 471 (595)
T TIGR01393 441 LIYEMPLAEIVYDFFDKLKSISRGYASFDYE 471 (595)
T ss_pred EEEEeccchhhhchhHHhhhhcCCEEEEEEE
Confidence 9999999997 99999999999999988765
No 19
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=4.3e-75 Score=684.12 Aligned_cols=444 Identities=27% Similarity=0.415 Sum_probs=401.7
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++||||+|+||+|||||||+++|++.+|.+...+... .+++|+.+.|+++|+|+.+...++.|+ ++.+++|||
T Consensus 2 ~~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~v~D~~~~E~erGiTi~~~~~~i~~~----~~~inliDT 75 (607)
T PRK10218 2 IEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQ--ERVMDSNDLEKERGITILAKNTAIKWN----DYRINIVDT 75 (607)
T ss_pred CCCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccc--eeeeccccccccCceEEEEEEEEEecC----CEEEEEEEC
Confidence 46899999999999999999999999988877654433 489999999999999999999999998 999999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeee
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPI 164 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 164 (1021)
|||.+|..++.++++.+|++|+|+|+.+|++.|++.+|+.+...++|.++|+||+|+++++++++++++.+.+..-
T Consensus 76 PG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l---- 151 (607)
T PRK10218 76 PGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNL---- 151 (607)
T ss_pred CCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhcc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999888888776310
Q ss_pred eeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHH
Q psy5021 165 NFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRK 244 (1021)
Q Consensus 165 ~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~ 244 (1021)
+ ...
T Consensus 152 --------------~-----------------------------------------------------~~~--------- 155 (607)
T PRK10218 152 --------------D-----------------------------------------------------ATD--------- 155 (607)
T ss_pred --------------C-----------------------------------------------------ccc---------
Confidence 0 000
Q ss_pred HHhcCceeEEEeccccCcc----------cHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceE
Q psy5021 245 LVLKNKIIPIMCGSSLKNK----------GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSL 314 (1021)
Q Consensus 245 ~~~~~~~~Pv~~~Sa~~~~----------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~ 314 (1021)
...-+|++++||++|. |+.+||++|.+++|+|... +++||.++|||++++++.|++
T Consensus 156 ---~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~-----------~~~Pl~~~V~k~~~d~~~G~i 221 (607)
T PRK10218 156 ---EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVD-----------LDGPFQMQISQLDYNSYVGVI 221 (607)
T ss_pred ---cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCC-----------CCCCeEEEEEeeEecCCCcEE
Confidence 0112789999999998 6999999999999999642 578999999999999999999
Q ss_pred EEEEEEeeEEecCCEEEeCCC-ce--eeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCCc
Q psy5021 315 SFIRIYSGFIKVGDLVYNSTK-KV--KEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIE 391 (1021)
Q Consensus 315 ~~~RV~sG~l~~gd~v~~~~~-~~--~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~~ 391 (1021)
+++||++|+|+.||.|++.+. ++ +++|++||.+.|.++.++++|.||||++++|++++.+|||||+...+..+++++
T Consensus 222 ~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~~l~~~~ 301 (607)
T PRK10218 222 GIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALS 301 (607)
T ss_pred EEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEecCCCcccCCCCC
Confidence 999999999999999998765 33 689999999999999999999999999999999999999999988888889999
Q ss_pred CCCCeEEEEEEeCC---CCCHHHHHH---HHHHHHH---cCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeee
Q psy5021 392 TPIPVISISIEPIF---KNDQEKLLN---ILQKFCK---EDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKT 462 (1021)
Q Consensus 392 ~~~Pv~~~~iep~~---~~d~~kl~~---~L~~L~~---eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v 462 (1021)
+++|++++++.|.+ ..|..|+.. +|++|.+ +||+|+++.+++|+|++|+|+|||||+|+++||+++ |+++
T Consensus 302 ~~~P~~~~~~~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre-g~e~ 380 (607)
T PRK10218 302 VDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRRE-GFEL 380 (607)
T ss_pred CCCCeEEEEEEeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHHhC-CceE
Confidence 99999999999999 778889854 5555555 999999999999999999999999999999999999 9999
Q ss_pred EEeCCeEEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhc
Q psy5021 463 KISKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINY 542 (1021)
Q Consensus 463 ~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~ 542 (1021)
.+++|+|+|||| . |
T Consensus 381 ~~~~P~V~yret--~--------------------------------g-------------------------------- 394 (607)
T PRK10218 381 AVSRPKVIFREI--D--------------------------------G-------------------------------- 394 (607)
T ss_pred EEeCCEEEEEEE--C--------------------------------C--------------------------------
Confidence 999999999998 0 0
Q ss_pred CcccccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEe
Q psy5021 543 GVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIIN 622 (1021)
Q Consensus 543 Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~ 622 (1021)
+.||||++++|.+|++|+|+||++|++|||+++
T Consensus 395 -----------------------------------------------~klEPi~~v~i~vP~e~~G~V~~~l~~RrG~~~ 427 (607)
T PRK10218 395 -----------------------------------------------RKQEPYENVTLDVEEQHQGSVMQALGERKGDLK 427 (607)
T ss_pred -----------------------------------------------EEeCCeEEEEEEechhhHHHHHHHHHhcCCEEe
Confidence 015999999999999999999999999999999
Q ss_pred eeeec-CCeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 623 TIIDH-ENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 623 ~~~~~-~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+++.. +++..|+|.+|++++++|..+|+++|.|.+.+...
T Consensus 428 ~m~~~~~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~ 468 (607)
T PRK10218 428 NMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYST 468 (607)
T ss_pred ccEECCCCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEE
Confidence 99985 46899999999999999999999999999877653
No 20
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=3.5e-74 Score=670.81 Aligned_cols=444 Identities=24% Similarity=0.410 Sum_probs=395.1
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccC-C---cccccChHHHhhhCceeeeeeeEEEeecccCceeE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHH-G---TTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~-~---~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i 79 (1021)
...++|||+|+||+|||||||+++|++.+|.+...|.+++ + .+++||++.|++||+|+.++...+.|+ ++++
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~----~~~i 82 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR----DCLV 82 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC----CeEE
Confidence 4678999999999999999999999999999999998873 3 488999999999999999999999999 9999
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
||||||||.+|..++.++++.+|++|+|+|++.|++.+++.+|+.+...++|+++|+||+|+.++++.++++++++.++.
T Consensus 83 nliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~ 162 (527)
T TIGR00503 83 NLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKI 162 (527)
T ss_pred EEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCC---eeec------cCChh----hHHHHHHHHHHHHHHhcCCCHHHHH
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENS---IIIK------NIDKD----QLSAFDYYNELMLETLSNNDEFFLE 226 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~---~~~~------~~~~~----~~~~~~~~~~~l~e~~~~~d~~l~e 226 (1021)
.+.+.++|++.+..|.|++|++.++.++|..+. .... +.|.. ..+..+++++++ |.+.+.+++
T Consensus 163 ~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l-e~~~~~~~~--- 238 (527)
T TIGR00503 163 NCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDEL-ELVEGASNE--- 238 (527)
T ss_pred CCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHH-HHHhhhccc---
Confidence 999999999999999999999999999996431 2111 11111 112334455555 666655543
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEe
Q psy5021 227 KYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIF 306 (1021)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~ 306 (1021)
++ .+++..+.++|||||||.+|.||++|||+|++++|+|.+++.. .......++|++++|||+.
T Consensus 239 ------~~--------~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~--~~~~~~~~~~~~~~VFK~~ 302 (527)
T TIGR00503 239 ------FD--------LAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSD--TRTVEPTEEKFSGFVFKIQ 302 (527)
T ss_pred ------cC--------HHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCC--ceecCCCCCCeeEEEEEEE
Confidence 22 3567789999999999999999999999999999999864321 0111225678999999999
Q ss_pred e--c-CCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCc
Q psy5021 307 H--D-PFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSE 383 (1021)
Q Consensus 307 ~--~-~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~ 383 (1021)
+ | +++|+++|+|||||+|++||.|++.++++++++.+++.++|++++++++|.||||+++.|++++++|||||+. .
T Consensus 303 ~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDtl~~~-~ 381 (527)
T TIGR00503 303 ANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTFTQG-E 381 (527)
T ss_pred eccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCCEecCC-C
Confidence 8 8 4899999999999999999999999999999999999999999999999999999999999999999999984 4
Q ss_pred cccccCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeE
Q psy5021 384 NIQLENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTK 463 (1021)
Q Consensus 384 ~~~~~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~ 463 (1021)
+..++++++|+|+++++|+|+++.|.+||.+||++|++||| +++.++++|+|++|+|||||||||+++||+++||+++.
T Consensus 382 ~~~~~~i~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~~ey~v~v~ 460 (527)
T TIGR00503 382 KIKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKEEYNVEAR 460 (527)
T ss_pred ceeecCCCCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHHHhCCeEE
Confidence 67788899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EeCCeEEEEe
Q psy5021 464 ISKPQVSYKE 473 (1021)
Q Consensus 464 ~~~p~V~yrE 473 (1021)
+++|+|+.--
T Consensus 461 ~~~~~v~~~r 470 (527)
T TIGR00503 461 YEPVNVATAR 470 (527)
T ss_pred EeCCCceEEE
Confidence 9999998553
No 21
>KOG0467|consensus
Probab=100.00 E-value=1.6e-74 Score=646.79 Aligned_cols=634 Identities=23% Similarity=0.345 Sum_probs=469.9
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+.|||||+++|+|||||||+++|+..+|.|+. ++.+.-+++|++++|+.||||++++.++...+ +|.+||||
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~--rlagkirfld~redeq~rgitmkss~is~~~~----~~~~nlid 78 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISS--RLAGKIRFLDTREDEQTRGITMKSSAISLLHK----DYLINLID 78 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEech--hhccceeeccccchhhhhceeeeccccccccC----ceEEEEec
Confidence 6789999999999999999999999999998876 33445789999999999999999999998888 99999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCC----H-------HHHHHH
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGAN----Y-------NNCIID 152 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~----~-------~~~~~~ 152 (1021)
+|||+||++++.+|.+.+|+|+++||+.+|++.||..+++|+...+...++|+||||+...+ + -+++++
T Consensus 79 spghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~ 158 (887)
T KOG0467|consen 79 SPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQ 158 (887)
T ss_pred CCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999976433 2 234445
Q ss_pred HHHHhCCc---eeeee----------e---ecccCCceeeEEe--------------------cccceeeeecCCC----
Q psy5021 153 IKKKFNCI---VLPIN----------F---NIGIEENYEGIVD--------------------IINKKSFFWKENS---- 192 (1021)
Q Consensus 153 i~~~l~~~---~~~~~----------~---p~~~~~~~~g~id--------------------~~~~~~~~~~~~~---- 192 (1021)
++..+|.- .+.++ + |-..+--|....| -.......|.+.+
T Consensus 159 vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~~~k 238 (887)
T KOG0467|consen 159 VNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYIDPK 238 (887)
T ss_pred hhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhccceeecch
Confidence 55444310 00000 0 0000000110000 0000112222111
Q ss_pred -------eeeccCChhhHHHHHHHHHHHHHH-hcCCCHHHHHHHHcC---CCCHHHHHHHHHHHHhcCceeEEEeccccC
Q psy5021 193 -------IIIKNIDKDQLSAFDYYNELMLET-LSNNDEFFLEKYINN---NYSINDIKNSIRKLVLKNKIIPIMCGSSLK 261 (1021)
Q Consensus 193 -------~~~~~~~~~~~~~~~~~~~~l~e~-~~~~d~~l~e~~l~~---~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~ 261 (1021)
.......+-+.+...+..|++++. +...|-+-+++.... .+.+++++..+... .+.|+|+
T Consensus 239 tk~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~~i--m~~wLPl------- 309 (887)
T KOG0467|consen 239 TKRICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLDAI--MSTWLPL------- 309 (887)
T ss_pred hhhhhcccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHHHH--HHhhccc-------
Confidence 001111223344555667788884 444566667777765 56667766333322 2578887
Q ss_pred cccHHHHHHHHHHhCCCCccccccC------C-c---------ccccc-CCCceEEEEEEEeecC-----CCceEEEEEE
Q psy5021 262 NKGIEFLLNSICEYLPSPYDVDFKN------N-D---------YNINL-NSNKFVSLVFKIFHDP-----FLGSLSFIRI 319 (1021)
Q Consensus 262 ~~Gi~~Ll~~i~~~lP~p~~~~~~~------~-~---------~~~~~-~~~p~~~~V~k~~~~~-----~~g~~~~~RV 319 (1021)
-+..+-+.+.++|+|.+.+..+ . + ....| +++|..+||.|+...+ ....++|+||
T Consensus 310 ---s~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ari 386 (887)
T KOG0467|consen 310 ---SDAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAFARI 386 (887)
T ss_pred ---ccchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhheeeeee
Confidence 2466677778999988754322 0 0 01234 7899999999998544 3236899999
Q ss_pred EeeEEecCCEEEeCCC-------ceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCcccc-ccCCc
Q psy5021 320 YSGFIKVGDLVYNSTK-------KVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQ-LENIE 391 (1021)
Q Consensus 320 ~sG~l~~gd~v~~~~~-------~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~-~~~~~ 391 (1021)
||||++.||.+|..+. -...+|.++|.++|+..+|.+++++|++++|.|-+......|||+.....+ +....
T Consensus 387 ~sgTlr~g~~v~v~~pd~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~~~f 466 (887)
T KOG0467|consen 387 FSGTLRVGQVVYVLGPDPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLVVNF 466 (887)
T ss_pred ccCceeeccEeeecCCCCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceecccCCCcceeeeee
Confidence 9999999999996544 245689999999999999999999999999999444778899999744333 33233
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhc-CeeeEEeCCeEE
Q psy5021 392 TPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKEN-NIKTKISKPQVS 470 (1021)
Q Consensus 392 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~-~v~v~~~~p~V~ 470 (1021)
..+|.++++|+|.+|.|+++|.++|+.|++-||++.+.. +++||+++...||+|||.|+.+|++ | ++++++|+|.|+
T Consensus 467 ~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v-~~~gEhvl~~aGevhlerc~kDL~e-fa~i~i~vSeP~vp 544 (887)
T KOG0467|consen 467 QITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRV-EENGEHVLVTAGEVHLERCLKDLKE-FAKIEISVSEPLVP 544 (887)
T ss_pred eeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHH-hhccceeeeeccHHHHHHHHHHHhh-hhceEEEecCCccc
Confidence 349999999999999999999999999999999999985 6899999999999999999999999 7 999999999999
Q ss_pred EEeecccceeeee--EEEecCC--CCceeEEEEEEEeecCCC--------------------------------------
Q psy5021 471 YKESIKKIVTQEG--KYIKQSG--GKGQYGHVVIRIEPISLE-------------------------------------- 508 (1021)
Q Consensus 471 yrEti~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~P~~~~-------------------------------------- 508 (1021)
||||+.+.+...- .+.++.. ..++ -.+.+++.|+..-
T Consensus 545 frET~~e~s~l~~~~~I~~~~~~~~~~~-~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~~~e~ls 623 (887)
T KOG0467|consen 545 FRETIIEDSDLLANLSIGQETKCLPRGQ-LKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGSFEENLS 623 (887)
T ss_pred hhhhccccchhhhhhhcCcccccccccc-eeEEeeecccccceeccccccchhccchhcccccccccccccccccccccc
Confidence 9999955442210 0000000 0000 1223333333210
Q ss_pred --------------------------------CCCCceEEecc-------ccCC-CchhhHHHHHHHHHHHHhcCccccc
Q psy5021 509 --------------------------------NKENFIFKSEI-------IGGS-IPKEFIPAIEKGIMNQINYGVVLGY 548 (1021)
Q Consensus 509 --------------------------------~~~~~~f~~~~-------~~~~-~~~~~~~~i~~g~~~~~~~Gpl~g~ 548 (1021)
-|.++.|...- .+.. +++ +-+++..||+.++..||||.|
T Consensus 624 ~~~s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~-l~~~ivsgfql~~~sGPlc~E 702 (887)
T KOG0467|consen 624 LLISLERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVAR-LSESIVSGFQLATSSGPLCNE 702 (887)
T ss_pred HHHHHHHHhhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHH-HHHHHhhhHhhhhccCccccc
Confidence 00011111000 0000 112 558899999999999999999
Q ss_pred ceEEEEEEEEeeeeccCCC---CHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeee
Q psy5021 549 PVIKIKVFLVNGSFHSVDS---SEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTII 625 (1021)
Q Consensus 549 pv~~v~v~l~~~~~~~~~s---~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~ 625 (1021)
|+.|++|.+..+...+..+ ..++...|++.+|++|++...|||+.|||.|+|++..|++|++|++|++|+|+|++++
T Consensus 703 p~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVLsEe 782 (887)
T KOG0467|consen 703 PMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVLSEE 782 (887)
T ss_pred CcccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhcchhhhhh
Confidence 9999999998855544333 1245567999999999999999999999999999999999999999999999999999
Q ss_pred ecCC--eEEEEEEcchhhhccCCcccccceeeeeee
Q psy5021 626 DHEN--FKIINSYIPLRELFGYSTDLRSNTKGTIGH 659 (1021)
Q Consensus 626 ~~~~--~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~ 659 (1021)
+.+| .|.|+|++|+.|+|||++++|..|+|.+..
T Consensus 783 m~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~p 818 (887)
T KOG0467|consen 783 MKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASP 818 (887)
T ss_pred hhCCCCcEEEEEEeeeeccccHHHHHhhccccccch
Confidence 8875 599999999999999999999999998643
No 22
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=7.7e-72 Score=596.24 Aligned_cols=459 Identities=28% Similarity=0.422 Sum_probs=403.4
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~li 82 (1021)
+.++|||++|++|+|||||||+++|+..+|.+... +-...++|+++.|+||||||+.+.+++.|+. +++.|.+|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~R---em~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlI 81 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSER---EMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLI 81 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChH---HHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEc
Confidence 78999999999999999999999999999887652 3346899999999999999999999999997 5688999999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCcee
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVL 162 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~ 162 (1021)
|||||+||+.++.++|..|+||||||||+.|+++||......+...++-+|.|+||+|++.++++++.+++.+.+|.++
T Consensus 82 DTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~- 160 (603)
T COG0481 82 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA- 160 (603)
T ss_pred CCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998642
Q ss_pred eeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHH
Q psy5021 163 PINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSI 242 (1021)
Q Consensus 163 ~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~ 242 (1021)
.+
T Consensus 161 -------------------------------------------------------------------------~d----- 162 (603)
T COG0481 161 -------------------------------------------------------------------------SD----- 162 (603)
T ss_pred -------------------------------------------------------------------------ch-----
Confidence 01
Q ss_pred HHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEee
Q psy5021 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSG 322 (1021)
Q Consensus 243 ~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG 322 (1021)
.+.+||++|.||+++|++|++.+|+|... +++|+.|++|..++|+++|.++++||+.|
T Consensus 163 -----------av~~SAKtG~gI~~iLe~Iv~~iP~P~g~-----------~~~pLkALifDS~yD~Y~GVv~~vRi~dG 220 (603)
T COG0481 163 -----------AVLVSAKTGIGIEDVLEAIVEKIPPPKGD-----------PDAPLKALIFDSWYDNYLGVVVLVRIFDG 220 (603)
T ss_pred -----------heeEecccCCCHHHHHHHHHhhCCCCCCC-----------CCCcceEEEEeccccccceEEEEEEEeec
Confidence 45679999999999999999999999865 78999999999999999999999999999
Q ss_pred EEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE-ecCC---ccccCCeeccCCc--cccccCCcCCCCe
Q psy5021 323 FIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI-VGLK---ESSTGDTLCSLSE--NIQLENIETPIPV 396 (1021)
Q Consensus 323 ~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i-~gl~---~~~~gdtl~~~~~--~~~~~~~~~~~Pv 396 (1021)
++++||++....++++..|.++..+.. ...+.+++.||+++.+ +|++ +++.|||++.... ..++++++-..|+
T Consensus 221 ~ik~gdki~~m~tg~~y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~~~P~ 299 (603)
T COG0481 221 TLKKGDKIRMMSTGKEYEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEVKPM 299 (603)
T ss_pred eecCCCEEEEEecCCEEEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCCCCCcCCce
Confidence 999999999999999999998876665 6788999999999988 5665 4789999985443 3567888889999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEE-----ecChhHHHHHHHHHHhhcCeeeEEeCCeEEE
Q psy5021 397 ISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILS-----GMGELHLEIIVDRILKENNIKTKISKPQVSY 471 (1021)
Q Consensus 397 ~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~-----g~GelhLei~~~rL~~~~~v~v~~~~p~V~y 471 (1021)
+++.+.|.+..|.+.|.+||.+|..+|.+|.++ +||.+.+-. .+|-|||||+++||+|||++++....|.|.|
T Consensus 300 Vf~GlyPid~~dye~LrdAleKL~LNDasl~~E--~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf~ldlI~TaPsV~Y 377 (603)
T COG0481 300 VFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVY 377 (603)
T ss_pred EEEeecccChhHHHHHHHHHHhcccccceeeec--cccchhccCceeehhhhHHHHHHHHHHHHHhhCcceEecCCceEE
Confidence 999999999999999999999999999999997 577765543 4799999999999999999999999999999
Q ss_pred EeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceE
Q psy5021 472 KESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVI 551 (1021)
Q Consensus 472 rEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~ 551 (1021)
+-..+... ...--.|.. +|.
T Consensus 378 ~v~~~~g~------------------~~~i~NPs~-----------------~P~------------------------- 397 (603)
T COG0481 378 KVELTDGE------------------EIEVDNPSD-----------------LPD------------------------- 397 (603)
T ss_pred EEEEcCCc------------------EEEecChHh-----------------CCC-------------------------
Confidence 96544311 100011211 111
Q ss_pred EEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecC-Ce
Q psy5021 552 KIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHE-NF 630 (1021)
Q Consensus 552 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~ 630 (1021)
.+. --.+.||+.+++|.+|+||+|.||..++.+||...+++.-+ .+
T Consensus 398 ---------------~~~------------------I~~i~EP~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl~~~r 444 (603)
T COG0481 398 ---------------PNK------------------IEEIEEPYVKATIITPQEYLGNVMELCQEKRGIQIDMEYLDQNR 444 (603)
T ss_pred ---------------hhh------------------hheeeCceeEEEEeCcHHHHHHHHHHHHHhcCceecceEecCce
Confidence 000 01567999999999999999999999999999999999877 78
Q ss_pred EEEEEEcchhhh-ccCCcccccceeeeeeeeec
Q psy5021 631 KIINSYIPLREL-FGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 631 ~~i~a~~P~~e~-~~~~~~l~~~t~g~~g~~~~ 662 (1021)
..+...+|++|. +.|.+.|+|.|.|++++.-.
T Consensus 445 v~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe 477 (603)
T COG0481 445 VMLTYELPLAEIVFDFFDKLKSISKGYASFDYE 477 (603)
T ss_pred EEEEEecchHHHHHHHhHhhhccccceeeeccc
Confidence 999999999999 68999999999999988654
No 23
>KOG0462|consensus
Probab=100.00 E-value=3.2e-71 Score=601.69 Aligned_cols=459 Identities=27% Similarity=0.423 Sum_probs=394.1
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
|.++|||++|++|+|||||||+++|+..+|.+... ....+++|..+.|+||||||++...++.|.. ++.|.+|+||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~---~~q~q~LDkl~vERERGITIkaQtasify~~-~~~ylLNLID 131 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNN---IGQEQVLDKLQVERERGITIKAQTASIFYKD-GQSYLLNLID 131 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCC---CchhhhhhhhhhhhhcCcEEEeeeeEEEEEc-CCceEEEeec
Confidence 56899999999999999999999999999977652 2347899999999999999999999999995 6679999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||+||+.|+.+++..||||||||||++|+++||...+..+.+.++.+|.|+||+|++.++++++..++.+.++..+
T Consensus 132 TPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~-- 209 (650)
T KOG0462|consen 132 TPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPP-- 209 (650)
T ss_pred CCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998886431
Q ss_pred eeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIR 243 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~ 243 (1021)
T Consensus 210 -------------------------------------------------------------------------------- 209 (650)
T KOG0462|consen 210 -------------------------------------------------------------------------------- 209 (650)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeE
Q psy5021 244 KLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGF 323 (1021)
Q Consensus 244 ~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~ 323 (1021)
-+++.+||++|.|++++|++|++.+|+|... .++||.+++|.+++|+++|.++++||..|.
T Consensus 210 --------~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~-----------~d~plr~Lifds~yD~y~G~I~~vrv~~G~ 270 (650)
T KOG0462|consen 210 --------AEVIYVSAKTGLNVEELLEAIIRRVPPPKGI-----------RDAPLRMLIFDSEYDEYRGVIALVRVVDGV 270 (650)
T ss_pred --------cceEEEEeccCccHHHHHHHHHhhCCCCCCC-----------CCcchHHHhhhhhhhhhcceEEEEEEeeee
Confidence 1378899999999999999999999999875 689999999999999999999999999999
Q ss_pred EecCCEEEeCCCceeeEeceEEEe--ecCCeeccccccCCCEEEEec-CCccccCCeeccCC---ccccccCCcCCCCeE
Q psy5021 324 IKVGDLVYNSTKKVKEKIFRILRM--FANSKKDINDAHFGDIVVIVG-LKESSTGDTLCSLS---ENIQLENIETPIPVI 397 (1021)
Q Consensus 324 l~~gd~v~~~~~~~~~~i~~i~~~--~g~~~~~v~~a~aGdIv~i~g-l~~~~~gdtl~~~~---~~~~~~~~~~~~Pv~ 397 (1021)
+++||+|....+++...++.+-.| ..-...+++...+|+|++-.+ +++.+.|||++... ....++..+...|++
T Consensus 271 vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~~~v~tl~~~~~~~pMv 350 (650)
T KOG0462|consen 271 VRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVTKAVETLPGFEPTKPMV 350 (650)
T ss_pred eecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEecccccccccccceeeecccCcccCcCCCCCCCcceE
Confidence 999999998887766655555333 333444555566666666655 77899999999866 234567777889999
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCC----cEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEEEe
Q psy5021 398 SISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTG----ETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKE 473 (1021)
Q Consensus 398 ~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etg----e~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~yrE 473 (1021)
++...|.+.+|...|.+++.+|+.+|+++.+..+ .++ -|.++++|+|||||+.+||++|||.++.+++|.|+||-
T Consensus 351 Fvg~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~-~s~aLg~gwr~gflG~LHm~Vf~erle~Eyg~elivt~PtV~Yr~ 429 (650)
T KOG0462|consen 351 FVGLFPLDGSDYETLRDAIERLVLNDESVTVIKE-SSGALGQGWRLGFLGLLHMEVFIERLEREYGAELIVTPPTVPYRV 429 (650)
T ss_pred EeccccCccchhhhHHHHHHHHhcccccceeeec-CCcccccceEeeccceeeHHHHHHHHHHhcCceeeecCCcceEEE
Confidence 9999999999999999999999999999999864 444 37899999999999999999999999999999999995
Q ss_pred ecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEE
Q psy5021 474 SIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKI 553 (1021)
Q Consensus 474 ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v 553 (1021)
-..+..+ ..-..|. .|.+.
T Consensus 430 ~~~~~~~------------------~~i~np~--------~fp~~----------------------------------- 448 (650)
T KOG0462|consen 430 VYSNGDE------------------ILISNPA--------LFPDP----------------------------------- 448 (650)
T ss_pred EecCCce------------------eeecChh--------hCCCc-----------------------------------
Confidence 4332110 0111221 11110
Q ss_pred EEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeec-CCeEE
Q psy5021 554 KVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDH-ENFKI 632 (1021)
Q Consensus 554 ~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~-~~~~~ 632 (1021)
+. -..++||+...+|.+|+||+|.|+..++.|||...++... +.+..
T Consensus 449 -------------~~-------------------v~~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~nr~~ 496 (650)
T KOG0462|consen 449 -------------SD-------------------VKEFLEPYVEATIITPDEYVGAVIELCSERRGEQKDMTYIDGNRVM 496 (650)
T ss_pred -------------cc-------------------chhhcCceEEEEEECcHHHHHHHHHHHHHhhhheecceeccCCeEE
Confidence 00 1146799999999999999999999999999999999877 46799
Q ss_pred EEEEcchhhhcc-CCcccccceeeeeeeee
Q psy5021 633 INSYIPLRELFG-YSTDLRSNTKGTIGHVD 661 (1021)
Q Consensus 633 i~a~~P~~e~~~-~~~~l~~~t~g~~g~~~ 661 (1021)
++..+|++++.+ |.+.|++.|.|++.+.-
T Consensus 497 lky~lPl~elv~df~~~lks~tsGyAs~dy 526 (650)
T KOG0462|consen 497 LKYQLPLRELVGDFFDRLKSLTSGYASFDY 526 (650)
T ss_pred EEEecChHHHHHHHHHHHhccccceeEEee
Confidence 999999999988 99999999999988754
No 24
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-66 Score=551.94 Aligned_cols=438 Identities=29% Similarity=0.448 Sum_probs=395.2
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
..+|||||++|+|||||||++.||.++|.....+.+. .++||+...|+||||||-+....+.|+ +++||++|||
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~--ERvMDSnDlEkERGITILaKnTav~~~----~~~INIvDTP 76 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVA--ERVMDSNDLEKERGITILAKNTAVNYN----GTRINIVDTP 76 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchh--hhhcCccchhhhcCcEEEeccceeecC----CeEEEEecCC
Confidence 5799999999999999999999999999988755553 589999999999999999999999999 9999999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeee
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN 165 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 165 (1021)
||.||.+++++.+...|+++|+|||.+|..+||+.+++.+.+.+++.|+|+||+|+++++++++++++.+.|-
T Consensus 77 GHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~------- 149 (603)
T COG1217 77 GHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFV------- 149 (603)
T ss_pred CcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999998877651
Q ss_pred eecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHH
Q psy5021 166 FNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKL 245 (1021)
Q Consensus 166 ~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~ 245 (1021)
.+...| ++
T Consensus 150 --------------------------------------------------~L~A~d--------------eQ-------- 157 (603)
T COG1217 150 --------------------------------------------------ELGATD--------------EQ-------- 157 (603)
T ss_pred --------------------------------------------------HhCCCh--------------hh--------
Confidence 011111 11
Q ss_pred HhcCceeEEEeccccCcc----------cHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEE
Q psy5021 246 VLKNKIIPIMCGSSLKNK----------GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLS 315 (1021)
Q Consensus 246 ~~~~~~~Pv~~~Sa~~~~----------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~ 315 (1021)
--+|++..||+.|. ..++|++.|.+|+|+|... .++||.++|+...++++.|++.
T Consensus 158 ----LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~-----------~d~PlQ~qvt~Ldyn~y~GrIg 222 (603)
T COG1217 158 ----LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGD-----------LDEPLQMQVTQLDYNSYVGRIG 222 (603)
T ss_pred ----CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCC-----------CCCCeEEEEEeeccccccceeE
Confidence 12678888888764 2679999999999999864 6899999999999999999999
Q ss_pred EEEEEeeEEecCCEEEeCCCc---eeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCCcC
Q psy5021 316 FIRIYSGFIKVGDLVYNSTKK---VKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIET 392 (1021)
Q Consensus 316 ~~RV~sG~l~~gd~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~~~ 392 (1021)
.+||++|++++|+.|.....+ +..||.+++-+.|-++.++++|.||||++|+|+.++..|||+|++..+..++.+.+
T Consensus 223 igRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~d~~~~~aLp~l~i 302 (603)
T COG1217 223 IGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDPDNPEALPALSV 302 (603)
T ss_pred EEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEcCcccccccccccCCCCccCCCCccc
Confidence 999999999999999865443 45689999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEEeCCCC---------CHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeE
Q psy5021 393 PIPVISISIEPIFKN---------DQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTK 463 (1021)
Q Consensus 393 ~~Pv~~~~iep~~~~---------d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~ 463 (1021)
-+|.+++.+...++. -..++.+.|.+-.+.+-+|+++..++-..|.++|.|||||-|+++.+||| |.|+.
T Consensus 303 DePTlsMtf~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MRRE-GfEl~ 381 (603)
T COG1217 303 DEPTLSMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMRRE-GFELQ 381 (603)
T ss_pred CCCceEEEEEecCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHHhhhc-ceEEE
Confidence 999999999877652 25789999999999999999997666688999999999999999999999 99999
Q ss_pred EeCCeEEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcC
Q psy5021 464 ISKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYG 543 (1021)
Q Consensus 464 ~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~G 543 (1021)
+|.|+|.||| +.+
T Consensus 382 VsrP~Vi~ke-idG------------------------------------------------------------------ 394 (603)
T COG1217 382 VSRPEVIIKE-IDG------------------------------------------------------------------ 394 (603)
T ss_pred ecCceEEEEe-cCC------------------------------------------------------------------
Confidence 9999999998 321
Q ss_pred cccccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEee
Q psy5021 544 VVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINT 623 (1021)
Q Consensus 544 pl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~ 623 (1021)
..+||+-.+.|.||++|.|.|+..|..|+|...+
T Consensus 395 ----------------------------------------------~~~EP~E~v~iDv~ee~~G~Vie~lg~RKgem~~ 428 (603)
T COG1217 395 ----------------------------------------------VKCEPFEEVTIDVPEEHQGAVIEKLGERKGEMKD 428 (603)
T ss_pred ----------------------------------------------cCcCcceeEEecCchhhhhHHHHHHhhhhHhHhh
Confidence 2348999999999999999999999999999999
Q ss_pred eeecC-CeEEEEEEcchhhhccCCcccccceeeee
Q psy5021 624 IIDHE-NFKIINSYIPLRELFGYSTDLRSNTKGTI 657 (1021)
Q Consensus 624 ~~~~~-~~~~i~a~~P~~e~~~~~~~l~~~t~g~~ 657 (1021)
+.+.+ |+.++...+|...+.||.+++-+.|.|.+
T Consensus 429 M~~~g~G~~Rlef~iPaRGLIGfrteFlt~TrG~G 463 (603)
T COG1217 429 MAPDGKGRVRLEFVIPARGLIGFRTEFLTMTRGTG 463 (603)
T ss_pred cccCCCCeEEEEEEccCcceeccchheeeccccce
Confidence 99875 78999999999999999999999999985
No 25
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-65 Score=545.59 Aligned_cols=364 Identities=32% Similarity=0.506 Sum_probs=331.9
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccc---------------cccccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEI---------------YGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~---------------~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
..++..+.||+|||||||+++|+...+.+ +...+...|.||++++||+||+|++.++..|+++.+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 45678899999999999999998544333 234445667899999999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCC-------CcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-------PMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELL 786 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g-------~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~ 786 (1021)
.++++|+|||++|+++|+.++++||+|||||||+.+ ..+||+||+.+++.+|+.++||++||||+++ ++++|
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf 165 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERF 165 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHH
Confidence 999999999999999999999999999999999998 6799999999999999999999999999996 67899
Q ss_pred HHHHHHHHHhhhccccCCCceEEEEecccccccCCCCC-ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCC
Q psy5021 787 DLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDN-QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISG 865 (1021)
Q Consensus 787 ~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~-~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g 865 (1021)
+++++++..+++.+||+.++++|+|+||++|.|..... ...||..++|+++|+. +..|.++.++|||++|+++|++.|
T Consensus 166 ~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd~-~~~p~~~~d~Plr~pI~~v~~i~~ 244 (428)
T COG5256 166 EEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALDQ-LEPPERPLDKPLRLPIQDVYSISG 244 (428)
T ss_pred HHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHhc-cCCCCCCCCCCeEeEeeeEEEecC
Confidence 99999999999999999889999999999997765443 6789999999999994 777889999999999999999999
Q ss_pred ceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCC-ccce
Q psy5021 866 RGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS-IKSY 944 (1021)
Q Consensus 866 ~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~ 944 (1021)
.|+|..|+|++|.|++||+|.+.|.+ ...+|+||++|+++.+.|.+||+|++++++++.+||++|||+++++. +..+
T Consensus 245 ~gtv~vGrVEsG~i~~g~~v~~~p~~--~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n~~t~s 322 (428)
T COG5256 245 IGTVPVGRVESGVIKPGQKVTFMPAG--VVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDNPPTVS 322 (428)
T ss_pred CceEEEEEEeeeeeccCCEEEEecCc--ceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCCCCcccc
Confidence 99999999999999999999999865 56899999999999999999999999999999999999999998774 5667
Q ss_pred eeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeee-cc------------CCCcccccCCCeEEEEEEEceeeec
Q psy5021 945 NIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGIC-KL------------PENVEMVLPGDNIKLNVTLLSSIAI 1011 (1021)
Q Consensus 945 ~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~-~~------------~~~~~~l~~g~~~~v~~~~~~pi~~ 1011 (1021)
.+|.|++.++.|+ .+|.+||+|++|+|++.++|++ ++ .+++.++++|+.++|.+++++|+|+
T Consensus 323 ~~f~a~i~vl~~p-----~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~~kP~~~ 397 (428)
T COG5256 323 PEFTAQIIVLWHP-----GIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEPEKPLCL 397 (428)
T ss_pred cceEEEEEEEecC-----ccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEEecCceEe
Confidence 8999999999998 5999999999999999999765 22 2468999999999999999999999
Q ss_pred ccC------CeEEEeC
Q psy5021 1012 EIG------LRFAIRE 1021 (1021)
Q Consensus 1012 ~~~------~rf~lr~ 1021 (1021)
+.. +||+|||
T Consensus 398 e~~~~~~~Lgrfalrd 413 (428)
T COG5256 398 EKVSEIPQLGRFALRD 413 (428)
T ss_pred eecccCCccceEEEEe
Confidence 865 7999997
No 26
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-65 Score=543.07 Aligned_cols=439 Identities=26% Similarity=0.448 Sum_probs=381.4
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCC----cccccChHHHhhhCceeeeeeeEEEeecccCceeE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHG----TTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~----~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i 79 (1021)
...+.|++|||.|+|||||||++.||...|+|..+|.|... .+.+||++.|++|||++.+++..|.|. ++.+
T Consensus 8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~----~~~i 83 (528)
T COG4108 8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA----DCLV 83 (528)
T ss_pred HHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC----CeEE
Confidence 46788999999999999999999999999999999988643 678999999999999999999999999 9999
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
||+|||||.||+..+.+.|..+|.||+||||..|+++||+.+++-|+.+++|++-|+||+||.+.++-+.+++|.+.|+.
T Consensus 84 NLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i 163 (528)
T COG4108 84 NLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGI 163 (528)
T ss_pred eccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCCe--e-----ec--cCChhhHH-----HHHHHHH---HHHHHhcCCCH
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENSI--I-----IK--NIDKDQLS-----AFDYYNE---LMLETLSNNDE 222 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~--~-----~~--~~~~~~~~-----~~~~~~~---~l~e~~~~~d~ 222 (1021)
.+.|++|||+.+..|.|++|+.+.....|.++.. . .. +.|+ ... ...++++ -+.++..++|
T Consensus 164 ~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~-~~~~l~~~~~~~~~ee~EL~~~a~~~Fd- 241 (528)
T COG4108 164 QCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPE-LDALLGEDLAEQLREELELVQGAGNEFD- 241 (528)
T ss_pred ceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChh-HHhhhchHHHHHHHHHHHHHHhhccccC-
Confidence 9999999999999999999999999998976531 0 01 1111 100 0111111 1111222222
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEE
Q psy5021 223 FFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLV 302 (1021)
Q Consensus 223 ~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V 302 (1021)
..+++.+...|||+|||++|.||+.+|+.++++.|+|..++... ..+...+..+.++|
T Consensus 242 --------------------~~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~--~~v~p~e~kfsGFV 299 (528)
T COG4108 242 --------------------LEAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADT--REVEPTEDKFSGFV 299 (528)
T ss_pred --------------------HHHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCc--CcccCCCCccceEE
Confidence 23456788999999999999999999999999999998764311 11122445699999
Q ss_pred EEEe--ecCC-CceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeec
Q psy5021 303 FKIF--HDPF-LGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLC 379 (1021)
Q Consensus 303 ~k~~--~~~~-~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~ 379 (1021)
||++ .||. +.++||.||.||.+.+|+++...++++..+++.-..+++++++.+++|.||||+++.+-..++.|||++
T Consensus 300 FKIQANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t 379 (528)
T COG4108 300 FKIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFT 379 (528)
T ss_pred EEEEcCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCCceeecceee
Confidence 9998 4664 789999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred cCCccccccCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcC
Q psy5021 380 SLSENIQLENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENN 459 (1021)
Q Consensus 380 ~~~~~~~~~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~ 459 (1021)
.. ....+++++...|-++..|..+++....+|.+||++|++|-. +++.....+++.+++..|.||+||+.+||+.||+
T Consensus 380 ~G-e~l~f~giP~FaPE~frrvr~kd~~K~Kql~Kgl~QL~eEGa-vQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY~ 457 (528)
T COG4108 380 EG-EKLKFTGIPNFAPELFRRVRLKDPLKQKQLKKGLEQLAEEGA-VQVFKPLDGNDLILGAVGQLQFEVVQARLKNEYN 457 (528)
T ss_pred cC-ceeeecCCCCCCHHHHHHHhcCChHHHHHHHHHHHHHhhcCe-eEEEecCCCCCceEEeeeeeehHHHHHHHHhhhC
Confidence 87 778889999999999999999999999999999999999986 6666677889999999999999999999999999
Q ss_pred eeeEEeCCeEEEE
Q psy5021 460 IKTKISKPQVSYK 472 (1021)
Q Consensus 460 v~v~~~~p~V~yr 472 (1021)
+++.+.+..++..
T Consensus 458 ve~~~e~~~~~~a 470 (528)
T COG4108 458 VEAVFEPVNFSTA 470 (528)
T ss_pred CeEEEeeccceEE
Confidence 9999987665544
No 27
>KOG0460|consensus
Probab=100.00 E-value=5.3e-65 Score=522.09 Aligned_cols=376 Identities=65% Similarity=1.054 Sum_probs=355.5
Q ss_pred CCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh
Q psy5021 645 YSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH 724 (1021)
Q Consensus 645 ~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~ 724 (1021)
|..+.....+|..||++||||||.-++++.....+...+..+.-.|+.++|+.||+||+..++.|++.++.|.-+|+|||
T Consensus 48 f~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGH 127 (449)
T KOG0460|consen 48 FVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGH 127 (449)
T ss_pred cccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCch
Confidence 45566678999999999999999999998766666666666777899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+|++||+.++.+.|++||||.|++|+.+||+||+.++++.|+++++|.+||.|++++++.++-++-+++++|..+||++
T Consensus 128 ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 128 ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999878888989999999999999999
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCE
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEE 884 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~ 884 (1021)
++.|+|..||+..+++.++ +.+...+..|++++++++|.|.|..++||.++|.++|+++|.|||++|++++|.|++||+
T Consensus 208 d~~PvI~GSAL~ALeg~~p-eig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e 286 (449)
T KOG0460|consen 208 DNTPVIRGSALCALEGRQP-EIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDE 286 (449)
T ss_pred CCCCeeecchhhhhcCCCc-cccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccccCCE
Confidence 9999999999998877433 345567999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCcc
Q psy5021 885 IEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTP 964 (1021)
Q Consensus 885 v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~ 964 (1021)
+.|...++.++..|.+|++++..+++|.|||++|+.|.+++.++++||+|+|.++.....+.|+|++++|+...|+.++|
T Consensus 287 ~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGsvk~~~k~ea~~YiLsk~EGGR~~p 366 (449)
T KOG0460|consen 287 VEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGSVKPHNKFEAQLYILSKEEGGRHKP 366 (449)
T ss_pred EEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccEEecCCcccccceeeEEEEEEEhhhCCCccc
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 965 FFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 965 i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+..+|+|.+|+.|..+++++.+....+.+.|||.+.+.+.+.+|+++++|+||.|||
T Consensus 367 f~s~y~~q~fs~TwD~~~~v~~~~~~~mvMPGe~~~~~~~Li~pm~le~GqrFtiRe 423 (449)
T KOG0460|consen 367 FVSGYRPQMFSRTWDVTGRVDIPPEKEMVMPGENVKVEVTLIRPMPLEKGQRFTLRE 423 (449)
T ss_pred hhhccchhheeeecccceEEEccChHhcccCCCCeEEEEEEecccccCCCceeeEcc
Confidence 999999999999999999999888789999999999999999999999999999997
No 28
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-63 Score=502.82 Aligned_cols=369 Identities=73% Similarity=1.128 Sum_probs=348.1
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
....+|..||+|||||||..+|+.............+...|+.++|++||+||+..+..+++.++.+..+|+|||.+|++
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK 90 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK 90 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence 34689999999999999999999876666666667777789999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEE
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 809 (1021)
||+.++.++|++||||+|++|+.+||+||+.+++..|+|.++|++||+|++++++..+.++.++.++|..++|.+++.|+
T Consensus 91 NMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pi 170 (394)
T COG0050 91 NMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPI 170 (394)
T ss_pred HHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcce
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEee
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVG 889 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p 889 (1021)
+..||+...++... ....+.+|++++++++|.|.+..++||+++|.++|++.|.|+|++|+|++|.|++|+++.+..
T Consensus 171 i~gSal~ale~~~~---~~~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG 247 (394)
T COG0050 171 IRGSALKALEGDAK---WEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVG 247 (394)
T ss_pred eechhhhhhcCCcc---hHHHHHHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEec
Confidence 99999987665433 224689999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccccCCC
Q psy5021 890 YKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFNGY 969 (1021)
Q Consensus 890 ~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~ 969 (1021)
.+...+..|.+++++++..+++.|||+|++.|.+++++++.||+||+.++++.+..+|+|++++|++..++.++|++.||
T Consensus 248 ~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgsi~ph~kfeaevyvL~keeggrhtpff~~y 327 (394)
T COG0050 248 IKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGSIKPHTKFEAEVYVLSKEEGGRHTPFFHGY 327 (394)
T ss_pred ccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceEeecCCcccccceeeEEEEEEecccCCCCCCcccCc
Confidence 77777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 970 KPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 970 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+|.+|++++.+++.+++.+..+.+.|||++.+.+++.+||+++.|.||.+||
T Consensus 328 rpqfyfRttDVtg~i~l~eg~emvmpgdnv~~~veLi~pia~e~G~rFaIre 379 (394)
T COG0050 328 RPQFYFRTTDVTGAITLPEGVEMVMPGDNVKMVVELIHPIAMEEGLRFAIRE 379 (394)
T ss_pred cceeEEEeeeeeeeEeccCCcceecCCCceEEEEEEeeeeecCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999999996
No 29
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=8.8e-60 Score=540.85 Aligned_cols=376 Identities=65% Similarity=1.065 Sum_probs=333.0
Q ss_pred CCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh
Q psy5021 645 YSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH 724 (1021)
Q Consensus 645 ~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~ 724 (1021)
|...-..++++++||+|||||||+++|++.....+......+..+|+.++|+++|+|++.....|++++++++|+|||||
T Consensus 55 ~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh 134 (447)
T PLN03127 55 FTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGH 134 (447)
T ss_pred hhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCc
Confidence 44555678899999999999999999986432222222223335899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+|+++|..++..+|+++||||+++|...|+++|+.++..+|+|++|+++||||++++++.++.+++++.++++.+++..
T Consensus 135 ~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~ 214 (447)
T PLN03127 135 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPG 214 (447)
T ss_pred cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999778899999998755566777778888888888877
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCE
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEE 884 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~ 884 (1021)
++++++|+||.++.++.+.. .++.++++|+++|.+.+|.|.+..++||||+|+++|+++|.|+|++|+|++|.|++||+
T Consensus 215 ~~vpiip~Sa~sa~~g~n~~-~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~ 293 (447)
T PLN03127 215 DEIPIIRGSALSALQGTNDE-IGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEE 293 (447)
T ss_pred CcceEEEeccceeecCCCcc-cccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCE
Confidence 78999999998776554332 23557899999999988888888899999999999999999999999999999999999
Q ss_pred EEEeecCC--eeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCC
Q psy5021 885 IEIVGYKQ--TIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRH 962 (1021)
Q Consensus 885 v~i~p~~~--~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~ 962 (1021)
|.+.|.+. ..+++|+||+++++++++|.|||+|+++|++++..++++|+|||+++++..+++|+|++.+|+++.++..
T Consensus 294 v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~~~~~~~~F~A~i~vl~~~~gg~~ 373 (447)
T PLN03127 294 VEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQRGQVICKPGSIKTYKKFEAEIYVLTKDEGGRH 373 (447)
T ss_pred EEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecCCCCceeEEEEEEEEEEcccccccC
Confidence 99987533 5679999999999999999999999999999999999999999998778889999999999998644445
Q ss_pred ccccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 963 TPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 963 ~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+||..||++++|+++.+++|++.+.++++++.+||.+.|+|++++|+|++.++||+||+
T Consensus 374 ~~i~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~gd~a~v~l~~~~p~~le~g~RfilR~ 432 (447)
T PLN03127 374 TPFFSNYRPQFYLRTADVTGKVELPEGVKMVMPGDNVTAVFELISPVPLEPGQRFALRE 432 (447)
T ss_pred cccccCceeEEEeeecceeEEEEeccCccccCCCCEEEEEEEECceEEEeeCCEEEEEe
Confidence 79999999999999999998888888899999999999999999999999999999996
No 30
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.6e-59 Score=536.55 Aligned_cols=375 Identities=73% Similarity=1.129 Sum_probs=334.9
Q ss_pred CCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh
Q psy5021 645 YSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH 724 (1021)
Q Consensus 645 ~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~ 724 (1021)
|...-..++.+++||+|||||||+++|++.....+......++.+|++++|+++|+|++.....+++++..++|+|||||
T Consensus 6 ~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh 85 (396)
T PRK12735 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH 85 (396)
T ss_pred cCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH
Confidence 34455678999999999999999999997544444444444557899999999999999999999888899999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
++|++++..++..+|++++|+|+.+|+..|+++|+.++..+++|++||++||||+.++++.++.+.+++..+++.+++..
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~ 165 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999777789999998655667777788999999988876
Q ss_pred CceEEEEecccccccCCCCCccCcc-hHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTT-SIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGE 883 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~-~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd 883 (1021)
++++++++||++|.|... ...|+ ++++|+++|.+.+|.|.+..++||||+|+++|+++|.|+|++|+|++|.|++||
T Consensus 166 ~~~~ii~~Sa~~g~n~~~--~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd 243 (396)
T PRK12735 166 DDTPIIRGSALKALEGDD--DEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGD 243 (396)
T ss_pred CceeEEecchhccccCCC--CCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCC
Confidence 678999999999866432 23454 689999999998887888889999999999999999999999999999999999
Q ss_pred EEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCc
Q psy5021 884 EIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHT 963 (1021)
Q Consensus 884 ~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~ 963 (1021)
++.+.|.+.+.+++|+||+++++++++|.|||+|+++|++++.+++++|+|||+++++.++++|+|++.+|+++.++.++
T Consensus 244 ~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~~~~~~~~f~a~i~vl~~~~~~~~~ 323 (396)
T PRK12735 244 EVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGSIKPHTKFEAEVYVLSKEEGGRHT 323 (396)
T ss_pred EEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCCCCCcceEEEEEEEEEecccCCCCC
Confidence 99999976566799999999999999999999999999999999999999999987777889999999999986433347
Q ss_pred cccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 964 PFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 964 ~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+|+.||++++|+++.+++|++.+.++++++.+|+.+.|+|++++|+|++.++||+||+
T Consensus 324 ~i~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~ 381 (396)
T PRK12735 324 PFFNGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNVKMTVELIAPIAMEEGLRFAIRE 381 (396)
T ss_pred cccCCCeeEEEeccceEEEEEEccCCCceeCCCCEEEEEEEECceEEEeECCEEEEEc
Confidence 8999999999999999998888788889999999999999999999999999999996
No 31
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=2.9e-59 Score=534.01 Aligned_cols=371 Identities=69% Similarity=1.089 Sum_probs=332.8
Q ss_pred cccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh
Q psy5021 647 TDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD 726 (1021)
Q Consensus 647 ~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~ 726 (1021)
..-..++.+++||+|||||||+++|++.....+.+....++.+|++++|+++|+|++.....++.+++.++|||||||++
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence 34456889999999999999999999755444444444445689999999999999999999988889999999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
|++++..++..+|++++|||+++|...|+++|+.++..+|+|++||++||||+++++++++.+.+++.++++.+++..++
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 167 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDD 167 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 99999999999999999999999999999999999999999988899999999865666777778999999999987677
Q ss_pred eEEEEecccccccCCCCCccCcc-hHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEE
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTT-SIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~-~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v 885 (1021)
++++++||++|.++.. .|+ ++++|+++|.+.+|.|.+..++||+|+|+++|+++|.|+|++|+|++|+|++||+|
T Consensus 168 ~~ii~vSa~~g~~~~~----~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v 243 (394)
T PRK12736 168 IPVIRGSALKALEGDP----KWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEV 243 (394)
T ss_pred ccEEEeeccccccCCC----cchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEE
Confidence 8999999998754432 333 68999999999888888888999999999999999999999999999999999999
Q ss_pred EEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccc
Q psy5021 886 EIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPF 965 (1021)
Q Consensus 886 ~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i 965 (1021)
.+.|.+.+.+++|+||++++.++++|.|||+|+++|++++.+++++|+|||+++++.++++|+|++.+++++.++.+++|
T Consensus 244 ~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~vl~~~~~~~~~~i 323 (394)
T PRK12736 244 EIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPGSIKPHTKFKAEVYILTKEEGGRHTPF 323 (394)
T ss_pred EEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEecCCCCCcceEEEEEEEEEecccCCCCCcc
Confidence 99987556679999999999999999999999999999999999999999998777778999999999998644445799
Q ss_pred cCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 966 FNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 966 ~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+.||++++|+++.+++|++...++++++++|+.+.|+|++++|+|+++++||+||+
T Consensus 324 ~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~ 379 (394)
T PRK12736 324 FNNYRPQFYFRTTDVTGSIELPEGTEMVMPGDNVTITVELIHPIAMEQGLKFAIRE 379 (394)
T ss_pred cCCceEEEEEccCeEEEEEEecCCcceeCCCCEEEEEEEECceEEEeeCCEEEEec
Confidence 99999999999999998888888889999999999999999999999999999996
No 32
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.8e-59 Score=532.67 Aligned_cols=375 Identities=71% Similarity=1.118 Sum_probs=334.0
Q ss_pred CCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh
Q psy5021 645 YSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH 724 (1021)
Q Consensus 645 ~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~ 724 (1021)
|...-..++.+++||+|||||||+++|++.....+.+....++.+|++++|+++|+|++.....++++++.++|+|||||
T Consensus 6 ~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~ 85 (396)
T PRK00049 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGH 85 (396)
T ss_pred ccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCH
Confidence 44555678999999999999999999997544444444444457899999999999999999999888899999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+|++++..++..+|++++|||+.+|...|+++|+.++..+++|.+||++||+|+++.++.++.+..++..+++.+++..
T Consensus 86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (396)
T PRK00049 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999666789999998655567777788999999999876
Q ss_pred CceEEEEecccccccCCCCCccCcc-hHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTT-SIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGE 883 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~-~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd 883 (1021)
++++++|+||++|.+.. ....|+ ++++|+++|.+.++.|.+..++||+|+|+++|+++|.|+|++|+|.+|.+++||
T Consensus 166 ~~~~iv~iSa~~g~~~~--~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd 243 (396)
T PRK00049 166 DDTPIIRGSALKALEGD--DDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGE 243 (396)
T ss_pred cCCcEEEeecccccCCC--CcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCC
Confidence 77899999999875421 123444 679999999988887888889999999999999999999999999999999999
Q ss_pred EEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCc
Q psy5021 884 EIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHT 963 (1021)
Q Consensus 884 ~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~ 963 (1021)
++.+.|.+.+..++|+||++++.++++|.+||+|+++|++++.+++++|+|||+++++.++++|+|++.+|+++.++..+
T Consensus 244 ~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~vl~~~~~g~~~ 323 (396)
T PRK00049 244 EVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPGSITPHTKFEAEVYVLSKEEGGRHT 323 (396)
T ss_pred EEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCCCCCcceEEEEEEEEEecCcCCCCC
Confidence 99999875466799999999999999999999999999999999999999999987777789999999999985433457
Q ss_pred cccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 964 PFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 964 ~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+|+.||++++|+++++++|++++.++++++++|+.+.|+|++.+|+|+++++||+|||
T Consensus 324 ~i~~g~~~~~~~~t~~~~~~i~l~~~~~~l~~g~~a~v~i~~~~p~~~e~~~RfilR~ 381 (396)
T PRK00049 324 PFFNGYRPQFYFRTTDVTGVIELPEGVEMVMPGDNVEMTVELIAPIAMEEGLRFAIRE 381 (396)
T ss_pred cccCCCEEEEEEecCcEEEEEEecCCCcccCCCCEEEEEEEECceEEEeeCCEEEEec
Confidence 9999999999999999999888878899999999999999999999999999999996
No 33
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=8.3e-59 Score=531.47 Aligned_cols=371 Identities=73% Similarity=1.124 Sum_probs=331.6
Q ss_pred cccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh
Q psy5021 647 TDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD 726 (1021)
Q Consensus 647 ~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~ 726 (1021)
..-+.++.+++||+|||||||+++|++.....+......++.+|+.++|+++|+|++.....++.+++.++|||||||++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 34456889999999999999999998654444444444456789999999999999999999988889999999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
|.+++..++..+|++++|+|+++|+..|+++|+.++..+++|++|+++||||+.+++++++.+++++.++++.+++...+
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~ 167 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDD 167 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccC
Confidence 99999999999999999999999999999999999999999977789999999875566777778899999999887667
Q ss_pred eEEEEecccccccCCCCCccCcc-hHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEE
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTT-SIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~-~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v 885 (1021)
++++++||++|.++.+ .|+ ++.+|+++|.+.+|.|.+..++||+|+|+++|+++|.|+|++|+|.+|.|++||+|
T Consensus 168 ~~ii~vSa~~g~~g~~----~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v 243 (394)
T TIGR00485 168 TPIIRGSALKALEGDA----EWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEV 243 (394)
T ss_pred ccEEECccccccccCC----chhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEE
Confidence 8999999998865432 343 57899999998777788888999999999999999999999999999999999999
Q ss_pred EEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccc
Q psy5021 886 EIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPF 965 (1021)
Q Consensus 886 ~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i 965 (1021)
.+.|.+++.+++|++|++++.+++.|.|||+|+++|++++..++++|+|||+++++.++++|+|++.+|+++.|+.+++|
T Consensus 244 ~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~~~~~~~~f~a~i~vl~~~~g~~~~~i 323 (394)
T TIGR00485 244 EIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPGSIKPHTKFEAEVYVLKKEEGGRHTPF 323 (394)
T ss_pred EEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEecCCCCCcceEEEEEEEEEecCCCCCCCcc
Confidence 99986545678999999999999999999999999999999999999999998777778999999999998644445799
Q ss_pred cCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 966 FNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 966 ~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+.||++++|+++.+++|++...+++++|.+|+.+.|+|++++|+|+++++||+||+
T Consensus 324 ~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~~~~~~p~~~~~~~rfilR~ 379 (394)
T TIGR00485 324 FSGYRPQFYFRTTDVTGSITLPEGVEMVMPGDNVKMTVELISPIALEQGMRFAIRE 379 (394)
T ss_pred ccCceEEEEEecceEEEEEEecCCcceeCCCCEEEEEEEECceEEEeECCEEEEec
Confidence 99999999999999998888778899999999999999999999999999999996
No 34
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=9.7e-59 Score=533.94 Aligned_cols=374 Identities=62% Similarity=0.996 Sum_probs=333.0
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY 727 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~ 727 (1021)
.-..++.+++||+|||||||+++|+.....+.......+..+|..++|+++|+|++.....++++++.++|||||||++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 34467899999999999999999997665555444444456899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
+++|..++..+|++++||||.+|...||++|+.++..+|+|++||++||||++++++.++.+++++..+++.++|...++
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~ 237 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDI 237 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcc
Confidence 99999999999999999999999999999999999999999899999999998766677888889999999999987789
Q ss_pred EEEEecccccccCCC------CCccCcc-hHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEee
Q psy5021 808 KIVIGSALLALEGKD------DNQLGTT-SIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVK 880 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~------~~~~~~~-~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~ 880 (1021)
+++|+||.+|.|... .....|+ ++++|+++|.+..+.|.+..++||||+|+++|+++|.|+|++|+|++|.|+
T Consensus 238 ~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~ 317 (478)
T PLN03126 238 PIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVK 317 (478)
T ss_pred eEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEEcCeEe
Confidence 999999998854321 0112454 478899999987666778889999999999999999999999999999999
Q ss_pred CCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCC
Q psy5021 881 NGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGG 960 (1021)
Q Consensus 881 ~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~ 960 (1021)
+||+|.+.|.+++..++|++|+.++.+++.|.|||+|+++|++++..++++|+|||+++++.++++|+|++.+++++.++
T Consensus 318 ~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~~~~~~~~F~A~i~vL~~~~gg 397 (478)
T PLN03126 318 VGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGSITPHTKFEAIVYVLKKEEGG 397 (478)
T ss_pred cCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCccEEecCCCCCceEEEEEEEEEecccccC
Confidence 99999999987777899999999999999999999999999999999999999999987777899999999999986444
Q ss_pred CCccccCCCEEEEEEeeceeeeeeccC-----CCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 961 RHTPFFNGYKPQFYFRTTDVTGICKLP-----ENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 961 ~~~~i~~G~~~~~~~~~~~~~~~~~~~-----~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
.++||+.||++++|+++.+++|++... +.++++++||.+.|+|++.+|+|+++++||+||+
T Consensus 398 ~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~~~~~~l~~gd~a~v~l~~~~Pi~~~~~~RfilR~ 463 (478)
T PLN03126 398 RHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIRE 463 (478)
T ss_pred CcccccCCcEEEEEEEecEEEEEEEEEecccCCCccEeCCCCEEEEEEEECCeEEEccCCEEEEec
Confidence 457999999999999999999877543 2568899999999999999999999999999996
No 35
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=2.9e-58 Score=529.15 Aligned_cols=364 Identities=30% Similarity=0.445 Sum_probs=323.3
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccc---------------cccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYG---------------GEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~---------------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
..++.+++||++||||||+++|+.....+.. ..+...+++|..++|+++|+|++.....++++++
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 4578999999999999999999865432221 2223346789999999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeeccccc---hhh
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM-------PQTREHILLARQVGVPNIVVFLNKADCVQ---DKE 784 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~Dl~~---~~~ 784 (1021)
.++|+|||||++|.++|+.+++.+|++|+||||++|.+ .||++|+.++..+|+|++||++||||+.+ .+.
T Consensus 86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~ 165 (447)
T PLN00043 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKA 165 (447)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHH
Confidence 99999999999999999999999999999999999854 69999999999999998999999999872 356
Q ss_pred HHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCC-CccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEee
Q psy5021 785 LLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDD-NQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSI 863 (1021)
Q Consensus 785 ~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~-~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v 863 (1021)
+++++.++++.+++..||+.++++|+|+||++|.|.... ....|+..++|+++|.+ ++.|.+..+.||||+|+++|++
T Consensus 166 ~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~-i~~p~~~~~~plr~~I~~v~~~ 244 (447)
T PLN00043 166 RYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPSDKPLRLPLQDVYKI 244 (447)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhh-cCCCccccCCCcEEEEEEEEEe
Confidence 789999999999999999877899999999998765433 24688889999999987 6667788899999999999999
Q ss_pred CCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCC--Cc
Q psy5021 864 SGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG--SI 941 (1021)
Q Consensus 864 ~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~--~~ 941 (1021)
+|.|+|++|+|++|.|++||+|.+.|.+. .++|+||++++.++++|.|||+|+++|++++..++++|+|||++. ++
T Consensus 245 ~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~--~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~~~~p~ 322 (447)
T PLN00043 245 GGIGTVPVGRVETGVIKPGMVVTFGPTGL--TTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPA 322 (447)
T ss_pred CCcEEEEEEEEECCEEeeCCEEEEcCCCC--EEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccCCCCCC
Confidence 99999999999999999999999999764 589999999999999999999999999999999999999999863 45
Q ss_pred cceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeec-c------------CCCcccccCCCeEEEEEEEcee
Q psy5021 942 KSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICK-L------------PENVEMVLPGDNIKLNVTLLSS 1008 (1021)
Q Consensus 942 ~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~-~------------~~~~~~l~~g~~~~v~~~~~~p 1008 (1021)
..+++|+|+|.|++++ .+|..||++++|+++.+++|+++ + .++|++|++||.|.|+|++.+|
T Consensus 323 ~~~~~F~A~i~~l~~~-----~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~i~~~~p 397 (447)
T PLN00043 323 KEAANFTSQVIIMNHP-----GQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKP 397 (447)
T ss_pred ccccEEEEEEEEECCC-----CCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEEEEECCc
Confidence 7899999999999987 58999999999999999998652 1 2357899999999999999999
Q ss_pred eecccC------CeEEEeC
Q psy5021 1009 IAIEIG------LRFAIRE 1021 (1021)
Q Consensus 1009 i~~~~~------~rf~lr~ 1021 (1021)
+|++++ +||+|||
T Consensus 398 i~~e~~~~~~~lGrf~lrd 416 (447)
T PLN00043 398 MVVETFSEYPPLGRFAVRD 416 (447)
T ss_pred EEEEecccCCCCceEEEEE
Confidence 999984 8999996
No 36
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=1.4e-57 Score=522.64 Aligned_cols=375 Identities=67% Similarity=1.046 Sum_probs=331.9
Q ss_pred cccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh
Q psy5021 647 TDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD 726 (1021)
Q Consensus 647 ~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~ 726 (1021)
.+-..++.+++||+|||||||+|+|++....+.......+..+|+.++|+++|+|++.....|+++++.++|+|||||.+
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 34456889999999999999999999865554444444445689999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
|++++..++..+|++++||||.+|...|+++|+.++..+|+|++|+++||||++++++.++.+++++..+++.++++.+.
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 167 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDD 167 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999988899999999876667788888999999999987777
Q ss_pred eEEEEecccccccCCCCC------ccCcc-hHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEe
Q psy5021 807 TKIVIGSALLALEGKDDN------QLGTT-SIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIV 879 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~------~~~~~-~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l 879 (1021)
++++|+||.+|.|..... ...|+ ++++|+++|.+.+|.|.+..+.||+|+|+++|+++|.|+|++|+|.+|.+
T Consensus 168 ~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l 247 (409)
T CHL00071 168 IPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGTV 247 (409)
T ss_pred ceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCEE
Confidence 999999999986543211 12455 47999999998887787888999999999999999999999999999999
Q ss_pred eCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCC
Q psy5021 880 KNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEG 959 (1021)
Q Consensus 880 ~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~ 959 (1021)
++||+|.+.|.++...++|+||+++++++++|.|||+|+++|++++.+++++||||++++++.++++|+|++.+++++.+
T Consensus 248 ~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~ 327 (409)
T CHL00071 248 KVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPGTITPHTKFEAQVYILTKEEG 327 (409)
T ss_pred eeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEecCCCCCcceEEEEEEEEEecccC
Confidence 99999999876555668999999999999999999999999999999999999999998777789999999999998533
Q ss_pred CCCccccCCCEEEEEEeeceeeeeeccCC-----CcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 960 GRHTPFFNGYKPQFYFRTTDVTGICKLPE-----NVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 960 ~~~~~i~~G~~~~~~~~~~~~~~~~~~~~-----~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+..+||..||++++|+++.+++|+++... .++++++|+.+.|+|++++|+|+++++||+||+
T Consensus 328 ~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~~~~~~~~l~~g~~a~v~l~~~~pi~~e~~~rfilR~ 394 (409)
T CHL00071 328 GRHTPFFPGYRPQFYVRTTDVTGKIESFTADDGSKTEMVMPGDRIKMTVELIYPIAIEKGMRFAIRE 394 (409)
T ss_pred CccccccCCceEEEEEcccEEEEEEEEEcccCCCCCcEecCCCEEEEEEEECCeEEEeeCCEEEEec
Confidence 23468999999999999999998776432 478999999999999999999999999999996
No 37
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=9.5e-58 Score=525.56 Aligned_cols=366 Identities=31% Similarity=0.484 Sum_probs=324.7
Q ss_pred ccccceeeeeeeeeccchhhhhhhcccccccc---------------ccccccccccCCchhhhhcCceEeeeEEEEeeC
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIY---------------GGEVRAFDTIDNAPEEKERGITISTSHVEYESE 712 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~---------------~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~ 712 (1021)
+-..++.+.+||+++|||||+++|+.....+. .+.++..+.+|..++|+++|+|++.....++++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 34567899999999999999999986443322 233444467899999999999999999999999
Q ss_pred CeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeecc--ccc-h
Q psy5021 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM-------PQTREHILLARQVGVPNIVVFLNKAD--CVQ-D 782 (1021)
Q Consensus 713 ~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~D--l~~-~ 782 (1021)
++.++|+|||||++|.++|+.++..+|+++|||||++|.+ .||++||.++..+|+|++||++|||| .++ +
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~ 163 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYS 163 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhh
Confidence 9999999999999999999999999999999999999984 79999999999999999999999999 443 4
Q ss_pred hhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCC-CccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEE
Q psy5021 783 KELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDD-NQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVF 861 (1021)
Q Consensus 783 ~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~-~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~ 861 (1021)
+++++++.+++..+++.+++..++++++|+||++|.|.... ....||..++|+++|.+ ++.|.+..++|+||+|+++|
T Consensus 164 ~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~-~~~~~~~~~~p~r~~I~~v~ 242 (446)
T PTZ00141 164 QERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDT-LEPPKRPVDKPLRLPLQDVY 242 (446)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhC-CCCCCcCCCCCeEEEEEEEE
Confidence 57899999999999999999877899999999998665432 24678889999999987 45577778899999999999
Q ss_pred eeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCC--
Q psy5021 862 SISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG-- 939 (1021)
Q Consensus 862 ~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~-- 939 (1021)
+++|.|+|++|+|++|.|++||+|.+.|.+. .++|+||++++.++++|.|||+|+++|++++..++++|+|||++.
T Consensus 243 ~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~--~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~~~~ 320 (446)
T PTZ00141 243 KIGGIGTVPVGRVETGILKPGMVVTFAPSGV--TTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDSKND 320 (446)
T ss_pred ecCCceEEEEEEEEcceEecCCEEEEccCCc--EEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecCCCC
Confidence 9999999999999999999999999999754 589999999999999999999999999999999999999999874
Q ss_pred CccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccC-------------CCcccccCCCeEEEEEEEc
Q psy5021 940 SIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLP-------------ENVEMVLPGDNIKLNVTLL 1006 (1021)
Q Consensus 940 ~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~g~~~~v~~~~~ 1006 (1021)
++..+++|+|+|.||+++ ++|+.||++++|+++.+++|+++-. .++++|.+|+.+.|+|+++
T Consensus 321 p~~~~~~f~a~i~~l~~~-----~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~ 395 (446)
T PTZ00141 321 PAKECADFTAQVIVLNHP-----GQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKMVPT 395 (446)
T ss_pred CCccceEEEEEEEEECCC-----CccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEEC
Confidence 456799999999999986 5899999999999999999876422 3578999999999999999
Q ss_pred eeeecccC------CeEEEeC
Q psy5021 1007 SSIAIEIG------LRFAIRE 1021 (1021)
Q Consensus 1007 ~pi~~~~~------~rf~lr~ 1021 (1021)
+|+|+++| +||+||+
T Consensus 396 ~pi~~e~~~~~~~lgrfilrd 416 (446)
T PTZ00141 396 KPMCVEVFNEYPPLGRFAVRD 416 (446)
T ss_pred CceEEeecccCCCCccEEEEE
Confidence 99999964 8999996
No 38
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=1.3e-55 Score=511.87 Aligned_cols=365 Identities=34% Similarity=0.545 Sum_probs=324.0
Q ss_pred cccceeeeeeeeeccchhhhhhhcccccccccc---------------ccccccccCCchhhhhcCceEeeeEEEEeeCC
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGG---------------EVRAFDTIDNAPEEKERGITISTSHVEYESEN 713 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~---------------~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~ 713 (1021)
-..++.+++||+|||||||+++|+.....+... .+...+++|+.++|+++|+|++.....+++++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 346789999999999999999999765554322 23345678999999999999999999999999
Q ss_pred eEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCC--CCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHHHHHH
Q psy5021 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVD--GPMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVE 790 (1021)
Q Consensus 714 ~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~--g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~~~~~ 790 (1021)
..++|||||||++|.+++..+++.+|++|+|+|+++ +...|+++|+.++..++++++||++||+|+.+ ++++++.+.
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 999999999999999999999999999999999999 88999999999999999877999999999986 345677778
Q ss_pred HHHHHhhhccccCCCceEEEEecccccccCCCCC-ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeE
Q psy5021 791 MEIRELLTEYDFDGENTKIVIGSALLALEGKDDN-QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTV 869 (1021)
Q Consensus 791 ~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~-~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~V 869 (1021)
+++.++++.+++....++++++||++|.+..... ..+||..++|+++|.. ++.|.+..++||+|+|+++|+++|.|+|
T Consensus 164 ~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~-~~~~~~~~~~p~r~~i~~~~~~~g~G~v 242 (425)
T PRK12317 164 EEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDN-LKPPEKPTDKPLRIPIQDVYSISGVGTV 242 (425)
T ss_pred HHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhc-CCCCccccCCCcEEEEEEEEeeCCCeEE
Confidence 8899998888886666899999999986554332 4679989999999986 6777778899999999999999999999
Q ss_pred EEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCC-CccceeeEE
Q psy5021 870 VTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG-SIKSYNIFE 948 (1021)
Q Consensus 870 v~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~-~~~~~~~f~ 948 (1021)
++|+|++|+|++||+|.+.|.+. .++|+||+.++.++++|.|||+|+++|++++..++++|+||++++ ++..+++|+
T Consensus 243 v~G~v~~G~v~~Gd~v~i~P~~~--~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~~~~~~~~~f~ 320 (425)
T PRK12317 243 PVGRVETGVLKVGDKVVFMPAGV--VGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPDNPPTVAEEFT 320 (425)
T ss_pred EEEEEeeccEecCCEEEECCCCC--eEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCCCCCCCcccEEE
Confidence 99999999999999999999765 489999999999999999999999999999999999999999876 467899999
Q ss_pred EEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeecc-------------CCCcccccCCCeEEEEEEEceeeecccC-
Q psy5021 949 CEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKL-------------PENVEMVLPGDNIKLNVTLLSSIAIEIG- 1014 (1021)
Q Consensus 949 a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~g~~~~v~~~~~~pi~~~~~- 1014 (1021)
|++.|++++ ++|+.||++++|+++.+++|+++- .+++++|++|+.|.|+|++++|+|+++|
T Consensus 321 a~v~~l~~~-----~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p~~~~~~~ 395 (425)
T PRK12317 321 AQIVVLQHP-----SAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLVIEKVK 395 (425)
T ss_pred EEEEEECCC-----CcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCeeEEEeCC
Confidence 999999986 589999999999999999987742 2357899999999999999999999998
Q ss_pred -----CeEEEeC
Q psy5021 1015 -----LRFAIRE 1021 (1021)
Q Consensus 1015 -----~rf~lr~ 1021 (1021)
+||+||+
T Consensus 396 ~~~~lgrfilr~ 407 (425)
T PRK12317 396 EIPQLGRFAIRD 407 (425)
T ss_pred cCCCCccEEEEE
Confidence 8999996
No 39
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=7.7e-55 Score=504.99 Aligned_cols=366 Identities=33% Similarity=0.524 Sum_probs=321.7
Q ss_pred ccccceeeeeeeeeccchhhhhhhcccccccc---------------ccccccccccCCchhhhhcCceEeeeEEEEeeC
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIY---------------GGEVRAFDTIDNAPEEKERGITISTSHVEYESE 712 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~---------------~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~ 712 (1021)
+-..++.+++||+|||||||+++|+.....+. .+.+...+.+|+.++|+++|+|++.....++++
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 34567899999999999999999986443322 122334467899999999999999999999999
Q ss_pred CeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCC---CcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHHHH
Q psy5021 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG---PMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDL 788 (1021)
Q Consensus 713 ~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g---~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~~~ 788 (1021)
+..++|||||||++|.+++..+++.+|++++|||++++ ...|+.+|+.++..++++++||++||+|+.+ ++++++.
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~ 163 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA 163 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence 99999999999999999999999999999999999998 6678999999988889887999999999985 3556777
Q ss_pred HHHHHHHhhhccccCCCceEEEEecccccccCCCC-CccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCce
Q psy5021 789 VEMEIRELLTEYDFDGENTKIVIGSALLALEGKDD-NQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRG 867 (1021)
Q Consensus 789 ~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~-~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G 867 (1021)
+.+++.++++.+++....++++++||++|.+.... ....|+..++|+++|.+ ++.|.+..++||+|+|+++|+++|.|
T Consensus 164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~-~~~~~~~~~~p~r~~i~~v~~~~g~G 242 (426)
T TIGR00483 164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA-LEPPEKPTDKPLRIPIQDVYSITGVG 242 (426)
T ss_pred HHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc-CCCCCCccCCCcEEEEEEEEecCCCe
Confidence 88899999998888766789999999998655433 23578888999999976 56677778899999999999999999
Q ss_pred eEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCC-Cccceee
Q psy5021 868 TVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG-SIKSYNI 946 (1021)
Q Consensus 868 ~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~-~~~~~~~ 946 (1021)
+|++|+|++|.|++||+|.+.|.+. .++|+||++++.++++|.|||+|+++|++++..++++|+||++++ +++.+++
T Consensus 243 ~vv~G~v~~G~i~~gd~v~i~P~~~--~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~~~~~~~~ 320 (426)
T TIGR00483 243 TVPVGRVETGVLKPGDKVVFEPAGV--SGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDNPPKVAKE 320 (426)
T ss_pred EEEEEEEccceeecCCEEEECCCCc--EEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCCCCceeeE
Confidence 9999999999999999999999764 589999999999999999999999999999999999999999876 4678999
Q ss_pred EEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeecc-------------CCCcccccCCCeEEEEEEEceeeeccc
Q psy5021 947 FECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKL-------------PENVEMVLPGDNIKLNVTLLSSIAIEI 1013 (1021)
Q Consensus 947 f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~g~~~~v~~~~~~pi~~~~ 1013 (1021)
|+|++.|++++ +||+.||++++|+++.+++|+++- .+++++|++|+.|.|+|++++|+|++.
T Consensus 321 f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~ 395 (426)
T TIGR00483 321 FTAQIVVLQHP-----GAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPMVIEA 395 (426)
T ss_pred EEEEEEEECCC-----CccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCeeEEee
Confidence 99999999987 599999999999999999987632 235789999999999999999999998
Q ss_pred ------CCeEEEeC
Q psy5021 1014 ------GLRFAIRE 1021 (1021)
Q Consensus 1014 ------~~rf~lr~ 1021 (1021)
.+||+||+
T Consensus 396 ~~~~~~~grf~lr~ 409 (426)
T TIGR00483 396 VKEIPPLGRFAIRD 409 (426)
T ss_pred cccCCCCccEEEEE
Confidence 58999996
No 40
>KOG0458|consensus
Probab=100.00 E-value=2.1e-53 Score=469.48 Aligned_cols=364 Identities=26% Similarity=0.392 Sum_probs=326.8
Q ss_pred ccceeeeeeeeeccchhhhhhhcccccc---------------ccccccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSE---------------IYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~---------------~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
..++..+.||+++|||||+++|+..... .+.+.+.+.|.+|.+++||+||+|.+.+...|+...+
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 3467789999999999999999754332 2345566778899999999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM-------PQTREHILLARQVGVPNIVVFLNKADCVQ-DKELL 786 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~ 786 (1021)
.++|+|+|||.+|+++|+.++.+||+++|||||+.|.+ +||+||+.+++.+|+.++||++||||+++ +++|+
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF 335 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDRF 335 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHHH
Confidence 99999999999999999999999999999999998865 89999999999999999999999999998 57899
Q ss_pred HHHHHHHHHhh-hccccCCCceEEEEecccccccCCCC----CccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEE
Q psy5021 787 DLVEMEIRELL-TEYDFDGENTKIVIGSALLALEGKDD----NQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVF 861 (1021)
Q Consensus 787 ~~~~~~~~~~l-~~~~~~~~~~~ii~iSa~~~~~~~~~----~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~ 861 (1021)
+++++.+..|| +..||...++.|+|||+++|.|.... ....||..++||+.|++ +..|.++.++||++.|.+++
T Consensus 336 ~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~~~~kPl~ltIsdi~ 414 (603)
T KOG0458|consen 336 EEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPERPIDKPLRLTISDIY 414 (603)
T ss_pred HHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCCcccCCeEEEhhhee
Confidence 99999999999 88999988999999999999765433 24679999999999998 77788889999999999999
Q ss_pred eeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEee-CC-
Q psy5021 862 SISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAK-IG- 939 (1021)
Q Consensus 862 ~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~-~~- 939 (1021)
..++.|..++|+|++|.|++||+|+++|+... +.|++|.+++.+...|.|||+|.+.|.++.++.++.|+++|. +.
T Consensus 415 ~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~--~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~~~~~~ 492 (603)
T KOG0458|consen 415 PLPSSGVSISGKIESGYIQPGQKLYIMTSRED--ATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIADSGPQF 492 (603)
T ss_pred ecCCCeeEEEEEEeccccccCCEEEEecCcce--EEEEeeecCCCcceeEeeCCEEEEecCccChhhcccceeeecCCCc
Confidence 99999999999999999999999999987654 889999999999999999999999999999999999999994 44
Q ss_pred CccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeee-cc------------CCCcccccCCCeEEEEEEEc
Q psy5021 940 SIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGIC-KL------------PENVEMVLPGDNIKLNVTLL 1006 (1021)
Q Consensus 940 ~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~-~~------------~~~~~~l~~g~~~~v~~~~~ 1006 (1021)
+...+.+|.+++.+|+.. .||..|.+..+|+|+..++|.+ ++ ++.++++..|+.|+|+++.+
T Consensus 493 ~i~~~~~f~~~~~~f~~~-----~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~vele~~ 567 (603)
T KOG0458|consen 493 PISKTTRFVARITTFDIN-----LPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIVELETE 567 (603)
T ss_pred cccceeEEEEEEEEeecc-----ccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceeeeecccc
Confidence 356779999999999976 6999999999999998887643 22 34679999999999999999
Q ss_pred eeeecccC------CeEEEeC
Q psy5021 1007 SSIAIEIG------LRFAIRE 1021 (1021)
Q Consensus 1007 ~pi~~~~~------~rf~lr~ 1021 (1021)
+|||++.| +||+||.
T Consensus 568 ~pI~~etf~~~~~lgr~vlr~ 588 (603)
T KOG0458|consen 568 RPICLETFAENRALGRVVLRK 588 (603)
T ss_pred CchhhhhhhhchhheeEEEec
Confidence 99999977 8999993
No 41
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=2.2e-51 Score=427.68 Aligned_cols=350 Identities=29% Similarity=0.454 Sum_probs=304.2
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe-------------------
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE------------------- 710 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~------------------- 710 (1021)
..+++|.+||+|||||||+++|+....+.+++..+ .++|.++||.++|.|.+++...+-
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR--~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATR--SYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCCCCCcchh--hhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 35799999999999999999999866666555544 568999999999999988876542
Q ss_pred ----eCCeEEEEEecCChhhhHHHHHHHh--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhh
Q psy5021 711 ----SENKHYAHVDCPGHADYIKNMITGA--AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKE 784 (1021)
Q Consensus 711 ----~~~~~i~liDtpG~~~~~~~~~~~~--~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~ 784 (1021)
..++.+.|+||-||+.|++++++++ .+.|+.+|+|.|++|++..|+||+.++..+++| +|||+||+|+.+ ++
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lP-viVvvTK~D~~~-dd 271 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELP-VIVVVTKIDMVP-DD 271 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCC-EEEEEEecccCc-HH
Confidence 2347889999999999999999998 578999999999999999999999999999999 999999999997 67
Q ss_pred HHHHHHHHHHHhhhccccCC--------------------CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCC
Q psy5021 785 LLDLVEMEIRELLTEYDFDG--------------------ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPT 844 (1021)
Q Consensus 785 ~~~~~~~~~~~~l~~~~~~~--------------------~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~ 844 (1021)
+++.+.+++..+|+..+--+ .-+|++.+|+.+|. +++-|.+.+ ..+|.
T Consensus 272 r~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~-----------GldlL~e~f-~~Lp~ 339 (527)
T COG5258 272 RFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGE-----------GLDLLDEFF-LLLPK 339 (527)
T ss_pred HHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCc-----------cHHHHHHHH-HhCCc
Confidence 78888888888887643111 12689999999883 555444444 44765
Q ss_pred CCC-CCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeec--CCeeEEEEEEEEecccccceeccCceEEEEe
Q psy5021 845 PNR-ITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGY--KQTIKTTITGIEMFKKTLDEGLAGENVGILL 921 (1021)
Q Consensus 845 ~~~-~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~--~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l 921 (1021)
..+ ....||+|+|+++|++.|+|+|++|.|.+|.++.||+++++|+ +++..++||||++|+-.++.|.||..+++++
T Consensus 340 rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~iig~Al 419 (527)
T COG5258 340 RRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGSIIGIAL 419 (527)
T ss_pred ccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEeeEEeccccCCcEEEEEe
Confidence 434 3457999999999999999999999999999999999999986 4688999999999999999999999999999
Q ss_pred cccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEE
Q psy5021 922 RSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKL 1001 (1021)
Q Consensus 922 ~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v 1001 (1021)
+++.++.+++|||++...+|++.++|+|++.+|.|| +.|..||.|++|+.|++.++..+=.+ ...+.+||...|
T Consensus 420 ~gv~~e~lerGMVl~~~~~pkaVref~AeV~vl~HP-----T~I~aGye~v~H~etI~e~~~f~~id-~~~L~~GD~g~v 493 (527)
T COG5258 420 KGVEKEELERGMVLSAGADPKAVREFDAEVLVLRHP-----TTIRAGYEPVFHYETIREAVYFEEID-KGFLMPGDRGVV 493 (527)
T ss_pred cccCHHHHhcceEecCCCCchhhheecceEEEEeCC-----cEEecCceeeeEeeEeeheeEEEEcc-cccccCCCcceE
Confidence 999999999999999887799999999999999998 79999999999999999986554333 478999999999
Q ss_pred EEEEc-eeeecccCCeEEEeC
Q psy5021 1002 NVTLL-SSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 1002 ~~~~~-~pi~~~~~~rf~lr~ 1021 (1021)
.++|. ||-.++.||+|+|||
T Consensus 494 r~~fkyrP~~v~eGQ~fvFRe 514 (527)
T COG5258 494 RMRFKYRPHHVEEGQKFVFRE 514 (527)
T ss_pred EEEEEeCchhhccCcEEEEec
Confidence 99977 999999999999997
No 42
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=5.4e-51 Score=467.15 Aligned_cols=355 Identities=25% Similarity=0.362 Sum_probs=307.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccc-----------------cccccccccCCchhhhhcCceEeeeEEEEeeCCeE
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYG-----------------GEVRAFDTIDNAPEEKERGITISTSHVEYESENKH 715 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~-----------------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~ 715 (1021)
...++||+|||||||+++|+.....+.. +++...|++|+.++|++||+|++.....++++++.
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 3568899999999999999865544332 13445568999999999999999999999999999
Q ss_pred EEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHHHHHHHHHH
Q psy5021 716 YAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIR 794 (1021)
Q Consensus 716 i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~~~~~~~~~ 794 (1021)
++|||||||++|.++|..++..+|++|+||||.+|...||++|+.++..++++++||++||||+++ ++++++.+++++.
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~ 161 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYL 161 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988999999999985 3456777788888
Q ss_pred HhhhccccCCCceEEEEecccccccCCCC-CccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEE
Q psy5021 795 ELLTEYDFDGENTKIVIGSALLALEGKDD-NQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGK 873 (1021)
Q Consensus 795 ~~l~~~~~~~~~~~ii~iSa~~~~~~~~~-~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~ 873 (1021)
.+++.+++. +++++|+||++|.+.... ....||..++|+++|.. ++.|.+..++|+||+|+++|+....+.-++|+
T Consensus 162 ~~~~~~~~~--~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~-~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~ 238 (406)
T TIGR02034 162 AFAEQLGFR--DVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET-VEVERDAQDLPLRFPVQYVNRPNLDFRGYAGT 238 (406)
T ss_pred HHHHHcCCC--CccEEEeecccCCCCcccccCCCccchhHHHHHHHh-cCCCCCcCCCCcccceEEEeecCCCcEEEEEE
Confidence 888877764 578999999998655433 24678889999999987 56677778899999999998754433337899
Q ss_pred EEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCC-ccceeeEEEEEE
Q psy5021 874 IERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS-IKSYNIFECEVY 952 (1021)
Q Consensus 874 V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~~~f~a~i~ 952 (1021)
|++|.|++||+|.+.|.+ ..++|+||++++.++++|.|||+|+++|++ ..++++|+|||+++. +..+++|+|++.
T Consensus 239 v~~G~l~~gd~v~i~P~~--~~~~VksI~~~~~~~~~a~~G~~v~l~l~~--~~~i~rG~vl~~~~~~~~~~~~f~a~i~ 314 (406)
T TIGR02034 239 IASGSVHVGDEVVVLPSG--RSSRVARIVTFDGDLEQARAGQAVTLTLDD--EIDISRGDLLAAADSAPEVADQFAATLV 314 (406)
T ss_pred EecceeecCCEEEEeCCC--cEEEEEEEEECCcccCEeCCCCEEEEEECC--ccccCCccEEEcCCCCCCcceEEEEEEE
Confidence 999999999999999975 458999999999999999999999999985 678999999999875 678999999999
Q ss_pred EeeccCCCCCccccCCCEEEEEEeeceeeeeeccC-----------CCcccccCCCeEEEEEEEceeeecccC------C
Q psy5021 953 ILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLP-----------ENVEMVLPGDNIKLNVTLLSSIAIEIG------L 1015 (1021)
Q Consensus 953 ~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~g~~~~v~~~~~~pi~~~~~------~ 1015 (1021)
++++ .+|+.||++++|+|+.+++|++... .+++.+.+|+.+.|+|++++|+|++.+ +
T Consensus 315 ~l~~------~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~~~~~~l~~~~~~~v~l~~~~p~~~~~~~~~~~lG 388 (406)
T TIGR02034 315 WMAE------EPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEKGAAKSLELNEIGRVNLSLDEPIAFDPYAENRTTG 388 (406)
T ss_pred EeCh------hhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcccCCcccCCCCEEEEEEEECCeeccCcccCCCcce
Confidence 9985 3899999999999999999887532 235889999999999999999999988 4
Q ss_pred eEEEe
Q psy5021 1016 RFAIR 1020 (1021)
Q Consensus 1016 rf~lr 1020 (1021)
||+||
T Consensus 389 r~~l~ 393 (406)
T TIGR02034 389 AFILI 393 (406)
T ss_pred eEEEE
Confidence 99994
No 43
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=7.1e-51 Score=472.12 Aligned_cols=360 Identities=23% Similarity=0.335 Sum_probs=308.3
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccc-----------------cccccccccCCchhhhhcCceEeeeEEEEee
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYG-----------------GEVRAFDTIDNAPEEKERGITISTSHVEYES 711 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-----------------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~ 711 (1021)
...+...++||+|+|||||+++|+.....+.. +.+...+++|+.++|++||+|++.....+++
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 34578899999999999999999876544432 1233456899999999999999999999999
Q ss_pred CCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHHHHHH
Q psy5021 712 ENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVE 790 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~~~~~ 790 (1021)
++..++|||||||++|.+++..++..+|++++||||++|+..||++|+.++..++++++||++||||+++ ++++++.++
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~ 184 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIR 184 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888999999999985 345677777
Q ss_pred HHHHHhhhccccCCCceEEEEecccccccCCCCC-ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeE
Q psy5021 791 MEIRELLTEYDFDGENTKIVIGSALLALEGKDDN-QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTV 869 (1021)
Q Consensus 791 ~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~-~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~V 869 (1021)
+++..+++.+++. ...+++|+||++|.+..... ...|+.+++|+++|.. ++.|.+..+.|+||+|+++++.......
T Consensus 185 ~~l~~~~~~~~~~-~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~-i~~~~~~~~~p~r~~I~~v~~~~~~~~g 262 (474)
T PRK05124 185 EDYLTFAEQLPGN-LDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLET-VDIQRVVDAQPFRFPVQYVNRPNLDFRG 262 (474)
T ss_pred HHHHHHHHhcCCC-CCceEEEEEeecCCCcccccccccccchhhHHHHHhh-cCCCCCCCCCCceeeEEEEEecCCcccc
Confidence 8888887777642 35789999999987654332 4678888999998875 6667777889999999999875432222
Q ss_pred EEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCC-ccceeeEE
Q psy5021 870 VTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS-IKSYNIFE 948 (1021)
Q Consensus 870 v~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~~~f~ 948 (1021)
+.|+|.+|.|++||+|.+.|.+. .++|+||++++.+++.|.|||+|+++|++ ..++++|+|||+++. +..+++|+
T Consensus 263 ~~G~V~sG~l~~Gd~v~i~P~~~--~~~VksI~~~~~~v~~A~aG~~V~l~L~~--~~~i~rG~VL~~~~~~~~~~~~f~ 338 (474)
T PRK05124 263 YAGTLASGVVKVGDRVKVLPSGK--ESNVARIVTFDGDLEEAFAGEAITLVLED--EIDISRGDLLVAADEALQAVQHAS 338 (474)
T ss_pred eEEEEEeEEEecCCEEEEecCCc--eEEEEEEEEcCccccCcCCCCEEEEEeCC--ccccCCccEEECCCCCCccceEEE
Confidence 67999999999999999999764 58999999999999999999999999985 678999999998864 67899999
Q ss_pred EEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccC-----------CCcccccCCCeEEEEEEEceeeecccC---
Q psy5021 949 CEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLP-----------ENVEMVLPGDNIKLNVTLLSSIAIEIG--- 1014 (1021)
Q Consensus 949 a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~g~~~~v~~~~~~pi~~~~~--- 1014 (1021)
|++.|++ + .+|+.||++++|+++.+++|++... .++++|++|+.|.|+|++.+|+|++++
T Consensus 339 a~i~~l~-~-----~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~~~~~~l~~g~~a~v~l~~~~pv~~e~~~~~ 412 (474)
T PRK05124 339 ADVVWMA-E-----QPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQREAENLPLNGIGLVELTFDEPLVLDPYQQN 412 (474)
T ss_pred EEEEEeC-C-----cccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcccCccccCCCCEEEEEEEECCeeccccCCcC
Confidence 9999998 3 4899999999999999999877432 136799999999999999999999998
Q ss_pred ---CeEEEe
Q psy5021 1015 ---LRFAIR 1020 (1021)
Q Consensus 1015 ---~rf~lr 1020 (1021)
+||+||
T Consensus 413 ~~lGRfil~ 421 (474)
T PRK05124 413 RVTGGFIFI 421 (474)
T ss_pred CcceeEEEE
Confidence 579995
No 44
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=1.2e-50 Score=463.03 Aligned_cols=337 Identities=29% Similarity=0.412 Sum_probs=288.1
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe---------------eC--
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE---------------SE-- 712 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~---------------~~-- 712 (1021)
..+++|.+||+|||||||+++|++.. +|++++|.+||+|++.++..+. .+
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~-------------~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~ 99 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVK-------------TVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSS 99 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCC-------------cccchhhHHhCCchhccccccccccCcccCCcccccccCCC
Confidence 45789999999999999999999743 5899999999999999876541 11
Q ss_pred ----------------CeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCCeEEEEEe
Q psy5021 713 ----------------NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-PMPQTREHILLARQVGVPNIVVFLN 775 (1021)
Q Consensus 713 ----------------~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g-~~~qt~e~l~~~~~~~ip~iIvviN 775 (1021)
.+.++|+|||||++|+++|..++..+|+++|||||+++ +.+||++|+.++..+|++++|||+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlN 179 (460)
T PTZ00327 100 KPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQN 179 (460)
T ss_pred cccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEe
Confidence 24789999999999999999999999999999999986 7899999999999999998999999
Q ss_pred eccccchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeE
Q psy5021 776 KADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLM 855 (1021)
Q Consensus 776 K~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~ 855 (1021)
|+|+++ .+..++..+++.++++... ....+++|+||++|. |++.|+++|.+.+|.|.+..+.|++|
T Consensus 180 KiDlv~-~~~~~~~~~ei~~~l~~~~--~~~~~iipVSA~~G~-----------nI~~Ll~~L~~~lp~~~r~~~~p~r~ 245 (460)
T PTZ00327 180 KIDLVK-EAQAQDQYEEIRNFVKGTI--ADNAPIIPISAQLKY-----------NIDVVLEYICTQIPIPKRDLTSPPRM 245 (460)
T ss_pred cccccC-HHHHHHHHHHHHHHHHhhc--cCCCeEEEeeCCCCC-----------CHHHHHHHHHhhCCCCCCCCCCCcEE
Confidence 999986 3334555566777665432 245799999999883 89999999998788888888999999
Q ss_pred EEEEEEeeCC--------ceeEEEEEEEEEEeeCCCEEEEeecCC-----------eeEEEEEEEEecccccceeccCce
Q psy5021 856 PIEDVFSISG--------RGTVVTGKIERGIVKNGEEIEIVGYKQ-----------TIKTTITGIEMFKKTLDEGLAGEN 916 (1021)
Q Consensus 856 ~I~~~~~v~g--------~G~Vv~G~V~~G~l~~gd~v~i~p~~~-----------~~~~~Vksi~~~~~~~~~a~~G~~ 916 (1021)
+|+++|.+.| .|+|++|+|.+|++++||+|.+.|.+. ..+++|+||++++.++++|.|||+
T Consensus 246 ~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~ 325 (460)
T PTZ00327 246 IVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPGGL 325 (460)
T ss_pred EEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEECCeECCEEcCCCE
Confidence 9999999875 799999999999999999999999641 146899999999999999999999
Q ss_pred EEEEec---ccCccCcccceEEeeCCC-ccceeeEEEEEEEeeccC-----CCC----CccccCCCEEEEEEeeceeeee
Q psy5021 917 VGILLR---SVKREEVERGQVLAKIGS-IKSYNIFECEVYILSKEE-----GGR----HTPFFNGYKPQFYFRTTDVTGI 983 (1021)
Q Consensus 917 v~l~l~---~~~~~~i~~G~vl~~~~~-~~~~~~f~a~i~~~~~~~-----~~~----~~~i~~G~~~~~~~~~~~~~~~ 983 (1021)
|+++|+ +++..++.||+||++++. ++.++.|+|++.|+++.. ++. ..+|+.||++++|+++.+++|+
T Consensus 326 vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~~~~~~~~~~~~~l~~g~~~~l~~gt~~~~~~ 405 (460)
T PTZ00327 326 IGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVKSQDGKKATKVAKLKKGESLMINIGSTTTGGR 405 (460)
T ss_pred EEEEeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEecccccccccccccccCCcccCCCCEEEEEecccEEEEE
Confidence 999997 688889999999999875 556789999999998731 000 2689999999999999999987
Q ss_pred eccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 984 CKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 984 ~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+...+. +. .++|++++|+|+.+|+||+||+
T Consensus 406 i~~i~~-------~~-~~~l~l~~P~~~~~gdr~ilr~ 435 (460)
T PTZ00327 406 VVGIKD-------DG-IAKLELTTPVCTSVGEKIALSR 435 (460)
T ss_pred EEEeCC-------Ce-EEEEEECccEeccCCCEEEEEe
Confidence 764432 11 7889999999999999999994
No 45
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-50 Score=414.47 Aligned_cols=357 Identities=26% Similarity=0.383 Sum_probs=308.6
Q ss_pred ccccceeeeeeeeeccchhhhhhhcccccccc-----------------ccccccccccCCchhhhhcCceEeeeEEEEe
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIY-----------------GGEVRAFDTIDNAPEEKERGITISTSHVEYE 710 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~-----------------~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~ 710 (1021)
-||-+|+|- ++.|||||+++|+.....+. ++.+.....+|-...||+.|+|||..+.+|.
T Consensus 6 lLRfiTcGS---VDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 6 LLRFITCGS---VDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred ceeEEEecc---ccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 355566654 99999999999986543322 1222333356889999999999999999999
Q ss_pred eCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHHHHH
Q psy5021 711 SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLV 789 (1021)
Q Consensus 711 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~~~~ 789 (1021)
++++++.+.|||||+.|.+||..|++-||++|++|||..|+..||+.|..++..+|++|+||++|||||++ ++++|+++
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I 162 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAI 162 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 67899999
Q ss_pred HHHHHHhhhccccCCCceEEEEecccccccCCCCC-ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCcee
Q psy5021 790 EMEIRELLTEYDFDGENTKIVIGSALLALEGKDDN-QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGT 868 (1021)
Q Consensus 790 ~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~-~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~ 868 (1021)
..++..+.+.+++.. ..+||+||+.|.|..... .++||..++|++.|.. +........+||||||+.+.+-.--=+
T Consensus 163 ~~dy~~fa~~L~~~~--~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~-v~i~~~~~~~~~RfPVQ~V~Rp~~dfR 239 (431)
T COG2895 163 VADYLAFAAQLGLKD--VRFIPISALLGDNVVSKSENMPWYKGPTLLEILET-VEIADDRSAKAFRFPVQYVNRPNLDFR 239 (431)
T ss_pred HHHHHHHHHHcCCCc--ceEEechhccCCcccccccCCCcccCccHHHHHhh-ccccccccccceeeceEEecCCCCccc
Confidence 999999999999864 589999999987765443 5789999999999986 443444556789999999988553334
Q ss_pred EEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCC-ccceeeE
Q psy5021 869 VVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS-IKSYNIF 947 (1021)
Q Consensus 869 Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~~~f 947 (1021)
-..|+|++|++++||+|.+.|++.. ++|++|..++.++++|.+|+.|+|.|.. ..|++|||+|++.+. |.+++.|
T Consensus 240 GyaGtiasG~v~~Gd~vvvlPsG~~--s~V~~Ivt~dg~~~~A~aG~aVtl~L~d--eidisRGd~i~~~~~~~~~~~~f 315 (431)
T COG2895 240 GYAGTIASGSVKVGDEVVVLPSGKT--SRVKRIVTFDGELAQASAGEAVTLVLAD--EIDISRGDLIVAADAPPAVADAF 315 (431)
T ss_pred ccceeeeccceecCCeEEEccCCCe--eeEEEEeccCCchhhccCCceEEEEEcc--eeecccCcEEEccCCCcchhhhc
Confidence 4899999999999999999998764 8999999999999999999999999985 889999999998874 6789999
Q ss_pred EEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeecc-----------CCCcccccCCCeEEEEEEEceeeecccC--
Q psy5021 948 ECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKL-----------PENVEMVLPGDNIKLNVTLLSSIAIEIG-- 1014 (1021)
Q Consensus 948 ~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~g~~~~v~~~~~~pi~~~~~-- 1014 (1021)
.|.++|+... |+.+|-+..+.+.+..+.+++.- ....+.|..|+.+.|++.+..|+++++|
T Consensus 316 ~A~vvWm~~~------pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~~a~~l~lN~Ig~v~i~~~~pi~fd~Y~~ 389 (431)
T COG2895 316 DADVVWMDEE------PLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQEGAESLPLNEIGRVRISFDKPIAFDAYAE 389 (431)
T ss_pred ceeEEEecCC------CCCCCceEEEEecceEEEEEeeeeEEEEeccccccccccccCCCcceEEEEecCCceeeccccc
Confidence 9999999975 89999999999999888876632 2257889999999999999999999998
Q ss_pred ----CeEEEe
Q psy5021 1015 ----LRFAIR 1020 (1021)
Q Consensus 1015 ----~rf~lr 1020 (1021)
++|||=
T Consensus 390 N~atG~FIlI 399 (431)
T COG2895 390 NRATGSFILI 399 (431)
T ss_pred CcccccEEEE
Confidence 688873
No 46
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=1.4e-49 Score=428.64 Aligned_cols=266 Identities=52% Similarity=0.908 Sum_probs=257.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
||+|+||+|||||||+++|++.+|.+.+.|.++++++++|+.++|++||+|++++..++.|+ +++++|||||||.+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~----~~~i~liDTPG~~d 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK----DHRINIIDTPGHVD 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC----CEEEEEEECCCcHH
Confidence 89999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeeeeecc
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIG 169 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p~~ 169 (1021)
|..++.++++.+|++|+|||+.+|++.+++.+|+.+...++|+++|+||+|+.++++++.++++++.++..+.+.++|+.
T Consensus 77 f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pis 156 (270)
T cd01886 77 FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIG 156 (270)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEecccceeeeecC--C-CeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHHHHHHHH
Q psy5021 170 IEENYEGIVDIINKKSFFWKE--N-SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSIRKL 245 (1021)
Q Consensus 170 ~~~~~~g~id~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~~~~~~~ 245 (1021)
..+.|.|++|++++++|.|.. + .+...++|++..+.+.++|++|+|.+++.||+|||+||++ +++.+++..+++++
T Consensus 157 a~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~~ 236 (270)
T cd01886 157 EEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEIKAAIRKG 236 (270)
T ss_pred cCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 999999999999999999943 2 2677899999999999999999999999999999999999 99999999999999
Q ss_pred HhcCceeEEEeccccCcccHHHHHHHHHHhCCCC
Q psy5021 246 VLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSP 279 (1021)
Q Consensus 246 ~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p 279 (1021)
+..+.++|||||||.++.|++.||+.|++++|+|
T Consensus 237 ~~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 237 TIANKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred HHcCcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999998
No 47
>KOG0459|consensus
Probab=100.00 E-value=5.6e-50 Score=420.63 Aligned_cols=361 Identities=28% Similarity=0.420 Sum_probs=321.0
Q ss_pred cceeeeeeeeeccchhhhhhhcccccccc---------------ccccccccccCCchhhhhcCceEeeeEEEEeeCCeE
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIY---------------GGEVRAFDTIDNAPEEKERGITISTSHVEYESENKH 715 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~---------------~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~ 715 (1021)
....-+.||+++||||+-+.|+.....+. +..-...|++|...+||+.|.|+..+..+|++..+.
T Consensus 79 hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~~ 158 (501)
T KOG0459|consen 79 HVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENKR 158 (501)
T ss_pred CceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEeccee
Confidence 45667889999999999988875433332 112233468999999999999999999999999999
Q ss_pred EEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeeccccc---hhhH
Q psy5021 716 YAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM-------PQTREHILLARQVGVPNIVVFLNKADCVQ---DKEL 785 (1021)
Q Consensus 716 i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~Dl~~---~~~~ 785 (1021)
++++|+|||..|+++|+.++.+||.++||++|..|.+ +||+||..+++..|+.++||++||||-.. .++|
T Consensus 159 ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eR 238 (501)
T KOG0459|consen 159 FTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNER 238 (501)
T ss_pred EEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcchhh
Confidence 9999999999999999999999999999999988775 69999999999999999999999999653 4689
Q ss_pred HHHHHHHHHHhhhccccCCC-ceEEEEecccccccCCCCC--ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEe
Q psy5021 786 LDLVEMEIRELLTEYDFDGE-NTKIVIGSALLALEGKDDN--QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFS 862 (1021)
Q Consensus 786 ~~~~~~~~~~~l~~~~~~~~-~~~ii~iSa~~~~~~~~~~--~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~ 862 (1021)
+++++.++..+|+.+||++. ...++|+|+.+|.+.++.. ...|+.++.+|+.|++ ++...|..+.|++++|.+-|+
T Consensus 239 y~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~-l~~~~R~~~GP~~~pI~~Kyk 317 (501)
T KOG0459|consen 239 YEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDE-LPHLERILNGPIRCPVANKYK 317 (501)
T ss_pred HHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCCccceehhc-cCcccccCCCCEEeehhhhcc
Confidence 99999999999999999754 4679999999998776554 5889999999999998 888889999999999999987
Q ss_pred eCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCC-c
Q psy5021 863 ISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS-I 941 (1021)
Q Consensus 863 v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~ 941 (1021)
.+|||+.|+|++|++++||.+.++|.+.. +.|.+|...+..++.+.||+++.|.|+++..+||..|.|||++++ .
T Consensus 318 --dmGTvv~GKvEsGsi~kg~~lvvMPnk~~--veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~n~~ 393 (501)
T KOG0459|consen 318 --DMGTVVGGKVESGSIKKGQQLVVMPNKTN--VEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSPNNPC 393 (501)
T ss_pred --ccceEEEEEecccceecCCeEEEccCCcc--eEEEEEecccceeeeccCCcceEEEecccchhhccCceEEecCCCcc
Confidence 66799999999999999999999997654 789999999999999999999999999999999999999999886 5
Q ss_pred cceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeecc------------CCCcccccCCCeEEEEEEEceee
Q psy5021 942 KSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKL------------PENVEMVLPGDNIKLNVTLLSSI 1009 (1021)
Q Consensus 942 ~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~------------~~~~~~l~~g~~~~v~~~~~~pi 1009 (1021)
.+.+.|+|+|.+++|. .-|..||.++||+|++-..+.+++ +..+++++.|+.++++|+...||
T Consensus 394 ~s~~~F~aqi~IlE~~-----sIi~~GY~~VlHIht~ieEv~i~li~~idkktg~ksKkrprFvkq~~~~iarl~t~~~i 468 (501)
T KOG0459|consen 394 KSGRTFDAQIVILEHK-----SIICAGYSCVLHIHTAVEEVEIKLIHLIDKKTGEKSKKRPRFVKQGQKCIARLETEGPI 468 (501)
T ss_pred ccccEEEEEEEEEecC-----ceeccCcceEeeeeeehhheeeeeeeeecccccccccCCCeeecCCcEEEEEEecCCcE
Confidence 7999999999999997 489999999999999776654433 24799999999999999999999
Q ss_pred ecccC------CeEEEeC
Q psy5021 1010 AIEIG------LRFAIRE 1021 (1021)
Q Consensus 1010 ~~~~~------~rf~lr~ 1021 (1021)
|++++ +||.||+
T Consensus 469 Cle~fkd~pqmgRFtLRd 486 (501)
T KOG0459|consen 469 CLETFKDYPQMGRFTLRD 486 (501)
T ss_pred ehhhcccchhhcceEEec
Confidence 99997 7999997
No 48
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=1.6e-48 Score=472.18 Aligned_cols=358 Identities=24% Similarity=0.340 Sum_probs=307.6
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccc-----------------cccccccccCCchhhhhcCceEeeeEEEEeeCC
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYG-----------------GEVRAFDTIDNAPEEKERGITISTSHVEYESEN 713 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-----------------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~ 713 (1021)
.+.++++||+|||||||+|+|+.....+.. +.+...+.+|..++|+++|+|++.....+++++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 356889999999999999999976554431 233344678999999999999999999999999
Q ss_pred eEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHHHHHHHH
Q psy5021 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEME 792 (1021)
Q Consensus 714 ~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~~~~~~~ 792 (1021)
..++|+|||||++|.++|..++..+|+++||||+..|...|+++|+.++..++++++||++||+|+++ ++++++.+..+
T Consensus 104 ~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~ 183 (632)
T PRK05506 104 RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVAD 183 (632)
T ss_pred ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888999999999985 34567778888
Q ss_pred HHHhhhccccCCCceEEEEecccccccCCCC-CccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEE
Q psy5021 793 IRELLTEYDFDGENTKIVIGSALLALEGKDD-NQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVT 871 (1021)
Q Consensus 793 ~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~-~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~ 871 (1021)
+.++++.++|. +.+++|+||++|.+.... ....|+..++|++.|.. ++.|.+..++|+||+|+++|+....+..++
T Consensus 184 i~~~~~~~~~~--~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~-~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~ 260 (632)
T PRK05506 184 YRAFAAKLGLH--DVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLET-VEIASDRNLKDFRFPVQYVNRPNLDFRGFA 260 (632)
T ss_pred HHHHHHHcCCC--CccEEEEecccCCCccccccCCCcccHhHHHHHHhc-CCCCCCcCCCCceeeEEEEEecCCCceEEE
Confidence 88888888873 578999999998655432 24578888999999987 455666678999999999987542222278
Q ss_pred EEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCC-ccceeeEEEE
Q psy5021 872 GKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS-IKSYNIFECE 950 (1021)
Q Consensus 872 G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~~~f~a~ 950 (1021)
|+|++|+|++||+|.+.|.+. +++|+||++++.++++|.|||+|+++|++ ..++++|+|||+++. +..+++|+|+
T Consensus 261 G~v~~G~l~~gd~v~i~P~~~--~~~VksI~~~~~~~~~a~aG~~v~i~l~~--~~~i~rG~vL~~~~~~~~~~~~f~a~ 336 (632)
T PRK05506 261 GTVASGVVRPGDEVVVLPSGK--TSRVKRIVTPDGDLDEAFAGQAVTLTLAD--EIDISRGDMLARADNRPEVADQFDAT 336 (632)
T ss_pred EEEecceeecCCEEEEcCCCc--eEEEEEEEECCceeCEEcCCCeEEEEecC--ccccCCccEEecCCCCCcceeEEEEE
Confidence 999999999999999999764 58999999999999999999999999985 578999999999874 6679999999
Q ss_pred EEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccC-----------CCcccccCCCeEEEEEEEceeeecccC-----
Q psy5021 951 VYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLP-----------ENVEMVLPGDNIKLNVTLLSSIAIEIG----- 1014 (1021)
Q Consensus 951 i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~g~~~~v~~~~~~pi~~~~~----- 1014 (1021)
+.+++++ ++.+||++++|+|+.+++|++... .+++++.+|+.+.|+|++++|+|++++
T Consensus 337 i~~l~~~------~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~~~p~~l~~g~~~~v~l~~~~pi~~e~~~~~~~ 410 (632)
T PRK05506 337 VVWMAEE------PLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLERLAAKTLELNEIGRCNLSTDAPIAFDPYARNRT 410 (632)
T ss_pred EEEeccc------ccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCccCCcceeCCCCEEEEEEEECCEEeeeecccccc
Confidence 9999864 688999999999999999877432 357899999999999999999999998
Q ss_pred -CeEEEeC
Q psy5021 1015 -LRFAIRE 1021 (1021)
Q Consensus 1015 -~rf~lr~ 1021 (1021)
+||+||+
T Consensus 411 lGRfilrd 418 (632)
T PRK05506 411 TGSFILID 418 (632)
T ss_pred CceEEEEe
Confidence 5799964
No 49
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=2.4e-48 Score=461.73 Aligned_cols=323 Identities=29% Similarity=0.471 Sum_probs=283.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee-CCeEEEEEecCChhhhHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES-ENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~-~~~~i~liDtpG~~~~~~~ 730 (1021)
+.+|.+||+|||||||+++|++.. +|+.++|+++|+|++..+..+.. ++..++|||||||++|.++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~-------------~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~ 67 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVN-------------ADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSN 67 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-------------CccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHH
Confidence 357999999999999999999732 48889999999999999887765 4567899999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEE
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIV 810 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii 810 (1021)
|..++..+|++++|||+++|..+||++|+.++..+++|++|||+||+|+++ +++++.+.+++.++++..++. ..+++
T Consensus 68 m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~-~~~~~~v~~ei~~~l~~~~~~--~~~ii 144 (614)
T PRK10512 68 MLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVD-EARIAEVRRQVKAVLREYGFA--EAKLF 144 (614)
T ss_pred HHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCC-HHHHHHHHHHHHHHHHhcCCC--CCcEE
Confidence 999999999999999999999999999999999999998889999999986 445666777888888777653 46899
Q ss_pred EecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeec
Q psy5021 811 IGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGY 890 (1021)
Q Consensus 811 ~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~ 890 (1021)
++||++|. |+++|+++|.+. +.+.+..+.||||+|+++|+++|.|+|++|+|.+|+|++||++.+.|.
T Consensus 145 ~VSA~tG~-----------gI~~L~~~L~~~-~~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~ 212 (614)
T PRK10512 145 VTAATEGR-----------GIDALREHLLQL-PEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGV 212 (614)
T ss_pred EEeCCCCC-----------CCHHHHHHHHHh-hccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCC
Confidence 99999883 889999999874 445566789999999999999999999999999999999999999986
Q ss_pred CCeeEEEEEEEEecccccceeccCceEEEEecc-cCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccccCCC
Q psy5021 891 KQTIKTTITGIEMFKKTLDEGLAGENVGILLRS-VKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFNGY 969 (1021)
Q Consensus 891 ~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~-~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~ 969 (1021)
+. .++|+||++|+.++++|.|||+|+++|++ ++..++++|||||+++++.++..+.+. +.+. .||+.|+
T Consensus 213 ~~--~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~~~~~~~~~~~~---l~~~-----~~l~~~~ 282 (614)
T PRK10512 213 NK--PMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADAPPEPFTRVIVE---LQTH-----TPLTQWQ 282 (614)
T ss_pred CC--cEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCCCCccceeEEEE---EcCC-----ccCCCCC
Confidence 54 58999999999999999999999999997 899999999999988777777766554 4433 4899999
Q ss_pred EEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 970 KPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 970 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
++++|+++.++.|++... +.+.+++++++|+|+..|+||+||+
T Consensus 283 ~~~~~~gt~~~~~~i~~l---------~~~~~~l~l~~p~~~~~gdr~ilr~ 325 (614)
T PRK10512 283 PLHIHHAASHVTGRVSLL---------EDNLAELVLDTPLWLADNDRLVLRD 325 (614)
T ss_pred EEEEEEcccEEEEEEEEc---------CCeEEEEEECCcccccCCCEEEEEe
Confidence 999999999999887655 3468999999999999999999996
No 50
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=1.5e-46 Score=431.04 Aligned_cols=334 Identities=35% Similarity=0.484 Sum_probs=281.2
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe--------------e----
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE--------------S---- 711 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~--------------~---- 711 (1021)
..++.+++||++||||||+++|++. .+|++++|+++|+|++..+..++ .
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~-------------~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVC 69 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCe-------------ecccCHhHHHcCceeEecccccccccccccCccccccccccc
Confidence 4578899999999999999999752 25899999999999998865432 1
Q ss_pred --------CCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeEEEEEeeccccch
Q psy5021 712 --------ENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-MPQTREHILLARQVGVPNIVVFLNKADCVQD 782 (1021)
Q Consensus 712 --------~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~ 782 (1021)
.++.++|||||||++|.++|..++..+|++++||||++|. ..|+++|+.++..++++++||++||+|+++.
T Consensus 70 ~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 70 PNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK 149 (406)
T ss_pred cccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH
Confidence 1467999999999999999999999999999999999988 8999999999999998889999999999863
Q ss_pred hhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEe
Q psy5021 783 KELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFS 862 (1021)
Q Consensus 783 ~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~ 862 (1021)
+. .....+++.++++... ...++++++||++|. |+++|+++|.+.++.|.+..++|++|+|+++|.
T Consensus 150 ~~-~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~-----------gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~ 215 (406)
T TIGR03680 150 EK-ALENYEEIKEFVKGTV--AENAPIIPVSALHNA-----------NIDALLEAIEKFIPTPERDLDKPPLMYVARSFD 215 (406)
T ss_pred HH-HHHHHHHHHhhhhhcc--cCCCeEEEEECCCCC-----------ChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEe
Confidence 22 2222345555554432 235789999999873 889999999987787778889999999999998
Q ss_pred eCC--------ceeEEEEEEEEEEeeCCCEEEEeecCC----------eeEEEEEEEEecccccceeccCceEEEEec--
Q psy5021 863 ISG--------RGTVVTGKIERGIVKNGEEIEIVGYKQ----------TIKTTITGIEMFKKTLDEGLAGENVGILLR-- 922 (1021)
Q Consensus 863 v~g--------~G~Vv~G~V~~G~l~~gd~v~i~p~~~----------~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~-- 922 (1021)
++| .|+|++|+|.+|+|++||+|.+.|.+. ...++|+||++++.++++|.|||+|+++|+
T Consensus 216 v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~ 295 (406)
T TIGR03680 216 VNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTKLD 295 (406)
T ss_pred ecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEECCEECCEEcCCCEEEEeeccC
Confidence 877 567999999999999999999999742 135799999999999999999999999984
Q ss_pred -ccCccCcccceEEeeCCC-ccceeeEEEEEEEeeccCCC----CCccccCCCEEEEEEeeceeeeeeccCCCcccccCC
Q psy5021 923 -SVKREEVERGQVLAKIGS-IKSYNIFECEVYILSKEEGG----RHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPG 996 (1021)
Q Consensus 923 -~~~~~~i~~G~vl~~~~~-~~~~~~f~a~i~~~~~~~~~----~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g 996 (1021)
+++..++++|+|||+++. |..++.|+|++.++.+..+. ...+|+.||++++|+++.+++|++...+.
T Consensus 296 ~~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~g~~~~l~~gt~~~~~~v~~~~~------- 368 (406)
T TIGR03680 296 PALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKTGEVLMLNVGTATTVGVVTSARK------- 368 (406)
T ss_pred CCCCHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCCCCEEEEEEccceEEEEEEEcCC-------
Confidence 688899999999999875 66789999999999863110 12689999999999999999988765542
Q ss_pred CeEEEEEEEceeeecccCCeEEE
Q psy5021 997 DNIKLNVTLLSSIAIEIGLRFAI 1019 (1021)
Q Consensus 997 ~~~~v~~~~~~pi~~~~~~rf~l 1019 (1021)
+ .+++++.+|+|+..|+||+|
T Consensus 369 ~--~~~l~l~~p~~~~~g~r~~~ 389 (406)
T TIGR03680 369 D--EIEVKLKRPVCAEEGDRVAI 389 (406)
T ss_pred c--EEEEEECCcEEcCCCCEEEE
Confidence 2 47888999999999999999
No 51
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=1.8e-46 Score=429.45 Aligned_cols=338 Identities=33% Similarity=0.463 Sum_probs=282.5
Q ss_pred CcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee--------------
Q psy5021 646 STDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES-------------- 711 (1021)
Q Consensus 646 ~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~-------------- 711 (1021)
...-..++.+++||.+||||||+++|++. ++|++++|+++|+|++.....+.+
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~-------------~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~ 70 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGV-------------WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTT 70 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCe-------------ecccCHhHHhcCcEEEecccccccccccccCccccccc
Confidence 44556789999999999999999999652 369999999999999987643222
Q ss_pred C------------CeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeEEEEEeecc
Q psy5021 712 E------------NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-MPQTREHILLARQVGVPNIVVFLNKAD 778 (1021)
Q Consensus 712 ~------------~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~~~ip~iIvviNK~D 778 (1021)
. .+.++|||||||++|.+++..++..+|++++|+|++++. ..++.+++..+..++++++++|+||+|
T Consensus 71 ~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~D 150 (411)
T PRK04000 71 EPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKID 150 (411)
T ss_pred cccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeec
Confidence 1 257899999999999999999999999999999999987 789999999998899877999999999
Q ss_pred ccchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEE
Q psy5021 779 CVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIE 858 (1021)
Q Consensus 779 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~ 858 (1021)
+.+.+. .....+++..+++... ..+.+++++||++|. |+++|+++|.+.++.|.+..++|++|+|+
T Consensus 151 l~~~~~-~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~-----------gI~~L~~~L~~~l~~~~~~~~~~~r~~I~ 216 (411)
T PRK04000 151 LVSKER-ALENYEQIKEFVKGTV--AENAPIIPVSALHKV-----------NIDALIEAIEEEIPTPERDLDKPPRMYVA 216 (411)
T ss_pred cccchh-HHHHHHHHHHHhcccc--CCCCeEEEEECCCCc-----------CHHHHHHHHHHhCCCCCCCCCCCceEEEE
Confidence 986322 2222345555554321 234789999999873 89999999998788787888999999999
Q ss_pred EEEeeCCc--------eeEEEEEEEEEEeeCCCEEEEeecCC----------eeEEEEEEEEecccccceeccCceEEEE
Q psy5021 859 DVFSISGR--------GTVVTGKIERGIVKNGEEIEIVGYKQ----------TIKTTITGIEMFKKTLDEGLAGENVGIL 920 (1021)
Q Consensus 859 ~~~~v~g~--------G~Vv~G~V~~G~l~~gd~v~i~p~~~----------~~~~~Vksi~~~~~~~~~a~~G~~v~l~ 920 (1021)
++|+++|. |+|++|+|.+|++++||+|.+.|.++ ...++|+||++++.++++|.|||+|+++
T Consensus 217 ~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~i~ 296 (411)
T PRK04000 217 RSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVGVG 296 (411)
T ss_pred eeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEECCEECCEEcCCCEEEEE
Confidence 99998774 56999999999999999999999753 1358999999999999999999999999
Q ss_pred ec---ccCccCcccceEEeeCCC-ccceeeEEEEEEEeeccCCCC----CccccCCCEEEEEEeeceeeeeeccCCCccc
Q psy5021 921 LR---SVKREEVERGQVLAKIGS-IKSYNIFECEVYILSKEEGGR----HTPFFNGYKPQFYFRTTDVTGICKLPENVEM 992 (1021)
Q Consensus 921 l~---~~~~~~i~~G~vl~~~~~-~~~~~~f~a~i~~~~~~~~~~----~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~ 992 (1021)
|+ +++..++++|+|||+++. ++.+++|+|++.++++..++. .++|+.||++++|+++.+++|+++..+.
T Consensus 297 l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~--- 373 (411)
T PRK04000 297 TKLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIKTGEPLMLNVGTATTVGVVTSARK--- 373 (411)
T ss_pred eccCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCCCCCEEEEEEeccEEEEEEEEcCC---
Confidence 96 677889999999999875 567899999999999721111 2589999999999999999987765542
Q ss_pred ccCCCeEEEEEEEceeeecccCCeEEE
Q psy5021 993 VLPGDNIKLNVTLLSSIAIEIGLRFAI 1019 (1021)
Q Consensus 993 l~~g~~~~v~~~~~~pi~~~~~~rf~l 1019 (1021)
+ .+++++.+|+|+++|+||+|
T Consensus 374 ----~--~~~~~l~~p~~~~~g~r~~~ 394 (411)
T PRK04000 374 ----D--EAEVKLKRPVCAEEGDRVAI 394 (411)
T ss_pred ----c--EEEEEECCcEecCCCCEEEE
Confidence 3 67888999999999999999
No 52
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-46 Score=404.14 Aligned_cols=330 Identities=33% Similarity=0.452 Sum_probs=286.8
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.+|.+||.+||||||+.++++.. .|+.++|..+|+|+|.+..+++.+++.+.|+|+|||++|+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~-------------~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~mi 68 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGV-------------TDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLL 68 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccc-------------cccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHH
Confidence 57899999999999999999854 59999999999999999999999999999999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEEe
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIG 812 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~i 812 (1021)
.++...|+|+||||+++|+..||.||+..+..+|+++.++|+||+|.++ +.+.++..+++. ..+.+ .+.+++++
T Consensus 69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d-~~r~e~~i~~Il---~~l~l--~~~~i~~~ 142 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVD-EARIEQKIKQIL---ADLSL--ANAKIFKT 142 (447)
T ss_pred hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEecccccc-HHHHHHHHHHHH---hhccc--cccccccc
Confidence 9999999999999999999999999999999999999999999999997 334444444444 33333 35678999
Q ss_pred cccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCC
Q psy5021 813 SALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQ 892 (1021)
Q Consensus 813 Sa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~ 892 (1021)
|+++| +|+++|.+.|.+....+.+..+.||+++|++.|+++|+||||+|++.+|.+++||++++.|.++
T Consensus 143 s~~~g-----------~GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k 211 (447)
T COG3276 143 SAKTG-----------RGIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINK 211 (447)
T ss_pred ccccC-----------CCHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCCC
Confidence 99988 4899999999885544677889999999999999999999999999999999999999999876
Q ss_pred eeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccccCCCEEE
Q psy5021 893 TIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQ 972 (1021)
Q Consensus 893 ~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~ 972 (1021)
. ++|||||.++.++++|.||++|+++|++++.+++.||++|+++++..++..|++++.+.... ..++..|...+
T Consensus 212 ~--v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~~~~v~~~~~~~~~i~~~~----~~~l~~~~~~h 285 (447)
T COG3276 212 E--VRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEPLEVTTRLIVELEIDPLF----KKTLKQGQPVH 285 (447)
T ss_pred e--EEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccCCCCCcceEEEEEEEecccc----ccccCCCceEE
Confidence 5 89999999999999999999999999999999999999999999888999999998887543 26899999999
Q ss_pred EEEeeceeeeeeccCCC------cccccCCCeEEEEEEEceeeecccCCeEE
Q psy5021 973 FYFRTTDVTGICKLPEN------VEMVLPGDNIKLNVTLLSSIAIEIGLRFA 1018 (1021)
Q Consensus 973 ~~~~~~~~~~~~~~~~~------~~~l~~g~~~~v~~~~~~pi~~~~~~rf~ 1018 (1021)
+|++..++++++...+. .+++..++...+.++...+.....|.|++
T Consensus 286 i~~g~~~~~~~i~~l~~~~~l~~~k~i~~~~~~~l~lr~~~a~~~~~g~rvl 337 (447)
T COG3276 286 IHVGLRSVTGRIVPLEKNAELNLVKPIALGDNDRLVLRDNSAVIKLAGARVL 337 (447)
T ss_pred EEEeccccceEeeeccccceeeeecccccccCceEEEEcccceeeeccceEE
Confidence 99999999977654332 34556666666677777776666666665
No 53
>KOG0463|consensus
Probab=100.00 E-value=1.7e-47 Score=395.91 Aligned_cols=352 Identities=22% Similarity=0.281 Sum_probs=295.2
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEE------------------
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEY------------------ 709 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~------------------ 709 (1021)
++-...++.+|.+++|||||++.|++.+. .++...+.+-+++|+||.++|.|.+...-.+
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeL--DnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~ 207 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGEL--DNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHN 207 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeeccc--ccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCc
Confidence 44457788999999999999999999554 4455555566899999999999987653211
Q ss_pred -------eeCCeEEEEEecCChhhhHHHHHHHhhh--CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Q psy5021 710 -------ESENKHYAHVDCPGHADYIKNMITGAAQ--MDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 710 -------~~~~~~i~liDtpG~~~~~~~~~~~~~~--aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~ 780 (1021)
+...+.++|||.+||++|+++++.++.. .|+.+|+|.|+.|+.+.|+||+.++.++.+| ++||++|+|++
T Consensus 208 LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VP-VfvVVTKIDMC 286 (641)
T KOG0463|consen 208 LDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVP-VFVVVTKIDMC 286 (641)
T ss_pred ccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCc-EEEEEEeeccC
Confidence 1223678999999999999999999864 6999999999999999999999999999999 88899999999
Q ss_pred chhhHHHHHHHHHHHhhhccccCC---------------------CceEEEEecccccccCCCCCccCcchHHHHHHhhh
Q psy5021 781 QDKELLDLVEMEIRELLTEYDFDG---------------------ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLD 839 (1021)
Q Consensus 781 ~~~~~~~~~~~~~~~~l~~~~~~~---------------------~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~ 839 (1021)
.. ..+++..+.+..+++.-|... .-+|||.+|..+|. |++-|... .
T Consensus 287 PA-NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~-----------NL~LLkmF-L 353 (641)
T KOG0463|consen 287 PA-NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGT-----------NLPLLKMF-L 353 (641)
T ss_pred cH-HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCC-----------ChHHHHHH-H
Confidence 73 345555566667776544221 12577778877763 55544433 3
Q ss_pred ccCCC-CCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeec--CCeeEEEEEEEEecccccceeccCce
Q psy5021 840 SSIPT-PNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGY--KQTIKTTITGIEMFKKTLDEGLAGEN 916 (1021)
Q Consensus 840 ~~l~~-~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~--~~~~~~~Vksi~~~~~~~~~a~~G~~ 916 (1021)
+.++. ..-..+.|..|.|+++|.++|+|+|++|++.+|+|+.+|.++++|. +.++...|||||..+-++..+.+||.
T Consensus 354 Nlls~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcGQt 433 (641)
T KOG0463|consen 354 NLLSLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCGQT 433 (641)
T ss_pred hhcCcccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhccccceEEeccch
Confidence 43432 1224567999999999999999999999999999999999999874 56889999999999999999999999
Q ss_pred EEEEecccCccCcccceEEeeCC-CccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccCCCcccccC
Q psy5021 917 VGILLRSVKREEVERGQVLAKIG-SIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLP 995 (1021)
Q Consensus 917 v~l~l~~~~~~~i~~G~vl~~~~-~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~ 995 (1021)
+.++|+.++..++++|+|+.++. .|.++|.|+|+|.+++|+ ++|++.||+++||++++|+|.+..+. .+||+.
T Consensus 434 ASFALKKIkr~~vRKGMVmVsp~lkPqAsweFEaEILVLHHP-----TTIsprYQAMvHcGSiRQTAtivsM~-kdcLRT 507 (641)
T KOG0463|consen 434 ASFALKKIKRKDVRKGMVMVSPKLKPQASWEFEAEILVLHHP-----TTISPRYQAMVHCGSIRQTATIVSMG-KDCLRT 507 (641)
T ss_pred hhhHhhhcchhhhhcceEEecCCCCcceeeEEeeeEEEEecC-----CccCcchhheeeeccccceeeeeecC-hhhhhc
Confidence 99999999999999999999998 599999999999999998 79999999999999999998775554 599999
Q ss_pred CCeEEEEEEEc-eeeecccCCeEEEeC
Q psy5021 996 GDNIKLNVTLL-SSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 996 g~~~~v~~~~~-~pi~~~~~~rf~lr~ 1021 (1021)
||++.|+|+|. .|.++.+++|.++||
T Consensus 508 GDka~V~FrFIkqPEYir~gqrlVFRE 534 (641)
T KOG0463|consen 508 GDKAKVQFRFIKQPEYIRPGQRLVFRE 534 (641)
T ss_pred CCcceEEEEEecCcceecCCceEEeec
Confidence 99999999977 799999999999997
No 54
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=7.2e-46 Score=399.55 Aligned_cols=258 Identities=28% Similarity=0.503 Sum_probs=241.6
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc----CCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEE
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH----HGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINII 82 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~----~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~li 82 (1021)
++|||+|+||+|+|||||+++|++.+|.+.+.|.++ .+++++|+.+.|++||+|+..+..++.|+ ++++++|
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~----~~~i~li 76 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR----DCVINLL 76 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC----CEEEEEE
Confidence 589999999999999999999999999999999987 58889999999999999999999999999 9999999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCcee
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVL 162 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~ 162 (1021)
|||||.+|..++..+++.+|++|+|+|++.+++.+++.+|+.+...++|+++|+||+|+..+++.++++++++.++..++
T Consensus 77 DTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~ 156 (267)
T cd04169 77 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGIDCT 156 (267)
T ss_pred ECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCce
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred eeeeecccCCceeeEEecccceeeeecC--CC--eeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHH
Q psy5021 163 PINFNIGIEENYEGIVDIINKKSFFWKE--NS--IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSIND 237 (1021)
Q Consensus 163 ~~~~p~~~~~~~~g~id~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~ 237 (1021)
++++|++.++.|.|++|++++++|.|.. +. ....++|++.. |.+++.||+|||+|+++ +++.++
T Consensus 157 ~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~-----------e~~~e~~~~l~e~~~e~~~~~~~~ 225 (267)
T cd04169 157 PLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDD-----------PKLDELGGDLAEQLREELELLEGA 225 (267)
T ss_pred eEEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccH-----------HHHHhcCHHHHHHHhCCCccchhh
Confidence 9999999999999999999999999933 22 34455565432 78899999999999999 888889
Q ss_pred HHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCC
Q psy5021 238 IKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSP 279 (1021)
Q Consensus 238 ~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p 279 (1021)
+...+++++..+.++|||||||.+|.|++.|||+|++++|+|
T Consensus 226 ~~~~~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 226 GPEFDQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred hHHHhHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 999999999999999999999999999999999999999998
No 55
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=5e-45 Score=432.94 Aligned_cols=323 Identities=30% Similarity=0.446 Sum_probs=273.2
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.++++|++|||||||+++|++.. +++.++|+.+|+|++..+..+++++..++|||||||++|.++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~-------------~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~ 67 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIA-------------ADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNA 67 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc-------------CcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHH
Confidence 357899999999999999999732 4777889999999999999999988999999999999999999
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEE
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVI 811 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~ 811 (1021)
..++.++|++++|||+++|..+|+.+|+.++..+|+|++|||+||+|+++ ++.++.+.+++.++++.+++.. +.++++
T Consensus 68 ~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~-~~~~~~~~~ei~~~l~~~~~~~-~~~ii~ 145 (581)
T TIGR00475 68 IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVN-EEEIKRTEMFMKQILNSYIFLK-NAKIFK 145 (581)
T ss_pred HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCC-HHHHHHHHHHHHHHHHHhCCCC-CCcEEE
Confidence 99999999999999999999999999999999999999999999999986 4445566677888887766532 478999
Q ss_pred ecccccccCCCCCccCcchHHHHHHhhhccCCCC-CCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeec
Q psy5021 812 GSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP-NRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGY 890 (1021)
Q Consensus 812 iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~-~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~ 890 (1021)
+||++|. |++++++.|.+.+... ....+.||+|+|+++|+++|.|+|++|+|.+|++++||++.+.|.
T Consensus 146 vSA~tG~-----------GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~ 214 (581)
T TIGR00475 146 TSAKTGQ-----------GIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPI 214 (581)
T ss_pred EeCCCCC-----------CchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCC
Confidence 9999884 5666666655433211 112578999999999999999999999999999999999999997
Q ss_pred CCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccccCCCE
Q psy5021 891 KQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFNGYK 970 (1021)
Q Consensus 891 ~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~ 970 (1021)
+. .++|+||+.+++++++|.|||+|+++|++++.+++++|.+++++..+ +..+.+.+.. . .+|+.||.
T Consensus 215 ~~--~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~~--~~~~~~~~~~---~-----~~l~~~~~ 282 (581)
T TIGR00475 215 NH--EVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPEDP--KLRVVVKFIA---E-----VPLLELQP 282 (581)
T ss_pred Cc--eEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCCC--CceEEEEEEc---C-----CccCCCCe
Confidence 54 58999999999999999999999999999999999999888765422 2233333222 1 37999999
Q ss_pred EEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 971 PQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 971 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+++|+++.++.|++...+. ..+++++++|+++..|+||++|+
T Consensus 283 ~~~~~gt~~~~~~i~~l~~---------~~~~l~l~~P~~~~~gd~~i~r~ 324 (581)
T TIGR00475 283 YHIAHGMSVTTGKISLLDK---------GIALLTLDAPLILAKGDKLVLRD 324 (581)
T ss_pred EEEEEeceEEEEEEEEccC---------cEEEEEECCceecCCCCEEEEEe
Confidence 9999999999988766543 17889999999999999999996
No 56
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=100.00 E-value=1.6e-43 Score=385.85 Aligned_cols=266 Identities=30% Similarity=0.633 Sum_probs=256.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
||+|+||+|+|||||+++|++..+.+.+.|++..|++.+|+.+.|++|++|+.++...+.|. ++.+++||||||.+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~----~~~i~liDtPG~~~ 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK----GHKINLIDTPGYAD 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC----CEEEEEEECcCHHH
Confidence 79999999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeeeeecc
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIG 169 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p~~ 169 (1021)
|..++..+++.+|++++|+|++.+...++..+|+++...++|.++|+||+|+.++++.+.++++++.++.++++.++|++
T Consensus 77 f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~ 156 (268)
T cd04170 77 FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIG 156 (268)
T ss_pred HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEecccceeeeecCCC-eeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHHHHHHHHHh
Q psy5021 170 IEENYEGIVDIINKKSFFWKENS-IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSIRKLVL 247 (1021)
Q Consensus 170 ~~~~~~g~id~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~~~~~~~~~ 247 (1021)
.++.|.|++|++.++.+.|.++. ....++|++..+.+.++|.+|+|.+++.||+|||+||++ +++++++...+++++.
T Consensus 157 ~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~~~~~ 236 (268)
T cd04170 157 EGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLRRALR 236 (268)
T ss_pred CCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999996544 566789999999999999999999999999999999999 9999999999999999
Q ss_pred cCceeEEEeccccCcccHHHHHHHHHHhCCCC
Q psy5021 248 KNKIIPIMCGSSLKNKGIEFLLNSICEYLPSP 279 (1021)
Q Consensus 248 ~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p 279 (1021)
.+.++|||||||+++.|++.|++++.+++|+|
T Consensus 237 ~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 237 AGLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred hCCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999998
No 57
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=3.7e-43 Score=372.50 Aligned_cols=236 Identities=44% Similarity=0.684 Sum_probs=221.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
||+++||+|+|||||+++|++.+|.+.+.|+++.+++++|+.+.|++||+|+......+.|+ ++++++||||||.+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~----~~~i~liDTPG~~~ 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWE----DTKVNLIDTPGHMD 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEEC----CEEEEEEeCCCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeeeeecc
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIG 169 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p~~ 169 (1021)
|..++.++++.+|++++|+|+++|++.+++.+|+.+...++|+++|+||+|+.+++++++++++++.++.+++|+|+|+.
T Consensus 77 f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~ 156 (237)
T cd04168 77 FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL 156 (237)
T ss_pred hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999941
Q ss_pred cCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Q psy5021 170 IEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSIRKLVLK 248 (1021)
Q Consensus 170 ~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~~~~~~~~~~ 248 (1021)
++... . ..+++++|+|.+++.||+|||+||++ +++.+++.+++++++..
T Consensus 157 --------~~~~~-----------~-----------~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~ 206 (237)
T cd04168 157 --------APNIC-----------E-----------TNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAK 206 (237)
T ss_pred --------eeeee-----------e-----------eeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 11100 0 11234789999999999999999999 99999999999999999
Q ss_pred CceeEEEeccccCcccHHHHHHHHHHhCCCC
Q psy5021 249 NKIIPIMCGSSLKNKGIEFLLNSICEYLPSP 279 (1021)
Q Consensus 249 ~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p 279 (1021)
+.++|||||||.++.|++.||++|++++|+|
T Consensus 207 ~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 207 RKVFPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred CCeEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999998
No 58
>KOG1143|consensus
Probab=100.00 E-value=3e-40 Score=342.33 Aligned_cols=442 Identities=21% Similarity=0.261 Sum_probs=338.0
Q ss_pred hhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeeccCCC-CHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCC
Q psy5021 526 KEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDS-SEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPS 604 (1021)
Q Consensus 526 ~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~~s-~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~ 604 (1021)
.+-++.+..-..|-+.+|- |+.+..+.|. |+.+-..-+ .++--...+-+-+.+++-..-.+|-| -+|.+-.
T Consensus 74 ~~r~~hlitqMKWRLrEG~--GEAiYeIGVe--D~G~l~GL~deemnaSL~TL~~MA~~lGAs~~vLre----k~v~~~~ 145 (591)
T KOG1143|consen 74 TSRIQHLITQMKWRLREGQ--GEAIYEIGVE--DGGILSGLTDEEMNASLRTLRTMAQALGASMVVLRE----KDVTVKG 145 (591)
T ss_pred HHHHHHHHHHHHhhhhcCC--CcEEEEeeec--cCceeeccCHHHHHHHHHHHHHHHHHhCCceEEEEe----eeeeccC
Confidence 4567888899999999994 8887655543 444432211 12211112223333444322223332 2444444
Q ss_pred ccHhhHHHHHHcCCcEEeeeeecCCeEEEEEEcchhhhccCCcccccceeeeeeeeeccchhhhhhhccccccccccccc
Q psy5021 605 EFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVR 684 (1021)
Q Consensus 605 ~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~ 684 (1021)
+.--.|...|-+ .+|-.+ +.-....+..|..++|||||++.|+..+.+.+++ +
T Consensus 146 ~~~R~v~EVLVR-------------------KvPd~Q------qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~G--r 198 (591)
T KOG1143|consen 146 SSRRTVVEVLVR-------------------KVPDSQ------QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNG--R 198 (591)
T ss_pred CCcchhhhhhhh-------------------hCCCcc------cceEEEEEEecCcccCcceeeeeeecccccCCCC--e
Confidence 433344444433 122221 1223566788889999999999999966554444 4
Q ss_pred cccccCCchhhhhcCceEeeeEEEE---------------------eeCCeEEEEEecCChhhhHHHHHHHhhh--CCEE
Q psy5021 685 AFDTIDNAPEEKERGITISTSHVEY---------------------ESENKHYAHVDCPGHADYIKNMITGAAQ--MDGA 741 (1021)
Q Consensus 685 ~~~~~d~~~~e~~~G~Ti~~~~~~~---------------------~~~~~~i~liDtpG~~~~~~~~~~~~~~--aD~a 741 (1021)
+...++++.||.+.|.|..+..-.+ +.+.+.++|+|.+||.+|.++++.++.. .|+|
T Consensus 199 ARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A 278 (591)
T KOG1143|consen 199 ARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFA 278 (591)
T ss_pred eeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceE
Confidence 5556899999999999987775432 2345789999999999999999999965 6999
Q ss_pred EEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC-----------------
Q psy5021 742 ILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG----------------- 804 (1021)
Q Consensus 742 ilVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~----------------- 804 (1021)
+|||+|+.|....|+||+.++.++++| ++|+++|||++. ..-.+...+++.+++.+.|...
T Consensus 279 ~LvVsA~~Gi~~tTrEHLgl~~AL~iP-fFvlvtK~Dl~~-~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~ 356 (591)
T KOG1143|consen 279 CLVVSADRGITWTTREHLGLIAALNIP-FFVLVTKMDLVD-RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQE 356 (591)
T ss_pred EEEEEcCCCCccccHHHHHHHHHhCCC-eEEEEEeecccc-chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHH
Confidence 999999999999999999999999999 888999999997 3345667778888888766432
Q ss_pred ----CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCC------CCCCCCeeEEEEEEEeeCCceeEEEEEE
Q psy5021 805 ----ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPN------RITDKPFLMPIEDVFSISGRGTVVTGKI 874 (1021)
Q Consensus 805 ----~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~------~~~~~p~~~~I~~~~~v~g~G~Vv~G~V 874 (1021)
..+|++.+|..+| ++++.| ..+.+.+++.- +....|..|.|+++|+++.+|+|+.|.+
T Consensus 357 ~~s~nivPif~vSsVsG-----------egl~ll-~~fLn~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~L 424 (591)
T KOG1143|consen 357 LCSGNIVPIFAVSSVSG-----------EGLRLL-RTFLNCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGML 424 (591)
T ss_pred hccCCceeEEEEeecCc-----------cchhHH-HHHHhhcCCcCChHHHHHHhcCcceeeHhHeecCCccccccccee
Confidence 2357777777766 244433 33333333211 1235688999999999999999999999
Q ss_pred EEEEeeCCCEEEEeecC--CeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCC-CccceeeEEEEE
Q psy5021 875 ERGIVKNGEEIEIVGYK--QTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG-SIKSYNIFECEV 951 (1021)
Q Consensus 875 ~~G~l~~gd~v~i~p~~--~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~-~~~~~~~f~a~i 951 (1021)
.+|.++.|+.+.++|.+ .+.+.+|.||+.++.++..+.|||.+.|+|..-+...+++|||+..++ +|..+..|+|++
T Consensus 425 s~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~ 504 (591)
T KOG1143|consen 425 SEGQLHEGADVLVGPMKDGTFEKITVGSIRRNRQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEIDHNPPVCYEFTANL 504 (591)
T ss_pred eeceeccCceeEeecCCCCceeEEEeeeeeccccceeeecCccceeeeccCCCccchhcceEEeecCCCCceEEEEeeee
Confidence 99999999999999854 578899999999999999999999999999987788899999999876 699999999999
Q ss_pred EEeeccCCCCCccccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEE-ceeeecccCCeEEEeC
Q psy5021 952 YILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTL-LSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 952 ~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~-~~pi~~~~~~rf~lr~ 1021 (1021)
.++-|. +.|..|+|.++|+++.+++|.++-....++|++|++|.|.|.| .+|.++.+|.|++|||
T Consensus 505 ~lLfHa-----T~i~~GFQ~TVhiGsvrqTAvi~~I~~~d~lrtg~~AvV~f~F~~hPEyir~G~~ilfRe 570 (591)
T KOG1143|consen 505 LLLFHA-----TYICEGFQATVHIGSVRQTAVITHIDDADCLRTGKWAVVKFCFAYHPEYIREGSPILFRE 570 (591)
T ss_pred hhhhhh-----HhheecceEEEEEcceeeeeeeeeecccccccCCceEEEEEEecCCchhccCCCeeeeec
Confidence 999997 6999999999999999999988877788999999999999995 5999999999999996
No 59
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-37 Score=318.78 Aligned_cols=334 Identities=32% Similarity=0.475 Sum_probs=279.4
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe--------------e----
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE--------------S---- 711 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~--------------~---- 711 (1021)
....+|.+||++||||||..+|++. ++|+|++|.+||+|+.+.+.... .
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGv-------------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C 75 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGV-------------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKC 75 (415)
T ss_pred cceEeeeeeecccchhhheehhhce-------------eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCC
Confidence 4578999999999999999999985 37999999999999988864210 0
Q ss_pred --------CCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCCeEEEEEeeccccch
Q psy5021 712 --------ENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-PMPQTREHILLARQVGVPNIVVFLNKADCVQD 782 (1021)
Q Consensus 712 --------~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g-~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~ 782 (1021)
--+.+.|+|+|||+-.+.+|++++.-.|+|+|||+|++. +++||+||+..+...|++++|++.||+|++..
T Consensus 76 ~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~ 155 (415)
T COG5257 76 PNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSR 155 (415)
T ss_pred CCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecH
Confidence 017889999999999999999999999999999999974 68999999999999999999999999999984
Q ss_pred hhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEe
Q psy5021 783 KELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFS 862 (1021)
Q Consensus 783 ~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~ 862 (1021)
+.. .+..+++++|++.. ..++.|++|+||..+. |++.|+++|.+++|.|.++.++|.+|+|-+.|.
T Consensus 156 E~A-lE~y~qIk~FvkGt--~Ae~aPIIPiSA~~~~-----------NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFD 221 (415)
T COG5257 156 ERA-LENYEQIKEFVKGT--VAENAPIIPISAQHKA-----------NIDALIEAIEKYIPTPERDLDKPPRMYVARSFD 221 (415)
T ss_pred HHH-HHHHHHHHHHhccc--ccCCCceeeehhhhcc-----------CHHHHHHHHHHhCCCCccCCCCCceEEEEeecc
Confidence 433 33446788887754 3567899999999874 899999999999999999999999999999999
Q ss_pred eCCc--------eeEEEEEEEEEEeeCCCEEEEeec------C----CeeEEEEEEEEecccccceeccCceEEEEec--
Q psy5021 863 ISGR--------GTVVTGKIERGIVKNGEEIEIVGY------K----QTIKTTITGIEMFKKTLDEGLAGENVGILLR-- 922 (1021)
Q Consensus 863 v~g~--------G~Vv~G~V~~G~l~~gd~v~i~p~------~----~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~-- 922 (1021)
+..- |-|+.|.+.+|.+++||++.|.|. + +.+.++|.|++..+.++++|.||..+++.-+
T Consensus 222 VNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~~~~~ea~PGGLvgvGT~lD 301 (415)
T COG5257 222 VNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGGEDVEEARPGGLVGVGTKLD 301 (415)
T ss_pred cCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeCCeeeeeccCCceEEEecccC
Confidence 8864 558999999999999999999882 1 2456889999999999999999999999743
Q ss_pred -ccCccCcccceEEeeCCC-ccceeeEEEEEEEeeccCC----CCCccccCCCEEEEEEeeceeeeeeccCCCcccccCC
Q psy5021 923 -SVKREEVERGQVLAKIGS-IKSYNIFECEVYILSKEEG----GRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPG 996 (1021)
Q Consensus 923 -~~~~~~i~~G~vl~~~~~-~~~~~~f~a~i~~~~~~~~----~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g 996 (1021)
.+.+.|--.|.|+..++. |+...+|+.+.+.|..-.| ....||+.|-..++.++++..-+.+....+
T Consensus 302 P~ltKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik~~E~Lml~VGtatT~GvV~~~k~------- 374 (415)
T COG5257 302 PTLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIKTNEVLMLNVGTATTVGVVTSAKK------- 374 (415)
T ss_pred cchhhhhhhccccccCCCCCCCceEEEEEEeeehhhhhCcccccccccccCCCeEEEEeecceeEEEEEEecC-------
Confidence 345677888999998886 6788899999999983321 123589999999999999887665543221
Q ss_pred CeEEEEEEEceeeecccCCeEEE
Q psy5021 997 DNIKLNVTLLSSIAIEIGLRFAI 1019 (1021)
Q Consensus 997 ~~~~v~~~~~~pi~~~~~~rf~l 1019 (1021)
| .+++.+-+|+|.+.|.|.++
T Consensus 375 d--~~ev~Lk~Pvcae~g~rvai 395 (415)
T COG5257 375 D--EIEVKLKRPVCAEIGERVAI 395 (415)
T ss_pred c--eEEEEeccceecCCCCEEEE
Confidence 2 35788889999999988776
No 60
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=2.4e-35 Score=354.45 Aligned_cols=254 Identities=25% Similarity=0.304 Sum_probs=209.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+|+||+|||||||+++|... ++.. ...+|+|......++.|. ++.++|||||
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~--------~v~~----------~e~~GIT~~iga~~v~~~----~~~ItfiDTP 345 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKT--------NVAA----------GEAGGITQHIGAYQVETN----GGKITFLDTP 345 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC--------Cccc----------cccCceeeeccEEEEEEC----CEEEEEEECC
Confidence 46689999999999999999999521 1111 124689988888888888 7899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeee
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN 165 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 165 (1021)
||.+|...+.++++.+|++|||||+.+|+..||.++|+.+...++|+|+|+||||+++++++++..++.+ ++.
T Consensus 346 Ghe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~-~~~------ 418 (787)
T PRK05306 346 GHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSE-YGL------ 418 (787)
T ss_pred CCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHH-hcc------
Confidence 9999999999999999999999999999999999999999999999999999999987776655554432 110
Q ss_pred eecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHH
Q psy5021 166 FNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKL 245 (1021)
Q Consensus 166 ~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~ 245 (1021)
-.++
T Consensus 419 --------------------------------------------------------------------~~e~-------- 422 (787)
T PRK05306 419 --------------------------------------------------------------------VPEE-------- 422 (787)
T ss_pred --------------------------------------------------------------------cHHH--------
Confidence 0000
Q ss_pred HhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCcccccc-CCCceEEEEEEEeecCCCceEEEEEEEeeEE
Q psy5021 246 VLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINL-NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFI 324 (1021)
Q Consensus 246 ~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~-~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l 324 (1021)
.+..+|++++||++|.|++.|+++|...... .+. .. ++.|+.++||+++.|+++|.++++||++|+|
T Consensus 423 --~g~~vp~vpvSAktG~GI~eLle~I~~~~e~-~~l---------~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtL 490 (787)
T PRK05306 423 --WGGDTIFVPVSAKTGEGIDELLEAILLQAEV-LEL---------KANPDRPARGTVIEAKLDKGRGPVATVLVQNGTL 490 (787)
T ss_pred --hCCCceEEEEeCCCCCCchHHHHhhhhhhhh-hhc---------ccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeE
Confidence 0223689999999999999999999753211 000 01 5789999999999999999999999999999
Q ss_pred ecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCcc-ccCCeeccC
Q psy5021 325 KVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKES-STGDTLCSL 381 (1021)
Q Consensus 325 ~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~gdtl~~~ 381 (1021)
+.||.|++.. +..+++.+.+....++++|.|||+|.|.||+++ .+||||+..
T Consensus 491 k~Gd~vv~g~-----~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~ 543 (787)
T PRK05306 491 KVGDIVVAGT-----TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVV 543 (787)
T ss_pred ecCCEEEECC-----cEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEc
Confidence 9999999853 467888888888889999999999999999998 999999853
No 61
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=2.8e-33 Score=330.28 Aligned_cols=251 Identities=25% Similarity=0.322 Sum_probs=198.1
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCce-eEEEEcCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKY-MINIIDTP 85 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~-~i~liDtP 85 (1021)
+.++|+++||+|||||||+++|....- . .+..+|+|.+.....+.|. +. .++|||||
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v--~----------------~~e~~GIT~~ig~~~v~~~----~~~~i~~iDTP 143 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKV--A----------------QGEAGGITQHIGAYHVENE----DGKMITFLDTP 143 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCc--c----------------cccCCceeecceEEEEEEC----CCcEEEEEECC
Confidence 557899999999999999999953211 0 1124578888877778886 33 89999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeee
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN 165 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 165 (1021)
||.+|...+.++++.+|++|+|+|+.+|+..||.+.|+++...++|+++++||+|++++++++....+.+ ++..
T Consensus 144 Ghe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~-~g~~----- 217 (587)
T TIGR00487 144 GHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSE-YGLV----- 217 (587)
T ss_pred CCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHH-hhhh-----
Confidence 9999999999999999999999999999999999999999999999999999999987766554433322 1100
Q ss_pred eecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHH
Q psy5021 166 FNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKL 245 (1021)
Q Consensus 166 ~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~ 245 (1021)
.+.
T Consensus 218 ---------------------------------------------------------------------~~~-------- 220 (587)
T TIGR00487 218 ---------------------------------------------------------------------PED-------- 220 (587)
T ss_pred ---------------------------------------------------------------------HHh--------
Confidence 000
Q ss_pred HhcCceeEEEeccccCcccHHHHHHHHHHh--CCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeE
Q psy5021 246 VLKNKIIPIMCGSSLKNKGIEFLLNSICEY--LPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGF 323 (1021)
Q Consensus 246 ~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~--lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~ 323 (1021)
.+.-.|++++||++|.|+++|+++|... ++.+... ++.|+.++|++++.+++.|.+++++|++|+
T Consensus 221 --~~~~~~~v~iSAktGeGI~eLl~~I~~~~~~~~l~~~-----------~~~~~~~~V~ev~~~~g~G~v~~~~V~~Gt 287 (587)
T TIGR00487 221 --WGGDTIFVPVSALTGDGIDELLDMILLQSEVEELKAN-----------PNGQASGVVIEAQLDKGRGPVATVLVQSGT 287 (587)
T ss_pred --cCCCceEEEEECCCCCChHHHHHhhhhhhhhccccCC-----------CCCCceeEEEEEEEeCCCcEEEEEEEEeCE
Confidence 0112468889999999999999999742 2211111 568999999999999999999999999999
Q ss_pred EecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCcc-ccCCeecc
Q psy5021 324 IKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKES-STGDTLCS 380 (1021)
Q Consensus 324 l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~gdtl~~ 380 (1021)
|+.||.|...+. ..+|..+ .......+++|.||+++.+.|++++ .+||+|+.
T Consensus 288 L~~Gd~iv~~~~--~~kVr~l---~~~~g~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~ 340 (587)
T TIGR00487 288 LRVGDIVVVGAA--YGRVRAM---IDENGKSVKEAGPSKPVEILGLSDVPAAGDEFIV 340 (587)
T ss_pred EeCCCEEEECCC--ccEEEEE---ECCCCCCCCEECCCCEEEEeCCCCCCCCCCEEEE
Confidence 999999998764 2345444 4444457899999999999999987 89999974
No 62
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=1.8e-33 Score=334.77 Aligned_cols=258 Identities=25% Similarity=0.280 Sum_probs=206.8
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+.++|+|+||+|||||||+++|....... +..+|+|.......+.|..++.++.++|||||
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~------------------~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTP 303 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ------------------KEAGGITQKIGAYEVEFEYKDENQKIVFLDTP 303 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc------------------ccCCccccccceEEEEEEecCCceEEEEEECC
Confidence 477999999999999999999996533321 12367887777667777644456899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeee
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN 165 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 165 (1021)
||.+|...+.++++.+|++|+|||+.+|++.||.+.|+.+...++|+|+++||+|++..+.+++.+++... +.
T Consensus 304 Ghe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~-~l------ 376 (742)
T CHL00189 304 GHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY-NL------ 376 (742)
T ss_pred cHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh-cc------
Confidence 99999999999999999999999999999999999999999999999999999999876654444333211 00
Q ss_pred eecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHH
Q psy5021 166 FNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKL 245 (1021)
Q Consensus 166 ~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~ 245 (1021)
-.++
T Consensus 377 --------------------------------------------------------------------l~e~-------- 380 (742)
T CHL00189 377 --------------------------------------------------------------------IPEK-------- 380 (742)
T ss_pred --------------------------------------------------------------------chHh--------
Confidence 0000
Q ss_pred HhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEe
Q psy5021 246 VLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIK 325 (1021)
Q Consensus 246 ~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~ 325 (1021)
.+..+|++++||++|.|+++|+++|..+.+.+.... .++.|+.++|+++..|++.|.++++||++|+|+
T Consensus 381 --~g~~vpvv~VSAktG~GIdeLle~I~~l~e~~~lk~---------~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr 449 (742)
T CHL00189 381 --WGGDTPMIPISASQGTNIDKLLETILLLAEIEDLKA---------DPTQLAQGIILEAHLDKTKGPVATILVQNGTLH 449 (742)
T ss_pred --hCCCceEEEEECCCCCCHHHHHHhhhhhhhhhcccC---------CCCCCceEEEEEEEEcCCCceEEEEEEEcCEEe
Confidence 123578999999999999999999987643211100 056789999999999999999999999999999
Q ss_pred cCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCC-ccccCCeecc
Q psy5021 326 VGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLK-ESSTGDTLCS 380 (1021)
Q Consensus 326 ~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~-~~~~gdtl~~ 380 (1021)
.||.|.+.+ +.++++.+.+....++++|.||++|.+.|++ ...+||+|.-
T Consensus 450 ~GD~vv~g~-----~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~v 500 (742)
T CHL00189 450 IGDIIVIGT-----SYAKIRGMINSLGNKINLATPSSVVEIWGLSSVPATGEHFQV 500 (742)
T ss_pred cCCEEEECC-----cceEEEEEEcCCCcCccEEcCCCceEecCcccCCCCCCEEEE
Confidence 999999875 3567788888888899999999999999994 4667887643
No 63
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.4e-34 Score=330.69 Aligned_cols=274 Identities=28% Similarity=0.393 Sum_probs=218.2
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc-CCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH-HGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~-~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~li 82 (1021)
+....+||+++||+|||||||+++|+...+. .|... ...+.+|+.++|++||+|++.+...+.++ ++.++||
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~---~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~----~~~i~~i 80 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAE---RGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE----KRHYAHV 80 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhh---hccccccchhhhcCCHHHHhcCccEEEEeeEecCC----CcEEEEE
Confidence 4567899999999999999999999854332 12211 12346999999999999999987777666 7899999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCCHHHHHHHHHHHhCCce
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGANYNNCIIDIKKKFNCIV 161 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l~~~~ 161 (1021)
|||||.+|...+.+++..+|++++|+|+.+|++.|++++|.++...++| +|+++||+|+... ++..+.+.+
T Consensus 81 DtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~--~~~~~~i~~------ 152 (394)
T PRK12736 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDD--EELLELVEM------ 152 (394)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcch--HHHHHHHHH------
Confidence 9999999999999999999999999999999999999999999999999 4678999998531 111111110
Q ss_pred eeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHH
Q psy5021 162 LPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNS 241 (1021)
Q Consensus 162 ~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~ 241 (1021)
++...
T Consensus 153 ---------------------------------------------------------------------------~i~~~ 157 (394)
T PRK12736 153 ---------------------------------------------------------------------------EVREL 157 (394)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 11111
Q ss_pred HHHHHhcCceeEEEeccccCcc--------cHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCce
Q psy5021 242 IRKLVLKNKIIPIMCGSSLKNK--------GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGS 313 (1021)
Q Consensus 242 ~~~~~~~~~~~Pv~~~Sa~~~~--------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~ 313 (1021)
+...-.....+|++++||++|. +++.|++++.+++|.|... .++||+++|++++.+++.|.
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~-----------~~~p~r~~I~~~~~~~g~G~ 226 (394)
T PRK12736 158 LSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERD-----------TDKPFLMPVEDVFTITGRGT 226 (394)
T ss_pred HHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCC-----------CCCCeEEEEEEEEecCCcEE
Confidence 1111111234789999999983 6899999999999987543 56899999999999999999
Q ss_pred EEEEEEEeeEEecCCEEEeCCC--ceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccCCeeccCC
Q psy5021 314 LSFIRIYSGFIKVGDLVYNSTK--KVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTGDTLCSLS 382 (1021)
Q Consensus 314 ~~~~RV~sG~l~~gd~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~gdtl~~~~ 382 (1021)
+++|||++|+|+.||.|+..+. +...+|++|... ..++++|.|||.+++ .|++ +++.|++||..+
T Consensus 227 Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~ 297 (394)
T PRK12736 227 VVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMF----RKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPG 297 (394)
T ss_pred EEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEEC----CEEccEECCCCEEEEEECCCcHHhCCcceEEecCC
Confidence 9999999999999999997665 556788888642 467899999999977 6764 488999999865
No 64
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=1.8e-34 Score=331.48 Aligned_cols=275 Identities=27% Similarity=0.383 Sum_probs=220.2
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+..+||+++||+|||||||+++|++..+.+.. +.....+.+|+.++|++||+|++++...+.++ +++++|+|
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~--~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----~~~~~~iD 81 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGG--AKAKKYDEIDSAPEEKARGITINTAHVEYETE----NRHYAHVD 81 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCcccc--ccccccccccCChhhhcCCEeEEccEEEEccC----CeEEEEEE
Confidence 4567899999999999999999999988776542 11223457999999999999999988888777 88999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCCHHHHHHHHHHHhCCcee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGANYNNCIIDIKKKFNCIVL 162 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~ 162 (1021)
||||.+|...+.+++..+|++++|||+.+|++.|+++++..+...++| +|+++||+|+... ++..+.+.+
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~--~~~~~~~~~------- 152 (409)
T CHL00071 82 CPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD--EELLELVEL------- 152 (409)
T ss_pred CCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH--HHHHHHHHH-------
Confidence 999999999999999999999999999999999999999999999999 5678999998632 111111111
Q ss_pred eeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHH
Q psy5021 163 PINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSI 242 (1021)
Q Consensus 163 ~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~ 242 (1021)
++...+
T Consensus 153 --------------------------------------------------------------------------~l~~~l 158 (409)
T CHL00071 153 --------------------------------------------------------------------------EVRELL 158 (409)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 111111
Q ss_pred HHHHhcCceeEEEeccccCcc------------------cHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEE
Q psy5021 243 RKLVLKNKIIPIMCGSSLKNK------------------GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFK 304 (1021)
Q Consensus 243 ~~~~~~~~~~Pv~~~Sa~~~~------------------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k 304 (1021)
...-.....+|++++||.+|. |+..|+++|.+++|.|... .+.||+++|++
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~-----------~~~p~r~~I~~ 227 (409)
T CHL00071 159 SKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERD-----------TDKPFLMAIED 227 (409)
T ss_pred HHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCC-----------CCCCEEEEEEE
Confidence 111111234788888888875 4689999999999888543 56899999999
Q ss_pred EeecCCCceEEEEEEEeeEEecCCEEEeCC--CceeeEeceEEEeecCCeeccccccCCCEEEEe--cCC--ccccCCee
Q psy5021 305 IFHDPFLGSLSFIRIYSGFIKVGDLVYNST--KKVKEKIFRILRMFANSKKDINDAHFGDIVVIV--GLK--ESSTGDTL 378 (1021)
Q Consensus 305 ~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~--~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl~--~~~~gdtl 378 (1021)
++.+++.|.+++|||++|+++.||.|...+ .+...+|++|... ..++++|.|||++++. |++ +++.||+|
T Consensus 228 v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~----~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl 303 (409)
T CHL00071 228 VFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMF----QKTLDEGLAGDNVGILLRGIQKEDIERGMVL 303 (409)
T ss_pred EEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEc----CcCCCEECCCceeEEEEcCCCHHHcCCeEEE
Confidence 999999999999999999999999998643 3456788888653 2478999999999774 654 48899999
Q ss_pred ccCC
Q psy5021 379 CSLS 382 (1021)
Q Consensus 379 ~~~~ 382 (1021)
++.+
T Consensus 304 ~~~~ 307 (409)
T CHL00071 304 AKPG 307 (409)
T ss_pred ecCC
Confidence 9864
No 65
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=1.1e-34 Score=343.19 Aligned_cols=279 Identities=30% Similarity=0.414 Sum_probs=233.9
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
+++++||++||||||+++|+.....+.....-..+++|..++|+++|+|+......+++++..++|||||||.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 57899999999999999999754433322111224789999999999999999999999999999999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC--ceEEE
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE--NTKIV 810 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~ii 810 (1021)
.+++.+|+++|||||.+|+..|++++|..+...++| +|||+||+|+.+ .+++++.+++.+++..++...+ .++++
T Consensus 83 ~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip-~IVviNKiD~~~--a~~~~v~~ei~~l~~~~g~~~e~l~~pvl 159 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPS--ARPDEVVDEVFDLFAELGADDEQLDFPIV 159 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCC-EEEEEECCCCCC--cCHHHHHHHHHHHHHhhccccccccCcEE
Confidence 999999999999999999999999999999999999 788999999864 2345556677777766655332 46899
Q ss_pred EecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeec
Q psy5021 811 IGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGY 890 (1021)
Q Consensus 811 ~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~ 890 (1021)
++||++|.+..+.. ....++..|++.+.+.+|.|....+.||+++|++++..++.|+++.|+|.+|+|++||.|.+.|.
T Consensus 160 ~~SA~~g~~~~~~~-~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~ 238 (594)
T TIGR01394 160 YASGRAGWASLDLD-DPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKR 238 (594)
T ss_pred echhhcCcccccCc-ccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecC
Confidence 99999885432221 12247889999999999988777789999999999999999999999999999999999999986
Q ss_pred C-CeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 891 K-QTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 891 ~-~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
+ +..+.+|++|+.+ +.+++.|.|||+|+++ + .+++.+||+||+++
T Consensus 239 ~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~--g--l~~i~~Gdtl~~~~ 288 (594)
T TIGR01394 239 DGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA--G--LEDINIGETIADPE 288 (594)
T ss_pred CCceeEEEEEEEEEccCCCceECCEECCCCEEEEe--C--CcccCCCCEEeCCC
Confidence 3 3446789999976 5689999999999876 4 46799999999765
No 66
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=3.1e-34 Score=313.92 Aligned_cols=144 Identities=27% Similarity=0.381 Sum_probs=124.7
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh--------
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD-------- 726 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~-------- 726 (1021)
+++|.+|+|||||+|+|++++..+.+. ..|+|.|.....++++++.+.|+||+|.++
T Consensus 182 aiiGrPNvGKSsLiN~ilgeeR~Iv~~---------------~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~ 246 (444)
T COG1160 182 AIIGRPNVGKSSLINAILGEERVIVSD---------------IAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESV 246 (444)
T ss_pred EEEeCCCCCchHHHHHhccCceEEecC---------------CCCccccceeeeEEECCeEEEEEECCCCCcccccccce
Confidence 466779999999999999987666544 449999999999999999999999999544
Q ss_pred --h-HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHHHHHHHHHHHhhhcccc
Q psy5021 727 --Y-IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 727 --~-~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
| +..+...+..||+++||+||++|...|....+.++...|.+ +|+|+||||+.+ ++...+..+.++...+..++|
T Consensus 247 E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~-~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~ 325 (444)
T COG1160 247 EKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRG-IVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDF 325 (444)
T ss_pred EEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCC-eEEEEEccccCCchhhHHHHHHHHHHHHhccccC
Confidence 3 44567778999999999999999999999999999999999 888999999987 346677888888888888887
Q ss_pred CCCceEEEEecccccc
Q psy5021 803 DGENTKIVIGSALLAL 818 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~ 818 (1021)
.+++++||++|.
T Consensus 326 ----a~i~~iSA~~~~ 337 (444)
T COG1160 326 ----APIVFISALTGQ 337 (444)
T ss_pred ----CeEEEEEecCCC
Confidence 689999999884
No 67
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=3.2e-34 Score=330.52 Aligned_cols=272 Identities=23% Similarity=0.314 Sum_probs=222.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---------cccCCc----ccccChHHHhhhCceeeeeeeEEEeec
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIG---------EVHHGT----TITDWMQQEQERGITITSASVSIFWEV 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g---------~~~~~~----~~~d~~~~e~~rgiTi~~~~~~~~~~~ 72 (1021)
....||+++||+|||||||+++|++..|.+...+ ++..++ +++|+.++|++||+|++.+...+.|+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~- 83 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP- 83 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC-
Confidence 4568999999999999999999999999877643 223333 47999999999999999999999988
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-------chhHHHHHHHHhhcCCCE-EEEEeCcCCCCC
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-------QPQTETVWFQSQKYKVPK-MIFVNKMDRIGA 144 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-------~~~t~~~~~~~~~~~~p~-iiviNK~D~~~~ 144 (1021)
++.++|||||||.+|..++..++..+|++|+|||+.+|+ +.||+++|..+...++|. |+++||||++..
T Consensus 84 ---~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 ---KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTV 160 (446)
T ss_pred ---CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 899999999999999999999999999999999999997 589999999999999996 579999996543
Q ss_pred C-----HHHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcC
Q psy5021 145 N-----YNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSN 219 (1021)
Q Consensus 145 ~-----~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 219 (1021)
+ ++++.+++++.|+.
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~------------------------------------------------------------ 180 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKK------------------------------------------------------------ 180 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHh------------------------------------------------------------
Confidence 2 34444444443321
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHH------------HHHHHHHHhCCCCccccccCC
Q psy5021 220 NDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIE------------FLLNSICEYLPSPYDVDFKNN 287 (1021)
Q Consensus 220 ~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Ll~~i~~~lP~p~~~~~~~~ 287 (1021)
.-....-+|++++||.+|.|+. .|+++|... +.|...
T Consensus 181 -------------------------~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~-~~~~~~----- 229 (446)
T PTZ00141 181 -------------------------VGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL-EPPKRP----- 229 (446)
T ss_pred -------------------------cCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC-CCCCcC-----
Confidence 0000113778889999999985 489988654 444332
Q ss_pred ccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe
Q psy5021 288 DYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV 367 (1021)
Q Consensus 288 ~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~ 367 (1021)
.+.|++++|..++..++.|++..|||.+|+|+.||.|...+.+...+|..|... ..++++|.|||.+++.
T Consensus 230 ------~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v~i~ 299 (446)
T PTZ00141 230 ------VDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMH----HEQLAEAVPGDNVGFN 299 (446)
T ss_pred ------CCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEec----CcccCEECCCCEEEEE
Confidence 468999999999999999999999999999999999999988888889988643 3679999999999983
Q ss_pred --cCC--ccccCCeeccCC
Q psy5021 368 --GLK--ESSTGDTLCSLS 382 (1021)
Q Consensus 368 --gl~--~~~~gdtl~~~~ 382 (1021)
+++ +++.|++|++..
T Consensus 300 L~~i~~~~v~rG~vl~~~~ 318 (446)
T PTZ00141 300 VKNVSVKDIKRGYVASDSK 318 (446)
T ss_pred ECCCCHHHcCCceEEecCC
Confidence 432 378999999863
No 68
>KOG0461|consensus
Probab=100.00 E-value=1.4e-34 Score=297.61 Aligned_cols=339 Identities=28% Similarity=0.450 Sum_probs=269.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC---------CeEEEEEec
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE---------NKHYAHVDC 721 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~---------~~~i~liDt 721 (1021)
.+..|+.||+++|||||..+|.... + ....|+++..++||+|.|.++..+... --+++|+|+
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~------S---TaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDC 77 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELG------S---TAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDC 77 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhc------c---chhhccCCcccccceeEeecceeeecccccccCccccceeEEEeC
Confidence 3688999999999999999997632 1 123599999999999999998876432 246799999
Q ss_pred CChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhH---HHHHHHHHHHhhh
Q psy5021 722 PGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKEL---LDLVEMEIRELLT 798 (1021)
Q Consensus 722 pG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~---~~~~~~~~~~~l~ 798 (1021)
|||...+++.+.++.-.|..++|||+..|.+.||.|++.+...+..+ +|||+||+|......| ++....++++-|+
T Consensus 78 PGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~k-lvvvinkid~lpE~qr~ski~k~~kk~~KtLe 156 (522)
T KOG0461|consen 78 PGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKK-LVVVINKIDVLPENQRASKIEKSAKKVRKTLE 156 (522)
T ss_pred CCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccc-eEEEEeccccccchhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988777665 8999999998764333 4555566777788
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEE
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGI 878 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~ 878 (1021)
..+|.+ +.||+++||..|. ...+.+.+|.++|.+.+-.|.|+.+.||.|.|+.+|.++|.|+|.+|+|.+|.
T Consensus 157 ~t~f~g-~~PI~~vsa~~G~-------~~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~ 228 (522)
T KOG0461|consen 157 STGFDG-NSPIVEVSAADGY-------FKEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGV 228 (522)
T ss_pred hcCcCC-CCceeEEecCCCc-------cchhHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeE
Confidence 888864 6899999999874 34468999999999888889999999999999999999999999999999999
Q ss_pred eeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccC
Q psy5021 879 VKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEE 958 (1021)
Q Consensus 879 l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~ 958 (1021)
++.|+.+.+...+.. -+|||+++++.++..|.+||++++.+...+.+-+.||- ++.++.+.+....-+. +....
T Consensus 229 ~~ln~~iE~PAL~e~--rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~klleRgi-~~~pg~Lk~~~avl~~---vepI~ 302 (522)
T KOG0461|consen 229 LRLNTEIEFPALNEK--RKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEKLLERGI-CGPPGTLKSTKAVLAT---VEPIQ 302 (522)
T ss_pred EecCcEEeecccchh--hhhhhHHHHhhhhhhhhcccceeeeeeccCHHHHhccc-cCCCcccceeeeeeEe---ecchH
Confidence 999999999655443 57999999999999999999999999988888899985 3445444443332222 22110
Q ss_pred CCCCccccCCCEEEEEEeeceeeeeeccCC----------------------CcccccCCCeEEEEEEEceeeecccC
Q psy5021 959 GGRHTPFFNGYKPQFYFRTTDVTGICKLPE----------------------NVEMVLPGDNIKLNVTLLSSIAIEIG 1014 (1021)
Q Consensus 959 ~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~----------------------~~~~l~~g~~~~v~~~~~~pi~~~~~ 1014 (1021)
--..+|..-.+.++-++.-.+.+.|.+-. .|..+.+++..-+-+.|++|+.+-++
T Consensus 303 -yfr~~i~sk~K~Hi~VgheTVMa~~~ff~d~d~~~~tf~~~kEye~~E~d~~Pa~~~~~~~~~aL~~FEkpv~~P~~ 379 (522)
T KOG0461|consen 303 -YFRKSINSKSKIHIAVGHETVMAECQFFKDTDGTTSTFQLDKEYENGEFDMLPALLAPCDVIQALFSFEKPVFLPEY 379 (522)
T ss_pred -HHhhhhhhcceEEEEehhhhhhhheEEeeccCCcccccccchhhhccccccChhhcCCchheeeeeeecccccCccc
Confidence 00125666666666667777777775511 35667778888888889999976544
No 69
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=4.2e-34 Score=329.22 Aligned_cols=272 Identities=24% Similarity=0.311 Sum_probs=220.2
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc--ccc----CC-------cccccChHHHhhhCceeeeeeeEEEee
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIG--EVH----HG-------TTITDWMQQEQERGITITSASVSIFWE 71 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g--~~~----~~-------~~~~d~~~~e~~rgiTi~~~~~~~~~~ 71 (1021)
...-+||+++||+|||||||+++|++..|.+.+.+ .+. .+ .+++|+.++|++||+|++.+...+.|+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 34568999999999999999999999999876543 111 11 468999999999999999999889888
Q ss_pred cccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-------chhHHHHHHHHhhcCCCE-EEEEeCcCCCC
Q psy5021 72 VNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-------QPQTETVWFQSQKYKVPK-MIFVNKMDRIG 143 (1021)
Q Consensus 72 ~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-------~~~t~~~~~~~~~~~~p~-iiviNK~D~~~ 143 (1021)
++.++|||||||.+|..++..+++.+|+||+|||+.+|. ..||+++|..+...++|. |+++||||+..
T Consensus 84 ----~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 ----KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATT 159 (447)
T ss_pred ----CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCc
Confidence 899999999999999999999999999999999999983 279999999999999975 77899999862
Q ss_pred C-----CHHHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhc
Q psy5021 144 A-----NYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLS 218 (1021)
Q Consensus 144 ~-----~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 218 (1021)
. +++++++++++.+...
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~---------------------------------------------------------- 181 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKV---------------------------------------------------------- 181 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHc----------------------------------------------------------
Confidence 2 2333444444333110
Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHH------------HHHHHHHHhCCCCccccccC
Q psy5021 219 NNDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIE------------FLLNSICEYLPSPYDVDFKN 286 (1021)
Q Consensus 219 ~~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Ll~~i~~~lP~p~~~~~~~ 286 (1021)
.+. ..-+|++++||++|.|+. .|+++|.. +|.|...
T Consensus 182 -------------g~~--------------~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~-i~~p~~~---- 229 (447)
T PLN00043 182 -------------GYN--------------PDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRP---- 229 (447)
T ss_pred -------------CCC--------------cccceEEEEeccccccccccccCCcccchHHHHHHHhh-cCCCccc----
Confidence 000 012567888999999874 48888865 5555432
Q ss_pred CccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE
Q psy5021 287 NDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI 366 (1021)
Q Consensus 287 ~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i 366 (1021)
.+.||++.|..++..++.|++..|||.+|+++.||.|...+.+...+|+.|... ..++++|.|||.+++
T Consensus 230 -------~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~----~~~v~~a~aGd~v~i 298 (447)
T PLN00043 230 -------SDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMH----HESLQEALPGDNVGF 298 (447)
T ss_pred -------cCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEEC----CeEeCEecCCCeEEE
Confidence 578999999999999999999999999999999999999988888889988643 568999999999998
Q ss_pred --ecC--CccccCCeeccC
Q psy5021 367 --VGL--KESSTGDTLCSL 381 (1021)
Q Consensus 367 --~gl--~~~~~gdtl~~~ 381 (1021)
.++ +++..|+.|++.
T Consensus 299 ~l~~~~~~~i~rG~vl~~~ 317 (447)
T PLN00043 299 NVKNVAVKDLKRGYVASNS 317 (447)
T ss_pred EECCCCHhhCCCccEEccC
Confidence 454 347899999985
No 70
>KOG0462|consensus
Probab=100.00 E-value=3.7e-34 Score=312.71 Aligned_cols=329 Identities=27% Similarity=0.380 Sum_probs=267.5
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC---eEEEEEecCChhhhHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN---KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~---~~i~liDtpG~~~~~~~ 730 (1021)
.+++.|+|||||||.++|+...+.+..... .-+++|+...||+||+|+.....++.+.+ +.+++||||||-||...
T Consensus 63 fsIIAHVDHGKSTLaDrLLe~tg~i~~~~~-q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 63 FSIIAHVDHGKSTLADRLLELTGTIDNNIG-QEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred eEEEEEecCCcchHHHHHHHHhCCCCCCCc-hhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 467889999999999999987765544332 23478999999999999999998887777 88999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEE
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIV 810 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii 810 (1021)
..+.+..+|+|||||||.+|++.||...+.++.+.|+. +|.|+||+|+... +-+.++.++.+++. +. ..+.+
T Consensus 142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~-iIpVlNKIDlp~a--dpe~V~~q~~~lF~---~~--~~~~i 213 (650)
T KOG0462|consen 142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLA-IIPVLNKIDLPSA--DPERVENQLFELFD---IP--PAEVI 213 (650)
T ss_pred ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCe-EEEeeeccCCCCC--CHHHHHHHHHHHhc---CC--ccceE
Confidence 99999999999999999999999999999999999999 9999999999762 24556666666643 32 34789
Q ss_pred EecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeec
Q psy5021 811 IGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGY 890 (1021)
Q Consensus 811 ~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~ 890 (1021)
.+||++|+ ++.++|+++.+.+|+|.-..++|||+.+.+.+...+.|.++.++|..|.+++||+|...-+
T Consensus 214 ~vSAK~G~-----------~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t 282 (650)
T KOG0462|consen 214 YVSAKTGL-----------NVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAAT 282 (650)
T ss_pred EEEeccCc-----------cHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeec
Confidence 99999985 8889999999999999999999999999999999999999999999999999999999988
Q ss_pred CCeeEEEEEEEEeccc-ccceeccCceEEEEecccC-ccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccccCC
Q psy5021 891 KQTIKTTITGIEMFKK-TLDEGLAGENVGILLRSVK-REEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFNG 968 (1021)
Q Consensus 891 ~~~~~~~Vksi~~~~~-~~~~a~~G~~v~l~l~~~~-~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i~~G 968 (1021)
++.+.+++.++...+. ++....+|| ||..+.++. ..+.+.||++++..--.+ + +..|....
T Consensus 283 ~~~yev~~vgvm~p~~~~~~~l~agq-vGyIi~~mr~~~ea~IGdTi~~~~~~~~----------v------~tl~~~~~ 345 (650)
T KOG0462|consen 283 GKSYEVKVVGVMRPEMTPVVELDAGQ-VGYIICNMRNVKEAQIGDTIAHKSVTKA----------V------ETLPGFEP 345 (650)
T ss_pred CcceEeEEeEEeccCceeeeeecccc-cceeEecccccccccccceeeecccCcc----------c------CcCCCCCC
Confidence 8888888888888765 677777777 455556665 677899999986541000 0 11345566
Q ss_pred CEEEEEEeeceeee--eeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEe
Q psy5021 969 YKPQFYFRTTDVTG--ICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIR 1020 (1021)
Q Consensus 969 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr 1020 (1021)
.+|++|++.....+ ...+.+..++|..||. .+.+.-+.+-++..|+|.=+|
T Consensus 346 ~~pMvFvg~fP~dgsd~~~l~~a~erL~lnd~-sv~v~~~~s~aLg~gwr~gfl 398 (650)
T KOG0462|consen 346 TKPMVFVGLFPLDGSDYETLRDAIERLVLNDE-SVTVIKESSGALGQGWRLGFL 398 (650)
T ss_pred CcceEEeccccCccchhhhHHHHHHHHhcccc-cceeeecCCcccccceEeecc
Confidence 68889987754433 2345556788888988 567777788888888876443
No 71
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=2.5e-33 Score=321.22 Aligned_cols=274 Identities=27% Similarity=0.397 Sum_probs=216.2
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccC-CcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHH-GTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~-~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~li 82 (1021)
+.++.+||+++||+|||||||+++|++... ..|+... +.+.+|+.++|++||+|++.+...+.++ +++++||
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~----~~~~~li 80 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLA---KEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE----NRHYAHV 80 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHH---HhhcccccccccccCCHHHHhcCcceeeEEEEEcCC----CEEEEEE
Confidence 456789999999999999999999985422 2222221 2457999999999999999988777666 7899999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEE-EEEeCcCCCCCCHHHHHHHHHHHhCCce
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKM-IFVNKMDRIGANYNNCIIDIKKKFNCIV 161 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~~~~~i~~~l~~~~ 161 (1021)
|||||.+|...+.+++..+|++++|+|+.+|+..|++++|..+...++|.+ +++||||+...+ +..+.+.+
T Consensus 81 DtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~--~~~~~~~~------ 152 (394)
T TIGR00485 81 DCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVEM------ 152 (394)
T ss_pred ECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHH--HHHHHHHH------
Confidence 999999999999999999999999999999999999999999999999987 579999985321 11111110
Q ss_pred eeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHH
Q psy5021 162 LPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNS 241 (1021)
Q Consensus 162 ~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~ 241 (1021)
++...
T Consensus 153 ---------------------------------------------------------------------------~i~~~ 157 (394)
T TIGR00485 153 ---------------------------------------------------------------------------EVREL 157 (394)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 11111
Q ss_pred HHHHHhcCceeEEEeccccCcc--------cHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCce
Q psy5021 242 IRKLVLKNKIIPIMCGSSLKNK--------GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGS 313 (1021)
Q Consensus 242 ~~~~~~~~~~~Pv~~~Sa~~~~--------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~ 313 (1021)
+...-.....+|++++||+++. ++..|+++|.+++|.|... .++||+++|++++.+++.|.
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~-----------~~~p~r~~V~~vf~~~g~G~ 226 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERE-----------TDKPFLMPIEDVFSITGRGT 226 (394)
T ss_pred HHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCC-----------CCCCeEEEEEEEEeeCCceE
Confidence 1110011234789999999875 5678999999888877543 46899999999999999999
Q ss_pred EEEEEEEeeEEecCCEEEeCC--CceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccCCeeccCC
Q psy5021 314 LSFIRIYSGFIKVGDLVYNST--KKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTGDTLCSLS 382 (1021)
Q Consensus 314 ~~~~RV~sG~l~~gd~v~~~~--~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~gdtl~~~~ 382 (1021)
++.|||.+|+++.||.|+..+ .++..+|+.|... ..++++|.|||.+++ .|++ +++.|++||+..
T Consensus 227 Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~ 297 (394)
T TIGR00485 227 VVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPG 297 (394)
T ss_pred EEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEEecCC
Confidence 999999999999999999765 3566788888653 467899999999987 6663 488999999863
No 72
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-33 Score=301.22 Aligned_cols=273 Identities=27% Similarity=0.351 Sum_probs=222.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcc------------ccccc-CCcccccChHHHhhhCceeeeeeeEEEeec
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHK------------IGEVH-HGTTITDWMQQEQERGITITSASVSIFWEV 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~------------~g~~~-~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~ 72 (1021)
..--|++++||+|||||||+.+|+|..|.+.. .|.-. .-.+.+|..++|++||+|++.+..+|+.+
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~- 83 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD- 83 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC-
Confidence 44579999999999999999999999998865 22110 12678999999999999999999999988
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-------CchhHHHHHHHHhhcCCCEEE-EEeCcCCCCC
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-------IQPQTETVWFQSQKYKVPKMI-FVNKMDRIGA 144 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-------~~~~t~~~~~~~~~~~~p~ii-viNK~D~~~~ 144 (1021)
.+.++++|||||.||..++..+..+||.|||||||..| +..||+++.-.++..++.-++ ++||||....
T Consensus 84 ---k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~w 160 (428)
T COG5256 84 ---KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSW 160 (428)
T ss_pred ---CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEccccccc
Confidence 89999999999999999999999999999999999998 999999999999999988655 5999999876
Q ss_pred C---HHHHHHHHHHHh---CCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhc
Q psy5021 145 N---YNNCIIDIKKKF---NCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLS 218 (1021)
Q Consensus 145 ~---~~~~~~~i~~~l---~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 218 (1021)
+ ++++..++...+ |.++
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~--------------------------------------------------------- 183 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNP--------------------------------------------------------- 183 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCc---------------------------------------------------------
Confidence 5 333333333311 1110
Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHH------------HHHHHHHHhCCCCccccccC
Q psy5021 219 NNDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIE------------FLLNSICEYLPSPYDVDFKN 286 (1021)
Q Consensus 219 ~~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Ll~~i~~~lP~p~~~~~~~ 286 (1021)
+-+|++++||.+|.|+. .||++|- .+..|...
T Consensus 184 -------------------------------~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~~~---- 227 (428)
T COG5256 184 -------------------------------KDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPERP---- 227 (428)
T ss_pred -------------------------------cCCeEEecccccCCcccccCcCCcCccCChHHHHHh-ccCCCCCC----
Confidence 11345555888887763 5777776 55555432
Q ss_pred CccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE
Q psy5021 287 NDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI 366 (1021)
Q Consensus 287 ~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i 366 (1021)
-+.||+..|.+++.....|.+..+||.+|.|++||+|+..+.+....++++..- .++++.+.+||.+.+
T Consensus 228 -------~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~----~~~~~~a~~GD~i~~ 296 (428)
T COG5256 228 -------LDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMH----HEEISQAEPGDNVGF 296 (428)
T ss_pred -------CCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeec----ccccccCCCCCeEEE
Confidence 579999999999998888999999999999999999999998888888888543 678999999999998
Q ss_pred --ecCC--ccccCCeeccCCcccc
Q psy5021 367 --VGLK--ESSTGDTLCSLSENIQ 386 (1021)
Q Consensus 367 --~gl~--~~~~gdtl~~~~~~~~ 386 (1021)
.|++ +++.||.+++.+.++.
T Consensus 297 ~vrgv~~~dI~~Gdv~~~~~n~~t 320 (428)
T COG5256 297 NVRGVEKNDIRRGDVIGHSDNPPT 320 (428)
T ss_pred EecCCchhccCCccEeccCCCCcc
Confidence 4544 4999999999876654
No 73
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=5.6e-33 Score=320.53 Aligned_cols=273 Identities=26% Similarity=0.366 Sum_probs=218.9
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
.....+||+++||+|||||||+++|++..+.+.. ....+...+|+.++|++||+|++.....+.++ ++.++|||
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~--~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~----~~~i~liD 150 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGG--SAPKKYDEIDAAPEERARGITINTATVEYETE----NRHYAHVD 150 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhcc--ccccccccccCChhHHhCCeeEEEEEEEEecC----CcEEEEEE
Confidence 3566899999999999999999999988876643 23445678999999999999999998888887 88999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCC--HHHHHHHHHHHhCCc
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGAN--YNNCIIDIKKKFNCI 160 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~--~~~~~~~i~~~l~~~ 160 (1021)
||||.+|..++.+++..+|++++|||+.+|+..||+++|..+...++| +++++||||+...+ ++...+++++.|.
T Consensus 151 tPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~-- 228 (478)
T PLN03126 151 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLS-- 228 (478)
T ss_pred CCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999 56789999986421 1111122222221
Q ss_pred eeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHH
Q psy5021 161 VLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKN 240 (1021)
Q Consensus 161 ~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~ 240 (1021)
T Consensus 229 -------------------------------------------------------------------------------- 228 (478)
T PLN03126 229 -------------------------------------------------------------------------------- 228 (478)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCceeEEEeccccCcc------------------cHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEE
Q psy5021 241 SIRKLVLKNKIIPIMCGSSLKNK------------------GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLV 302 (1021)
Q Consensus 241 ~~~~~~~~~~~~Pv~~~Sa~~~~------------------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V 302 (1021)
+.-.....+|++++||.++. ++..|++.|.++.|.|... .+.||.++|
T Consensus 229 ---~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~-----------~~~p~r~~I 294 (478)
T PLN03126 229 ---SYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQ-----------TDLPFLLAV 294 (478)
T ss_pred ---hcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCc-----------cccceeeEE
Confidence 10001123566667776652 2568999999887766542 468999999
Q ss_pred EEEeecCCCceEEEEEEEeeEEecCCEEEeCCCc--eeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccCC
Q psy5021 303 FKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKK--VKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTGD 376 (1021)
Q Consensus 303 ~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~gd 376 (1021)
..+|..+++|.++.|+|.+|+++.||.|+..+.+ ...+|+.|... ..++++|.|||.+++ .|++ +++.|+
T Consensus 295 ~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~----~~~v~~A~aG~~v~l~L~~i~~~di~rG~ 370 (478)
T PLN03126 295 EDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMF----QKILDEALAGDNVGLLLRGIQKADIQRGM 370 (478)
T ss_pred EEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEEC----CeECCEEeCCceeeeeccCCcHHHcCCcc
Confidence 9999999999999999999999999999987654 45678887543 467999999999998 5654 388999
Q ss_pred eeccCC
Q psy5021 377 TLCSLS 382 (1021)
Q Consensus 377 tl~~~~ 382 (1021)
+|++.+
T Consensus 371 VL~~~~ 376 (478)
T PLN03126 371 VLAKPG 376 (478)
T ss_pred EEecCC
Confidence 999864
No 74
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=8.2e-33 Score=316.11 Aligned_cols=272 Identities=27% Similarity=0.386 Sum_probs=216.5
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc-cCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV-HHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~-~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~li 82 (1021)
+....+||+++||+|||||||+++|++.... .|.. ....+.+|+.++|++||+|++.+...+.++ +++++|+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~---~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----~~~i~~i 80 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAK---KGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE----KRHYAHV 80 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhh---ccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC----CeEEEEE
Confidence 4567899999999999999999999874321 1111 112347899999999999999987777666 7899999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEE-EEEeCcCCCCCC--HHHHHHHHHHHhCC
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKM-IFVNKMDRIGAN--YNNCIIDIKKKFNC 159 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~i-iviNK~D~~~~~--~~~~~~~i~~~l~~ 159 (1021)
|||||.+|...+.+++..+|++++|+|+.+|++.|++++|..+...++|.+ +++||+|+...+ ++....++++.|
T Consensus 81 DtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l-- 158 (396)
T PRK00049 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELL-- 158 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999987 579999986311 111111222221
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHH
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIK 239 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~ 239 (1021)
T Consensus 159 -------------------------------------------------------------------------------- 158 (396)
T PRK00049 159 -------------------------------------------------------------------------------- 158 (396)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCceeEEEeccccCcc----------cHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecC
Q psy5021 240 NSIRKLVLKNKIIPIMCGSSLKNK----------GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDP 309 (1021)
Q Consensus 240 ~~~~~~~~~~~~~Pv~~~Sa~~~~----------Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~ 309 (1021)
...-.....+|++++||+++. |+..|+++|.+++|.|... .++||.++|..++..+
T Consensus 159 ---~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~-----------~~~p~r~~I~~~f~v~ 224 (396)
T PRK00049 159 ---SKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERA-----------IDKPFLMPIEDVFSIS 224 (396)
T ss_pred ---HhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCC-----------CCCCeEEEEEEEEeeC
Confidence 100001124678888998864 6789999999999877543 5789999999999999
Q ss_pred CCceEEEEEEEeeEEecCCEEEeCCC--ceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccCCeeccCC
Q psy5021 310 FLGSLSFIRIYSGFIKVGDLVYNSTK--KVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTGDTLCSLS 382 (1021)
Q Consensus 310 ~~g~~~~~RV~sG~l~~gd~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~gdtl~~~~ 382 (1021)
+.|.++.|||.+|++++||.|...+. ++..+|+.|... ..++++|.|||.+++ .|++ ++..|++||+..
T Consensus 225 g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~----~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~ 299 (396)
T PRK00049 225 GRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMF----RKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPG 299 (396)
T ss_pred CceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEEC----CcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCC
Confidence 99999999999999999999987654 566788888543 367999999999998 5663 488999999964
No 75
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=9.8e-33 Score=315.84 Aligned_cols=272 Identities=26% Similarity=0.376 Sum_probs=217.0
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc-CCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH-HGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~-~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~li 82 (1021)
+.....||+++||+|||||||+++|++.... .|... ...+.+|+.++|++||+|++.+...+.++ +.+++||
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~---~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~----~~~i~~i 80 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAK---KGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA----NRHYAHV 80 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhh---cCCcccchhhhccCChhHHhcCceEEEeeeEEcCC----CcEEEEE
Confidence 5667899999999999999999999874432 22111 12357899999999999999987777776 7899999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEE-EEeCcCCCCCC--HHHHHHHHHHHhCC
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMI-FVNKMDRIGAN--YNNCIIDIKKKFNC 159 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~ii-viNK~D~~~~~--~~~~~~~i~~~l~~ 159 (1021)
|||||.+|...+.+++..+|++++|+|+.+|+..|+++++..+...++|.++ ++||+|+...+ ++....++++.+
T Consensus 81 DtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l-- 158 (396)
T PRK12735 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELL-- 158 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999999999999999999999774 79999985311 011111111111
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHH
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIK 239 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~ 239 (1021)
T Consensus 159 -------------------------------------------------------------------------------- 158 (396)
T PRK12735 159 -------------------------------------------------------------------------------- 158 (396)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCceeEEEeccccCc----------ccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecC
Q psy5021 240 NSIRKLVLKNKIIPIMCGSSLKN----------KGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDP 309 (1021)
Q Consensus 240 ~~~~~~~~~~~~~Pv~~~Sa~~~----------~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~ 309 (1021)
...-..+..+|++++||++| .|+..|+++|.+.+|.|... .++||+++|..++..+
T Consensus 159 ---~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~-----------~~~p~r~~I~~~f~v~ 224 (396)
T PRK12735 159 ---SKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERA-----------IDKPFLMPIEDVFSIS 224 (396)
T ss_pred ---HHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCcc-----------CCCCeEEEEEEEEecC
Confidence 10000112478889999998 47899999999999977543 5789999999999999
Q ss_pred CCceEEEEEEEeeEEecCCEEEeCCC--ceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccCCeeccCC
Q psy5021 310 FLGSLSFIRIYSGFIKVGDLVYNSTK--KVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTGDTLCSLS 382 (1021)
Q Consensus 310 ~~g~~~~~RV~sG~l~~gd~v~~~~~--~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~gdtl~~~~ 382 (1021)
+.|.++.|||.+|+++.||.|+..+. ++..+|..|... ..++++|.|||.+++ .|++ +++.|++||+.+
T Consensus 225 g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~ 299 (396)
T PRK12735 225 GRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPG 299 (396)
T ss_pred CceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEEC----CeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCC
Confidence 99999999999999999999997654 456778888642 468999999999998 5664 488999999864
No 76
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=3.1e-32 Score=313.26 Aligned_cols=273 Identities=27% Similarity=0.410 Sum_probs=212.7
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCc-ccccChHHHhhhCceeeeeeeEEEeecccCceeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGT-TITDWMQQEQERGITITSASVSIFWEVNKFKYMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~-~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~li 82 (1021)
.....+||+++||+|||||||+++|.... ...|+..... ..+|+.++|++||+|++.+...+.++ +++++|+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~----~~~i~~i 129 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVL---AEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA----KRHYAHV 129 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHH---HHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC----CeEEEEE
Confidence 45678999999999999999999996432 2223222222 26899999999999999988888777 8899999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCE-EEEEeCcCCCCCCHHHHHHHHHHHhCCce
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPK-MIFVNKMDRIGANYNNCIIDIKKKFNCIV 161 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i~~~l~~~~ 161 (1021)
|||||.+|...+.+++..+|++++|||+.+|+..|+++++..+...++|. |+++||||+... ++..+.+.+.+
T Consensus 130 DtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~--~~~~~~i~~~i---- 203 (447)
T PLN03127 130 DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDD--EELLELVEMEL---- 203 (447)
T ss_pred ECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCH--HHHHHHHHHHH----
Confidence 99999999999999999999999999999999999999999999999995 678999998531 11111111100
Q ss_pred eeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHH
Q psy5021 162 LPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNS 241 (1021)
Q Consensus 162 ~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~ 241 (1021)
...
T Consensus 204 -----------------------------------------------------------------------------~~~ 206 (447)
T PLN03127 204 -----------------------------------------------------------------------------REL 206 (447)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 000
Q ss_pred HHHHHhcCceeEEEecccc---Cccc-------HHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCC
Q psy5021 242 IRKLVLKNKIIPIMCGSSL---KNKG-------IEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFL 311 (1021)
Q Consensus 242 ~~~~~~~~~~~Pv~~~Sa~---~~~G-------i~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~ 311 (1021)
+...-.....+|++++||. ++.| +..|+++|.+++|.|... .++||+++|..++..++.
T Consensus 207 l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~-----------~~~pfr~~I~~vf~v~g~ 275 (447)
T PLN03127 207 LSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRV-----------LDKPFLMPIEDVFSIQGR 275 (447)
T ss_pred HHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcc-----------cccceEeeEEEEEEcCCc
Confidence 0000001224677777776 4444 789999999999987543 468999999999999999
Q ss_pred ceEEEEEEEeeEEecCCEEEeCCC----ceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccCCeeccC
Q psy5021 312 GSLSFIRIYSGFIKVGDLVYNSTK----KVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTGDTLCSL 381 (1021)
Q Consensus 312 g~~~~~RV~sG~l~~gd~v~~~~~----~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~gdtl~~~ 381 (1021)
|.++.|||.+|+++.||.|+..+. +...+|+.|... ..++++|.|||.+++ .|++ +++.|++||+.
T Consensus 276 GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 276 GTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMF----KKILDQGQAGDNVGLLLRGLKREDVQRGQVICKP 349 (447)
T ss_pred eEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEE----CcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecC
Confidence 999999999999999999987643 356788888544 346899999999998 5664 48899999986
No 77
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=1.3e-32 Score=319.37 Aligned_cols=273 Identities=25% Similarity=0.368 Sum_probs=221.8
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccc------------ccc-cCCcccccChHHHhhhCceeeeeeeEEEeec
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKI------------GEV-HHGTTITDWMQQEQERGITITSASVSIFWEV 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~------------g~~-~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~ 72 (1021)
+...||+++||+|||||||+++|++..+.+... |.. .+..+++|+.++|++||+|++.....+.++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~- 82 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD- 82 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC-
Confidence 567899999999999999999999999988653 322 223578999999999999999999999998
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCC--CCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCCH---
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASS--GIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGANY--- 146 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~--g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~~--- 146 (1021)
++.++|||||||.+|...+..+++.+|++|+|+|+++ ++..++.+++..+...++| +++++||+|+...+.
T Consensus 83 ---~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 83 ---KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred ---CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHH
Confidence 8999999999999999999999999999999999999 9999999999998888874 788999999975321
Q ss_pred HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHH
Q psy5021 147 NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLE 226 (1021)
Q Consensus 147 ~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e 226 (1021)
+...+++++.+.
T Consensus 160 ~~~~~~i~~~l~-------------------------------------------------------------------- 171 (425)
T PRK12317 160 EEVKEEVSKLLK-------------------------------------------------------------------- 171 (425)
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 122222222210
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHH------------HHHHHHHhCCCCccccccCCccccccC
Q psy5021 227 KYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEF------------LLNSICEYLPSPYDVDFKNNDYNINLN 294 (1021)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Ll~~i~~~lP~p~~~~~~~~~~~~~~~ 294 (1021)
..-.....+|++++||++|.|+++ |+++|. .+|.|... .
T Consensus 172 -----------------~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~-~~~~~~~~-----------~ 222 (425)
T PRK12317 172 -----------------MVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALD-NLKPPEKP-----------T 222 (425)
T ss_pred -----------------hhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHh-cCCCCccc-----------c
Confidence 000001135788999999999974 888875 46666432 5
Q ss_pred CCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--
Q psy5021 295 SNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK-- 370 (1021)
Q Consensus 295 ~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~-- 370 (1021)
+.||.++|..++..++.|.+..|||.+|+++.||.|...+.+...+|+.|... ..+++.|.|||.+++ .|++
T Consensus 223 ~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v~i~l~~~~~~ 298 (425)
T PRK12317 223 DKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMH----HEELPQAEPGDNIGFNVRGVGKK 298 (425)
T ss_pred CCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEEC----CcccCEECCCCeEEEEECCCCHH
Confidence 78999999999999999999999999999999999999988888889988643 467999999999987 4554
Q ss_pred ccccCCeeccCCc
Q psy5021 371 ESSTGDTLCSLSE 383 (1021)
Q Consensus 371 ~~~~gdtl~~~~~ 383 (1021)
++..|++|++...
T Consensus 299 ~i~rG~vl~~~~~ 311 (425)
T PRK12317 299 DIKRGDVCGHPDN 311 (425)
T ss_pred HccCccEecCCCC
Confidence 4789999998653
No 78
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=2.9e-32 Score=312.65 Aligned_cols=270 Identities=24% Similarity=0.253 Sum_probs=208.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcc--ccccc-----CC--------cccccChHHHhhhCceeeeeeeEEEeeccc
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHK--IGEVH-----HG--------TTITDWMQQEQERGITITSASVSIFWEVNK 74 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~--~g~~~-----~~--------~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~ 74 (1021)
||+++||+|||||||+++|++.+|.+.. .+.++ .| .+++|+.++|++||+|++.....+.|+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--- 78 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--- 78 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC---
Confidence 7999999999999999999999998876 33332 22 358999999999999999999999998
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCCHHHHHHHH
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGANYNNCIIDI 153 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i 153 (1021)
+++++|||||||.+|..++..++..+|++|+|||+.+|++.||+++|..+...++| +++|+||||+...+ .+.++++
T Consensus 79 -~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~-~~~~~~i 156 (406)
T TIGR02034 79 -KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD-EEVFENI 156 (406)
T ss_pred -CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch-HHHHHHH
Confidence 88999999999999999999999999999999999999999999999999988886 67799999986433 1222222
Q ss_pred HHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCC
Q psy5021 154 KKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNY 233 (1021)
Q Consensus 154 ~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~ 233 (1021)
.+.+.
T Consensus 157 ~~~~~--------------------------------------------------------------------------- 161 (406)
T TIGR02034 157 KKDYL--------------------------------------------------------------------------- 161 (406)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 21110
Q ss_pred CHHHHHHHHHHHHhcCceeEEEeccccCcccHHH------------HHHHHHHhCCCCccccccCCccccccCCCceEEE
Q psy5021 234 SINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEF------------LLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSL 301 (1021)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~ 301 (1021)
.-+ +.+. ...+|++++||++|.|+.. |+++|.. +|.|... .+.|+.+.
T Consensus 162 ------~~~-~~~~-~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~-~~~~~~~-----------~~~p~r~~ 221 (406)
T TIGR02034 162 ------AFA-EQLG-FRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET-VEVERDA-----------QDLPLRFP 221 (406)
T ss_pred ------HHH-HHcC-CCCccEEEeecccCCCCcccccCCCccchhHHHHHHHh-cCCCCCc-----------CCCCcccc
Confidence 000 0000 0135678889999999864 6777754 4555332 46788887
Q ss_pred EEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEec--CCccccCCeec
Q psy5021 302 VFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVG--LKESSTGDTLC 379 (1021)
Q Consensus 302 V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~g--l~~~~~gdtl~ 379 (1021)
|..++.....+.-..|+|.+|+|+.||.|...+.+...+|+.|... ..++++|.|||.+++.- ..++..|++||
T Consensus 222 i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~~G~~v~l~l~~~~~i~rG~vl~ 297 (406)
T TIGR02034 222 VQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTF----DGDLEQARAGQAVTLTLDDEIDISRGDLLA 297 (406)
T ss_pred eEEEeecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEEC----CcccCEeCCCCEEEEEECCccccCCccEEE
Confidence 7776643322222569999999999999999888888899998643 34689999999999953 34588999999
Q ss_pred cCCc
Q psy5021 380 SLSE 383 (1021)
Q Consensus 380 ~~~~ 383 (1021)
++..
T Consensus 298 ~~~~ 301 (406)
T TIGR02034 298 AADS 301 (406)
T ss_pred cCCC
Confidence 8754
No 79
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=5.6e-32 Score=319.28 Aligned_cols=280 Identities=29% Similarity=0.362 Sum_probs=230.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
-+++++||++||||||+++|+..............+.+|..+.|+++|+|+......+++++..+++||||||.+|...+
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v 85 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV 85 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence 36799999999999999999975433322211122678999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC--CceEE
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG--ENTKI 809 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~i 809 (1021)
..+++.+|++|+|||+.+|+..|++.+|..+...++| .||++||+|+.+ .+++.+.+++..++..++... ..+|+
T Consensus 86 ~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip-~IVviNKiD~~~--a~~~~vl~ei~~l~~~l~~~~~~~~~PV 162 (607)
T PRK10218 86 ERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLK-PIVVINKVDRPG--ARPDWVVDQVFDLFVNLDATDEQLDFPI 162 (607)
T ss_pred HHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCC-EEEEEECcCCCC--CchhHHHHHHHHHHhccCccccccCCCE
Confidence 9999999999999999999999999999999999999 678999999864 234555566666665544422 24789
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEee
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVG 889 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p 889 (1021)
+++||++|+++.+... ...++..|++.+.+.+|.|....+.||+++|++++..++.|+++.|+|.+|+|++||.|.+.+
T Consensus 163 i~~SA~~G~~~~~~~~-~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~ 241 (607)
T PRK10218 163 VYASALNGIAGLDHED-MAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIID 241 (607)
T ss_pred EEeEhhcCcccCCccc-cccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEec
Confidence 9999999865433221 123678899999999998887788999999999999999999999999999999999999987
Q ss_pred c-CCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 890 Y-KQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 890 ~-~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
. ++..+.+|.+|... +.++++|.|||+|+++ + .+++..||+||+++
T Consensus 242 ~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~--g--l~~~~~GdTl~~~~ 292 (607)
T PRK10218 242 SEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAIT--G--LGELNISDTVCDTQ 292 (607)
T ss_pred CCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEE--C--ccccccCcEEecCC
Confidence 5 44345778888755 5689999999999865 3 56789999998765
No 80
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.5e-32 Score=293.41 Aligned_cols=323 Identities=28% Similarity=0.395 Sum_probs=260.3
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-----CeEEEEEecCChhhhHH
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-----NKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-----~~~i~liDtpG~~~~~~ 729 (1021)
.++.|.+||||||.++|+.....+.....+ .+++|....||+||+|+......+.+. .+.++|||||||-+|.-
T Consensus 13 sIIAHIDHGKSTLaDRlle~t~~~~~Rem~-~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsY 91 (603)
T COG0481 13 SIIAHIDHGKSTLADRLLELTGGLSEREMR-AQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSY 91 (603)
T ss_pred EEEEEecCCcchHHHHHHHHhcCcChHHHH-HHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEE
Confidence 467899999999999999866555443332 346899999999999999988776553 36789999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEE
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 809 (1021)
..-+.+..|.+++|||||+.|+..||.....++..++.. +|-|+||+||...+ .+.++.++++. +|++. ...
T Consensus 92 EVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~Le-IiPViNKIDLP~Ad--pervk~eIe~~---iGid~--~da 163 (603)
T COG0481 92 EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPAAD--PERVKQEIEDI---IGIDA--SDA 163 (603)
T ss_pred EehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcE-EEEeeecccCCCCC--HHHHHHHHHHH---hCCCc--chh
Confidence 988999999999999999999999999999999999999 99999999998632 34566677666 45543 346
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEee
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVG 889 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p 889 (1021)
+.+||++|. |++++|++|.+.+|.|+...+.|++..|.+.|...+.|.|+.-+|..|++++||++.++.
T Consensus 164 v~~SAKtG~-----------gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~ 232 (603)
T COG0481 164 VLVSAKTGI-----------GIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMS 232 (603)
T ss_pred eeEecccCC-----------CHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEe
Confidence 889999985 999999999999999998999999999999999999999999999999999999999998
Q ss_pred cCCeeEEEEEEEEeccc-ccceeccCceEEEEecccC-ccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccccC
Q psy5021 890 YKQTIKTTITGIEMFKK-TLDEGLAGENVGILLRSVK-REEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFN 967 (1021)
Q Consensus 890 ~~~~~~~~Vksi~~~~~-~~~~a~~G~~v~l~l~~~~-~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i~~ 967 (1021)
.++...+.-.++..+.. ..+...+|+ ||+...+++ ..+.+.||+++....|.. + +.|=+.
T Consensus 233 tg~~y~V~evGvftP~~~~~~~L~aGe-VG~~~a~iK~v~d~~VGDTiT~~~~p~~-------------e----~LpGfk 294 (603)
T COG0481 233 TGKEYEVDEVGIFTPKMVKVDELKAGE-VGYIIAGIKDVRDARVGDTITLASNPAT-------------E----PLPGFK 294 (603)
T ss_pred cCCEEEEEEEeeccCCccccccccCCc-eeEEEEeeeecccCcccceEeccCCCcc-------------c----cCCCCC
Confidence 88887777777777754 667888888 666666664 578999999985433211 0 012122
Q ss_pred CCEEEEEEeeceeee--eeccCCCcccccCCCeEEEEEEEceeeecccCCe
Q psy5021 968 GYKPQFYFRTTDVTG--ICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLR 1016 (1021)
Q Consensus 968 G~~~~~~~~~~~~~~--~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~r 1016 (1021)
--+|++||+--.+.+ .-.+.+..+.|..||.+ ..++.+.+.++..|.|
T Consensus 295 ~~~P~Vf~GlyPid~~dye~LrdAleKL~LNDas-l~~E~EtS~ALGfGfR 344 (603)
T COG0481 295 EVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDAS-LTYEPETSQALGFGFR 344 (603)
T ss_pred cCCceEEEeecccChhHHHHHHHHHHhcccccce-eeeccccchhccCcee
Confidence 225889988644332 12345567889999995 4999999999998876
No 81
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1e-31 Score=312.17 Aligned_cols=277 Identities=25% Similarity=0.271 Sum_probs=211.1
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcc--ccccc-----CC--------cccccChHHHhhhCceeeeeeeEEE
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHK--IGEVH-----HG--------TTITDWMQQEQERGITITSASVSIF 69 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~--~g~~~-----~~--------~~~~d~~~~e~~rgiTi~~~~~~~~ 69 (1021)
.....||+|+||+|||||||+++|++.+|.+.. .+.+. .| .+++|+.++|++||+|++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 345689999999999999999999999998875 22221 22 4589999999999999999998888
Q ss_pred eecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCC-CEEEEEeCcCCCCCCHHH
Q psy5021 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV-PKMIFVNKMDRIGANYNN 148 (1021)
Q Consensus 70 ~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~-p~iiviNK~D~~~~~~~~ 148 (1021)
|+ +++++|||||||.+|..++..++..+|++|+|||+.+|+..||++++..+...++ |+|+++||||+...+ .+
T Consensus 104 ~~----~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~-~~ 178 (474)
T PRK05124 104 TE----KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYS-EE 178 (474)
T ss_pred cC----CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccch-hH
Confidence 88 8899999999999999999999999999999999999999999999999988886 467799999986433 11
Q ss_pred HHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy5021 149 CIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKY 228 (1021)
Q Consensus 149 ~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~ 228 (1021)
.+.++.+.+.
T Consensus 179 ~~~~i~~~l~---------------------------------------------------------------------- 188 (474)
T PRK05124 179 VFERIREDYL---------------------------------------------------------------------- 188 (474)
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 2222221110
Q ss_pred HcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHH------------HHHHHHHhCCCCccccccCCccccccCCC
Q psy5021 229 INNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEF------------LLNSICEYLPSPYDVDFKNNDYNINLNSN 296 (1021)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~ 296 (1021)
.-+ +.+......|++++||++|.|+.. |+++| +.+|.|... .+.
T Consensus 189 -----------~~~-~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L-~~i~~~~~~-----------~~~ 244 (474)
T PRK05124 189 -----------TFA-EQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVL-ETVDIQRVV-----------DAQ 244 (474)
T ss_pred -----------HHH-HhcCCCCCceEEEEEeecCCCcccccccccccchhhHHHHH-hhcCCCCCC-----------CCC
Confidence 000 000001236788889999999854 56644 456655432 467
Q ss_pred ceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEec--CCcccc
Q psy5021 297 KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVG--LKESST 374 (1021)
Q Consensus 297 p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~g--l~~~~~ 374 (1021)
|+++.|..++...+...-..|||.+|+|+.||+|+..+.+...+|++|... ..+++.|.|||.+++.. ..++..
T Consensus 245 p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aG~~V~l~L~~~~~i~r 320 (474)
T PRK05124 245 PFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTF----DGDLEEAFAGEAITLVLEDEIDISR 320 (474)
T ss_pred CceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEc----CccccCcCCCCEEEEEeCCccccCC
Confidence 999988887653331122459999999999999999988888899998744 23689999999999953 335889
Q ss_pred CCeeccCCcc
Q psy5021 375 GDTLCSLSEN 384 (1021)
Q Consensus 375 gdtl~~~~~~ 384 (1021)
|++||+...+
T Consensus 321 G~VL~~~~~~ 330 (474)
T PRK05124 321 GDLLVAADEA 330 (474)
T ss_pred ccEEECCCCC
Confidence 9999986533
No 82
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=2.8e-31 Score=315.40 Aligned_cols=264 Identities=27% Similarity=0.425 Sum_probs=219.8
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-----CeEEEEEecCChhhh
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-----NKHYAHVDCPGHADY 727 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-----~~~i~liDtpG~~~~ 727 (1021)
+.+++||++||||||+++|+.....+.... ...+++|..+.|+++|+|++.....+.+. ...++|||||||.+|
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~-~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISERE-MREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCcccc-ccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 578999999999999999998655444322 23457899999999999999888777553 267899999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
...+..+++.+|++|+|+|+++|...|+.++|..+...++| +|+|+||+|+.+.. .+...+++.+. +++. ..
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~--~~~~~~el~~~---lg~~--~~ 155 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLPSAD--PERVKKEIEEV---IGLD--AS 155 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCCccC--HHHHHHHHHHH---hCCC--cc
Confidence 99999999999999999999999999999999888888998 89999999986421 22233344433 3332 13
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEE
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEI 887 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i 887 (1021)
.++++||++|. |+++|+++|.+.+|.|.+..+.|++++|.+++..++.|+++.|+|.+|+|++||+|.+
T Consensus 156 ~vi~vSAktG~-----------GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~ 224 (595)
T TIGR01393 156 EAILASAKTGI-----------GIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRF 224 (595)
T ss_pred eEEEeeccCCC-----------CHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEE
Confidence 58999999884 8999999999989988888899999999999999999999999999999999999999
Q ss_pred eecCCeeEEEEEEEEecc---cccceeccCceEEEEecccC-ccCcccceEEeeCC
Q psy5021 888 VGYKQTIKTTITGIEMFK---KTLDEGLAGENVGILLRSVK-REEVERGQVLAKIG 939 (1021)
Q Consensus 888 ~p~~~~~~~~Vksi~~~~---~~~~~a~~G~~v~l~l~~~~-~~~i~~G~vl~~~~ 939 (1021)
.|.+.. .+|++|..++ .+++.+.||| +++.+++++ ..+++.||+|++.+
T Consensus 225 ~~~~~~--~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdtl~~~~ 277 (595)
T TIGR01393 225 MSTGKE--YEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDTITHVK 277 (595)
T ss_pred ecCCCe--eEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCEEECCC
Confidence 987654 6788888766 5789999999 788878774 47899999998764
No 83
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-31 Score=285.06 Aligned_cols=281 Identities=30% Similarity=0.384 Sum_probs=235.1
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.++++.|++||||||++.|++..........-.-++||....|++||+||-.+...+.|++..++++|||||.+|-....
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence 56788999999999999999876544444333445799999999999999999999999999999999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC--ceEEE
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE--NTKIV 810 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~ii 810 (1021)
+.++..|.++|+|||.+|+.+||+-.+..+.++|.+ -|||+||+|... .+-+++..+...++-.++-+.+ .+|++
T Consensus 87 Rvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~-PIVVvNKiDrp~--Arp~~Vvd~vfDLf~~L~A~deQLdFPiv 163 (603)
T COG1217 87 RVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLK-PIVVINKIDRPD--ARPDEVVDEVFDLFVELGATDEQLDFPIV 163 (603)
T ss_pred hhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCC-cEEEEeCCCCCC--CCHHHHHHHHHHHHHHhCCChhhCCCcEE
Confidence 999999999999999999999999999999999999 466889999875 3345566666666666654433 46899
Q ss_pred EecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEee-
Q psy5021 811 IGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVG- 889 (1021)
Q Consensus 811 ~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p- 889 (1021)
+-||..|+...+... ...+...|++.|.+++|.|.-..+.||+|.|...-+.+..|.+..|+|.+|++++||.|.+.-
T Consensus 164 YAS~~~G~a~~~~~~-~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~ 242 (603)
T COG1217 164 YASARNGTASLDPED-EADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKS 242 (603)
T ss_pred EeeccCceeccCccc-cccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcC
Confidence 999998865543332 223578899999999999998889999999999999999999999999999999999998863
Q ss_pred cCCeeEEEEEEEEecc----cccceeccCceEEEEecccCccCcccceEEeeCCCc
Q psy5021 890 YKQTIKTTITGIEMFK----KTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSI 941 (1021)
Q Consensus 890 ~~~~~~~~Vksi~~~~----~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~ 941 (1021)
.+.....+|..+..+. .++++|.|||.|+++ | .+++..|+.+|+++.+
T Consensus 243 ~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaia--G--~~~~~igdTi~d~~~~ 294 (603)
T COG1217 243 DGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIA--G--LEDINIGDTICDPDNP 294 (603)
T ss_pred CCcEEeeEEEeeeeccceeeeecccccccCEEEEc--C--cccccccccccCCCCc
Confidence 3445567888887764 589999999999776 4 5678899999987643
No 84
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=2.8e-31 Score=308.19 Aligned_cols=273 Identities=24% Similarity=0.368 Sum_probs=217.3
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc-------cccCC------cccccChHHHhhhCceeeeeeeEEEee
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIG-------EVHHG------TTITDWMQQEQERGITITSASVSIFWE 71 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g-------~~~~~------~~~~d~~~~e~~rgiTi~~~~~~~~~~ 71 (1021)
....+||+++||+|||||||+++|++..|.+...+ ....| .+.+|+.++|++||+|++.....+.+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 45679999999999999999999999988775321 00111 357999999999999999999999888
Q ss_pred cccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC---CchhHHHHHHHHhhcCC-CEEEEEeCcCCCCCCHH
Q psy5021 72 VNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG---IQPQTETVWFQSQKYKV-PKMIFVNKMDRIGANYN 147 (1021)
Q Consensus 72 ~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g---~~~~t~~~~~~~~~~~~-p~iiviNK~D~~~~~~~ 147 (1021)
++.++|||||||.+|...+..+++.+|++++|+|++++ ...++.+++..+...++ |+++++||+|+...+.+
T Consensus 84 ----~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 84 ----KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEE 159 (426)
T ss_pred ----CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHH
Confidence 89999999999999999999999999999999999999 78888888877777775 57788999999643321
Q ss_pred ---HHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHH
Q psy5021 148 ---NCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFF 224 (1021)
Q Consensus 148 ---~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l 224 (1021)
...+++++.+
T Consensus 160 ~~~~~~~ei~~~~------------------------------------------------------------------- 172 (426)
T TIGR00483 160 EFEAIKKEVSNLI------------------------------------------------------------------- 172 (426)
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 1112221111
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHH------------HHHHHHHhCCCCccccccCCccccc
Q psy5021 225 LEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEF------------LLNSICEYLPSPYDVDFKNNDYNIN 292 (1021)
Q Consensus 225 ~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Ll~~i~~~lP~p~~~~~~~~~~~~~ 292 (1021)
...-.....+|++.+||++|.|+.+ |+++|.. +|.|...
T Consensus 173 ------------------~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~-~~~~~~~---------- 223 (426)
T TIGR00483 173 ------------------KKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA-LEPPEKP---------- 223 (426)
T ss_pred ------------------HHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc-CCCCCCc----------
Confidence 0000011236788899999999874 9999854 5555432
Q ss_pred cCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE--ecC-
Q psy5021 293 LNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGL- 369 (1021)
Q Consensus 293 ~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl- 369 (1021)
.+.||.++|..++..++.|.++.|||.+|+++.||.|...+.+...+|+.|... ..++++|.|||.+++ .++
T Consensus 224 -~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v~i~l~~i~ 298 (426)
T TIGR00483 224 -TDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMH----HEQIEQAEPGDNIGFNVRGVS 298 (426)
T ss_pred -cCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEEC----CcccCEEcCCCEEEEEECCCC
Confidence 468999999999999999999999999999999999999888888889988643 357899999999998 454
Q ss_pred -CccccCCeeccCC
Q psy5021 370 -KESSTGDTLCSLS 382 (1021)
Q Consensus 370 -~~~~~gdtl~~~~ 382 (1021)
++++.|++|++..
T Consensus 299 ~~~i~rG~vl~~~~ 312 (426)
T TIGR00483 299 KKDIRRGDVCGHPD 312 (426)
T ss_pred hhhcccceEEecCC
Confidence 3488999998864
No 85
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.98 E-value=5e-31 Score=313.57 Aligned_cols=264 Identities=28% Similarity=0.431 Sum_probs=219.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-----CeEEEEEecCChhhh
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-----NKHYAHVDCPGHADY 727 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-----~~~i~liDtpG~~~~ 727 (1021)
+.+++||.+||||||+++|+.....+..... ..+++|..+.|+++|+|+......+.+. +..++|||||||.+|
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~-~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSEREM-KAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCccccc-ccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 6788999999999999999876544433222 3457899999999999999888777653 567899999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
...+..+++.+|++|+|||+++|...|+.++|.++...++| +|+|+||+|+.+.. .+...+++.+. +++. ..
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl~~a~--~~~v~~ei~~~---lg~~--~~ 159 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDLPAAD--PERVKQEIEDV---IGID--AS 159 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCccc--HHHHHHHHHHH---hCCC--cc
Confidence 99999999999999999999999999999999998888999 89999999986421 23333444443 3332 13
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEE
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEI 887 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i 887 (1021)
.++++||++|. |+++|+++|.+.+|.|....+.|+++.|.+++..++.|+++.|+|.+|+|++||+|.+
T Consensus 160 ~vi~iSAktG~-----------GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~ 228 (600)
T PRK05433 160 DAVLVSAKTGI-----------GIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKM 228 (600)
T ss_pred eEEEEecCCCC-----------CHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEE
Confidence 58999999884 8999999999989988888899999999999999999999999999999999999999
Q ss_pred eecCCeeEEEEEEEEec---ccccceeccCceEEEEecccC-ccCcccceEEeeCC
Q psy5021 888 VGYKQTIKTTITGIEMF---KKTLDEGLAGENVGILLRSVK-REEVERGQVLAKIG 939 (1021)
Q Consensus 888 ~p~~~~~~~~Vksi~~~---~~~~~~a~~G~~v~l~l~~~~-~~~i~~G~vl~~~~ 939 (1021)
.|.+.. .+|++|... ..+++++.||| ++..+++++ ..+++.||+|++..
T Consensus 229 ~~~~~~--~~V~~i~~~~~~~~~v~~~~aGd-Ig~i~~~ik~~~~~~~Gdtl~~~~ 281 (600)
T PRK05433 229 MSTGKE--YEVDEVGVFTPKMVPVDELSAGE-VGYIIAGIKDVRDARVGDTITLAK 281 (600)
T ss_pred ecCCce--EEEEEeeccCCCceECcEEcCCC-EEEEecccccccccCCCCEEECCC
Confidence 987654 567787765 46899999999 777767764 57899999998765
No 86
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.97 E-value=8.8e-31 Score=299.85 Aligned_cols=260 Identities=23% Similarity=0.292 Sum_probs=201.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEe-------------ec
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFW-------------EV 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-------------~~ 72 (1021)
..-.||+++||+|||||||+.+|. ...+|.+++|++||+|++....++.+ ..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLt---------------g~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~ 96 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALS---------------GVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSY 96 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHh---------------CCCcccchhhHHhCCchhccccccccccCcccCCccccccc
Confidence 345789999999999999999995 12457789999999999988776532 00
Q ss_pred c-c---------------CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-CchhHHHHHHHHhhcCCC-EEE
Q psy5021 73 N-K---------------FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-IQPQTETVWFQSQKYKVP-KMI 134 (1021)
Q Consensus 73 ~-~---------------~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-~~~~t~~~~~~~~~~~~p-~ii 134 (1021)
. + ..+.++|||||||.+|..++.+++..+|++++||||.+| +++||++++..+...++| +|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIV 176 (460)
T PTZ00327 97 GSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIII 176 (460)
T ss_pred CCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEE
Confidence 0 0 024799999999999999999999999999999999997 799999999999888886 677
Q ss_pred EEeCcCCCCCC-HHHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHH
Q psy5021 135 FVNKMDRIGAN-YNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELM 213 (1021)
Q Consensus 135 viNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 213 (1021)
|+||+|+...+ ..+..+++++.+.
T Consensus 177 vlNKiDlv~~~~~~~~~~ei~~~l~------------------------------------------------------- 201 (460)
T PTZ00327 177 LQNKIDLVKEAQAQDQYEEIRNFVK------------------------------------------------------- 201 (460)
T ss_pred EEecccccCHHHHHHHHHHHHHHHH-------------------------------------------------------
Confidence 99999986321 1222222222110
Q ss_pred HHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCcccccc
Q psy5021 214 LETLSNNDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINL 293 (1021)
Q Consensus 214 ~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~ 293 (1021)
.. .....|++++||++|.|++.|+++|.+.+|.|...
T Consensus 202 ------------------------------~~--~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~----------- 238 (460)
T PTZ00327 202 ------------------------------GT--IADNAPIIPISAQLKYNIDVVLEYICTQIPIPKRD----------- 238 (460)
T ss_pred ------------------------------hh--ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCCC-----------
Confidence 00 02356899999999999999999999999988542
Q ss_pred CCCceEEEEEEEeecC--------CCceEEEEEEEeeEEecCCEEEeCCCc-------------eeeEeceEEEeecCCe
Q psy5021 294 NSNKFVSLVFKIFHDP--------FLGSLSFIRIYSGFIKVGDLVYNSTKK-------------VKEKIFRILRMFANSK 352 (1021)
Q Consensus 294 ~~~p~~~~V~k~~~~~--------~~g~~~~~RV~sG~l~~gd~v~~~~~~-------------~~~~i~~i~~~~g~~~ 352 (1021)
.+.|+.++|..+|... ++|.+..|+|.+|++++||.|...+.+ ...+|..|.. ..
T Consensus 239 ~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~----~~ 314 (460)
T PTZ00327 239 LTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFA----EN 314 (460)
T ss_pred CCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEE----CC
Confidence 4678999998877443 379999999999999999999987643 2356777753 35
Q ss_pred eccccccCCCEEEEe-----cCC--ccccCCeeccCC
Q psy5021 353 KDINDAHFGDIVVIV-----GLK--ESSTGDTLCSLS 382 (1021)
Q Consensus 353 ~~v~~a~aGdIv~i~-----gl~--~~~~gdtl~~~~ 382 (1021)
.++++|.|||.+++. ++. ++..|+.|+.+.
T Consensus 315 ~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~ 351 (460)
T PTZ00327 315 NELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPG 351 (460)
T ss_pred eECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCC
Confidence 779999999999994 332 367899999864
No 87
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.4e-31 Score=266.29 Aligned_cols=273 Identities=27% Similarity=0.386 Sum_probs=207.5
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+...--||+.|||+|||||||+.++........ +.........|..|+|++|||||..+.+..+.. +..+..+|
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~--~~~~~~y~~id~aPeEk~rGITIntahveyet~----~rhyahVD 81 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKG--GAEAKAYDQIDNAPEEKARGITINTAHVEYETA----NRHYAHVD 81 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhc--cccccchhhhccCchHhhcCceeccceeEEecC----CceEEecc
Confidence 456678999999999999999999863221100 111112334667899999999999998877777 88999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEE-EEeCcCCCC-CCH-HHHHHHHHHHhCCc
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMI-FVNKMDRIG-ANY-NNCIIDIKKKFNCI 160 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~ii-viNK~D~~~-~~~-~~~~~~i~~~l~~~ 160 (1021)
+|||.||.+.++.+..++|++||||.|.+|.++||++++-.+++.++|.|+ |+||+|... .+. +.+-.++++.|.
T Consensus 82 cPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs-- 159 (394)
T COG0050 82 CPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLS-- 159 (394)
T ss_pred CCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999998766 599999864 222 111122222221
Q ss_pred eeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHH
Q psy5021 161 VLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKN 240 (1021)
Q Consensus 161 ~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~ 240 (1021)
T Consensus 160 -------------------------------------------------------------------------------- 159 (394)
T COG0050 160 -------------------------------------------------------------------------------- 159 (394)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCceeEEEeccccCccc--------HHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCc
Q psy5021 241 SIRKLVLKNKIIPIMCGSSLKNKG--------IEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLG 312 (1021)
Q Consensus 241 ~~~~~~~~~~~~Pv~~~Sa~~~~G--------i~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g 312 (1021)
..-..+.-.|+..+||++-.- |.+||+++.+|+|.|... .+.||++.|-.++...++|
T Consensus 160 ---~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~-----------~dkPflmpvEdvfsIsgrg 225 (394)
T COG0050 160 ---EYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD-----------IDKPFLMPVEDVFSISGRG 225 (394)
T ss_pred ---HcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc-----------ccccccccceeeEEEcCce
Confidence 111123456788888775322 689999999999999875 6799999999999999999
Q ss_pred eEEEEEEEeeEEecCCEEEeCCCc--eeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccCCeeccCC
Q psy5021 313 SLSFIRIYSGFIKVGDLVYNSTKK--VKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTGDTLCSLS 382 (1021)
Q Consensus 313 ~~~~~RV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~gdtl~~~~ 382 (1021)
.++++||-.|+|+.|+.+-...-. ++..+..+-+ -+...++..|||-+++ .|.+ ++..|..|+.+.
T Consensus 226 tvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvem----frk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpg 297 (394)
T COG0050 226 TVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEM----FRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPG 297 (394)
T ss_pred eEEEEEEeeeeeccCCEEEEecccccceeEEEhHHH----HHHHHhccccCCCcceEEEeccccceecceEeecCC
Confidence 999999999999999999865433 2223333311 1345788999998887 4543 578888888764
No 88
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.97 E-value=1.1e-29 Score=297.07 Aligned_cols=155 Identities=28% Similarity=0.335 Sum_probs=118.2
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH------
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI------ 728 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~------ 728 (1021)
+++|++++|||||+|+|++..... .....|+|.+.....+..++..+.+|||||+.++.
T Consensus 176 ~ivG~~~~GKSsLin~l~~~~~~~---------------~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~ 240 (429)
T TIGR03594 176 AIIGRPNVGKSTLVNALLGEERVI---------------VSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGV 240 (429)
T ss_pred EEECCCCCCHHHHHHHHHCCCeee---------------cCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhH
Confidence 455779999999999999753221 22345888888888888888899999999975432
Q ss_pred -----HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 -----KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 -----~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..+++.+|++|+|+|++++...++.+.+..+...+.| +|+|+||+|+.+..+..+.+.+++...+...+
T Consensus 241 e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-- 317 (429)
T TIGR03594 241 EKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKA-LVIVVNKWDLVKDEKTREEFKKELRRKLPFLD-- 317 (429)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEECcccCCCHHHHHHHHHHHHHhcccCC--
Confidence 2345678899999999999999999999999988888998 99999999998434445556666666555443
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.++++++||++|. |++++++++.+
T Consensus 318 --~~~vi~~SA~~g~-----------~v~~l~~~i~~ 341 (429)
T TIGR03594 318 --FAPIVFISALTGQ-----------GVDKLLDAIDE 341 (429)
T ss_pred --CCceEEEeCCCCC-----------CHHHHHHHHHH
Confidence 3689999999884 56666655543
No 89
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.97 E-value=3.7e-31 Score=273.09 Aligned_cols=185 Identities=39% Similarity=0.538 Sum_probs=156.2
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEE--eecccCceeEEEEc
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF--WEVNKFKYMINIID 83 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~--~~~~~~~~~i~liD 83 (1021)
+++|||+++||+|||||||+++|++..+.+...+......+.+|+.+.|++||+|+..+...+. +. ++.++|||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~----~~~i~~iD 76 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNEN----NRKITLID 76 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTES----SEEEEEEE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccccccc----ccceeecc
Confidence 4799999999999999999999999998877655544345679999999999999999999998 77 99999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||.+|..++.++++.+|++|+|||+.+|++.++.++|+.+...++|+++|+||||+...++.+.++++++.+
T Consensus 77 tPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l------ 150 (188)
T PF00009_consen 77 TPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKL------ 150 (188)
T ss_dssp ESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHH------
T ss_pred cccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHh------
Confidence 99999999999999999999999999999999999999999999999999999999998444444444444322
Q ss_pred eeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIR 243 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~ 243 (1021)
++.+
T Consensus 151 -------------------------------------------------------------~~~~--------------- 154 (188)
T PF00009_consen 151 -------------------------------------------------------------LKEY--------------- 154 (188)
T ss_dssp -------------------------------------------------------------HHHT---------------
T ss_pred -------------------------------------------------------------cccc---------------
Confidence 0000
Q ss_pred HHHhcC-ceeEEEeccccCcccHHHHHHHHHHhCCC
Q psy5021 244 KLVLKN-KIIPIMCGSSLKNKGIEFLLNSICEYLPS 278 (1021)
Q Consensus 244 ~~~~~~-~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~ 278 (1021)
...+ ..+|++++||++|.|++.|+++|.+++|+
T Consensus 155 --~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 155 --GENGEEIVPVIPISALTGDGIDELLEALVELLPS 188 (188)
T ss_dssp --TSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS--
T ss_pred --ccCccccceEEEEecCCCCCHHHHHHHHHHhCcC
Confidence 0112 36899999999999999999999999996
No 90
>KOG0460|consensus
Probab=99.97 E-value=6.5e-31 Score=271.19 Aligned_cols=271 Identities=28% Similarity=0.403 Sum_probs=209.1
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
.--||+-|||+|||||||+-++..--.. ..+.........|..|+|+.|||||..+.+..+-. .+.+--+||||
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~--~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa----~RhYaH~DCPG 126 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAE--KGGAKFKKYDEIDKAPEEKARGITINAAHVEYETA----KRHYAHTDCPG 126 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHh--ccccccccHhhhhcChhhhhccceEeeeeeeeecc----ccccccCCCCc
Confidence 3469999999999999999988531110 00011112345677899999999999876665555 77888999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEE-EEeCcCCC-CCCHHHHH-HHHHHHhCCceee
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMI-FVNKMDRI-GANYNNCI-IDIKKKFNCIVLP 163 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~ii-viNK~D~~-~~~~~~~~-~~i~~~l~~~~~~ 163 (1021)
|.||.+.++.+..+.|++|+||.|++|..+||++++-.+++.+++.|+ |+||.|.. +.+.-+.+ .++++.|.
T Consensus 127 HADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLs----- 201 (449)
T KOG0460|consen 127 HADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLS----- 201 (449)
T ss_pred hHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999765 59999986 33322221 13333321
Q ss_pred eeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIR 243 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~ 243 (1021)
T Consensus 202 -------------------------------------------------------------------------------- 201 (449)
T KOG0460|consen 202 -------------------------------------------------------------------------------- 201 (449)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCceeEEEeccccCc-------cc---HHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCce
Q psy5021 244 KLVLKNKIIPIMCGSSLKN-------KG---IEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGS 313 (1021)
Q Consensus 244 ~~~~~~~~~Pv~~~Sa~~~-------~G---i~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~ 313 (1021)
..-..+.-.||++|||+.- .| |..|||++-+|+|.|... -+.||++.|-.++..+++|+
T Consensus 202 e~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~-----------~~~pFl~pie~vfsI~GRGT 270 (449)
T KOG0460|consen 202 EFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERD-----------LDKPFLLPIEDVFSIPGRGT 270 (449)
T ss_pred HcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccc-----------cCCCceeehhheeeecCCce
Confidence 1112355688999998732 22 688999999999999764 57899999999999999999
Q ss_pred EEEEEEEeeEEecCCEEEeCCCc--eeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccCCeeccCCc
Q psy5021 314 LSFIRIYSGFIKVGDLVYNSTKK--VKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTGDTLCSLSE 383 (1021)
Q Consensus 314 ~~~~RV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~gdtl~~~~~ 383 (1021)
++.+|+-.|+|++|+.+-....+ -+..++.|-.+ +..+++|.|||-+++ .|++ +++.|..++.+..
T Consensus 271 VvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF----~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGs 342 (449)
T KOG0460|consen 271 VVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMF----RKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGS 342 (449)
T ss_pred EEEEEEeecccccCCEEEEeccCcceeeEeehHHHH----HHHHHhcccccceehhhhcCCHHHHhcccEEecCCc
Confidence 99999999999999999865444 34455555322 346899999999987 6765 5899999988764
No 91
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.7e-27 Score=263.75 Aligned_cols=247 Identities=25% Similarity=0.295 Sum_probs=193.3
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+-.-|+|+||+|||||||++.+...+-+.. ..-|||-+-.+..+.+... ....|+||||||
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~------------------EaGGITQhIGA~~v~~~~~-~~~~itFiDTPG 64 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG------------------EAGGITQHIGAYQVPLDVI-KIPGITFIDTPG 64 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccc------------------cCCceeeEeeeEEEEeccC-CCceEEEEcCCc
Confidence 456799999999999999999953332222 2347888888888877521 146899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeeee
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINF 166 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 166 (1021)
|.-|+....++...+|.++||||+.+|+++||.+.++.++..++|+++++||||++.+++.....++++. |..
T Consensus 65 HeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~-gl~------ 137 (509)
T COG0532 65 HEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY-GLV------ 137 (509)
T ss_pred HHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc-CCC------
Confidence 9999999999999999999999999999999999999999999999999999999999988887777654 211
Q ss_pred ecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy5021 167 NIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLV 246 (1021)
Q Consensus 167 p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~~ 246 (1021)
++++
T Consensus 138 --------------------------------------------------------------------~E~~-------- 141 (509)
T COG0532 138 --------------------------------------------------------------------PEEW-------- 141 (509)
T ss_pred --------------------------------------------------------------------Hhhc--------
Confidence 1111
Q ss_pred hcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCcccccc-CCCceEEEEEEEeecCCCceEEEEEEEeeEEe
Q psy5021 247 LKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINL-NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIK 325 (1021)
Q Consensus 247 ~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~-~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~ 325 (1021)
+.-+.++++||++|.|+++||+++.-..--- + +.. ++.+..+.|..+..++++|.++.+-|+.|||+
T Consensus 142 --gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~-e---------lka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~ 209 (509)
T COG0532 142 --GGDVIFVPVSAKTGEGIDELLELILLLAEVL-E---------LKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLK 209 (509)
T ss_pred --CCceEEEEeeccCCCCHHHHHHHHHHHHHHH-h---------hhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEe
Confidence 1225677789999999999999987332110 1 111 67899999999999999999999999999999
Q ss_pred cCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCcc
Q psy5021 326 VGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKES 372 (1021)
Q Consensus 326 ~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~ 372 (1021)
.||.+....... .++.+......++..+.++--+-+.|++++
T Consensus 210 ~GD~iv~g~~~g-----~I~t~v~~~~~~i~~a~ps~~v~i~g~~ev 251 (509)
T COG0532 210 KGDIIVAGGEYG-----RVRTMVDDLGKPIKEAGPSKPVEILGLSEV 251 (509)
T ss_pred cCCEEEEccCCC-----ceEEeehhcCCCccccCCCCCeEEeccccc
Confidence 999999765432 233444455566777777776777776653
No 92
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.97 E-value=3.4e-29 Score=287.07 Aligned_cols=264 Identities=24% Similarity=0.290 Sum_probs=204.4
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-----------
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV----------- 72 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~----------- 72 (1021)
+.+.-.||+++||+|||||||+++|. ..++|+.++|++||+|+..+...+.|..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~---------------~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~ 69 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALT---------------GVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYT 69 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhh---------------CeecccCHhHHhcCcEEEecccccccccccccCcccccc
Confidence 45566899999999999999999993 1358999999999999998876655531
Q ss_pred -c----------cCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHHHHhhcCC-CEEEEEeCc
Q psy5021 73 -N----------KFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQSQKYKV-PKMIFVNKM 139 (1021)
Q Consensus 73 -~----------~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~~~~~~~~-p~iiviNK~ 139 (1021)
. +..+.++|||||||.+|...+..++..+|++++|+|++++. ..++.+++..+...++ |+++|+||+
T Consensus 70 ~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~ 149 (411)
T PRK04000 70 TEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKI 149 (411)
T ss_pred ccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEee
Confidence 0 01368999999999999999999999999999999999998 8999999998888876 578899999
Q ss_pred CCCCCCH-HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhc
Q psy5021 140 DRIGANY-NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLS 218 (1021)
Q Consensus 140 D~~~~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 218 (1021)
|+...+. ....+++.+.+.
T Consensus 150 Dl~~~~~~~~~~~~i~~~l~------------------------------------------------------------ 169 (411)
T PRK04000 150 DLVSKERALENYEQIKEFVK------------------------------------------------------------ 169 (411)
T ss_pred ccccchhHHHHHHHHHHHhc------------------------------------------------------------
Confidence 9864221 111111111110
Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCce
Q psy5021 219 NNDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKF 298 (1021)
Q Consensus 219 ~~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~ 298 (1021)
.. ....+|++++||++|.|++.|++.|.+++|.|... .+.|+
T Consensus 170 -------------------------~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~-----------~~~~~ 211 (411)
T PRK04000 170 -------------------------GT--VAENAPIIPVSALHKVNIDALIEAIEEEIPTPERD-----------LDKPP 211 (411)
T ss_pred -------------------------cc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCCC-----------CCCCc
Confidence 00 01236789999999999999999999999877542 46899
Q ss_pred EEEEEEEeec--------CCCceEEEEEEEeeEEecCCEEEeCCCce------------eeEeceEEEeecCCeeccccc
Q psy5021 299 VSLVFKIFHD--------PFLGSLSFIRIYSGFIKVGDLVYNSTKKV------------KEKIFRILRMFANSKKDINDA 358 (1021)
Q Consensus 299 ~~~V~k~~~~--------~~~g~~~~~RV~sG~l~~gd~v~~~~~~~------------~~~i~~i~~~~g~~~~~v~~a 358 (1021)
+++|..+|.. +++|.+..|||.+|++++||.|...+.+. ..+|+.|... ..++++|
T Consensus 212 r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~----~~~~~~a 287 (411)
T PRK04000 212 RMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAG----GEKVEEA 287 (411)
T ss_pred eEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEEC----CEECCEE
Confidence 9999988743 34678999999999999999999876542 3577777532 4678999
Q ss_pred cCCCEEEEe-----cC--CccccCCeeccCCcc
Q psy5021 359 HFGDIVVIV-----GL--KESSTGDTLCSLSEN 384 (1021)
Q Consensus 359 ~aGdIv~i~-----gl--~~~~~gdtl~~~~~~ 384 (1021)
.|||.+++. ++ +++..|+.||+...+
T Consensus 288 ~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~ 320 (411)
T PRK04000 288 RPGGLVGVGTKLDPSLTKADALAGSVAGKPGTL 320 (411)
T ss_pred cCCCEEEEEeccCCCCCHHHccCccEEEcCCCC
Confidence 999999984 33 237789999987543
No 93
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.97 E-value=1.7e-28 Score=287.84 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=111.7
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh---------
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA--------- 725 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~--------- 725 (1021)
+++|.+|+|||||+|+|++.... ..+...|+|.+.....++.++..+.||||||..
T Consensus 215 ~iiG~~nvGKSSLin~l~~~~~~---------------~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~ 279 (472)
T PRK03003 215 ALVGKPNVGKSSLLNKLAGEERS---------------VVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGH 279 (472)
T ss_pred EEECCCCCCHHHHHHHHhCCCcc---------------cccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchH
Confidence 45677999999999999985321 122345778888777788888999999999953
Q ss_pred -hhHHH-HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 726 -DYIKN-MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 726 -~~~~~-~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
.|... +..+++.||++++|+|++++...+....+..+...++| +|+|+||+|+.+.+ .......++...+....
T Consensus 280 e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~p-iIiV~NK~Dl~~~~-~~~~~~~~i~~~l~~~~-- 355 (472)
T PRK03003 280 EYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRA-LVLAFNKWDLVDED-RRYYLEREIDRELAQVP-- 355 (472)
T ss_pred HHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCChh-HHHHHHHHHHHhcccCC--
Confidence 23222 23456899999999999999988888888888888998 99999999997622 22333344444443333
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..+++++||++|. |++++++.+.+
T Consensus 356 --~~~~~~~SAk~g~-----------gv~~lf~~i~~ 379 (472)
T PRK03003 356 --WAPRVNISAKTGR-----------AVDKLVPALET 379 (472)
T ss_pred --CCCEEEEECCCCC-----------CHHHHHHHHHH
Confidence 2578999999884 56666666554
No 94
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.97 E-value=4e-29 Score=297.66 Aligned_cols=251 Identities=20% Similarity=0.245 Sum_probs=202.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++||+|||||||+++|.. ..+|..++|++||+|++.....+... .+..++|||||||.+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg---------------~~~dr~~eE~~rGiTI~l~~~~~~~~---~g~~i~~IDtPGhe~ 63 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITG---------------VNADRLPEEKKRGMTIDLGYAYWPQP---DGRVLGFIDVPGHEK 63 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhC---------------CCCccchhcccCCceEEeeeEEEecC---CCcEEEEEECCCHHH
Confidence 489999999999999999941 23577889999999998876665543 156799999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCE-EEEEeCcCCCCCC-HHHHHHHHHHHhCCceeeeeee
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPK-MIFVNKMDRIGAN-YNNCIIDIKKKFNCIVLPINFN 167 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~-iiviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~~p 167 (1021)
|...+..++..+|++++|||+.+|+.+||++++..+...++|. ++|+||+|+...+ +....+++++.+.
T Consensus 64 fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~--------- 134 (614)
T PRK10512 64 FLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLR--------- 134 (614)
T ss_pred HHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHH---------
Confidence 9999999999999999999999999999999999999999986 6899999986321 1222222222110
Q ss_pred cccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy5021 168 IGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLVL 247 (1021)
Q Consensus 168 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~~~ 247 (1021)
..
T Consensus 135 ----------------------------------------------------------------------------~~-- 136 (614)
T PRK10512 135 ----------------------------------------------------------------------------EY-- 136 (614)
T ss_pred ----------------------------------------------------------------------------hc--
Confidence 00
Q ss_pred cCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecC
Q psy5021 248 KNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVG 327 (1021)
Q Consensus 248 ~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~g 327 (1021)
.....|++++||++|.|++.|++.|.++.+ |... .++|++++|..+|..++.|.++.|+|.+|+++.|
T Consensus 137 ~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~-~~~~-----------~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~G 204 (614)
T PRK10512 137 GFAEAKLFVTAATEGRGIDALREHLLQLPE-REHA-----------AQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVG 204 (614)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhc-cccC-----------cCCCceEEEEEEeccCCCeEEEEEEEecceEecC
Confidence 011367899999999999999999987644 4322 4689999999999999999999999999999999
Q ss_pred CEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE--ec-CC--ccccCCeeccC
Q psy5021 328 DLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VG-LK--ESSTGDTLCSL 381 (1021)
Q Consensus 328 d~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~g-l~--~~~~gdtl~~~ 381 (1021)
|.|...+.+...+|.+|... ..++++|.|||.+++ .| ++ ++..||+|+..
T Consensus 205 d~v~i~p~~~~~~VrsIq~~----~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~ 259 (614)
T PRK10512 205 DTLWLTGVNKPMRVRGLHAQ----NQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLAD 259 (614)
T ss_pred CEEEEcCCCCcEEEEEEecC----CcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCC
Confidence 99999888878888887532 367999999999998 44 43 48999999976
No 95
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.97 E-value=3.6e-28 Score=284.61 Aligned_cols=144 Identities=26% Similarity=0.321 Sum_probs=113.0
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh-------
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD------- 726 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~------- 726 (1021)
++++|++|+|||||+|+|++.... ......|+|.+.....+...+..+.+|||||+.+
T Consensus 176 v~ivG~~n~GKStlin~ll~~~~~---------------~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~ 240 (435)
T PRK00093 176 IAIIGRPNVGKSSLINALLGEERV---------------IVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEG 240 (435)
T ss_pred EEEECCCCCCHHHHHHHHhCCCce---------------eecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhH
Confidence 457788999999999999975422 1233458899888888888889999999999643
Q ss_pred ---h-HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 727 ---Y-IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 727 ---~-~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
| ...+..++..+|++|+|+|++++...|+...+.++...+.| +|+++||+|+.+ ++..+.+.+++...+....
T Consensus 241 ~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~-~ivv~NK~Dl~~-~~~~~~~~~~~~~~l~~~~- 317 (435)
T PRK00093 241 VEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRA-LVIVVNKWDLVD-EKTMEEFKKELRRRLPFLD- 317 (435)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCc-EEEEEECccCCC-HHHHHHHHHHHHHhccccc-
Confidence 2 23456678899999999999999999999999999888998 899999999985 3334555666666555443
Q ss_pred CCCceEEEEecccccc
Q psy5021 803 DGENTKIVIGSALLAL 818 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~ 818 (1021)
.++++++||++|.
T Consensus 318 ---~~~i~~~SA~~~~ 330 (435)
T PRK00093 318 ---YAPIVFISALTGQ 330 (435)
T ss_pred ---CCCEEEEeCCCCC
Confidence 3689999999874
No 96
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.96 E-value=1.1e-28 Score=299.31 Aligned_cols=274 Identities=23% Similarity=0.235 Sum_probs=207.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcc--cccc-----cCC--------cccccChHHHhhhCceeeeeeeEEEe
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHK--IGEV-----HHG--------TTITDWMQQEQERGITITSASVSIFW 70 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~--~g~~-----~~~--------~~~~d~~~~e~~rgiTi~~~~~~~~~ 70 (1021)
...-||+|+||+|||||||+++|++..+.+.. .+.+ ..| .+.+|+.++|++||+|++.....+.|
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 34457999999999999999999999998863 1111 122 35799999999999999999999998
Q ss_pred ecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCC-CEEEEEeCcCCCCCCHHHH
Q psy5021 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV-PKMIFVNKMDRIGANYNNC 149 (1021)
Q Consensus 71 ~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~-p~iiviNK~D~~~~~~~~~ 149 (1021)
+ +.+++|||||||.+|...+..++..+|++++|||+.+|+..||++++..+...++ |+++++||+|+...+.+ .
T Consensus 102 ~----~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~-~ 176 (632)
T PRK05506 102 P----KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQE-V 176 (632)
T ss_pred C----CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhH-H
Confidence 8 8899999999999999999999999999999999999999999999999988886 46778999998642211 1
Q ss_pred HHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy5021 150 IIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYI 229 (1021)
Q Consensus 150 ~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l 229 (1021)
++++.+.+
T Consensus 177 ~~~i~~~i------------------------------------------------------------------------ 184 (632)
T PRK05506 177 FDEIVADY------------------------------------------------------------------------ 184 (632)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 11111110
Q ss_pred cCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHH------------HHHHHHHHhCCCCccccccCCccccccCCCc
Q psy5021 230 NNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIE------------FLLNSICEYLPSPYDVDFKNNDYNINLNSNK 297 (1021)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p 297 (1021)
..-+. .+ .-...|++++||++|.|+. .|++.|.. +|.|... .++|
T Consensus 185 ---------~~~~~-~~-~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~-~~~~~~~-----------~~~p 241 (632)
T PRK05506 185 ---------RAFAA-KL-GLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLET-VEIASDR-----------NLKD 241 (632)
T ss_pred ---------HHHHH-Hc-CCCCccEEEEecccCCCccccccCCCcccHhHHHHHHhc-CCCCCCc-----------CCCC
Confidence 00000 00 0012467788999999986 47777754 4544332 4688
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEec--CCccccC
Q psy5021 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVG--LKESSTG 375 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~g--l~~~~~g 375 (1021)
+.+.|..++...+...-..|+|.+|+++.||.|...+.+...+|+.|... ..++++|.|||.+++.- -.++..|
T Consensus 242 ~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v~i~l~~~~~i~rG 317 (632)
T PRK05506 242 FRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTP----DGDLDEAFAGQAVTLTLADEIDISRG 317 (632)
T ss_pred ceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEEC----CceeCEEcCCCeEEEEecCccccCCc
Confidence 99888877654322222569999999999999999888888999999643 34589999999999953 2347899
Q ss_pred CeeccCCc
Q psy5021 376 DTLCSLSE 383 (1021)
Q Consensus 376 dtl~~~~~ 383 (1021)
++||+++.
T Consensus 318 ~vL~~~~~ 325 (632)
T PRK05506 318 DMLARADN 325 (632)
T ss_pred cEEecCCC
Confidence 99999754
No 97
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.96 E-value=4.2e-29 Score=260.84 Aligned_cols=133 Identities=44% Similarity=0.646 Sum_probs=122.0
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc------cCceeEEEE
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN------KFKYMINII 82 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~------~~~~~i~li 82 (1021)
|||||+||+|||||||+++|++.+|.+.... ....+++|+.++|++||+|++++.+++.|... +.++.++||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~--~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~ii 78 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL--AGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLI 78 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc--CCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEE
Confidence 8999999999999999999999998776532 33467899999999999999999999999743 457899999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|||||.+|..++..+++.+|++|+|+|+.+|+..+++.+|+++...++|+++|+||+|+..
T Consensus 79 DTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~ 139 (222)
T cd01885 79 DSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLI 139 (222)
T ss_pred CCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcch
Confidence 9999999999999999999999999999999999999999999999999999999999973
No 98
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.96 E-value=3.4e-28 Score=279.35 Aligned_cols=259 Identities=24% Similarity=0.294 Sum_probs=200.6
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec--------------
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-------------- 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-------------- 72 (1021)
.-.||+++||+|||||||+++|. ...+|+.++|++||+|+.....++.|..
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt---------------~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALT---------------GVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEP 67 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHh---------------CeecccCHhHHHcCceeEecccccccccccccCccccccccc
Confidence 35689999999999999999993 1247889999999999998876665331
Q ss_pred --cc------CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHHHHhhcCCC-EEEEEeCcCCC
Q psy5021 73 --NK------FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQSQKYKVP-KMIFVNKMDRI 142 (1021)
Q Consensus 73 --~~------~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~~~~~~~~p-~iiviNK~D~~ 142 (1021)
++ ..+.+++||||||.+|...+.+++..+|++++|||+++|. ..|+.+++..+...+++ +++++||+|+.
T Consensus 68 ~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 68 VCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLV 147 (406)
T ss_pred cccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccC
Confidence 01 1468999999999999999999999999999999999998 89999999988888765 78889999986
Q ss_pred CCCH-HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCC
Q psy5021 143 GANY-NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNND 221 (1021)
Q Consensus 143 ~~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d 221 (1021)
..+. .+..+++.+.+
T Consensus 148 ~~~~~~~~~~~i~~~l---------------------------------------------------------------- 163 (406)
T TIGR03680 148 SKEKALENYEEIKEFV---------------------------------------------------------------- 163 (406)
T ss_pred CHHHHHHHHHHHHhhh----------------------------------------------------------------
Confidence 4321 11111111111
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEE
Q psy5021 222 EFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSL 301 (1021)
Q Consensus 222 ~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~ 301 (1021)
... ....+|++++||++|.|++.|+++|..++|.|... .+.|+.++
T Consensus 164 ---------------------~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~~-----------~~~~~~~~ 209 (406)
T TIGR03680 164 ---------------------KGT--VAENAPIIPVSALHNANIDALLEAIEKFIPTPERD-----------LDKPPLMY 209 (406)
T ss_pred ---------------------hhc--ccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCCC-----------CCCCcEEE
Confidence 000 01236889999999999999999999999877442 46899999
Q ss_pred EEEEeecC--------CCceEEEEEEEeeEEecCCEEEeCCCce------------eeEeceEEEeecCCeeccccccCC
Q psy5021 302 VFKIFHDP--------FLGSLSFIRIYSGFIKVGDLVYNSTKKV------------KEKIFRILRMFANSKKDINDAHFG 361 (1021)
Q Consensus 302 V~k~~~~~--------~~g~~~~~RV~sG~l~~gd~v~~~~~~~------------~~~i~~i~~~~g~~~~~v~~a~aG 361 (1021)
|..++... ++|.+..|||.+|+|+.||.|...+.+. ..+|..|... ..++++|.||
T Consensus 210 I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~----~~~~~~a~~G 285 (406)
T TIGR03680 210 VARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAG----GYKVEEARPG 285 (406)
T ss_pred EEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEEC----CEECCEEcCC
Confidence 99888543 3678999999999999999999876531 3467777532 4789999999
Q ss_pred CEEEEe-----cCC--ccccCCeeccCC
Q psy5021 362 DIVVIV-----GLK--ESSTGDTLCSLS 382 (1021)
Q Consensus 362 dIv~i~-----gl~--~~~~gdtl~~~~ 382 (1021)
|.+++. +++ ++..|+.|+.++
T Consensus 286 ~~v~i~l~~~~~i~~~dv~~G~vl~~~~ 313 (406)
T TIGR03680 286 GLVGVGTKLDPALTKADALAGQVVGKPG 313 (406)
T ss_pred CEEEEeeccCCCCCHHHcccccEEEcCC
Confidence 999983 332 367899999865
No 99
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.96 E-value=1.2e-28 Score=253.36 Aligned_cols=191 Identities=74% Similarity=1.083 Sum_probs=165.2
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
++.|++||++||||||+++|++.....+......++.+|+.++|+++|+|++.....+++++..++|+|||||.+|.+.+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~ 82 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNM 82 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHH
Confidence 57899999999999999999976433332222334568999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEE
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVI 811 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~ 811 (1021)
..++..+|++++|||+.+|...|+++++.++...++|++|+++||||+...++.++.+++++.++++.++++.++++++|
T Consensus 83 ~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iip 162 (195)
T cd01884 83 ITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVR 162 (195)
T ss_pred HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEE
Confidence 99999999999999999999999999999999999988889999999976556677788899999999999877899999
Q ss_pred ecccccccCCCCCccCcc-hHHHHHHhhhccCCC
Q psy5021 812 GSALLALEGKDDNQLGTT-SIKKLLDVLDSSIPT 844 (1021)
Q Consensus 812 iSa~~~~~~~~~~~~~~~-~i~~Ll~~l~~~l~~ 844 (1021)
+||++|.|..+ ...|+ ++++|+++|++..|.
T Consensus 163 iSa~~g~n~~~--~~~w~~~~~~l~~~l~~~~~~ 194 (195)
T cd01884 163 GSALKALEGDD--PNKWVKKILELLDALDSYIPT 194 (195)
T ss_pred eeCccccCCCC--CCcchhcHhHHHHHHHhCCCC
Confidence 99999876543 24566 489999999986653
No 100
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.96 E-value=5.1e-27 Score=287.77 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=111.8
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh---------
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA--------- 725 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~--------- 725 (1021)
+++|.+|+|||||+|+|++..... .....|+|.+.....+++++..+.||||||+.
T Consensus 454 ~ivG~~nvGKSSLin~l~~~~~~~---------------v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~ 518 (712)
T PRK09518 454 ALVGRPNVGKSSLLNQLTHEERAV---------------VNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGA 518 (712)
T ss_pred EEECCCCCCHHHHHHHHhCccccc---------------cCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhH
Confidence 467789999999999999854221 12245778887777788888899999999963
Q ss_pred hhHHH--HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 726 DYIKN--MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 726 ~~~~~--~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
.|... ...++..+|++++|+|++++...++...+..+...++| +|+|+||+|+.+.. ..+.+..++...+....
T Consensus 519 e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~p-iIiV~NK~DL~~~~-~~~~~~~~~~~~l~~~~-- 594 (712)
T PRK09518 519 EYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRA-LVLVFNKWDLMDEF-RRQRLERLWKTEFDRVT-- 594 (712)
T ss_pred HHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEEchhcCChh-HHHHHHHHHHHhccCCC--
Confidence 22222 23456889999999999999999998888888888999 99999999997632 22333444443333322
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
..+++++||++|. |+++|++.+.+.
T Consensus 595 --~~~ii~iSAktg~-----------gv~~L~~~i~~~ 619 (712)
T PRK09518 595 --WARRVNLSAKTGW-----------HTNRLAPAMQEA 619 (712)
T ss_pred --CCCEEEEECCCCC-----------CHHHHHHHHHHH
Confidence 3578999999884 666666665543
No 101
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.96 E-value=1.1e-27 Score=284.96 Aligned_cols=252 Identities=21% Similarity=0.242 Sum_probs=202.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
||+++||+|||||||+++|... .+|..++|.++|+|++.....+.+. ++.++|||||||.+
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~---------------~~d~~~eE~~rGiTid~~~~~~~~~----~~~v~~iDtPGhe~ 62 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGI---------------AADRLPEEKKRGMTIDLGFAYFPLP----DYRLGFIDVPGHEK 62 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCc---------------cCcCChhHhcCCceEEeEEEEEEeC----CEEEEEEECCCHHH
Confidence 7999999999999999999521 1466788999999999988888877 68999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCCH-HHHHHHHHHHhCCceeeeeee
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGANY-NNCIIDIKKKFNCIVLPINFN 167 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~~-~~~~~~i~~~l~~~~~~~~~p 167 (1021)
|...+..++..+|++++|||+++|+.+|+.+++..+...++| +++|+||+|+...+. +...+++++.+
T Consensus 63 f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l---------- 132 (581)
T TIGR00475 63 FISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQIL---------- 132 (581)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHH----------
Confidence 999999999999999999999999999999999999989999 999999999864221 11111111111
Q ss_pred cccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHHHh
Q psy5021 168 IGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLVL 247 (1021)
Q Consensus 168 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~~~ 247 (1021)
.. +.
T Consensus 133 ---------------------------------------------------------------------------~~-~~ 136 (581)
T TIGR00475 133 ---------------------------------------------------------------------------NS-YI 136 (581)
T ss_pred ---------------------------------------------------------------------------HH-hC
Confidence 00 00
Q ss_pred cCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecC
Q psy5021 248 KNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVG 327 (1021)
Q Consensus 248 ~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~g 327 (1021)
.....|++++||++|.|++++++.+..+++...... .++|+.+.|..++..++.|.++.|+|.+|+++.|
T Consensus 137 ~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~~----------~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~G 206 (581)
T TIGR00475 137 FLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIKR----------IQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVG 206 (581)
T ss_pred CCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCcC----------cCCCcEEEEEEEEecCCcEEEEEEEEecceEecC
Confidence 011357889999999999999999887765432210 3689999999999999999999999999999999
Q ss_pred CEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccCCeecc
Q psy5021 328 DLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTGDTLCS 380 (1021)
Q Consensus 328 d~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~gdtl~~ 380 (1021)
|.|...+.+...+|.+|... ..++++|.||+.+++ .|++ ++..|..++.
T Consensus 207 d~l~i~P~~~~~~Vr~iq~~----~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~ 259 (581)
T TIGR00475 207 DNLRLLPINHEVRVKAIQAQ----NQDVEIAYAGQRIALNLMDVEPESLKRGLLILT 259 (581)
T ss_pred CEEEECCCCceEEEeEEEEC----CccCCEEECCCEEEEEeCCCCHHHcCCceEEcC
Confidence 99999998888999998642 456999999999999 3443 3678855544
No 102
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.96 E-value=1.9e-27 Score=280.90 Aligned_cols=246 Identities=29% Similarity=0.365 Sum_probs=196.3
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe-EEEEEecCChhhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK-HYAHVDCPGHADY 727 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~-~i~liDtpG~~~~ 727 (1021)
.|...++++||+|||||||+++|.+... .....+|+|.+.....+.+++. .++|||||||++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v----------------~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F 148 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKV----------------AQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAF 148 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCc----------------ccccCCceeecceEEEEEECCCcEEEEEECCCCcch
Confidence 4778999999999999999999987321 1122357888888877777555 8999999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC----
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD---- 803 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~---- 803 (1021)
..++.+++..+|++++|+|+++|...||.+++..+...++| +|+++||+|+.+.. .+.+.+++.+ .++.
T Consensus 149 ~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~--~e~v~~~L~~----~g~~~~~~ 221 (587)
T TIGR00487 149 TSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP-IIVAINKIDKPEAN--PDRVKQELSE----YGLVPEDW 221 (587)
T ss_pred hhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcccccCC--HHHHHHHHHH----hhhhHHhc
Confidence 99999999999999999999999999999999999999999 99999999986421 2222233322 2221
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc--CCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS--IPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKN 881 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~--l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~ 881 (1021)
....+++++||++|. |+++|+++|... +.......+.|++++|.+++..+|.|++++|+|.+|+|++
T Consensus 222 ~~~~~~v~iSAktGe-----------GI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~ 290 (587)
T TIGR00487 222 GGDTIFVPVSALTGD-----------GIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRV 290 (587)
T ss_pred CCCceEEEEECCCCC-----------ChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeC
Confidence 123679999999883 888888888532 2223334568999999999999999999999999999999
Q ss_pred CCEEEEeecCCeeEEEEEEEEe-cccccceeccCceEEEEecccCccCc-ccceEEe
Q psy5021 882 GEEIEIVGYKQTIKTTITGIEM-FKKTLDEGLAGENVGILLRSVKREEV-ERGQVLA 936 (1021)
Q Consensus 882 gd~v~i~p~~~~~~~~Vksi~~-~~~~~~~a~~G~~v~l~l~~~~~~~i-~~G~vl~ 936 (1021)
||.+.++|. ..+|++|+. ++..+++|.||+.|.+. ++ .++ ..||.+.
T Consensus 291 Gd~iv~~~~----~~kVr~l~~~~g~~v~~a~~g~~v~i~--Gl--~~~p~aGd~~~ 339 (587)
T TIGR00487 291 GDIVVVGAA----YGRVRAMIDENGKSVKEAGPSKPVEIL--GL--SDVPAAGDEFI 339 (587)
T ss_pred CCEEEECCC----ccEEEEEECCCCCCCCEECCCCEEEEe--CC--CCCCCCCCEEE
Confidence 999999873 268999998 56799999999999876 32 233 6788886
No 103
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.96 E-value=1.9e-27 Score=286.30 Aligned_cols=249 Identities=29% Similarity=0.342 Sum_probs=200.5
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY 727 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~ 727 (1021)
..|...++++||+|||||||+++|.+... .....+|+|.+.....+.+++..++|||||||++|
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v----------------~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F 350 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNV----------------AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAF 350 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCc----------------cccccCceeeeccEEEEEECCEEEEEEECCCCccc
Confidence 45889999999999999999999986321 11224688998888888888899999999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHh---hhccccCC
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIREL---LTEYDFDG 804 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~---l~~~~~~~ 804 (1021)
..++..++..+|++|||||+++|...||.++|..+...++| +||++||||+.+.. .+.+..++.+. ...+ .
T Consensus 351 ~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~--~e~V~~eL~~~~~~~e~~---g 424 (787)
T PRK05306 351 TAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDKPGAN--PDRVKQELSEYGLVPEEW---G 424 (787)
T ss_pred hhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECccccccC--HHHHHHHHHHhcccHHHh---C
Confidence 99999999999999999999999999999999999999999 99999999996521 22233333221 1111 1
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC--CCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI--PTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNG 882 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l--~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~g 882 (1021)
..++++++||++|. |+++|+++|.... .......+.|++..|.+++..+|.|+|++|+|.+|+|++|
T Consensus 425 ~~vp~vpvSAktG~-----------GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~G 493 (787)
T PRK05306 425 GDTIFVPVSAKTGE-----------GIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVG 493 (787)
T ss_pred CCceEEEEeCCCCC-----------CchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecC
Confidence 24789999999884 7888888876321 1223445789999999999999999999999999999999
Q ss_pred CEEEEeecCCeeEEEEEEEEec-ccccceeccCceEEEEecccCccCc-ccceEEee
Q psy5021 883 EEIEIVGYKQTIKTTITGIEMF-KKTLDEGLAGENVGILLRSVKREEV-ERGQVLAK 937 (1021)
Q Consensus 883 d~v~i~p~~~~~~~~Vksi~~~-~~~~~~a~~G~~v~l~l~~~~~~~i-~~G~vl~~ 937 (1021)
|.|.+.| ...+|++|+.+ +..++.|.||+.|.+. + ..++ ..||+|+.
T Consensus 494 d~vv~g~----~~gkVr~m~~~~~~~v~~A~pGd~V~I~--g--l~~~p~~Gd~l~~ 542 (787)
T PRK05306 494 DIVVAGT----TYGRVRAMVDDNGKRVKEAGPSTPVEIL--G--LSGVPQAGDEFVV 542 (787)
T ss_pred CEEEECC----cEEEEEEEECCCCCCCCEEcCCCeEEEe--C--CCCCCCCCCEEEE
Confidence 9999874 24799999985 6699999999999876 2 2344 68999984
No 104
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.1e-26 Score=251.64 Aligned_cols=250 Identities=28% Similarity=0.361 Sum_probs=207.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+..||++||||||+.++. +..+|..++|++||+|++....++... ++.+.|||.|||.+
T Consensus 2 ii~t~GhidHgkT~L~~alt---------------g~~~d~l~EekKRG~TiDlg~~y~~~~----d~~~~fIDvpgh~~ 62 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT---------------GGVTDRLPEEKKRGITIDLGFYYRKLE----DGVMGFIDVPGHPD 62 (447)
T ss_pred eEEEeeeeeccchhhhhhhc---------------ccccccchhhhhcCceEeeeeEeccCC----CCceEEeeCCCcHH
Confidence 58999999999999999983 245688999999999999988877777 78999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCE-EEEEeCcCCCCCCHHHHHHHHHHHhCCceeeeeeec
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPK-MIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNI 168 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~p~ 168 (1021)
|...+..++...|+|+||||+.+|+.+||.+++..+...+++. ++|+||+|+.+.. +.-+.+++.++
T Consensus 63 ~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~--r~e~~i~~Il~---------- 130 (447)
T COG3276 63 FISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEA--RIEQKIKQILA---------- 130 (447)
T ss_pred HHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHH--HHHHHHHHHHh----------
Confidence 9999999999999999999999999999999999999999998 8889999986321 11111111111
Q ss_pred ccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q psy5021 169 GIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLVLK 248 (1021)
Q Consensus 169 ~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~~~~ 248 (1021)
.++
T Consensus 131 -----------------------------------------------~l~------------------------------ 133 (447)
T COG3276 131 -----------------------------------------------DLS------------------------------ 133 (447)
T ss_pred -----------------------------------------------hcc------------------------------
Confidence 000
Q ss_pred CceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCC
Q psy5021 249 NKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGD 328 (1021)
Q Consensus 249 ~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd 328 (1021)
-...|+|..||.+|.||++|-+.|.+..- +.++. .+.||+.+|...|..++.|++..|-++||+++.||
T Consensus 134 l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~-~~e~d----------~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D 202 (447)
T COG3276 134 LANAKIFKTSAKTGRGIEELKNELIDLLE-EIERD----------EQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGD 202 (447)
T ss_pred cccccccccccccCCCHHHHHHHHHHhhh-hhhhc----------cCCceEEEEeeEEEeccccEEEEeEEeeeeEEECC
Confidence 01246788899999999999999987764 22211 57899999999999999999999999999999999
Q ss_pred EEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe--cC--CccccCCeeccCC
Q psy5021 329 LVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV--GL--KESSTGDTLCSLS 382 (1021)
Q Consensus 329 ~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~~gdtl~~~~ 382 (1021)
.++.++.++..+|.+|... -.++++|.||+-|++. |. +++..|+.|..+.
T Consensus 203 ~L~l~p~~k~v~VRsIq~~----d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~ 256 (447)
T COG3276 203 KLYLSPINKEVRVRSIQAH----DVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE 256 (447)
T ss_pred EEEEecCCCeEEEEeeeec----CcchhhccccceeeeecCCCCHHHhhcccEeccCC
Confidence 9999999999999988432 3568999999999983 44 2377899888754
No 105
>KOG1145|consensus
Probab=99.95 E-value=1.7e-26 Score=252.63 Aligned_cols=252 Identities=23% Similarity=0.296 Sum_probs=201.5
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+.+-|.|+||+|||||||+++|....-+... ..|||..-.+..+.+.. +..++|+|||
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E------------------~GGITQhIGAF~V~~p~---G~~iTFLDTP 209 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGE------------------AGGITQHIGAFTVTLPS---GKSITFLDTP 209 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhh------------------cCCccceeceEEEecCC---CCEEEEecCC
Confidence 35678999999999999999999543332222 34788887777776662 5899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeee
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN 165 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 165 (1021)
||..|..+..|+...+|.++|||.|.+|+.+||.+.+..++..++|+|+++||+|+++++++++..++-.. |.
T Consensus 210 GHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~-gi------ 282 (683)
T KOG1145|consen 210 GHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ-GI------ 282 (683)
T ss_pred cHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc-Cc------
Confidence 99999999999999999999999999999999999999999999999999999999999998887776432 10
Q ss_pred eecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHH
Q psy5021 166 FNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKL 245 (1021)
Q Consensus 166 ~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~ 245 (1021)
..++
T Consensus 283 --------------------------------------------------------------------~~E~-------- 286 (683)
T KOG1145|consen 283 --------------------------------------------------------------------VVED-------- 286 (683)
T ss_pred --------------------------------------------------------------------cHHH--------
Confidence 0111
Q ss_pred HhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCcccccc-CCCceEEEEEEEeecCCCceEEEEEEEeeEE
Q psy5021 246 VLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINL-NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFI 324 (1021)
Q Consensus 246 ~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~-~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l 324 (1021)
-+--++++.+||++|.|++.|.+++.-..-- .+ +.. |.+|+-++|....-|+++|.++.+-|-.|||
T Consensus 287 --~GGdVQvipiSAl~g~nl~~L~eaill~Ae~-md---------LkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTL 354 (683)
T KOG1145|consen 287 --LGGDVQVIPISALTGENLDLLEEAILLLAEV-MD---------LKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTL 354 (683)
T ss_pred --cCCceeEEEeecccCCChHHHHHHHHHHHHH-hh---------cccCCCCCceEEEEEeeecCCccceeEEEEecccc
Confidence 1233668888999999999999998633210 00 001 7899999999999999999999999999999
Q ss_pred ecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCcc-ccCCee
Q psy5021 325 KVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKES-STGDTL 378 (1021)
Q Consensus 325 ~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~gdtl 378 (1021)
++|+.|..... -.|+..++-..| .++++|.+|.-+-+.|.+++ ..||-+
T Consensus 355 kKG~vlV~G~~--w~KVr~l~D~nG---k~i~~A~Ps~pv~V~GwkdlP~aGD~v 404 (683)
T KOG1145|consen 355 KKGSVLVAGKS--WCKVRALFDHNG---KPIDEATPSQPVEVLGWKDLPIAGDEV 404 (683)
T ss_pred ccccEEEEech--hhhhhhhhhcCC---CCccccCCCCceEeecccCCCCCCceE
Confidence 99999986543 346666655554 56999999999999999875 456644
No 106
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.95 E-value=2.5e-26 Score=282.01 Aligned_cols=282 Identities=27% Similarity=0.418 Sum_probs=210.8
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee----CCeEEEEEecCChhh
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES----ENKHYAHVDCPGHAD 726 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~----~~~~i~liDtpG~~~ 726 (1021)
.-++|++||++||||||+++|+.....+........+++|..+.|++||+|++.+...+.+ .+..++|+|||||.+
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 3478999999999999999998765544432222345689999999999999988766554 467899999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc---------hhhHHHHHHHHHHHhh
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ---------DKELLDLVEMEIRELL 797 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~---------~~~~~~~~~~~~~~~l 797 (1021)
|...+..+++.+|++|+|||+..|+..|++.+|..+...++| .|+++||||+.. ..+++..+.+++..++
T Consensus 100 f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~-~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~l 178 (731)
T PRK07560 100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVK-PVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLI 178 (731)
T ss_pred hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCC-eEEEEECchhhcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999889999 688999999762 1223444444454454
Q ss_pred hccc---------cCCCceEEEEecccccccCCCCC--ccC--------------------cc-hHHHHHHhhhccCCCC
Q psy5021 798 TEYD---------FDGENTKIVIGSALLALEGKDDN--QLG--------------------TT-SIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 798 ~~~~---------~~~~~~~ii~iSa~~~~~~~~~~--~~~--------------------~~-~i~~Ll~~l~~~l~~~ 845 (1021)
..+. +...+..+++.||+.++.-.... ... |. -...|++.+.+++|.|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPsP 258 (731)
T PRK07560 179 KGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLPNP 258 (731)
T ss_pred HHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCCCh
Confidence 4332 22222345567887653111000 000 00 0126899999989888
Q ss_pred CC-------------------------CCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEE
Q psy5021 846 NR-------------------------ITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITG 900 (1021)
Q Consensus 846 ~~-------------------------~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vks 900 (1021)
.. ..+.|+.+.|..++..++.|.++.|+|.+|+|++||.|.+.+.+. +.+|..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~--~~~v~~ 336 (731)
T PRK07560 259 IEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKK--KNRVQQ 336 (731)
T ss_pred hhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCC--ceEehe
Confidence 42 124589999999999999999999999999999999999886544 356777
Q ss_pred EEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 901 IEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 901 i~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
|... ..++++|.|||++++. + ..++.+|++|+...
T Consensus 337 i~~~~g~~~~~v~~a~AGdIv~i~--g--l~~~~~GdtL~~~~ 375 (731)
T PRK07560 337 VGIYMGPEREEVEEIPAGNIAAVT--G--LKDARAGETVVSVE 375 (731)
T ss_pred ehhhhcCCCceeeeECCCCEEEEE--c--ccccccCCEEeCCC
Confidence 7765 4589999999999985 3 34677899998653
No 107
>KOG0458|consensus
Probab=99.94 E-value=3.2e-26 Score=254.37 Aligned_cols=272 Identities=24% Similarity=0.291 Sum_probs=211.9
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcc------------ccccc-CCcccccChHHHhhhCceeeeeeeEEEee
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHK------------IGEVH-HGTTITDWMQQEQERGITITSASVSIFWE 71 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~------------~g~~~-~~~~~~d~~~~e~~rgiTi~~~~~~~~~~ 71 (1021)
....-|..++||+|+|||||..+|||.-|.+.. .|.-. ...+.+|...+|++||+|+......|+-.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 345678999999999999999999999888754 22221 12577899999999999999999888866
Q ss_pred cccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-------CchhHHHHHHHHhhcCCCEEE-EEeCcCCCC
Q psy5021 72 VNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-------IQPQTETVWFQSQKYKVPKMI-FVNKMDRIG 143 (1021)
Q Consensus 72 ~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-------~~~~t~~~~~~~~~~~~p~ii-viNK~D~~~ 143 (1021)
.+.++|+|+|||.||...++.+...+|.++|||||+-| ...||+++...++..|+.-++ ++||||..+
T Consensus 254 ----~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 254 ----SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVS 329 (603)
T ss_pred ----ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccC
Confidence 89999999999999999999999999999999999965 568999999999999987554 599999988
Q ss_pred CCH---HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCC
Q psy5021 144 ANY---NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNN 220 (1021)
Q Consensus 144 ~~~---~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~ 220 (1021)
++- +++...+...|...+
T Consensus 330 Wsq~RF~eIk~~l~~fL~~~~----------------------------------------------------------- 350 (603)
T KOG0458|consen 330 WSQDRFEEIKNKLSSFLKESC----------------------------------------------------------- 350 (603)
T ss_pred ccHHHHHHHHHHHHHHHHHhc-----------------------------------------------------------
Confidence 763 333333333331100
Q ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccH---------------HHHHHHHHHhCCCCcccccc
Q psy5021 221 DEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGI---------------EFLLNSICEYLPSPYDVDFK 285 (1021)
Q Consensus 221 d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi---------------~~Ll~~i~~~lP~p~~~~~~ 285 (1021)
.+... .-+|+|+ |+++|.|+ ..||+.|-. +-.|...
T Consensus 351 -----------gf~es-----------~v~FIPi---SGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~~--- 401 (603)
T KOG0458|consen 351 -----------GFKES-----------SVKFIPI---SGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPERP--- 401 (603)
T ss_pred -----------CcccC-----------CcceEec---ccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCCc---
Confidence 00000 0145555 78877775 246666655 4444332
Q ss_pred CCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEE
Q psy5021 286 NNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVV 365 (1021)
Q Consensus 286 ~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~ 365 (1021)
-+.||++-|..++..+..|....|||.||.++.||+|++.+......|..|-.- -.+...|.|||-|.
T Consensus 402 --------~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~----~~~~~~a~AGD~Vs 469 (603)
T KOG0458|consen 402 --------IDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSN----DEPKTWAVAGDNVS 469 (603)
T ss_pred --------ccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecC----CCcceeEeeCCEEE
Confidence 456999999999999999999999999999999999999998888888887432 56788899999999
Q ss_pred E--ecCC--ccccCCeecc
Q psy5021 366 I--VGLK--ESSTGDTLCS 380 (1021)
Q Consensus 366 i--~gl~--~~~~gdtl~~ 380 (1021)
+ .|+. .+..||+++.
T Consensus 470 l~L~~i~~n~v~~g~i~~~ 488 (603)
T KOG0458|consen 470 LKLPGILPNLVQVGDIADS 488 (603)
T ss_pred EecCccChhhcccceeeec
Confidence 8 4533 3789999985
No 108
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.94 E-value=4.1e-26 Score=268.79 Aligned_cols=230 Identities=27% Similarity=0.358 Sum_probs=171.4
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee----------------
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES---------------- 711 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~---------------- 711 (1021)
.+|+..++++||+|||||||+++|++..... +...|+|.+.....+..
T Consensus 1 ~~r~piV~IiG~~d~GKTSLln~l~~~~v~~----------------~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v 64 (590)
T TIGR00491 1 KLRSPIVSVLGHVDHGKTTLLDKIRGSAVAK----------------REAGGITQHIGATEIPMDVIEGICGDLLKKFKI 64 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcccccc----------------ccCCceecccCeeEeeecccccccccccccccc
Confidence 3678899999999999999999999743111 11123333322222211
Q ss_pred --CCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhh----
Q psy5021 712 --ENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKE---- 784 (1021)
Q Consensus 712 --~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~---- 784 (1021)
....++|||||||++|...+..+++.+|++++|+|+++|...|+.+++.++...++| +|+++||+|+.+ +..
T Consensus 65 ~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vp-iIVv~NK~Dl~~~~~~~~~~ 143 (590)
T TIGR00491 65 RLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTP-FVVAANKIDRIPGWRSHEGR 143 (590)
T ss_pred ccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCC-EEEEEECCCccchhhhccCc
Confidence 112488999999999999999999999999999999999999999999999999999 999999999964 110
Q ss_pred -HH-------HHHHHH-------HHHhhhccccCC----------CceEEEEecccccccCCCCCccCcchHHHHHHhhh
Q psy5021 785 -LL-------DLVEME-------IRELLTEYDFDG----------ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLD 839 (1021)
Q Consensus 785 -~~-------~~~~~~-------~~~~l~~~~~~~----------~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~ 839 (1021)
.+ +.++.. +...+...|+.. ..++++|+||++| +|+++|+++|.
T Consensus 144 ~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tG-----------eGideLl~~l~ 212 (590)
T TIGR00491 144 PFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITG-----------EGIPELLTMLA 212 (590)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCC-----------CChhHHHHHHH
Confidence 00 011111 111233344432 2579999999988 38888888775
Q ss_pred cc----CC-CCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecc
Q psy5021 840 SS----IP-TPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK 905 (1021)
Q Consensus 840 ~~----l~-~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~ 905 (1021)
.. ++ ..+...+.|++++|.+++.++|.|+|++|.|.+|+|++||.+.++|....+.++|++|..++
T Consensus 213 ~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~ 283 (590)
T TIGR00491 213 GLAQQYLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPR 283 (590)
T ss_pred HHHHHHhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCC
Confidence 32 21 12234578999999999999999999999999999999999999997666678999999764
No 109
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.94 E-value=1.5e-26 Score=237.96 Aligned_cols=127 Identities=33% Similarity=0.476 Sum_probs=113.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc-CCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH-HGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~-~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.||+++||+|||||||+++|++... ..|+.. .+.+.+|+.++|++||+|+++....+.|+ +++++|+|||||
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~---~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----~~~i~~iDtPG~ 75 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLA---KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA----NRHYAHVDCPGH 75 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH---hcccccccccccccCChhhhhcCccEEeeeeEecCC----CeEEEEEECcCH
Confidence 5899999999999999999997643 233322 33567999999999999999998888887 889999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~ 142 (1021)
.+|..++.+++..+|++++|||+.+|+..+++++|+.+...++| +|+|+||||+.
T Consensus 76 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 76 ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999998 66889999985
No 110
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.94 E-value=2e-25 Score=264.73 Aligned_cols=301 Identities=22% Similarity=0.249 Sum_probs=190.5
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc--CCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH--HGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~--~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
+...|+|+||+|||||||+++|.........+|... -|.++.++...+..+|.+.......+.+ ..++||||
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~iDT 78 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKI------PGLLFIDT 78 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceecccccccccc------CCEEEEEC
Confidence 456799999999999999999965433333332221 1222222221122222222110001111 13799999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC-CCHHHHHHHHHHHhCCceee
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG-ANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~-~~~~~~~~~i~~~l~~~~~~ 163 (1021)
|||.+|...+.++++.+|++++|+|+++|++.++.+.++.+...++|+++++||+|+.. .....- ..+.+.+..
T Consensus 79 PG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~-~~~~e~~~~---- 153 (586)
T PRK04004 79 PGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTED-APFLESIEK---- 153 (586)
T ss_pred CChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcC-chHHHHHhh----
Confidence 99999999999999999999999999999999999999999999999999999999852 100000 000000000
Q ss_pred eeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSI 242 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~~~~ 242 (1021)
-+... ...+.+.+.+ +..+|.. .+..+.+.. +
T Consensus 154 ----------------------------------~~~~v---~~~f~~~l~e---------v~~~L~~~g~~~e~~~~-~ 186 (586)
T PRK04004 154 ----------------------------------QSQRV---QQELEEKLYE---------LIGQLSELGFSADRFDR-V 186 (586)
T ss_pred ----------------------------------hhHHH---HHHHHHHHHH---------HHHHHHhcCCChhhhhh-h
Confidence 00000 0001111000 1112322 333333222 1
Q ss_pred HHHHhcCceeEEEeccccCcccHHHHHHHHHH----hCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEE
Q psy5021 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICE----YLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIR 318 (1021)
Q Consensus 243 ~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~----~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~R 318 (1021)
++ .+..+|++++||++|.|+++|++.+.. ++|.+..++ ++.|+.+.|++++.+++.|.+++++
T Consensus 187 ~~---~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~----------~~~~~~~~V~ev~~~~g~G~v~~~~ 253 (586)
T PRK04004 187 KD---FTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKID----------VEGPGKGTVLEVKEERGLGTTIDVI 253 (586)
T ss_pred hc---cCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccC----------CCCCeEEEEEEEEEeCCCceEEEEE
Confidence 11 134578899999999999999998864 355554432 5689999999999999999999999
Q ss_pred EEeeEEecCCEEEeCCCce--eeEeceEEEee--------cCCeeccccccCCCEEEE--ecCCccccCCee
Q psy5021 319 IYSGFIKVGDLVYNSTKKV--KEKIFRILRMF--------ANSKKDINDAHFGDIVVI--VGLKESSTGDTL 378 (1021)
Q Consensus 319 V~sG~l~~gd~v~~~~~~~--~~~i~~i~~~~--------g~~~~~v~~a~aGdIv~i--~gl~~~~~gdtl 378 (1021)
|++|+|++||.|...+.+. ..+|..|.... +.....++++.|..-+-+ .|++.+..|+.+
T Consensus 254 v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~g~~~ 325 (586)
T PRK04004 254 LYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALAGSPL 325 (586)
T ss_pred EEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCCCCeE
Confidence 9999999999999877653 35788887652 224456667666555544 477777666654
No 111
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.94 E-value=1.1e-25 Score=266.82 Aligned_cols=246 Identities=29% Similarity=0.317 Sum_probs=181.6
Q ss_pred cccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe----------------
Q psy5021 647 TDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE---------------- 710 (1021)
Q Consensus 647 ~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~---------------- 710 (1021)
..+|+..++++||+|||||||+++|.+.... .+. ..|+|.......+.
T Consensus 2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~--------------~g~itq~ig~~~~~~~~~~~~~~~~~~~~~ 65 (586)
T PRK04004 2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVA--AKE--------------AGGITQHIGATEVPIDVIEKIAGPLKKPLP 65 (586)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCcccc--cCC--------------CCceEEeeceeeccccccccccceeccccc
Confidence 4578899999999999999999999864211 110 11222222111111
Q ss_pred --eCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-h-----
Q psy5021 711 --SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-D----- 782 (1021)
Q Consensus 711 --~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~----- 782 (1021)
..-..++|||||||++|...+..+++.+|++++|+|+++|...|+.+++.++...++| +++++||+|+.. +
T Consensus 66 ~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vp-iIvviNK~D~~~~~~~~~~ 144 (586)
T PRK04004 66 IKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTP-FVVAANKIDRIPGWKSTED 144 (586)
T ss_pred cccccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCchhhhhhcC
Confidence 0011379999999999999999999999999999999999999999999999999999 999999999852 1
Q ss_pred --------------hhHHHHHHHHHHHhhhccccCC----------CceEEEEecccccccCCCCCccCcchHHHHHHhh
Q psy5021 783 --------------KELLDLVEMEIRELLTEYDFDG----------ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVL 838 (1021)
Q Consensus 783 --------------~~~~~~~~~~~~~~l~~~~~~~----------~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l 838 (1021)
...++....++...+...|+.. ..++++|+||++|. |+++|++.+
T Consensus 145 ~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGe-----------Gi~dLl~~i 213 (586)
T PRK04004 145 APFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGE-----------GIPDLLMVL 213 (586)
T ss_pred chHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCC-----------ChHHHHHHH
Confidence 1122233334444555556543 35789999999884 777777766
Q ss_pred hc----cCCC-CCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecc--------
Q psy5021 839 DS----SIPT-PNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK-------- 905 (1021)
Q Consensus 839 ~~----~l~~-~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~-------- 905 (1021)
.. +++. .....+.|++++|.+++..+|.|+|++|+|.+|+|++||.+.++|......++|++|..++
T Consensus 214 ~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~ 293 (586)
T PRK04004 214 AGLAQRYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDP 293 (586)
T ss_pred HHHHHHHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhcccc
Confidence 43 1222 2334578999999999999999999999999999999999999987655668999999863
Q ss_pred ----cccceeccCceEEEE
Q psy5021 906 ----KTLDEGLAGENVGIL 920 (1021)
Q Consensus 906 ----~~~~~a~~G~~v~l~ 920 (1021)
..+++|.|..-|.+.
T Consensus 294 ~~~~~~~~~~~~~~~v~i~ 312 (586)
T PRK04004 294 EDKFKPVDEVVAAAGVKIS 312 (586)
T ss_pred ccccccccccCCCCceEEE
Confidence 355666666555543
No 112
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.94 E-value=2.5e-25 Score=233.28 Aligned_cols=286 Identities=21% Similarity=0.337 Sum_probs=220.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCC----cccccChHHHhhhCceeeeeeeEEEeecc--------
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHG----TTITDWMQQEQERGITITSASVSIFWEVN-------- 73 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~----~~~~d~~~~e~~rgiTi~~~~~~~~~~~~-------- 73 (1021)
..--+|+..||+|||||||+.+|. .|+.++| ..+.|..++|.+||.|-..+..-+-|+.+
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~Lv--------tG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknP 186 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLV--------TGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNP 186 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEE--------ecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCc
Confidence 345689999999999999999994 5566665 46889999999999998777666655542
Q ss_pred -----------cCceeEEEEcCCCCCCcHHHHHHHh--hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcC
Q psy5021 74 -----------KFKYMINIIDTPGHVDFTIEVERSL--RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMD 140 (1021)
Q Consensus 74 -----------~~~~~i~liDtPG~~~f~~~~~~~l--~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D 140 (1021)
..+..+.|+||-||..+...+++++ ...|..+|+|.|.+|++..|++++-.+...++|+|++++|+|
T Consensus 187 ld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D 266 (527)
T COG5258 187 LDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKID 266 (527)
T ss_pred ccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecc
Confidence 1346799999999999999999999 578999999999999999999999999999999999999999
Q ss_pred CCCC-CHHHHHHHHHHHhCC-ceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhc
Q psy5021 141 RIGA-NYNNCIIDIKKKFNC-IVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLS 218 (1021)
Q Consensus 141 ~~~~-~~~~~~~~i~~~l~~-~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 218 (1021)
.... .++.+.+++...|.. +-+|+ ++ .
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~--~v-------------------------------------------------k 295 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKRVGRIPL--IV-------------------------------------------------K 295 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccce--ee-------------------------------------------------e
Confidence 9644 467788888777642 10111 00 0
Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHhcCc-eeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCc
Q psy5021 219 NNDEFFLEKYINNNYSINDIKNSIRKLVLKNK-IIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNK 297 (1021)
Q Consensus 219 ~~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~-~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p 297 (1021)
+.|+ ...+ ..+...++ ++|+|.+|+.+|.|++ +|+.+..+||.-... . ..+|
T Consensus 296 ~~~d---------------~v~a-a~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~rr~~-~---------d~g~ 348 (527)
T COG5258 296 DTDD---------------VVLA-AKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKRRRW-D---------DEGP 348 (527)
T ss_pred ccch---------------hHHh-hhhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCccccc-C---------CCCC
Confidence 0111 1111 11223344 8999999999999995 555566777754211 0 5789
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCc----eeeEeceEEEeecCCeeccccccCCCEEEE--ecCCc
Q psy5021 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKK----VKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLKE 371 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~----~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~~ 371 (1021)
|.+||.|++...++|.++.+-|-||.++.||+|+..+.. .+.+|++|-. .+..+++|.||+|+++ .|.+.
T Consensus 349 flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIem----h~~rvdsa~aG~iig~Al~gv~~ 424 (527)
T COG5258 349 FLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEM----HHYRVDSAKAGSIIGIALKGVEK 424 (527)
T ss_pred eEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEE----eeEEeccccCCcEEEEEecccCH
Confidence 999999999999999999999999999999999965432 4567777743 2567999999999988 46654
Q ss_pred --cccCCeeccC
Q psy5021 372 --SSTGDTLCSL 381 (1021)
Q Consensus 372 --~~~gdtl~~~ 381 (1021)
++.|..|...
T Consensus 425 e~lerGMVl~~~ 436 (527)
T COG5258 425 EELERGMVLSAG 436 (527)
T ss_pred HHHhcceEecCC
Confidence 8889988775
No 113
>PRK00007 elongation factor G; Reviewed
Probab=99.94 E-value=4e-25 Score=269.95 Aligned_cols=275 Identities=23% Similarity=0.298 Sum_probs=205.5
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccc-c-ccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYG-G-EVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~-~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
.+++++||+|+|||||+++|+.....+.. + .....+++|..+.|+++|+|++.....+++.++.++|+|||||.+|..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ 90 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTI 90 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHH
Confidence 47899999999999999999854433221 1 112345789999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEE
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 809 (1021)
.+..+++.+|++|+||||..|+..|+++++.++...++| +|+++||||+.+.. +....+++++.+...- ....
T Consensus 91 ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p-~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~~----~~~~ 163 (693)
T PRK00007 91 EVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVP-RIAFVNKMDRTGAD--FYRVVEQIKDRLGANP----VPIQ 163 (693)
T ss_pred HHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCCCCCC--HHHHHHHHHHHhCCCe----eeEE
Confidence 999999999999999999999999999999999999999 67899999987522 2333344433332210 1123
Q ss_pred EEecccccccC-----------C-----CC--------------------------------------------------
Q psy5021 810 VIGSALLALEG-----------K-----DD-------------------------------------------------- 823 (1021)
Q Consensus 810 i~iSa~~~~~~-----------~-----~~-------------------------------------------------- 823 (1021)
+|+|+..+..+ + +.
T Consensus 164 ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~ 243 (693)
T PRK00007 164 LPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKA 243 (693)
T ss_pred ecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHH
Confidence 34444332100 0 00
Q ss_pred -----------------CccCcchHHHHHHhhhccCCCCCC--------------------CCCCCeeEEEEEEEeeCCc
Q psy5021 824 -----------------NQLGTTSIKKLLDVLDSSIPTPNR--------------------ITDKPFLMPIEDVFSISGR 866 (1021)
Q Consensus 824 -----------------~~~~~~~i~~Ll~~l~~~l~~~~~--------------------~~~~p~~~~I~~~~~v~g~ 866 (1021)
......|+..||+.+.+++|.|.. ..+.|+...|..+...+..
T Consensus 244 ~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~ 323 (693)
T PRK00007 244 ALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFV 323 (693)
T ss_pred HHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCCC
Confidence 000113678899999999988742 1245899999999998999
Q ss_pred eeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 867 GTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 867 G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
|.+..+||.+|+|++||.|+..-.++ +.+|..|... ..++++|.|||.+++. ++ ++++.||+|++..
T Consensus 324 G~ia~~RV~sGtl~~g~~v~~~~~~~--~eki~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~GdtL~~~~ 394 (693)
T PRK00007 324 GKLTFFRVYSGVLESGSYVLNSTKGK--KERIGRILQMHANKREEIKEVRAGDIAAAV--GL--KDTTTGDTLCDEK 394 (693)
T ss_pred CcEEEEEEeeeEEcCCCEEEeCCCCc--eeEeceeEEeccCCcccccccCCCcEEEEe--CC--ccCCcCCEeeCCC
Confidence 99999999999999999997542222 3456666654 3589999999999884 32 3578999998643
No 114
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.94 E-value=3.1e-25 Score=264.64 Aligned_cols=247 Identities=26% Similarity=0.300 Sum_probs=191.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee----CCeEEEEEecCChh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES----ENKHYAHVDCPGHA 725 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~----~~~~i~liDtpG~~ 725 (1021)
|...++++||++||||||+++|.+... ..+..+|+|.+.....+.+ .+..++|||||||+
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~----------------~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe 306 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQI----------------AQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE 306 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccC----------------ccccCCccccccceEEEEEEecCCceEEEEEECCcHH
Confidence 677899999999999999999987431 1123357777666554443 35789999999999
Q ss_pred hhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHh---hhcccc
Q psy5021 726 DYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIREL---LTEYDF 802 (1021)
Q Consensus 726 ~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~---l~~~~~ 802 (1021)
+|..++..++..+|++|||||+++|...||.+++..+...++| +||++||+|+.+.. .+.+..++..+ ...++
T Consensus 307 ~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iP-iIVViNKiDl~~~~--~e~v~~eL~~~~ll~e~~g- 382 (742)
T CHL00189 307 AFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVP-IIVAINKIDKANAN--TERIKQQLAKYNLIPEKWG- 382 (742)
T ss_pred HHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCce-EEEEEECCCccccC--HHHHHHHHHHhccchHhhC-
Confidence 9999999999999999999999999999999999999999999 99999999987521 23333333221 11111
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC--CCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEee
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP--TPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVK 880 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~--~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~ 880 (1021)
..++++++||++|. |++.|+++|..... ......+.|+...|.+.+..++.|++++|+|.+|+|+
T Consensus 383 --~~vpvv~VSAktG~-----------GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr 449 (742)
T CHL00189 383 --GDTPMIPISASQGT-----------NIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLH 449 (742)
T ss_pred --CCceEEEEECCCCC-----------CHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEe
Confidence 24689999999883 88999998865332 1222345688899999998899999999999999999
Q ss_pred CCCEEEEeecCCeeEEEEEEEEec-ccccceeccCceEEEEecccCccCcccceEEe
Q psy5021 881 NGEEIEIVGYKQTIKTTITGIEMF-KKTLDEGLAGENVGILLRSVKREEVERGQVLA 936 (1021)
Q Consensus 881 ~gd~v~i~p~~~~~~~~Vksi~~~-~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~ 936 (1021)
+||.+.++|. .++|+++... +..+.+|.||+.|.+. +++ .....||.+.
T Consensus 450 ~GD~vv~g~~----~gkVr~m~~~~~~~v~~a~pgdiV~I~--gl~-~~~~~Gd~l~ 499 (742)
T CHL00189 450 IGDIIVIGTS----YAKIRGMINSLGNKINLATPSSVVEIW--GLS-SVPATGEHFQ 499 (742)
T ss_pred cCCEEEECCc----ceEEEEEEcCCCcCccEEcCCCceEec--Ccc-cCCCCCCEEE
Confidence 9999998862 3789999854 5699999999999763 321 3455688875
No 115
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.4e-25 Score=233.94 Aligned_cols=296 Identities=23% Similarity=0.239 Sum_probs=203.9
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcc---------------cccccCCcccccChHHHhhhCceeeeeeeEEEe
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHK---------------IGEVHHGTTITDWMQQEQERGITITSASVSIFW 70 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~---------------~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~ 70 (1021)
....++..+|++|.|||||+.+||+.+..+-. .|+--+-....|-++.|+|.||||+.++..|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 34567899999999999999999998765422 111111134567789999999999999988888
Q ss_pred ecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEE-EeCcCCCCCCHHHH
Q psy5021 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIF-VNKMDRIGANYNNC 149 (1021)
Q Consensus 71 ~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiv-iNK~D~~~~~~~~~ 149 (1021)
. .+++.+.|||||..|...+..+..-||.||++|||..|+..||+++-..+...+++.+++ +||||+.+.+- +.
T Consensus 84 ~----KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e-~~ 158 (431)
T COG2895 84 E----KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSE-EV 158 (431)
T ss_pred c----cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCH-HH
Confidence 8 899999999999999999999999999999999999999999999999999999997665 99999976542 12
Q ss_pred HHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy5021 150 IIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYI 229 (1021)
Q Consensus 150 ~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l 229 (1021)
.++|...+ +
T Consensus 159 F~~I~~dy-----------------------------------------------------------------------~ 167 (431)
T COG2895 159 FEAIVADY-----------------------------------------------------------------------L 167 (431)
T ss_pred HHHHHHHH-----------------------------------------------------------------------H
Confidence 22222111 0
Q ss_pred cCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHH------------HHHHHHHHhCCCCccccccCCccccccCCCc
Q psy5021 230 NNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIE------------FLLNSICEYLPSPYDVDFKNNDYNINLNSNK 297 (1021)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p 297 (1021)
++...+- ....-.++.||+.|.++- .||+.+-..-... . ...+|
T Consensus 168 -----------~fa~~L~-~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i~~-~-----------~~~~~ 223 (431)
T COG2895 168 -----------AFAAQLG-LKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETVEIAD-D-----------RSAKA 223 (431)
T ss_pred -----------HHHHHcC-CCcceEEechhccCCcccccccCCCcccCccHHHHHhhccccc-c-----------ccccc
Confidence 0000000 001123445888887762 2333332111111 0 03455
Q ss_pred eEEEEEEEeecCCCceEE-EEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCC--cccc
Q psy5021 298 FVSLVFKIFHDPFLGSLS-FIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLK--ESST 374 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~g~~~-~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~--~~~~ 374 (1021)
|+..|-.+. .|+..+-. -|+|-||++++||+|...+.++..+|++|..+.|. .++|.||+-+.+.=-+ ++..
T Consensus 224 ~RfPVQ~V~-Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~----~~~A~aG~aVtl~L~deidisR 298 (431)
T COG2895 224 FRFPVQYVN-RPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGE----LAQASAGEAVTLVLADEIDISR 298 (431)
T ss_pred eeeceEEec-CCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCCc----hhhccCCceEEEEEcceeeccc
Confidence 555554443 22222222 26888999999999999999999999999888654 6789999999986323 3788
Q ss_pred CCeeccCCccccccCCcCCCCeEEEEEEeCCCC
Q psy5021 375 GDTLCSLSENIQLENIETPIPVISISIEPIFKN 407 (1021)
Q Consensus 375 gdtl~~~~~~~~~~~~~~~~Pv~~~~iep~~~~ 407 (1021)
||.|+..+.++. ..-.+..-++.+.=+|-.+.
T Consensus 299 Gd~i~~~~~~~~-~~~~f~A~vvWm~~~pl~pG 330 (431)
T COG2895 299 GDLIVAADAPPA-VADAFDADVVWMDEEPLLPG 330 (431)
T ss_pred CcEEEccCCCcc-hhhhcceeEEEecCCCCCCC
Confidence 999998765543 12233344555555555444
No 116
>PRK12739 elongation factor G; Reviewed
Probab=99.94 E-value=4.5e-25 Score=269.73 Aligned_cols=269 Identities=24% Similarity=0.348 Sum_probs=206.2
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccc-c-ccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYG-G-EVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~-~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
..+++++||+|+|||||+++|+.....+.. + .....+++|..+.|+++|+|++.....+++++..++|+|||||.+|.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~ 87 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFT 87 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHH
Confidence 457899999999999999999864433221 1 11234578999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc------
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF------ 802 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~------ 802 (1021)
..+..+++.+|++|+|||+.+|...|+++++.++...++| +|+++||||+...+ ++...+++.+.+....+
T Consensus 88 ~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~~--~~~~~~~i~~~l~~~~~~~~iPi 164 (691)
T PRK12739 88 IEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVP-RIVFVNKMDRIGAD--FFRSVEQIKDRLGANAVPIQLPI 164 (691)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--HHHHHHHHHHHhCCCceeEEecc
Confidence 9999999999999999999999999999999999999999 77899999998522 23333444443322100
Q ss_pred --------------------------------------------------------------------------------
Q psy5021 803 -------------------------------------------------------------------------------- 802 (1021)
Q Consensus 803 -------------------------------------------------------------------------------- 802 (1021)
T Consensus 165 s~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l~ 244 (691)
T PRK12739 165 GAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAIR 244 (691)
T ss_pred cccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHHH
Confidence
Q ss_pred ----CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC-------------------CCCCCeeEEEEE
Q psy5021 803 ----DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR-------------------ITDKPFLMPIED 859 (1021)
Q Consensus 803 ----~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~-------------------~~~~p~~~~I~~ 859 (1021)
...-+|++..||+++ .|+..|++.|.+++|.|.. ..+.|+...|..
T Consensus 245 ~~~~~~~~~Pv~~gSa~~~-----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK 313 (691)
T PRK12739 245 KATINMEFFPVLCGSAFKN-----------KGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFK 313 (691)
T ss_pred HHHHcCCEEEEEeccccCC-----------ccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEE
Confidence 000123333344433 3678899999999987742 135689999999
Q ss_pred EEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEE
Q psy5021 860 VFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVL 935 (1021)
Q Consensus 860 ~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl 935 (1021)
++..++.|.+..+||.+|+|++||.|.....++ +.+|..|... ..+++++.|||.+++. ++ .+++.||+|
T Consensus 314 ~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~--~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~gdtl 387 (691)
T PRK12739 314 IMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGK--KERIGRLLQMHANKREEIKEVYAGDIAAAV--GL--KDTTTGDTL 387 (691)
T ss_pred eeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCCc--eEEecceEEEecCCcccccccCCCCEEEEe--CC--CcccCCCEE
Confidence 999999999999999999999999997543232 3455555543 3589999999999887 33 347899999
Q ss_pred eeCC
Q psy5021 936 AKIG 939 (1021)
Q Consensus 936 ~~~~ 939 (1021)
++..
T Consensus 388 ~~~~ 391 (691)
T PRK12739 388 CDEK 391 (691)
T ss_pred eCCC
Confidence 8653
No 117
>KOG0052|consensus
Probab=99.93 E-value=1.2e-26 Score=248.64 Aligned_cols=309 Identities=29% Similarity=0.460 Sum_probs=247.6
Q ss_pred cceeeeeeeeeccchhhhhhhc------------cccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEE
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALT------------KVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAH 718 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~------------~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~l 718 (1021)
.+..-+.||.++||||...... ++....+.+.+.+.|.+|+...|+++|++++...+.++.....+++
T Consensus 7 ~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k~~i~i 86 (391)
T KOG0052|consen 7 HINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTI 86 (391)
T ss_pred ccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccceeEEEEE
Confidence 3566778899999999876321 2233444566667788999999999999999999999998999999
Q ss_pred EecCChhhhHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeeccccch---hhHHHH
Q psy5021 719 VDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM-------PQTREHILLARQVGVPNIVVFLNKADCVQD---KELLDL 788 (1021)
Q Consensus 719 iDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~---~~~~~~ 788 (1021)
+|.|||.+|.++|+.+..+||+++++|.+..|.+ +|++||+.++..+|+.++++.+||||..+. +.++.+
T Consensus 87 id~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~s~~r~~e 166 (391)
T KOG0052|consen 87 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARYEE 166 (391)
T ss_pred ecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCccccchhh
Confidence 9999999999999999999999999999955543 899999999999999999999999997652 223332
Q ss_pred HHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCcee
Q psy5021 789 VEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGT 868 (1021)
Q Consensus 789 ~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~ 868 (1021)
+.+....+.+..++ +..+. ..++|...|.|
T Consensus 167 i~k~~~~~~~~~g~---------------------------n~~~~----------------------~~~~~~~~g~~- 196 (391)
T KOG0052|consen 167 IKKEVSSYIKKIGY---------------------------NPAAV----------------------LQDVYKIGGIG- 196 (391)
T ss_pred hheeeeeeeecccc---------------------------CChhh----------------------hccceeeccee-
Confidence 22211111111110 11111 44677777777
Q ss_pred EEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCC--Cccceee
Q psy5021 869 VVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG--SIKSYNI 946 (1021)
Q Consensus 869 Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~--~~~~~~~ 946 (1021)
+..|.++.++.+...|... +.++++..+++.....+.+|++|+++.+++...++++|+|+.+.. ++.....
T Consensus 197 -----~~t~iie~~~~v~~~~~~~--~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~~p~~~~~g 269 (391)
T KOG0052|consen 197 -----VETGISEPGMDVTFAPSGV--TTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKNDPPVEAAG 269 (391)
T ss_pred -----eeeeeccCccceecccccc--ccccccEEEEeccCccCCCcceeeeecccCccCcccccceecccccCCcccccc
Confidence 8899999999998887655 678999999999888999999999999999999999999998754 4567888
Q ss_pred EEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeec-------------cCCCcccccCCCeEEEEEEEceeeeccc
Q psy5021 947 FECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICK-------------LPENVEMVLPGDNIKLNVTLLSSIAIEI 1013 (1021)
Q Consensus 947 f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~g~~~~v~~~~~~pi~~~~ 1013 (1021)
|.+++.+++|+. .|..||.|++.||+++++|++. +.+.++.+++++.+.+...+.+|+|++.
T Consensus 270 ~t~qviilnhpg-----qis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~kp~~ve~ 344 (391)
T KOG0052|consen 270 FTAQVIILNHPG-----QISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGKPLCVES 344 (391)
T ss_pred ceeeEEEecCcc-----ccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccCCcccccc
Confidence 999999999983 7999999999999999996541 1346899999999999999999999987
Q ss_pred C------CeEEEeC
Q psy5021 1014 G------LRFAIRE 1021 (1021)
Q Consensus 1014 ~------~rf~lr~ 1021 (1021)
. +||.+|+
T Consensus 345 ~~~~~~l~rfav~d 358 (391)
T KOG0052|consen 345 FSDYVPLGRFAVRD 358 (391)
T ss_pred ccccccccchhhhh
Confidence 6 5777764
No 118
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.5e-24 Score=222.98 Aligned_cols=311 Identities=24% Similarity=0.291 Sum_probs=217.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec--c----------
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV--N---------- 73 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~---------- 73 (1021)
+.--||+.+||+|||||||+.+|. .-++|.+.+|.+|||||+..++...+.. +
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~Als---------------GvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~ 72 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALS---------------GVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTE 72 (415)
T ss_pred CcceEeeeeeecccchhhheehhh---------------ceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccC
Confidence 456799999999999999999993 2578899999999999998776443221 0
Q ss_pred ----------cCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-CchhHHHHHHHHhhcCCCEEE-EEeCcCC
Q psy5021 74 ----------KFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-IQPQTETVWFQSQKYKVPKMI-FVNKMDR 141 (1021)
Q Consensus 74 ----------~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-~~~~t~~~~~~~~~~~~p~ii-viNK~D~ 141 (1021)
.--+.+.|+|+|||.-+...+.++....|+|||||+|++. .++||++++..+.-.++.-++ +=||+|+
T Consensus 73 ~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDl 152 (415)
T COG5257 73 PKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDL 152 (415)
T ss_pred CCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccce
Confidence 1125799999999999999999999999999999999986 799999999999888877554 5799998
Q ss_pred CCCC-HHHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCC
Q psy5021 142 IGAN-YNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNN 220 (1021)
Q Consensus 142 ~~~~-~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~ 220 (1021)
...+ ..+..++|++.+
T Consensus 153 V~~E~AlE~y~qIk~Fv--------------------------------------------------------------- 169 (415)
T COG5257 153 VSRERALENYEQIKEFV--------------------------------------------------------------- 169 (415)
T ss_pred ecHHHHHHHHHHHHHHh---------------------------------------------------------------
Confidence 6322 111222222211
Q ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEE
Q psy5021 221 DEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVS 300 (1021)
Q Consensus 221 d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~ 300 (1021)
++ .+ ..-.|++++||.++.+|+.|+++|.+++|.|... .+.|+++
T Consensus 170 ---------kG-------------t~--Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd-----------~~~~p~m 214 (415)
T COG5257 170 ---------KG-------------TV--AENAPIIPISAQHKANIDALIEAIEKYIPTPERD-----------LDKPPRM 214 (415)
T ss_pred ---------cc-------------cc--cCCCceeeehhhhccCHHHHHHHHHHhCCCCccC-----------CCCCceE
Confidence 11 00 0124788889999999999999999999999865 6789999
Q ss_pred EEEEEeecCC--------CceEEEEEEEeeEEecCCEEEeCCC------cee---eEeceEEEeecCCeeccccccCCCE
Q psy5021 301 LVFKIFHDPF--------LGSLSFIRIYSGFIKVGDLVYNSTK------KVK---EKIFRILRMFANSKKDINDAHFGDI 363 (1021)
Q Consensus 301 ~V~k~~~~~~--------~g~~~~~RV~sG~l~~gd~v~~~~~------~~~---~~i~~i~~~~g~~~~~v~~a~aGdI 363 (1021)
||.+.|.... .|-+.-+-+..|.|+.||.+-..+. ++. --.+++..+++.. ..+++|.+|-.
T Consensus 215 ~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~-~~~~ea~PGGL 293 (415)
T COG5257 215 YVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGG-EDVEEARPGGL 293 (415)
T ss_pred EEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeCC-eeeeeccCCce
Confidence 9999985332 3557888999999999999985432 111 1133455555543 57999999999
Q ss_pred EEE-ecCCc-cccCCeeccCCccccccCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEe
Q psy5021 364 VVI-VGLKE-SSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSG 441 (1021)
Q Consensus 364 v~i-~gl~~-~~~gdtl~~~~~~~~~~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g 441 (1021)
+++ ++|+- +.++|-|...-.- .+-..|+...++.+|. .-|.++.-.+-.++++. -.++|.++..
T Consensus 294 vgvGT~lDP~ltKaD~L~G~V~G---~pG~lPpv~~~~~ie~----------~LL~RvvG~~~e~kvep-ik~~E~Lml~ 359 (415)
T COG5257 294 VGVGTKLDPTLTKADALVGQVVG---KPGTLPPVWTSIRIEY----------HLLERVVGTKEELKVEP-IKTNEVLMLN 359 (415)
T ss_pred EEEecccCcchhhhhhhcccccc---CCCCCCCceEEEEEEe----------eehhhhhCccccccccc-ccCCCeEEEE
Confidence 999 67765 4556665442110 1112233344555553 12344444444555542 3577777665
Q ss_pred cCh
Q psy5021 442 MGE 444 (1021)
Q Consensus 442 ~Ge 444 (1021)
.|.
T Consensus 360 VGt 362 (415)
T COG5257 360 VGT 362 (415)
T ss_pred eec
Confidence 553
No 119
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.93 E-value=8.1e-26 Score=233.28 Aligned_cols=179 Identities=42% Similarity=0.627 Sum_probs=152.6
Q ss_pred cceeeeeeeeeccchhhhhhhcccccccccccc--ccccccCCchhhhhcCceEeeeEEEEe--eCCeEEEEEecCChhh
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEV--RAFDTIDNAPEEKERGITISTSHVEYE--SENKHYAHVDCPGHAD 726 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~--~~~~~~d~~~~e~~~G~Ti~~~~~~~~--~~~~~i~liDtpG~~~ 726 (1021)
..++++.|+++||||||+++|+........... ...+.++.+++|+++|+|++.....++ ..++.++|+|||||.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 457899999999999999999976644433211 112347899999999999999999999 8999999999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHH-HhhhccccCC-
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIR-ELLTEYDFDG- 804 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~-~~l~~~~~~~- 804 (1021)
|.+++..++..+|++|+|||+.+|...|+++++.++..+++| +|||+||||+. +.+++...+++. .+++.+++..
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~--~~~~~~~~~~~~~~l~~~~~~~~~ 159 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLI--EKELEEIIEEIKEKLLKEYGENGE 159 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSS--HHHHHHHHHHHHHHHHHHTTSTTT
T ss_pred eeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccch--hhhHHHHHHHHHHHhccccccCcc
Confidence 999999999999999999999999999999999999999999 99999999998 344556666666 6667787765
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
..++++|+||++|. |++.|+++|.+++|
T Consensus 160 ~~~~vi~~Sa~~g~-----------gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 160 EIVPVIPISALTGD-----------GIDELLEALVELLP 187 (188)
T ss_dssp STEEEEEEBTTTTB-----------THHHHHHHHHHHS-
T ss_pred ccceEEEEecCCCC-----------CHHHHHHHHHHhCc
Confidence 47899999999884 89999999998876
No 120
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.93 E-value=2.3e-24 Score=252.39 Aligned_cols=269 Identities=26% Similarity=0.367 Sum_probs=204.0
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccc-cc-----cccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GE-----VRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH 724 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~-----~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~ 724 (1021)
..+.+++||+++|||||+++|+.....+.. +. ......+|..+.|+++|+|+......+++++..+++||||||
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 458899999999999999999754333221 11 112234688999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc----
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY---- 800 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~---- 800 (1021)
.+|...+..+++.+|++|+|+|+++|...+++.++..+...++| +++++||+|+.... ...+..++++.+..-
T Consensus 90 ~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~--~~~~l~~i~~~l~~~~~p~ 166 (526)
T PRK00741 90 EDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP-IFTFINKLDRDGRE--PLELLDEIEEVLGIACAPI 166 (526)
T ss_pred hhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC-EEEEEECCcccccC--HHHHHHHHHHHhCCCCeeE
Confidence 99999999999999999999999999999999999999999999 88999999986521 111222222221100
Q ss_pred ----------------------cc------------------------------------------------------CC
Q psy5021 801 ----------------------DF------------------------------------------------------DG 804 (1021)
Q Consensus 801 ----------------------~~------------------------------------------------------~~ 804 (1021)
.| ..
T Consensus 167 ~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~ 246 (526)
T PRK00741 167 TWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAG 246 (526)
T ss_pred EeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcC
Confidence 00 01
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC---------CCCCCeeEEEEEEE---eeCCceeEEEE
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR---------ITDKPFLMPIEDVF---SISGRGTVVTG 872 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~---------~~~~p~~~~I~~~~---~v~g~G~Vv~G 872 (1021)
.-+|++..||.++. |+..||+.+.+++|.|.. +.+.+|...|..+. ..+..|.+...
T Consensus 247 ~~~PV~~GSA~~n~-----------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafv 315 (526)
T PRK00741 247 ELTPVFFGSALNNF-----------GVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFV 315 (526)
T ss_pred CeEEEEEeecccCc-----------CHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEE
Confidence 12567777887663 899999999999988742 12346777777776 34578999999
Q ss_pred EEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 873 KIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 873 ~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
||.||+++.|+.|.....++. .++..+... ...+++|.|||.+++. +..+++.||+||+.+
T Consensus 316 RV~sG~l~~g~~v~~~~~~k~--~ri~~~~~~~g~~~~~v~~a~aGDIv~v~----~l~~~~~GDTL~~~~ 380 (526)
T PRK00741 316 RVCSGKFEKGMKVRHVRTGKD--VRISNALTFMAQDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQGE 380 (526)
T ss_pred EEeccEECCCCEEEeccCCce--EEecceEEEecCCceECceeCCCCEEEEE----CCCCCccCCCccCCC
Confidence 999999999999987644433 445444332 3589999999998776 256789999998654
No 121
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.93 E-value=1.8e-24 Score=264.66 Aligned_cols=275 Identities=24% Similarity=0.316 Sum_probs=204.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccc-ccc-ccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYG-GEV-RAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~~-~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
.+++++||+|+|||||+++|+.....+.. +.. ...+.+|..+.|+++|+|++.....+++++..++|||||||.+|..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 47899999999999999999865444321 111 1236789999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEE
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 809 (1021)
.+..+++.+|++|+|+|+.+|...|+++++..+...++| +++++||+|+.... ++...+++...+.... ....
T Consensus 91 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~--~~~~~~~i~~~l~~~~----~~~~ 163 (689)
T TIGR00484 91 EVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVP-RIAFVNKMDKTGAN--FLRVVNQIKQRLGANA----VPIQ 163 (689)
T ss_pred HHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCC-EEEEEECCCCCCCC--HHHHHHHHHHHhCCCc----eeEE
Confidence 999999999999999999999999999999999999999 77899999987522 2333344444332211 0123
Q ss_pred EEecccccccCC----------------------------------------------------------CC--------
Q psy5021 810 VIGSALLALEGK----------------------------------------------------------DD-------- 823 (1021)
Q Consensus 810 i~iSa~~~~~~~----------------------------------------------------------~~-------- 823 (1021)
+|+|+..+..+. ..
T Consensus 164 ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~ 243 (689)
T TIGR00484 164 LPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNA 243 (689)
T ss_pred eccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHH
Confidence 444443332110 00
Q ss_pred ----------------CccCcchHHHHHHhhhccCCCCCC-------------------CCCCCeeEEEEEEEeeCCcee
Q psy5021 824 ----------------NQLGTTSIKKLLDVLDSSIPTPNR-------------------ITDKPFLMPIEDVFSISGRGT 868 (1021)
Q Consensus 824 ----------------~~~~~~~i~~Ll~~l~~~l~~~~~-------------------~~~~p~~~~I~~~~~v~g~G~ 868 (1021)
......|+..|++.|.+++|.|.. ..+.|+...|.+++..++.|.
T Consensus 244 l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~ 323 (689)
T TIGR00484 244 IRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPFVGQ 323 (689)
T ss_pred HHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeeecCCCCe
Confidence 000113678999999999987742 124689999999999999999
Q ss_pred EEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 869 VVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 869 Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
+..+||.+|+|+.||.|+..-.++ +.+|..|... ..+++++.|||.+++. + ..+++.|++|++..
T Consensus 324 i~~~RV~sGtL~~g~~v~~~~~~~--~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~--g--l~~~~~gdtl~~~~ 392 (689)
T TIGR00484 324 LTFVRVYSGVLKSGSYVKNSRKNK--KERVGRLVKMHANNREEIKEVRAGDICAAI--G--LKDTTTGDTLCDPK 392 (689)
T ss_pred EEEEEEEEeEEcCCCEEEeCCCCc--eEEecceEEeecCCcccccccCCCCEEEEc--C--CCCCCCCCEEeCCC
Confidence 999999999999999998642222 2345455443 3589999999999884 3 34568899998643
No 122
>KOG0466|consensus
Probab=99.93 E-value=4e-26 Score=231.88 Aligned_cols=333 Identities=27% Similarity=0.405 Sum_probs=255.1
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEE-----e--------------
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEY-----E-------------- 710 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~-----~-------------- 710 (1021)
..+.+|..||+.|||||+++++.+.. +-+.+.|-+|.+|+...+..- +
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~-------------TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~g 103 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVH-------------TVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFG 103 (466)
T ss_pred eeeeecceeccccCcceeeeeeccce-------------EEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccC
Confidence 35778999999999999999998743 245677888888888775321 0
Q ss_pred ----------e---C-----CeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEE
Q psy5021 711 ----------S---E-----NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVD-GPMPQTREHILLARQVGVPNIV 771 (1021)
Q Consensus 711 ----------~---~-----~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~-g~~~qt~e~l~~~~~~~ip~iI 771 (1021)
. . -+++.|+|+|||.-.+.+|++++...|+|+|++.+++ .+++||.||+.....+..++++
T Consensus 104 S~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhii 183 (466)
T KOG0466|consen 104 SSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHII 183 (466)
T ss_pred CCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEE
Confidence 0 0 1678899999999999999999999999999999987 4689999999999999999999
Q ss_pred EEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCC
Q psy5021 772 VFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDK 851 (1021)
Q Consensus 772 vviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~ 851 (1021)
++.||+|++..++.. +..++++.|++... .+..|++|+||.-+ +|++.+.++|.+.+|.|.|+...
T Consensus 184 ilQNKiDli~e~~A~-eq~e~I~kFi~~t~--ae~aPiiPisAQlk-----------yNId~v~eyivkkIPvPvRdf~s 249 (466)
T KOG0466|consen 184 ILQNKIDLIKESQAL-EQHEQIQKFIQGTV--AEGAPIIPISAQLK-----------YNIDVVCEYIVKKIPVPVRDFTS 249 (466)
T ss_pred EEechhhhhhHHHHH-HHHHHHHHHHhccc--cCCCceeeehhhhc-----------cChHHHHHHHHhcCCCCccccCC
Confidence 999999999743333 33456777766543 35679999999866 59999999999999999999999
Q ss_pred CeeEEEEEEEeeCCc--------eeEEEEEEEEEEeeCCCEEEEeec-------CC----eeEEEEEEEEecccccceec
Q psy5021 852 PFLMPIEDVFSISGR--------GTVVTGKIERGIVKNGEEIEIVGY-------KQ----TIKTTITGIEMFKKTLDEGL 912 (1021)
Q Consensus 852 p~~~~I~~~~~v~g~--------G~Vv~G~V~~G~l~~gd~v~i~p~-------~~----~~~~~Vksi~~~~~~~~~a~ 912 (1021)
|.++.|-+.|.+..- |-|+.|.+..|.+++||++.+-|. ++ .+.+++.|+...+.+++.|.
T Consensus 250 ~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~Av 329 (466)
T KOG0466|consen 250 PPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQFAV 329 (466)
T ss_pred CCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhhhccceeec
Confidence 999999999998753 568999999999999999999872 11 22356778888888999999
Q ss_pred cCceEEEEec---ccCccCcccceEEeeCCC-ccceeeEEEEEEEeecc---------CCCCCccccCCCEEEEEEeece
Q psy5021 913 AGENVGILLR---SVKREEVERGQVLAKIGS-IKSYNIFECEVYILSKE---------EGGRHTPFFNGYKPQFYFRTTD 979 (1021)
Q Consensus 913 ~G~~v~l~l~---~~~~~~i~~G~vl~~~~~-~~~~~~f~a~i~~~~~~---------~~~~~~~i~~G~~~~~~~~~~~ 979 (1021)
||..+|+.-+ .+...|--.|.|+...+. |..+.+++...++|..- ++.....+.+|-..++.+++..
T Consensus 330 PGGLIGVGT~~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~Llrrllgvrt~~~~k~~kv~kL~k~E~lmvNIGS~s 409 (466)
T KOG0466|consen 330 PGGLIGVGTKMDPTLCRADRLVGQVLGAVGTLPDIFTELEISYFLLRRLLGVRTKGDKKQAKVSKLVKNEILMVNIGSTS 409 (466)
T ss_pred CCceeeeccccCcchhhhhHHHHHHHhhccCCccceeEEEeehhhhhHHhccccccccccchhhhcccCcEEEEEecccc
Confidence 9999988643 223455566888887775 66788888877766522 1111245677777788777655
Q ss_pred eeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEE
Q psy5021 980 VTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFA 1018 (1021)
Q Consensus 980 ~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~ 1018 (1021)
.-+++.-.+ +| .+++.+..|+|-+.|.+..
T Consensus 410 TG~~v~~vk-------~d--~~k~~Lt~P~CteigEkiA 439 (466)
T KOG0466|consen 410 TGGRVSAVK-------AD--MAKIQLTSPVCTEIGEKIA 439 (466)
T ss_pred cCceEEEEe-------cc--eeeeEecCchhcccchhhh
Confidence 444332111 12 4678888999998885443
No 123
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.93 E-value=4.9e-24 Score=249.72 Aligned_cols=270 Identities=24% Similarity=0.338 Sum_probs=203.9
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccc-ccc-----ccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCC
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GEV-----RAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPG 723 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~~-----~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG 723 (1021)
+..+.+++||+++|||||+++|+.....+.. +.. ...+.+|..+.|+++|+|+......+++.+..++||||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 3468899999999999999999754333321 111 1235679999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc--
Q psy5021 724 HADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD-- 801 (1021)
Q Consensus 724 ~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~-- 801 (1021)
|.+|...+..+++.+|++|+|||+.++...+++.++..+...++| +|+++||+|+.... .+.+.+++++.+...-
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~--~~~ll~~i~~~l~~~~~~ 166 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRD--PLELLDEVENELKINCAP 166 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECccccCCC--HHHHHHHHHHHhCCCCcc
Confidence 999999999999999999999999999999999999999888999 88999999986411 2222333333322110
Q ss_pred ------------------------c------------------------------------------------------C
Q psy5021 802 ------------------------F------------------------------------------------------D 803 (1021)
Q Consensus 802 ------------------------~------------------------------------------------------~ 803 (1021)
| .
T Consensus 167 ~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~ 246 (527)
T TIGR00503 167 ITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHG 246 (527)
T ss_pred EEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhc
Confidence 0 0
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCC---------CCCCeeEEEEEEEe--e-CCceeEEE
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRI---------TDKPFLMPIEDVFS--I-SGRGTVVT 871 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~---------~~~p~~~~I~~~~~--v-~g~G~Vv~ 871 (1021)
..-+|+++.||.++ .|+..||+.+.+++|.|... .+.+|...|..+.. . +..|.+..
T Consensus 247 ~~~~PV~~GSA~~n-----------~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf 315 (527)
T TIGR00503 247 GEMTPVFFGTALGN-----------FGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAF 315 (527)
T ss_pred CCeeEEEEeecccC-----------ccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEE
Confidence 01134455555554 38899999999999888431 24577777777765 4 47899999
Q ss_pred EEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 872 GKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 872 G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
.||.||+++.|++|+....++ +.++..+... ..++++|.|||.+++. +..+++.||+||+..
T Consensus 316 ~RV~sG~l~~g~~v~~~~~~k--~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~----~~~~~~~GDtl~~~~ 381 (527)
T TIGR00503 316 MRVVSGKYEKGMKLKHVRTGK--DVVISDALTFMAGDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQGE 381 (527)
T ss_pred EEEeeeEEcCCCEEEecCCCC--cEEecchhhhhcCCceEcceeCCCCEEEEE----CCCCcccCCEecCCC
Confidence 999999999999998764333 3455555433 3589999999998776 256789999998743
No 124
>KOG1145|consensus
Probab=99.93 E-value=9.1e-25 Score=239.13 Aligned_cols=234 Identities=30% Similarity=0.353 Sum_probs=187.4
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee-CCeEEEEEecCChhhhH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES-ENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~-~~~~i~liDtpG~~~~~ 728 (1021)
|.-.+-+.||++||||||+++|.+.... .+ ...|+|..++.+.+.. +++.++|+|||||..|.
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VA--A~--------------E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~ 215 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVA--AG--------------EAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFS 215 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCcee--hh--------------hcCCccceeceEEEecCCCCEEEEecCCcHHHHH
Confidence 6677788999999999999999874321 11 2348898888776654 56899999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHh---hhccccCCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIREL---LTEYDFDGE 805 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~---l~~~~~~~~ 805 (1021)
.+..+|+..+|+++|||.|++|+.+||.|.+..++..++| +||++||+|..+.+ .+.+..++... ++.+| .
T Consensus 216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~Vp-iVvAinKiDkp~a~--pekv~~eL~~~gi~~E~~G---G 289 (683)
T KOG1145|consen 216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVP-IVVAINKIDKPGAN--PEKVKRELLSQGIVVEDLG---G 289 (683)
T ss_pred HHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCC-EEEEEeccCCCCCC--HHHHHHHHHHcCccHHHcC---C
Confidence 9999999999999999999999999999999999999999 99999999987622 23333333322 23333 3
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhcc--CCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS--IPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGE 883 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~--l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd 883 (1021)
++.++|+||++| +|++.|.+++.-. +-.-+.....|+...|-+..-.+|+|.+++-.|..|+|++|+
T Consensus 290 dVQvipiSAl~g-----------~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~ 358 (683)
T KOG1145|consen 290 DVQVIPISALTG-----------ENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGS 358 (683)
T ss_pred ceeEEEeecccC-----------CChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEecccccccc
Confidence 689999999988 4788877776431 111223357789999999999999999999999999999999
Q ss_pred EEEEeecCCeeEEEEEEEEecc-cccceeccCceEEEE
Q psy5021 884 EIEIVGYKQTIKTTITGIEMFK-KTLDEGLAGENVGIL 920 (1021)
Q Consensus 884 ~v~i~p~~~~~~~~Vksi~~~~-~~~~~a~~G~~v~l~ 920 (1021)
-+..+ ..+ ++|+++.-++ .++++|.|++.|.+.
T Consensus 359 vlV~G--~~w--~KVr~l~D~nGk~i~~A~Ps~pv~V~ 392 (683)
T KOG1145|consen 359 VLVAG--KSW--CKVRALFDHNGKPIDEATPSQPVEVL 392 (683)
T ss_pred EEEEe--chh--hhhhhhhhcCCCCccccCCCCceEee
Confidence 88876 344 6799988765 599999999998875
No 125
>PRK12740 elongation factor G; Reviewed
Probab=99.93 E-value=4.2e-24 Score=262.26 Aligned_cols=265 Identities=29% Similarity=0.443 Sum_probs=207.0
Q ss_pred eeeeeccchhhhhhhccccccccc-ccc-ccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHHH
Q psy5021 657 IGHVDHGKTTLTAALTKVSSEIYG-GEV-RAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMITG 734 (1021)
Q Consensus 657 ~g~~~~GKSTLi~~L~~~~~~~~~-~~~-~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~ 734 (1021)
+||+|||||||+++|+...+.+.. +.. ...+++|....|+++|+|+......+.+.+..++|||||||.+|...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 488999999999999766544332 111 123578999999999999999999999999999999999999999999999
Q ss_pred hhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc---------------
Q psy5021 735 AAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE--------------- 799 (1021)
Q Consensus 735 ~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~--------------- 799 (1021)
+..+|++++|+|++.+...++..++..+...++| +++++||+|+.... .+...+++.+.+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~--~~~~~~~l~~~l~~~~~~~~~p~~~~~~~ 157 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVP-RIIFVNKMDRAGAD--FFRVLAQLQEKLGAPVVPLQLPIGEGDDF 157 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--HHHHHHHHHHHHCCCceeEEecccCCCCc
Confidence 9999999999999999999999999999999999 77899999987421 22222333322110
Q ss_pred ----------------------------------------------------------cc--------------cCCCce
Q psy5021 800 ----------------------------------------------------------YD--------------FDGENT 807 (1021)
Q Consensus 800 ----------------------------------------------------------~~--------------~~~~~~ 807 (1021)
.. ....-+
T Consensus 158 ~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~ 237 (668)
T PRK12740 158 TGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIV 237 (668)
T ss_pred eEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 00 001135
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC-----------------CCCCCeeEEEEEEEeeCCceeEE
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR-----------------ITDKPFLMPIEDVFSISGRGTVV 870 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~-----------------~~~~p~~~~I~~~~~v~g~G~Vv 870 (1021)
|++..||++|. |++.|++.+.+++|.|.. ..+.|+.+.|.+++..++.|.++
T Consensus 238 Pv~~gSA~~~~-----------Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~ 306 (668)
T PRK12740 238 PVFCGSALKNK-----------GVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLS 306 (668)
T ss_pred EEEeccccCCc-----------cHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEE
Confidence 67778888773 899999999999988842 23568999999999999999999
Q ss_pred EEEEEEEEeeCCCEEEEeecCCeeE-EEEEEEEe-cccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 871 TGKIERGIVKNGEEIEIVGYKQTIK-TTITGIEM-FKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 871 ~G~V~~G~l~~gd~v~i~p~~~~~~-~~Vksi~~-~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
.++|.+|+|++||+|.+.+.++..+ .++..++. ...++++|.|||.+++. ++ .+++.|++|++..
T Consensus 307 ~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~--gl--~~~~~Gdtl~~~~ 373 (668)
T PRK12740 307 LVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVA--KL--KDAATGDTLCDKG 373 (668)
T ss_pred EEEEeeeEEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEe--cc--CccCCCCEEeCCC
Confidence 9999999999999999987543322 24445553 35689999999999987 43 4689999998543
No 126
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=5.9e-24 Score=252.13 Aligned_cols=270 Identities=27% Similarity=0.414 Sum_probs=207.7
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccc-ccc-ccccccCCchhhhhcCceEeeeEEEEeeCC-eEEEEEecCChhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GEV-RAFDTIDNAPEEKERGITISTSHVEYESEN-KHYAHVDCPGHAD 726 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~~-~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-~~i~liDtpG~~~ 726 (1021)
+.-+.|+++|.+||||||..+|+...+.+.. |.. ...+++|....|++||+|+..+..++.|++ +.++|||||||-|
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 4457899999999999999999865554442 222 234578999999999999999999999996 9999999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc------
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY------ 800 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~------ 800 (1021)
|...+.++++.+|+|++|+||.+|+.+||+..|+++...++| .|+++||||....+ +....+++...+...
T Consensus 89 Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp-~i~fiNKmDR~~a~--~~~~~~~l~~~l~~~~~~v~~ 165 (697)
T COG0480 89 FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVP-RILFVNKMDRLGAD--FYLVVEQLKERLGANPVPVQL 165 (697)
T ss_pred cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCC-eEEEEECccccccC--hhhhHHHHHHHhCCCceeeec
Confidence 999999999999999999999999999999999999999999 67788999987522 222333333333220
Q ss_pred --c------------------cC-CC------------------------------------------------------
Q psy5021 801 --D------------------FD-GE------------------------------------------------------ 805 (1021)
Q Consensus 801 --~------------------~~-~~------------------------------------------------------ 805 (1021)
+ |. ..
T Consensus 166 pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~ 245 (697)
T COG0480 166 PIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRK 245 (697)
T ss_pred cccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHH
Confidence 0 00 00
Q ss_pred ------ceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCC--------------------CCCCeeEEEEE
Q psy5021 806 ------NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRI--------------------TDKPFLMPIED 859 (1021)
Q Consensus 806 ------~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~--------------------~~~p~~~~I~~ 859 (1021)
..|.++-||..+ .++..||+++.+++|.|.+. .+.|+.+.+..
T Consensus 246 ~~~~~~~~pvl~gsa~kn-----------~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfK 314 (697)
T COG0480 246 GTIAGKIVPVLCGSAFKN-----------KGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFK 314 (697)
T ss_pred hhhccceeeEEeeecccC-----------CcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEE
Confidence 011222222211 36788999999999987321 26799999999
Q ss_pred EEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecc----cccceeccCceEEEEecccCccCcccceEE
Q psy5021 860 VFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK----KTLDEGLAGENVGILLRSVKREEVERGQVL 935 (1021)
Q Consensus 860 ~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~----~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl 935 (1021)
+...+..|.+..+||.||+|++||.++.... ..+.+|-.|...+ .+++++.||+.+++. + .++...|+++
T Consensus 315 i~~d~~~g~l~~~RvysGtl~~G~~v~n~~~--~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~--G--l~~~~tGdTl 388 (697)
T COG0480 315 IMTDPFVGKLTFVRVYSGTLKSGSEVLNSTK--GKKERVGRLLLMHGNEREEVDEVPAGDIVALV--G--LKDATTGDTL 388 (697)
T ss_pred eEecCCCCeEEEEEEeccEEcCCCEEEeCCC--CccEEEEEEEEccCCceeecccccCccEEEEE--c--ccccccCCee
Confidence 9999999999999999999999998887643 3346676766543 489999999999776 2 3445899999
Q ss_pred eeCC
Q psy5021 936 AKIG 939 (1021)
Q Consensus 936 ~~~~ 939 (1021)
|+.+
T Consensus 389 ~~~~ 392 (697)
T COG0480 389 CDEN 392 (697)
T ss_pred ecCC
Confidence 9655
No 127
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.92 E-value=1.9e-23 Score=246.25 Aligned_cols=291 Identities=21% Similarity=0.266 Sum_probs=184.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc-------------
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN------------- 73 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~------------- 73 (1021)
+..-|+|+||+|||||||+++|....-....+| |+|.+.....+.+...
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~g------------------giTq~iG~~~v~~~~~~~~~~~~~~~~~v 64 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAG------------------GITQHIGATEIPMDVIEGICGDLLKKFKI 64 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCC------------------ceecccCeeEeeecccccccccccccccc
Confidence 345799999999999999999975433222222 2332222222222110
Q ss_pred -cCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHH
Q psy5021 74 -KFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIID 152 (1021)
Q Consensus 74 -~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~ 152 (1021)
.+...++|||||||.+|...+.++++.+|++++|+|+++|+..++.+.++.+...++|+++++||+|+... +
T Consensus 65 ~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~-~------ 137 (590)
T TIGR00491 65 RLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPG-W------ 137 (590)
T ss_pred ccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccch-h------
Confidence 00124899999999999999999999999999999999999999999999999899999999999998531 0
Q ss_pred HHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCC
Q psy5021 153 IKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN 232 (1021)
Q Consensus 153 i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~ 232 (1021)
....+.. +.+. ...-+........+....+...+++. .
T Consensus 138 -~~~~~~~-------f~e~-----------------------sak~~~~v~~~~~~~~~~lv~~l~~~-----------G 175 (590)
T TIGR00491 138 -RSHEGRP-------FMES-----------------------FSKQEIQVQQNLDTKVYNLVIKLHEE-----------G 175 (590)
T ss_pred -hhccCch-------HHHH-----------------------HHhhhHHHHHHHHHHHHHHHHHHHhc-----------C
Confidence 0000000 0000 00000000000011111111111111 1
Q ss_pred CCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHh----CCCCccccccCCccccccCCCceEEEEEEEeec
Q psy5021 233 YSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEY----LPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHD 308 (1021)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~----lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~ 308 (1021)
+..+.+.. +. ..+..+|++++||++|.|+++|+++|..+ ++....++ +++|+.+.|..++.+
T Consensus 176 ~~~e~~~~-i~---~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~----------~~~~~~~~V~e~~~~ 241 (590)
T TIGR00491 176 FEAERFDR-VT---DFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLE----------EEGPARGTILEVKEE 241 (590)
T ss_pred ccHHhhhh-hh---hcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccC----------CCCCeEEEEEEEEEc
Confidence 22221111 11 12345789999999999999999998643 33222211 568999999999999
Q ss_pred CCCceEEEEEEEeeEEecCCEEEeCCCce--eeEeceEEEeec--------CCeecccccc--CCCEEEEecCCccccCC
Q psy5021 309 PFLGSLSFIRIYSGFIKVGDLVYNSTKKV--KEKIFRILRMFA--------NSKKDINDAH--FGDIVVIVGLKESSTGD 376 (1021)
Q Consensus 309 ~~~g~~~~~RV~sG~l~~gd~v~~~~~~~--~~~i~~i~~~~g--------~~~~~v~~a~--aGdIv~i~gl~~~~~gd 376 (1021)
++.|.++.++|++|+|+.||.|...+.+. ..+|..|+...+ .....++++. +|--+.+.||+....|+
T Consensus 242 ~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~~~aG~ 321 (590)
T TIGR00491 242 TGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDDVMAGS 321 (590)
T ss_pred CCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCCCCCCC
Confidence 99999999999999999999999877653 457777765542 1234566644 45555567777666665
Q ss_pred ee
Q psy5021 377 TL 378 (1021)
Q Consensus 377 tl 378 (1021)
.+
T Consensus 322 ~~ 323 (590)
T TIGR00491 322 PI 323 (590)
T ss_pred EE
Confidence 54
No 128
>PRK13351 elongation factor G; Reviewed
Probab=99.92 E-value=7.5e-24 Score=260.23 Aligned_cols=269 Identities=29% Similarity=0.423 Sum_probs=208.6
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccc-ccc-ccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GEV-RAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~~-~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
..+++++|+.++|||||+++|+.....+.. +.. ...+.+|..+.|+++|+|+......+++.+..++|||||||.+|.
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~ 87 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT 87 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH
Confidence 457899999999999999999865432221 111 123467889999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc--------
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY-------- 800 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~-------- 800 (1021)
..+..+++.+|++++|+|++++...++.++|..+...++| +++++||+|+...+ ++...++++..+...
T Consensus 88 ~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~--~~~~~~~i~~~l~~~~~~~~~P~ 164 (687)
T PRK13351 88 GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIP-RLIFINKMDRVGAD--LFKVLEDIEERFGKRPLPLQLPI 164 (687)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEECCCCCCCC--HHHHHHHHHHHHCCCeEEEEecc
Confidence 9999999999999999999999999999999999999999 78899999987521 222223333222110
Q ss_pred ------------------cc------------------------------------------------------------
Q psy5021 801 ------------------DF------------------------------------------------------------ 802 (1021)
Q Consensus 801 ------------------~~------------------------------------------------------------ 802 (1021)
.|
T Consensus 165 ~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~ 244 (687)
T PRK13351 165 GSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPLR 244 (687)
T ss_pred ccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 00
Q ss_pred ----CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC------------------CCCCCeeEEEEEE
Q psy5021 803 ----DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR------------------ITDKPFLMPIEDV 860 (1021)
Q Consensus 803 ----~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~------------------~~~~p~~~~I~~~ 860 (1021)
...-+|++..||+++. |++.|++.|.+++|.|.. ..+.|+.+.|.++
T Consensus 245 ~~~~~~~~~PV~~gSA~~~~-----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~ 313 (687)
T PRK13351 245 EGTRSGHLVPVLFGSALKNI-----------GIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKV 313 (687)
T ss_pred HHHHhCCEEEEEecccCcCc-----------cHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEe
Confidence 0112566667888763 889999999999988753 2356899999999
Q ss_pred EeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEe
Q psy5021 861 FSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLA 936 (1021)
Q Consensus 861 ~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~ 936 (1021)
+..++.|.++.+||.+|+|++||+|++.+.++. .+|..|... ..++++|.|||.+++. + .+++..|++|+
T Consensus 314 ~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~~--~~i~~i~~~~g~~~~~v~~~~aGdI~~i~--g--l~~~~~gdtl~ 387 (687)
T PRK13351 314 QYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKR--EKVGRLFRLQGNKREEVDRAKAGDIVAVA--G--LKELETGDTLH 387 (687)
T ss_pred eecCCCceEEEEEEeEEEEcCCCEEEeCCCCCc--eEeeeEEEEccCCeeECCccCCCCEEEEE--C--cccCccCCEEe
Confidence 999999999999999999999999998764433 344455443 3689999999998664 4 33567899998
Q ss_pred eCC
Q psy5021 937 KIG 939 (1021)
Q Consensus 937 ~~~ 939 (1021)
+..
T Consensus 388 ~~~ 390 (687)
T PRK13351 388 DSA 390 (687)
T ss_pred CCC
Confidence 643
No 129
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2e-24 Score=240.87 Aligned_cols=235 Identities=31% Similarity=0.361 Sum_probs=185.5
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC---CeEEEEEecCCh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE---NKHYAHVDCPGH 724 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~---~~~i~liDtpG~ 724 (1021)
.+|+..+..+||++||||||++.+-+.. +. .....|+|.......+..+ ...++|+|||||
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~--Va--------------~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH 65 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTN--VA--------------AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH 65 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCc--cc--------------cccCCceeeEeeeEEEEeccCCCceEEEEcCCcH
Confidence 3577788899999999999999998733 11 2223588999999988874 478999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC-
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD- 803 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~- 803 (1021)
+.|..+.-+|+.-+|+++||||+++|..+||.|-+..++..++| +||++||||..+.+ .+.+..++++. |+.
T Consensus 66 eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~n--p~~v~~el~~~----gl~~ 138 (509)
T COG0532 66 EAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVP-IVVAINKIDKPEAN--PDKVKQELQEY----GLVP 138 (509)
T ss_pred HHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCC-EEEEEecccCCCCC--HHHHHHHHHHc----CCCH
Confidence 99999999999999999999999999999999999999999999 99999999998632 23333444332 332
Q ss_pred ---CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC--CCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEE
Q psy5021 804 ---GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP--TPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGI 878 (1021)
Q Consensus 804 ---~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~--~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~ 878 (1021)
+..+.++|+||++| +|+++||+.+.-... .-+...+.+.+..|-++...+|.|.+++-.|.+|+
T Consensus 139 E~~gg~v~~VpvSA~tg-----------~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~Gt 207 (509)
T COG0532 139 EEWGGDVIFVPVSAKTG-----------EGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGT 207 (509)
T ss_pred hhcCCceEEEEeeccCC-----------CCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCe
Confidence 23478999999998 489999988753211 22334578899999999999999999999999999
Q ss_pred eeCCCEEEEeecCCeeEEEEEEEEec-ccccceeccCceEEEE
Q psy5021 879 VKNGEEIEIVGYKQTIKTTITGIEMF-KKTLDEGLAGENVGIL 920 (1021)
Q Consensus 879 l~~gd~v~i~p~~~~~~~~Vksi~~~-~~~~~~a~~G~~v~l~ 920 (1021)
|++||.+.++... .+|+.+... ..+++.+.++..+.+.
T Consensus 208 L~~GD~iv~g~~~----g~I~t~v~~~~~~i~~a~ps~~v~i~ 246 (509)
T COG0532 208 LKKGDIIVAGGEY----GRVRTMVDDLGKPIKEAGPSKPVEIL 246 (509)
T ss_pred EecCCEEEEccCC----CceEEeehhcCCCccccCCCCCeEEe
Confidence 9999999997533 345554443 4577777777555443
No 130
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.92 E-value=4e-24 Score=219.29 Aligned_cols=142 Identities=36% Similarity=0.593 Sum_probs=119.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~liDtPG~ 87 (1021)
|||+++||+|+|||||+++|++..+.+...+ ....+.|+.+.|+++|+|.......+.|.. ++.++.++|||||||
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 77 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKRE---MKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGH 77 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCC---CceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCC
Confidence 8999999999999999999998877765422 124678999999999999998888877743 455788999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHH
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDI 153 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i 153 (1021)
.+|...+..+++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+..+..+++
T Consensus 78 ~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~ 143 (179)
T cd01890 78 VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQI 143 (179)
T ss_pred hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHH
Confidence 999999999999999999999999998888888888877789999999999998654433333333
No 131
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.92 E-value=1.2e-24 Score=229.62 Aligned_cols=190 Identities=34% Similarity=0.466 Sum_probs=158.7
Q ss_pred eeeeeeeeeccchhhhhhhccccccccc---------------cccccccccCCchhhhhcCceEeeeEEEEeeCCeEEE
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYG---------------GEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYA 717 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~---------------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~ 717 (1021)
+++++||++||||||+++|+.....+.. ..++..+++|....|+++|+|++.....+++.+..++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4688999999999999999865443321 1112224789999999999999999999999999999
Q ss_pred EEecCChhhhHHHHHHHhhhCCEEEEEEECCC-------CCcHHHHHHHHHHHHcCCCeEEEEEeeccccc---hhhHHH
Q psy5021 718 HVDCPGHADYIKNMITGAAQMDGAILVCSAVD-------GPMPQTREHILLARQVGVPNIVVFLNKADCVQ---DKELLD 787 (1021)
Q Consensus 718 liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~-------g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~---~~~~~~ 787 (1021)
|||||||.+|.+.+..++..+|++|+|||+++ +...|+.+++.++..++++++||++||||+.. ++..++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999998 45678999999888888777999999999973 245577
Q ss_pred HHHHHHHHhhhccccCCCceEEEEecccccccCCCC-CccCcchHHHHHHhhhccC
Q psy5021 788 LVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDD-NQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 788 ~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~-~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+.+++..+++.+++...+++++++||++|.+..+. ....|+..++|+++|....
T Consensus 161 ~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~~~~~w~~g~~l~~~l~~~~ 216 (219)
T cd01883 161 EIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSENMPWYKGPTLLEALDSLE 216 (219)
T ss_pred HHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCCCCCCCccCCcHHHHHhCCC
Confidence 788888888888888766789999999999766544 3567888899999998753
No 132
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.92 E-value=8.5e-25 Score=230.85 Aligned_cols=131 Identities=33% Similarity=0.449 Sum_probs=116.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccc--ccc-----CCc------ccccChHHHhhhCceeeeeeeEEEeecccCc
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIG--EVH-----HGT------TITDWMQQEQERGITITSASVSIFWEVNKFK 76 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g--~~~-----~~~------~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~ 76 (1021)
||+++||+|||||||+++|++..|.+.+.+ +++ .|. +++|+.++|++||+|++.....+.|. +
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~----~ 76 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE----K 76 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC----C
Confidence 799999999999999999999999987655 222 333 38999999999999999999999998 8
Q ss_pred eeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCC-------CCchhHHHHHHHHhhcC-CCEEEEEeCcCCCCC
Q psy5021 77 YMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASS-------GIQPQTETVWFQSQKYK-VPKMIFVNKMDRIGA 144 (1021)
Q Consensus 77 ~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~-------g~~~~t~~~~~~~~~~~-~p~iiviNK~D~~~~ 144 (1021)
+.+++||||||.+|...+..+++.+|++|+|||+++ +...++.+++..+...+ .|+++|+||+|+..+
T Consensus 77 ~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~ 152 (219)
T cd01883 77 YRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTV 152 (219)
T ss_pred eEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 999999999999999999999999999999999998 56778999998887777 467889999999743
No 133
>KOG0461|consensus
Probab=99.92 E-value=4.5e-24 Score=220.46 Aligned_cols=251 Identities=20% Similarity=0.236 Sum_probs=200.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-----ccCceeEEEEc
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-----NKFKYMINIID 83 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-----~~~~~~i~liD 83 (1021)
-|++|+||+|+|||||+.+|... ..+...|.++...+||+|.+.....+.... .++..+++|+|
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~-----------~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvD 76 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSEL-----------GSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVD 76 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhh-----------ccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEe
Confidence 79999999999999999999531 124567888899999999998776655433 35567899999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCH-HHHHHHHHHHhCCcee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANY-NNCIIDIKKKFNCIVL 162 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~-~~~~~~i~~~l~~~~~ 162 (1021)
+|||...+..++.+....|..++|||+..|.+.||.+++-.........++|+||+|....+. ...++....
T Consensus 77 CPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~k------- 149 (522)
T KOG0461|consen 77 CPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAK------- 149 (522)
T ss_pred CCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHH-------
Confidence 999999999999999999999999999999999999999888888888999999999753221 111111111
Q ss_pred eeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHH
Q psy5021 163 PINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSI 242 (1021)
Q Consensus 163 ~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~ 242 (1021)
.+++.+
T Consensus 150 --------------------------------------------------------------------------k~~KtL 155 (522)
T KOG0461|consen 150 --------------------------------------------------------------------------KVRKTL 155 (522)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 111111
Q ss_pred HHHHhcCceeEEEeccccCc----ccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEE
Q psy5021 243 RKLVLKNKIIPIMCGSSLKN----KGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIR 318 (1021)
Q Consensus 243 ~~~~~~~~~~Pv~~~Sa~~~----~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~R 318 (1021)
... -.+...|++.+||..| .++++|.++|.+.+-.|... +.+||.++|...+..++.|++..+.
T Consensus 156 e~t-~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd-----------~~gpflm~vDHCF~IKGQGTV~TGT 223 (522)
T KOG0461|consen 156 EST-GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD-----------EEGPFLMAVDHCFAIKGQGTVLTGT 223 (522)
T ss_pred Hhc-CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC-----------CCCCeEEEeeeeEEeccCceEEeee
Confidence 111 1123478889999999 89999999999888777654 6899999999999999999999999
Q ss_pred EEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe
Q psy5021 319 IYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV 367 (1021)
Q Consensus 319 V~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~ 367 (1021)
|++|.++.|+.+-.+.-+...||+.+.+. +.+|.+|.+||-.++.
T Consensus 224 vl~G~~~ln~~iE~PAL~e~rkVKslqmf----~~~vtsa~~GdR~g~c 268 (522)
T KOG0461|consen 224 VLRGVLRLNTEIEFPALNEKRKVKSLQMF----KQRVTSAAAGDRAGFC 268 (522)
T ss_pred EEEeEEecCcEEeecccchhhhhhhHHHH----hhhhhhhhcccceeee
Confidence 99999999999999888877788877443 4568999999998873
No 134
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.92 E-value=3.2e-24 Score=224.72 Aligned_cols=186 Identities=28% Similarity=0.388 Sum_probs=155.8
Q ss_pred eeeeeeeeccchhhhhhhccccccccc---------------cccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEE
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYG---------------GEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAH 718 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~---------------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~l 718 (1021)
++++||+|+|||||+++|+.....+.. +.....+.+|..+.|+++|+|++.....+++++..+.|
T Consensus 2 i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~l 81 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFII 81 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEE
Confidence 578999999999999999876655441 11233457899999999999999999999999999999
Q ss_pred EecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccch-hhHHHHHHHHHHHhh
Q psy5021 719 VDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQD-KELLDLVEMEIRELL 797 (1021)
Q Consensus 719 iDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~-~~~~~~~~~~~~~~l 797 (1021)
||||||++|...+..++..+|++|+|+|++++...++++++.++...+.|++|+|+||+|+.+. +..++.+..++.+++
T Consensus 82 iDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~ 161 (208)
T cd04166 82 ADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFA 161 (208)
T ss_pred EECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888888778889999999752 345666777888888
Q ss_pred hccccCCCceEEEEecccccccCCCC-CccCcchHHHHHHhhhcc
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDD-NQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~-~~~~~~~i~~Ll~~l~~~ 841 (1021)
+.+++. ..+++++||++|.+..+. ....|+..++|+++|+..
T Consensus 162 ~~~~~~--~~~ii~iSA~~g~ni~~~~~~~~w~~g~~~~~~~~~~ 204 (208)
T cd04166 162 AKLGIE--DITFIPISALDGDNVVSRSENMPWYSGPTLLEHLETV 204 (208)
T ss_pred HHcCCC--CceEEEEeCCCCCCCccCCCCCCCCCCCcHHHHHhcC
Confidence 887763 357999999998665443 356788889999999873
No 135
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.92 E-value=6.1e-24 Score=260.24 Aligned_cols=282 Identities=27% Similarity=0.406 Sum_probs=202.2
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEE----EeeCCeEEEEEecCChhh
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVE----YESENKHYAHVDCPGHAD 726 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~----~~~~~~~i~liDtpG~~~ 726 (1021)
..+++++||.+||||||+++|+.....+........+++|..++|+++|+|++..... +++.+..++|||||||.+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 3588999999999999999998654443322112234579999999999999877654 566788999999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccch---------hhHHHHHHHHHHHhh
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQD---------KELLDLVEMEIRELL 797 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~---------~~~~~~~~~~~~~~l 797 (1021)
|...+..+++.+|++|+|+|+.+|...++++++..+...++| .|+++||+|.... .+++..+...+...+
T Consensus 99 f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 177 (720)
T TIGR00490 99 FGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVK-PVLFINKVDRLINELKLTPQELQERFIKIITEVNKLI 177 (720)
T ss_pred cHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCC-EEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHhhh
Confidence 999999999999999999999999999999999998889999 6789999998631 122233333333333
Q ss_pred hcc-c--------cCCCceEEEEeccccccc---------CCCCCc-------cCcch-------HHHHHHhhhccCCCC
Q psy5021 798 TEY-D--------FDGENTKIVIGSALLALE---------GKDDNQ-------LGTTS-------IKKLLDVLDSSIPTP 845 (1021)
Q Consensus 798 ~~~-~--------~~~~~~~ii~iSa~~~~~---------~~~~~~-------~~~~~-------i~~Ll~~l~~~l~~~ 845 (1021)
... + +..........|++.++. ...... ..... +..|++.+.+++|.|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~lPsP 257 (720)
T TIGR00490 178 KAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHLPSP 257 (720)
T ss_pred hccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHhCCCh
Confidence 221 0 000001111223332210 000000 00001 356889998888887
Q ss_pred CC-------------------------CCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEE
Q psy5021 846 NR-------------------------ITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITG 900 (1021)
Q Consensus 846 ~~-------------------------~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vks 900 (1021)
.. ..+.|+...|.+++..++.|++++|+|.+|+|++||.|.+.+.+. +.+|..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~--~~kv~~ 335 (720)
T TIGR00490 258 IEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKA--KARIQQ 335 (720)
T ss_pred hhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCC--eeEeeE
Confidence 42 124589999999998899999999999999999999999987554 367788
Q ss_pred EEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 901 IEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 901 i~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
|... ..+++.|.|||+|++. + ..++.+||+||+++
T Consensus 336 l~~~~g~~~~~v~~a~aGdIv~i~--g--l~~~~~GdtL~~~~ 374 (720)
T TIGR00490 336 VGVYMGPERVEVDEIPAGNIVAVI--G--LKDAVAGETICTTV 374 (720)
T ss_pred EEEeccCCccCccEECCCCEEEEE--C--ccccccCceeecCC
Confidence 7765 3589999999999885 3 34678999998654
No 136
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.9e-24 Score=227.58 Aligned_cols=269 Identities=26% Similarity=0.379 Sum_probs=202.7
Q ss_pred ceeeeeeeeeccchhhhhhhccc------cccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKV------SSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA 725 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~------~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~ 725 (1021)
-|-++++|+++|||||...|+-. .+.+........+..|....|++||+++..+...|++.++.++|+|||||+
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 46689999999999999998732 222223333344456888999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc--hhhHHHHHHHHHHHhhhcccc-
Q psy5021 726 DYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ--DKELLDLVEMEIRELLTEYDF- 802 (1021)
Q Consensus 726 ~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~--~~~~~~~~~~~~~~~l~~~~~- 802 (1021)
+|...+.+.+..+|.|+.||||..|+.+||+..+..|+..++| |+-++||+|... +-+.++++++++.--+-.+.|
T Consensus 93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~PitWP 171 (528)
T COG4108 93 DFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIP-IFTFINKLDREGRDPLELLDEIEEELGIQCAPITWP 171 (528)
T ss_pred ccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCc-eEEEeeccccccCChHHHHHHHHHHhCcceeccccc
Confidence 9999999999999999999999999999999999999999999 999999999864 234455555444311111111
Q ss_pred ---------------------------------------------------------------------------CCCce
Q psy5021 803 ---------------------------------------------------------------------------DGENT 807 (1021)
Q Consensus 803 ---------------------------------------------------------------------------~~~~~ 807 (1021)
.++-.
T Consensus 172 IG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~~T 251 (528)
T COG4108 172 IGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGELT 251 (528)
T ss_pred ccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcCCcc
Confidence 01113
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC---------CCC---CCeeEEEEEEEeeCCceeEEEEEEE
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR---------ITD---KPFLMPIEDVFSISGRGTVVTGKIE 875 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~---------~~~---~p~~~~I~~~~~v~g~G~Vv~G~V~ 875 (1021)
|++..||+.+ .|++.+|+.+.++.|+|.. +.+ ..|.|-|+-...-+..-+++.-+|.
T Consensus 252 PVFFGSAl~N-----------FGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~ 320 (528)
T COG4108 252 PVFFGSALGN-----------FGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVC 320 (528)
T ss_pred ceEehhhhhc-----------cCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEec
Confidence 4555555544 4889999999998887742 112 2456666666666677899999999
Q ss_pred EEEeeCCCEEEEeecCCeeEEEEEEEE----ecccccceeccCceEEEEecccCccCcccceEEeeC
Q psy5021 876 RGIVKNGEEIEIVGYKQTIKTTITGIE----MFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKI 938 (1021)
Q Consensus 876 ~G~l~~gd~v~i~p~~~~~~~~Vksi~----~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~ 938 (1021)
||....|+++...-.++. +++..-+ ..++.++.|.|||.+||.-.| -++.||+++.-
T Consensus 321 SGkferGMkv~h~rtGK~--~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG----~~~IGDT~t~G 381 (528)
T COG4108 321 SGKFERGMKVTHVRTGKD--VKLSDALTFMAQDRETVEEAYAGDIIGLHNHG----TIQIGDTFTEG 381 (528)
T ss_pred cccccCCceeeeeecCCc--eEecchHhhhhhhhhhhhhccCCCeEeccCCC----ceeecceeecC
Confidence 999999999988755543 2333322 235789999999999987543 47889999754
No 137
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.91 E-value=2.9e-24 Score=225.05 Aligned_cols=131 Identities=28% Similarity=0.331 Sum_probs=117.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCc--cccccc-----------CCcccccChHHHhhhCceeeeeeeEEEeecccCc
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSH--KIGEVH-----------HGTTITDWMQQEQERGITITSASVSIFWEVNKFK 76 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~--~~g~~~-----------~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~ 76 (1021)
||+|+||+|||||||+++|++..+.+. .++.++ ++.+++|+.+.|++||+|++.....+.|. +
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----~ 76 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP----K 76 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC----C
Confidence 699999999999999999999999887 334333 45788999999999999999999999998 8
Q ss_pred eeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCC
Q psy5021 77 YMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGA 144 (1021)
Q Consensus 77 ~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~ 144 (1021)
..++|||||||.+|..++..+++.+|++|+|+|+++++..+++.++..+...++| +|+|+||+|+...
T Consensus 77 ~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 77 RKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred ceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccC
Confidence 8999999999999999999999999999999999999999999998888888866 5668999998643
No 138
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.91 E-value=1.1e-23 Score=221.68 Aligned_cols=134 Identities=34% Similarity=0.526 Sum_probs=119.9
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCC-cccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEEcCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHG-TTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINIIDTPG 86 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~-~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~liDtPG 86 (1021)
|||+|+||+|+|||||+++|++..+.+...|+...+ .+++|+.++|+++|+|+......+.|.. ++..+.+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 899999999999999999999998887654443333 5678999999999999999999998874 35568999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
|.+|...+..+++.+|++|+|+|+.++...+++.+++.+...++|+++|+||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 99999999999999999999999999998899888888888889999999999986
No 139
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=3.7e-23 Score=214.77 Aligned_cols=144 Identities=38% Similarity=0.546 Sum_probs=124.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
++|||+++|+.|+|||||+++|++..+.+...+.+ ..+.+|+.+.|..+|+|+......+.++ ++.+++|||||
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~--~~~~~~~~~~e~~~g~t~~~~~~~~~~~----~~~~~l~DtpG 74 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEV--EERVMDSNDLERERGITILAKNTAVTYK----DTKINIVDTPG 74 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcc--cccccccchhHHhcccccccceeEEEEC----CEEEEEEECCC
Confidence 48999999999999999999999877766543322 2467899999999999999988888888 89999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHH
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKK 156 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~ 156 (1021)
|.+|...+..+++.+|++++|+|++++...+++.+++.+...++|+++|+||+|+...+....++++.+.
T Consensus 75 ~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~ 144 (194)
T cd01891 75 HADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDL 144 (194)
T ss_pred cHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999998888888888888889999999999999766665555555443
No 140
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.91 E-value=1.2e-23 Score=199.61 Aligned_cols=119 Identities=46% Similarity=0.761 Sum_probs=112.4
Q ss_pred CeEEEEeeccccee-eeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcc
Q psy5021 467 PQVSYKESIKKIVT-QEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVV 545 (1021)
Q Consensus 467 p~V~yrEti~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl 545 (1021)
|+|+|||||+++++ ....|+++.|+.++|+.+.++++|.+ +.++.|.+++.++.+|++|+++|++||++++++|||
T Consensus 1 pqV~yrEti~~~~~~~~~~~~~~~g~~~~~a~v~~~~~P~~---~~~~~~~~~~~~~~l~~~~~~ai~~G~~~a~~~Gpl 77 (120)
T PF03764_consen 1 PQVAYRETITKEVEGVEETFKRQYGGKRQFAKVILRVEPLE---GGGNIFVDETEGGQLPKEFQDAIEEGFQSALSSGPL 77 (120)
T ss_dssp EEEETEEEESS-EEHEEEEEEEECTSSEEEEEEEEEEEETS---TSSEEEEESSSTTSSGGGGHHHHHHHHHHHHCSSTT
T ss_pred CccccchhcCccHHHHHHHHHHHhCCCCceEEEEEEEeecc---cCCceeeeccccccccHHHHHHHhhhhhheeccccc
Confidence 89999999999999 89999999999999999999999986 889999999999999999999999999999999999
Q ss_pred cccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcC
Q psy5021 546 LGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKAN 588 (1021)
Q Consensus 546 ~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 588 (1021)
+||||+||+|+|.++.+|+++|++.+|+.|+++||++||++|+
T Consensus 78 ~g~pv~~v~v~l~~~~~~~~~s~~~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 78 CGYPVTDVKVTLTDGEYHEVDSSPGAFRAAARRAFREALKKAG 120 (120)
T ss_dssp TSSEB-SEEEEEEEEEC-TTTBSHHHHHHHHHHHHHHHHHHS-
T ss_pred CCCceEEEEEEEEEeeecCCcCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999985
No 141
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.90 E-value=1.1e-22 Score=249.88 Aligned_cols=244 Identities=27% Similarity=0.284 Sum_probs=183.1
Q ss_pred ccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC------------------eEEEEEecCC
Q psy5021 662 HGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN------------------KHYAHVDCPG 723 (1021)
Q Consensus 662 ~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~------------------~~i~liDtpG 723 (1021)
++||||+++|.+.. -..+...|+|++++...+..+. ..++||||||
T Consensus 472 ~~KTtLLD~iR~t~----------------v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPG 535 (1049)
T PRK14845 472 VHNTTLLDKIRKTR----------------VAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPG 535 (1049)
T ss_pred cccccHHHHHhCCC----------------cccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCC
Confidence 34999999999833 1334456899998887776542 1289999999
Q ss_pred hhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hh----------------hHH
Q psy5021 724 HADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-DK----------------ELL 786 (1021)
Q Consensus 724 ~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~----------------~~~ 786 (1021)
|++|...+..++..+|++++|+|+++|...|+.+++..+...++| +|+|+||+|+.. +. ...
T Consensus 536 he~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~ 614 (1049)
T PRK14845 536 HEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTP-FVVAANKIDLIPGWNISEDEPFLLNFNEQDQHAL 614 (1049)
T ss_pred cHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCC-EEEEEECCCCccccccccchhhhhhhhhhHHHHH
Confidence 999998888888999999999999999999999999999999999 999999999863 21 011
Q ss_pred HHHHHHHHH---hhhccccCC----------CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC-----CCCCC
Q psy5021 787 DLVEMEIRE---LLTEYDFDG----------ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP-----TPNRI 848 (1021)
Q Consensus 787 ~~~~~~~~~---~l~~~~~~~----------~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~-----~~~~~ 848 (1021)
+++..++.+ .|...|+.. ..++++|+||++| +|+++|+++|....+ .....
T Consensus 615 ~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tG-----------eGId~Ll~~l~~l~~~~l~~~L~~~ 683 (1049)
T PRK14845 615 TELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTG-----------EGIPELLMMVAGLAQKYLEERLKLN 683 (1049)
T ss_pred HHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCC-----------CCHHHHHHHHHHhhHHhhhhhhccC
Confidence 222222112 234455432 3579999999998 488999988864222 12234
Q ss_pred CCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec------------ccccceeccCce
Q psy5021 849 TDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF------------KKTLDEGLAGEN 916 (1021)
Q Consensus 849 ~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~------------~~~~~~a~~G~~ 916 (1021)
.+.|++++|.+++.++|.|+|++|.|.+|+|++||.+.++|....+.++|+++..+ ...+++|.|+.-
T Consensus 684 ~~~~~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~ 763 (1049)
T PRK14845 684 VEGYAKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAG 763 (1049)
T ss_pred CCCceEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCc
Confidence 57899999999999999999999999999999999999998766667899999853 235667777766
Q ss_pred EEEEecccCccCcccceEE
Q psy5021 917 VGILLRSVKREEVERGQVL 935 (1021)
Q Consensus 917 v~l~l~~~~~~~i~~G~vl 935 (1021)
|.+...+++ .+..|+-+
T Consensus 764 vki~a~gl~--~~~aG~~~ 780 (1049)
T PRK14845 764 VKIAAPGLE--EVLAGSPI 780 (1049)
T ss_pred eEEecCCcc--ccCCCCeE
Confidence 666544432 23455544
No 142
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.90 E-value=2.8e-23 Score=193.87 Aligned_cols=115 Identities=29% Similarity=0.414 Sum_probs=106.4
Q ss_pred EEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCccccc
Q psy5021 469 VSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGY 548 (1021)
Q Consensus 469 V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~ 548 (1021)
|+|||||+++++. .+.++.++++|||+|.++++|++ +|.|+.|.+++.++.+|++|++||++|+++++++||| ||
T Consensus 1 VaYRETI~~~~~~--~~~~~~~~~~~~a~v~l~veP~~--~g~g~~f~~~~~~~~ip~~~~~aie~g~~~al~~G~l-G~ 75 (115)
T cd01684 1 VIYKERPLGTGEG--VEHIEVPPNPFWATVGLRVEPLP--RGSGLQYESEVSLGSLPRSFQNAVEETVRETLQQGLY-GW 75 (115)
T ss_pred CceEEEeCCcEEE--EEEEccCCCcEEEEEEEEEEECC--CCCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhcCCC-CC
Confidence 6899999998763 44445568888999999999997 7889999999999999999999999999999999999 99
Q ss_pred ceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcC
Q psy5021 549 PVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKAN 588 (1021)
Q Consensus 549 pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 588 (1021)
||+||+|+|.++.+|+++|++++|+.|+++|+++|+.+|+
T Consensus 76 pv~dv~V~l~~~~~h~~~ss~~af~~Aa~~a~~~a~~~a~ 115 (115)
T cd01684 76 EVTDCKVTLTYGRYHSPVSTAADFRELTPRVLRQALKKAG 115 (115)
T ss_pred CEeeEEEEEEEeeecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999874
No 143
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=1.7e-22 Score=210.77 Aligned_cols=120 Identities=28% Similarity=0.336 Sum_probs=102.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc---------------
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN--------------- 73 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~--------------- 73 (1021)
+|||++||.|||||||+++|. ....|+.+.|.+||+|+..+..++.|...
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~---------------~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALS---------------GVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKE 65 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHh---------------CCCCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccc
Confidence 599999999999999999993 13368889999999999999888887510
Q ss_pred --------c------CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-CchhHHHHHHHHhhcCC-CEEEEEe
Q psy5021 74 --------K------FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-IQPQTETVWFQSQKYKV-PKMIFVN 137 (1021)
Q Consensus 74 --------~------~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-~~~~t~~~~~~~~~~~~-p~iiviN 137 (1021)
+ ..++++|||||||.+|...+.+++..+|++++|+|++++ ...++...|..+...++ |+++|+|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvN 145 (203)
T cd01888 66 DSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQN 145 (203)
T ss_pred ccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEE
Confidence 0 127899999999999999999999999999999999984 67888888888776676 5888999
Q ss_pred CcCCCC
Q psy5021 138 KMDRIG 143 (1021)
Q Consensus 138 K~D~~~ 143 (1021)
|+|+..
T Consensus 146 K~Dl~~ 151 (203)
T cd01888 146 KIDLVK 151 (203)
T ss_pred chhccC
Confidence 999864
No 144
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.88 E-value=2.1e-21 Score=241.25 Aligned_cols=283 Identities=22% Similarity=0.362 Sum_probs=194.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC----------------CeE
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE----------------NKH 715 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~----------------~~~ 715 (1021)
.++|++||++||||||+++|+.....+........+++|..++|+++|+|++.....+.+. ++.
T Consensus 20 rni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
T PLN00116 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYL 99 (843)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceE
Confidence 4789999999999999999998766555433334456899999999999999887666653 577
Q ss_pred EEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc------hh---hHH
Q psy5021 716 YAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ------DK---ELL 786 (1021)
Q Consensus 716 i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~------~~---~~~ 786 (1021)
++|+|||||.+|..++..+++.+|+||+||||.+|+..||+.+|..+...++| +|+++||||+.- .+ ..+
T Consensus 100 inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p-~i~~iNK~D~~~~~~~~~~~~~~~~~ 178 (843)
T PLN00116 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEEAYQTF 178 (843)
T ss_pred EEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCC-EEEEEECCcccchhhcCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999 788999999871 11 235
Q ss_pred HHHHHHHHHhhhccc--------cCCCceEEEEecccccc--------------------------------c--C----
Q psy5021 787 DLVEMEIRELLTEYD--------FDGENTKIVIGSALLAL--------------------------------E--G---- 820 (1021)
Q Consensus 787 ~~~~~~~~~~l~~~~--------~~~~~~~ii~iSa~~~~--------------------------------~--~---- 820 (1021)
+.+.++++..+..++ +++..-.++..|+..++ . +
T Consensus 179 ~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~~~~~ 258 (843)
T PLN00116 179 SRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWT 258 (843)
T ss_pred HHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCCceEE
Confidence 555566652222221 11111112222331110 0 0
Q ss_pred -CC--CC--------------------------------------ccC------------------c-chHHHHHHhhhc
Q psy5021 821 -KD--DN--------------------------------------QLG------------------T-TSIKKLLDVLDS 840 (1021)
Q Consensus 821 -~~--~~--------------------------------------~~~------------------~-~~i~~Ll~~l~~ 840 (1021)
.+ .. ... | .+...|++.+.+
T Consensus 259 ~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~s~~Lld~i~~ 338 (843)
T PLN00116 259 TKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALLEMIIF 338 (843)
T ss_pred ecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCChHHHHHHHHH
Confidence 00 00 000 0 011456777777
Q ss_pred cCCCCCC-------------------------CCCCCeeEEEEEEEeeCCcee-EEEEEEEEEEeeCCCEEEEeecCC--
Q psy5021 841 SIPTPNR-------------------------ITDKPFLMPIEDVFSISGRGT-VVTGKIERGIVKNGEEIEIVGYKQ-- 892 (1021)
Q Consensus 841 ~l~~~~~-------------------------~~~~p~~~~I~~~~~v~g~G~-Vv~G~V~~G~l~~gd~v~i~p~~~-- 892 (1021)
++|.|.. ..+.|+...|..++..+..|. ++.+||.+|+|+.||.|++...+.
T Consensus 339 ~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~n~~~ 418 (843)
T PLN00116 339 HLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGPNYVP 418 (843)
T ss_pred hCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCCCCCC
Confidence 7877731 113478888888887777776 899999999999999998643211
Q ss_pred eeE-----EEEEEEEec----ccccceeccCceEEEEecccCccC-cccceEEeeCC
Q psy5021 893 TIK-----TTITGIEMF----KKTLDEGLAGENVGILLRSVKREE-VERGQVLAKIG 939 (1021)
Q Consensus 893 ~~~-----~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~-i~~G~vl~~~~ 939 (1021)
..+ .+|..|... ..+++++.||+.+++.- ..+ +..|++|++..
T Consensus 419 ~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~g----l~~~~~~gdTL~~~~ 471 (843)
T PLN00116 419 GEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVG----LDQFITKNATLTNEK 471 (843)
T ss_pred CCccccceeEhheEEEecCCCceECcEECCCCEEEEEe----ecccccCCceecCCc
Confidence 001 244444433 25789999999998862 222 45588887543
No 145
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=6.9e-22 Score=204.87 Aligned_cols=123 Identities=28% Similarity=0.424 Sum_probs=107.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec----------ccCceeE
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV----------NKFKYMI 79 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~----------~~~~~~i 79 (1021)
||+++||+|+|||||+++|+... +...+|...+|++||+|+.....++.|.. ++.++.+
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~-----------~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIA-----------STAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQI 70 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhcc-----------chhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceE
Confidence 89999999999999999997531 23567888999999999999988888762 2346899
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
++||||||.+|......+++.+|++++|+|+.++.+.++.+.+..+...++|+++++||+|+..
T Consensus 71 ~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 71 TLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 9999999999999999999999999999999999988988888777777899999999999864
No 146
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.88 E-value=5.6e-22 Score=186.35 Aligned_cols=116 Identities=53% Similarity=0.883 Sum_probs=112.1
Q ss_pred EEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccce
Q psy5021 471 YKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPV 550 (1021)
Q Consensus 471 yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv 550 (1021)
|||||+++++.++.+++++||++|||.+.++++|++ ++.++.|.+++.++.+|++|+++|++||++++++|||+||||
T Consensus 1 YrEti~~~~~~~~~~~~~~gg~~~~a~v~l~v~P~~--~g~g~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv 78 (116)
T cd01434 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLP--RGSGFEFVNKIVGGAIPKEYIPAVEKGFREALEKGPLAGYPV 78 (116)
T ss_pred CCcccCceeeEEEEEEEcCCCCCeEEEEEEEEEECC--CCCCCEEEEeccCCccCHHHHHHHHHHHHHHHhcCcccCCcc
Confidence 899999999878999999999999999999999998 788999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcC
Q psy5021 551 IKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKAN 588 (1021)
Q Consensus 551 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 588 (1021)
+||+|+|.++.+|+.+|++++|+.|+++|+++||.+|+
T Consensus 79 ~~v~V~l~~~~~~~~~s~~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01434 79 VDVKVTLYDGSYHDVDSSEMAFKIAARMAFKEAFKKAK 116 (116)
T ss_pred ccEEEEEEeceeecCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999874
No 147
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.87 E-value=8.2e-22 Score=206.04 Aligned_cols=189 Identities=28% Similarity=0.375 Sum_probs=143.5
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC----------CeEEEEEecC
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE----------NKHYAHVDCP 722 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~----------~~~i~liDtp 722 (1021)
+++++||++||||||+++|+.....+........+++|....|++||+|++.+...+.+. +..++|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 468899999999999999987654433222223457899999999999999886655544 6788999999
Q ss_pred ChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecccc------ch---hhHHHHHHHHH
Q psy5021 723 GHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCV------QD---KELLDLVEMEI 793 (1021)
Q Consensus 723 G~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~------~~---~~~~~~~~~~~ 793 (1021)
||.+|...+..+++.+|++++|||+.+|...|+++++..+...++| +|+++||+|+. .. ..++..+.+++
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~ 160 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDRLILELKLSPEEAYQRLARIIEQV 160 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCcchhhhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999989998 89999999975 21 23556666777
Q ss_pred HHhhhccc-------------cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 794 RELLTEYD-------------FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 794 ~~~l~~~~-------------~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
..+++.+. +.+.+-.++..||+.|+.-. .. ....+..+++.+.+++|.|
T Consensus 161 n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~-~~--~f~~~~~~~~~~~~~~~~p 222 (222)
T cd01885 161 NAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFT-II--KFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred hHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEec-cc--cccchHHHHHHHHhhCCCC
Confidence 77666552 11111126777888775221 11 1224567889888888754
No 148
>PTZ00416 elongation factor 2; Provisional
Probab=99.87 E-value=7.3e-21 Score=235.76 Aligned_cols=284 Identities=26% Similarity=0.411 Sum_probs=194.2
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC----------CeEEEEEec
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE----------NKHYAHVDC 721 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~----------~~~i~liDt 721 (1021)
.++|++||++||||||+++|+...+.+........+++|..++|++||+|++.+...+.+. ++.++|+||
T Consensus 20 rni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDt 99 (836)
T PTZ00416 20 RNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDS 99 (836)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcC
Confidence 3889999999999999999997655443322222345899999999999999887666654 567999999
Q ss_pred CChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecccc----c--hh---hHHHHHHHH
Q psy5021 722 PGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCV----Q--DK---ELLDLVEME 792 (1021)
Q Consensus 722 pG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~----~--~~---~~~~~~~~~ 792 (1021)
|||.+|...+..+++.+|+||+|||+.+|+..|++.+|..+...++| +|+++||||+. + .+ ..++.+.++
T Consensus 100 PG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p-~iv~iNK~D~~~~~~~~~~~~~~~~~~~ii~~ 178 (836)
T PTZ00416 100 PGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIR-PVLFINKVDRAILELQLDPEEIYQNFVKTIEN 178 (836)
T ss_pred CCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCC-EEEEEEChhhhhhhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 88899999986 2 11 235556666
Q ss_pred HHHhhhcc--------ccCCCceEEEEeccccc---------------------------c-----c--CC---------
Q psy5021 793 IRELLTEY--------DFDGENTKIVIGSALLA---------------------------L-----E--GK--------- 821 (1021)
Q Consensus 793 ~~~~l~~~--------~~~~~~~~ii~iSa~~~---------------------------~-----~--~~--------- 821 (1021)
++..+..+ .+.+....+...|+..| + . +.
T Consensus 179 in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~~~~~~~~~~ 258 (836)
T PTZ00416 179 VNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWIKDETNA 258 (836)
T ss_pred HHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCCEEEeccCCc
Confidence 66555421 11111111222232210 0 0 00
Q ss_pred ---------------------------CCC-----------ccC-----cch--------------HHHHHHhhhccCCC
Q psy5021 822 ---------------------------DDN-----------QLG-----TTS--------------IKKLLDVLDSSIPT 844 (1021)
Q Consensus 822 ---------------------------~~~-----------~~~-----~~~--------------i~~Ll~~l~~~l~~ 844 (1021)
++. ... ... ++.|++++.+++|.
T Consensus 259 ~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~Lld~i~~~lPs 338 (836)
T PTZ00416 259 QGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADTLLEMIVDHLPS 338 (836)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHHHHHHHHHhCCC
Confidence 000 000 000 14577778788887
Q ss_pred CCCC-------------------------CCCCeeEEEEEEEeeCCcee-EEEEEEEEEEeeCCCEEEEeecCCe--eE-
Q psy5021 845 PNRI-------------------------TDKPFLMPIEDVFSISGRGT-VVTGKIERGIVKNGEEIEIVGYKQT--IK- 895 (1021)
Q Consensus 845 ~~~~-------------------------~~~p~~~~I~~~~~v~g~G~-Vv~G~V~~G~l~~gd~v~i~p~~~~--~~- 895 (1021)
|... .+.|+...|..+...+..|. +..+||.||+|+.||.|++...+.. .+
T Consensus 339 P~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~~~~~~~~~e 418 (836)
T PTZ00416 339 PKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYVPGKKE 418 (836)
T ss_pred hhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeCCCCCCCCcc
Confidence 7310 13477778888877788888 7999999999999999986432110 01
Q ss_pred ----EEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 896 ----TTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 896 ----~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
.+|..|... ..++++|.||+.|++. +++..-.+.| +|++..
T Consensus 419 ~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~--gl~~~~~~tg-TL~~~~ 467 (836)
T PTZ00416 419 DLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLV--GVDQYLVKSG-TITTSE 467 (836)
T ss_pred cchheecceeEEecCCCceECcEECCCCEEEEE--ecccceecce-eecCCC
Confidence 124444433 2489999999999886 2222225678 776543
No 149
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.87 E-value=7.4e-22 Score=207.59 Aligned_cols=145 Identities=21% Similarity=0.287 Sum_probs=114.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-----------------
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV----------------- 72 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~----------------- 72 (1021)
.|+++||.++|||||+++|.. +.... |. ......+|.+++|.++|+|+..+...+.+..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~~~-~~-~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 76 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GELDN-GR-GKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDI 76 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCcCC-CC-CeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccc
Confidence 378999999999999999974 22211 10 1123567889999999999754432232221
Q ss_pred ---ccCceeEEEEcCCCCCCcHHHHHHHhh--ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC-CH
Q psy5021 73 ---NKFKYMINIIDTPGHVDFTIEVERSLR--VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA-NY 146 (1021)
Q Consensus 73 ---~~~~~~i~liDtPG~~~f~~~~~~~l~--~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~-~~ 146 (1021)
...++.++|+|||||.+|...+.+++. .+|++++|+|+.+|...++++++.++...++|+++|+||+|+... .+
T Consensus 77 ~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 77 EICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHH
Confidence 123678999999999999999999986 799999999999999999999999999999999999999998654 36
Q ss_pred HHHHHHHHHHhC
Q psy5021 147 NNCIIDIKKKFN 158 (1021)
Q Consensus 147 ~~~~~~i~~~l~ 158 (1021)
.+.++++.+.|.
T Consensus 157 ~~~~~~l~~~L~ 168 (224)
T cd04165 157 QETLKDLKRILK 168 (224)
T ss_pred HHHHHHHHHHhc
Confidence 677777777764
No 150
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.87 E-value=2.4e-20 Score=229.25 Aligned_cols=275 Identities=21% Similarity=0.248 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccC--------------ceeEEEEcCCC
Q psy5021 21 KTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKF--------------KYMINIIDTPG 86 (1021)
Q Consensus 21 KTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~--------------~~~i~liDtPG 86 (1021)
||||+++|...+- +.+...|||.+-.+..+.+....+ ...++||||||
T Consensus 474 KTtLLD~iR~t~v------------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPG 535 (1049)
T PRK14845 474 NTTLLDKIRKTRV------------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPG 535 (1049)
T ss_pred cccHHHHHhCCCc------------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCC
Confidence 9999999953222 223566899888887777653110 12389999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC-CCCH---HHHHHHHHHHhCCcee
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI-GANY---NNCIIDIKKKFNCIVL 162 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~-~~~~---~~~~~~i~~~l~~~~~ 162 (1021)
|.+|.....++++.+|++++|+|+++|++.|+.+.+..+...++|+++++||+|+. ++.. ......++...
T Consensus 536 he~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~----- 610 (1049)
T PRK14845 536 HEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQD----- 610 (1049)
T ss_pred cHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhH-----
Confidence 99999999999999999999999999999999999999999999999999999985 3221 00001110000
Q ss_pred eeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHH---HHHHhcCCCHHHHHHHHcCCCCHHHHH
Q psy5021 163 PINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNEL---MLETLSNNDEFFLEKYINNNYSINDIK 239 (1021)
Q Consensus 163 ~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~e~~~~~d~~l~e~~l~~~~~~~~~~ 239 (1021)
.....+...+ +...+++. .+..+..
T Consensus 611 ----------------------------------------~~~~~el~~~l~~v~~~L~~~-----------G~~~e~~- 638 (1049)
T PRK14845 611 ----------------------------------------QHALTELEIKLYELIGKLYEL-----------GFDADRF- 638 (1049)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHhhHHHhc-----------Ccchhhh-
Confidence 0000011111 11111111 1111111
Q ss_pred HHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCcccccc-CCCceEEEEEEEeecCCCceEEEEE
Q psy5021 240 NSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINL-NSNKFVSLVFKIFHDPFLGSLSFIR 318 (1021)
Q Consensus 240 ~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~-~~~p~~~~V~k~~~~~~~g~~~~~R 318 (1021)
..... .+..+|++++||++|.|++.|+++|....+.-.+.. ... +++|+.++|..++.+++.|.++.+.
T Consensus 639 ~~~~d---~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~-------L~~~~~~~~~g~VlEv~~~kG~G~vvt~i 708 (1049)
T PRK14845 639 DRVQD---FTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEER-------LKLNVEGYAKGTILEVKEEKGLGTTIDAI 708 (1049)
T ss_pred hhhhh---cCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhh-------hccCCCCceEEEEEEEEEecCceeEEEEE
Confidence 11111 145688999999999999999998875433211100 011 5689999999999999999999999
Q ss_pred EEeeEEecCCEEEeCCCce--eeEeceEEEe--------ecCCeeccccccCCCEEEE--ecCCccccCCeecc
Q psy5021 319 IYSGFIKVGDLVYNSTKKV--KEKIFRILRM--------FANSKKDINDAHFGDIVVI--VGLKESSTGDTLCS 380 (1021)
Q Consensus 319 V~sG~l~~gd~v~~~~~~~--~~~i~~i~~~--------~g~~~~~v~~a~aGdIv~i--~gl~~~~~gdtl~~ 380 (1021)
|++|+|+.||.|...+.+. ..+|..++.. .+....+++++.|..-+-| .|++.+..|+.+.-
T Consensus 709 v~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~aG~~~~v 782 (1049)
T PRK14845 709 IYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVLAGSPIRI 782 (1049)
T ss_pred EEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccccCCCCeEEE
Confidence 9999999999999877654 4567766532 1224567888888777766 48888888877643
No 151
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.87 E-value=1.8e-21 Score=183.64 Aligned_cols=116 Identities=31% Similarity=0.564 Sum_probs=111.7
Q ss_pred EEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccce
Q psy5021 471 YKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPV 550 (1021)
Q Consensus 471 yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv 550 (1021)
|||||.++++..+.+++++||+++|+++.++++|++ +++++.|.+++.++.+|++|+++|++||++++++|||||+||
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~--~~~~~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~pv 78 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLE--RGSGVRVVDPVDEELLPAELKEAVEEGIRDACASGPLTGYPL 78 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECC--CCCCcEEEEecCCCcCCHHHHHHHHHHHHHHHhcCcccCCce
Confidence 999999999888999999999999999999999998 778999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcC
Q psy5021 551 IKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKAN 588 (1021)
Q Consensus 551 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 588 (1021)
+|++|+|.++.+|+.++++++|+.|+++||++||.+|+
T Consensus 79 ~~v~v~l~~~~~~~~~~~~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01680 79 TDVRVTVLDVPYHEGVSTEAGFRAAAGRAFESAAQKAG 116 (116)
T ss_pred eeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999874
No 152
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.87 E-value=1.9e-21 Score=204.48 Aligned_cols=175 Identities=27% Similarity=0.340 Sum_probs=140.2
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEE------------------------EE
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHV------------------------EY 709 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~------------------------~~ 709 (1021)
.+++|+.++|||||+++|+...... +...+..+++++++|.++|+|+..... .+
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~--~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDN--GRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCC--CCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 4678999999999999999744333 334444568999999999999865542 23
Q ss_pred eeCCeEEEEEecCChhhhHHHHHHHhh--hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHH
Q psy5021 710 ESENKHYAHVDCPGHADYIKNMITGAA--QMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLD 787 (1021)
Q Consensus 710 ~~~~~~i~liDtpG~~~~~~~~~~~~~--~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~ 787 (1021)
+..++.++|+|||||++|.+++..++. .+|++++|+|+.+|...++++++.++...++| +++|+||+|+.+ ++.++
T Consensus 80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~D~~~-~~~~~ 157 (224)
T cd04165 80 EKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKIDLAP-ANILQ 157 (224)
T ss_pred eeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECccccC-HHHHH
Confidence 345678999999999999999999986 79999999999999999999999999999999 889999999876 44566
Q ss_pred HHHHHHHHhhhccccC---------------------CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCC
Q psy5021 788 LVEMEIRELLTEYDFD---------------------GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPT 844 (1021)
Q Consensus 788 ~~~~~~~~~l~~~~~~---------------------~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~ 844 (1021)
...+++.++++..+.. ...+|++++||.+| +|++.|++.|.. +|.
T Consensus 158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg-----------~Gi~~L~~~L~~-lp~ 223 (224)
T cd04165 158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTG-----------EGLDLLHAFLNL-LPL 223 (224)
T ss_pred HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCc-----------cCHHHHHHHHHh-cCC
Confidence 6677777777643322 12358999999988 488999988865 653
No 153
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.86 E-value=2.7e-21 Score=201.78 Aligned_cols=169 Identities=38% Similarity=0.518 Sum_probs=135.5
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-------------------
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE------------------- 712 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~------------------- 712 (1021)
.+.|++||.+||||||+.+|++. ..|..+.|.++|.|+......+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~-------------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV-------------WTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDS 67 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-------------CCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccc
Confidence 36799999999999999999752 2477888999999998886665442
Q ss_pred --------C------eEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCC-CcHHHHHHHHHHHHcCCCeEEEEEeec
Q psy5021 713 --------N------KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-PMPQTREHILLARQVGVPNIVVFLNKA 777 (1021)
Q Consensus 713 --------~------~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g-~~~qt~e~l~~~~~~~ip~iIvviNK~ 777 (1021)
+ +.++|||||||++|.+.+..++..+|++++|+|++++ ...++.+++..+...+++++|+++||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 68 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 2 6899999999999999999999999999999999984 567889999888888887799999999
Q ss_pred cccchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC
Q psy5021 778 DCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR 847 (1021)
Q Consensus 778 Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~ 847 (1021)
|+.+.. ......+++.++++.+.. ..++++++||++| +|+++|+++|.+.+|.|+|
T Consensus 148 Dl~~~~-~~~~~~~~i~~~~~~~~~--~~~~i~~vSA~~g-----------~gi~~L~~~l~~~l~~~~~ 203 (203)
T cd01888 148 DLVKEE-QALENYEQIKKFVKGTIA--ENAPIIPISAQLK-----------YNIDVLLEYIVKKIPTPPR 203 (203)
T ss_pred hccCHH-HHHHHHHHHHHHHhcccc--CCCcEEEEeCCCC-----------CCHHHHHHHHHHhCCCCCC
Confidence 998632 233334555555554321 2467999999987 3899999999988877653
No 154
>KOG0459|consensus
Probab=99.86 E-value=3.2e-21 Score=204.31 Aligned_cols=289 Identities=23% Similarity=0.291 Sum_probs=209.5
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccc------------cccc-CCcccccChHHHhhhCceeeeeeeEEEee
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKI------------GEVH-HGTTITDWMQQEQERGITITSASVSIFWE 71 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~------------g~~~-~~~~~~d~~~~e~~rgiTi~~~~~~~~~~ 71 (1021)
...--|+.++||+++||||+-..+++..|.+... ++-. .-++++|+.++|+++|-|+....++|...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 3556799999999999999999999888765431 1100 12678999999999999999999999988
Q ss_pred cccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-------CchhHHHHHHHHhhcCCCEEE-EEeCcCCCC
Q psy5021 72 VNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-------IQPQTETVWFQSQKYKVPKMI-FVNKMDRIG 143 (1021)
Q Consensus 72 ~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-------~~~~t~~~~~~~~~~~~p~ii-viNK~D~~~ 143 (1021)
..++++.|+|||..|..+++.++.+||.+++|++|..| -..||+++...++..++..++ ++||||-+.
T Consensus 156 ----~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 156 ----NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 231 (501)
T ss_pred ----ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCc
Confidence 89999999999999999999999999999999999755 245999999999998887655 599999886
Q ss_pred CCH-HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCH
Q psy5021 144 ANY-NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDE 222 (1021)
Q Consensus 144 ~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~ 222 (1021)
.++ .+-.+++.+++.... +.+-|++
T Consensus 232 vnWs~eRy~E~~~k~~~fL----------------------r~~g~n~-------------------------------- 257 (501)
T KOG0459|consen 232 VNWSNERYEECKEKLQPFL----------------------RKLGFNP-------------------------------- 257 (501)
T ss_pred cCcchhhHHHHHHHHHHHH----------------------HHhcccC--------------------------------
Confidence 653 112222222221000 0000000
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHh--CCCCccccccCCcccccc-CCCceE
Q psy5021 223 FFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEY--LPSPYDVDFKNNDYNINL-NSNKFV 299 (1021)
Q Consensus 223 ~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~--lP~p~~~~~~~~~~~~~~-~~~p~~ 299 (1021)
...-.++| +|..+|.++.+..+.++-+ .|++.+. +..-...++ .++|++
T Consensus 258 -----------------------~~d~~f~p---~sg~tG~~~k~~~~s~cpwy~gp~fl~~--ld~l~~~~R~~~GP~~ 309 (501)
T KOG0459|consen 258 -----------------------KPDKHFVP---VSGLTGANVKDRTDSVCPWYKGPIFLEY--LDELPHLERILNGPIR 309 (501)
T ss_pred -----------------------CCCceeee---cccccccchhhcccccCCcccCCcccee--hhccCcccccCCCCEE
Confidence 00012344 4888888887766633322 2222221 100011223 789999
Q ss_pred EEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--ccccC
Q psy5021 300 SLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK--ESSTG 375 (1021)
Q Consensus 300 ~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~g 375 (1021)
+.|..-+.| .|++.+++|-||+++.||.+...+......|..||. +-.+++++.+|+.+-+ .|++ ++..|
T Consensus 310 ~pI~~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~----ddvE~~~~~pGenvk~rlkgieeedi~~G 383 (501)
T KOG0459|consen 310 CPVANKYKD--MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYS----DDVETDRVAPGENVKLRLKGIEEEDISPG 383 (501)
T ss_pred eehhhhccc--cceEEEEEecccceecCCeEEEccCCcceEEEEEec----ccceeeeccCCcceEEEecccchhhccCc
Confidence 998766654 689999999999999999999999888888888863 2578999999999987 5665 48999
Q ss_pred CeeccCCccc
Q psy5021 376 DTLCSLSENI 385 (1021)
Q Consensus 376 dtl~~~~~~~ 385 (1021)
-+||++.++.
T Consensus 384 fiL~~~~n~~ 393 (501)
T KOG0459|consen 384 FILCSPNNPC 393 (501)
T ss_pred eEEecCCCcc
Confidence 9999987553
No 155
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.85 E-value=1.7e-20 Score=194.85 Aligned_cols=189 Identities=31% Similarity=0.404 Sum_probs=145.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
+++++|++++|||||+++|+..............+.++..+.|+++|+|+......+...+..+.|||||||++|...+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 67899999999999999999643222211111123467778899999999999888988899999999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC--ceEEE
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE--NTKIV 810 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~ii 810 (1021)
.+++.+|++++|+|++++...++..++..+...++| +++|+||+|+.+. +.+...+++.++++.++...+ +++++
T Consensus 84 ~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iv 160 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPDA--RPEEVVDEVFDLFIELGATEEQLDFPVL 160 (194)
T ss_pred HHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECCCCCCC--CHHHHHHHHHHHHHHhCCccccCccCEE
Confidence 999999999999999998888888888877788999 8889999999752 233444555666544443222 46899
Q ss_pred EecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 811 IGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 811 ~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
++||++|.+.... .....++.+|++.|.+++|.|
T Consensus 161 ~~Sa~~g~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 161 YASAKNGWASLNL-EDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred Eeehhcccccccc-ccchhhHHHHHHHHHhcCCCC
Confidence 9999998654322 222457889999999988765
No 156
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.85 E-value=5.4e-21 Score=180.98 Aligned_cols=116 Identities=21% Similarity=0.280 Sum_probs=104.5
Q ss_pred EEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCC----CceEEeccccCCCchhhHHHHHHHHHHHHhcCc
Q psy5021 469 VSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKE----NFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGV 544 (1021)
Q Consensus 469 V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~----~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gp 544 (1021)
|+|||||+++++.+++|++++||++||++|.++++|++ ++. ++.|.+.. ++.+|++|++||++|+++++++||
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~--~~~~~~~~i~~~~~~-~~~~p~~~~~ai~~g~~~al~~Gp 77 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQ--ASSSPVELIELANSA-IEVLLKRIQEAVENGVHSALLQGP 77 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECC--CCCCCCceeEecCcc-CCcChHHHHHHHHHHHHHHHHcCC
Confidence 68999999998877899999999999999999999997 444 56776555 788999999999999999999999
Q ss_pred ccccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcC
Q psy5021 545 VLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKAN 588 (1021)
Q Consensus 545 l~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 588 (1021)
|+||||+||+|+|.++.+|+++|++..+ .|++.|+++||.+|+
T Consensus 78 l~G~pv~~v~V~l~~~~~~~~~s~~~~~-~Aa~~a~~~al~~a~ 120 (120)
T cd01693 78 LLGFPVQDVAITLHSLTIGPGTSPTMIS-ACASQCVQKALKSAG 120 (120)
T ss_pred ccCCceeeEEEEEEeCCcCCCCCHHHHH-HHHHHHHHHHHHhcc
Confidence 9999999999999999999887776665 889999999998874
No 157
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.85 E-value=6e-20 Score=189.86 Aligned_cols=188 Identities=39% Similarity=0.642 Sum_probs=148.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
||+++|.+|+|||||+++|+...........+ ....+++...|..+|+|+......+.+. +..++||||||+.+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~liDtpG~~~ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTV--EETFLDVLKEERERGITIKSGVATFEWP----DRRVNFIDTPGHED 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCce--ecccccCCHHHHHcCCCeecceEEEeeC----CEEEEEEeCCCcHH
Confidence 68999999999999999998776554332211 1256788889999999999888888887 88999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC-CCHHHHHHHHHHHhCCceeeeeeec
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG-ANYNNCIIDIKKKFNCIVLPINFNI 168 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~-~~~~~~~~~i~~~l~~~~~~~~~p~ 168 (1021)
|...+..+++.+|++++|+|+.++...+..+.+..+...++|+++++||+|+.. .+.....+++.+.++....
T Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~------ 148 (189)
T cd00881 75 FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGF------ 148 (189)
T ss_pred HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccc------
Confidence 999999999999999999999999988889998888888999999999999975 4455555555555432100
Q ss_pred ccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q psy5021 169 GIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLVLK 248 (1021)
Q Consensus 169 ~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~~~~ 248 (1021)
...+ .+....
T Consensus 149 -----------------------------------------------------------------~~~~-----~~~~~~ 158 (189)
T cd00881 149 -----------------------------------------------------------------ISTK-----EEGTRN 158 (189)
T ss_pred -----------------------------------------------------------------cchh-----hhhccc
Confidence 0000 011112
Q ss_pred CceeEEEeccccCcccHHHHHHHHHHhCCCC
Q psy5021 249 NKIIPIMCGSSLKNKGIEFLLNSICEYLPSP 279 (1021)
Q Consensus 249 ~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p 279 (1021)
....|++.+||++|.|++++++.+.+.+|.|
T Consensus 159 ~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~~ 189 (189)
T cd00881 159 GLLVPIVPGSALTGIGVEELLEAIVEHLPPP 189 (189)
T ss_pred CCcceEEEEecccCcCHHHHHHHHHhhCCCC
Confidence 3457899999999999999999999999865
No 158
>KOG0465|consensus
Probab=99.85 E-value=8.6e-21 Score=210.63 Aligned_cols=266 Identities=24% Similarity=0.368 Sum_probs=199.2
Q ss_pred ceeeeeeeeeccchhhhhhhcccccccc---ccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIY---GGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~---~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
-.+|+..|.++||||+..+++...+.+. ..... .+.||....|+++|+|+.....++.|.+.++++||||||-+|.
T Consensus 40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~-~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG-GATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred cccceEEEEecCCceeeheeeeecceeeeccccccC-ceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 4679999999999999999875443322 11111 3468999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchh--hHHHHHHHH--------------
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDK--ELLDLVEME-------------- 792 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~--~~~~~~~~~-------------- 792 (1021)
-...++++.-|+|++|+|+..|+..||...|..+++.++| -|..+||||..... ..++.+...
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP-~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiPig~ 197 (721)
T KOG0465|consen 119 FEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVP-RICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIPIGS 197 (721)
T ss_pred EEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCC-eEEEEehhhhcCCChHHHHHHHHhhcCCchheeEccccc
Confidence 9999999999999999999999999999999999999999 56688999976411 011111000
Q ss_pred -----------------------------------------------------------------------HHHhhhccc
Q psy5021 793 -----------------------------------------------------------------------IRELLTEYD 801 (1021)
Q Consensus 793 -----------------------------------------------------------------------~~~~l~~~~ 801 (1021)
+....++.-
T Consensus 198 e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr~T 277 (721)
T KOG0465|consen 198 ESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIRRAT 277 (721)
T ss_pred cccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 001111111
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCC--------------------CCC-CeeEEEEEE
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRI--------------------TDK-PFLMPIEDV 860 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~--------------------~~~-p~~~~I~~~ 860 (1021)
.....+|++..||+.+. ++..||+++.+++|.|... .++ ||......+
T Consensus 278 i~r~fvPVl~GSAlKNk-----------GVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKl 346 (721)
T KOG0465|consen 278 IKRSFVPVLCGSALKNK-----------GVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKL 346 (721)
T ss_pred hhcceeeEEechhhccc-----------CcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEe
Confidence 11223678888988763 7888999999999877421 122 666666666
Q ss_pred EeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecc----cccceeccCceEEEEecccCccCcccceEEe
Q psy5021 861 FSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK----KTLDEGLAGENVGILLRSVKREEVERGQVLA 936 (1021)
Q Consensus 861 ~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~----~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~ 936 (1021)
..-+. |...+-+|++|+|++||.++-.- ...++++-.+...| ++++++.|||++.+. |+ +...||++.
T Consensus 347 e~g~f-GqLTyvRvYqG~L~kG~~iyN~r--tgKKvrv~RL~rmHa~~medV~~v~AG~I~alf--Gi---dcasGDTft 418 (721)
T KOG0465|consen 347 EEGRF-GQLTYVRVYQGTLSKGDTIYNVR--TGKKVRVGRLVRMHANDMEDVNEVLAGDICALF--GI---DCASGDTFT 418 (721)
T ss_pred eecCc-cceEEEEEeeeeecCCcEEEecC--CCceeEhHHHhHhcccccchhhhhhccceeeee--cc---ccccCceec
Confidence 55444 88899999999999999998763 34456666555443 589999999998765 43 677899888
Q ss_pred eC
Q psy5021 937 KI 938 (1021)
Q Consensus 937 ~~ 938 (1021)
+.
T Consensus 419 d~ 420 (721)
T KOG0465|consen 419 DK 420 (721)
T ss_pred cC
Confidence 65
No 159
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.84 E-value=4.4e-20 Score=191.34 Aligned_cols=170 Identities=32% Similarity=0.517 Sum_probs=134.5
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC--------------CeEEEE
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE--------------NKHYAH 718 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~--------------~~~i~l 718 (1021)
.+++.|++++|||||+++|+... ..+.+++..+|.++|+|++.....+.+. +..++|
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~---------~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIA---------STAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITL 72 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhcc---------chhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEE
Confidence 57899999999999999999742 1124588889999999999887776654 678999
Q ss_pred EecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhh---HHHHHHHHHHH
Q psy5021 719 VDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKE---LLDLVEMEIRE 795 (1021)
Q Consensus 719 iDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~---~~~~~~~~~~~ 795 (1021)
||||||.+|.+.+..++..+|++++|+|+.++...++.+++..+...++| +++++||+|+..... ..+.+.+++..
T Consensus 73 ~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~ 151 (192)
T cd01889 73 VDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKK-LIVVLNKIDLIPEEERERKIEKMKKKLQK 151 (192)
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECcccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998888999999999999999888888888877778887 889999999975222 12333333333
Q ss_pred hhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 796 LLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 796 ~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
.+..+++ ..++++++||++| .|+++|+++|.+.++.|
T Consensus 152 ~~~~~~~--~~~~vi~iSa~~g-----------~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 152 TLEKTRF--KNSPIIPVSAKPG-----------GGEAELGKDLNNLIVLP 188 (192)
T ss_pred HHHhcCc--CCCCEEEEeccCC-----------CCHHHHHHHHHhccccc
Confidence 3333333 2468999999988 48999999999888755
No 160
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=99.83 E-value=2.8e-20 Score=186.42 Aligned_cols=129 Identities=17% Similarity=0.275 Sum_probs=104.6
Q ss_pred CCeEEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCC-------------------------------------
Q psy5021 466 KPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLE------------------------------------- 508 (1021)
Q Consensus 466 ~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~------------------------------------- 508 (1021)
+|.|+|||||.+.+.... ..+... ...++.+.++|++++
T Consensus 1 ~P~V~f~ETv~~~s~~~~-~~ks~n---k~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~i 76 (178)
T cd01683 1 DPVVTFCETVVETSSAKC-FAETPN---KKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSI 76 (178)
T ss_pred CCcceEEeeccccCCCce-eeECCC---cccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCe
Confidence 699999999988764211 112211 135889999999741
Q ss_pred ------CCCCceEEeccccCC----CchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeecc--CCCCHHHHHHHH
Q psy5021 509 ------NKENFIFKSEIIGGS----IPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHS--VDSSEYAFKNAA 576 (1021)
Q Consensus 509 ------~~~~~~f~~~~~~~~----~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~~~~a~ 576 (1021)
+..+|.|.|.+.+.. +..+++++|++||++|+++||||||||+||+|+|.|+.+|+ .++++++|+.|+
T Consensus 77 w~fgP~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi~~aa 156 (178)
T cd01683 77 WAFGPDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQIIPTA 156 (178)
T ss_pred EEEcCCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHHHHHH
Confidence 012477888766443 34678999999999999999999999999999999999998 788999999999
Q ss_pred HHHHHHHHHhcCcceeeeeEEE
Q psy5021 577 AIALKDALKKANSYILEPIMKV 598 (1021)
Q Consensus 577 ~~a~~~a~~~a~~~llEP~~~~ 598 (1021)
++||++|+++|+|+||||||.|
T Consensus 157 r~a~~~a~l~a~prLLEPim~v 178 (178)
T cd01683 157 RRACYSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHHHHHCCCEEEcceEeC
Confidence 9999999999999999999975
No 161
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.83 E-value=1.3e-19 Score=192.60 Aligned_cols=128 Identities=38% Similarity=0.550 Sum_probs=112.5
Q ss_pred eeeeeeeeeccchhhhhhhccccccccc-c-ccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYG-G-EVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~-~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
+++++||+++|||||+++|+.....+.. + .....+++|..+.|+++|+|+......+++++.+++|||||||.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4688999999999999999876544332 1 1123356789999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
+..+++.+|++++|+|+.+|...++++++..+...++| +++++||+|+.+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P-~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIP-TIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccccC
Confidence 99999999999999999999999999999999999999 778999999874
No 162
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.83 E-value=6.5e-20 Score=198.16 Aligned_cols=158 Identities=29% Similarity=0.323 Sum_probs=129.2
Q ss_pred eeeeeeeeeccchhhhhhhccccccccc--cccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYG--GEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~--~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
+++++||+|+|||||+++|+...+.+.. ......+.+|..++|+++|+|++.....+++++.+++|||||||.+|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 4689999999999999999864433221 11123457899999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEE
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIV 810 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii 810 (1021)
+..+++.+|++|+|||+.+|...++.+++..+...++| +++++||+|+.+.. ++...+++++.+....+ ..++
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~a~--~~~~~~~l~~~l~~~~~----~~~~ 153 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVP-RIAFVNKMDRTGAD--FFRVVEQIREKLGANPV----PLQL 153 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--HHHHHHHHHHHhCCCce----EEEe
Confidence 99999999999999999999999999999999999999 77899999987522 34455566666543322 3478
Q ss_pred Eeccccc
Q psy5021 811 IGSALLA 817 (1021)
Q Consensus 811 ~iSa~~~ 817 (1021)
|+|+..+
T Consensus 154 Pisa~~~ 160 (270)
T cd01886 154 PIGEEDD 160 (270)
T ss_pred ccccCCC
Confidence 9998754
No 163
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.82 E-value=1.6e-20 Score=160.06 Aligned_cols=75 Identities=47% Similarity=0.762 Sum_probs=70.7
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeC
Q psy5021 392 TPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISK 466 (1021)
Q Consensus 392 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~ 466 (1021)
||+|+++++|+|.++.|.++|.+||++|++|||+|++.+|++|||++|+||||+||||+++||+++||+++++++
T Consensus 1 ~p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~~~~ 75 (75)
T PF14492_consen 1 FPPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVEFGK 75 (75)
T ss_dssp SSS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEEEE-
T ss_pred CCCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeEecC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999874
No 164
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.82 E-value=2.9e-19 Score=180.16 Aligned_cols=162 Identities=44% Similarity=0.638 Sum_probs=126.3
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-CeEEEEEecCChhhhHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-NKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-~~~i~liDtpG~~~~~~~ 730 (1021)
++++++|.+++|||||+++|++.. .+....+..+++|++.....+... +..+.+|||||+++|...
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~-------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~ 67 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIE-------------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKN 67 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcc-------------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHH
Confidence 357899999999999999998632 133445666788888887777766 778999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEE
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIV 810 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii 810 (1021)
+..+++.+|++++|+|++++...++.+++..+...+.+++++++||+|+.+.. ......+++.+.++..+. ...+++
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~ 144 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDED-WLELVEEEIRELLAGTFL--ADAPIF 144 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHH-HHHHHHHHHHHHHHhcCc--CCCcEE
Confidence 99999999999999999988888888888877777874499999999997632 233334455555554322 236899
Q ss_pred EecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 811 IGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 811 ~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++||+++ +|++++++.+..
T Consensus 145 ~~Sa~~~-----------~~v~~l~~~l~~ 163 (164)
T cd04171 145 PVSAVTG-----------EGIEELKEYLDE 163 (164)
T ss_pred EEeCCCC-----------cCHHHHHHHHhh
Confidence 9999987 488888888753
No 165
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.82 E-value=2.2e-19 Score=184.03 Aligned_cols=173 Identities=28% Similarity=0.437 Sum_probs=132.7
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee-----CCeEEEEEecCChhhh
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES-----ENKHYAHVDCPGHADY 727 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~-----~~~~i~liDtpG~~~~ 727 (1021)
+++.+|++++|||||+++|++....+.... ...++++....|+++|+|.......+.+ .+..+.|||||||.+|
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKRE-MKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCC-CceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 468899999999999999998654333221 1234578888999999999877665533 4567889999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
...+..+++.+|++|+|+|++++...++.+++..+...++| +++|+||+|+.+.. .....+++.+. +++. ..
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~--~~~~~~~~~~~---~~~~--~~ 152 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLE-IIPVINKIDLPSAD--PERVKQQIEDV---LGLD--PS 152 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCC-EEEEEECCCCCcCC--HHHHHHHHHHH---hCCC--cc
Confidence 99999999999999999999998888888888777778888 89999999986421 22222333333 3331 13
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
.++++||++| +|+++|+++|.+.+|.|
T Consensus 153 ~~~~~Sa~~g-----------~gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 153 EAILVSAKTG-----------LGVEDLLEAIVERIPPP 179 (179)
T ss_pred cEEEeeccCC-----------CCHHHHHHHHHhhCCCC
Confidence 5899999987 48999999998877654
No 166
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.80 E-value=1.4e-18 Score=179.52 Aligned_cols=179 Identities=42% Similarity=0.616 Sum_probs=144.0
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
+++++|.+++|||||+|+|++.............+.++....+..+|+|++.....++..+..+.||||||+.+|...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 46789999999999999999865444333333224567778889999999988888888889999999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc---------C
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF---------D 803 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~---------~ 803 (1021)
.++..+|++++|+|+.++...+..+++..+...+.| +++++||+|+.. +.......+++.+.++..+. .
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDRVG-EEDLEEVLREIKELLGLIGFISTKEEGTRN 158 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCCCcc-hhcHHHHHHHHHHHHccccccchhhhhccc
Confidence 999999999999999998888888888888887888 999999999986 22344455666666665543 2
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPT 844 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~ 844 (1021)
....+++++||++|. |+++++++|.+.+|.
T Consensus 159 ~~~~~v~~~Sa~~g~-----------gi~~l~~~l~~~l~~ 188 (189)
T cd00881 159 GLLVPIVPGSALTGI-----------GVEELLEAIVEHLPP 188 (189)
T ss_pred CCcceEEEEecccCc-----------CHHHHHHHHHhhCCC
Confidence 345789999999873 899999999887764
No 167
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.80 E-value=7.3e-19 Score=185.14 Aligned_cols=189 Identities=25% Similarity=0.384 Sum_probs=139.7
Q ss_pred eeeeeeeeeccchhhhhhhcccccccc---ccccccccccCCchhhhhcCceEeeeEEEEeeC-----CeEEEEEecCCh
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIY---GGEVRAFDTIDNAPEEKERGITISTSHVEYESE-----NKHYAHVDCPGH 724 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~---~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-----~~~i~liDtpG~ 724 (1021)
+.+++|++++|||||+++|+....... .......++++....|+++|+|+......+.+. ...+++||||||
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 467899999999999999997654443 222333456799999999999998887776543 367899999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecccc-------c--hhhHHHHHHHHHHH
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCV-------Q--DKELLDLVEMEIRE 795 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~-------~--~~~~~~~~~~~~~~ 795 (1021)
.+|...+..++..+|++++|+|+.++...++.+++..+...++| +++++||+|++ . ..+++.++.+++..
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~ 160 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN 160 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888888888778888 88999999986 1 12456667777888
Q ss_pred hhhccccCC------CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 796 LLTEYDFDG------ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 796 ~l~~~~~~~------~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
+++.+++.. .+..++..|++.++.-+- . .-.....|++.|.+.+|.|
T Consensus 161 ~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~-~--~~~~~~~~~~~~~~~~~~~ 213 (213)
T cd04167 161 IIASFSTTLSFLFSPENGNVCFASSKFGFCFTL-E--SFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHhcCCCceEeccCCCeEEEEecCCCeEEec-H--HHHhhhhHHHHHHhhCCCC
Confidence 887776633 122355567765532110 0 0123446888887766654
No 168
>KOG1144|consensus
Probab=99.80 E-value=1.7e-19 Score=202.75 Aligned_cols=248 Identities=27% Similarity=0.374 Sum_probs=179.3
Q ss_pred CCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe--------------
Q psy5021 645 YSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE-------------- 710 (1021)
Q Consensus 645 ~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~-------------- 710 (1021)
-..+|||..+.+.||++.|||-|+..|.+.+. .+....|+|..+...+|.
T Consensus 469 ~~~~lRSPIcCilGHVDTGKTKlld~ir~tNV----------------qegeaggitqqIgAt~fp~~ni~e~tk~~~~~ 532 (1064)
T KOG1144|consen 469 STENLRSPICCILGHVDTGKTKLLDKIRGTNV----------------QEGEAGGITQQIGATYFPAENIREKTKELKKD 532 (1064)
T ss_pred cchhcCCceEEEeecccccchHHHHHhhcccc----------------ccccccceeeeccccccchHHHHHHHHHHHhh
Confidence 45689999999999999999999999987321 222334666655554442
Q ss_pred ----eCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-h---
Q psy5021 711 ----SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-D--- 782 (1021)
Q Consensus 711 ----~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~--- 782 (1021)
..--.+.+||||||+.|.....+|.+.||+||||||..+|+.+||.|.+.+++..+.| +||++||+|... |
T Consensus 533 ~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktp-FivALNKiDRLYgwk~~ 611 (1064)
T KOG1144|consen 533 AKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTP-FIVALNKIDRLYGWKSC 611 (1064)
T ss_pred hhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCC-eEEeehhhhhhcccccC
Confidence 1223578999999999999999999999999999999999999999999999999999 999999999652 2
Q ss_pred --hhHHHH-------HHHHHHHhhh-------ccccC----------CCceEEEEecccccccCCCCCccCcchHHHHHH
Q psy5021 783 --KELLDL-------VEMEIRELLT-------EYDFD----------GENTKIVIGSALLALEGKDDNQLGTTSIKKLLD 836 (1021)
Q Consensus 783 --~~~~~~-------~~~~~~~~l~-------~~~~~----------~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~ 836 (1021)
...++. +.+++...+. .-|++ ...+.++|+||.+| +|+++|+-
T Consensus 612 p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sG-----------eGipdLl~ 680 (1064)
T KOG1144|consen 612 PNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISG-----------EGIPDLLL 680 (1064)
T ss_pred CCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccC-----------CCcHHHHH
Confidence 111111 1111111111 11211 13478999999988 48899888
Q ss_pred hhhccCCCC---CCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCe-------------e-EEEEE
Q psy5021 837 VLDSSIPTP---NRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQT-------------I-KTTIT 899 (1021)
Q Consensus 837 ~l~~~l~~~---~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~-------------~-~~~Vk 899 (1021)
+|.+..... +-..-..++..|.++-.+.|.|+.+-..+..|.|+.||.+.++..+.. + .-+|+
T Consensus 681 llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk 760 (1064)
T KOG1144|consen 681 LLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVK 760 (1064)
T ss_pred HHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccc
Confidence 887633211 111234678999999999999999999999999999999998754321 1 24677
Q ss_pred EEEeccc-------------ccceeccCceEEEE
Q psy5021 900 GIEMFKK-------------TLDEGLAGENVGIL 920 (1021)
Q Consensus 900 si~~~~~-------------~~~~a~~G~~v~l~ 920 (1021)
+-++|+. .++.|.+|-.+-+.
T Consensus 761 ~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~Vv 794 (1064)
T KOG1144|consen 761 GTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLVV 794 (1064)
T ss_pred cceeehhHhhhhccchhhhcchHHHhcCCeeEEe
Confidence 7777764 44567777766554
No 169
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.79 E-value=1.8e-18 Score=186.86 Aligned_cols=129 Identities=36% Similarity=0.517 Sum_probs=112.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccc-ccc-----ccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYG-GEV-----RAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA 725 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~~-----~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~ 725 (1021)
-+++++||+|+|||||+++|+.....+.. +.. ...+++|..+.|+++|+|+......+++.+..++|||||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 35789999999999999999865444332 111 244567999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 726 DYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 726 ~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
+|...+..+++.+|++|+|+|++.+...++..++..+...++| +++++||+|+.+
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P-~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP-IITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCC-EEEEEECCccCC
Confidence 9999999999999999999999999989999999988888999 888999999865
No 170
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.79 E-value=6.8e-19 Score=178.22 Aligned_cols=128 Identities=20% Similarity=0.246 Sum_probs=103.9
Q ss_pred CCeEEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCC-------------------------------------
Q psy5021 466 KPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLE------------------------------------- 508 (1021)
Q Consensus 466 ~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~------------------------------------- 508 (1021)
+|.|+||||+.+.+.. .....+. ++ ..++.++++|++.+
T Consensus 1 ~PiV~frETi~~~~~~--~~~~~s~-n~-~~~i~~~a~PLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~I 76 (177)
T cd01681 1 DPVVSFRETVVETSSG--TCLAKSP-NK-HNRLYMRAEPLPEELIEDIEKGKITLKDDKKKRARILLDKYGWDKLAARKI 76 (177)
T ss_pred CCCCCEeeecccCCCc--cEEEEcC-Cc-ceEEEEEEecCCHHHHHHHHcCCCCcchhHHHHHHHHHHHcCCCHHHhCcE
Confidence 5999999999887642 1111111 11 35788999998641
Q ss_pred ------CCCCceEEeccccCCC----chhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeeccC--CCCHHHHHHHH
Q psy5021 509 ------NKENFIFKSEIIGGSI----PKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSV--DSSEYAFKNAA 576 (1021)
Q Consensus 509 ------~~~~~~f~~~~~~~~~----~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~--~s~~~~~~~a~ 576 (1021)
+..+|.|.|.+.+... +++|+++|++||++|+++||||||||+||+|+|.++.+|+. ++++++|..|+
T Consensus 77 w~fGP~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~~~a~ 156 (177)
T cd01681 77 WAFGPDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQIIPAA 156 (177)
T ss_pred EEECCCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhHHHHH
Confidence 1134777776655444 78999999999999999999999999999999999999986 78889999999
Q ss_pred HHHHHHHHHhcCcceeeeeEE
Q psy5021 577 AIALKDALKKANSYILEPIMK 597 (1021)
Q Consensus 577 ~~a~~~a~~~a~~~llEP~~~ 597 (1021)
++||++|+++|+|+||||||.
T Consensus 157 r~a~~~a~~~a~p~LlEPi~~ 177 (177)
T cd01681 157 RRACYAAFLLASPRLMEPMYL 177 (177)
T ss_pred HHHHHHHHhhCCCEEEccccC
Confidence 999999999999999999984
No 171
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.78 E-value=2.6e-18 Score=173.13 Aligned_cols=116 Identities=27% Similarity=0.369 Sum_probs=95.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
||+++|++|+|||||+++|.... .+..+.|..+++|+......+.+.. ++.+++|||||+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~---------------~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~DtpG~~~ 63 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE---------------TDRLPEEKKRGITIDLGFAYLDLPS---GKRLGFIDVPGHEK 63 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc---------------cccchhhhccCceEEeeeEEEEecC---CcEEEEEECCChHH
Confidence 79999999999999999995211 1233456677888887766665542 56899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCC-CEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV-PKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~-p~iiviNK~D~~~ 143 (1021)
|...+..+++.+|++++|+|++++...++...+..+...+. |+++++||+|+..
T Consensus 64 ~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 64 FIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVD 118 (164)
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccC
Confidence 99889999999999999999999888888887777666666 9999999999864
No 172
>KOG0463|consensus
Probab=99.77 E-value=2.9e-18 Score=179.30 Aligned_cols=284 Identities=19% Similarity=0.265 Sum_probs=206.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCC----cccccChHHHhhhCceeeeee-------------------e
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHG----TTITDWMQQEQERGITITSAS-------------------V 66 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~----~~~~d~~~~e~~rgiTi~~~~-------------------~ 66 (1021)
.|+++|.+|+|||||+..|. .|+++.| .+.+-.+++|.|.|-|..... .
T Consensus 135 RVAVVGNVDAGKSTLLGVLT--------HgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~ 206 (641)
T KOG0463|consen 135 RVAVVGNVDAGKSTLLGVLT--------HGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGH 206 (641)
T ss_pred EEEEEecccCCcceeEeeee--------ecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCC
Confidence 58999999999999999884 2444443 223445667777776643221 1
Q ss_pred EEEeec--ccCceeEEEEcCCCCCCcHHHHHHHhh--ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 67 SIFWEV--NKFKYMINIIDTPGHVDFTIEVERSLR--VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 67 ~~~~~~--~~~~~~i~liDtPG~~~f~~~~~~~l~--~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
++.|-. ++....|+|||.+||..|.+.+..++. ..|...++|.++.|+...|.+++..+...++|+++|++|+|..
T Consensus 207 ~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 207 NLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMC 286 (641)
T ss_pred cccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccC
Confidence 233332 223457999999999999999988884 6799999999999999999999999999999999999999998
Q ss_pred CCC-HHHHHHHHHHHhC---CceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhc
Q psy5021 143 GAN-YNNCIIDIKKKFN---CIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLS 218 (1021)
Q Consensus 143 ~~~-~~~~~~~i~~~l~---~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~ 218 (1021)
.++ +++.+.-+.+.+. +.-+|+.+- +-+ .... ....
T Consensus 287 PANiLqEtmKll~rllkS~gcrK~PvlVr--s~D------------DVv~-----~A~N--------------------- 326 (641)
T KOG0463|consen 287 PANILQETMKLLTRLLKSPGCRKLPVLVR--SMD------------DVVH-----AAVN--------------------- 326 (641)
T ss_pred cHHHHHHHHHHHHHHhcCCCcccCcEEEe--ccc------------ceEE-----eecc---------------------
Confidence 777 4666776766663 232222110 000 0000 0000
Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCce
Q psy5021 219 NNDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKF 298 (1021)
Q Consensus 219 ~~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~ 298 (1021)
+...+.+|+|-+|..+|.++ +||.++.+.+|.-.... .+.|.
T Consensus 327 ---------------------------F~Ser~CPIFQvSNVtG~NL-~LLkmFLNlls~R~~~~----------E~~PA 368 (641)
T KOG0463|consen 327 ---------------------------FPSERVCPIFQVSNVTGTNL-PLLKMFLNLLSLRRQLN----------ENDPA 368 (641)
T ss_pred ---------------------------CccccccceEEeccccCCCh-HHHHHHHhhcCcccccc----------cCCCc
Confidence 11236799999999999998 78888888887544321 56788
Q ss_pred EEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCc----eeeEeceEEEeecCCeeccccccCCCEEEE--ecCC--
Q psy5021 299 VSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKK----VKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK-- 370 (1021)
Q Consensus 299 ~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~----~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~-- 370 (1021)
-..+..+|+.|++|+++-+..++|+++.+|.+...++. ....|+.| .+++.||..+.+|+...+ .+++
T Consensus 369 eFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSI----HRKRMpV~~VrcGQtASFALKKIkr~ 444 (641)
T KOG0463|consen 369 EFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSI----HRKRMPVGIVRCGQTASFALKKIKRK 444 (641)
T ss_pred ceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhh----hhccccceEEeccchhhhHhhhcchh
Confidence 88999999999999999999999999999999865442 23445554 366789999999998776 3443
Q ss_pred ccccCCeeccCCc
Q psy5021 371 ESSTGDTLCSLSE 383 (1021)
Q Consensus 371 ~~~~gdtl~~~~~ 383 (1021)
++++|..+.+++-
T Consensus 445 ~vRKGMVmVsp~l 457 (641)
T KOG0463|consen 445 DVRKGMVMVSPKL 457 (641)
T ss_pred hhhcceEEecCCC
Confidence 4789999888653
No 173
>KOG1144|consensus
Probab=99.76 E-value=3.1e-18 Score=192.77 Aligned_cols=241 Identities=21% Similarity=0.191 Sum_probs=152.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec----------c----c
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV----------N----K 74 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~----------~----~ 74 (1021)
.-+||+||+|+|||-|++.+...+-.-.. ..|||-+-.+..|.... + -
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqege------------------aggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~ 537 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGE------------------AGGITQQIGATYFPAENIREKTKELKKDAKKRL 537 (1064)
T ss_pred ceEEEeecccccchHHHHHhhcccccccc------------------ccceeeeccccccchHHHHHHHHHHHhhhhhhc
Confidence 45899999999999999999543222222 22444443333333221 0 0
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHH
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIK 154 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~ 154 (1021)
.-..+.+||||||..|+....++...||.||+|||..+|+++||.+-++.++..+.|+|+++||+||.-
T Consensus 538 kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLY----------- 606 (1064)
T KOG1144|consen 538 KVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLY----------- 606 (1064)
T ss_pred CCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhc-----------
Confidence 123588999999999999999999999999999999999999999999999999999999999999851
Q ss_pred HHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhh----HHHHHHHHHHHHHHhcCCCHHHHHHHHc
Q psy5021 155 KKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQ----LSAFDYYNELMLETLSNNDEFFLEKYIN 230 (1021)
Q Consensus 155 ~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~e~~~~~d~~l~e~~l~ 230 (1021)
-|.. ....++.+.+ .+...+|..++-..+.++. |+-|+
T Consensus 607 --------------------------------gwk~--~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efa----EQgLN 648 (1064)
T KOG1144|consen 607 --------------------------------GWKS--CPNAPIVEALKKQKKDVQNEFKERLNNIIVEFA----EQGLN 648 (1064)
T ss_pred --------------------------------cccc--CCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHH----Hcccc
Confidence 0100 0000000000 1122233333333222211 11111
Q ss_pred CCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCC
Q psy5021 231 NNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPF 310 (1021)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~ 310 (1021)
..-.+ +.--.+.++-++++||.+|.||..||-+|+++...-... .+. --..+.+.|..+-..++
T Consensus 649 ----~~Lyy----kNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~-------kl~-y~~ev~cTVlEVKvieG 712 (1064)
T KOG1144|consen 649 ----AELYY----KNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE-------KLA-YVDEVQCTVLEVKVIEG 712 (1064)
T ss_pred ----hhhee----ecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH-------HHh-hhhheeeEEEEEEeecC
Confidence 11100 001135678889999999999999999998765322110 000 22345666777777777
Q ss_pred CceEEEEEEEeeEEecCCEEEe
Q psy5021 311 LGSLSFIRIYSGFIKVGDLVYN 332 (1021)
Q Consensus 311 ~g~~~~~RV~sG~l~~gd~v~~ 332 (1021)
.|...-+-+..|.|+.||.+..
T Consensus 713 ~GtTIDViLvNG~L~eGD~Ivv 734 (1064)
T KOG1144|consen 713 HGTTIDVILVNGELHEGDQIVV 734 (1064)
T ss_pred CCceEEEEEEcceeccCCEEEE
Confidence 7877777677777777776654
No 174
>KOG1143|consensus
Probab=99.75 E-value=2.3e-17 Score=172.61 Aligned_cols=287 Identities=19% Similarity=0.255 Sum_probs=204.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCc----ccccChHHHhhhCceeeeeeeEEEeec-------------
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGT----TITDWMQQEQERGITITSASVSIFWEV------------- 72 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~----~~~d~~~~e~~rgiTi~~~~~~~~~~~------------- 72 (1021)
.+|++|..|+|||||+..|. .|++++|. .-+-.+++|.+.|-|...+.-.+-|+.
T Consensus 169 RvAVlGg~D~GKSTLlGVLT--------QgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~ta 240 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLT--------QGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTA 240 (591)
T ss_pred EEEEecCcccCcceeeeeee--------cccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccH
Confidence 58999999999999999884 34555541 123456888888877554433333332
Q ss_pred ----ccCceeEEEEcCCCCCCcHHHHHHHhhc--cCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC-C
Q psy5021 73 ----NKFKYMINIIDTPGHVDFTIEVERSLRV--LDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA-N 145 (1021)
Q Consensus 73 ----~~~~~~i~liDtPG~~~f~~~~~~~l~~--~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~-~ 145 (1021)
+.....++|||.+||..|...+..++.. .|.|++||+|..|+...|++++-.+...++|++++++|||+... .
T Consensus 241 EEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 241 EEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred HHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchh
Confidence 1345689999999999999999998864 69999999999999999999999999999999999999999754 3
Q ss_pred HHHHHHHHHHHhC---CceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCH
Q psy5021 146 YNNCIIDIKKKFN---CIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDE 222 (1021)
Q Consensus 146 ~~~~~~~i~~~l~---~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~ 222 (1021)
.++++.++.+.+. +..+|..+.
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt------------------------------------------------------- 345 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVT------------------------------------------------------- 345 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEee-------------------------------------------------------
Confidence 6888888887763 332222110
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEE
Q psy5021 223 FFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLV 302 (1021)
Q Consensus 223 ~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V 302 (1021)
+.++..++..+ ...++++|+|+.|+.+|.|++ |+..+...||+-.... +.......|.-..|
T Consensus 346 -----------~~ddAv~Aaq~-~~s~nivPif~vSsVsGegl~-ll~~fLn~Lsp~~~~~-----e~~~L~q~~~eFqv 407 (591)
T KOG1143|consen 346 -----------TKDDAVKAAQE-LCSGNIVPIFAVSSVSGEGLR-LLRTFLNCLSPAGTAE-----ERIQLVQLPAEFQV 407 (591)
T ss_pred -----------chHHHHHHHHH-hccCCceeEEEEeecCccchh-HHHHHHhhcCCcCChH-----HHHHHhcCcceeeH
Confidence 12232333333 456789999999999999995 4555555665433211 00111334566678
Q ss_pred EEEeecCCCceEEEEEEEeeEEecCCEEEeCCCc----eeeEeceEEEeecCCeeccccccCCCEEEEe-cCC---cccc
Q psy5021 303 FKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKK----VKEKIFRILRMFANSKKDINDAHFGDIVVIV-GLK---ESST 374 (1021)
Q Consensus 303 ~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~----~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-gl~---~~~~ 374 (1021)
..+|..|.+|.+.-+-.-+|.++.|+.+.+.+.. .+.++..|. +++.++..+.||+-..+. +.. .++.
T Consensus 408 dEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~----Rnr~acrvvraGqaAslsl~d~D~~~LR~ 483 (591)
T KOG1143|consen 408 DEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIR----RNRQACRVVRAGQAASLSLNDPDGVSLRR 483 (591)
T ss_pred hHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeee----ccccceeeecCccceeeeccCCCccchhc
Confidence 8899999999999999999999999999875432 345666664 456778889999987774 211 2566
Q ss_pred CCeeccC
Q psy5021 375 GDTLCSL 381 (1021)
Q Consensus 375 gdtl~~~ 381 (1021)
|..+...
T Consensus 484 GMVl~~~ 490 (591)
T KOG1143|consen 484 GMVLAEI 490 (591)
T ss_pred ceEEeec
Confidence 7666554
No 175
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.74 E-value=1.5e-17 Score=202.68 Aligned_cols=239 Identities=15% Similarity=0.188 Sum_probs=170.2
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
..+|+++||+|+|||||+|+|.. ...+.|+ ..|.|++.....+.+. ++.++++||||+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg---~~~~vgn---------------~pGvTve~k~g~~~~~----~~~i~lvDtPG~ 60 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTG---ARQRVGN---------------WAGVTVERKEGQFSTT----DHQVTLVDLPGT 60 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhC---CCCccCC---------------CCCceEeeEEEEEEcC----ceEEEEEECCCc
Confidence 35799999999999999999953 2222222 2577888777777777 889999999999
Q ss_pred CCcHHH----------HHHHh--hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC-CCHHHHHHHHH
Q psy5021 88 VDFTIE----------VERSL--RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG-ANYNNCIIDIK 154 (1021)
Q Consensus 88 ~~f~~~----------~~~~l--~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~-~~~~~~~~~i~ 154 (1021)
.+|... ...++ ..+|++++|+|+++... ...++.++.+.++|+++++||+|+.. .......+++.
T Consensus 61 ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~ 138 (772)
T PRK09554 61 YSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALS 138 (772)
T ss_pred cccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHH
Confidence 888532 11232 37899999999988533 34567788889999999999999863 34556678888
Q ss_pred HHhCCceeeeeeecccC-CceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCC-CHHHHHHHHcC-
Q psy5021 155 KKFNCIVLPINFNIGIE-ENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNN-DEFFLEKYINN- 231 (1021)
Q Consensus 155 ~~l~~~~~~~~~p~~~~-~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~-d~~l~e~~l~~- 231 (1021)
+.+|.+++++..+.+++ +.+.+.++... ........+.|++..+.+.+.+..+.+.+++. ++.++.+|+++
T Consensus 139 ~~LG~pVvpiSA~~g~GIdeL~~~I~~~~------~~~~~~~~~yp~~le~~I~~l~~~L~e~iae~~~RwLAiKlLEgD 212 (772)
T PRK09554 139 ARLGCPVIPLVSTRGRGIEALKLAIDRHQ------ANENVELVHYPQPLLNEADSLAKVMPSDIPLQQRRWLGLQMLEGD 212 (772)
T ss_pred HHhCCCEEEEEeecCCCHHHHHHHHHHhh------hccCCcccCCCHHHHHHHHHHHHHhhhhhccccchHHHHHHhcCc
Confidence 99999888888776655 22222221111 01111224566677677777777777777665 78899999998
Q ss_pred CCCHH------HHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhC
Q psy5021 232 NYSIN------DIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYL 276 (1021)
Q Consensus 232 ~~~~~------~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~l 276 (1021)
....+ +..+.+++.+......|.+++|+.+..+++.+++.++...
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ia~~ry~~i~~l~~~~v~~~ 263 (772)
T PRK09554 213 IYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDAVSNTL 263 (772)
T ss_pred hHHHhhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 43333 4445566665555557888999999999999999998654
No 176
>COG1159 Era GTPase [General function prediction only]
Probab=99.74 E-value=2.1e-17 Score=172.43 Aligned_cols=117 Identities=25% Similarity=0.299 Sum_probs=89.0
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+.--|||+|.+|+|||||+|+|+.+.-++.+. ...|+.+ +-+|| ...+ ++++.|+||||
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~----k~QTTR~-----~I~GI--------~t~~----~~QiIfvDTPG 63 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSP----KPQTTRN-----RIRGI--------VTTD----NAQIIFVDTPG 63 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecC----Ccchhhh-----heeEE--------EEcC----CceEEEEeCCC
Confidence 34568999999999999999999777666541 1111111 11122 1222 78999999999
Q ss_pred CC--------CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 87 HV--------DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 87 ~~--------~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
.. -....+..++..+|.+++|||+.++....++.+++.++..+.|+++++||+|+...
T Consensus 64 ih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~ 129 (298)
T COG1159 64 IHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP 129 (298)
T ss_pred CCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc
Confidence 62 22456777889999999999999999999999999998878999999999998643
No 177
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.74 E-value=4.4e-17 Score=164.97 Aligned_cols=119 Identities=31% Similarity=0.381 Sum_probs=92.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
+.|+|+|+.|+|||||+++|....... ...+++|.......+.+.. +.++.+++|||||+.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~------------------~~~~~~t~~~~~~~~~~~~-~~~~~~~iiDtpG~~ 61 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAA------------------GEAGGITQHIGAFEVPAEV-LKIPGITFIDTPGHE 61 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccccc------------------ccCCCeEEeeccEEEeccc-CCcceEEEEeCCCcH
Confidence 368999999999999999996322110 0223455544433343320 136789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCH
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANY 146 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~ 146 (1021)
+|...+..+++.+|++++|+|++++...++...++.+...++|+++|+||+|+...+.
T Consensus 62 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 119 (168)
T cd01887 62 AFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANP 119 (168)
T ss_pred HHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccH
Confidence 9998889999999999999999999888888888888889999999999999865443
No 178
>COG1159 Era GTPase [General function prediction only]
Probab=99.74 E-value=2e-17 Score=172.70 Aligned_cols=181 Identities=24% Similarity=0.280 Sum_probs=130.7
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh-hh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH-AD 726 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~-~~ 726 (1021)
.+++..++++|.+|+|||||+|+|++....+.+.... +|.......+..++.++.|+||||. +.
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~Q---------------TTR~~I~GI~t~~~~QiIfvDTPGih~p 67 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQ---------------TTRNRIRGIVTTDNAQIIFVDTPGIHKP 67 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcc---------------hhhhheeEEEEcCCceEEEEeCCCCCCc
Confidence 4678889999999999999999999988777665442 2222223335567899999999992 21
Q ss_pred -------hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 727 -------YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 727 -------~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
..+....++..+|+++||||++++....++..+..++..+.| +|+++||+|...++.... ..+..+...
T Consensus 68 k~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~p-vil~iNKID~~~~~~~l~---~~~~~~~~~ 143 (298)
T COG1159 68 KHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTP-VILVVNKIDKVKPKTVLL---KLIAFLKKL 143 (298)
T ss_pred chHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCC-eEEEEEccccCCcHHHHH---HHHHHHHhh
Confidence 244455667889999999999998888888888888887778 888999999987543222 222222233
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCC------CCCCCCeeEEEEEEEe
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPN------RITDKPFLMPIEDVFS 862 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~------~~~~~p~~~~I~~~~~ 862 (1021)
..| ..++|+||++|. +++.|++.+..++|... ..+|.|.+|.+.++.+
T Consensus 144 ~~f----~~ivpiSA~~g~-----------n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiR 197 (298)
T COG1159 144 LPF----KEIVPISALKGD-----------NVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIR 197 (298)
T ss_pred CCc----ceEEEeeccccC-----------CHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHH
Confidence 333 379999999884 88999999998886422 2356677776665544
No 179
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.72 E-value=1.1e-17 Score=163.08 Aligned_cols=147 Identities=24% Similarity=0.298 Sum_probs=105.0
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh-----
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY----- 727 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~----- 727 (1021)
.++.+|.+|+|||||+|+|++....+++ ..|+|++.....+++.+..+.|+|+||..++
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n----------------~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ 65 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGN----------------WPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSE 65 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEE----------------STTSSSEEEEEEEEETTEEEEEEE----SSSSSSSH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecC----------------CCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCc
Confidence 5688999999999999999996644433 3488999999999999999999999995433
Q ss_pred -HHHHHHHh--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 728 -IKNMITGA--AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 728 -~~~~~~~~--~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
-+.+..++ ..+|++++|+||++ ..+....+..+..+|+| +|+|+||+|...... +.-....+.+.+|
T Consensus 66 ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P-~vvvlN~~D~a~~~g----~~id~~~Ls~~Lg--- 135 (156)
T PF02421_consen 66 EERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIP-VVVVLNKMDEAERKG----IEIDAEKLSERLG--- 135 (156)
T ss_dssp HHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSS-EEEEEETHHHHHHTT----EEE-HHHHHHHHT---
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCC-EEEEEeCHHHHHHcC----CEECHHHHHHHhC---
Confidence 22233333 57999999999986 34556666777889999 999999999875221 1111222333344
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhh
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVL 838 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l 838 (1021)
+|++++||.++ +|+++|+++|
T Consensus 136 --~pvi~~sa~~~-----------~g~~~L~~~I 156 (156)
T PF02421_consen 136 --VPVIPVSARTG-----------EGIDELKDAI 156 (156)
T ss_dssp --S-EEEEBTTTT-----------BTHHHHHHHH
T ss_pred --CCEEEEEeCCC-----------cCHHHHHhhC
Confidence 68999999987 4889998864
No 180
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.72 E-value=4.9e-17 Score=179.15 Aligned_cols=116 Identities=22% Similarity=0.188 Sum_probs=101.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
....|||+|.+|+|||||+|+|+.+...+.. ...|+|+++-...+.|+ +..+.||||+|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-----------------~~aGTTRD~I~~~~e~~----~~~~~liDTAG 235 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-----------------DIAGTTRDSIDIEFERD----GRKYVLIDTAG 235 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEec-----------------CCCCccccceeeeEEEC----CeEEEEEECCC
Confidence 4577999999999999999999977766654 35688999988999999 89999999999
Q ss_pred CC----------CcH-HHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 87 HV----------DFT-IEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 87 ~~----------~f~-~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
.. .|+ ..+..++..+|.+++|+||.+|+..|+..+...+...+.++++++||+|+..
T Consensus 236 iRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~ 303 (444)
T COG1160 236 IRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVE 303 (444)
T ss_pred CCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCC
Confidence 62 332 4567888999999999999999999999999999999999999999999854
No 181
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.72 E-value=1.2e-16 Score=161.81 Aligned_cols=159 Identities=36% Similarity=0.423 Sum_probs=117.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC---CeEEEEEecCChhhhHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE---NKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~---~~~i~liDtpG~~~~~~ 729 (1021)
+.+++|++++|||||+++|++... ......+.|.+.....+... +..+.+|||||+..|..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 65 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNV----------------AAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN 65 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccc----------------ccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH
Confidence 468899999999999999987431 11123456666655555553 67899999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc-ccCCCceE
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY-DFDGENTK 808 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 808 (1021)
.+..++..+|++++|+|++++...++.+.+..+...++| +++|+||+|+.... .+.....+..+.... ......++
T Consensus 66 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd01887 66 MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVP-FIVALNKIDKPNAN--PERVKNELSELGLQGEDEWGGDVQ 142 (168)
T ss_pred HHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEEceeccccc--HHHHHHHHHHhhccccccccCcCc
Confidence 888889999999999999998888899888888889999 89999999987521 122222333222111 00123468
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++||++|. |+++|+++|.+.
T Consensus 143 ~~~~Sa~~~~-----------gi~~l~~~l~~~ 164 (168)
T cd01887 143 IVPTSAKTGE-----------GIDDLLEAILLL 164 (168)
T ss_pred EEEeecccCC-----------CHHHHHHHHHHh
Confidence 9999999873 899999998763
No 182
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.72 E-value=4e-17 Score=143.65 Aligned_cols=85 Identities=28% Similarity=0.393 Sum_probs=80.5
Q ss_pred CCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCcccc
Q psy5021 295 SNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESST 374 (1021)
Q Consensus 295 ~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~ 374 (1021)
++||+++|||+.+|++.|+++|+|||||+|++||.|++.. ++.+++.+||.++|.++.++++|.||||+++.|++++.+
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~ 79 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILTGLKGLRV 79 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEECCCCCcC
Confidence 3789999999999999999999999999999999999877 667899999999999999999999999999999999999
Q ss_pred CCeecc
Q psy5021 375 GDTLCS 380 (1021)
Q Consensus 375 gdtl~~ 380 (1021)
||||++
T Consensus 80 Gdtl~~ 85 (85)
T cd03690 80 GDVLGD 85 (85)
T ss_pred ccccCC
Confidence 999963
No 183
>PRK15494 era GTPase Era; Provisional
Probab=99.71 E-value=1.5e-16 Score=178.37 Aligned_cols=116 Identities=20% Similarity=0.156 Sum_probs=84.3
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..+|+++|++|+|||||+++|+.....+.. ...+.|.......+.+. +++++||||||
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs-----------------~k~~tTr~~~~~~~~~~----~~qi~~~DTpG 109 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVT-----------------PKVQTTRSIITGIITLK----DTQVILYDTPG 109 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeecc-----------------CCCCCccCcEEEEEEeC----CeEEEEEECCC
Confidence 3458999999999999999999754322211 11123333323334555 77899999999
Q ss_pred CCCc--------HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 87 HVDF--------TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 87 ~~~f--------~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
+.+. ......+++.+|++|+|+|+.++.......++..+...+.|.++|+||+|+..
T Consensus 110 ~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~ 174 (339)
T PRK15494 110 IFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES 174 (339)
T ss_pred cCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc
Confidence 8543 22233467899999999999988877777777777778889999999999853
No 184
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.71 E-value=1.7e-16 Score=173.22 Aligned_cols=111 Identities=21% Similarity=0.139 Sum_probs=77.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|++|+|||||+|+|+.....+.. ...+.|........... +.++.|+||||+.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs-----------------~~~~TTr~~i~~i~~~~----~~qii~vDTPG~~~ 60 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITS-----------------PKAQTTRNRISGIHTTG----ASQIIFIDTPGFHE 60 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecC-----------------CCCCcccCcEEEEEEcC----CcEEEEEECcCCCC
Confidence 4899999999999999999754332211 01122222111111122 56799999999864
Q ss_pred c--------HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 90 F--------TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f--------~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
. ...+..++..+|++++|+|++.+.... ..++..+...+.|+++|+||+|+.
T Consensus 61 ~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 61 KKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred CcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 3 223566789999999999999876554 566677777899999999999985
No 185
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.71 E-value=3.5e-17 Score=159.52 Aligned_cols=109 Identities=18% Similarity=0.276 Sum_probs=82.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|.+|+|||||+|+|.... .+.|+ -+|.|+......+.+. +..+.|+||||..+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~---~~v~n---------------~pG~Tv~~~~g~~~~~----~~~~~lvDlPG~ys 59 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK---QKVGN---------------WPGTTVEKKEGIFKLG----DQQVELVDLPGIYS 59 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS---EEEEE---------------STTSSSEEEEEEEEET----TEEEEEEE----SS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---ceecC---------------CCCCCeeeeeEEEEec----CceEEEEECCCccc
Confidence 58999999999999999996443 22222 2478888888888888 89999999999755
Q ss_pred cH------HHHHHHh--hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 90 FT------IEVERSL--RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~------~~~~~~l--~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+. ..+..++ ...|++|+|+||+. ..+...+..++.+.++|+++++||+|+.
T Consensus 60 l~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a 118 (156)
T PF02421_consen 60 LSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEA 118 (156)
T ss_dssp SSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHH
T ss_pred CCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 43 1123344 57899999999987 3556677788899999999999999963
No 186
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.70 E-value=2.5e-16 Score=171.89 Aligned_cols=128 Identities=32% Similarity=0.439 Sum_probs=109.9
Q ss_pred eeeeeeeeeccchhhhhhhccccccccc-ccc-ccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYG-GEV-RAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~~-~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
+++++|++++|||||+++|+.....+.. +.. ...+.+|..++|+.+++|+......+++++..+++||||||.+|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 3678999999999999999864433221 111 23356788899999999999998999999999999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
+..+++.+|++++|+|++.+...++...+..+...++| .++++||+|+..
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p-~iivvNK~D~~~ 130 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIP-RIIFINKMDRER 130 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECCccCC
Confidence 99999999999999999999999999999999999999 777999999875
No 187
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.70 E-value=1.8e-16 Score=160.46 Aligned_cols=117 Identities=17% Similarity=0.116 Sum_probs=83.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
||+++|+.|+|||||+++|....... .+.. . .....|+......+.+. +..+++|||||+.+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~-------~~~~-----~--~~~~~t~~~~~~~~~~~----~~~~~l~Dt~G~~~ 62 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY-------KGLP-----P--SKITPTVGLNIGTIEVG----NARLKFWDLGGQES 62 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc-------cCCc-----c--cccCCccccceEEEEEC----CEEEEEEECCCChh
Confidence 78999999999999999997543210 0000 0 11233444455566666 78999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCch-hHHHHHHHHh----hcCCCEEEEEeCcCCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQP-QTETVWFQSQ----KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~-~t~~~~~~~~----~~~~p~iiviNK~D~~~~ 144 (1021)
|...+...++.+|++++|+|+++.-.. .....+..+. ..++|+++++||+|++..
T Consensus 63 ~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 63 LRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred hHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 999999999999999999999864211 1222223222 357999999999998643
No 188
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.70 E-value=1e-16 Score=143.19 Aligned_cols=88 Identities=34% Similarity=0.691 Sum_probs=83.7
Q ss_pred CCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCc
Q psy5021 850 DKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEV 929 (1021)
Q Consensus 850 ~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i 929 (1021)
++||||+|+++|+++|.|++++|+|++|.+++||++.++|.+ ..++|+||++++.++++|.|||+|+|.|++++..++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~--~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v 79 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG--VTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDI 79 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCC--cEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHc
Confidence 679999999999999999999999999999999999999975 468999999999999999999999999999999999
Q ss_pred ccceEEeeCC
Q psy5021 930 ERGQVLAKIG 939 (1021)
Q Consensus 930 ~~G~vl~~~~ 939 (1021)
++|+|||+++
T Consensus 80 ~~G~vl~~~~ 89 (91)
T cd03693 80 KRGDVAGDSK 89 (91)
T ss_pred CCcCEEccCC
Confidence 9999999875
No 189
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.70 E-value=2.3e-16 Score=157.56 Aligned_cols=112 Identities=23% Similarity=0.277 Sum_probs=87.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCcH
Q psy5021 12 GIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFT 91 (1021)
Q Consensus 12 ~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~ 91 (1021)
+++|++|+|||||+++|+....... +...++|.........+. ++.+.+|||||+.++.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~----~~~~~i~DtpG~~~~~ 59 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIV-----------------EDTPGVTRDRIYGEAEWG----GREFILIDTGGIEPDD 59 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEee-----------------cCCCCceeCceeEEEEEC----CeEEEEEECCCCCCch
Confidence 5899999999999999974321110 012345555555555666 7889999999999865
Q ss_pred H--------HHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 92 I--------EVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 92 ~--------~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
. ++...++.+|++++|+|+.++.......+++++...+.|+++|+||+|+...
T Consensus 60 ~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 60 EGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE 120 (157)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh
Confidence 4 5567789999999999999988888888888888889999999999998643
No 190
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=2.7e-16 Score=184.39 Aligned_cols=115 Identities=22% Similarity=0.172 Sum_probs=94.1
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
...+|+|+|++|+|||||+++|++....+.. ..+|.|.++....+.+. +..+++|||||
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~-----------------~~~gtt~~~~~~~~~~~----~~~~~lvDT~G 230 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVS-----------------DIAGTTRDSIDTPFERD----GQKYTLIDTAG 230 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeec-----------------CCCCceEEEEEEEEEEC----CeeEEEEECCC
Confidence 4578999999999999999999854432221 24577887766666666 78899999999
Q ss_pred CCCcH-----------HHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFT-----------IEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~-----------~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+.+.. ..+.++++.+|++|+|+|+++|...++..+++++...++|+++++||+|+.
T Consensus 231 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 231 IRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 75432 234568899999999999999999999999999999999999999999986
No 191
>KOG0469|consensus
Probab=99.69 E-value=8.7e-17 Score=173.85 Aligned_cols=136 Identities=29% Similarity=0.429 Sum_probs=112.4
Q ss_pred hccCCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe-----------
Q psy5021 642 LFGYSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE----------- 710 (1021)
Q Consensus 642 ~~~~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~----------- 710 (1021)
+++-...+|.++ ...|++||||||.+.|+....-+.....-..+++|..+.|.+||+|+.++.+++.
T Consensus 12 lM~k~~NiRNmS--VIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~ 89 (842)
T KOG0469|consen 12 LMDKKKNIRNMS--VIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFI 89 (842)
T ss_pred Hhccccccccce--EEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHh
Confidence 344444555554 5779999999999999987666654444455678999999999999998887652
Q ss_pred -----eCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Q psy5021 711 -----SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 711 -----~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~ 780 (1021)
.++..+++||.|||-+|.+....+++..|+|++|||+-+|+.-||+..+..+....+++ ++++||+|..
T Consensus 90 k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkP-vlv~NK~DRA 163 (842)
T KOG0469|consen 90 KQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLVMNKMDRA 163 (842)
T ss_pred cCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccc-eEEeehhhHH
Confidence 24567899999999999999999999999999999999999999999999999888874 5688999954
No 192
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.69 E-value=3.6e-16 Score=183.19 Aligned_cols=115 Identities=21% Similarity=0.137 Sum_probs=93.3
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
..-+|+++|++|+|||||+++|+.....+.. ...|.|.++....+.+. +..+.+|||||
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-----------------~~~gtt~~~~~~~~~~~----~~~~~liDT~G 229 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVS-----------------DIAGTTRDSIDIPFERN----GKKYLLIDTAG 229 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecC-----------------CCCCceECcEeEEEEEC----CcEEEEEECCC
Confidence 3468999999999999999999754332211 23467777666666666 67899999999
Q ss_pred CCCcHH-----------HHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTI-----------EVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~-----------~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+.++.. .+..+++.+|++|+|+|++++...++..+++.+...++|+++|+||+|+.
T Consensus 230 ~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 230 IRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred ccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 865532 23567899999999999999999999999999999999999999999986
No 193
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.68 E-value=1.7e-16 Score=139.63 Aligned_cols=83 Identities=45% Similarity=0.771 Sum_probs=79.5
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCe
Q psy5021 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDT 377 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdt 377 (1021)
|+++|||+.+|++.|+++|+|||+|+|++||.|++...++++++.+|+.++|.+..++++|.||||+++.|++++++|||
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdt 80 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQTRTGDT 80 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCcccCCE
Confidence 57999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred ecc
Q psy5021 378 LCS 380 (1021)
Q Consensus 378 l~~ 380 (1021)
||.
T Consensus 81 l~~ 83 (83)
T cd04092 81 LVT 83 (83)
T ss_pred EeC
Confidence 974
No 194
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.67 E-value=1.3e-15 Score=154.82 Aligned_cols=116 Identities=22% Similarity=0.188 Sum_probs=86.4
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
..+|+++|++|+|||||+++|+........ ..++.|.......+.+. +..+++|||||+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~----~~~~~iiDtpG~ 60 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVS-----------------DIAGTTRDSIDVPFEYD----GKKYTLIDTAGI 60 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceecc-----------------CCCCCccCceeeEEEEC----CeeEEEEECCCC
Confidence 467999999999999999999743221111 12344444433444555 667899999998
Q ss_pred CCcH-----------HHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 88 VDFT-----------IEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 88 ~~f~-----------~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
.++. .....+++.+|++++|+|+..+...+...+++.+...+.|+++++||+|+...
T Consensus 61 ~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 61 RRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred ccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCc
Confidence 6542 22345678999999999999998888888888888889999999999998644
No 195
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.67 E-value=1.1e-15 Score=155.00 Aligned_cols=119 Identities=20% Similarity=0.183 Sum_probs=84.6
Q ss_pred CCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeee--eeEEEeecccCcee
Q psy5021 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA--SVSIFWEVNKFKYM 78 (1021)
Q Consensus 1 m~~~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~--~~~~~~~~~~~~~~ 78 (1021)
|+ .....++|+++|+.|+|||||+++|.... .. ...+.|+... ...+.+. +....
T Consensus 1 ~~-~~~~~~~v~v~G~~~~GKSsli~~l~~~~--~~------------------~~~~~t~~~~~~~~~~~~~--~~~~~ 57 (169)
T cd04114 1 ME-DYDFLFKIVLIGNAGVGKTCLVRRFTQGL--FP------------------PGQGATIGVDFMIKTVEIK--GEKIK 57 (169)
T ss_pred CC-CCCceeEEEEECCCCCCHHHHHHHHHhCC--CC------------------CCCCCceeeEEEEEEEEEC--CEEEE
Confidence 55 24567999999999999999999996311 11 0112333322 2233333 33467
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH----HHHhhcCCCEEEEEeCcCCC
Q psy5021 79 INIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW----FQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 79 i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~----~~~~~~~~p~iiviNK~D~~ 142 (1021)
+.+|||||+.+|...+..+++.+|++++|+|++++...+....| +.....++|+++++||+|+.
T Consensus 58 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 58 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 88999999999999999999999999999999876544333344 33334579999999999985
No 196
>KOG0464|consensus
Probab=99.67 E-value=2.9e-17 Score=173.61 Aligned_cols=129 Identities=30% Similarity=0.409 Sum_probs=111.7
Q ss_pred ceeeeeeeeeccchhhhhhhcccccccc--ccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIY--GGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~--~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
-.+|+..|.++||||...+++...+.+. +..-...+++|-...|++||+|+....+.|+|.++++++||||||-+|.-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 4679999999999999999875443332 11112334678889999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
...+.++.-|+++.|+|++.|+..||...|..+..+++| -+..+||||...
T Consensus 118 everclrvldgavav~dasagve~qtltvwrqadk~~ip-~~~finkmdk~~ 168 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIP-AHCFINKMDKLA 168 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCc-hhhhhhhhhhhh
Confidence 999999999999999999999999999999999999999 566889999764
No 197
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.66 E-value=1e-15 Score=154.54 Aligned_cols=116 Identities=20% Similarity=0.231 Sum_probs=82.1
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
..++|+++|+.|+|||||+++|.... ... +....++.......+.+. +....+++|||||
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~--~~~----------------~~~~t~~~~~~~~~~~~~--~~~~~l~i~D~~G 61 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGT--FSE----------------RQGNTIGVDFTMKTLEIE--GKRVKLQIWDTAG 61 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCC--Ccc----------------cCCCccceEEEEEEEEEC--CEEEEEEEEECCC
Confidence 56899999999999999999996321 110 001111222222334443 2246889999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-Hh---hcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-SQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~~---~~~~p~iiviNK~D~~ 142 (1021)
+.+|...+...++.+|++++|+|+++....+....|.. +. ..++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 121 (165)
T cd01864 62 QERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE 121 (165)
T ss_pred hHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 99999999999999999999999998655444444422 22 3478999999999985
No 198
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.66 E-value=9.2e-16 Score=180.37 Aligned_cols=117 Identities=18% Similarity=0.176 Sum_probs=90.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+..++|+++|++|+|||||+++|+.....+.. ...|+|.+.....+.+. +..+.|||||
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s-----------------~~~gtT~d~~~~~~~~~----~~~~~l~DTa 267 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVD-----------------DVAGTTVDPVDSLIELG----GKTWRFVDTA 267 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCccccc-----------------CCCCccCCcceEEEEEC----CEEEEEEECC
Confidence 35689999999999999999999743322111 23455665555556666 6788999999
Q ss_pred CCC---------CcHHH--HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 86 GHV---------DFTIE--VERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~---------~f~~~--~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|.. +|... ...+++.+|++|+|+|++++...+...++..+...++|+|+|+||+|+..
T Consensus 268 G~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 268 GLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred CccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 963 22222 23467899999999999999999999999888889999999999999864
No 199
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.66 E-value=4.4e-16 Score=137.71 Aligned_cols=85 Identities=22% Similarity=0.430 Sum_probs=80.5
Q ss_pred eeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeec--CCeeEEEEEEEEecccccceeccCceEEEEecccCccCcc
Q psy5021 853 FLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGY--KQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVE 930 (1021)
Q Consensus 853 ~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~--~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~ 930 (1021)
|+|+|+++|+++|.|+|++|+|++|.+++||++.+.|. +++..++|+||++++.++++|.|||+|+++|++++..+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence 57999999999999999999999999999999999997 3457899999999999999999999999999999999999
Q ss_pred cceEEee
Q psy5021 931 RGQVLAK 937 (1021)
Q Consensus 931 ~G~vl~~ 937 (1021)
+|+|||+
T Consensus 81 ~G~vl~~ 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CccEEeC
Confidence 9999974
No 200
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.66 E-value=1.3e-15 Score=166.26 Aligned_cols=172 Identities=19% Similarity=0.184 Sum_probs=114.0
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh------
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD------ 726 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~------ 726 (1021)
.++++|.+|+|||||+|+|++....+... ..++|.+.....+...+.++.||||||+.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~---------------~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~ 66 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSP---------------KAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLN 66 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCC---------------CCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHH
Confidence 35788999999999999999864332221 123344333333444567899999999643
Q ss_pred --hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 727 --YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 727 --~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
+.+.+..++..+|++++|+|+++....+ ...+..+...+.| +++|+||+|+.+... ....+..+....++
T Consensus 67 ~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p-~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~-- 138 (270)
T TIGR00436 67 RLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRP-VVLTRNKLDNKFKDK----LLPLIDKYAILEDF-- 138 (270)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCC-EEEEEECeeCCCHHH----HHHHHHHHHhhcCC--
Confidence 2334556778999999999999865544 4455666777888 889999999975322 22233334333333
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCC------CCCCCCeeEEEEEE
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPN------RITDKPFLMPIEDV 860 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~------~~~~~p~~~~I~~~ 860 (1021)
.+++++||++| .|+++|+++|.+.+|... ..++.|.++.+.++
T Consensus 139 --~~v~~iSA~~g-----------~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ 187 (270)
T TIGR00436 139 --KDIVPISALTG-----------DNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEI 187 (270)
T ss_pred --CceEEEecCCC-----------CCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHH
Confidence 26899999988 389999999988775322 12345555544444
No 201
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.65 E-value=2e-15 Score=153.25 Aligned_cols=112 Identities=15% Similarity=0.164 Sum_probs=74.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCce-eEEEEcCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKY-MINIIDTPGHV 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~-~i~liDtPG~~ 88 (1021)
||+++|++|+|||||+++|......+ +. ..+.|+......+.+. ++ .++||||||+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v---~~---------------~~~~t~~~~~~~~~~~----~~~~~~l~DtpG~~ 59 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKI---AD---------------YPFTTLVPNLGVVRVD----DGRSFVVADIPGLI 59 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccc---cC---------------CCccccCCcceEEEcC----CCCeEEEEecCccc
Confidence 79999999999999999996322110 00 1123444443444554 44 89999999974
Q ss_pred C-------cHHHHHHHhhccCeEEEEEeCCCC-CchhHHHHH-HHHhh-----cCCCEEEEEeCcCCCC
Q psy5021 89 D-------FTIEVERSLRVLDGAVIIICASSG-IQPQTETVW-FQSQK-----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 ~-------f~~~~~~~l~~~D~~ilvvda~~g-~~~~t~~~~-~~~~~-----~~~p~iiviNK~D~~~ 143 (1021)
+ +...+.+.+..+|++++|+|++++ -..+....| +.+.. .++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 60 EGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred CcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 2 344555667789999999999986 333333333 23322 3689999999999853
No 202
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.65 E-value=5.7e-16 Score=135.96 Aligned_cols=81 Identities=26% Similarity=0.381 Sum_probs=77.8
Q ss_pred EEEEEEee---cCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCC
Q psy5021 300 SLVFKIFH---DPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGD 376 (1021)
Q Consensus 300 ~~V~k~~~---~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gd 376 (1021)
++|||+.+ ||+.|+++|+|||||+|++||.|++...++.+++.+|+.++|.+..++++|.||||+++.|++++.+||
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~~~Gd 80 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNFQIGD 80 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCccccC
Confidence 58999999 999999999999999999999999988887899999999999999999999999999999999999999
Q ss_pred eecc
Q psy5021 377 TLCS 380 (1021)
Q Consensus 377 tl~~ 380 (1021)
|||+
T Consensus 81 tl~~ 84 (85)
T cd03689 81 TLTE 84 (85)
T ss_pred EeeC
Confidence 9985
No 203
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.65 E-value=1.6e-15 Score=152.05 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=77.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.++|||||+++|..... . ++. .|+......+.+. +..+++|||||+.+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~--~------------~~~-------~t~~~~~~~~~~~----~~~~~i~Dt~G~~~ 55 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV--V------------TTI-------PTIGFNVETVTYK----NLKFQVWDLGGQTS 55 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC--c------------CcC-------CccCcCeEEEEEC----CEEEEEEECCCCHH
Confidence 489999999999999999953111 0 010 1222222234454 78899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHH-HHh---hcCCCEEEEEeCcCCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQ-TETVWF-QSQ---KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~-~~~---~~~~p~iiviNK~D~~~~ 144 (1021)
|...+..+++.+|++|+|+|+++..... ..+.|. .+. ..++|+++++||+|+..+
T Consensus 56 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 56 IRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 9999999999999999999998743221 123332 222 247899999999998654
No 204
>PRK15494 era GTPase Era; Provisional
Probab=99.65 E-value=7e-16 Score=172.90 Aligned_cols=179 Identities=20% Similarity=0.234 Sum_probs=123.2
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh-
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD- 726 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~- 726 (1021)
+-++..++++|.+|+|||||+|+|++....+. ....+.|.+.....+..++.++.||||||+.+
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~iv---------------s~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIV---------------TPKVQTTRSIITGIITLKDTQVILYDTPGIFEP 113 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeec---------------cCCCCCccCcEEEEEEeCCeEEEEEECCCcCCC
Confidence 34567889999999999999999997542211 11224455555555667788999999999732
Q ss_pred -------hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 727 -------YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 727 -------~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
+.+....++..||++|+|+|+.++.......++..+...+.| .|+|+||+|+.+. ... ++.+.+..
T Consensus 114 ~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p-~IlViNKiDl~~~--~~~----~~~~~l~~ 186 (339)
T PRK15494 114 KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIV-PIFLLNKIDIESK--YLN----DIKAFLTE 186 (339)
T ss_pred cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEEhhcCccc--cHH----HHHHHHHh
Confidence 233334457899999999999887666666677777777888 5678999998642 122 23333332
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC------CCCCCCCeeEEEEEEEe
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP------NRITDKPFLMPIEDVFS 862 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~------~~~~~~p~~~~I~~~~~ 862 (1021)
.. ....++++||++| .|+++|+++|.+.++.. ...+|.|.++.+.++.+
T Consensus 187 ~~---~~~~i~~iSAktg-----------~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiR 241 (339)
T PRK15494 187 NH---PDSLLFPISALSG-----------KNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITR 241 (339)
T ss_pred cC---CCcEEEEEeccCc-----------cCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 22 1247899999988 38999999998877532 22456677777665544
No 205
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.64 E-value=2.4e-15 Score=153.19 Aligned_cols=114 Identities=20% Similarity=0.165 Sum_probs=79.5
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+-..|+++|+.|+|||||+++|.... .. .+ ..|+......+.+. ++.+++||||
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~--~~------------~~-------~~t~g~~~~~~~~~----~~~l~l~D~~ 66 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGED--ID------------TI-------SPTLGFQIKTLEYE----GYKLNIWDVG 66 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCC--CC------------Cc-------CCccccceEEEEEC----CEEEEEEECC
Confidence 345679999999999999999996321 00 00 01222122234444 6889999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHHHH----hhcCCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQ-TETVWFQS----QKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~~~----~~~~~p~iiviNK~D~~~~ 144 (1021)
|+..|...+..+++.+|++++|+|+++..... ....+... ...+.|+++++||+|+...
T Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 67 GQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred CCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 99999988999999999999999998762221 11222222 2357999999999998643
No 206
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.64 E-value=8.2e-16 Score=135.46 Aligned_cols=83 Identities=53% Similarity=0.959 Sum_probs=79.5
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCe
Q psy5021 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDT 377 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdt 377 (1021)
++++|||+.+|++.|+++|+|||+|+|++||.|++...++.+++.+|+.++|.++.+++++.||||+++.|++++.+|||
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~~~Gdt 80 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTATGDT 80 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCCCccCCE
Confidence 57999999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred ecc
Q psy5021 378 LCS 380 (1021)
Q Consensus 378 l~~ 380 (1021)
|++
T Consensus 81 l~~ 83 (83)
T cd04088 81 LCD 83 (83)
T ss_pred eeC
Confidence 963
No 207
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.64 E-value=6.2e-16 Score=136.96 Aligned_cols=87 Identities=76% Similarity=1.184 Sum_probs=81.4
Q ss_pred eeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccc
Q psy5021 853 FLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERG 932 (1021)
Q Consensus 853 ~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G 932 (1021)
|+|+|+++|+++|.|++++|+|++|++++||++.+.|.+...+++|+||++++.++++|.|||+|+++|++++..++.+|
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG 80 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERG 80 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCc
Confidence 68999999999999999999999999999999999986545678999999999999999999999999999999999999
Q ss_pred eEEeeCC
Q psy5021 933 QVLAKIG 939 (1021)
Q Consensus 933 ~vl~~~~ 939 (1021)
+|||+++
T Consensus 81 ~vl~~~~ 87 (87)
T cd03697 81 MVLAKPG 87 (87)
T ss_pred cEEecCC
Confidence 9998753
No 208
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.64 E-value=2.9e-15 Score=150.62 Aligned_cols=112 Identities=21% Similarity=0.193 Sum_probs=77.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
||+++|..++|||||+++|......... + ..|+......+.+. +..+++|||||+.+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~------------~-------~~t~g~~~~~~~~~----~~~~~l~Dt~G~~~ 57 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI------------I-------VPTVGFNVESFEKG----NLSFTAFDMSGQGK 57 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce------------e-------cCccccceEEEEEC----CEEEEEEECCCCHh
Confidence 5899999999999999999642110000 0 01222222233444 78899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHH------hhcCCCEEEEEeCcCCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQS------QKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~------~~~~~p~iiviNK~D~~~~ 144 (1021)
|...+..+++.+|++|+|+|+++...... ...+..+ ...++|+++|+||+|+...
T Consensus 58 ~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 58 YRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred hHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 99999999999999999999997643211 1122222 1247999999999998653
No 209
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.64 E-value=1.2e-15 Score=133.93 Aligned_cols=83 Identities=33% Similarity=0.620 Sum_probs=78.9
Q ss_pred CeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCccc
Q psy5021 852 PFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVER 931 (1021)
Q Consensus 852 p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~ 931 (1021)
||+|+|+++|+++ .|++++|+|++|++++||++.+.|.+. .++|++|++++.++++|.|||+|+++|++++..++++
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~--~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~ 77 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKE--SVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISP 77 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCc--EEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCC
Confidence 7999999999999 999999999999999999999999764 5899999999999999999999999999999999999
Q ss_pred ceEEee
Q psy5021 932 GQVLAK 937 (1021)
Q Consensus 932 G~vl~~ 937 (1021)
|++||+
T Consensus 78 G~vl~~ 83 (83)
T cd03698 78 GDVLCS 83 (83)
T ss_pred CCEEeC
Confidence 999974
No 210
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.64 E-value=2.9e-15 Score=150.07 Aligned_cols=110 Identities=20% Similarity=0.171 Sum_probs=79.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.|+|||||++++..... .. ...|+......+.+. ...+++|||||+..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~~-------------------~~~t~~~~~~~~~~~----~~~~~i~D~~G~~~ 55 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--VT-------------------TIPTIGFNVETVEYK----NVSFTVWDVGGQDK 55 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--CC-------------------CCCCcCcceEEEEEC----CEEEEEEECCCChh
Confidence 489999999999999999974321 00 011222233345555 78899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHHHH----hhcCCCEEEEEeCcCCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQS----QKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~~~----~~~~~p~iiviNK~D~~~~ 144 (1021)
|...+...++.+|++++|+|++.+. .......+... ...+.|+++|+||+|+...
T Consensus 56 ~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 56 IRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA 115 (158)
T ss_pred hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc
Confidence 9999999999999999999999762 12223333322 2457999999999998643
No 211
>KOG0092|consensus
Probab=99.64 E-value=1e-15 Score=148.25 Aligned_cols=162 Identities=18% Similarity=0.204 Sum_probs=124.2
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
..-.-.+|-.++|||||+-|+.+.. +...+|.+.|...-...+.+.....++.+|||+|+++|-..
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~--------------F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~sl 70 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQ--------------FHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSL 70 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCc--------------cccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccc
Confidence 3455678889999999999999843 33335677777666666666555677889999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeEEE--EEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 731 MITGAAQMDGAILVCSAVDGP-MPQTREHILLARQVGVPNIVV--FLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~~~ip~iIv--viNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
...|+++|++||+|+|.++.. +.+.+.++..+....-|.+++ |.||+|+.+..+ -..++...+....| .
T Consensus 71 apMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~---V~~~ea~~yAe~~g-----l 142 (200)
T KOG0092|consen 71 APMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERRE---VEFEEAQAYAESQG-----L 142 (200)
T ss_pred ccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhccc---ccHHHHHHHHHhcC-----C
Confidence 999999999999999999854 456677778887776676776 789999986211 12245556666555 4
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
.++.+||++|. |+++++..|.+.+|..
T Consensus 143 l~~ETSAKTg~-----------Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 143 LFFETSAKTGE-----------NVNEIFQAIAEKLPCS 169 (200)
T ss_pred EEEEEeccccc-----------CHHHHHHHHHHhccCc
Confidence 79999999984 8999999999888644
No 212
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.63 E-value=1.3e-15 Score=133.20 Aligned_cols=81 Identities=38% Similarity=0.733 Sum_probs=77.2
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCe
Q psy5021 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDT 377 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdt 377 (1021)
|+++|||+.+|++ |+++|+|||+|+|++||.|++...++++++.+|+.++|.++.+++++.||||+++.|++ +.+|||
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~-~~~Gdt 78 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGID-CASGDT 78 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEECCC-cccCCE
Confidence 5799999999998 99999999999999999999998888899999999999999999999999999999998 999999
Q ss_pred ecc
Q psy5021 378 LCS 380 (1021)
Q Consensus 378 l~~ 380 (1021)
|++
T Consensus 79 l~~ 81 (81)
T cd04091 79 FTD 81 (81)
T ss_pred ecC
Confidence 963
No 213
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.63 E-value=4.6e-15 Score=149.18 Aligned_cols=113 Identities=15% Similarity=0.199 Sum_probs=79.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.|+|||||+++++...-... ...|............++....+++|||||+..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 61 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQ--------------------QLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC--------------------cCCceeeEEEEEEEEECCEEEEEEEEeCCCchh
Confidence 689999999999999999974211000 001111111111112233467899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh--cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~--~~~p~iiviNK~D~~ 142 (1021)
|...+..+++.+|++|+|+|++++...+....| ..+.+ .++|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 62 FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred hhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 999999999999999999999887655544444 33333 379999999999974
No 214
>PRK00089 era GTPase Era; Reviewed
Probab=99.63 E-value=5.9e-15 Score=163.51 Aligned_cols=115 Identities=21% Similarity=0.191 Sum_probs=82.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+...|+++|++|+|||||+|+|+.....+... .. +.|........... +.++.|+||||
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~---~~--------------~tt~~~i~~i~~~~----~~qi~~iDTPG 62 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP---KP--------------QTTRHRIRGIVTED----DAQIIFVDTPG 62 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCC---CC--------------CcccccEEEEEEcC----CceEEEEECCC
Confidence 46689999999999999999997543322110 00 11111111011112 57899999999
Q ss_pred CCCc--------HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 87 HVDF--------TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f--------~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+.+. ...+..++..+|++++|+|++++.......+++.+...++|+++|+||+|+.
T Consensus 63 ~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 63 IHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred CCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 8654 2445667889999999999999777777788888877789999999999985
No 215
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.63 E-value=4.3e-15 Score=150.43 Aligned_cols=113 Identities=14% Similarity=0.172 Sum_probs=73.3
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
|+|+++|++|+|||||+++|+....... ...+.|.......+.+. +..+++|||||+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~------------------~~~~~t~~~~~~~~~~~----~~~~~i~Dt~G~~ 58 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA------------------PYPFTTKSLFVGHFDYK----YLRWQVIDTPGLL 58 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC------------------CCCCcccceeEEEEccC----ceEEEEEECCCcC
Confidence 6899999999999999999964321100 01233444333344444 6899999999985
Q ss_pred CcH--------HHHHHHh-hccCeEEEEEeCCCCCc---hhHHHHHHHHhhc--CCCEEEEEeCcCCCC
Q psy5021 89 DFT--------IEVERSL-RVLDGAVIIICASSGIQ---PQTETVWFQSQKY--KVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 ~f~--------~~~~~~l-~~~D~~ilvvda~~g~~---~~t~~~~~~~~~~--~~p~iiviNK~D~~~ 143 (1021)
+.. .....++ ..+|++|+|+|+++... ......+..+... ++|+++++||+|+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 59 DRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLT 127 (168)
T ss_pred CccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCc
Confidence 321 1122222 33699999999987532 2223444555444 799999999999853
No 216
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.63 E-value=3.6e-15 Score=149.91 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=80.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.++|||||+++|+...-.... . .|+.....+..+..++....+++|||||+.+
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~------------------~--~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~ 61 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDS------------------Q--HTIGVEFGSKIIRVGGKRVKLQIWDTAGQER 61 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC------------------C--CceeeeEEEEEEEECCEEEEEEEEECcchHH
Confidence 7999999999999999999743211110 0 1111111122222233367899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH---hhcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS---QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~---~~~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++|+|+|++++...+....| ... ...++|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 62 FRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 999999999999999999999987655544444 222 33589999999999985
No 217
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.63 E-value=4.5e-15 Score=149.60 Aligned_cols=112 Identities=16% Similarity=0.197 Sum_probs=77.0
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeee-eeeEEEeecccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITS-ASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~-~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-+|+++|.+|+|||||+++++....... +.+ |+.. -...+.+. +....+++|||||+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~-------------~~~-------t~~~~~~~~~~~~--~~~~~~~i~Dt~G~ 60 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTD-------------YDP-------TIEDSYTKQCEID--GQWAILDILDTAGQ 60 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcc-------------cCC-------CccceEEEEEEEC--CEEEEEEEEECCCC
Confidence 4799999999999999999975322110 000 1110 01112222 22567999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HH----HhhcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQ----SQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~----~~~~~~p~iiviNK~D~~ 142 (1021)
.+|...+..+++.+|++++|+|+++....+...-| .. ....++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 61 EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 99999999999999999999999875433222222 22 223578999999999985
No 218
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.63 E-value=5.6e-15 Score=150.52 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=81.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
..++|+++|+.|+|||||+++|.... ... ...|+......+.+. +..+.++||||
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~--~~~-------------------~~~t~~~~~~~~~~~----~~~~~l~D~~G 68 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGE--VVH-------------------TSPTIGSNVEEIVYK----NIRFLMWDIGG 68 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCC--CCC-------------------cCCccccceEEEEEC----CeEEEEEECCC
Confidence 35789999999999999999996311 100 012333333455565 78899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchh-HHH-HHHHHhh---cCCCEEEEEeCcCCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQ-TET-VWFQSQK---YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~-~~~~~~~---~~~p~iiviNK~D~~~ 143 (1021)
+..|...+..+++.+|++|+|+|+++..... ... +.+.+.. .++|+++++||+|+++
T Consensus 69 ~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 69 QESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred CHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 9999999999999999999999998753221 122 2233322 3689999999999864
No 219
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=1.1e-14 Score=140.77 Aligned_cols=127 Identities=22% Similarity=0.175 Sum_probs=99.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-.|+|+|..++||||+++++......+... .++ .+... ..|..|+.....++.+.. ++.+.|+|||||.
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~----~~~--~~s~k--~kr~tTva~D~g~~~~~~---~~~v~LfgtPGq~ 79 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEA----DAS--SVSGK--GKRPTTVAMDFGSIELDE---DTGVHLFGTPGQE 79 (187)
T ss_pred eeEEEEcccccchhhHHHHhhccccceeec----ccc--ccccc--cccceeEeecccceEEcC---cceEEEecCCCcH
Confidence 578999999999999999998655432210 000 00000 034467776666666662 4899999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcC-CCEEEEEeCcCCCCCCH
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK-VPKMIFVNKMDRIGANY 146 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~-~p~iiviNK~D~~~~~~ 146 (1021)
+|...+.-.++.++++|++||++.+.....+++++.....+ +|+++++||.|++.+..
T Consensus 80 RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~p 138 (187)
T COG2229 80 RFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALP 138 (187)
T ss_pred HHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCC
Confidence 99999999999999999999999998888888888888877 99999999999987654
No 220
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.62 E-value=3.2e-15 Score=149.37 Aligned_cols=148 Identities=21% Similarity=0.238 Sum_probs=108.9
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH-----
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK----- 729 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~----- 729 (1021)
+.+|.+++|||||+++|++.... ..+...++|.+.........+..+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 65 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA---------------IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKE 65 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE---------------eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHH
Confidence 35789999999999999974211 1122345666666667777788999999999988543
Q ss_pred ---HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 730 ---NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 730 ---~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
.+...++.+|++++|+|+.++......+++..+...+.| +++|+||+|+.+.... ...+..+++
T Consensus 66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~--------~~~~~~~~~---- 132 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKP-VILVVNKVDNIKEEDE--------AAEFYSLGF---- 132 (157)
T ss_pred HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCC-EEEEEECcccCChHHH--------HHHHHhcCC----
Confidence 445667889999999999987777777777888888888 9999999999763221 111222332
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+++++|++++ +++++++++|.+.
T Consensus 133 ~~~~~~Sa~~~-----------~gv~~l~~~l~~~ 156 (157)
T cd01894 133 GEPIPISAEHG-----------RGIGDLLDAILEL 156 (157)
T ss_pred CCeEEEecccC-----------CCHHHHHHHHHhh
Confidence 25789999987 3889999988653
No 221
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.62 E-value=2.6e-15 Score=184.81 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=91.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+..++|+++|++|+|||||+++|+.....+.. ...|.|.++....+.+. +..+.|||||
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-----------------~~~gtT~d~~~~~~~~~----~~~~~liDTa 506 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVN-----------------DLAGTTRDPVDEIVEID----GEDWLFIDTA 506 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccC-----------------CCCCCCcCcceeEEEEC----CCEEEEEECC
Confidence 35689999999999999999999754322211 13455666555556666 6788999999
Q ss_pred CCC---------CcHHH--HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 86 GHV---------DFTIE--VERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~---------~f~~~--~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|+. +|... ...+++.+|++++|+|++++.+.+...+++.+...++|+++|+||+|+..
T Consensus 507 G~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 507 GIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred CcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 964 22221 34567899999999999999999999999988888999999999999864
No 222
>KOG0466|consensus
Probab=99.62 E-value=4.6e-16 Score=159.03 Aligned_cols=245 Identities=26% Similarity=0.324 Sum_probs=174.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEee-cc-------------
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWE-VN------------- 73 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~-~~------------- 73 (1021)
.-||+-+||+.|||||++.++. |. .+-.++.|-||.|||+..+++...- .+
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiS---Gv------------~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~ 102 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAIS---GV------------HTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSF 102 (466)
T ss_pred eeeecceeccccCcceeeeeec---cc------------eEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhcc
Confidence 5799999999999999998872 21 1223567899999999877654321 11
Q ss_pred -------------c------CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-CchhHHHHHHHHhhcCCCEE
Q psy5021 74 -------------K------FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-IQPQTETVWFQSQKYKVPKM 133 (1021)
Q Consensus 74 -------------~------~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-~~~~t~~~~~~~~~~~~p~i 133 (1021)
+ --+.+.|+|+|||.-+...+..+....|+|++++.+++. .++||.+++....-+++..+
T Consensus 103 gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhi 182 (466)
T KOG0466|consen 103 GSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHI 182 (466)
T ss_pred CCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceE
Confidence 0 014688999999999999999999999999999999876 79999999988888887766
Q ss_pred EE-EeCcCCCCCCH-HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHH
Q psy5021 134 IF-VNKMDRIGANY-NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNE 211 (1021)
Q Consensus 134 iv-iNK~D~~~~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (1021)
++ -||+|+...+. .+..++|.
T Consensus 183 iilQNKiDli~e~~A~eq~e~I~--------------------------------------------------------- 205 (466)
T KOG0466|consen 183 IILQNKIDLIKESQALEQHEQIQ--------------------------------------------------------- 205 (466)
T ss_pred EEEechhhhhhHHHHHHHHHHHH---------------------------------------------------------
Confidence 55 69999853221 11111111
Q ss_pred HHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCcccc
Q psy5021 212 LMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNI 291 (1021)
Q Consensus 212 ~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~ 291 (1021)
+|+.+ .. ..-.|++++||.-..+|+.+.++|++.+|-|...
T Consensus 206 ---------------kFi~~-------------t~--ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRd--------- 246 (466)
T KOG0466|consen 206 ---------------KFIQG-------------TV--AEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRD--------- 246 (466)
T ss_pred ---------------HHHhc-------------cc--cCCCceeeehhhhccChHHHHHHHHhcCCCCccc---------
Confidence 11111 00 1235788889999999999999999999999764
Q ss_pred ccCCCceEEEEEEEeecC--------CCceEEEEEEEeeEEecCCEEEeCCC--------ceeeE--eceEEEeecCCee
Q psy5021 292 NLNSNKFVSLVFKIFHDP--------FLGSLSFIRIYSGFIKVGDLVYNSTK--------KVKEK--IFRILRMFANSKK 353 (1021)
Q Consensus 292 ~~~~~p~~~~V~k~~~~~--------~~g~~~~~RV~sG~l~~gd~v~~~~~--------~~~~~--i~~i~~~~g~~~~ 353 (1021)
...|..+.|.+.|... -.|-++-+-++.|.|+.||.+-.-+. +..++ ..+|..+.+. ..
T Consensus 247 --f~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE-~n 323 (466)
T KOG0466|consen 247 --FTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAE-QN 323 (466)
T ss_pred --cCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhh-hc
Confidence 5677788888877432 34668999999999999999975321 11111 2233333333 34
Q ss_pred ccccccCCCEEEE
Q psy5021 354 DINDAHFGDIVVI 366 (1021)
Q Consensus 354 ~v~~a~aGdIv~i 366 (1021)
+++.|.+|-.+++
T Consensus 324 ~L~~AvPGGLIGV 336 (466)
T KOG0466|consen 324 DLQFAVPGGLIGV 336 (466)
T ss_pred cceeecCCceeee
Confidence 5778888887777
No 223
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.62 E-value=4.1e-15 Score=150.44 Aligned_cols=160 Identities=19% Similarity=0.170 Sum_probs=105.1
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.++|++++|||||+++|+...... .+ .... ....|+......+..++..+.+||||||.+|...+..
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~-~~---------~~~~--~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 69 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKY-KG---------LPPS--KITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDK 69 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccc-cC---------Cccc--ccCCccccceEEEEECCEEEEEEECCCChhhHHHHHH
Confidence 4678999999999999998642110 00 0011 1122333344456667889999999999999998888
Q ss_pred HhhhCCEEEEEEECCCCCc-HHHHHHHHHHH----HcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 734 GAAQMDGAILVCSAVDGPM-PQTREHILLAR----QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~----~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
.+..+|++++|+|+++... .+...++..+. ..++| +++++||+|+.+. ...+.+.+.+.......+. ..++
T Consensus 70 ~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~-~~~~~~~~~~~~~~~~~~~--~~~~ 145 (167)
T cd04160 70 YYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDLPDA-LSVEEIKEVFQDKAEEIGR--RDCL 145 (167)
T ss_pred HhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCC-EEEEEEccccccC-CCHHHHHHHhccccccccC--CceE
Confidence 9999999999999986432 22233333222 24778 9999999998652 1123233333333222222 3468
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++||++| +|+++++++|.+
T Consensus 146 ~~~~Sa~~g-----------~gv~e~~~~l~~ 166 (167)
T cd04160 146 VLPVSALEG-----------TGVREGIEWLVE 166 (167)
T ss_pred EEEeeCCCC-----------cCHHHHHHHHhc
Confidence 999999988 488999998853
No 224
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.62 E-value=4.3e-15 Score=148.67 Aligned_cols=107 Identities=19% Similarity=0.184 Sum_probs=80.0
Q ss_pred EEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCcHH
Q psy5021 13 IIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTI 92 (1021)
Q Consensus 13 iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~ 92 (1021)
++|+.|+|||||++++..... .. ...+|+|+......+.+. +..+++|||||+.+|..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~---~~---------------~~~~~~t~~~~~~~~~~~----~~~~~liDtpG~~~~~~ 58 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ---KV---------------GNWPGVTVEKKEGRFKLG----GKEIEIVDLPGTYSLSP 58 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc---cc---------------cCCCCcccccceEEEeeC----CeEEEEEECCCccccCC
Confidence 589999999999999953211 10 013477777777777777 67899999999988764
Q ss_pred H------HHHHhh--ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 93 E------VERSLR--VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 93 ~------~~~~l~--~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
. ...++. .+|++|+|+|+... .+....+.++...++|+++++||+|+..
T Consensus 59 ~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 59 YSEDEKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAE 115 (158)
T ss_pred CChhHHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcc
Confidence 2 344454 89999999999874 3334455667778999999999999854
No 225
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.61 E-value=4.7e-15 Score=148.13 Aligned_cols=101 Identities=18% Similarity=0.155 Sum_probs=70.9
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC-
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH- 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~- 87 (1021)
++|+++|++|+|||||+++|..... . + .....+.|. .. ++|||||.
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~---~----------------------~--~~~~~v~~~----~~--~~iDtpG~~ 48 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYT---L----------------------A--RKTQAVEFN----DK--GDIDTPGEY 48 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCc---c----------------------C--ccceEEEEC----CC--CcccCCccc
Confidence 4799999999999999999842110 0 0 011223443 11 37999996
Q ss_pred ---CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 88 ---VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 88 ---~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
.++..++..+++.+|++|+|+|++++.......++.. ..+.|+++++||+|++..
T Consensus 49 ~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~ 106 (158)
T PRK15467 49 FSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDA 106 (158)
T ss_pred cCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcc
Confidence 4566666777899999999999998865544433332 347899999999998643
No 226
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.61 E-value=8.3e-15 Score=148.26 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=77.5
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-.+|+++|+.++|||||+++|.... .. ++. .|+......+.+. ...+++|||||+
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~--~~------------~~~-------~t~g~~~~~~~~~----~~~~~l~Dt~G~ 63 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQ--SV------------TTI-------PTVGFNVETVTYK----NVKFNVWDVGGQ 63 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCC--Cc------------ccc-------CCcccceEEEEEC----CEEEEEEECCCC
Confidence 4589999999999999999995311 00 000 1111111223334 788999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCc-hhHHHHHHHHh----hcCCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQ-PQTETVWFQSQ----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~-~~t~~~~~~~~----~~~~p~iiviNK~D~~~ 143 (1021)
..|...+..+++.+|++|+|+|+++... ......|.... ..++|+++++||+|+..
T Consensus 64 ~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 64 DKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 9999888899999999999999987432 22233333332 24689999999999864
No 227
>KOG0094|consensus
Probab=99.61 E-value=1e-14 Score=141.05 Aligned_cols=175 Identities=17% Similarity=0.185 Sum_probs=127.3
Q ss_pred chhhhccCCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEE
Q psy5021 638 PLRELFGYSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYA 717 (1021)
Q Consensus 638 P~~e~~~~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~ 717 (1021)
|...+..+...++....-++|-.++|||||++++.... +......+.|+...+....++.....+.
T Consensus 9 ~~~~~~~~~~~~k~~KlVflGdqsVGKTslItRf~yd~--------------fd~~YqATIGiDFlskt~~l~d~~vrLQ 74 (221)
T KOG0094|consen 9 ACQTMATFGAPLKKYKLVFLGDQSVGKTSLITRFMYDK--------------FDNTYQATIGIDFLSKTMYLEDRTVRLQ 74 (221)
T ss_pred HHHhccccCccceEEEEEEEccCccchHHHHHHHHHhh--------------hcccccceeeeEEEEEEEEEcCcEEEEE
Confidence 44445556677888888999999999999999999843 2223334455555555555554456678
Q ss_pred EEecCChhhhHHHHHHHhhhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC--CeEEEEEeeccccchhhHHHHHHHHH
Q psy5021 718 HVDCPGHADYIKNMITGAAQMDGAILVCSAVD-GPMPQTREHILLARQV-GV--PNIVVFLNKADCVQDKELLDLVEMEI 793 (1021)
Q Consensus 718 liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~-g~~~qt~e~l~~~~~~-~i--p~iIvviNK~Dl~~~~~~~~~~~~~~ 793 (1021)
+|||+|+++|......|++++++||+|+|.++ ..+.++..++.-+... |- .-|++|.||.||.+..+. . .++-
T Consensus 75 lWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv-s--~eEg 151 (221)
T KOG0094|consen 75 LWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV-S--IEEG 151 (221)
T ss_pred EEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhh-h--HHHH
Confidence 89999999999999999999999999999886 4567888888766654 33 336778899999974322 1 1222
Q ss_pred HHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 794 RELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 794 ~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
....+.++ +.++.+||+.|. |+..|+..+...+|.+
T Consensus 152 ~~kAkel~-----a~f~etsak~g~-----------NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 152 ERKAKELN-----AEFIETSAKAGE-----------NVKQLFRRIAAALPGM 187 (221)
T ss_pred HHHHHHhC-----cEEEEecccCCC-----------CHHHHHHHHHHhccCc
Confidence 23444443 579999999884 8899999988877654
No 228
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.61 E-value=7.6e-15 Score=151.95 Aligned_cols=113 Identities=20% Similarity=0.125 Sum_probs=80.5
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+-..|+++|+.|+|||||+++|....- .. ...|+......+.+. +..+.++||||
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~--~~-------------------~~~T~~~~~~~i~~~----~~~~~l~D~~G 72 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRL--AQ-------------------HVPTLHPTSEELTIG----NIKFKTFDLGG 72 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC--cc-------------------cCCccCcceEEEEEC----CEEEEEEECCC
Confidence 456789999999999999999953211 00 011333333455666 78899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCch-hHHHHHHHH----hhcCCCEEEEEeCcCCCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQP-QTETVWFQS----QKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~-~t~~~~~~~----~~~~~p~iiviNK~D~~~~ 144 (1021)
+.+|...+..+++.+|++++|+|+++.-.. .....+... ...+.|+++++||+|+...
T Consensus 73 ~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~ 135 (190)
T cd00879 73 HEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA 135 (190)
T ss_pred CHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC
Confidence 999988889999999999999999864221 122222222 2356999999999998643
No 229
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.60 E-value=7.9e-15 Score=150.78 Aligned_cols=114 Identities=18% Similarity=0.066 Sum_probs=80.8
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+-.+|+++|..|+|||||+++|....-. . + ..|.......+.+. ++.++++|||
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~--~------------~-------~~t~~~~~~~~~~~----~~~~~~~D~~ 69 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA--Q------------H-------QPTQHPTSEELAIG----NIKFTTFDLG 69 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc--c------------c-------CCccccceEEEEEC----CEEEEEEECC
Confidence 34578999999999999999999632110 0 0 01222222344555 7889999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCch-hHHHHHHHHh----hcCCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQP-QTETVWFQSQ----KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~-~t~~~~~~~~----~~~~p~iiviNK~D~~~~ 144 (1021)
|+..+...+..+++.+|++|+|+|+++.... .....+..+. ..++|+++++||+|++..
T Consensus 70 G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 133 (184)
T smart00178 70 GHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA 133 (184)
T ss_pred CCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 9999998999999999999999999875321 1222233222 257999999999998643
No 230
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.60 E-value=1.6e-14 Score=144.87 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=76.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.++|||||+++|... ... ++. .|+......+.+. ...+++|||||+..
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~--~~~------------~~~-------pt~g~~~~~~~~~----~~~~~l~D~~G~~~ 56 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLG--EIV------------TTI-------PTIGFNVETVEYK----NISFTVWDVGGQDK 56 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCc------------ccC-------CCCCcceEEEEEC----CEEEEEEECCCCHh
Confidence 5899999999999999998521 110 111 1221111223344 78899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCc-hhHHHHHHHHhh----cCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQ-PQTETVWFQSQK----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~-~~t~~~~~~~~~----~~~p~iiviNK~D~~~ 143 (1021)
|...+..+++.+|++|+|+|+++... .+....|..+.. .+.|+++++||+|+..
T Consensus 57 ~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 57 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 99999999999999999999986421 122333333322 3589999999999864
No 231
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.60 E-value=1.5e-14 Score=146.93 Aligned_cols=159 Identities=27% Similarity=0.323 Sum_probs=113.5
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh---
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY--- 727 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~--- 727 (1021)
.+.++..|.+++|||||+++|++..... .+...+.|.+.....+..++..+.+|||||+.+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 66 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI---------------VSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKV 66 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee---------------ccCCCCCccCceeeEEEECCeeEEEEECCCCccccch
Confidence 3567899999999999999999753211 1122355665555566777888999999996432
Q ss_pred -------H-HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchh-hHHHHHHHHHHHhhh
Q psy5021 728 -------I-KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDK-ELLDLVEMEIRELLT 798 (1021)
Q Consensus 728 -------~-~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~-~~~~~~~~~~~~~l~ 798 (1021)
. ..+...+..+|++++|+|++++...+....+..+...+.| +++++||+|+.+.. ...+.+.+.+.+.+.
T Consensus 67 ~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01895 67 EEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKA-LVIVVNKWDLVEKDSKTMKEFKKEIRRKLP 145 (174)
T ss_pred hccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCC-EEEEEeccccCCccHHHHHHHHHHHHhhcc
Confidence 1 2344567899999999999988777777777777777888 88999999987632 234444455554443
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..+ ..+++++||+++ .++..+++++.+
T Consensus 146 ~~~----~~~~~~~Sa~~~-----------~~i~~~~~~l~~ 172 (174)
T cd01895 146 FLD----YAPIVFISALTG-----------QGVDKLFDAIDE 172 (174)
T ss_pred ccc----CCceEEEeccCC-----------CCHHHHHHHHHH
Confidence 322 357999999987 378888887754
No 232
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.60 E-value=7.9e-15 Score=148.12 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=104.1
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
..+.++|.+++|||||+++|..... ........|. +.....+..++ ..+.+|||||+++|..
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~--------------~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~D~~G~~~~~~ 67 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTF--------------SERQGNTIGV--DFTMKTLEIEGKRVKLQIWDTAGQERFRT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC--------------cccCCCccce--EEEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 5678889999999999999986321 1111122232 33333444444 4678999999999998
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.+...++.+|++++|+|+++....+. ..++..+.. .++| +|+|+||+|+.+..+. ..++...+.+..+.
T Consensus 68 ~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~--- 140 (165)
T cd01864 68 ITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQREV---LFEEACTLAEKNGM--- 140 (165)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECccccccccc---CHHHHHHHHHHcCC---
Confidence 88888999999999999988554333 334444433 2567 8899999998753211 11233344444432
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..++++||++|. |++++++.+.+
T Consensus 141 -~~~~e~Sa~~~~-----------~v~~~~~~l~~ 163 (165)
T cd01864 141 -LAVLETSAKESQ-----------NVEEAFLLMAT 163 (165)
T ss_pred -cEEEEEECCCCC-----------CHHHHHHHHHH
Confidence 468999999873 88899988865
No 233
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.60 E-value=5.2e-15 Score=129.46 Aligned_cols=82 Identities=30% Similarity=0.513 Sum_probs=77.0
Q ss_pred CeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCccc
Q psy5021 852 PFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVER 931 (1021)
Q Consensus 852 p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~ 931 (1021)
||||+|+++|+.. |++++|+|++|++++||++.+.|++. .++|+||++++.++++|.|||+|+++|++++..++++
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~~--~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~ 76 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNKT--QVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISP 76 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCCc--EEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCC
Confidence 7999999999864 89999999999999999999999764 5899999999999999999999999999999999999
Q ss_pred ceEEee
Q psy5021 932 GQVLAK 937 (1021)
Q Consensus 932 G~vl~~ 937 (1021)
|++||+
T Consensus 77 G~vl~~ 82 (82)
T cd04089 77 GFVLCS 82 (82)
T ss_pred CCEEeC
Confidence 999974
No 234
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.60 E-value=2.2e-14 Score=146.25 Aligned_cols=112 Identities=16% Similarity=0.145 Sum_probs=79.7
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
...|+++|..++|||||+++|.. +.. .++. .|+......+.+. ...+.+|||||+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~--~~~------------~~~~-------~t~~~~~~~~~~~----~~~l~l~D~~G~ 67 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKL--GES------------VTTI-------PTIGFNVETVTYK----NISFTVWDVGGQ 67 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCC------------CCcC-------CccccceEEEEEC----CEEEEEEECCCC
Confidence 46799999999999999999952 111 0110 1222222233444 788999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHHHHhh----cCCCEEEEEeCcCCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQSQK----YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~~~~~----~~~p~iiviNK~D~~~~ 144 (1021)
..|...+..+++.+|++|+|+|+++.. .....+.|..+.. .++|+++|+||+|+...
T Consensus 68 ~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 68 DKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred hhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 999999999999999999999998642 2223344444322 36899999999998643
No 235
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.59 E-value=9.7e-15 Score=146.87 Aligned_cols=115 Identities=14% Similarity=0.250 Sum_probs=79.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..++|||||+++|....-. .++ .+.+..+.....+.+...+....+++|||||+.+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~-------------~~~-----~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 63 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT-------------KDY-----KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE 63 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-------------CCC-----CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH
Confidence 5899999999999999999632110 000 1111121111222332224467899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHh---hcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~---~~~~p~iiviNK~D~~ 142 (1021)
|...+..+++.+|++++|+|+++....+....|.... ..++|+++++||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 64 FDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 9999999999999999999998765444444443322 2479999999999984
No 236
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.59 E-value=1.3e-14 Score=149.01 Aligned_cols=114 Identities=19% Similarity=0.209 Sum_probs=77.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|+.|+|||||++++.+.... +.. ...|.+.. ...+.+. ++....+++|||||+..
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~--------------~~~---~t~~~~~~--~~~~~~~-~~~~~~l~l~Dt~G~~~ 64 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFV--------------NTV---PTKGFNTE--KIKVSLG-NSKGITFHFWDVGGQEK 64 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcC--------------CcC---Ccccccee--EEEeecc-CCCceEEEEEECCCcHh
Confidence 4899999999999999999642211 000 00111221 1122221 22367899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhH-----HHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQT-----ETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t-----~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|...+...++.+|++|+|+|+++...... .+++......++|+++++||+|+..
T Consensus 65 ~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 65 LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 99888889999999999999987532222 1222333446799999999999863
No 237
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.59 E-value=1.3e-14 Score=146.41 Aligned_cols=111 Identities=17% Similarity=0.219 Sum_probs=75.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeee-eeEEEeecccCceeEEEEcCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA-SVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~-~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.|+++|++|+|||||+++|+...-... +.+ |+... ...+.+ ++..+.+.+|||||+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~-------------~~~-------t~~~~~~~~~~~--~~~~~~l~i~Dt~g~~ 59 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDD-------------YDP-------TIEDSYRKQIEI--DGEVCLLDILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-------------cCC-------chhhhEEEEEEE--CCEEEEEEEEECCCcc
Confidence 689999999999999999974321100 000 11100 011112 2335789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HH----HhhcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQ----SQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~----~~~~~~p~iiviNK~D~~ 142 (1021)
+|...+...++.+|++++|+|+++........-| .. ....++|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~ 118 (164)
T smart00173 60 EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE 118 (164)
T ss_pred cchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999999999875333222222 22 223478999999999985
No 238
>PRK00089 era GTPase Era; Reviewed
Probab=99.59 E-value=2.4e-14 Score=158.67 Aligned_cols=161 Identities=27% Similarity=0.291 Sum_probs=111.5
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh--
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD-- 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~-- 726 (1021)
.|+..++++|.+|+|||||+|+|++....+..... +.|.+.....+..++..+.|+||||+.+
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~---------------~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP---------------QTTRHRIRGIVTEDDAQIIFVDTPGIHKPK 67 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCC---------------CcccccEEEEEEcCCceEEEEECCCCCCch
Confidence 46778899999999999999999986433222111 1222222222334557899999999633
Q ss_pred ------hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 727 ------YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 727 ------~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
+...+..++..+|++++|+|++++......+.+..+...+.| +++|+||+|+........ ..+..+.+..
T Consensus 68 ~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~p-vilVlNKiDl~~~~~~l~---~~~~~l~~~~ 143 (292)
T PRK00089 68 RALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTP-VILVLNKIDLVKDKEELL---PLLEELSELM 143 (292)
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCC-EEEEEECCcCCCCHHHHH---HHHHHHHhhC
Confidence 234455667899999999999987666667777777777788 889999999984322222 2333333323
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
+ ..+++++||+++ .++++|++.|.+.++
T Consensus 144 ~----~~~i~~iSA~~~-----------~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 144 D----FAEIVPISALKG-----------DNVDELLDVIAKYLP 171 (292)
T ss_pred C----CCeEEEecCCCC-----------CCHHHHHHHHHHhCC
Confidence 3 257899999987 388999999987765
No 239
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.59 E-value=1.2e-14 Score=145.00 Aligned_cols=111 Identities=19% Similarity=0.194 Sum_probs=81.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|++|+|||||+++|......... ..++.|.......+.+. ++.+++|||||+.+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~----~~~~~i~DtpG~~~ 61 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVS-----------------DIAGTTRDVIEESIDIG----GIPVRLIDTAGIRE 61 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEecc-----------------CCCCCccceEEEEEEeC----CEEEEEEECCCcCC
Confidence 6899999999999999999743221111 12345555444555565 77899999999988
Q ss_pred cHHH--------HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 90 FTIE--------VERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~--------~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
+... +...+..+|++++|+|++..........+.. ..+.|+++++||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 62 TEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLP 121 (157)
T ss_pred CcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCC
Confidence 7532 4456788999999999998666666555554 56899999999999863
No 240
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.59 E-value=2.2e-14 Score=144.91 Aligned_cols=113 Identities=20% Similarity=0.175 Sum_probs=80.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..|+|||||+++++...- .. ....|+........+..++....+.+|||||+.+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~--~~------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF--EK------------------KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC------------------CCCCceeeEEEEEEEEECCEEEEEEEEECCCChh
Confidence 689999999999999999973211 00 0112333333333333344468899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh--cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~--~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++|+|+|.+++...+....| +.+.. .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 62 FGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred hccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 988888889999999999999987555444444 33322 279999999999985
No 241
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.59 E-value=1.6e-14 Score=145.42 Aligned_cols=113 Identities=16% Similarity=0.116 Sum_probs=76.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.++|||||+++|+...-... ...|............++....+++|||||+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~--------------------~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~ 62 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSEN--------------------QESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER 62 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC--------------------CCCccceeEEEEEEEECCEEEEEEEEeCCchHH
Confidence 689999999999999999974321110 011222111111222223367899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHhh---cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~~---~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++++|+|+++.-.... ...++.+.. .++|+++++||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 63 YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99888889999999999999986533222 222233333 358899999999985
No 242
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.59 E-value=1.4e-14 Score=145.95 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=79.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|++|+|||||+++|+...-... ..+.++.......+.+. +....+++|||||+..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~~ 61 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQ------------------YKSTIGVDFKTKTIEVD--GKRVKLQIWDTAGQER 61 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC------------------CCCceeeEEEEEEEEEC--CEEEEEEEEECCChHH
Confidence 689999999999999999963221100 11122222222233332 3346899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHhh---cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~~---~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++++|+|+++....+....|. .... .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 62 FRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 9999999999999999999998865554444443 2222 469999999999975
No 243
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.59 E-value=2.8e-14 Score=144.68 Aligned_cols=109 Identities=17% Similarity=0.073 Sum_probs=76.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..++|||||+++|.... . ..+ ..|+......+.+. +..+++|||||+.+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~------------~~~-------~~T~~~~~~~~~~~----~~~i~l~Dt~G~~~ 55 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--F------------MQP-------IPTIGFNVETVEYK----NLKFTIWDVGGKHK 55 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--C------------CCc-------CCcCceeEEEEEEC----CEEEEEEECCCChh
Confidence 47899999999999999996321 0 000 11332222334455 78999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCch-hHHHHHHHHh----hcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQP-QTETVWFQSQ----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~-~t~~~~~~~~----~~~~p~iiviNK~D~~~ 143 (1021)
|...+..+++.+|++++|+|+++.-.. .....+.... ..+.|+++|+||+|+..
T Consensus 56 ~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 56 LRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred cchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 999999999999999999999874211 1222233332 13489999999999864
No 244
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.59 E-value=5.3e-15 Score=148.05 Aligned_cols=146 Identities=23% Similarity=0.254 Sum_probs=102.5
Q ss_pred eeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH------H
Q psy5021 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK------N 730 (1021)
Q Consensus 657 ~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~------~ 730 (1021)
+|.+++|||||+++|++... ......|+|++.....+++++..+.+|||||+.+|.. .
T Consensus 2 ~G~~~~GKssl~~~~~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~ 65 (158)
T cd01879 2 VGNPNVGKTTLFNALTGARQ----------------KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKV 65 (158)
T ss_pred CCCCCCCHHHHHHHHhcCcc----------------cccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHH
Confidence 58899999999999987421 1122357788777777888888999999999987653 2
Q ss_pred HHHHh--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 731 MITGA--AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 731 ~~~~~--~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
+..++ ..+|++++|+|+.+.. +....+..+...++| +|+++||+|+.+.... . .+...+.+.++ .+
T Consensus 66 ~~~~~~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~-~---~~~~~~~~~~~-----~~ 133 (158)
T cd01879 66 ARDFLLGEKPDLIVNVVDATNLE--RNLYLTLQLLELGLP-VVVALNMIDEAEKRGI-K---IDLDKLSELLG-----VP 133 (158)
T ss_pred HHHHhcCCCCcEEEEEeeCCcch--hHHHHHHHHHHcCCC-EEEEEehhhhcccccc-h---hhHHHHHHhhC-----CC
Confidence 33444 3899999999998732 333444556667888 8899999999763221 1 12223333333 46
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++||.++ ++++.+++.|.+.
T Consensus 134 ~~~iSa~~~-----------~~~~~l~~~l~~~ 155 (158)
T cd01879 134 VVPTSARKG-----------EGIDELKDAIAEL 155 (158)
T ss_pred eEEEEccCC-----------CCHHHHHHHHHHH
Confidence 899999987 3788888888653
No 245
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.58 E-value=2.9e-14 Score=144.94 Aligned_cols=111 Identities=18% Similarity=0.158 Sum_probs=76.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeee--eEEEeecccCceeEEEEcCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSAS--VSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~--~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+|+++|++|+|||||+++|+...-.... ..|+.... ..+.+. +....+++|||||+
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~--------------------~~t~~~~~~~~~~~~~--~~~~~~~~~D~~g~ 59 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQY--------------------KATIGADFLTKEVTVD--DKLVTLQIWDTAGQ 59 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc--------------------CCccceEEEEEEEEEC--CEEEEEEEEeCCCh
Confidence 6899999999999999999743211000 01111111 122232 33567889999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-----Hh---hcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-----SQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-----~~---~~~~p~iiviNK~D~~ 142 (1021)
.+|.......++.+|++|+++|+.+....+....|.. +. ..++|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 60 ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred HHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 9999999999999999999999987644333333322 11 1278999999999985
No 246
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.58 E-value=1.9e-14 Score=144.63 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=80.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
++|+++|++++|||||+++|+...-... ...+.+.+.....+.+. +....+++|||||+.
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~l~~~D~~G~~ 60 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQ------------------YQATIGIDFLSKTMYLE--DKTVRLQLWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc------------------CCCceeeeEEEEEEEEC--CEEEEEEEEECCCcH
Confidence 3799999999999999999974322111 12233333333333333 334679999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH-hhc--CCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS-QKY--KVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~-~~~--~~p~iiviNK~D~~ 142 (1021)
.|...+...++.+|++++|+|+++....+....| ... ... +.|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 61 RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 9999999999999999999999876544443333 332 223 48999999999984
No 247
>PRK04213 GTP-binding protein; Provisional
Probab=99.58 E-value=2.2e-14 Score=149.92 Aligned_cols=127 Identities=19% Similarity=0.246 Sum_probs=81.6
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+..+..+|+++|+.|+|||||+++|.... .. .+..+|.|.... .+.+. .+++||
T Consensus 5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~---~~---------------~~~~~~~t~~~~--~~~~~------~~~l~D 58 (201)
T PRK04213 5 RPDRKPEIVFVGRSNVGKSTLVRELTGKK---VR---------------VGKRPGVTRKPN--HYDWG------DFILTD 58 (201)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCC---Cc---------------cCCCCceeeCce--EEeec------ceEEEe
Confidence 34456789999999999999999995321 11 012335555432 22222 589999
Q ss_pred CCCCCC-----------cHHHHHH----HhhccCeEEEEEeCCCC-----------CchhHHHHHHHHhhcCCCEEEEEe
Q psy5021 84 TPGHVD-----------FTIEVER----SLRVLDGAVIIICASSG-----------IQPQTETVWFQSQKYKVPKMIFVN 137 (1021)
Q Consensus 84 tPG~~~-----------f~~~~~~----~l~~~D~~ilvvda~~g-----------~~~~t~~~~~~~~~~~~p~iiviN 137 (1021)
|||+.+ |...+.. ++..+|++++|+|+... ....+.+++..+...++|+++|+|
T Consensus 59 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~N 138 (201)
T PRK04213 59 LPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVN 138 (201)
T ss_pred CCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEE
Confidence 999532 3222222 34457899999999753 223456777777778999999999
Q ss_pred CcCCCCCCHHHHHHHHHHHh
Q psy5021 138 KMDRIGANYNNCIIDIKKKF 157 (1021)
Q Consensus 138 K~D~~~~~~~~~~~~i~~~l 157 (1021)
|+|+...+ .+..+++.+.+
T Consensus 139 K~Dl~~~~-~~~~~~~~~~~ 157 (201)
T PRK04213 139 KMDKIKNR-DEVLDEIAERL 157 (201)
T ss_pred CccccCcH-HHHHHHHHHHh
Confidence 99986443 23334444433
No 248
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=4.1e-14 Score=147.76 Aligned_cols=113 Identities=18% Similarity=0.174 Sum_probs=78.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc-cCceeEEEEcCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN-KFKYMINIIDTPGHV 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~-~~~~~i~liDtPG~~ 88 (1021)
+|+++|..|+|||||+++|+...- .. .+ ..|+......-.+..+ +..+.+.+|||||+.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~--~~-----------~~-------~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~ 61 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIF--SQ-----------HY-------KATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CC-----------CC-------CCceeEEEEEEEEEECCCCEEEEEEEECCCch
Confidence 689999999999999999974211 00 00 1133222111111212 446789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-Hh-------hcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-SQ-------KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~~-------~~~~p~iiviNK~D~~ 142 (1021)
.|...+..+++.+|++|+|+|.++....+....|.. +. ..++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 62 RFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred hhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 999999999999999999999987654444333421 11 2578999999999985
No 249
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.58 E-value=2.3e-14 Score=148.63 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=80.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeee--eEEEeecccCceeEEEEcCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSAS--VSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~--~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.|+++|..++|||||+.++.... ... +...|+.... ..+.+ ++..+.+++|||+|+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~--f~~------------------~~~~Ti~~~~~~~~i~~--~~~~v~l~iwDtaGq 59 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT--FCE------------------ACKSGVGVDFKIKTVEL--RGKKIRLQIWDTAGQ 59 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--CCC------------------cCCCcceeEEEEEEEEE--CCEEEEEEEEeCCCc
Confidence 48899999999999999996321 110 0012322221 22333 344688999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHH-h---hcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQS-Q---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~-~---~~~~p~iiviNK~D~~ 142 (1021)
..|...+..+++.+|++|+|+|.++....+....|... . ..++|+++|.||+|+.
T Consensus 60 e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 60 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 99999999999999999999999987655555555432 2 2468999999999985
No 250
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.58 E-value=3.4e-14 Score=145.49 Aligned_cols=112 Identities=15% Similarity=0.103 Sum_probs=79.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
..+|+++|..++|||||+.+|.. +.... + ..|+......+.+. +..+++|||||+
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~--~~~~~------------~-------~pt~g~~~~~~~~~----~~~~~i~D~~Gq 71 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKL--GEIVT------------T-------IPTIGFNVETVEYK----NISFTVWDVGGQ 71 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHcc--CCCcc------------c-------cCCcceeEEEEEEC----CEEEEEEECCCC
Confidence 45799999999999999999852 11100 0 01222222234455 789999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHHHHh----hcCCCEEEEEeCcCCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQ-TETVWFQSQ----KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~~~~----~~~~p~iiviNK~D~~~~ 144 (1021)
..|...+..+++.+|++|+|+|+++..... ....+.... ..++|+++++||+|++..
T Consensus 72 ~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 999999999999999999999998753221 222233222 147899999999998754
No 251
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.58 E-value=1.7e-14 Score=145.69 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=76.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-+|+++|..|+|||||+++|+...-. . .+.+ .-|++... ..+.. ++....+.+|||||+.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~--~-----------~~~~---t~~~~~~~--~~~~~--~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFT--S-----------AFVS---TVGIDFKV--KTVFR--NDKRVKLQIWDTAGQE 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--C-----------CCCC---ceeeEEEE--EEEEE--CCEEEEEEEEECCChH
Confidence 47999999999999999999632210 0 0000 00111111 11211 2235789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
+|...+...++.+|++++|+|.++....+...-| +.+.. .+.|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 62 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME 119 (165)
T ss_pred HHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence 9999999999999999999999875333322323 23322 368999999999985
No 252
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.58 E-value=1.9e-14 Score=144.68 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=100.7
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.++|.+++|||||+++|++..... .....+.|.+. ..+...+..+.+|||||+++|...+..
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~-------------~~~~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 64 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQS-------------QIIVPTVGFNV----ESFEKGNLSFTAFDMSGQGKYRGLWEH 64 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCc-------------ceecCccccce----EEEEECCEEEEEEECCCCHhhHHHHHH
Confidence 3578899999999999999742111 01112223322 234456788999999999999999999
Q ss_pred HhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 734 GAAQMDGAILVCSAVDGPM-PQTREHILLARQ------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
++..+|++|+|+|+++... ......+..+.. .++| +++|+||+|+.+... .. ++...+.........
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~-~~----~~~~~l~~~~~~~~~ 138 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDALT-AV----KITQLLGLENIKDKP 138 (162)
T ss_pred HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCCCC-HH----HHHHHhCCccccCce
Confidence 9999999999999987543 222333333222 3677 999999999875211 11 222222111111223
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+++++||++| .|+++++++|.+
T Consensus 139 ~~~~~~Sa~~g-----------~gv~~~~~~l~~ 161 (162)
T cd04157 139 WHIFASNALTG-----------EGLDEGVQWLQA 161 (162)
T ss_pred EEEEEeeCCCC-----------CchHHHHHHHhc
Confidence 56899999988 388999998854
No 253
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.58 E-value=2.3e-14 Score=145.87 Aligned_cols=155 Identities=21% Similarity=0.147 Sum_probs=105.3
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.....++|.+++|||||+++|++.... ..+.+.|. ....+..++..+.+|||||+++|..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~---------------~~~~t~g~----~~~~~~~~~~~l~l~D~~G~~~~~~ 73 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDID---------------TISPTLGF----QIKTLEYEGYKLNIWDVGGQKTLRP 73 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC---------------CcCCcccc----ceEEEEECCEEEEEEECCCCHHHHH
Confidence 4467789999999999999999974210 01122232 2223444578899999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHH----HHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLA----RQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~----~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..++..+|++++|+|+++... ....+++..+ ...++| ++|++||+|+.+.. . .+++.+.++......
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~-~----~~~~~~~~~~~~~~~ 147 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGAT-LLILANKQDLPGAL-S----EEEIREALELDKISS 147 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcccccCC-C----HHHHHHHhCccccCC
Confidence 88888999999999999987532 2233333322 124667 99999999987522 1 123344443332333
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..++++++||++|. |+++++++|.+
T Consensus 148 ~~~~~~~~Sa~~g~-----------gi~~l~~~l~~ 172 (173)
T cd04154 148 HHWRIQPCSAVTGE-----------GLLQGIDWLVD 172 (173)
T ss_pred CceEEEeccCCCCc-----------CHHHHHHHHhc
Confidence 45789999999883 88999988753
No 254
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.58 E-value=1.7e-14 Score=145.02 Aligned_cols=151 Identities=15% Similarity=0.101 Sum_probs=101.2
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.++|.+++|||||+++++.... ........+.++......+......+.+|||||+++|...+..
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 68 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDGY--------------EPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHAS 68 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC--------------CCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHH
Confidence 56789999999999999987431 1111112233332222333333456789999999999999999
Q ss_pred HhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEE
Q psy5021 734 GAAQMDGAILVCSAVDGPMPQT-REHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIV 810 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii 810 (1021)
+++.+|++|+|+|++++...+. .+++..+... ++| +++++||+|+... . ..+..++.+.. +++++
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~-~-----~~~~~~~~~~~-----~~~~~ 136 (161)
T cd04124 69 YYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIP-CIVVANKIDLDPS-V-----TQKKFNFAEKH-----NLPLY 136 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEECccCchh-H-----HHHHHHHHHHc-----CCeEE
Confidence 9999999999999987654333 3444455444 677 8999999998531 1 11222233322 25789
Q ss_pred EecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 811 IGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 811 ~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++||++|. |++++++.+.+.
T Consensus 137 ~~Sa~~~~-----------gv~~l~~~l~~~ 156 (161)
T cd04124 137 YVSAADGT-----------NVVKLFQDAIKL 156 (161)
T ss_pred EEeCCCCC-----------CHHHHHHHHHHH
Confidence 99999873 888888888654
No 255
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.58 E-value=2.2e-14 Score=145.27 Aligned_cols=116 Identities=19% Similarity=0.194 Sum_probs=80.3
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
..-+|+++|++|+|||||+++++...-.... + ...|.+..... +.+ ++....+++|||||
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~-----------~-----~t~~~~~~~~~--~~~--~~~~~~~~i~Dt~G 62 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------D-----LTIGVEFGARM--ITI--DGKQIKLQIWDTAG 62 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC-----------C-----CccceeEEEEE--EEE--CCEEEEEEEEECCC
Confidence 3568999999999999999999642211110 0 01122222222 222 23356899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHhh---cCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~~---~~~p~iiviNK~D~~ 142 (1021)
+..|......+++.+|++|+|+|+++....+....|. .+.. .++|+++++||+|+.
T Consensus 63 ~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 63 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred cHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 9999998999999999999999999755444444443 2222 478999999999985
No 256
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.57 E-value=2.4e-14 Score=144.78 Aligned_cols=115 Identities=20% Similarity=0.167 Sum_probs=79.4
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+.+|+++|+.++|||||+++|.... ... ++ ..|+...........++..+.+.+|||||+
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~--~~~-----------~~-------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 61 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKK--FMA-----------DC-------PHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ 61 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC--CCC-----------CC-------CcccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 3689999999999999999996321 111 00 012211111111222334678999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHh---hcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~---~~~~p~iiviNK~D~~ 142 (1021)
..|...+...++.+|++|+|+|.++....+....|. ... ..+.|++++.||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 62 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999999999999999999999999865444444443 222 3468899999999985
No 257
>PTZ00369 Ras-like protein; Provisional
Probab=99.57 E-value=2.1e-14 Score=148.49 Aligned_cols=113 Identities=17% Similarity=0.200 Sum_probs=77.8
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeee-eEEEeecccCceeEEEEcCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSAS-VSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~-~~~~~~~~~~~~~i~liDtPG 86 (1021)
.-+|+++|+.|+|||||+++++...-. . .+. .|+.... ..+.. ++..+.+++|||||
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~-----------~~~-------~t~~~~~~~~~~~--~~~~~~l~i~Dt~G 62 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI--D-----------EYD-------PTIEDSYRKQCVI--DEETCLLDILDTAG 62 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--c-----------CcC-------CchhhEEEEEEEE--CCEEEEEEEEeCCC
Confidence 458999999999999999999742210 0 000 0111111 11111 23367899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HH----hhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~----~~~~~p~iiviNK~D~~ 142 (1021)
+.+|...+..+++.+|++|+|+|+++.........|. .. ...++|+++++||+|+.
T Consensus 63 ~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 63 QEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred CccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999999999999764433333332 22 23478999999999985
No 258
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.57 E-value=1.2e-14 Score=127.66 Aligned_cols=83 Identities=39% Similarity=0.711 Sum_probs=78.4
Q ss_pred eeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccc
Q psy5021 853 FLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERG 932 (1021)
Q Consensus 853 ~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G 932 (1021)
|||+|+++|+++|.|++++|+|++|++++||++.+.|.+. .++|+||+.++.++++|.|||+|++.|++++..++++|
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~--~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G 78 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGE--ETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERG 78 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCc--eEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCc
Confidence 6899999999999999999999999999999999999653 58999999999999999999999999999988999999
Q ss_pred eEEee
Q psy5021 933 QVLAK 937 (1021)
Q Consensus 933 ~vl~~ 937 (1021)
+++|+
T Consensus 79 ~vl~~ 83 (83)
T cd03696 79 DVLSS 83 (83)
T ss_pred cEEcC
Confidence 99974
No 259
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.57 E-value=2.2e-14 Score=145.57 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=98.2
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe-EEEEEecCChhh-----
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK-HYAHVDCPGHAD----- 726 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~-~i~liDtpG~~~----- 726 (1021)
.++++|.+++|||||+++|++....... ..+.|.+.....+...+. .+.||||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~----------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIAD----------------YPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccC----------------CCccccCCcceEEEcCCCCeEEEEecCcccCccccc
Confidence 3688999999999999999974321111 113344444444555565 899999999732
Q ss_pred --hHHHHHHHhhhCCEEEEEEECCCC-Cc-HHHHHHHHHHHHc-----CCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 727 --YIKNMITGAAQMDGAILVCSAVDG-PM-PQTREHILLARQV-----GVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 727 --~~~~~~~~~~~aD~ailVvDa~~g-~~-~qt~e~l~~~~~~-----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
+...+...+..+|++++|+|+++. .. .+...+...+... +.| +++|+||+|+.+.... . ..+..+.
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~-~---~~~~~~~ 140 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKP-RIVVLNKIDLLDEEEL-F---ELLKELL 140 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccc-cEEEEEchhcCCchhh-H---HHHHHHH
Confidence 334445556779999999999986 22 2223333334332 566 8889999998763222 1 2223333
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
... ...+++++||+++ .+++.++++|.+.
T Consensus 141 ~~~----~~~~~~~~Sa~~~-----------~gi~~l~~~i~~~ 169 (170)
T cd01898 141 KEL----WGKPVFPISALTG-----------EGLDELLRKLAEL 169 (170)
T ss_pred hhC----CCCCEEEEecCCC-----------CCHHHHHHHHHhh
Confidence 221 1356899999987 3888999888653
No 260
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.57 E-value=3e-14 Score=143.97 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=78.2
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+.+|+++|..|+|||||+++++...-... ....++.......+.+. +....+++|||||+
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~------------------~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~G~ 61 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTES------------------YISTIGVDFKIRTIELD--GKTIKLQIWDTAGQ 61 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC------------------CCCccceeEEEEEEEEC--CEEEEEEEEECCCc
Confidence 46899999999999999999963211100 01111222111222222 33578999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
.+|...+...++.+|++|+|+|+++.........| ..... .++|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 62 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred HhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence 99999999999999999999999875333322223 22222 468999999999975
No 261
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.57 E-value=1.4e-14 Score=128.49 Aligned_cols=83 Identities=30% Similarity=0.547 Sum_probs=76.6
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCc---eeeEeceEEEeecCCeeccccccCCCEEEEecCCcccc
Q psy5021 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKK---VKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESST 374 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~ 374 (1021)
|.++|||+.+|++.|+++|+|||+|+|++||.|++...+ ..+++.+++.++|.+..+++++.||||+++.|++++.+
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~~~ 80 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDITI 80 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCCcc
Confidence 478999999999999999999999999999999976653 35789999999999999999999999999999999999
Q ss_pred CCeecc
Q psy5021 375 GDTLCS 380 (1021)
Q Consensus 375 gdtl~~ 380 (1021)
||||++
T Consensus 81 Gdtl~~ 86 (86)
T cd03691 81 GDTICD 86 (86)
T ss_pred cceecC
Confidence 999963
No 262
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.57 E-value=6.5e-14 Score=140.63 Aligned_cols=111 Identities=16% Similarity=0.228 Sum_probs=75.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeee-eeEEEeecccCceeEEEEcCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA-SVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~-~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
+|+++|.+|+|||||+++|+...-. . .+.+ |+... ...+.+. +..+.+++|||||+.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~--~-----------~~~~-------t~~~~~~~~~~~~--~~~~~~~i~Dt~G~~ 60 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFV--D-----------EYDP-------TIEDSYRKQVVID--GETCLLDILDTAGQE 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--C-----------CcCC-------cchheEEEEEEEC--CEEEEEEEEECCCCc
Confidence 6899999999999999999742211 0 0000 11110 1112222 235678999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HHHHH----hhcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTET-VWFQS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~~~~----~~~~~p~iiviNK~D~~ 142 (1021)
+|...+..+++.+|++++|+|.++....+... .+... ...++|+++++||+|+.
T Consensus 61 ~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 61 EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred chHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99999999999999999999998743323222 22222 23578999999999985
No 263
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.57 E-value=4.5e-14 Score=144.58 Aligned_cols=148 Identities=22% Similarity=0.239 Sum_probs=104.9
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh----
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH---- 724 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~---- 724 (1021)
.+...++++|.+++|||||+|+|++... ........|.|.+.....+ + ..+.||||||+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~--------------~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~ 78 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKK--------------LARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAK 78 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCC--------------cccccCCCCcceEEEEEEe--C-CcEEEEeCCCCcccc
Confidence 4557889999999999999999997420 0011123355665544333 2 36899999995
Q ss_pred ------hhhHHHHHHHhh---hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHH
Q psy5021 725 ------ADYIKNMITGAA---QMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRE 795 (1021)
Q Consensus 725 ------~~~~~~~~~~~~---~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~ 795 (1021)
.+|...+..+++ .+|++++|+|++.+...++.+++.++...++| +++++||+|+... ...+...+++++
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~-~~~~~~~~~i~~ 156 (179)
T TIGR03598 79 VSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIP-VLIVLTKADKLKK-SELNKQLKKIKK 156 (179)
T ss_pred CChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCCH-HHHHHHHHHHHH
Confidence 334444444443 46899999999998888888888888888999 8899999999753 233445566666
Q ss_pred hhhccccCCCceEEEEecccccc
Q psy5021 796 LLTEYDFDGENTKIVIGSALLAL 818 (1021)
Q Consensus 796 ~l~~~~~~~~~~~ii~iSa~~~~ 818 (1021)
.++..+. +.+++++||++|.
T Consensus 157 ~l~~~~~---~~~v~~~Sa~~g~ 176 (179)
T TIGR03598 157 ALKKDAD---DPSVQLFSSLKKT 176 (179)
T ss_pred HHhhccC---CCceEEEECCCCC
Confidence 6665432 3579999999874
No 264
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.57 E-value=4.4e-14 Score=141.97 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=78.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.|+|||||+++|+........ +...+.+.... .+.+. +....+.+|||||+..
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~--~~~~~--~~~~~~~l~D~~g~~~ 61 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDL----------------AATIGVDFKVK--TLTVD--GKKVKLAIWDTAGQER 61 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccc----------------CCcccceEEEE--EEEEC--CEEEEEEEEECCCchh
Confidence 6899999999999999999742211100 01112222222 22222 2357899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-----HHhhcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-----QSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-----~~~~~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++++|+|+++....+....|. .....++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 62 FRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred hhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 9988888999999999999998765444433342 2234578999999999985
No 265
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.57 E-value=7.5e-14 Score=140.61 Aligned_cols=114 Identities=20% Similarity=0.158 Sum_probs=79.8
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-+.|+++|++|+|||||+++|+...-.... . ....+.......+... +..+.+|||||+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~-----~------------~~~~~~~~~~~~~~~~----~~~~~liDtpG~ 61 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVS-----P------------KPQTTRNRIRGIYTDD----DAQIIFVDTPGI 61 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEecc-----C------------CCCceeceEEEEEEcC----CeEEEEEECCCC
Confidence 467999999999999999999743211110 0 0011111111112222 578999999998
Q ss_pred CCcHH--------HHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 88 VDFTI--------EVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~--------~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
.+... .....+..+|++++|+|+++........+++.+...+.|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 62 HKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred CcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 65432 34556889999999999998866666677777777789999999999985
No 266
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.57 E-value=4.5e-14 Score=141.05 Aligned_cols=110 Identities=21% Similarity=0.169 Sum_probs=77.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCc
Q psy5021 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDF 90 (1021)
Q Consensus 11 i~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f 90 (1021)
|+++|+.|+|||||+++|....-. .++. .|+......+.+. ...+.+|||||+..|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~-------------~~~~-------~t~~~~~~~~~~~----~~~~~~~D~~g~~~~ 57 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS-------------EDTI-------PTVGFNMRKVTKG----NVTLKVWDLGGQPRF 57 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC-------------cCcc-------CCCCcceEEEEEC----CEEEEEEECCCCHhH
Confidence 789999999999999999532110 1111 1222222233444 578999999999999
Q ss_pred HHHHHHHhhccCeEEEEEeCCCCCc-hhHHHHHHHHh----hcCCCEEEEEeCcCCCCC
Q psy5021 91 TIEVERSLRVLDGAVIIICASSGIQ-PQTETVWFQSQ----KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 91 ~~~~~~~l~~~D~~ilvvda~~g~~-~~t~~~~~~~~----~~~~p~iiviNK~D~~~~ 144 (1021)
...+..+++.+|++++|+|+++... .+....|..+. ..++|+++++||+|+...
T Consensus 58 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 58 RSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 9999999999999999999986432 22233344332 257899999999998643
No 267
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.57 E-value=3.8e-14 Score=142.69 Aligned_cols=112 Identities=20% Similarity=0.156 Sum_probs=75.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeee-eeEEEeecccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA-SVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~-~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.+|+++|.+|+|||||++++....- .. ++.+ |+... ...+.. ++....+.+|||||+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~-----------~~~~-------t~~~~~~~~~~~--~~~~~~l~i~Dt~G~ 59 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VE-----------KYDP-------TIEDSYRKQIEV--DGQQCMLEILDTAGT 59 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--Cc-----------ccCC-------chhhhEEEEEEE--CCEEEEEEEEECCCc
Confidence 4799999999999999999973221 10 0000 11100 011112 233577889999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHH-HHHHh----hcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETV-WFQSQ----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~-~~~~~----~~~~p~iiviNK~D~~ 142 (1021)
.+|...+..+++.+|++++|+|.++......... +..+. ..++|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 60 EQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred cccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999999999987533322222 23332 2468999999999985
No 268
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.57 E-value=5.5e-14 Score=141.68 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=78.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCc
Q psy5021 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDF 90 (1021)
Q Consensus 11 i~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f 90 (1021)
|+++|..|+|||||+++|...... .++ ..|+......+.+. +..+.+|||||+.+|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~-------------~~~-------~pt~g~~~~~i~~~----~~~l~i~Dt~G~~~~ 57 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL-------------ESV-------VPTTGFNSVAIPTQ----DAIMELLEIGGSQNL 57 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc-------------ccc-------cccCCcceEEEeeC----CeEEEEEECCCCcch
Confidence 789999999999999999632110 000 01222222334444 789999999999999
Q ss_pred HHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHHHHh--hcCCCEEEEEeCcCCCCC
Q psy5021 91 TIEVERSLRVLDGAVIIICASSGIQPQ-TETVWFQSQ--KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 91 ~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~~~~--~~~~p~iiviNK~D~~~~ 144 (1021)
...+..+++.+|++|+|+|+++..... .+..+..+. ..++|+++|+||+|+...
T Consensus 58 ~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 58 RKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 999999999999999999998754222 222233332 257999999999998654
No 269
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.57 E-value=3.5e-14 Score=143.70 Aligned_cols=116 Identities=20% Similarity=0.166 Sum_probs=79.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
...+|+++|.+|+|||||++++....- .. . ....++.......+.+. +..+.+.+|||||
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f--~~------~----------~~~t~~~~~~~~~~~~~--~~~~~l~l~D~~g 61 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSF--NP------S----------FISTIGIDFKIRTIELD--GKKIKLQIWDTAG 61 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcC--Cc------c----------cccCccceEEEEEEEEC--CEEEEEEEEeCCc
Confidence 467899999999999999999964211 00 0 00111111111222333 3357899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-Hh---hcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-SQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~~---~~~~p~iiviNK~D~~ 142 (1021)
+.+|.......++.+|++|+|+|++++...+...-|.. .. ..+.|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 121 (167)
T cd01867 62 QERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME 121 (167)
T ss_pred hHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 99999989899999999999999987654433333332 22 2468999999999986
No 270
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.56 E-value=3.5e-14 Score=143.51 Aligned_cols=113 Identities=13% Similarity=0.150 Sum_probs=76.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|++++|||||+++|+...-.. +....++.+.....+.+ ++....+++|||||+.+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~------------------~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~ 61 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS------------------KYLPTIGIDYGVKKVSV--RNKEVRVNFFDLSGHPE 61 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC------------------CCCCccceeEEEEEEEE--CCeEEEEEEEECCccHH
Confidence 68999999999999999997422110 00111111111112222 23368899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHh----h----cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQ----K----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~----~----~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++|+|+|.++....+....|. .+. . .+.|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 62 YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 9988888999999999999998764433333332 221 1 468999999999985
No 271
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.56 E-value=3.7e-14 Score=142.34 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=74.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCc
Q psy5021 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDF 90 (1021)
Q Consensus 11 i~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f 90 (1021)
|+++|..|+|||||+++|....-. . .. ...|.++ ..+.+. ..+.+++|||||+..|
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~--~------------~~---~t~~~~~----~~~~~~---~~~~l~i~D~~G~~~~ 57 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELV--T------------TI---PTVGFNV----EMLQLE---KHLSLTVWDVGGQEKM 57 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcc--c------------cc---CccCcce----EEEEeC---CceEEEEEECCCCHhH
Confidence 789999999999999999632210 0 00 0111121 112222 2578999999999999
Q ss_pred HHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHHHH----hhcCCCEEEEEeCcCCCC
Q psy5021 91 TIEVERSLRVLDGAVIIICASSGIQPQ-TETVWFQS----QKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 91 ~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~~~----~~~~~p~iiviNK~D~~~ 143 (1021)
...+...++.+|++|+|+|+++..... ....+... ...++|+++|+||+|+..
T Consensus 58 ~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 58 RTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 988888999999999999998753211 12222222 125799999999999864
No 272
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.56 E-value=6.3e-14 Score=146.82 Aligned_cols=117 Identities=13% Similarity=0.074 Sum_probs=75.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+.+.+|+|+|++|+|||||+++|+....... ...+.|+......+.+.. .+.+.+||||
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~------------------~~~~~t~~~~~~~~~~~~---~~~~~i~Dt~ 97 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAE------------------DQLFATLDPTTRRLRLPD---GREVLLTDTV 97 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccC------------------CccceeccceeEEEEecC---CceEEEeCCC
Confidence 3467999999999999999999974321100 011224443334444441 3489999999
Q ss_pred CCCCc-HH-------HHHHHhhccCeEEEEEeCCCCCchhHHHHH----HHHhhcCCCEEEEEeCcCCCC
Q psy5021 86 GHVDF-TI-------EVERSLRVLDGAVIIICASSGIQPQTETVW----FQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f-~~-------~~~~~l~~~D~~ilvvda~~g~~~~t~~~~----~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|+.+. .. .....+..+|++++|+|++++........| +.+...++|+++|+||+|+..
T Consensus 98 G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 98 GFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred ccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 98442 11 122335689999999999987544433222 333334689999999999854
No 273
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.56 E-value=5.3e-14 Score=144.30 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=77.6
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
...|+++|..++|||||+.++.. +... ++. .|+......+.+. ++.+++|||||+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~--~~~~------------~~~-------~T~~~~~~~~~~~----~~~~~l~D~~G~ 71 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKL--GEVV------------TTI-------PTIGFNVETVEYK----NLKFTMWDVGGQ 71 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCcc------------ccC-------CccccceEEEEEC----CEEEEEEECCCC
Confidence 35799999999999999999852 1110 000 1222222233444 789999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCc-hhHHHHHHHHh-h---cCCCEEEEEeCcCCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQ-PQTETVWFQSQ-K---YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~-~~t~~~~~~~~-~---~~~p~iiviNK~D~~~~ 144 (1021)
..|...+..+++.+|++|+|+|+++.-. ......|.... . .+.|+++|+||.|++..
T Consensus 72 ~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 133 (182)
T PTZ00133 72 DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA 133 (182)
T ss_pred HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence 9999999999999999999999986321 11222333222 1 36899999999998653
No 274
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.56 E-value=4.2e-14 Score=142.61 Aligned_cols=112 Identities=21% Similarity=0.225 Sum_probs=76.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..|+|||||+++++. +.... ++ ..|+.... ...+..++..+.+++|||||+..
T Consensus 3 ki~~~G~~~~GKTsli~~~~~--~~~~~-----------~~-------~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 61 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQ--GIFVE-----------KY-------DPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQ 61 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh--CCCCc-----------cc-------CCcchheE-EEEEEECCEEEEEEEEECCCccc
Confidence 689999999999999999973 21111 00 01221111 11122233467889999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHH----hhcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~----~~~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++++|+|.++....+.. ..+... ...++|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 62 FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred chhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 999999999999999999998865433322 222322 23579999999999985
No 275
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.56 E-value=4.4e-14 Score=142.64 Aligned_cols=115 Identities=18% Similarity=0.149 Sum_probs=78.4
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
..+|+++|.+++|||||+++|+...-... ..+.++.......+.+. +....+.+|||||+
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~--~~~~~~~l~D~~g~ 62 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLD------------------SKSTIGVEFATRSIQID--GKTIKAQIWDTAGQ 62 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC------------------CCCccceEEEEEEEEEC--CEEEEEEEEeCCCh
Confidence 46899999999999999999963221100 01112222222223332 33467999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
..|.......++.+|++|+|+|+++....+...-| ..+. ..++|+++++||.|+.
T Consensus 63 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 63 ERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99998889999999999999999865443333333 2222 2368999999999975
No 276
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.56 E-value=4.9e-14 Score=142.30 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=76.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|..|+|||||+++++... ... .+.... + ..........+. ...+++|||||+.+
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~--f~~--------~~~~t~------~-~~~~~~~~~~~~----~~~l~i~Dt~G~~~ 61 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGT--FRE--------SYIPTI------E-DTYRQVISCSKN----ICTLQITDTTGSHQ 61 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC--------CcCCcc------h-heEEEEEEECCE----EEEEEEEECCCCCc
Confidence 58999999999999999997321 110 000000 0 000111122222 67899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHhh------cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQK------YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~~------~~~p~iiviNK~D~~ 142 (1021)
|......+++.+|++|+|+|.++...... ...|..+.. .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 62 FPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred chHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 99888889999999999999987654433 333333332 468999999999985
No 277
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=4.7e-14 Score=156.80 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=83.0
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
+.-+-.|+|+|.+|||||||+++|......+. + ..+.|+.+....+.+.. ...+.++||
T Consensus 155 lk~~adVglVG~PNaGKSTLln~ls~a~~~va------------~------ypfTT~~p~~G~v~~~~---~~~~~i~D~ 213 (335)
T PRK12299 155 LKLLADVGLVGLPNAGKSTLISAVSAAKPKIA------------D------YPFTTLHPNLGVVRVDD---YKSFVIADI 213 (335)
T ss_pred EcccCCEEEEcCCCCCHHHHHHHHHcCCCccC------------C------CCCceeCceEEEEEeCC---CcEEEEEeC
Confidence 34567899999999999999999964322111 1 12346777666666641 567999999
Q ss_pred CCCCC-------cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh-----cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVD-------FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK-----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~-------f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~-----~~~p~iiviNK~D~~~ 143 (1021)
||..+ +.....+.+..+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+..
T Consensus 214 PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 214 PGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred CCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 99853 445667778889999999999864333333344 33332 3689999999999864
No 278
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.56 E-value=9.2e-14 Score=140.46 Aligned_cols=112 Identities=19% Similarity=0.182 Sum_probs=77.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.|+|||||+++|....- .. ... .+ .+ ..++ ....++..+.+++|||||+.+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~--~~--~~~--~~-~~--------~~~~-------~~~~~~~~~~~~i~Dt~G~~~ 59 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF--PE--NVP--RV-LP--------EITI-------PADVTPERVPTTIVDTSSRPQ 59 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--Cc--cCC--Cc-cc--------ceEe-------eeeecCCeEEEEEEeCCCchh
Confidence 689999999999999999974221 00 000 00 00 1111 111123468899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHH-HHh--hcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWF-QSQ--KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~-~~~--~~~~p~iiviNK~D~~~ 143 (1021)
+...+...++.+|++++|+|+++....+.. ..|. .+. ..++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 60 DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 117 (166)
T ss_pred hhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 888888889999999999999886555442 2342 232 24789999999999864
No 279
>PLN03110 Rab GTPase; Provisional
Probab=99.56 E-value=5e-14 Score=148.60 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=82.9
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+...+|+++|+.++|||||+++|+...-.. + . ..|+...........++....++|||
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-------------~-----~--~~t~g~~~~~~~v~~~~~~~~l~l~D 67 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL-------------E-----S--KSTIGVEFATRTLQVEGKTVKAQIWD 67 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCC-------------C-----C--CCceeEEEEEEEEEECCEEEEEEEEE
Confidence 34567899999999999999999996321110 0 0 11222222211222233457899999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
|||+..|......+++.+|++|+|+|.++....+....| ..+. ..++|+++++||+|+.
T Consensus 68 t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 999999999999999999999999999876444444334 3333 2479999999999974
No 280
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.56 E-value=6.4e-14 Score=138.96 Aligned_cols=132 Identities=14% Similarity=0.187 Sum_probs=97.7
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
|.+...-||++|.+|+|||||+|+|..+... .+.+ ..+|.|...+. |.+. ..+.|+|
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~L-ArtS---------------ktPGrTq~iNf--f~~~-----~~~~lVD 76 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNL-ARTS---------------KTPGRTQLINF--FEVD-----DELRLVD 76 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcce-eecC---------------CCCCccceeEE--EEec-----CcEEEEe
Confidence 5667789999999999999999999864432 1111 23456666553 3343 2388999
Q ss_pred CCCC----------CCcHHHHHHHh---hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC-CHHHH
Q psy5021 84 TPGH----------VDFTIEVERSL---RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA-NYNNC 149 (1021)
Q Consensus 84 tPG~----------~~f~~~~~~~l---~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~-~~~~~ 149 (1021)
.||+ ..+...+..++ ....+++++||+.+++...++++++++...++|+++++||+|+... +..+.
T Consensus 77 lPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~ 156 (200)
T COG0218 77 LPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQ 156 (200)
T ss_pred CCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHH
Confidence 9997 22333444455 3478999999999999999999999999999999999999999763 35555
Q ss_pred HHHHHHHhC
Q psy5021 150 IIDIKKKFN 158 (1021)
Q Consensus 150 ~~~i~~~l~ 158 (1021)
+..+++.+.
T Consensus 157 l~~v~~~l~ 165 (200)
T COG0218 157 LNKVAEELK 165 (200)
T ss_pred HHHHHHHhc
Confidence 666665554
No 281
>KOG0467|consensus
Probab=99.55 E-value=2.2e-14 Score=163.74 Aligned_cols=125 Identities=27% Similarity=0.426 Sum_probs=114.8
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
...++.|+|||||||.+.|+..++.+.....-..+++|....|..||+|...+.+++..++..++|||+|||-||....-
T Consensus 11 n~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevs 90 (887)
T KOG0467|consen 11 NICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVS 90 (887)
T ss_pred EEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhh
Confidence 34578899999999999999877777666666667899999999999999999999888899999999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecc
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKAD 778 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~D 778 (1021)
++.+-+|+++++||+.+|+..||...+..+-..|.. .|+|+||||
T Consensus 91 sas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~-~~lvinkid 135 (887)
T KOG0467|consen 91 SASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLK-PILVINKID 135 (887)
T ss_pred hhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCc-eEEEEehhh
Confidence 999999999999999999999999999999999998 788999999
No 282
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.55 E-value=5.3e-14 Score=142.79 Aligned_cols=116 Identities=19% Similarity=0.232 Sum_probs=80.9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..+|+++|+.|+|||||+++++... .. .+....+........+.+ ++..+.+++|||||
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~--~~----------------~~~~~t~~~~~~~~~~~~--~~~~~~~~i~Dt~G 60 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGR--FP----------------ERTEATIGVDFRERTVEI--DGERIKVQLWDTAG 60 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC--CC----------------CccccceeEEEEEEEEEE--CCeEEEEEEEeCCC
Confidence 35799999999999999999996311 00 001111222222222223 23457899999999
Q ss_pred CCCcHH-HHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHhh----cCCCEEEEEeCcCCC
Q psy5021 87 HVDFTI-EVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~-~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~~----~~~p~iiviNK~D~~ 142 (1021)
+.+|.. .....++.+|++++|+|+++....+....|. .+.. .++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 61 QERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred hHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 999874 4677789999999999999876666665664 3332 468999999999985
No 283
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.55 E-value=4.5e-14 Score=141.82 Aligned_cols=113 Identities=19% Similarity=0.178 Sum_probs=77.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..|+|||||+++|+........ . .|+........+...+....+++|||||+..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~------------------~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 61 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKH------------------E--STTQASFFQKTVNIGGKRIDLAIWDTAGQER 61 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc------------------C--CccceeEEEEEEEECCEEEEEEEEECCchHH
Confidence 7999999999999999999743221100 0 0111111111111123356799999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH----HHhhcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF----QSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~----~~~~~~~p~iiviNK~D~~ 142 (1021)
|...+...++.+|++++|+|.+++...+....|. .....++|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~ 118 (162)
T cd04123 62 YHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE 118 (162)
T ss_pred HHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 9888888899999999999998865444443332 2223368999999999985
No 284
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.55 E-value=3.9e-14 Score=142.46 Aligned_cols=152 Identities=15% Similarity=0.148 Sum_probs=100.9
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee----CCeEEEEEecCChhhhH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES----ENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~----~~~~i~liDtpG~~~~~ 728 (1021)
.+.++|.+++|||||+++|++.... .+....++.+.....+.. ....+.+|||||+++|.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 65 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT----------------KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFD 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHH
Confidence 3567899999999999999974311 011122223332222322 24578899999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHH-HHHHHH--cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREH-ILLARQ--VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~-l~~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
..+..+++.+|++++|+|+++....+.... +..+.. .++| +|+|+||+|+....... .++...+.+.++
T Consensus 66 ~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~v~---~~~~~~~~~~~~---- 137 (162)
T cd04106 66 AITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIP-MVLVQTKIDLLDQAVIT---NEEAEALAKRLQ---- 137 (162)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhcccccCCC---HHHHHHHHHHcC----
Confidence 988889999999999999987543333222 222222 2678 89999999987522211 123344444444
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++++||+++. +++++++.|.+
T Consensus 138 -~~~~~~Sa~~~~-----------~v~~l~~~l~~ 160 (162)
T cd04106 138 -LPLFRTSVKDDF-----------NVTELFEYLAE 160 (162)
T ss_pred -CeEEEEECCCCC-----------CHHHHHHHHHH
Confidence 478999999873 88889988864
No 285
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.55 E-value=3.8e-14 Score=142.67 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=106.6
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+...+.|.+++|||||+++|++..... ...+..|.+.......+......+.+||+||+++|...+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE--------------NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence 346778899999999999999754111 122333444444444444444677899999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGP-MPQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
...++.+|++++|+|+++.. +.+...++..+... ++| +++++||+|+.+.... ..++...+....+ +
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~-----~ 138 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNII-IALVGNKADLESKRQV---STEEAQEYADENG-----L 138 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccCcC---CHHHHHHHHHHcC-----C
Confidence 88889999999999998643 23444455544444 356 8999999998742110 1122333444333 4
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+++++||++|. |+.++++.|.+.+
T Consensus 139 ~~~~~Sa~~~~-----------~v~~l~~~l~~~l 162 (163)
T cd01860 139 LFFETSAKTGE-----------NVNELFTEIAKKL 162 (163)
T ss_pred EEEEEECCCCC-----------CHHHHHHHHHHHh
Confidence 78999999873 8899999887654
No 286
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.55 E-value=4.6e-14 Score=147.00 Aligned_cols=112 Identities=16% Similarity=0.179 Sum_probs=76.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceee-eeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITIT-SASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~-~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
+|+++|+.|+|||||+++|+...-. . .+ ..|+. .....+.+. +....++||||||+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~-----------~~-------~~t~~~~~~~~~~~~--~~~~~l~i~D~~G~~ 58 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--P-----------KY-------RRTVEEMHRKEYEVG--GVSLTLDILDTSGSY 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--c-----------cC-------CCchhhheeEEEEEC--CEEEEEEEEECCCch
Confidence 4799999999999999999742210 0 00 00111 111222333 234789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-----HHHhhcCCCEEEEEeCcCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-----FQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-----~~~~~~~~p~iiviNK~D~~~ 143 (1021)
+|......+++.+|++|+|+|+++....+....| +.....++|+++++||+|+..
T Consensus 59 ~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 59 SFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 9998888899999999999999875433322222 222235799999999999853
No 287
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.55 E-value=2.3e-14 Score=126.67 Aligned_cols=82 Identities=22% Similarity=0.466 Sum_probs=74.2
Q ss_pred eEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe-c---CCccc
Q psy5021 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV-G---LKESS 373 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~ 373 (1021)
|.++|||+.+|++.|+++|+|||+|+|++||.|++...++++++.+++. ++.+..+++++.||||+++. | ++++.
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~-~~~~~~~~~~~~aGdI~~v~~g~~~l~~~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGI-FRPEMTPTDELSAGQVGYIIAGIKTVKDAR 79 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEE-ECCCccCCceECCCCEEEEEccccccCccc
Confidence 5799999999999999999999999999999999988777899999995 47778999999999999995 3 67789
Q ss_pred cCCeecc
Q psy5021 374 TGDTLCS 380 (1021)
Q Consensus 374 ~gdtl~~ 380 (1021)
+|||||.
T Consensus 80 ~Gdtl~~ 86 (86)
T cd03699 80 VGDTITL 86 (86)
T ss_pred cccEeeC
Confidence 9999974
No 288
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.55 E-value=8.1e-14 Score=140.92 Aligned_cols=111 Identities=20% Similarity=0.181 Sum_probs=80.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..++|||||+++|... ... ....|+......+.+. ++.++++||||+..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~~------------------~~~~t~g~~~~~~~~~----~~~~~i~D~~G~~~ 55 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IPK------------------KVAPTVGFTPTKLRLD----KYEVCIFDLGGGAN 55 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CCc------------------cccCcccceEEEEEEC----CEEEEEEECCCcHH
Confidence 4899999999999999998531 100 0112333333345555 78999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHHHHhh----cCCCEEEEEeCcCCCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQ-TETVWFQSQK----YKVPKMIFVNKMDRIGAN 145 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~~~~~----~~~p~iiviNK~D~~~~~ 145 (1021)
|...+..+++.+|++|+|+|+++.-..+ ....+..+.. .++|+++|+||+|++.+.
T Consensus 56 ~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 56 FRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred HHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 9999999999999999999998753222 2333343322 478999999999997654
No 289
>PRK04213 GTP-binding protein; Provisional
Probab=99.55 E-value=7.5e-14 Score=145.91 Aligned_cols=155 Identities=23% Similarity=0.286 Sum_probs=102.5
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCC-------
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPG------- 723 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG------- 723 (1021)
...++++|.+++|||||+|+|++... ..+...|+|.+..... .. .+.+|||||
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~----------------~~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~ 68 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKV----------------RVGKRPGVTRKPNHYD--WG--DFILTDLPGFGFMSGV 68 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCceeeCceEEe--ec--ceEEEeCCcccccccc
Confidence 46789999999999999999987431 1223346676654433 22 589999999
Q ss_pred ----hhhhHHHHHHHh----hhCCEEEEEEECCCC-----------CcHHHHHHHHHHHHcCCCeEEEEEeeccccchhh
Q psy5021 724 ----HADYIKNMITGA----AQMDGAILVCSAVDG-----------PMPQTREHILLARQVGVPNIVVFLNKADCVQDKE 784 (1021)
Q Consensus 724 ----~~~~~~~~~~~~----~~aD~ailVvDa~~g-----------~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~ 784 (1021)
.++|...+..++ ..+|++++|+|++.. ...++.+++..+...++| +++|+||+|+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~~~- 146 (201)
T PRK04213 69 PKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP-PIVAVNKMDKIKNR- 146 (201)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC-eEEEEECccccCcH-
Confidence 455655444443 456899999998642 223456667777778899 88999999997532
Q ss_pred HHHHHHHHHHHhhhccccC----CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCC
Q psy5021 785 LLDLVEMEIRELLTEYDFD----GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPT 844 (1021)
Q Consensus 785 ~~~~~~~~~~~~l~~~~~~----~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~ 844 (1021)
....+++.+ .++.. ....+++++||++| |+++++++|.+.++.
T Consensus 147 --~~~~~~~~~---~~~~~~~~~~~~~~~~~~SA~~g------------gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 147 --DEVLDEIAE---RLGLYPPWRQWQDIIAPISAKKG------------GIEELKEAIRKRLHE 193 (201)
T ss_pred --HHHHHHHHH---HhcCCccccccCCcEEEEecccC------------CHHHHHHHHHHhhcC
Confidence 111222322 22321 11136899999965 678899998876643
No 290
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.55 E-value=3.2e-14 Score=165.38 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=84.5
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+++|++|+|||||+++|+.....+.. ...|.|.+.....+.+. ++.+++|||||+.
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~-----------------~~~gtT~d~~~~~i~~~----g~~i~l~DT~G~~ 274 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVT-----------------DIAGTTRDVIEEHINLD----GIPLRLIDTAGIR 274 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccC-----------------CCCCcccccEEEEEEEC----CeEEEEEeCCCCC
Confidence 47999999999999999999753322211 12345555555556666 7889999999998
Q ss_pred CcHHH--------HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 89 DFTIE--------VERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~--------~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
++... +...++.+|++++|+|++++...+....|.. ..++|+++|+||+|+.
T Consensus 275 ~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~ 334 (449)
T PRK05291 275 ETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLT 334 (449)
T ss_pred CCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhcc
Confidence 76532 3446788999999999998877766667765 5578999999999985
No 291
>KOG1423|consensus
Probab=99.55 E-value=4.7e-14 Score=145.62 Aligned_cols=118 Identities=20% Similarity=0.211 Sum_probs=84.3
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..++-+||++|.+|+|||||+|.|+...-.... + .-..|.......+.-. .+++.|.||
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS--------~---------K~~TTr~~ilgi~ts~----eTQlvf~DT 127 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVS--------R---------KVHTTRHRILGIITSG----ETQLVFYDT 127 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCcccccc--------c---------cccceeeeeeEEEecC----ceEEEEecC
Confidence 467889999999999999999999865433222 1 1112444444444444 789999999
Q ss_pred CCCC------------CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHh-hcCCCEEEEEeCcCCCC
Q psy5021 85 PGHV------------DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQ-KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~------------~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~-~~~~p~iiviNK~D~~~ 143 (1021)
||.+ .|......|+..||.+++|+|+++.-....-.+++.+. -.++|-++|+||+|...
T Consensus 128 PGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 128 PGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLK 199 (379)
T ss_pred CcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcch
Confidence 9952 34456788999999999999999643333344555553 35799999999999863
No 292
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.55 E-value=5.7e-14 Score=142.71 Aligned_cols=112 Identities=20% Similarity=0.196 Sum_probs=78.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeee-eEEEeecccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSAS-VSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~-~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-+|+++|..|+|||||+.+++...- .. .+ ..|+.... ..+.+ ++..+.+++|||||.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f--~~-----------~~-------~~t~~~~~~~~~~~--~~~~~~l~i~Dt~G~ 60 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF--PD-----------YH-------DPTIEDAYKQQARI--DNEPALLDILDTAGQ 60 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CC-----------Cc-------CCcccceEEEEEEE--CCEEEEEEEEeCCCc
Confidence 3689999999999999999974211 10 00 01221111 11222 234578999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HH----hhcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~----~~~~~p~iiviNK~D~~ 142 (1021)
.+|...+..+++.+|++|+|+|.++....+...-|. .+ ...++|+++|+||+|+.
T Consensus 61 ~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 61 AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 999999999999999999999999876655544332 22 23479999999999985
No 293
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.54 E-value=9.5e-14 Score=139.80 Aligned_cols=113 Identities=18% Similarity=0.158 Sum_probs=75.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|.+|+|||||+++|+...-.-.. ..+..+. . ......++..+.+.+|||||+.+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~------~~~~~~~----------~-----~~~~~~~~~~~~~~i~D~~g~~~ 60 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDY------EPTKADS----------Y-----RKKVVLDGEDVQLNILDTAGQED 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcccc------CCcchhh----------E-----EEEEEECCEEEEEEEEECCChhh
Confidence 7999999999999999999743211000 0000010 0 00111122367899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHHHH----hhcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQ-TETVWFQS----QKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~~~----~~~~~p~iiviNK~D~~~ 143 (1021)
|......+++.+|++++|+|..+.-... ....+... ...++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 61 YAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 9999999999999999999987643211 12222222 235899999999999853
No 294
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.54 E-value=3.6e-14 Score=141.38 Aligned_cols=115 Identities=23% Similarity=0.277 Sum_probs=77.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+++|++|+|||||+++|+... .. .+..++++.......+.+. +..+.+.+|||||+.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~-----------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FI-----------------TEYKPGTTRNYVTTVIEED--GKTYKFNLLDTAGQE 61 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-Cc-----------------CcCCCCceeeeeEEEEEEC--CEEEEEEEEECCCcc
Confidence 589999999999999999997432 11 1122344554444334444 223789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCC-------CchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSG-------IQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g-------~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
+|........+.++.++.++|.... .......+++.+.. +.|+++++||+|+...
T Consensus 62 ~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 62 DYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDA 123 (161)
T ss_pred cchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcc
Confidence 9977776666667666666666543 33344444444433 8999999999998643
No 295
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.54 E-value=4.4e-14 Score=157.08 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=108.2
Q ss_pred cccc-ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee-CCeEEEEEecCChh
Q psy5021 648 DLRS-NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES-ENKHYAHVDCPGHA 725 (1021)
Q Consensus 648 ~l~~-~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~-~~~~i~liDtpG~~ 725 (1021)
+|+. ..+|++|++|||||||+++|+.....+...+ ++|..+....+++ ++..+.+||+||..
T Consensus 154 elk~~adVglVG~PNaGKSTLln~ls~a~~~va~yp----------------fTT~~p~~G~v~~~~~~~~~i~D~PGli 217 (335)
T PRK12299 154 ELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYP----------------FTTLHPNLGVVRVDDYKSFVIADIPGLI 217 (335)
T ss_pred EEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCC----------------CceeCceEEEEEeCCCcEEEEEeCCCcc
Confidence 4554 4789999999999999999998543332222 3466666666666 45789999999963
Q ss_pred h-------hHHHHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH-----cCCCeEEEEEeeccccchhhHHHHHHHH
Q psy5021 726 D-------YIKNMITGAAQMDGAILVCSAVDGP-MPQTREHILLARQ-----VGVPNIVVFLNKADCVQDKELLDLVEME 792 (1021)
Q Consensus 726 ~-------~~~~~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~-----~~ip~iIvviNK~Dl~~~~~~~~~~~~~ 792 (1021)
+ +...++..+..+|++++|+|+++.. ..+...+...+.. .+.| +++|+||+|+.+...... .+
T Consensus 218 ~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp-~IIV~NKiDL~~~~~~~~---~~ 293 (335)
T PRK12299 218 EGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKP-RILVLNKIDLLDEEEERE---KR 293 (335)
T ss_pred CCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCC-eEEEEECcccCCchhHHH---HH
Confidence 2 4455666778899999999998643 2333333344433 2566 888999999975322111 12
Q ss_pred HHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 793 IRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 793 ~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
+..+++.. ..+++++||+++ +++++|+++|.+.+.
T Consensus 294 ~~~~~~~~-----~~~i~~iSAktg-----------~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 294 AALELAAL-----GGPVFLISAVTG-----------EGLDELLRALWELLE 328 (335)
T ss_pred HHHHHHhc-----CCCEEEEEcCCC-----------CCHHHHHHHHHHHHH
Confidence 22222222 246899999987 389999999887653
No 296
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.54 E-value=5.5e-14 Score=142.31 Aligned_cols=151 Identities=19% Similarity=0.175 Sum_probs=97.4
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh-----
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY----- 727 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~----- 727 (1021)
++..+|.+++|||||+++|++.... .+...+.|.+.....+...+..+.||||||+.+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 65 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPE----------------VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEER 65 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCc----------------cCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCC
Confidence 4567899999999999999985321 1112244555555555566789999999998421
Q ss_pred --H-HHHHHHh-hhCCEEEEEEECCCCCc---HHHHHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 728 --I-KNMITGA-AQMDGAILVCSAVDGPM---PQTREHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 728 --~-~~~~~~~-~~aD~ailVvDa~~g~~---~qt~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
. ....... ..+|++|+|+|+++... ....+++..+... +.| +|+|+||+|+.+... ... ..++.+
T Consensus 66 ~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~-~~~----~~~~~~ 139 (168)
T cd01897 66 NTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKP-VIVVLNKIDLLTFED-LSE----IEEEEE 139 (168)
T ss_pred chHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCC-eEEEEEccccCchhh-HHH----HHHhhh
Confidence 1 1122222 34699999999987432 2223445555444 677 999999999976322 111 222222
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
. ...+++++||++| +|+++++++|.+.
T Consensus 140 ~-----~~~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 166 (168)
T cd01897 140 L-----EGEEVLKISTLTE-----------EGVDEVKNKACEL 166 (168)
T ss_pred h-----ccCceEEEEeccc-----------CCHHHHHHHHHHH
Confidence 1 1357899999988 4899999988754
No 297
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.54 E-value=1e-13 Score=137.51 Aligned_cols=159 Identities=24% Similarity=0.266 Sum_probs=111.5
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh------
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH------ 724 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~------ 724 (1021)
..-+..+|.+|+|||||+|+|++.... .....+.|.|..+.+..+.. .+.|+|.||.
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~L--------------ArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~ 86 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNL--------------ARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVP 86 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcce--------------eecCCCCCccceeEEEEecC---cEEEEeCCCcccccCC
Confidence 456789999999999999999985421 22345669999888766543 3889999992
Q ss_pred ----hhhHHHHHHHhh---hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 725 ----ADYIKNMITGAA---QMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 725 ----~~~~~~~~~~~~---~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
+++-+.+..|+. +-.++++++|+.+++...+++.+.++...++| ++|++||+|.+...++.+ ....+.+.
T Consensus 87 k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~-~~vv~tK~DKi~~~~~~k-~l~~v~~~- 163 (200)
T COG0218 87 KEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIP-VIVVLTKADKLKKSERNK-QLNKVAEE- 163 (200)
T ss_pred HHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCC-eEEEEEccccCChhHHHH-HHHHHHHH-
Confidence 344555555553 46889999999999999999999999999999 888999999987433222 22333322
Q ss_pred hccccCCC-ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 798 TEYDFDGE-NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 798 ~~~~~~~~-~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+++... ...++..|+.++ .|+++|...|.+.+
T Consensus 164 --l~~~~~~~~~~~~~ss~~k-----------~Gi~~l~~~i~~~~ 196 (200)
T COG0218 164 --LKKPPPDDQWVVLFSSLKK-----------KGIDELKAKILEWL 196 (200)
T ss_pred --hcCCCCccceEEEEecccc-----------cCHHHHHHHHHHHh
Confidence 222211 111555666655 37888888876644
No 298
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.54 E-value=4.7e-14 Score=146.05 Aligned_cols=114 Identities=17% Similarity=0.130 Sum_probs=76.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|..|+|||||+++|......... + -.|+...........++....+++|||||+..
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~------------~-------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 62 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGN------------F-------IATVGIDFRNKVVTVDGVKVKLQIWDTAGQER 62 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccC------------c-------CCcccceeEEEEEEECCEEEEEEEEeCCCcHH
Confidence 5899999999999999999642211000 0 01221111111112223367899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++|+|+|+++....+....| ..+. ..++|+++++||+|+.
T Consensus 63 ~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 63 FRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred HHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 988888899999999999999875433222222 2332 2468999999999985
No 299
>PLN03118 Rab family protein; Provisional
Probab=99.54 E-value=9.7e-14 Score=146.12 Aligned_cols=116 Identities=18% Similarity=0.160 Sum_probs=80.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+.-.+|+|+|+.|+|||||+++|+...- .. ..+..+.......+.+. +..+.++|||||
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~--~~-----------------~~~t~~~~~~~~~~~~~--~~~~~l~l~Dt~ 70 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSV--ED-----------------LAPTIGVDFKIKQLTVG--GKRLKLTIWDTA 70 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCC--CC-----------------cCCCceeEEEEEEEEEC--CEEEEEEEEECC
Confidence 3346899999999999999999974321 10 00111122222222332 335789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHH-h----hcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQS-Q----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~-~----~~~~p~iiviNK~D~~ 142 (1021)
|+.+|...+..+++.+|++|+|+|+++....+.. ..|... . ..+.|+++|+||+|+.
T Consensus 71 G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 71 GQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133 (211)
T ss_pred CchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999999999999876444433 335332 1 2467999999999985
No 300
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.54 E-value=7.9e-14 Score=145.32 Aligned_cols=117 Identities=18% Similarity=0.141 Sum_probs=79.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+...+|+++|..|+|||||+++|+...- .. .+ ...+.+......+.+ ++....+.|||||
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~--~~-----------~~-----~~t~~~~~~~~~~~~--~~~~~~l~l~D~~ 63 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTF--SG-----------SY-----ITTIGVDFKIRTVEI--NGERVKLQIWDTA 63 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC--CC-----------Cc-----CccccceeEEEEEEE--CCEEEEEEEEeCC
Confidence 3567899999999999999999963211 00 00 001111111122222 2335678999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh--hcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ--KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~--~~~~p~iiviNK~D~~ 142 (1021)
|+..|...+..+++.+|++++|+|+++.-..+....| .... ....|+++|+||+|+.
T Consensus 64 G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 64 GQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred CchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 9999999999999999999999999876443333333 2222 2358999999999985
No 301
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.54 E-value=1.3e-13 Score=139.85 Aligned_cols=116 Identities=17% Similarity=0.133 Sum_probs=79.3
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
...+|+++|..|+|||||+++++...- .. +..+ |+........+..++....+.+|||||
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~--~~----------------~~~~--~~~~~~~~~~~~~~~~~~~l~i~D~~G 63 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKF--DT----------------QLFH--TIGVEFLNKDLEVDGHFVTLQIWDTAG 63 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCC--Cc----------------CcCC--ceeeEEEEEEEEECCeEEEEEEEeCCC
Confidence 456899999999999999999963211 00 0001 222111111222234467889999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-H----h---hcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-S----Q---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~----~---~~~~p~iiviNK~D~~ 142 (1021)
+..|...+..+++.+|++++|+|.++....+....|.. . . ..++|+++++||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 64 QERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred hHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 99999999999999999999999987654443333422 1 1 2468999999999985
No 302
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.54 E-value=6.6e-14 Score=141.65 Aligned_cols=154 Identities=19% Similarity=0.117 Sum_probs=102.9
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+.++|.+++|||||+++|...... ....+.|.++ ..+...+..+.+|||||+++|...
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~---------------~~~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~~~ 69 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV---------------TTIPTVGFNV----ETVTYKNVKFNVWDVGGQDKIRPL 69 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc---------------cccCCcccce----EEEEECCEEEEEEECCCCHHHHHH
Confidence 467889999999999999999863210 0111223322 233446788999999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGP-MPQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++|+|+|+++.. +....+++..... .++| +++++||+|+.+.. .. +++.+.++.......
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~~----~~i~~~~~~~~~~~~ 143 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL-LLVFANKQDLPDAM-KP----HEIQEKLGLTRIRDR 143 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCc-EEEEEECcCCccCC-CH----HHHHHHcCCCccCCC
Confidence 888899999999999998743 2333344432221 3567 99999999986421 11 233333322112222
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..+++++||++|. |+++++++|.+
T Consensus 144 ~~~~~~~SAk~g~-----------gv~~~~~~l~~ 167 (168)
T cd04149 144 NWYVQPSCATSGD-----------GLYEGLTWLSS 167 (168)
T ss_pred cEEEEEeeCCCCC-----------ChHHHHHHHhc
Confidence 3578999999883 88899988854
No 303
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.54 E-value=6.2e-14 Score=145.41 Aligned_cols=153 Identities=16% Similarity=0.164 Sum_probs=101.9
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~ 731 (1021)
+-++|..++|||||+.++.... +. .+....++.+.....+..++ ..+.+|||+|+++|...+
T Consensus 3 vvvlG~~gVGKTSli~r~~~~~--------------f~--~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~ 66 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTDDT--------------FC--EACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT 66 (202)
T ss_pred EEEECcCCCCHHHHHHHHHhCC--------------CC--CcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHH
Confidence 4577889999999999998743 11 11112233344444455555 567899999999999999
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..+++.||++|+|+|.++....+. ..++..+... ++| +|+|.||+|+.+..+.. ..+..++.+.+. +.
T Consensus 67 ~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~v~---~~~~~~~a~~~~----~~ 138 (202)
T cd04120 67 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREIS---RQQGEKFAQQIT----GM 138 (202)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccccC---HHHHHHHHHhcC----CC
Confidence 999999999999999998554333 3334444332 466 99999999986422211 122333333321 24
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.++.+||++|. |+++++++|.+.
T Consensus 139 ~~~etSAktg~-----------gV~e~F~~l~~~ 161 (202)
T cd04120 139 RFCEASAKDNF-----------NVDEIFLKLVDD 161 (202)
T ss_pred EEEEecCCCCC-----------CHHHHHHHHHHH
Confidence 68999999884 777777777653
No 304
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.54 E-value=4.4e-14 Score=144.66 Aligned_cols=116 Identities=15% Similarity=0.153 Sum_probs=82.5
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
-.+..+|+|+|++|+|||||+++|...... ... . ...|.|..... +.+. ..+.+|||
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~-~~~---------~------~~~~~t~~~~~--~~~~-----~~~~liDt 71 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKL-ART---------S------KTPGRTQLINF--FEVN-----DGFRLVDL 71 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-ccc---------c------CCCCcceEEEE--EEeC-----CcEEEEeC
Confidence 466789999999999999999999743211 000 0 11233433221 2222 26899999
Q ss_pred CCCC----------CcHHHHHHHhh---ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 85 PGHV----------DFTIEVERSLR---VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~----------~f~~~~~~~l~---~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
||+. +|......+++ .+|++++|+|++.+...++..+++.+...++|+++++||+|+..
T Consensus 72 pG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 72 PGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred CCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 9963 23333444444 46899999999999999999889998888999999999999863
No 305
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.54 E-value=9.1e-14 Score=139.62 Aligned_cols=152 Identities=18% Similarity=0.152 Sum_probs=104.2
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~ 731 (1021)
+..+|.+++|||||+++|++.... .+...+.+.+.....+..++ ..+.+|||||+.+|...+
T Consensus 3 i~liG~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~ 66 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYDTFD----------------NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLI 66 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCC----------------ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 567899999999999999974321 12233445555555555555 357899999999999888
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHH-HcC--CCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLAR-QVG--VPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~-~~~--ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
...++.+|++++|+|+++....+. ..++.... ..+ +| +++++||+|+.+..... .++...+.+..+ +
T Consensus 67 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~~~~~---~~~~~~~~~~~~-----~ 137 (161)
T cd01861 67 PSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVI-IVLVGNKTDLSDKRQVS---TEEGEKKAKELN-----A 137 (161)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEEChhccccCccC---HHHHHHHHHHhC-----C
Confidence 888999999999999987554333 33333332 333 67 99999999985422111 122233333322 5
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++||+++. ++++++++|.+.
T Consensus 138 ~~~~~Sa~~~~-----------~v~~l~~~i~~~ 160 (161)
T cd01861 138 MFIETSAKAGH-----------NVKELFRKIASA 160 (161)
T ss_pred EEEEEeCCCCC-----------CHHHHHHHHHHh
Confidence 78999999873 889999988653
No 306
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.54 E-value=7.1e-14 Score=142.30 Aligned_cols=115 Identities=18% Similarity=0.176 Sum_probs=79.7
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..+..+|+++|+.|+|||||+++|....- .. . ....|+++ ..+.+. +..+.+|||
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~--~~------------~---~~t~g~~~----~~i~~~----~~~~~~~D~ 65 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDI--SH------------I---TPTQGFNI----KTVQSD----GFKLNVWDI 65 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCC--cc------------c---CCCCCcce----EEEEEC----CEEEEEEEC
Confidence 34466799999999999999999953210 00 0 01112222 234455 678999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCch-hHHHHHH----HHhhcCCCEEEEEeCcCCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQP-QTETVWF----QSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~-~t~~~~~----~~~~~~~p~iiviNK~D~~~~ 144 (1021)
||+..|...+...++.+|++++|+|+++.... .....+. .....++|+++++||+|+...
T Consensus 66 ~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 66 GGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 99999999999999999999999999863211 1222222 223457999999999998643
No 307
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.54 E-value=6.5e-14 Score=140.31 Aligned_cols=151 Identities=20% Similarity=0.161 Sum_probs=99.4
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.++|.+++|||||+++|...... . ...+.|.+ ...++..+..+.+|||||+.+|...+..
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~~~~------------~---~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 62 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVV------------T---TIPTIGFN----VETVTYKNLKFQVWDLGGQTSIRPYWRC 62 (158)
T ss_pred EEEECCCCCCHHHHHHHHccCCCc------------C---cCCccCcC----eEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 457899999999999999763211 0 01111222 2234456778999999999999988889
Q ss_pred HhhhCCEEEEEEECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 734 GAAQMDGAILVCSAVDGPM-PQTREHIL-LARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~-~qt~e~l~-~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
++..+|++|+|+|+++... ....+.+. ++.. .+.| +++++||+|+.+... .. ++...+....+...+.+
T Consensus 63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~~ 136 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAV-LLVFANKQDMPGALS-EA----EISEKLGLSELKDRTWS 136 (158)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCCC-HH----HHHHHhCccccCCCcEE
Confidence 9999999999999987432 22233333 2222 3667 999999999875221 11 22222221112223467
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++||++| .|+++++++|.+
T Consensus 137 ~~~~Sa~~~-----------~gi~~l~~~l~~ 157 (158)
T cd04151 137 IFKTSAIKG-----------EGLDEGMDWLVN 157 (158)
T ss_pred EEEeeccCC-----------CCHHHHHHHHhc
Confidence 999999988 389999998854
No 308
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.53 E-value=5.4e-14 Score=141.98 Aligned_cols=157 Identities=16% Similarity=0.126 Sum_probs=102.4
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+...++|.+++|||||+++|++..... ......|.+..............+.+|||||+++|...+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS--------------AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 356788999999999999999743110 011122322222222222223567899999999999988
Q ss_pred HHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..+++.+|++++|+|.++... .+..+++..+... ..| +++|+||+|+.+..... .++..++.+.++ .
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~ 138 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDERVVS---SERGRQLADQLG-----F 138 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCC-EEEEEECcccCcccccC---HHHHHHHHHHcC-----C
Confidence 889999999999999986433 2333444444433 345 99999999997532111 122233333343 4
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+++++||++|. |+++|++.|.+.+
T Consensus 139 ~~~~~Sa~~~~-----------gv~~l~~~l~~~~ 162 (165)
T cd01865 139 EFFEASAKENI-----------NVKQVFERLVDII 162 (165)
T ss_pred EEEEEECCCCC-----------CHHHHHHHHHHHH
Confidence 68999999873 8899999887643
No 309
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.53 E-value=6.3e-14 Score=141.95 Aligned_cols=156 Identities=17% Similarity=0.127 Sum_probs=103.5
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.+.++|.+++|||||++++++.... .......|.+.......+......+.+|||||+++|....
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 70 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQ--------------PVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSIT 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--------------CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 45678899999999999999874311 1111223444433333333333568899999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..+++.+|++++|+|+++....+. ..++..+... ++| +|||+||+|+.+.... ..++...+++..+ .
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~ 141 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMT-IMLIGNKCDLESRREV---SYEEGEAFAKEHG-----L 141 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccCC---CHHHHHHHHHHcC-----C
Confidence 888999999999999986443333 3333334332 567 8999999998742211 1123334444433 4
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++||+++ .|++++++.+.+.
T Consensus 142 ~~~e~Sa~~~-----------~~i~~~~~~~~~~ 164 (168)
T cd01866 142 IFMETSAKTA-----------SNVEEAFINTAKE 164 (168)
T ss_pred EEEEEeCCCC-----------CCHHHHHHHHHHH
Confidence 7899999987 3788888777653
No 310
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.53 E-value=2.8e-14 Score=161.73 Aligned_cols=178 Identities=15% Similarity=0.175 Sum_probs=114.7
Q ss_pred ccc-ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC-eEEEEEecCChhh
Q psy5021 649 LRS-NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN-KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~-~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-~~i~liDtpG~~~ 726 (1021)
|+. ..+|++|.+|+|||||+|+|++....+.. ..++|.......+...+ ..+.|+||||..+
T Consensus 156 lk~iadValVG~PNaGKSTLln~Lt~~k~~vs~----------------~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~ 219 (390)
T PRK12298 156 LKLLADVGLLGLPNAGKSTFIRAVSAAKPKVAD----------------YPFTTLVPNLGVVRVDDERSFVVADIPGLIE 219 (390)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHhCCcccccC----------------CCCCccCcEEEEEEeCCCcEEEEEeCCCccc
Confidence 444 37999999999999999999985432222 22456666666666654 4699999999642
Q ss_pred -------hHHHHHHHhhhCCEEEEEEECCC----CCcHHHHHHHHHHHHc-----CCCeEEEEEeeccccchhhHHHHHH
Q psy5021 727 -------YIKNMITGAAQMDGAILVCSAVD----GPMPQTREHILLARQV-----GVPNIVVFLNKADCVQDKELLDLVE 790 (1021)
Q Consensus 727 -------~~~~~~~~~~~aD~ailVvDa~~----g~~~qt~e~l~~~~~~-----~ip~iIvviNK~Dl~~~~~~~~~~~ 790 (1021)
....++..+..+|++++|+|++. ....+...++..+... +.| +|+|+||+|+.+.++ +.
T Consensus 220 ~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP-~IlVlNKiDl~~~~e----l~ 294 (390)
T PRK12298 220 GASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKP-RWLVFNKIDLLDEEE----AE 294 (390)
T ss_pred cccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCC-EEEEEeCCccCChHH----HH
Confidence 34456677899999999999872 2223333444444432 567 788999999875322 22
Q ss_pred HHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC------CCCCCCCeeEEEEEEE
Q psy5021 791 MEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP------NRITDKPFLMPIEDVF 861 (1021)
Q Consensus 791 ~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~------~~~~~~p~~~~I~~~~ 861 (1021)
+.+..+.+.+++ ..+++++||+++ .++++|++.|.+.++.. ...++.+.++.+.++.
T Consensus 295 ~~l~~l~~~~~~---~~~Vi~ISA~tg-----------~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~Eii 357 (390)
T PRK12298 295 ERAKAIVEALGW---EGPVYLISAASG-----------LGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYH 357 (390)
T ss_pred HHHHHHHHHhCC---CCCEEEEECCCC-----------cCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHH
Confidence 233333333332 135899999987 38888888887766431 1233455555554443
No 311
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.53 E-value=8.6e-14 Score=140.98 Aligned_cols=111 Identities=18% Similarity=0.167 Sum_probs=76.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeee-eeEEEeecccCceeEEEEcCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA-SVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~-~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
+|+++|.+|+|||||++++....- .. .+.+ |+... ...+.+. +....+.+|||||+.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~--~~-----------~~~~-------t~~~~~~~~~~~~--~~~~~~~i~Dt~G~~ 60 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVF--IE-----------SYDP-------TIEDSYRKQVEID--GRQCDLEILDTAGTE 60 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--Cc-----------ccCC-------cchheEEEEEEEC--CEEEEEEEEeCCCcc
Confidence 589999999999999999963221 10 0100 11111 1112222 335788999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-----HHHhhcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-----FQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-----~~~~~~~~p~iiviNK~D~~ 142 (1021)
+|...+...++.+|++++|+|.++....+....| +.....++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 61 QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred cchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 9999999999999999999999875433333323 22224579999999999985
No 312
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.53 E-value=9.5e-14 Score=139.99 Aligned_cols=114 Identities=15% Similarity=0.138 Sum_probs=77.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeee--EEEeecccCceeEEEEcCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV--SIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~--~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+|+++|..++|||||+++|......... + .-.|+..... .+.+. .+....+.+|||||+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~-----------~-------~~~t~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~ 62 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPK-----------N-------YLMTTGCDFVVKEVPVD-TDNTVELFIFDSAGQ 62 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc-----------c-------CCCceEEEEEEEEEEeC-CCCEEEEEEEECCCH
Confidence 6899999999999999999642111110 0 0112222211 12222 244688999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh--cCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~--~~~p~iiviNK~D~~ 142 (1021)
..|...+...++.+|++++|+|.++.........| ..+.. .++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 63 ELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 99998899999999999999999875333322333 33332 368999999999984
No 313
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.53 E-value=1.2e-13 Score=153.58 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=78.9
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
+..+-.|+|+|.+|||||||+++|......+. ++ ...|..+....+.+.. ...+.++||
T Consensus 154 lk~~adV~lvG~pnaGKSTLl~~lt~~~~~va------------~y------~fTT~~p~ig~v~~~~---~~~~~i~D~ 212 (329)
T TIGR02729 154 LKLLADVGLVGLPNAGKSTLISAVSAAKPKIA------------DY------PFTTLVPNLGVVRVDD---GRSFVIADI 212 (329)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHhcCCcccc------------CC------CCCccCCEEEEEEeCC---ceEEEEEeC
Confidence 34567899999999999999999964322111 11 1234555544555551 378999999
Q ss_pred CCCCC-------cHHHHHHHhhccCeEEEEEeCCCC---CchhHHHHH-HHHhh-----cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVD-------FTIEVERSLRVLDGAVIIICASSG---IQPQTETVW-FQSQK-----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~-------f~~~~~~~l~~~D~~ilvvda~~g---~~~~t~~~~-~~~~~-----~~~p~iiviNK~D~~~ 143 (1021)
||+.+ +.....+.+..+|++|+|+|+++. ...+....| +.+.. .++|+++|+||+|+..
T Consensus 213 PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 213 PGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred CCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 99853 344556667789999999999864 122222223 33322 3689999999999864
No 314
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.53 E-value=1.1e-13 Score=139.51 Aligned_cols=111 Identities=18% Similarity=0.154 Sum_probs=75.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceee-eeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITIT-SASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~-~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
+|+++|.+|+|||||+++++.. .... .+.+ |+. .....+.. ++....++||||||+.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~--~~~~-----------~~~~-------t~~~~~~~~~~~--~~~~~~l~i~Dt~G~~ 60 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSG--TFIE-----------KYDP-------TIEDFYRKEIEV--DSSPSVLEILDTAGTE 60 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcC--CCCC-----------CCCC-------chhheEEEEEEE--CCEEEEEEEEECCCcc
Confidence 6999999999999999998732 1111 0000 110 00111112 2335678899999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh----cCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~----~~~p~iiviNK~D~~ 142 (1021)
.|...+..+++.+|++|+|+|.++....+....| ..+.. .++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 61 QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred cccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 9999999999999999999999875433322222 33322 579999999999974
No 315
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.53 E-value=1.1e-13 Score=156.79 Aligned_cols=116 Identities=15% Similarity=0.173 Sum_probs=80.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
..+-.|+|+|.+|||||||+++|......+.. ..+.|.......+.+.. ...+.|+|||
T Consensus 157 k~iadValVG~PNaGKSTLln~Lt~~k~~vs~------------------~p~TT~~p~~Giv~~~~---~~~i~~vDtP 215 (390)
T PRK12298 157 KLLADVGLLGLPNAGKSTFIRAVSAAKPKVAD------------------YPFTTLVPNLGVVRVDD---ERSFVVADIP 215 (390)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhCCcccccC------------------CCCCccCcEEEEEEeCC---CcEEEEEeCC
Confidence 34557999999999999999999743321111 12456666655555551 2469999999
Q ss_pred CCCC-------cHHHHHHHhhccCeEEEEEeCCC----CCchhHHHHHHHHhh-----cCCCEEEEEeCcCCC
Q psy5021 86 GHVD-------FTIEVERSLRVLDGAVIIICASS----GIQPQTETVWFQSQK-----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~-------f~~~~~~~l~~~D~~ilvvda~~----g~~~~t~~~~~~~~~-----~~~p~iiviNK~D~~ 142 (1021)
|..+ +.....+.+..+|++++|+|++. ....+...+++.+.. .+.|.++|+||+|+.
T Consensus 216 Gi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 216 GLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred CccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 9854 34556778899999999999872 122233344444443 368999999999985
No 316
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.53 E-value=5.3e-14 Score=141.40 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=101.5
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~ 731 (1021)
..++|.+++|||||+++|++..... . .....+.+.....+..++ ..+.+|||||+++|...+
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~~~~--------------~--~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~ 66 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENKFKE--------------D--SQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVT 66 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCC--------------C--CCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhH
Confidence 4578899999999999998743111 1 111222222223333333 467899999999999988
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
...++.+|++++|+|+++....+. ..++..... .++| +++++||+|+.+.... ..++...+.+..+ +
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~-----~ 137 (161)
T cd04113 67 RSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIV-VILVGNKSDLADQREV---TFLEASRFAQENG-----L 137 (161)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcchhccC---CHHHHHHHHHHcC-----C
Confidence 899999999999999998655433 333343333 3667 9999999998752111 1123344444443 5
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+++++||+++. |+.++++.+.+
T Consensus 138 ~~~~~Sa~~~~-----------~i~~~~~~~~~ 159 (161)
T cd04113 138 LFLETSALTGE-----------NVEEAFLKCAR 159 (161)
T ss_pred EEEEEECCCCC-----------CHHHHHHHHHH
Confidence 79999999873 88999988865
No 317
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.53 E-value=1.1e-13 Score=138.70 Aligned_cols=152 Identities=20% Similarity=0.139 Sum_probs=99.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.+.++|..++|||||+++|...... ....+.|..+ ..++.....+.+|||||+++|...+.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~---------------~~~pt~g~~~----~~~~~~~~~~~l~D~~G~~~~~~~~~ 62 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV---------------TTIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWR 62 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc---------------ccCCCCCcce----EEEEECCEEEEEEECCCCHhHHHHHH
Confidence 4578899999999999999753210 0111223222 23445678899999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 733 TGAAQMDGAILVCSAVDGP-MPQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
.+++.+|++|+|+|+++.. +.+..+++..+.. .+.| +++++||+|+.+... .+ ++...+....+....+
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~ 136 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV-LLVFANKQDLPNAMS-AA----EVTDKLGLHSLRNRNW 136 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCCC-HH----HHHHHhCccccCCCCE
Confidence 9999999999999998643 2333444433322 2456 999999999864211 11 2222221111122345
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.++++||++|. |+++++++|.+
T Consensus 137 ~~~~~Sak~g~-----------gv~~~~~~l~~ 158 (159)
T cd04150 137 YIQATCATSGD-----------GLYEGLDWLSN 158 (159)
T ss_pred EEEEeeCCCCC-----------CHHHHHHHHhc
Confidence 67899999884 89999998854
No 318
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.53 E-value=1.9e-13 Score=136.36 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=78.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|++++|||||+++|......... .+..+.......+.. ++....+++|||||+..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~ 61 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENY------------------KSTIGVDFKSKTIEI--DGKTVKLQIWDTAGQER 61 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCcc------------------CCceeeeeEEEEEEE--CCEEEEEEEEecCChHH
Confidence 6899999999999999999643221110 011111122222222 23367899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
|......+++.+|++++|+|+++.........| ..... .+.|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 62 FRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 999999999999999999999874333333333 33333 358999999999984
No 319
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.53 E-value=6.3e-14 Score=146.41 Aligned_cols=154 Identities=16% Similarity=0.092 Sum_probs=101.3
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC---CeEEEEEecCChhhhHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE---NKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~---~~~i~liDtpG~~~~~~~ 730 (1021)
+.++|.+++|||||+++|++.... .....+.| .+.....+..+ ...+.||||||+++|...
T Consensus 3 ivivG~~~vGKTsli~~l~~~~~~--------------~~~~~t~~--~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~ 66 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVHGIFS--------------QHYKATIG--VDFALKVIEWDPNTVVRLQLWDIAGQERFGGM 66 (201)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCC--------------CCCCCcee--EEEEEEEEEECCCCEEEEEEEECCCchhhhhh
Confidence 567889999999999999974311 01111222 23322333333 456789999999999988
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHH-------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTR-EHILLARQ-------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~-e~l~~~~~-------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
+..+++.+|++|+|+|.++....+.. +++..+.. .++| +|+|+||+|+.+... ...+++.++++..++
T Consensus 67 ~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~ 142 (201)
T cd04107 67 TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIP-CLLLANKCDLKKRLA---KDGEQMDQFCKENGF 142 (201)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCc-EEEEEECCCcccccc---cCHHHHHHHHHHcCC
Confidence 88999999999999999875433322 22222221 3567 899999999963111 112345555555543
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++|. |+++++++|.+.+
T Consensus 143 ----~~~~e~Sak~~~-----------~v~e~f~~l~~~l 167 (201)
T cd04107 143 ----IGWFETSAKEGI-----------NIEEAMRFLVKNI 167 (201)
T ss_pred ----ceEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 468999999873 7788887776544
No 320
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.53 E-value=7.7e-14 Score=143.07 Aligned_cols=118 Identities=15% Similarity=0.109 Sum_probs=79.6
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec--------ccCcee
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV--------NKFKYM 78 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--------~~~~~~ 78 (1021)
...+|+++|..|+|||||++++....-. . . ....+........+.+.. .+....
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~--~-----------~-----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFN--P-----------K-----FITTVGIDFREKRVVYNSSGPGGTLGRGQRIH 64 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--c-----------c-----CCCccceEEEEEEEEEcCccccccccCCCEEE
Confidence 4578999999999999999999632110 0 0 000111111111222221 123578
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHhh----cCCCEEEEEeCcCCC
Q psy5021 79 INIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 79 i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~~----~~~p~iiviNK~D~~ 142 (1021)
+.||||||+..|...+...++.+|++|+|+|+++....+....|. .... .+.|+++|.||+|+.
T Consensus 65 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 65 LQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred EEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 999999999999999999999999999999998754444443342 2222 368999999999985
No 321
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.53 E-value=1.2e-13 Score=142.98 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=81.3
Q ss_pred EeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCcHHH
Q psy5021 14 IAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIE 93 (1021)
Q Consensus 14 iG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~ 93 (1021)
+|..++|||||+.+++. +... .+...|+.....+..+..++....+++|||||+.+|...
T Consensus 1 vG~~~vGKTsLi~r~~~--~~f~------------------~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l 60 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT--GEFE------------------KKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60 (200)
T ss_pred CCCCCCCHHHHHHHHhc--CCCC------------------CCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 58999999999999963 1111 112235544444444444445789999999999999999
Q ss_pred HHHHhhccCeEEEEEeCCCCCchhHHHHHHH-Hhh--cCCCEEEEEeCcCCC
Q psy5021 94 VERSLRVLDGAVIIICASSGIQPQTETVWFQ-SQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 94 ~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~~~--~~~p~iiviNK~D~~ 142 (1021)
+..+++.+|++|+|+|.++....+....|.. +.+ .++|+++|+||+|+.
T Consensus 61 ~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 61 RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred hHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 9999999999999999998866665555644 333 479999999999974
No 322
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.53 E-value=1.5e-13 Score=145.12 Aligned_cols=117 Identities=20% Similarity=0.101 Sum_probs=82.6
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
....+|+++|..|+|||||+++++...- .. +...|+........+..++....+++||||
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f--~~------------------~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~ 70 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK------------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTA 70 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCC--CC------------------ccCCccceeEEEEEEEECCeEEEEEEEECC
Confidence 3456899999999999999999863211 00 011133222222333333346899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-Hh--hcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-SQ--KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~~--~~~~p~iiviNK~D~~ 142 (1021)
|+.+|...+..+++.+|++|+|+|.++....+...-|.. +. ..++|+++|+||+|+.
T Consensus 71 G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred CchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 999999888889999999999999998755555444522 22 3479999999999984
No 323
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.52 E-value=7.8e-14 Score=140.79 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=102.3
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+.++|.+++|||||+++|++..... ...+ .++.+.....+..++ ..+.+|||||+++|..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~--t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 67 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNL--------------DSKS--TIGVEFATRSIQIDGKTIKAQIWDTAGQERYRA 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCC--ccceEEEEEEEEECCEEEEEEEEeCCChHHHHH
Confidence 457789999999999999998743111 1112 223333333344444 4678999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.+..++..+|++|+|+|+++....+. .+++..+... ++| +++|+||+|+.+.... ..++...++...
T Consensus 68 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~~~---~~~~~~~~~~~~----- 138 (165)
T cd01868 68 ITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAV---PTEEAKAFAEKN----- 138 (165)
T ss_pred HHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccccC---CHHHHHHHHHHc-----
Confidence 88888999999999999986443322 2333333332 466 9999999998752211 112333333332
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.++++++||++|. |++++++.|.+.
T Consensus 139 ~~~~~~~Sa~~~~-----------~v~~l~~~l~~~ 163 (165)
T cd01868 139 GLSFIETSALDGT-----------NVEEAFKQLLTE 163 (165)
T ss_pred CCEEEEEECCCCC-----------CHHHHHHHHHHH
Confidence 2579999999873 889999988653
No 324
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.52 E-value=5.9e-14 Score=155.48 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=94.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-+++|+|.||+|||||+|+|+.+..+|.. ...|.|.+.-...+..+ ++.+.++||+|..
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVT-----------------dI~GTTRDviee~i~i~----G~pv~l~DTAGiR 276 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVT-----------------DIAGTTRDVIEEDINLN----GIPVRLVDTAGIR 276 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEec-----------------CCCCCccceEEEEEEEC----CEEEEEEecCCcc
Confidence 46999999999999999999988888776 24577777777788888 9999999999986
Q ss_pred CcHHH--------HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 89 DFTIE--------VERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 89 ~f~~~--------~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
+-... ...++..||.+++|+|++.+...+...++. +...+.|+++|+||+|+...
T Consensus 277 et~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 277 ETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred cCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccc
Confidence 54333 445678999999999999987777777766 66678999999999999643
No 325
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.52 E-value=6.9e-14 Score=121.65 Aligned_cols=81 Identities=28% Similarity=0.475 Sum_probs=75.0
Q ss_pred eeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccc
Q psy5021 853 FLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERG 932 (1021)
Q Consensus 853 ~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G 932 (1021)
|||+|+++|+.++.|++++|+|++|.+++||++.+.|.+. .++|++|+.++.++++|.|||+|+++|++ ..++++|
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~--~~~V~si~~~~~~~~~a~aGd~v~l~l~~--~~~i~~G 76 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGK--TSRVKSIETFDGELDEAGAGESVTLTLED--EIDVSRG 76 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCC--eEEEEEEEECCcEeCEEcCCCEEEEEECC--ccccCCC
Confidence 6899999999988888899999999999999999999754 58999999999999999999999999984 7889999
Q ss_pred eEEee
Q psy5021 933 QVLAK 937 (1021)
Q Consensus 933 ~vl~~ 937 (1021)
+|||.
T Consensus 77 ~vl~~ 81 (81)
T cd03695 77 DVIVA 81 (81)
T ss_pred CEEeC
Confidence 99974
No 326
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.52 E-value=3.5e-14 Score=139.45 Aligned_cols=96 Identities=21% Similarity=0.139 Sum_probs=66.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC-
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV- 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~- 88 (1021)
+|+++|++|+|||||+++|..... . ...|+ .+.|. . .+|||||+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~---------------~-------~~~t~-----~~~~~----~---~~iDt~G~~~ 47 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI---------------L-------YKKTQ-----AVEYN----D---GAIDTPGEYV 47 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc---------------c-------cccce-----eEEEc----C---eeecCchhhh
Confidence 799999999999999999952210 0 00121 23343 2 689999983
Q ss_pred ---CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 89 ---DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ---~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
.+......+++.+|++|+|+|++++...+...++.. .+.|+++++||+|+.
T Consensus 48 ~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 48 ENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLA 101 (142)
T ss_pred hhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccC
Confidence 233333456789999999999998876665433332 245999999999985
No 327
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.52 E-value=9.6e-14 Score=140.48 Aligned_cols=156 Identities=19% Similarity=0.155 Sum_probs=101.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.+.++|.+++|||||++++++.... .......|.+.......+......+.+|||||+++|....
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~--------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~ 69 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFN--------------PSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTIT 69 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCC--------------cccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence 56778899999999999999874311 1111222333322222232223467899999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
...++.+|++++|+|++++...+. .+++..+... ++| +++|+||+|+.+.... ..++...+.+..+ .
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~ 140 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKRVV---SKEEGEALADEYG-----I 140 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECcccccccCC---CHHHHHHHHHHcC-----C
Confidence 888899999999999987543322 3333333332 567 8999999999752211 1122333444333 4
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++||++| .+++++++.+.+.
T Consensus 141 ~~~~~Sa~~~-----------~~v~~~~~~i~~~ 163 (167)
T cd01867 141 KFLETSAKAN-----------INVEEAFFTLAKD 163 (167)
T ss_pred EEEEEeCCCC-----------CCHHHHHHHHHHH
Confidence 7899999987 3888888887653
No 328
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.52 E-value=9.2e-14 Score=140.02 Aligned_cols=153 Identities=17% Similarity=0.120 Sum_probs=99.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+..+++|.+++|||||++++++..... ......+ +.....+..++ ..+.+|||||+++|..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~--------------~~~~t~~---~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 65 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVT--------------DYDPTIE---DSYTKQCEIDGQWAILDILDTAGQEEFSA 65 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCc--------------ccCCCcc---ceEEEEEEECCEEEEEEEEECCCCcchhH
Confidence 456788999999999999998743110 0001111 11111222333 4678899999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..+++.+|++++|+|+++....+. ..++..+.. .++| +++++||+|+....... .++..++++..+
T Consensus 66 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~~~~~---~~~~~~~~~~~~--- 138 (164)
T cd04145 66 MREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFP-MILVGNKADLEHQRKVS---REEGQELARKLK--- 138 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCC-EEEEeeCccccccceec---HHHHHHHHHHcC---
Confidence 88899999999999999987543222 233333222 3677 89999999986522111 123344444433
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||++|. |++++++.|...
T Consensus 139 --~~~~~~Sa~~~~-----------~i~~l~~~l~~~ 162 (164)
T cd04145 139 --IPYIETSAKDRL-----------NVDKAFHDLVRV 162 (164)
T ss_pred --CcEEEeeCCCCC-----------CHHHHHHHHHHh
Confidence 468999999873 889999988653
No 329
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.52 E-value=1.6e-13 Score=142.87 Aligned_cols=117 Identities=17% Similarity=0.213 Sum_probs=80.3
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+..++|+++|++|+|||||+++|+..... .. . ....|.|...... .+ +..+.|||
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~-~~---~------------~~~~~~t~~~~~~--~~-----~~~l~l~D 76 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNL-AR---T------------SKTPGRTQLINFF--EV-----NDKLRLVD 76 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-cc---c------------cCCCCceeEEEEE--ec-----CCeEEEeC
Confidence 5677899999999999999999999742210 00 0 0112334332211 11 36799999
Q ss_pred CCCCC----------CcHHHHHHHhhc---cCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 84 TPGHV----------DFTIEVERSLRV---LDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 84 tPG~~----------~f~~~~~~~l~~---~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|||+. .|......+++. ++++++|+|+..+.......+++.+...++|+++++||+|+..
T Consensus 77 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 77 LPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLK 149 (196)
T ss_pred CCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCC
Confidence 99963 233334444444 4688899999888777776777777778999999999999853
No 330
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.52 E-value=1.1e-13 Score=142.04 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=77.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
|+|+++|++|+|||||+++|+........ . .. +.......+.+. +..+.+.+|||||+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~----~------~t---------~~~~~~~~~~~~--~~~~~~~l~D~~g~~ 60 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY----Y------PT---------IENTFSKIIRYK--GQDYHLEIVDTAGQD 60 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccc----C------cc---------hhhhEEEEEEEC--CEEEEEEEEECCChH
Confidence 78999999999999999999742211000 0 00 000001112222 235778999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHH-HHHH----hhcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETV-WFQS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~-~~~~----~~~~~p~iiviNK~D~~ 142 (1021)
+|......++..+|++++|+|.++....+.... |... ...++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 61 EYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred hhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 999999999999999999999998654443333 2333 23468999999999975
No 331
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.52 E-value=1.5e-13 Score=158.72 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=86.9
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-.+|+++|++|+|||||+++|+....++.. ...|.|.+.....+.++ ++.+++|||||+
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs-----------------~~pgtTrd~~~~~i~~~----g~~v~l~DTaG~ 261 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVS-----------------DIKGTTRDVVEGDFELN----GILIKLLDTAGI 261 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccC-----------------CCCCcEEEEEEEEEEEC----CEEEEEeeCCCc
Confidence 357999999999999999999754333221 12456666666667777 788999999999
Q ss_pred CCcHHH--------HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 88 VDFTIE--------VERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~--------~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
.++... ...+++.+|++|+|+|++++...... .+..+...++|+++|+||+|+..
T Consensus 262 ~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 262 REHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKI 324 (442)
T ss_pred ccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCC
Confidence 776543 34577899999999999987765554 55666667899999999999853
No 332
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.52 E-value=2.8e-14 Score=150.86 Aligned_cols=158 Identities=16% Similarity=0.228 Sum_probs=117.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhC-ceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERG-ITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rg-iTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..-+.|+++|++|+|||||++.|+...... +.. ...| +++ .... +.+++++||
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~----------~~~------~~~g~i~i------~~~~----~~~i~~vDt 90 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ----------NIS------DIKGPITV------VTGK----KRRLTFIEC 90 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccC----------ccc------cccccEEE------EecC----CceEEEEeC
Confidence 345779999999999999999997432110 000 1122 121 1112 678999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEE-EEeCcCCCCC--CHHHHHHHHHHHhCCc-
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMI-FVNKMDRIGA--NYNNCIIDIKKKFNCI- 160 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~ii-viNK~D~~~~--~~~~~~~~i~~~l~~~- 160 (1021)
||+. ..+..+++.+|.+++|+|+..+...++..+|..+...++|.++ |+||+|+... ..++...++++.+...
T Consensus 91 Pg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~ 167 (225)
T cd01882 91 PNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEV 167 (225)
T ss_pred CchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhh
Confidence 9975 6677788999999999999999999999999999888999655 9999999643 2455666776654321
Q ss_pred -----ee------eeeeecccCCceeeEEecccceeeeecCCC
Q psy5021 161 -----VL------PINFNIGIEENYEGIVDIINKKSFFWKENS 192 (1021)
Q Consensus 161 -----~~------~~~~p~~~~~~~~g~id~~~~~~~~~~~~~ 192 (1021)
.. ++++|..++..|.+++++++++.+.|.+..
T Consensus 168 ~~~~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~~r 210 (225)
T cd01882 168 YQGAKLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRNSH 210 (225)
T ss_pred CCCCcEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeecCC
Confidence 22 345688888899999999999999997655
No 333
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.52 E-value=1.6e-13 Score=143.93 Aligned_cols=109 Identities=18% Similarity=0.131 Sum_probs=79.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..++|||||+++|+...- . ++ ..|+........+. .+.+++|||||+..
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f--~------------~~-------~~Tig~~~~~~~~~----~~~l~iwDt~G~e~ 56 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF--K------------DT-------VSTVGGAFYLKQWG----PYNISIWDTAGREQ 56 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC--C------------CC-------CCccceEEEEEEee----EEEEEEEeCCCccc
Confidence 689999999999999999963211 0 00 11333333333455 78899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HHHHHh---hcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTET-VWFQSQ---KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~~~~~---~~~~p~iiviNK~D~~~ 143 (1021)
|......+++.+|++|+|+|+++........ .|..+. ..++|+|+|.||+|+..
T Consensus 57 ~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 57 FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred chhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 9999999999999999999999754333332 233332 24689999999999863
No 334
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.51 E-value=1.2e-13 Score=140.14 Aligned_cols=153 Identities=15% Similarity=0.025 Sum_probs=100.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+....+|.+++|||||++++++.... .+....++.+.....+..++ ..+.||||||+++|..
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~ 69 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFD----------------TQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS 69 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC----------------cCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH
Confidence 45678889999999999999863211 11111222333223333334 4567899999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHH-------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTR-EHILLARQ-------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~-e~l~~~~~-------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
.+..+++.+|++++|+|.++....+.. ++...+.. .++| +++++||+|+..... ..+++.++++..+
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~----~~~~~~~~~~~~~ 144 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDIPERQV----STEEAQAWCRENG 144 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCc-EEEEEECcccccccc----CHHHHHHHHHHCC
Confidence 888899999999999999875432222 22222221 2467 899999999864111 1234445555444
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
. .+++++||++|. ++.++++.+.+
T Consensus 145 ~----~~~~e~Sa~~~~-----------~v~~~~~~~~~ 168 (170)
T cd04116 145 D----YPYFETSAKDAT-----------NVAAAFEEAVR 168 (170)
T ss_pred C----CeEEEEECCCCC-----------CHHHHHHHHHh
Confidence 2 478999999873 88888888764
No 335
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.51 E-value=2.2e-13 Score=139.95 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=82.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+...+|+++|..++|||||+.++.... ... +....++......++.. ++..+.+++||||
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~--~~~----------------~~~~t~~~~~~~~~i~~--~~~~~~l~iwDt~ 63 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGS--TES----------------PYGYNMGIDYKTTTILL--DGRRVKLQLWDTS 63 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCC--CCC----------------CCCCcceeEEEEEEEEE--CCEEEEEEEEeCC
Confidence 456789999999999999999996311 100 00111222221122222 2346889999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh--hcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ--KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~--~~~~p~iiviNK~D~~ 142 (1021)
|+.+|...+..+++.+|++|+|+|.++....+....| ..+. ..+.|+|++.||+|+.
T Consensus 64 G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 64 GQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred CcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 9999999999999999999999999986554444444 3332 2478999999999984
No 336
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.51 E-value=2.6e-13 Score=135.32 Aligned_cols=111 Identities=18% Similarity=0.157 Sum_probs=80.7
Q ss_pred EEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCcH-
Q psy5021 13 IIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFT- 91 (1021)
Q Consensus 13 iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~- 91 (1021)
|+|+.|+|||||+++|........ ...++.|.........+.. ...+.+|||||+.++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~---~~~~~~~Dt~g~~~~~~ 60 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIV-----------------SPVPGTTTDPVEYVWELGP---LGPVVLIDTPGIDEAGG 60 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccccc-----------------CCCCCcEECCeEEEEEecC---CCcEEEEECCCCCcccc
Confidence 589999999999999964322110 0122334443333333321 5689999999998775
Q ss_pred ------HHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 92 ------IEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 92 ------~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
..+...++.+|++++|+|+..........++......+.|+++++||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 61 LGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLP 118 (163)
T ss_pred chhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCC
Confidence 3455678999999999999998877777666777788999999999999864
No 337
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.51 E-value=1.3e-13 Score=142.54 Aligned_cols=111 Identities=21% Similarity=0.299 Sum_probs=75.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeee-eeEEEeecccCceeEEEEcCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA-SVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~-~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.|+++|..|+|||||+++|.... ... ++.+ |+... ...+.+. +..+.+++|||||+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~--f~~-----------~~~~-------t~~~~~~~~~~~~--~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH--FVE-----------TYDP-------TIEDSYRKQVVVD--GQPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCc-----------cCCC-------chHhhEEEEEEEC--CEEEEEEEEECCCch
Confidence 38899999999999999997421 111 0000 11100 0111222 234678999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh------cCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK------YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~------~~~p~iiviNK~D~~ 142 (1021)
+|......+++.+|++|+|+|.++.........| ..+.. .++|+++|+||+|+.
T Consensus 59 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 59 EYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred hhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 9999999999999999999999875433332223 33321 468999999999985
No 338
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.51 E-value=1e-13 Score=140.09 Aligned_cols=154 Identities=16% Similarity=0.111 Sum_probs=102.2
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+...++|.+++|||||++++++.... .+...+.+.+.....+..++ ..+.+|||||+++|..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 66 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYT----------------ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 66 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHH
Confidence 35678899999999999999874311 11112223333333343343 4678999999999998
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.....++.+|++|+|+|+++... .+..+++..+... ++| ++++.||+|+.+..... .++...+.+..+
T Consensus 67 ~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 138 (166)
T cd01869 67 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTDKRVVD---YSEAQEFADELG---- 138 (166)
T ss_pred HHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEEChhcccccCCC---HHHHHHHHHHcC----
Confidence 88888999999999999987432 2233444444332 467 89999999986522111 122333443333
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||++|. |++++++.|.+.
T Consensus 139 -~~~~~~Sa~~~~-----------~v~~~~~~i~~~ 162 (166)
T cd01869 139 -IPFLETSAKNAT-----------NVEQAFMTMARE 162 (166)
T ss_pred -CeEEEEECCCCc-----------CHHHHHHHHHHH
Confidence 579999999873 888888888653
No 339
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.51 E-value=2.9e-13 Score=137.26 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=78.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.|+++|..++|||||+++++...- .. +...|+........+..++....+++|||||+.+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f--~~------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF--DK------------------NYKATIGVDFEMERFEILGVPFSLQLWDTAGQER 61 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CC------------------CCCCceeeEEEEEEEEECCEEEEEEEEeCCChHH
Confidence 588999999999999999974211 00 0112333333222233334467899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHhhc----CCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQKY----KVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~~~----~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++++|+|+++........-|. ...+. ..|+++|.||+|+.
T Consensus 62 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 62 FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred HHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 9999999999999999999998743333333343 33222 35689999999984
No 340
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.51 E-value=6.3e-14 Score=171.18 Aligned_cols=154 Identities=21% Similarity=0.247 Sum_probs=112.8
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+..+++.+|++|+|||||+|+|++.... ..+..|+|++.....+++++..+.++||||+.+|..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~----------------vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~ 65 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQR----------------VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCc----------------cCCCCCceEeeEEEEEEcCceEEEEEECCCcccccc
Confidence 4567899999999999999999974321 223468999998888999899999999999987642
Q ss_pred H----------HHHHh--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 730 N----------MITGA--AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 730 ~----------~~~~~--~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
. ...++ ..+|++++|+|+++... ....+..+.++++| +++++||+|+.+... . ..+++++.
T Consensus 66 ~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giP-vIvVlNK~Dl~~~~~-i---~id~~~L~ 138 (772)
T PRK09554 66 ISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIP-CIVALNMLDIAEKQN-I---RIDIDALS 138 (772)
T ss_pred ccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCC-EEEEEEchhhhhccC-c---HHHHHHHH
Confidence 1 11222 37899999999987433 33455566778999 899999999864221 1 12333344
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+.+| ++++++||.++ +|++++++.+.+..
T Consensus 139 ~~LG-----~pVvpiSA~~g-----------~GIdeL~~~I~~~~ 167 (772)
T PRK09554 139 ARLG-----CPVIPLVSTRG-----------RGIEALKLAIDRHQ 167 (772)
T ss_pred HHhC-----CCEEEEEeecC-----------CCHHHHHHHHHHhh
Confidence 4444 57899999987 37888888887643
No 341
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.51 E-value=1.8e-13 Score=141.96 Aligned_cols=113 Identities=16% Similarity=0.159 Sum_probs=72.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+|+|..|+|||||+++++...- .. .+.+ .++.......+.+. +..+.+++|||||+.+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f--~~-----------~~~p-----t~~~~~~~~~i~~~--~~~~~l~i~Dt~G~~~ 61 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF--PE-----------EYIP-----TEHRRLYRPAVVLS--GRVYDLHILDVPNMQR 61 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC--Cc-----------ccCC-----ccccccceeEEEEC--CEEEEEEEEeCCCccc
Confidence 689999999999999999964211 00 0000 11111111122233 3357899999999876
Q ss_pred cH----HH----HHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh------hcCCCEEEEEeCcCCC
Q psy5021 90 FT----IE----VERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ------KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~----~~----~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~------~~~~p~iiviNK~D~~ 142 (1021)
|. .+ ...+++.+|++|+|+|+++....+....| +.+. ..++|+++|+||+|+.
T Consensus 62 ~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 62 YPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred CCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 52 11 34568899999999999986544433333 2222 2568999999999985
No 342
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.51 E-value=1.1e-13 Score=139.17 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=102.1
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
...++|.+++|||||+++|++.... ....+..|.+.......+......+.+|||||+++|.....
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 67 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFD--------------PDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTS 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC--------------cccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhH
Confidence 4567899999999999999874311 11233344444433333333335688999999999988888
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTR-EHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~-e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..++.+|++++|+|+++....+.. .++..+.. .+.| +++++||+|+....... ++...+.+.. ++
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~~~----~~~~~~~~~~-----~~ 137 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIV-KMLVGNKIDKENREVTR----EEGLKFARKH-----NM 137 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCc-EEEEEECCcccccccCH----HHHHHHHHHc-----CC
Confidence 888999999999999875443332 23333333 3566 88899999997422111 2233333333 35
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+++++||++| +|++++++.+.+
T Consensus 138 ~~~~~Sa~~~-----------~gi~~~~~~~~~ 159 (161)
T cd01863 138 LFIETSAKTR-----------DGVQQAFEELVE 159 (161)
T ss_pred EEEEEecCCC-----------CCHHHHHHHHHH
Confidence 7999999987 388888888754
No 343
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.51 E-value=1.2e-13 Score=139.06 Aligned_cols=151 Identities=15% Similarity=0.113 Sum_probs=97.9
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.+.++|.+++|||||++++....... ....+.+ +.....+..++ ..+.||||||+++|...
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~--------------~~~~t~~---~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGIFVE--------------KYDPTIE---DSYRKQIEVDGQQCMLEILDTAGTEQFTAM 65 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc--------------ccCCchh---hhEEEEEEECCEEEEEEEEECCCccccchH
Confidence 46788999999999999999643110 0001111 11112233333 45678999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++++|+|.++... .....++..+.. .++| +|+++||+|+.+..... .++...+.+.++
T Consensus 66 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 137 (163)
T cd04136 66 RDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVP-MVLVGNKCDLEDERVVS---REEGQALARQWG---- 137 (163)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceec---HHHHHHHHHHcC----
Confidence 8888999999999999987433 223333333333 2567 89999999986522111 122233333332
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+++++||++|. |+.+++++|.+
T Consensus 138 -~~~~~~Sa~~~~-----------~v~~l~~~l~~ 160 (163)
T cd04136 138 -CPFYETSAKSKI-----------NVDEVFADLVR 160 (163)
T ss_pred -CeEEEecCCCCC-----------CHHHHHHHHHH
Confidence 579999999873 88999998865
No 344
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.51 E-value=1.3e-13 Score=153.18 Aligned_cols=159 Identities=19% Similarity=0.237 Sum_probs=103.8
Q ss_pred ccccc-ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC-eEEEEEecCCh
Q psy5021 647 TDLRS-NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN-KHYAHVDCPGH 724 (1021)
Q Consensus 647 ~~l~~-~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-~~i~liDtpG~ 724 (1021)
-+|+. ..+|++|++|+|||||+++|+.....+...+ .+|..+....++..+ ..+.||||||+
T Consensus 152 lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~----------------fTT~~p~ig~v~~~~~~~~~i~D~PGl 215 (329)
T TIGR02729 152 LELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYP----------------FTTLVPNLGVVRVDDGRSFVIADIPGL 215 (329)
T ss_pred EEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCC----------------CCccCCEEEEEEeCCceEEEEEeCCCc
Confidence 34554 4789999999999999999998543332222 234444444555555 78999999997
Q ss_pred hh-------hHHHHHHHhhhCCEEEEEEECCCC----CcHHHHHHHHHHHH-----cCCCeEEEEEeeccccchhhHHHH
Q psy5021 725 AD-------YIKNMITGAAQMDGAILVCSAVDG----PMPQTREHILLARQ-----VGVPNIVVFLNKADCVQDKELLDL 788 (1021)
Q Consensus 725 ~~-------~~~~~~~~~~~aD~ailVvDa~~g----~~~qt~e~l~~~~~-----~~ip~iIvviNK~Dl~~~~~~~~~ 788 (1021)
.. ....+.+.+..+|++++|+|+++. ...+...+...+.. .+.| ++||+||+|+.+... .+.
T Consensus 216 i~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp-~IIV~NK~DL~~~~~-~~~ 293 (329)
T TIGR02729 216 IEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKP-RIVVLNKIDLLDEEE-LAE 293 (329)
T ss_pred ccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCC-EEEEEeCccCCChHH-HHH
Confidence 42 344556667789999999999864 12222222222322 2566 888999999976322 222
Q ss_pred HHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 789 VEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 789 ~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
. .+.+.+.++ .+++++||+++ +++++|+++|.+.+
T Consensus 294 ~---~~~l~~~~~-----~~vi~iSAktg-----------~GI~eL~~~I~~~l 328 (329)
T TIGR02729 294 L---LKELKKALG-----KPVFPISALTG-----------EGLDELLYALAELL 328 (329)
T ss_pred H---HHHHHHHcC-----CcEEEEEccCC-----------cCHHHHHHHHHHHh
Confidence 2 222322332 46899999987 48999999887643
No 345
>KOG0084|consensus
Probab=99.51 E-value=9.1e-14 Score=135.40 Aligned_cols=153 Identities=18% Similarity=0.147 Sum_probs=109.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~~~~~~~ 730 (1021)
-.-+.|.+++|||.|+-++.. ++.+++....+.+|.....++.+++ ++.+|||+|+++|...
T Consensus 11 KiiliGds~VGKtCL~~Rf~~----------------~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrti 74 (205)
T KOG0084|consen 11 KIILIGDSGVGKTCLLLRFKD----------------DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTI 74 (205)
T ss_pred EEEEECCCCcChhhhhhhhcc----------------CCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhh
Confidence 345677799999999999987 3444555555556666666666554 5788999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
+.+++++|+++|+|+|.++-... ....++..+... ++| .++|.||+|+.+..... .++.+++...++
T Consensus 75 t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~-~lLVGNK~Dl~~~~~v~---~~~a~~fa~~~~----- 145 (205)
T KOG0084|consen 75 TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVP-KLLVGNKCDLTEKRVVS---TEEAQEFADELG----- 145 (205)
T ss_pred hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCC-eEEEeeccccHhheecC---HHHHHHHHHhcC-----
Confidence 99999999999999999985443 334455555554 567 77899999997632211 123345555555
Q ss_pred eE-EEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 807 TK-IVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 807 ~~-ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+ ++++||+.+. ++++.+..|...
T Consensus 146 ~~~f~ETSAK~~~-----------NVe~~F~~la~~ 170 (205)
T KOG0084|consen 146 IPIFLETSAKDST-----------NVEDAFLTLAKE 170 (205)
T ss_pred CcceeecccCCcc-----------CHHHHHHHHHHH
Confidence 34 9999999763 666666666543
No 346
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.51 E-value=1.2e-13 Score=138.61 Aligned_cols=150 Identities=15% Similarity=0.068 Sum_probs=97.9
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.+.++|.+++|||||+++|++..... ......+.+. ...+..++ ..+.+|||||+++|...
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~~--------------~~~~t~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~~~l 65 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFVD--------------EYDPTIEDSY---RKQVVIDGETCLLDILDTAGQEEYSAM 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcC--------------CcCCcchheE---EEEEEECCEEEEEEEEECCCCcchHHH
Confidence 45678999999999999999743110 0001111111 12223333 45778999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++++|+|.++....+. ..++..+.. .++| +++|+||+|+.+.... ..+...+.+..+
T Consensus 66 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~----~~~~~~~~~~~~---- 136 (162)
T cd04138 66 RDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDLAARTVS----SRQGQDLAKSYG---- 136 (162)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccceec----HHHHHHHHHHhC----
Confidence 9999999999999999987433222 223332322 2567 8999999998752211 123333444333
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+++++||++|. |+++++++|.+
T Consensus 137 -~~~~~~Sa~~~~-----------gi~~l~~~l~~ 159 (162)
T cd04138 137 -IPYIETSAKTRQ-----------GVEEAFYTLVR 159 (162)
T ss_pred -CeEEEecCCCCC-----------CHHHHHHHHHH
Confidence 478999999873 88999988865
No 347
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.50 E-value=1.1e-13 Score=140.35 Aligned_cols=154 Identities=18% Similarity=0.127 Sum_probs=102.1
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.++|..++|||||+++|.+.... .... |+......++..+..+.+|||||+.+|...+..
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~~~---------------~~~~----T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~ 62 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFM---------------QPIP----TIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKH 62 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC---------------CcCC----cCceeEEEEEECCEEEEEEECCCChhcchHHHH
Confidence 457889999999999999874210 0011 222222345566788999999999999888889
Q ss_pred HhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc-CCCce
Q psy5021 734 GAAQMDGAILVCSAVDGP-MPQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF-DGENT 807 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 807 (1021)
+++.+|++++|+|+++.. +....+++..+.. .+.| +++|+||+|+.+. ... .++.++++..++ ....+
T Consensus 63 ~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~~----~~~~~~~~~~~~~~~~~~ 136 (169)
T cd04158 63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDAL-LLIFANKQDVAGA-LSV----EEMTELLSLHKLCCGRSW 136 (169)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccC-CCH----HHHHHHhCCccccCCCcE
Confidence 999999999999998743 2233344433322 1356 9999999998642 111 223333322221 11235
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.++++||++|. |+++++++|.+.+.
T Consensus 137 ~~~~~Sa~~g~-----------gv~~~f~~l~~~~~ 161 (169)
T cd04158 137 YIQGCDARSGM-----------GLYEGLDWLSRQLV 161 (169)
T ss_pred EEEeCcCCCCC-----------CHHHHHHHHHHHHh
Confidence 78899999884 88999999976543
No 348
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.50 E-value=1.6e-13 Score=138.80 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=100.5
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+...++|..++|||||+++|.+..-. .......|.+.......+......+.+|||||+++|...+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--------------ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 34567899999999999999874211 1111122333322222332223467899999999999999
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..+++.+|++|+|+|+++....+. .+++...... +.| +++|.||+|+.+..... .++..++++..+ .
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~ 139 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IFLIGNKADLEAQRDVT---YEEAKQFADENG-----L 139 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCcC---HHHHHHHHHHcC-----C
Confidence 999999999999999987543333 3343333332 345 89999999997532111 123333444333 5
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+++++||++|. |+.++++.+..
T Consensus 140 ~~~e~Sa~~~~-----------~i~e~f~~l~~ 161 (166)
T cd04122 140 LFLECSAKTGE-----------NVEDAFLETAK 161 (166)
T ss_pred EEEEEECCCCC-----------CHHHHHHHHHH
Confidence 79999999883 78888777654
No 349
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.50 E-value=2.6e-13 Score=156.02 Aligned_cols=116 Identities=13% Similarity=0.140 Sum_probs=80.0
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
+..+..|+|+|.+|||||||+++|......+ .| ..+.|+.+....+.+. +..+.++||
T Consensus 156 Lk~~adV~LVG~PNAGKSTLln~Ls~akpkI------------ad------ypfTTl~P~lGvv~~~----~~~f~laDt 213 (500)
T PRK12296 156 LKSVADVGLVGFPSAGKSSLISALSAAKPKI------------AD------YPFTTLVPNLGVVQAG----DTRFTVADV 213 (500)
T ss_pred ecccceEEEEEcCCCCHHHHHHHHhcCCccc------------cc------cCcccccceEEEEEEC----CeEEEEEEC
Confidence 4456789999999999999999996432211 11 2345777776667777 788999999
Q ss_pred CCCCCc-------HHHHHHHhhccCeEEEEEeCCCC---C--chhHH----HHHHHH----------hhcCCCEEEEEeC
Q psy5021 85 PGHVDF-------TIEVERSLRVLDGAVIIICASSG---I--QPQTE----TVWFQS----------QKYKVPKMIFVNK 138 (1021)
Q Consensus 85 PG~~~f-------~~~~~~~l~~~D~~ilvvda~~g---~--~~~t~----~~~~~~----------~~~~~p~iiviNK 138 (1021)
||..+- ..+..+.+..+|++|+|||++.. . ..... ++.... ...+.|+|+|+||
T Consensus 214 PGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNK 293 (500)
T PRK12296 214 PGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNK 293 (500)
T ss_pred CCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEEC
Confidence 997532 23456677889999999999741 1 11111 122222 2246899999999
Q ss_pred cCCC
Q psy5021 139 MDRI 142 (1021)
Q Consensus 139 ~D~~ 142 (1021)
+|++
T Consensus 294 iDL~ 297 (500)
T PRK12296 294 IDVP 297 (500)
T ss_pred ccch
Confidence 9985
No 350
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.50 E-value=1.1e-13 Score=140.16 Aligned_cols=154 Identities=17% Similarity=0.053 Sum_probs=101.8
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
......+|.+++|||||+++|++..... .....++.+.....+...+ ..+.+||+||+++|.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 70 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPP----------------GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR 70 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCC----------------CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH
Confidence 3678899999999999999998632110 0111222333444444555 457889999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++++|+|++++...+. ..++..+.. .++| +++++||+|+.+..+......+.+. +..
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-~i~v~NK~D~~~~~~i~~~~~~~~~---~~~---- 142 (169)
T cd04114 71 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVI-TILVGNKIDLAERREVSQQRAEEFS---DAQ---- 142 (169)
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccccCHHHHHHHH---HHc----
Confidence 988889999999999999987543322 233333333 3567 7888999998753222222222222 211
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..+++++||++|. |++++++.|.+
T Consensus 143 -~~~~~~~Sa~~~~-----------gv~~l~~~i~~ 166 (169)
T cd04114 143 -DMYYLETSAKESD-----------NVEKLFLDLAC 166 (169)
T ss_pred -CCeEEEeeCCCCC-----------CHHHHHHHHHH
Confidence 2578999999873 88999998865
No 351
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.50 E-value=2.3e-13 Score=138.13 Aligned_cols=158 Identities=17% Similarity=0.123 Sum_probs=102.5
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++++... ...+....++.+.....+..++ ..+.+|||||+++|.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 65 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR----------------FPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR 65 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC----------------CCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH
Confidence 3567889999999999999998632 1111122233333333444444 578899999999987
Q ss_pred H-HHHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 729 K-NMITGAAQMDGAILVCSAVDGPMPQTR-EHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 729 ~-~~~~~~~~aD~ailVvDa~~g~~~qt~-e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
. .+..+++++|++++|+|+++....+.. .++..+... ++| +++|+||+|+.+...... .+..++.+..
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~---~~~~~~~~~~-- 139 (170)
T cd04115 66 KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVP-RILVGNKCDLREQIQVPT---DLAQRFADAH-- 139 (170)
T ss_pred HhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCC-EEEEEECccchhhcCCCH---HHHHHHHHHc--
Confidence 4 456667899999999999986654443 334344443 467 899999999865222111 2222333332
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++++||+++.++ .++.+++..+.+.
T Consensus 140 ---~~~~~e~Sa~~~~~~--------~~i~~~f~~l~~~ 167 (170)
T cd04115 140 ---SMPLFETSAKDPSEN--------DHVEAIFMTLAHK 167 (170)
T ss_pred ---CCcEEEEeccCCcCC--------CCHHHHHHHHHHH
Confidence 257899999985322 4788888877653
No 352
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.50 E-value=1.3e-13 Score=139.30 Aligned_cols=112 Identities=22% Similarity=0.310 Sum_probs=73.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..|+|||||+++++... .. + ++.+... +.......+ ++....+++|||||+..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~--~---------~~~~t~~----~~~~~~~~~----~~~~~~~~i~D~~g~~~ 59 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FI--G---------EYDPNLE----SLYSRQVTI----DGEQVSLEILDTAGQQQ 59 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cc--c---------ccCCChH----HhceEEEEE----CCEEEEEEEEECCCCcc
Confidence 48999999999999999997311 10 0 0100000 111111111 23356799999999985
Q ss_pred -cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHh-----hcCCCEEEEEeCcCCC
Q psy5021 90 -FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQ-----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 -f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~-----~~~~p~iiviNK~D~~ 142 (1021)
+.......++.+|++|+|+|+++....+....|. .+. ..++|+++|+||+|+.
T Consensus 60 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 60 ADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred cccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 4567888999999999999999875444333332 222 3479999999999974
No 353
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.50 E-value=2.7e-13 Score=138.11 Aligned_cols=154 Identities=21% Similarity=0.156 Sum_probs=101.8
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
...+...|.+++|||||+++|+..... ...+ |+......+...+..+.+|||||+++|...
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~---------------~~~~----t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 75 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV---------------HTSP----TIGSNVEEIVYKNIRFLMWDIGGQESLRSS 75 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC---------------CcCC----ccccceEEEEECCeEEEEEECCCCHHHHHH
Confidence 356788999999999999999864311 0011 222222345556788999999999999988
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHIL-LARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~-~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..++..+|++++|+|+++... ...++.+. ++.. .++| +++++||+|+.+... .++ +.+.+........
T Consensus 76 ~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~~~-~~~----i~~~l~~~~~~~~ 149 (174)
T cd04153 76 WNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGAMT-PAE----ISESLGLTSIRDH 149 (174)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECCCCCCCCC-HHH----HHHHhCcccccCC
Confidence 8888999999999999987532 22223232 2222 2467 999999999865211 122 2222211111122
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+++++++||++| +|+++++++|.+
T Consensus 150 ~~~~~~~SA~~g-----------~gi~e~~~~l~~ 173 (174)
T cd04153 150 TWHIQGCCALTG-----------EGLPEGLDWIAS 173 (174)
T ss_pred ceEEEecccCCC-----------CCHHHHHHHHhc
Confidence 467999999987 388999998854
No 354
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.50 E-value=1.8e-13 Score=136.50 Aligned_cols=153 Identities=17% Similarity=0.200 Sum_probs=102.5
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.+...|.+++|||||+++|++...... ..+..+.+..............+.+||+||++.|.....
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 67 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN--------------YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITP 67 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc--------------cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHH
Confidence 356789999999999999987432111 112223333333333333346788999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC---CCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 733 TGAAQMDGAILVCSAVDGPM-PQTREHILLARQVG---VPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~~---ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
..++++|++++|+|+++... .....++..+.... .| +++++||+|+...... ..+++.++.... ..+
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~-----~~~ 138 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIP-IILVGNKIDLEDQRQV---STEEAQQFAKEN-----GLL 138 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccccccccc---cHHHHHHHHHHc-----CCe
Confidence 99999999999999987432 22344444555543 67 9999999999632111 123334444332 357
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhh
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLD 839 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~ 839 (1021)
++.+||+++. ++.+++++|.
T Consensus 139 ~~~~sa~~~~-----------~i~~~~~~i~ 158 (159)
T cd00154 139 FFETSAKTGE-----------NVEELFQSLA 158 (159)
T ss_pred EEEEecCCCC-----------CHHHHHHHHh
Confidence 9999999873 7888888774
No 355
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.50 E-value=1.2e-13 Score=139.03 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=102.7
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.+.++|.+++|||||+++|++... .....+.++.+.....+...+ ..+.+||+||+++|...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 65 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF----------------SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSI 65 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC----------------CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 356789999999999999997431 111112223333333444444 46789999999999988
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHH-HHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTRE-HILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e-~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
....++.+|++++|+|+++....+... ++..+.. .++| +++++||+|+....... .+...++.+..+
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~~~~---~~~~~~~~~~~~----- 136 (164)
T smart00175 66 TSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVV-IMLVGNKSDLEDQRQVS---REEAEAFAEEHG----- 136 (164)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcccccCCC---HHHHHHHHHHcC-----
Confidence 888899999999999998754433332 2333333 2567 99999999986522111 122333444443
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++|+.++ .+++++++.|.+.+
T Consensus 137 ~~~~e~Sa~~~-----------~~i~~l~~~i~~~~ 161 (164)
T smart00175 137 LPFFETSAKTN-----------TNVEEAFEELAREI 161 (164)
T ss_pred CeEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 46899999987 38889998887644
No 356
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.50 E-value=1.8e-13 Score=153.52 Aligned_cols=115 Identities=16% Similarity=0.142 Sum_probs=76.9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
....|+++|++|+|||||+|+|+... .+.. ...+.|++.....+.+.. +..+.||||||
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~-----------------~~~~tT~d~~~~~i~~~~---~~~i~l~DT~G 246 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAA-----------------DQLFATLDPTTRRLDLPD---GGEVLLTDTVG 246 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeec-----------------cCCccccCCEEEEEEeCC---CceEEEEecCc
Confidence 44679999999999999999997432 1111 112334444444555531 56899999999
Q ss_pred CC-CcH-------HHHHHHhhccCeEEEEEeCCCCCchhHH----HHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 87 HV-DFT-------IEVERSLRVLDGAVIIICASSGIQPQTE----TVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~-~f~-------~~~~~~l~~~D~~ilvvda~~g~~~~t~----~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
.. +.. ..+...+..+|++|+|+|+++....... .+++.+...++|+++|+||+|+.
T Consensus 247 ~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 247 FIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred ccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 82 211 1233457889999999999987544333 23333333478999999999985
No 357
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.50 E-value=5.2e-13 Score=137.82 Aligned_cols=113 Identities=17% Similarity=0.093 Sum_probs=77.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..|+|||||+++|+...-. . ++ ..|+...........++....+.+|||||+.+
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~--~-----------~~-------~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~ 61 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--E-----------EY-------VPTVFENYVTNIQGPNGKIIELALWDTAGQEE 61 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC--C-----------CC-------CCeeeeeeEEEEEecCCcEEEEEEEECCCchh
Confidence 6899999999999999999742210 0 00 11222222111111124467899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHH-h--hcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQS-Q--KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~-~--~~~~p~iiviNK~D~~ 142 (1021)
|......+++.+|++|+|+|.++....+.. ..|... . ..++|+++|+||.|+.
T Consensus 62 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (187)
T cd04132 62 YDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred HHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhh
Confidence 998888899999999999999875444333 234322 2 2478999999999985
No 358
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.50 E-value=1.6e-13 Score=139.40 Aligned_cols=154 Identities=15% Similarity=0.124 Sum_probs=99.6
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.++++|.+++|||||+++|++..... .. ...++.+.....+..++ ..+.+||+||+++|...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~--------------~~--~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 65 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSN--------------QY--KATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSL 65 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc--------------Cc--CCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhH
Confidence 35788999999999999998743110 01 11112222223344444 34668999999999998
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHH-H-HHHHc------CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHI-L-LARQV------GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l-~-~~~~~------~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
...+++.+|++|+|+|+++....+....| . +.... ++| +++++||+|+...... ..+++..+++..+
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~- 140 (172)
T cd01862 66 GVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLEEKRQV---STKKAQQWCQSNG- 140 (172)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCce-EEEEEECccccccccc---CHHHHHHHHHHcC-
Confidence 88999999999999999875432222222 1 12221 577 8999999999741111 1123334444444
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.++++++|+++|. |++++++.+.+.
T Consensus 141 ---~~~~~~~Sa~~~~-----------gv~~l~~~i~~~ 165 (172)
T cd01862 141 ---NIPYFETSAKEAI-----------NVEQAFETIARK 165 (172)
T ss_pred ---CceEEEEECCCCC-----------CHHHHHHHHHHH
Confidence 2579999999873 788888887653
No 359
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.50 E-value=1.5e-13 Score=154.14 Aligned_cols=146 Identities=18% Similarity=0.229 Sum_probs=100.1
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee-CCeEEEEEecCCh------
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES-ENKHYAHVDCPGH------ 724 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~-~~~~i~liDtpG~------ 724 (1021)
..++++|++|+|||||+|+|++..... +...+.|.+.....+.. ++..+.||||||+
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v----------------~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~ 253 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYA----------------ADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPH 253 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceee----------------ccCCccccCCEEEEEEeCCCceEEEEecCcccccCCH
Confidence 578899999999999999999853111 11224566666666666 4678999999997
Q ss_pred ---hhhHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 725 ---ADYIKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 725 ---~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
+.| +.+...+..||++++|+|++++...+. ..+...+... +.| +|+|+||+|+.+... .. ...
T Consensus 254 ~lie~f-~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~p-iIlV~NK~Dl~~~~~-v~-------~~~ 323 (351)
T TIGR03156 254 ELVAAF-RATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIP-QLLVYNKIDLLDEPR-IE-------RLE 323 (351)
T ss_pred HHHHHH-HHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCC-EEEEEEeecCCChHh-HH-------HHH
Confidence 233 335566889999999999987654332 2223344443 567 899999999975221 11 111
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
. + ..+++++||++|. |+++|+++|.+
T Consensus 324 ~--~----~~~~i~iSAktg~-----------GI~eL~~~I~~ 349 (351)
T TIGR03156 324 E--G----YPEAVFVSAKTGE-----------GLDLLLEAIAE 349 (351)
T ss_pred h--C----CCCEEEEEccCCC-----------CHHHHHHHHHh
Confidence 1 1 1357999999873 89999998865
No 360
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.50 E-value=2.1e-13 Score=139.80 Aligned_cols=155 Identities=19% Similarity=0.168 Sum_probs=100.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe----------eCCeEEEEEec
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE----------SENKHYAHVDC 721 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~----------~~~~~i~liDt 721 (1021)
+...++|.+++|||||++++..... ........|.+.......+. .....+.||||
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 70 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKF--------------NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDT 70 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC--------------CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeC
Confidence 4457888899999999999987431 11111122222222222222 12356789999
Q ss_pred CChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHh
Q psy5021 722 PGHADYIKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIREL 796 (1021)
Q Consensus 722 pG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~ 796 (1021)
||+++|...+..+++.+|++++|+|+++....+. ..++..+... +.| +++|.||+|+.+..... .++..++
T Consensus 71 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~v~---~~~~~~~ 146 (180)
T cd04127 71 AGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPD-IVLCGNKADLEDQRQVS---EEQAKAL 146 (180)
T ss_pred CChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccchhcCccC---HHHHHHH
Confidence 9999999999999999999999999987443222 3333334332 455 89999999987521111 1234444
Q ss_pred hhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 797 LTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+..+ ++++++||++|. |++++++.|.+
T Consensus 147 ~~~~~-----~~~~e~Sak~~~-----------~v~~l~~~l~~ 174 (180)
T cd04127 147 ADKYG-----IPYFETSAATGT-----------NVEKAVERLLD 174 (180)
T ss_pred HHHcC-----CeEEEEeCCCCC-----------CHHHHHHHHHH
Confidence 44443 478999999873 78888888765
No 361
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.50 E-value=2.1e-13 Score=143.98 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=76.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeee--eEEEeecccCceeEEEEcCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSAS--VSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~--~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+|+++|..|+|||||+++|....- . ..+ ..|+.... ..+.+. ++....+++|||||+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~--~-----------~~~-------~~T~~~d~~~~~i~~~-~~~~~~~~i~Dt~G~ 60 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF--G-----------KSY-------KQTIGLDFFSKRVTLP-GNLNVTLQVWDIGGQ 60 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC--C-----------CCC-------CCceeEEEEEEEEEeC-CCCEEEEEEEECCCc
Confidence 589999999999999999963211 0 001 11332221 222222 123578999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh------cCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK------YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~------~~~p~iiviNK~D~~ 142 (1021)
..|.......++.+|++|+|+|+++.-..+....| ..+.. .+.|+++|.||+|+.
T Consensus 61 ~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 61 SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 99999999999999999999999875433333333 33322 245789999999985
No 362
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.50 E-value=2.8e-13 Score=140.63 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=77.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|.+++|||||+++|+...-.... + -.|+........+..++....+++|||||...
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~------------~-------~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 62 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGP------------Y-------QNTIGAAFVAKRMVVGERVVTLGIWDTAGSER 62 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcC------------c-------ccceeeEEEEEEEEECCEEEEEEEEECCCchh
Confidence 6899999999999999999742211000 0 01232222221222234457789999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh--cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~--~~~p~iiviNK~D~~ 142 (1021)
|.......++.+|++|+|+|.++....+....| ..+.. .++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 63 YEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred hhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 988888888999999999999875433332333 33332 368999999999985
No 363
>KOG0092|consensus
Probab=99.50 E-value=1.3e-13 Score=133.82 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=86.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-.|+++|..++|||||+.++.. +.... ..-.||..+..+..+..++...++.+|||+|+.
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk--~~F~e------------------~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQE 65 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVK--DQFHE------------------NIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQE 65 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhh--Ccccc------------------ccccccccEEEEEEEEeCCcEEEEEEEEcCCcc
Confidence 4689999999999999999852 11111 012377777777677666667889999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCC-C---EEEEEeCcCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV-P---KMIFVNKMDRIG 143 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~-p---~iiviNK~D~~~ 143 (1021)
.|.+....++|.|++||+|+|.++--..+....|-.-.+.+. | +.+|.||+|+..
T Consensus 66 Ry~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 66 RYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred cccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 999999999999999999999998766666666644333332 3 344789999853
No 364
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.50 E-value=1.5e-13 Score=141.20 Aligned_cols=161 Identities=19% Similarity=0.235 Sum_probs=101.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEE-eeCCeEEEEEecCChhhhH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEY-ESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~-~~~~~~i~liDtpG~~~~~ 728 (1021)
+++.+..+|.+++|||||++++...... . ...+.|.+........ ...+..+.+|||||+++|.
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~------------~---~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 66 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFV------------N---TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR 66 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcC------------C---cCCccccceeEEEeeccCCCceEEEEEECCCcHhHH
Confidence 3567788999999999999999864311 0 0112233332222211 2234678999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHH----HHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMP-QTREHI----LLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l----~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..+++.+|++++|+|+++.... .....+ ......++| +++|+||+|+.+... .+ ++..++....+.
T Consensus 67 ~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~~~-~~----~~~~~~~~~~~~ 140 (183)
T cd04152 67 PLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP-VLVLANKQDLPNALS-VS----EVEKLLALHELS 140 (183)
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCccccCC-HH----HHHHHhCccccC
Confidence 8888888999999999999874321 122222 222335678 899999999864211 11 222222211111
Q ss_pred -CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 -GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 -~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
...++++++||++|. |+++++++|.+.+
T Consensus 141 ~~~~~~~~~~SA~~~~-----------gi~~l~~~l~~~l 169 (183)
T cd04152 141 ASTPWHVQPACAIIGE-----------GLQEGLEKLYEMI 169 (183)
T ss_pred CCCceEEEEeecccCC-----------CHHHHHHHHHHHH
Confidence 123578999999883 8888888877644
No 365
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.50 E-value=9.4e-14 Score=140.33 Aligned_cols=151 Identities=15% Similarity=0.056 Sum_probs=99.1
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC--CeEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE--NKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~--~~~i~liDtpG~~~~~~~~ 731 (1021)
..++|.+++|||||+++++.... ......+.|. +.....+..+ ...+.+|||||+++|....
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~~--------------~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTGEF--------------EKKYVATLGV--EVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR 66 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC--------------CCCCCCceee--EEEEEEEEECCEEEEEEEEECCCChhhcccc
Confidence 56788999999999999986321 1111222233 2333333333 3567889999999987777
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHHHH-HHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQTRE-HILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt~e-~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
...+..+|++|+|+|.+++...+... ++..+... ++| +|+|+||+|+.+.... .+...+.+.. ..+
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~~~-----~~~~~~~~~~-----~~~ 135 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRKVK-----AKQITFHRKK-----NLQ 135 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhcccccCC-----HHHHHHHHHc-----CCE
Confidence 77788999999999999865444333 33333332 577 9999999998742211 1111222221 357
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++||++| +|+++++++|.+.+
T Consensus 136 ~~e~Sa~~~-----------~~v~~~f~~l~~~~ 158 (166)
T cd00877 136 YYEISAKSN-----------YNFEKPFLWLARKL 158 (166)
T ss_pred EEEEeCCCC-----------CChHHHHHHHHHHH
Confidence 999999988 38899999987644
No 366
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.50 E-value=1.6e-13 Score=138.60 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=99.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.+.++|.+++|||||+++|++.... .......|.+.......+......+.+|||||+++|...+.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFV--------------SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRN 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--------------CCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHH
Confidence 3567889999999999999974311 11111122222222233333345678999999999998888
Q ss_pred HHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH--------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQT-REHILLARQ--------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~--------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..++.+|++|+|+|.++....+. ..++..+.. .+.| +++|+||+|+.+.... ...+...+.+..+
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 141 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDLTKHRAV---SEDEGRLWAESKG-- 141 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCce-EEEEEEchhccccccc---CHHHHHHHHHHcC--
Confidence 88899999999999987543222 233333322 2355 9999999998731110 1122223333333
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+++++||++| .|+++++++|.+.
T Consensus 142 ---~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 165 (168)
T cd04119 142 ---FKYFETSACTG-----------EGVNEMFQTLFSS 165 (168)
T ss_pred ---CeEEEEECCCC-----------CCHHHHHHHHHHH
Confidence 47899999987 3888898888653
No 367
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.50 E-value=1.9e-13 Score=140.40 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=105.3
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+.++|..++|||||+.++.... +..+... .++.+.....+..++ ..+.||||||+++|..
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~--------------~~~~~~~--t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~ 70 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGS--------------TESPYGY--NMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCT 70 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--------------CCCCCCC--cceeEEEEEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 556788889999999999998632 1111112 223333333344444 5678899999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
.+..+++.+|++|||+|.++... ...+.++..+... ++| +|||.||+|+.+.... ..++.+.+++..+
T Consensus 71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~~~v---~~~~~~~~a~~~~----- 141 (189)
T cd04121 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVP-KILVGNRLHLAFKRQV---ATEQAQAYAERNG----- 141 (189)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccchhccCC---CHHHHHHHHHHcC-----
Confidence 88888999999999999987554 3334455555432 566 9999999998642111 1234555555544
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++.+||++|. |++++++.|.+.
T Consensus 142 ~~~~e~SAk~g~-----------~V~~~F~~l~~~ 165 (189)
T cd04121 142 MTFFEVSPLCNF-----------NITESFTELARI 165 (189)
T ss_pred CEEEEecCCCCC-----------CHHHHHHHHHHH
Confidence 579999999884 788888887753
No 368
>KOG0084|consensus
Probab=99.50 E-value=3e-13 Score=131.81 Aligned_cols=119 Identities=20% Similarity=0.211 Sum_probs=91.6
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
..+.+-.|.++|..|+|||.|+.++. .|..+++....|-++....++.+ +++..++++||
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~------------------~~~f~e~~~sTIGVDf~~rt~e~--~gk~iKlQIWD 64 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFK------------------DDTFTESYISTIGVDFKIRTVEL--DGKTIKLQIWD 64 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhc------------------cCCcchhhcceeeeEEEEEEeee--cceEEEEEeee
Confidence 55677889999999999999999883 12233344444445544444444 46678999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-Hh---hcCCCEEEEEeCcCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-SQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~~---~~~~p~iiviNK~D~~ 142 (1021)
|+|+.+|...+.+++|.|+|+|+|.|.++--.......|-. +. ..++|.++|.||+|+.
T Consensus 65 TAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~ 127 (205)
T KOG0084|consen 65 TAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT 127 (205)
T ss_pred ccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH
Confidence 99999999999999999999999999998666666666643 33 2468999999999985
No 369
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.50 E-value=2.1e-13 Score=137.85 Aligned_cols=158 Identities=25% Similarity=0.178 Sum_probs=102.1
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
|+.++|..++|||||+++|.+.. . .....+.|.+ ...+...+..+.+||+||+.+|...+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~--~-------------~~~~~t~g~~----~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI--P-------------KKVAPTVGFT----PTKLRLDKYEVCIFDLGGGANFRGIWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--C-------------ccccCcccce----EEEEEECCEEEEEEECCCcHHHHHHHH
Confidence 45788999999999999998631 0 0111222332 334556778899999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHH--HHHhhhccccCCC
Q psy5021 733 TGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEME--IRELLTEYDFDGE 805 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~--~~~~l~~~~~~~~ 805 (1021)
.+++.+|++|+|+|+++... ......+..+.. .++| +++|+||+|+.+.... .++.+. +..+.+..+ .
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~~~-~~i~~~~~l~~~~~~~~---~ 136 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKP-ILVLANKQDKKNALLG-ADVIEYLSLEKLVNENK---S 136 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCCCH-HHHHHhcCcccccCCCC---c
Confidence 99999999999999987432 233444443332 3667 9999999998753211 112121 122221111 1
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhh
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLD 839 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~ 839 (1021)
.+.++++||++|.... ...|+.+-+++|.
T Consensus 137 ~~~~~~~Sa~~g~~~~-----~~~g~~~~~~wl~ 165 (167)
T cd04161 137 LCHIEPCSAIEGLGKK-----IDPSIVEGLRWLL 165 (167)
T ss_pred eEEEEEeEceeCCCCc-----cccCHHHHHHHHh
Confidence 3678999999873110 0137888888875
No 370
>PLN03108 Rab family protein; Provisional
Probab=99.50 E-value=3.2e-13 Score=141.84 Aligned_cols=118 Identities=18% Similarity=0.182 Sum_probs=80.5
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+...+|+|+|+.++|||||+++|+...-.... + + .-|.+.... .+.+. +....+++|||
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~-----------~--~---ti~~~~~~~--~i~~~--~~~i~l~l~Dt 62 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------D--L---TIGVEFGAR--MITID--NKPIKLQIWDT 62 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------C--C---CccceEEEE--EEEEC--CEEEEEEEEeC
Confidence 456789999999999999999999642211000 0 0 001111111 22222 33567899999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHh---hcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~---~~~~p~iiviNK~D~~ 142 (1021)
||+..|...+...++.+|++|+|+|+++....+....|. .+. ..++|+++++||+|+.
T Consensus 63 ~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (210)
T ss_pred CCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 999999999999999999999999998754444333332 222 2478999999999985
No 371
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.49 E-value=2e-13 Score=139.82 Aligned_cols=156 Identities=19% Similarity=0.119 Sum_probs=103.4
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+.++|..++|||||+++|...... ...++.|.+ ...++..+..+.+||+||+++|...
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~---------------~~~pt~g~~----~~~~~~~~~~~~i~D~~Gq~~~~~~ 77 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV---------------TTIPTIGFN----VETVEYKNISFTVWDVGGQDKIRPL 77 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc---------------cccCCccee----EEEEEECCEEEEEEECCCCHHHHHH
Confidence 456788999999999999999853210 011222322 2235567788999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++|+|+|+++... ...++.+..... .++| ++|++||+|+.+... . +++.+.+....+...
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~~~-~----~~~~~~l~l~~~~~~ 151 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-A----AEITDKLGLHSLRQR 151 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCCCC-H----HHHHHHhCccccCCC
Confidence 9999999999999999987432 222323322211 2566 999999999865221 1 223333322122222
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
...++++||++| +|+.+++++|.+.+
T Consensus 152 ~~~~~~~Sa~~g-----------~gv~e~~~~l~~~~ 177 (181)
T PLN00223 152 HWYIQSTCATSG-----------EGLYEGLDWLSNNI 177 (181)
T ss_pred ceEEEeccCCCC-----------CCHHHHHHHHHHHH
Confidence 345778999988 48899999887644
No 372
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.49 E-value=1.1e-13 Score=138.29 Aligned_cols=141 Identities=26% Similarity=0.284 Sum_probs=95.6
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh----hhhH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH----ADYI 728 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~----~~~~ 728 (1021)
.+.++|++++|||||+|+|.+.... . + .|. . +.+... .+|||||. .++.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~------------~-----~---~~~---~--v~~~~~--~~iDtpG~~~~~~~~~ 55 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL------------A-----R---KTQ---A--VEFNDK--GDIDTPGEYFSHPRWY 55 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc------------C-----c---cce---E--EEECCC--CcccCCccccCCHHHH
Confidence 3678999999999999999863210 0 0 111 1 112222 26999995 5677
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
..+..++..+|++++|+|++++........+.. ..+.| +++++||+|+.+.+ . .++.++++..++. .|
T Consensus 56 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~~--~----~~~~~~~~~~~~~---~p 123 (158)
T PRK15467 56 HALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKR-QIAVISKTDMPDAD--V----AATRKLLLETGFE---EP 123 (158)
T ss_pred HHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCC-eEEEEEccccCccc--H----HHHHHHHHHcCCC---CC
Confidence 777788899999999999998754433322221 23567 89999999986421 1 2344455555542 58
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++||++| +|+++|++++.+.+.
T Consensus 124 ~~~~Sa~~g-----------~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 124 IFELNSHDP-----------QSVQQLVDYLASLTK 147 (158)
T ss_pred EEEEECCCc-----------cCHHHHHHHHHHhch
Confidence 999999988 489999999987553
No 373
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.49 E-value=2e-13 Score=137.81 Aligned_cols=153 Identities=18% Similarity=0.114 Sum_probs=99.7
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.+.++|.+++|||||++++++..-. .......+.+. .....+......+.+|||||+++|.....
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~--------------~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFR--------------ESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQR 67 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--------------CCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHH
Confidence 4678899999999999999874311 00001111111 11222333345678999999999988888
Q ss_pred HHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 733 TGAAQMDGAILVCSAVDGPMP-QTREHILLARQ------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.++..+|++|+|+|.++.... ....++..+.. .++| +++|.||+|+.+..+... .+...+....
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~----- 138 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHKREVSS---NEGAACATEW----- 138 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECccccccCeecH---HHHHHHHHHh-----
Confidence 888999999999999875543 23444444444 3567 899999999865221111 1222233322
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+++++++||++|. |++++++.|.+
T Consensus 139 ~~~~~e~SA~~g~-----------~v~~~f~~l~~ 162 (165)
T cd04140 139 NCAFMETSAKTNH-----------NVQELFQELLN 162 (165)
T ss_pred CCcEEEeecCCCC-----------CHHHHHHHHHh
Confidence 2568999999883 89999998865
No 374
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.49 E-value=2e-13 Score=141.28 Aligned_cols=154 Identities=14% Similarity=0.100 Sum_probs=101.1
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC--CeEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE--NKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~--~~~i~liDtpG~~~~~~~~ 731 (1021)
+.++|.+++|||||+++++....... +....++.+.....+..+ ...+.||||||+++|....
T Consensus 3 i~vvG~~~vGKTSli~~~~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 67 (191)
T cd04112 3 VMLLGDSGVGKTCLLVRFKDGAFLNG---------------NFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVT 67 (191)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCcc---------------CcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhh
Confidence 56788999999999999987431110 011112222222223333 3567899999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..+++.+|++|+|+|+++.... ....++..+... ++| +++|+||+|+....... ..+...+.+.++ .
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~~~---~~~~~~l~~~~~-----~ 138 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVV-IMLLGNKADMSGERVVK---REDGERLAKEYG-----V 138 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccchhccccC---HHHHHHHHHHcC-----C
Confidence 8889999999999999875432 233444444443 567 99999999986421111 122333333333 4
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+++++||++| +++++++++|.+.+
T Consensus 139 ~~~e~Sa~~~-----------~~v~~l~~~l~~~~ 162 (191)
T cd04112 139 PFMETSAKTG-----------LNVELAFTAVAKEL 162 (191)
T ss_pred eEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 7999999987 38899999887655
No 375
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.49 E-value=1.1e-13 Score=124.42 Aligned_cols=82 Identities=30% Similarity=0.458 Sum_probs=74.8
Q ss_pred eEEEEEEEeecC-CCceEEEEEEEeeEEecCCEEEeCC---------CceeeEeceEEEeecCCeeccccccCCCEEEEe
Q psy5021 298 FVSLVFKIFHDP-FLGSLSFIRIYSGFIKVGDLVYNST---------KKVKEKIFRILRMFANSKKDINDAHFGDIVVIV 367 (1021)
Q Consensus 298 ~~~~V~k~~~~~-~~g~~~~~RV~sG~l~~gd~v~~~~---------~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~ 367 (1021)
++++|||+.+++ +.|+++|+|||||+|++||.|++.. ...++++.++|.++|.+..++++|.|||||++.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 478999999999 8999999999999999999998765 345688999999999999999999999999999
Q ss_pred cCCccccCCeec
Q psy5021 368 GLKESSTGDTLC 379 (1021)
Q Consensus 368 gl~~~~~gdtl~ 379 (1021)
|++++..|+|.+
T Consensus 81 g~~~~~~g~~~~ 92 (93)
T cd03700 81 GLDQLKSGTTAT 92 (93)
T ss_pred CCccCceEeEec
Confidence 999999998753
No 376
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.49 E-value=4.6e-13 Score=139.32 Aligned_cols=157 Identities=22% Similarity=0.266 Sum_probs=107.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh------
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH------ 724 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~------ 724 (1021)
...++++|.+++|||||+++|++.. +........|.|.......+ +..+.||||||+
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~--------------~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~ 86 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRK--------------NLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVS 86 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC--------------CcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCC
Confidence 4568999999999999999999742 01112233455655444332 467999999995
Q ss_pred ----hhhHHHHHHHhh---hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 725 ----ADYIKNMITGAA---QMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 725 ----~~~~~~~~~~~~---~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
++|......+++ .++++++|+|++.+......+.+.++...++| +++++||+|+.+..+ .+...+++...+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~-~iiv~nK~Dl~~~~~-~~~~~~~i~~~l 164 (196)
T PRK00454 87 KEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIP-VLIVLTKADKLKKGE-RKKQLKKVRKAL 164 (196)
T ss_pred chHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCc-EEEEEECcccCCHHH-HHHHHHHHHHHH
Confidence 344444444444 44789999999887666666666777778888 888999999976322 333344455555
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
... ..+++++||+++ .+++++++.|.+.+
T Consensus 165 ~~~-----~~~~~~~Sa~~~-----------~gi~~l~~~i~~~~ 193 (196)
T PRK00454 165 KFG-----DDEVILFSSLKK-----------QGIDELRAAIAKWL 193 (196)
T ss_pred Hhc-----CCceEEEEcCCC-----------CCHHHHHHHHHHHh
Confidence 432 257899999987 38889999887654
No 377
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.49 E-value=2.1e-13 Score=156.72 Aligned_cols=159 Identities=20% Similarity=0.225 Sum_probs=105.5
Q ss_pred ccccc-ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh
Q psy5021 647 TDLRS-NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA 725 (1021)
Q Consensus 647 ~~l~~-~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~ 725 (1021)
-+|+. ..++++|++|+|||||+|+|++....+.. ..++|+.+....++..+..++|+||||..
T Consensus 154 leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIad----------------ypfTTl~P~lGvv~~~~~~f~laDtPGli 217 (500)
T PRK12296 154 LELKSVADVGLVGFPSAGKSSLISALSAAKPKIAD----------------YPFTTLVPNLGVVQAGDTRFTVADVPGLI 217 (500)
T ss_pred EEecccceEEEEEcCCCCHHHHHHHHhcCCccccc----------------cCcccccceEEEEEECCeEEEEEECCCCc
Confidence 34554 47999999999999999999985433222 23567777777787888899999999953
Q ss_pred h-------hHHHHHHHhhhCCEEEEEEECCCC-----CcHHHH----HHHHHH----------HHcCCCeEEEEEeeccc
Q psy5021 726 D-------YIKNMITGAAQMDGAILVCSAVDG-----PMPQTR----EHILLA----------RQVGVPNIVVFLNKADC 779 (1021)
Q Consensus 726 ~-------~~~~~~~~~~~aD~ailVvDa~~g-----~~~qt~----e~l~~~----------~~~~ip~iIvviNK~Dl 779 (1021)
. .....+..+..+|++|+|||++.. +..+.. +...+. ...+.| +|||+||+|+
T Consensus 218 egas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP-~IVVlNKiDL 296 (500)
T PRK12296 218 PGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERP-RLVVLNKIDV 296 (500)
T ss_pred cccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCC-EEEEEECccc
Confidence 1 223445667889999999999742 111111 122222 123567 8889999999
Q ss_pred cchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 780 VQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 780 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+..+..+ .+...+...+ ++++++||+++ +++++|+++|.+.+
T Consensus 297 ~da~el~e----~l~~~l~~~g-----~~Vf~ISA~tg-----------eGLdEL~~~L~ell 339 (500)
T PRK12296 297 PDARELAE----FVRPELEARG-----WPVFEVSAASR-----------EGLRELSFALAELV 339 (500)
T ss_pred hhhHHHHH----HHHHHHHHcC-----CeEEEEECCCC-----------CCHHHHHHHHHHHH
Confidence 75332222 2222333333 47999999987 37888888877654
No 378
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.49 E-value=1.5e-13 Score=142.25 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=105.3
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+...++++|..++|||||+++|.+.... .... |.......+...+..+.+||+||+.++.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~---------------~~~~----T~~~~~~~i~~~~~~~~l~D~~G~~~~~ 77 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA---------------QHVP----TLHPTSEELTIGNIKFKTFDLGGHEQAR 77 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc---------------ccCC----ccCcceEEEEECCEEEEEEECCCCHHHH
Confidence 45677899999999999999999874311 0011 2222223455567889999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHH----HcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc-
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLAR----QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF- 802 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~----~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~- 802 (1021)
..+..++..+|++++|+|+++... ....+.+..+. ..+.| ++|++||+|+... ... +++.+++.....
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~~-~~~----~~~~~~~~~~~~~ 151 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVP-FLILGNKIDLPGA-VSE----EELRQALGLYGTT 151 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCC-EEEEEeCCCCCCC-cCH----HHHHHHhCccccc
Confidence 888888999999999999986432 22333333332 23577 8999999998641 112 223333322111
Q ss_pred ----------CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 803 ----------DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 803 ----------~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
....+.++++||++| +|+++++++|.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~Sa~~~-----------~gv~e~~~~l~~~ 189 (190)
T cd00879 152 TGKGVSLKVSGIRPIEVFMCSVVKR-----------QGYGEAFRWLSQY 189 (190)
T ss_pred ccccccccccCceeEEEEEeEecCC-----------CChHHHHHHHHhh
Confidence 112357899999988 3889999998763
No 379
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.49 E-value=7.8e-13 Score=134.74 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=78.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeee-EEEeecccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV-SIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~-~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.+|+++|..|+|||||+.++.+.. ... ++ -.|+..... .+.+ ++..+.+++|||||+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~--f~~-----------~~-------~pt~~~~~~~~~~~--~~~~~~l~i~Dt~G~ 59 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK--FPS-----------EY-------VPTVFDNYAVTVMI--GGEPYTLGLFDTAGQ 59 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC-----------CC-------CCceeeeeEEEEEE--CCEEEEEEEEECCCc
Confidence 469999999999999999997421 100 01 113322111 2222 344588999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHH-HHh--hcCCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWF-QSQ--KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~-~~~--~~~~p~iiviNK~D~~~ 143 (1021)
.+|...+..+++.+|++|+|+|.++....+.. ..|. ... ..++|++++.||+|+..
T Consensus 60 ~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 60 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 119 (175)
T ss_pred cchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 99988888899999999999999886544433 2343 222 23689999999999853
No 380
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.49 E-value=2.7e-13 Score=135.75 Aligned_cols=151 Identities=22% Similarity=0.159 Sum_probs=101.4
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
.++.|.+++|||||++++++.... .... |.......++.....+.+||+||++.|...+..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~~~---------------~~~~----t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 62 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVV---------------TTIP----TIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKH 62 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCC---------------CCCC----CcCcceEEEEECCEEEEEEECCCChhhHHHHHH
Confidence 467899999999999999975310 0011 122222334556788999999999999888888
Q ss_pred HhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 734 GAAQMDGAILVCSAVDGP-MPQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
.+..+|++++|+|++++. .....+++..... .+.| +++++||+|+.... ..+++ .+.+.........++
T Consensus 63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~-~~~~~----~~~~~~~~~~~~~~~ 136 (158)
T cd00878 63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVP-LLIFANKQDLPGAL-SVSEL----IEKLGLEKILGRRWH 136 (158)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEeeccCCcccc-CHHHH----HHhhChhhccCCcEE
Confidence 889999999999999753 2333444433322 3677 99999999987522 12222 222222112223578
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++||++|. |++++++.|..
T Consensus 137 ~~~~Sa~~~~-----------gv~~~~~~l~~ 157 (158)
T cd00878 137 IQPCSAVTGD-----------GLDEGLDWLLQ 157 (158)
T ss_pred EEEeeCCCCC-----------CHHHHHHHHhh
Confidence 9999999873 88888888753
No 381
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.49 E-value=1.3e-13 Score=140.32 Aligned_cols=115 Identities=22% Similarity=0.186 Sum_probs=86.6
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
++-.+|.++|..|||||||+++|.. +.... ...|+......+.+. ++.++++|.+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~--~~~~~-------------------~~pT~g~~~~~i~~~----~~~~~~~d~g 66 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN--GEISE-------------------TIPTIGFNIEEIKYK----GYSLTIWDLG 66 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS--SSEEE-------------------EEEESSEEEEEEEET----TEEEEEEEES
T ss_pred CcEEEEEEECCCccchHHHHHHhhh--ccccc-------------------cCcccccccceeeeC----cEEEEEEecc
Confidence 5667899999999999999999952 11111 112555555666776 8999999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHHHH----hhcCCCEEEEEeCcCCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQS----QKYKVPKMIFVNKMDRIGAN 145 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~~~----~~~~~p~iiviNK~D~~~~~ 145 (1021)
|+..|...+..++..+|++|+|||+++.- ..+....+..+ ...++|+++++||.|++++.
T Consensus 67 G~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~ 131 (175)
T PF00025_consen 67 GQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM 131 (175)
T ss_dssp SSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS
T ss_pred ccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc
Confidence 99999999999999999999999999642 23333333333 23479999999999998653
No 382
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.49 E-value=3e-13 Score=135.03 Aligned_cols=152 Identities=16% Similarity=0.126 Sum_probs=100.3
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
++++|.+++|||||+++|.+..... +....+.. ....+...+..+.+||+||+.+|...+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~----------------~~~~t~~~--~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE----------------DTIPTVGF--NMRKVTKGNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc----------------CccCCCCc--ceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 4688999999999999999753110 01111112 22234455678899999999999999999
Q ss_pred HhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 734 GAAQMDGAILVCSAVDGP-MPQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
++..+|++++|+|+++.. ..+..+++..+.. .++| +++++||+|+.+... .+.+.. .+.........++
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~-~~~~~~----~~~~~~~~~~~~~ 137 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGALS-VDELIE----QMNLKSITDREVS 137 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCcC-HHHHHH----HhCcccccCCceE
Confidence 999999999999998632 2333444443322 4677 889999999875321 111111 1111111123468
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++|++++. ++++++++|.+
T Consensus 138 ~~~~Sa~~~~-----------gi~~l~~~l~~ 158 (159)
T cd04159 138 CYSISCKEKT-----------NIDIVLDWLIK 158 (159)
T ss_pred EEEEEeccCC-----------ChHHHHHHHhh
Confidence 8999999874 88899988854
No 383
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.49 E-value=1.2e-13 Score=160.60 Aligned_cols=147 Identities=20% Similarity=0.179 Sum_probs=108.4
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH---
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI--- 728 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~--- 728 (1021)
+.++++|.+|+|||||+|+|++..... .....|.|.+.....+..++..+.+|||||+.++.
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~---------------v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~i 280 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAI---------------VTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEV 280 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcc---------------cCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHH
Confidence 578999999999999999999743211 12345778888888888888999999999987542
Q ss_pred -----HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 -----KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 -----~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..++..+|++++|+|++++...+..+.+.. ..+.| +++|+||+|+.+.... . ..
T Consensus 281 e~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~p-iiiV~NK~DL~~~~~~-~----------~~---- 342 (449)
T PRK05291 281 EKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKP-VIVVLNKADLTGEIDL-E----------EE---- 342 (449)
T ss_pred HHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCC-cEEEEEhhhccccchh-h----------hc----
Confidence 234556789999999999998766555444443 34667 8999999999752211 0 11
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
...+++++||++| +|++.|+++|.+.+.
T Consensus 343 -~~~~~i~iSAktg-----------~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 343 -NGKPVIRISAKTG-----------EGIDELREAIKELAF 370 (449)
T ss_pred -cCCceEEEEeeCC-----------CCHHHHHHHHHHHHh
Confidence 1246899999987 388999999987553
No 384
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.49 E-value=3.1e-13 Score=138.95 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=102.6
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.....++|.+++|||||+++|.+..... .....+.+ ...+...+..+.+|||||+.++...
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~---------------~~~t~~~~----~~~~~~~~~~~~~~D~~G~~~~~~~ 77 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ---------------HQPTQHPT----SEELAIGNIKFTTFDLGGHQQARRL 77 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc---------------cCCccccc----eEEEEECCEEEEEEECCCCHHHHHH
Confidence 4667889999999999999998742110 01112222 2334456788999999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHH----HcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc----
Q psy5021 731 MITGAAQMDGAILVCSAVDGP-MPQTREHILLAR----QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD---- 801 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~----~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~---- 801 (1021)
+..++..+|++++|+|+++.. .....+.+..+. ..++| +++++||+|+.... ..+++.+.+. +.....
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~-~~~~i~~~l~-l~~~~~~~~~ 154 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP-FLILGNKIDAPYAA-SEDELRYALG-LTNTTGSKGK 154 (184)
T ss_pred HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCC-CHHHHHHHcC-CCcccccccc
Confidence 899999999999999998743 223333343322 24677 99999999986411 1122222221 000000
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.......++++||+++ +|+++++++|.+
T Consensus 155 ~~~~~~~i~~~Sa~~~-----------~g~~~~~~wl~~ 182 (184)
T smart00178 155 VGVRPLEVFMCSVVRR-----------MGYGEGFKWLSQ 182 (184)
T ss_pred cCCceeEEEEeecccC-----------CChHHHHHHHHh
Confidence 0112457999999987 488999998865
No 385
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.49 E-value=2.3e-13 Score=137.18 Aligned_cols=152 Identities=14% Similarity=0.108 Sum_probs=99.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.+.++|.+++|||||+++++..... . ....+.+.+. ...+..++ ..+.+|||||+++|...
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~~~~------------~--~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQGIFV------------E--KYDPTIEDSY---RKQVEVDGQQCMLEILDTAGTEQFTAM 65 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC------------c--ccCCcchheE---EEEEEECCEEEEEEEEECCCcccchhH
Confidence 4678899999999999999853210 0 0111111111 22344443 45678999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++++|+|.++....+ ..+++..+.. .++| +++++||+|+.+..... ..+...+.+.++
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 137 (164)
T cd04175 66 RDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVVG---KEQGQNLARQWG---- 137 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcchhccEEc---HHHHHHHHHHhC----
Confidence 999999999999999987644322 2333333332 3577 99999999997522111 112233333333
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+++++||++|. |++++++++.+.
T Consensus 138 -~~~~~~Sa~~~~-----------~v~~~~~~l~~~ 161 (164)
T cd04175 138 -CAFLETSAKAKI-----------NVNEIFYDLVRQ 161 (164)
T ss_pred -CEEEEeeCCCCC-----------CHHHHHHHHHHH
Confidence 479999999873 888999888653
No 386
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.49 E-value=6.3e-13 Score=134.99 Aligned_cols=113 Identities=19% Similarity=0.074 Sum_probs=80.2
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+++|+.++|||||+.+++.. .... + .-.|+.... ...+..++..+.+++|||+|+.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~--~f~~-----------~-------~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~ 60 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSN--KFPT-----------D-------YIPTVFDNF-SANVSVDGNTVNLGLWDTAGQE 60 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcC--CCCC-----------C-------CCCcceeee-EEEEEECCEEEEEEEEECCCCc
Confidence 46999999999999999999631 1110 0 112332221 1122224457889999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHH-HHHh--hcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVW-FQSQ--KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~-~~~~--~~~~p~iiviNK~D~~ 142 (1021)
+|......+++.+|++|+|+|.++.-..+.. ..| +.+. ..++|+++|.||+|+.
T Consensus 61 ~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (176)
T cd04133 61 DYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLR 118 (176)
T ss_pred cccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhc
Confidence 9999999999999999999999876554443 334 3333 2479999999999985
No 387
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.48 E-value=3.4e-13 Score=134.55 Aligned_cols=145 Identities=23% Similarity=0.212 Sum_probs=101.8
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH----
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI---- 728 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~---- 728 (1021)
..+.+|.+++|||||+++|++..... .....++|.+.....+...+..+.+|||||+.++.
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~ 67 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAI---------------VSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIE 67 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEe---------------ccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHH
Confidence 56889999999999999999743111 11234667776666777778899999999986653
Q ss_pred ----HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 ----KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ----~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+...+..+|++++|+|+++.........+.. ..+.| +++++||+|+.+.... . ...
T Consensus 68 ~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~-vi~v~nK~D~~~~~~~----------~-----~~~ 129 (157)
T cd04164 68 KIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKP-IIVVLNKSDLLPDSEL----------L-----SLL 129 (157)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCC-EEEEEEchhcCCcccc----------c-----ccc
Confidence 234456789999999999997554444333332 45667 9999999999763211 1 111
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
...+++++||+++ .++++|+++|.+.
T Consensus 130 ~~~~~~~~Sa~~~-----------~~v~~l~~~l~~~ 155 (157)
T cd04164 130 AGKPIIAISAKTG-----------EGLDELKEALLEL 155 (157)
T ss_pred CCCceEEEECCCC-----------CCHHHHHHHHHHh
Confidence 1357899999977 3888999888653
No 388
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.48 E-value=1.8e-13 Score=141.71 Aligned_cols=150 Identities=16% Similarity=0.048 Sum_probs=99.3
Q ss_pred eeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHHHhh
Q psy5021 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAA 736 (1021)
Q Consensus 657 ~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~ 736 (1021)
+|..++|||||+.+++... +......+.|.+.......++.....+.||||||+++|...+..+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~--------------f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE--------------FEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC--------------CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhc
Confidence 4678999999999998632 11111122233333333333333457789999999999999999999
Q ss_pred hCCEEEEEEECCCCCcHH-HHHHHHHHHH--cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEEec
Q psy5021 737 QMDGAILVCSAVDGPMPQ-TREHILLARQ--VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGS 813 (1021)
Q Consensus 737 ~aD~ailVvDa~~g~~~q-t~e~l~~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iS 813 (1021)
.+|++|+|+|+++..+.+ ...++..+.. .++| +|+|+||+|+....... +.+ .+.+.. .++++++|
T Consensus 67 ~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~~----~~~-~~~~~~-----~~~~~e~S 135 (200)
T smart00176 67 QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDVKDRKVKA----KSI-TFHRKK-----NLQYYDIS 135 (200)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccCCH----HHH-HHHHHc-----CCEEEEEe
Confidence 999999999999865433 3344444444 3677 99999999985421111 111 222222 36799999
Q ss_pred ccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 814 ALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 814 a~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
|++|. |+.+++++|...+
T Consensus 136 Ak~~~-----------~v~~~F~~l~~~i 153 (200)
T smart00176 136 AKSNY-----------NFEKPFLWLARKL 153 (200)
T ss_pred CCCCC-----------CHHHHHHHHHHHH
Confidence 99883 8888888887644
No 389
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.48 E-value=3e-14 Score=123.58 Aligned_cols=70 Identities=29% Similarity=0.451 Sum_probs=65.4
Q ss_pred eeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCe--EEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENF--KIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 593 EP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~--~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
||||.|||++|++++|+|+++|++|||+|++++..++. +.|+|++|++++++|.++||++|+|.+.+...
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~ 72 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSV 72 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEE
Confidence 89999999999999999999999999999998877655 89999999999999999999999999887653
No 390
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.48 E-value=3.5e-13 Score=135.03 Aligned_cols=113 Identities=17% Similarity=0.191 Sum_probs=76.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+|+|+.|+|||||+++|+.... .. .+.+. +-......+.+ ++..+.+++||+||+.+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~--~~-----------~~~~~------~~~~~~~~~~~--~~~~~~~~l~D~~g~~~ 59 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VE-----------EYDPT------IEDSYRKTIVV--DGETYTLDILDTAGQEE 59 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--Cc-----------CcCCC------hhHeEEEEEEE--CCEEEEEEEEECCChHH
Confidence 589999999999999999974321 00 00000 00111111222 22357899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCch-hHHHHHHHHh----hcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQP-QTETVWFQSQ----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~-~t~~~~~~~~----~~~~p~iiviNK~D~~~ 143 (1021)
+.......++.+|++++|+|.++.... .....|.... ..++|+++++||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 60 FSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 999999999999999999999874322 2233333332 24799999999999853
No 391
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.48 E-value=2.7e-13 Score=137.47 Aligned_cols=155 Identities=17% Similarity=0.113 Sum_probs=100.2
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~ 731 (1021)
+.++|..++|||||++++....-. .....+.| .+.....+..++ ..+.||||||+++|...+
T Consensus 3 i~ivG~~~vGKTsli~~~~~~~f~--------------~~~~~t~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (170)
T cd04108 3 VIVVGDLSVGKTCLINRFCKDVFD--------------KNYKATIG--VDFEMERFEILGVPFSLQLWDTAGQERFKCIA 66 (170)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCcee--eEEEEEEEEECCEEEEEEEEeCCChHHHHhhH
Confidence 457889999999999999974310 01111222 233223333333 568899999999999998
Q ss_pred HHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC---CCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPM-PQTREHILLARQVG---VPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~~---ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..+++.+|++++|+|+++... ....+++....... .+++|+|.||+|+.+... ......+...+.+.++ .
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~-~~~~~~~~~~~~~~~~-----~ 140 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ-YALMEQDAIKLAAEMQ-----A 140 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccc-ccccHHHHHHHHHHcC-----C
Confidence 899999999999999987432 22334444433322 233889999999865211 1112233334444333 4
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++||++|. +++++++.|.+.
T Consensus 141 ~~~e~Sa~~g~-----------~v~~lf~~l~~~ 163 (170)
T cd04108 141 EYWSVSALSGE-----------NVREFFFRVAAL 163 (170)
T ss_pred eEEEEECCCCC-----------CHHHHHHHHHHH
Confidence 68999999873 888888888664
No 392
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.48 E-value=3.3e-13 Score=137.59 Aligned_cols=155 Identities=21% Similarity=0.123 Sum_probs=103.3
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+..+|..++|||||+++|...... . ..++.|.. . ..+...+..+.+|||||+.+|...
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~------------~---~~~t~~~~--~--~~~~~~~~~l~l~D~~G~~~~~~~ 73 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV------------T---TIPTIGFN--V--ETVTYKNISFTVWDVGGQDKIRPL 73 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC------------C---cCCccccc--e--EEEEECCEEEEEEECCCChhhHHH
Confidence 467888999999999999999753210 0 11122222 2 234456778999999999999998
Q ss_pred HHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGP-MPQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.||++|+|+|+++.. .....+++..+.. .++| ++||+||+|+.+... .+ ++.+.+........
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~~~ 147 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV-ILVFANKQDLPDAMK-AA----EITEKLGLHSIRDR 147 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccCCC-HH----HHHHHhCccccCCC
Confidence 899999999999999998643 2344555544322 2466 999999999865211 11 22222221111223
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+.++++||++|. |+.+++++|.+.
T Consensus 148 ~~~~~~~Sa~~g~-----------gv~e~~~~l~~~ 172 (175)
T smart00177 148 NWYIQPTCATSGD-----------GLYEGLTWLSNN 172 (175)
T ss_pred cEEEEEeeCCCCC-----------CHHHHHHHHHHH
Confidence 4567899999883 889999988654
No 393
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.48 E-value=8.1e-13 Score=133.06 Aligned_cols=158 Identities=23% Similarity=0.251 Sum_probs=104.8
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh---
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD--- 726 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~--- 726 (1021)
++..++++|.+++|||||+|+|++........ ....+.......+...+..+.+|||||+..
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 66 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP---------------KPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKK 66 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccC---------------CCCceeceEEEEEEcCCeEEEEEECCCCCcchH
Confidence 45678999999999999999998753221111 111222233333444567899999999653
Q ss_pred -----hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 727 -----YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 727 -----~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
+.......+..+|++++|+|+++.........+..+...+.| +++++||+|+....+..... +..+....+
T Consensus 67 ~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~~~---~~~~~~~~~ 142 (168)
T cd04163 67 KLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTP-VILVLNKIDLVKDKEDLLPL---LEKLKELGP 142 (168)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCC-EEEEEEchhccccHHHHHHH---HHHHHhccC
Confidence 233445667899999999999987555555566666667788 88999999987422222222 222222222
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
..+++++|++++ .+++++++.|.+.
T Consensus 143 ----~~~~~~~s~~~~-----------~~~~~l~~~l~~~ 167 (168)
T cd04163 143 ----FAEIFPISALKG-----------ENVDELLEEIVKY 167 (168)
T ss_pred ----CCceEEEEeccC-----------CChHHHHHHHHhh
Confidence 246899999977 3788888888653
No 394
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.48 E-value=6.7e-13 Score=135.22 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=76.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.++|||||++++....- .. . + -.|+.... ......++..+.+++|||||+.+
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~--~~------~-----~-------~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~ 60 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF--PE------E-----Y-------VPTVFDHY-AVSVTVGGKQYLLGLYDTAGQED 60 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC------C-----C-------CCceeeee-EEEEEECCEEEEEEEEeCCCccc
Confidence 689999999999999999964221 10 0 0 01111111 11112223367789999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHH-HHHh--hcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTE-TVW-FQSQ--KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~-~~~~--~~~~p~iiviNK~D~~~ 143 (1021)
|.......++.+|++|+|+|.++.-..+.. ..| ..+. ..++|+++++||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 61 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRD 118 (174)
T ss_pred ccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhc
Confidence 988888889999999999999876443322 223 2222 45799999999999854
No 395
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.48 E-value=2.2e-13 Score=151.00 Aligned_cols=151 Identities=22% Similarity=0.177 Sum_probs=115.0
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh---h-
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD---Y- 727 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~---~- 727 (1021)
+...++|.||+|||||+|+|++....+... ..|+|.|.....+..++..+.++||+|.+. .
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTd---------------I~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~V 282 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTD---------------IAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVV 282 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecC---------------CCCCccceEEEEEEECCEEEEEEecCCcccCccHH
Confidence 567788999999999999999976555443 459999999999999999999999999653 2
Q ss_pred ----HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 728 ----IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 728 ----~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
+......+.+||.+++|+|++++...+....+. +...+.| +++|+||+|+..... . ..+ + +
T Consensus 283 E~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~-~i~v~NK~DL~~~~~-~----~~~-~----~--- 347 (454)
T COG0486 283 ERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKP-IIVVLNKADLVSKIE-L----ESE-K----L--- 347 (454)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCC-EEEEEechhcccccc-c----chh-h----c---
Confidence 455666788999999999999876666666666 4445667 899999999987321 0 111 0 1
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
....+++.+|++++ +|++.|.++|.+.+.
T Consensus 348 ~~~~~~i~iSa~t~-----------~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 348 ANGDAIISISAKTG-----------EGLDALREAIKQLFG 376 (454)
T ss_pred cCCCceEEEEecCc-----------cCHHHHHHHHHHHHh
Confidence 11236899999987 388888888877553
No 396
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.48 E-value=3e-13 Score=140.95 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=103.0
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+.++|..++|||||+++|.+... ........|. +.....+..++ ..+.||||||+++|..
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~--------------~~~~~~t~~~--~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 70 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTF--------------SGSYITTIGV--DFKIRTVEINGERVKLQIWDTAGQERFRT 70 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--------------CCCcCccccc--eeEEEEEEECCEEEEEEEEeCCCchhHHH
Confidence 5677888999999999999986431 0111122232 33333344443 4678999999999998
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
.+..+++.+|++++|+|+++....+ ...++..+... ..| ++||+||+|+.+..... ..+...+.+..+
T Consensus 71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~~~~~---~~~~~~~~~~~~----- 141 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVC-KVLVGNKNDDPERKVVE---TEDAYKFAGQMG----- 141 (199)
T ss_pred HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccccC---HHHHHHHHHHcC-----
Confidence 8888999999999999998754333 23344433332 356 88999999987522111 123334444333
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++|. |+.+++++|.+.+
T Consensus 142 ~~~~e~Sa~~~~-----------gi~~lf~~l~~~~ 166 (199)
T cd04110 142 ISLFETSAKENI-----------NVEEMFNCITELV 166 (199)
T ss_pred CEEEEEECCCCc-----------CHHHHHHHHHHHH
Confidence 578999999874 7888888876643
No 397
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.47 E-value=6.8e-13 Score=151.09 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=78.2
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.-+..|+++|.+|||||||+++|......+.. ..+.|+.+....+.+.. +..+.++|||
T Consensus 156 k~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~------------------ypfTTl~PnlG~v~~~~---~~~~~laD~P 214 (424)
T PRK12297 156 KLLADVGLVGFPNVGKSTLLSVVSNAKPKIAN------------------YHFTTLVPNLGVVETDD---GRSFVMADIP 214 (424)
T ss_pred cccCcEEEEcCCCCCHHHHHHHHHcCCCcccc------------------CCcceeceEEEEEEEeC---CceEEEEECC
Confidence 34568999999999999999999743322211 12346666555555542 4689999999
Q ss_pred CCCC-------cHHHHHHHhhccCeEEEEEeCCCC--Cc--hhHHHHHHHHhh-----cCCCEEEEEeCcCCC
Q psy5021 86 GHVD-------FTIEVERSLRVLDGAVIIICASSG--IQ--PQTETVWFQSQK-----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~-------f~~~~~~~l~~~D~~ilvvda~~g--~~--~~t~~~~~~~~~-----~~~p~iiviNK~D~~ 142 (1021)
|..+ +.....+.+..+|++|+|+|+++. .. .....+.+.+.. .++|.++|+||+|+.
T Consensus 215 Gliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 215 GLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred CCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 9854 234455666779999999999753 11 222233333332 478999999999974
No 398
>PTZ00369 Ras-like protein; Provisional
Probab=99.47 E-value=2.8e-13 Score=139.99 Aligned_cols=157 Identities=16% Similarity=0.114 Sum_probs=101.0
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+...++|.+++|||||++++.+..... ....+.|.+. .....++.....+.+|||||+++|...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~--------------~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFID--------------EYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAM 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCc--------------CcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhh
Confidence 3567788999999999999999743110 0111112222 112223333345778999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++++|+|+++... ....+++..+... ++| +++++||+|+.+.... . ..+...+.+.++
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~i-~--~~~~~~~~~~~~---- 141 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVP-MILVGNKCDLDSERQV-S--TGEGQELAKSFG---- 141 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccc-C--HHHHHHHHHHhC----
Confidence 9899999999999999987543 2233333333322 567 9999999998642111 1 112223333333
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++|. |+++++++|.+.+
T Consensus 142 -~~~~e~Sak~~~-----------gi~~~~~~l~~~l 166 (189)
T PTZ00369 142 -IPFLETSAKQRV-----------NVDEAFYELVREI 166 (189)
T ss_pred -CEEEEeeCCCCC-----------CHHHHHHHHHHHH
Confidence 478999999873 7888888876544
No 399
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.47 E-value=8.4e-13 Score=136.57 Aligned_cols=114 Identities=18% Similarity=0.069 Sum_probs=80.5
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-+|+++|..++|||||+.++.... ... +.-.|+.... ...+..++..+.+++|||||+.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~--f~~------------------~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e 62 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNA--FPK------------------EYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQE 62 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--CCc------------------CCCCceEeee-EEEEEECCEEEEEEEEECCCch
Confidence 479999999999999999996421 100 0112333221 1112223446889999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HHHH-Hh--hcCCCEEEEEeCcCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTET-VWFQ-SQ--KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~~~-~~--~~~~p~iiviNK~D~~~ 143 (1021)
.|...+..+++.+|++|+|+|.++....+... .|.. +. ..++|+++|.||.|+..
T Consensus 63 ~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 63 EYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred hhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 99998888999999999999998865444443 3532 22 24799999999999853
No 400
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.47 E-value=1.6e-12 Score=137.53 Aligned_cols=182 Identities=19% Similarity=0.226 Sum_probs=124.8
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
...++++|++++|||||++.|.+... ........|. +. .+...+..++|+||||+. ..
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~--------------~~~~~~~~g~-i~----i~~~~~~~i~~vDtPg~~---~~ 96 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYT--------------KQNISDIKGP-IT----VVTGKKRRLTFIECPNDI---NA 96 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcc--------------cCcccccccc-EE----EEecCCceEEEEeCCchH---HH
Confidence 45678999999999999999986421 1111122332 11 122357889999999964 56
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhh-ccccCCCceEE
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLT-EYDFDGENTKI 809 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~i 809 (1021)
++..+..+|++++|+|++.+...++.+.+..+...|+|.+|+|+||+|+.+.....+.+.+++++.+. .+ + ...++
T Consensus 97 ~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~-~--~~~ki 173 (225)
T cd01882 97 MIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEV-Y--QGAKL 173 (225)
T ss_pred HHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhh-C--CCCcE
Confidence 67778999999999999999988999999999889999667799999998544445555566655332 21 1 13589
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEee
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSI 863 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v 863 (1021)
+++||++... ..+.....++..|...-+...++.+....|.++.++.+
T Consensus 174 ~~iSa~~~~~------~~~~e~~~~~r~i~~~~~~~~~~r~~r~y~~~~~~~~~ 221 (225)
T cd01882 174 FYLSGIVHGR------YPKTEIHNLARFISVMKFRPLNWRNSHPYVLADRMEDI 221 (225)
T ss_pred EEEeeccCCC------CCHHHHHHHHHHHHhCCCCCCeeecCCCeEEEeeeecc
Confidence 9999997531 22334556777776544445555666666777776654
No 401
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.47 E-value=4.8e-13 Score=136.42 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=70.6
Q ss_pred EEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC---
Q psy5021 13 IIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD--- 89 (1021)
Q Consensus 13 iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~--- 89 (1021)
++|+.|+|||||+++|......+. ...+.|+......+.+.. ++.+++|||||+.+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~------------------~~~~~t~~~~~~~~~~~~---~~~~~i~DtpG~~~~~~ 59 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVA------------------NYPFTTLEPNLGVVEVPD---GARIQVADIPGLIEGAS 59 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcccc------------------CCCceeecCcceEEEcCC---CCeEEEEeccccchhhh
Confidence 589999999999999964321000 112334444433333331 56789999999843
Q ss_pred ----cHHHHHHHhhccCeEEEEEeCCCCC------chhHHH-HHHHHh----------hcCCCEEEEEeCcCCCC
Q psy5021 90 ----FTIEVERSLRVLDGAVIIICASSGI------QPQTET-VWFQSQ----------KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 ----f~~~~~~~l~~~D~~ilvvda~~g~------~~~t~~-~~~~~~----------~~~~p~iiviNK~D~~~ 143 (1021)
+.......++.+|++++|+|+.+.. ...... .+..+. ..++|+++++||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 60 EGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred cCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 2334566788899999999998762 121212 222222 14799999999999863
No 402
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.47 E-value=3.1e-13 Score=141.57 Aligned_cols=148 Identities=22% Similarity=0.266 Sum_probs=97.0
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe-EEEEEecCChhh----
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK-HYAHVDCPGHAD---- 726 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~-~i~liDtpG~~~---- 726 (1021)
..++++|++|+|||||+++|++......+ ..+.|++.....+...+. .+.||||||+.+
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 105 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAED----------------QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPH 105 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCC----------------ccceeccceeEEEEecCCceEEEeCCCccccCCCH
Confidence 57899999999999999999985311111 112344444444555444 899999999732
Q ss_pred -----hHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 727 -----YIKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 727 -----~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
|. .+...+..+|++++|+|++++..... ..+...+... ++| +++|+||+|+.+.... . ..+
T Consensus 106 ~~~~~~~-~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~-viiV~NK~Dl~~~~~~-~-------~~~ 175 (204)
T cd01878 106 QLVEAFR-STLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIP-MILVLNKIDLLDDEEL-E-------ERL 175 (204)
T ss_pred HHHHHHH-HHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCC-EEEEEEccccCChHHH-H-------HHh
Confidence 22 23344678999999999998654433 3333444333 466 8999999999763211 1 111
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.. ...+++++||+++. |+++++++|.+.
T Consensus 176 ~~-----~~~~~~~~Sa~~~~-----------gi~~l~~~L~~~ 203 (204)
T cd01878 176 EA-----GRPDAVFISAKTGE-----------GLDELLEAIEEL 203 (204)
T ss_pred hc-----CCCceEEEEcCCCC-----------CHHHHHHHHHhh
Confidence 11 13578999999873 888898888653
No 403
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.47 E-value=5.7e-13 Score=136.54 Aligned_cols=112 Identities=14% Similarity=0.160 Sum_probs=75.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..++|||||+.+++...- .. ++ -.|+...........++....+++|||+|+..
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f--~~-----------~~-------~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~ 61 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF--DE-----------DY-------IQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC-----------CC-------CCccceEEEEEEEEECCEEEEEEEEeCCCchh
Confidence 589999999999999999964211 00 01 11322222111122234467899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
|...+..+++.+|++++|+|.++....+....| ..+.. ...| ++|+||+|+.
T Consensus 62 ~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 62 FINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred HHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 999899999999999999999876444333333 33332 2455 6789999985
No 404
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.47 E-value=3e-13 Score=136.34 Aligned_cols=153 Identities=18% Similarity=0.124 Sum_probs=98.2
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.+.++|.+++|||||+++|++....... +.. +.+.....+..++ ..+.+|||||+++|...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~--------------~~t---~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 64 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDY--------------DPT---IEDSYRKQIEIDGEVCLLDILDTAGQEEFSAM 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccc--------------CCc---hhhhEEEEEEECCEEEEEEEEECCCcccchHH
Confidence 3567899999999999999874311100 000 0011112222333 46778999999999988
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++++|+|+++....+. ..+...+.. .++| +++|+||+|+.+..... ..+...+.+..+
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 136 (164)
T smart00173 65 RDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVP-IVLVGNKCDLESERVVS---TEEGKELARQWG---- 136 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceEc---HHHHHHHHHHcC----
Confidence 8888999999999999987443222 222222222 2567 89999999987522111 122333333332
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++|. |+++++++|.+.+
T Consensus 137 -~~~~~~Sa~~~~-----------~i~~l~~~l~~~~ 161 (164)
T smart00173 137 -CPFLETSAKERV-----------NVDEAFYDLVREI 161 (164)
T ss_pred -CEEEEeecCCCC-----------CHHHHHHHHHHHH
Confidence 579999999873 8889998887543
No 405
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.47 E-value=6.9e-13 Score=133.30 Aligned_cols=113 Identities=24% Similarity=0.190 Sum_probs=76.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..++|||||+.+++.. .... ....|+........+..++....+.+|||||..+
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~--~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 61 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDN--EFHS------------------SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcC--CCCC------------------CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHh
Confidence 6899999999999999999631 1111 0111332222111222233457889999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
|......+++.+|++++|+|.++.-..+...-| .... ..++|++++.||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 62 YQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred HHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999899999999999999999875333333333 2221 2368999999999985
No 406
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.47 E-value=1.3e-13 Score=135.32 Aligned_cols=135 Identities=27% Similarity=0.239 Sum_probs=89.6
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh----hhHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA----DYIK 729 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~----~~~~ 729 (1021)
+.++|.+++|||||+++|++.... . ..|+ ..++.. .+|||||+. .+.+
T Consensus 3 v~liG~~~vGKSsL~~~l~~~~~~----------------~----~~t~-----~~~~~~---~~iDt~G~~~~~~~~~~ 54 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGEEIL----------------Y----KKTQ-----AVEYND---GAIDTPGEYVENRRLYS 54 (142)
T ss_pred EEEECCCCCCHHHHHHHHcCCccc----------------c----ccce-----eEEEcC---eeecCchhhhhhHHHHH
Confidence 568899999999999999974310 0 0111 122222 689999973 4455
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEE
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 809 (1021)
.+...++.+|++++|+|++++...+..+++.. .+.| +|+|+||+|+.+..... ++..++++..++ .++
T Consensus 55 ~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p-~ilv~NK~Dl~~~~~~~----~~~~~~~~~~~~----~~~ 122 (142)
T TIGR02528 55 ALIVTAADADVIALVQSATDPESRFPPGFASI---FVKP-VIGLVTKIDLAEADVDI----ERAKELLETAGA----EPI 122 (142)
T ss_pred HHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCC-eEEEEEeeccCCcccCH----HHHHHHHHHcCC----CcE
Confidence 55556889999999999998776555443332 3456 88899999986522111 233344444432 368
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhh
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLD 839 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~ 839 (1021)
+++||++| .++++++++|.
T Consensus 123 ~~~Sa~~~-----------~gi~~l~~~l~ 141 (142)
T TIGR02528 123 FEISSVDE-----------QGLEALVDYLN 141 (142)
T ss_pred EEEecCCC-----------CCHHHHHHHHh
Confidence 99999987 38888988774
No 407
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.47 E-value=3.2e-13 Score=137.69 Aligned_cols=149 Identities=21% Similarity=0.219 Sum_probs=95.6
Q ss_pred eeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-CeEEEEEecCChhh-------h
Q psy5021 656 TIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-NKHYAHVDCPGHAD-------Y 727 (1021)
Q Consensus 656 ~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-~~~i~liDtpG~~~-------~ 727 (1021)
++|.+++|||||+++|++.... .....+.|.+.....+..+ +..+.||||||+.+ .
T Consensus 1 iiG~~~~GKStll~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK----------------VANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc----------------ccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCc
Confidence 3688999999999999985321 1112344555555556666 88999999999743 2
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCC------c-HHHHHHHHHHHH----------cCCCeEEEEEeeccccchhhHHHHHH
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGP------M-PQTREHILLARQ----------VGVPNIVVFLNKADCVQDKELLDLVE 790 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~------~-~qt~e~l~~~~~----------~~ip~iIvviNK~Dl~~~~~~~~~~~ 790 (1021)
...+..++..+|++++|+|+++.. . .+...+...+.. .+.| +++|+||+|+........ ..
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~-~~ 142 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP-VIYVLNKIDLDDAEELEE-EL 142 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC-eEEEEEchhcCchhHHHH-HH
Confidence 334556678899999999998762 1 222223322221 3677 899999999976322111 11
Q ss_pred HHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 791 MEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 791 ~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
....... ...+++++||+++ ++++++++.+..
T Consensus 143 --~~~~~~~-----~~~~~~~~Sa~~~-----------~gl~~l~~~l~~ 174 (176)
T cd01881 143 --VRELALE-----EGAEVVPISAKTE-----------EGLDELIRAIYE 174 (176)
T ss_pred --HHHHhcC-----CCCCEEEEehhhh-----------cCHHHHHHHHHh
Confidence 1111111 1356899999987 388889888754
No 408
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.47 E-value=3e-13 Score=142.78 Aligned_cols=158 Identities=15% Similarity=0.035 Sum_probs=105.7
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
...+.+.++|..++|||||+++++... +......+.|.+..............+.+|||||+++|.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~--------------f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 76 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE--------------FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCC--------------CCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhh
Confidence 556788899999999999999988643 111223333444433333233334578899999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ--VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
..+..+++.+|++|+|+|.++....+. ..++..+.. .++| +++|+||+|+.+..... +++ .+.+..
T Consensus 77 ~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~~----~~~-~~~~~~----- 145 (219)
T PLN03071 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA----KQV-TFHRKK----- 145 (219)
T ss_pred hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhhhhccCCH----HHH-HHHHhc-----
Confidence 888888899999999999998554333 233333332 3577 99999999986421111 122 222222
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.++++++||++|. |+++++++|.+.+
T Consensus 146 ~~~~~e~SAk~~~-----------~i~~~f~~l~~~~ 171 (219)
T PLN03071 146 NLQYYEISAKSNY-----------NFEKPFLYLARKL 171 (219)
T ss_pred CCEEEEcCCCCCC-----------CHHHHHHHHHHHH
Confidence 3578999999883 7888888887544
No 409
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.47 E-value=6.6e-13 Score=134.52 Aligned_cols=116 Identities=12% Similarity=-0.016 Sum_probs=78.5
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeee--eEEEeecccCceeEEEEc
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSAS--VSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~--~~~~~~~~~~~~~i~liD 83 (1021)
.+..+|+++|..|+|||||+++++... .. . .++. .|+.... ..+.+. +....++++|
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~--f~-~---------~~~~-------~T~~~~~~~~~~~~~--~~~~~l~~~d 60 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRS--FS-L---------NAYS-------PTIKPRYAVNTVEVY--GQEKYLILRE 60 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCC--CC-c---------ccCC-------CccCcceEEEEEEEC--CeEEEEEEEe
Confidence 467899999999999999999996321 11 0 0000 1222111 112222 3356789999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHh-hcCCCEEEEEeCcCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQ-KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~-~~~~p~iiviNK~D~~ 142 (1021)
|+|...|......+++.+|++|+|+|+++.-..+.. ..++... ..++|+++|+||+|+.
T Consensus 61 ~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 61 VGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred cCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 999999988888889999999999999875322222 3333332 2379999999999985
No 410
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.47 E-value=9.5e-13 Score=133.97 Aligned_cols=113 Identities=16% Similarity=0.099 Sum_probs=77.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..++|||||+.+++... ... .+ ..|+... ....+..++....+++|||||+.+
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~--f~~-----------~~-------~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNA--FPG-----------EY-------IPTVFDN-YSANVMVDGKPVNLGLWDTAGQED 61 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC-----------cC-------CCcceee-eEEEEEECCEEEEEEEEECCCchh
Confidence 68999999999999999996311 100 00 1122111 111122233467899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHH-Hh--hcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQ-SQ--KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~-~~--~~~~p~iiviNK~D~~~ 143 (1021)
|...+..+++.+|++|+|+|.++.-..+.. ..|.. +. ..++|+++|.||+|+..
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 62 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 998888899999999999999875444443 23432 22 23689999999999853
No 411
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.47 E-value=5.3e-13 Score=140.15 Aligned_cols=114 Identities=14% Similarity=0.121 Sum_probs=76.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~liDtPG~ 87 (1021)
.+|+++|..|+|||||+++|+...-... . ..|+........+.. ++..+.+++|||||+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~-----------~---------~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~ 62 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV-----------S---------DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ 62 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-----------C---------CceeceEEEEEEEEECCCCEEEEEEEeCCcc
Confidence 5799999999999999999974221100 0 012222211111211 234578999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh----hcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~----~~~~p~iiviNK~D~~ 142 (1021)
..|......+++.+|++|+|+|.++........-| ..+. ....|++++.||+|+.
T Consensus 63 ~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 63 ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred hhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 99998888999999999999999875332222223 2222 2356788899999985
No 412
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.47 E-value=3.7e-13 Score=135.53 Aligned_cols=152 Identities=18% Similarity=0.140 Sum_probs=98.4
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.+.++|.+++|||||++++.+...... ...+.+ +.....+..++ ..+.||||||+++|...
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~--------------~~~t~~---~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEK--------------YDPTIE---DFYRKEIEVDSSPSVLEILDTAGTEQFASM 65 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCchh---heEEEEEEECCEEEEEEEEECCCcccccch
Confidence 467889999999999999987431100 000001 11112232333 35678999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++++|+|.++... ....+++..+.. .++| +++|+||+|+........ .+...+.+..+
T Consensus 66 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~~~~~---~~~~~~~~~~~---- 137 (163)
T cd04176 66 RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVP-IILVGNKVDLESEREVSS---AEGRALAEEWG---- 137 (163)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcCccCH---HHHHHHHHHhC----
Confidence 8899999999999999987543 223344333333 3677 899999999864221111 12223333332
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+++++||+++. ++.++++++.+.
T Consensus 138 -~~~~~~Sa~~~~-----------~v~~l~~~l~~~ 161 (163)
T cd04176 138 -CPFMETSAKSKT-----------MVNELFAEIVRQ 161 (163)
T ss_pred -CEEEEecCCCCC-----------CHHHHHHHHHHh
Confidence 478999999873 888999888753
No 413
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.47 E-value=4.2e-13 Score=136.34 Aligned_cols=156 Identities=20% Similarity=0.172 Sum_probs=101.7
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.+.++|..++|||||++++...... ..+..+.|... .....+......+.+|||||+++|...+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~--------------~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~ 67 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP--------------DYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMR 67 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--------------CCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHh
Confidence 45678899999999999999864311 00111111111 1112222223467899999999999988
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
..+++.+|++|+|+|.++....+. .+++..+.. .++| +++|+||+|+.+.... . .++..++.+..+
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~~~~v-~--~~~~~~~a~~~~----- 138 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIP-LVLVGNKVDLESQRQV-T--TEEGRNLAREFN----- 138 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhhhhcCcc-C--HHHHHHHHHHhC-----
Confidence 899999999999999998665443 333333333 2577 9999999998642111 1 123334444433
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |+++++++|.+.+
T Consensus 139 ~~~~e~Sa~~~~-----------~v~~~f~~l~~~~ 163 (172)
T cd04141 139 CPFFETSAALRH-----------YIDDAFHGLVREI 163 (172)
T ss_pred CEEEEEecCCCC-----------CHHHHHHHHHHHH
Confidence 589999999873 8888888887543
No 414
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.47 E-value=3.6e-13 Score=153.29 Aligned_cols=155 Identities=18% Similarity=0.251 Sum_probs=103.7
Q ss_pred cccc-ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-CeEEEEEecCChh
Q psy5021 648 DLRS-NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-NKHYAHVDCPGHA 725 (1021)
Q Consensus 648 ~l~~-~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-~~~i~liDtpG~~ 725 (1021)
+|+. .-+|++|++|+|||||+++|++....+... .++|..+....+.+. +..+.|+|+||..
T Consensus 154 elk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~y----------------pfTTl~PnlG~v~~~~~~~~~laD~PGli 217 (424)
T PRK12297 154 ELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANY----------------HFTTLVPNLGVVETDDGRSFVMADIPGLI 217 (424)
T ss_pred eecccCcEEEEcCCCCCHHHHHHHHHcCCCccccC----------------CcceeceEEEEEEEeCCceEEEEECCCCc
Confidence 3444 378999999999999999999855333222 244666666666665 6789999999963
Q ss_pred h-------hHHHHHHHhhhCCEEEEEEECCCC----CcHHHHHHHHHHHH-----cCCCeEEEEEeeccccchhhHHHHH
Q psy5021 726 D-------YIKNMITGAAQMDGAILVCSAVDG----PMPQTREHILLARQ-----VGVPNIVVFLNKADCVQDKELLDLV 789 (1021)
Q Consensus 726 ~-------~~~~~~~~~~~aD~ailVvDa~~g----~~~qt~e~l~~~~~-----~~ip~iIvviNK~Dl~~~~~~~~~~ 789 (1021)
. .....+..+..+|++++|+|+++. +..+...+...+.. .+.| +|||+||+|+.+..+
T Consensus 218 ega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP-~IVV~NK~DL~~~~e----- 291 (424)
T PRK12297 218 EGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERP-QIVVANKMDLPEAEE----- 291 (424)
T ss_pred ccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCc-EEEEEeCCCCcCCHH-----
Confidence 2 234455667789999999999753 22222333333333 3667 888999999854221
Q ss_pred HHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 790 EMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 790 ~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+..+.+.++ .+++++||+++ +++++|+++|.+.+
T Consensus 292 --~l~~l~~~l~-----~~i~~iSA~tg-----------eGI~eL~~~L~~~l 326 (424)
T PRK12297 292 --NLEEFKEKLG-----PKVFPISALTG-----------QGLDELLYAVAELL 326 (424)
T ss_pred --HHHHHHHHhC-----CcEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 2222333332 36899999987 38888888887655
No 415
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.47 E-value=2.7e-13 Score=140.30 Aligned_cols=152 Identities=18% Similarity=0.147 Sum_probs=97.6
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~ 731 (1021)
+.++|.+++|||||+++|....... ....+.|.. .......++ ..+.||||||+++|....
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~f~~--------------~~~~t~~~~---~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 64 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNHFVE--------------TYDPTIEDS---YRKQVVVDGQPCMLEVLDTAGQEEYTALR 64 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCc--------------cCCCchHhh---EEEEEEECCEEEEEEEEECCCchhhHHHH
Confidence 4578899999999999998643110 000111111 111122333 357889999999999988
Q ss_pred HHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+++.+|++|+|+|.++..... ..+++..+.. .++| +|+|+||+|+....... ..+..++.+.++
T Consensus 65 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~~~v~---~~~~~~~~~~~~--- 137 (190)
T cd04144 65 DQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVP-IMIVGNKCDKVYEREVS---TEEGAALARRLG--- 137 (190)
T ss_pred HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCC-EEEEEEChhccccCccC---HHHHHHHHHHhC---
Confidence 89999999999999998754332 2334443332 2467 89999999986422111 112233333333
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |++++++.+.+.+
T Consensus 138 --~~~~e~SAk~~~-----------~v~~l~~~l~~~l 162 (190)
T cd04144 138 --CEFIEASAKTNV-----------NVERAFYTLVRAL 162 (190)
T ss_pred --CEEEEecCCCCC-----------CHHHHHHHHHHHH
Confidence 478999999874 7888888877543
No 416
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.47 E-value=6.9e-13 Score=137.07 Aligned_cols=115 Identities=17% Similarity=0.089 Sum_probs=77.9
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
|+|+++|..|+|||||+++|+...- .. .+ ..|+...... ....++....+++|||||+.
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~--~~-----------~~-------~~t~~~~~~~-~i~~~~~~~~l~i~Dt~G~~ 59 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYF--PQ-----------VY-------EPTVFENYVH-DIFVDGLHIELSLWDTAGQE 59 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--CC-----------cc-------CCcceeeeEE-EEEECCEEEEEEEEECCCCh
Confidence 5799999999999999999963211 00 00 0122111111 11112335789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhh--cCCCEEEEEeCcCCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQK--YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~--~~~p~iiviNK~D~~~~ 144 (1021)
+|......+++.+|++|+|+|.++....+... .| ..+.. .+.|+++|+||+|+...
T Consensus 60 ~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 60 EFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA 119 (189)
T ss_pred hccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 99887778889999999999998765444332 23 33332 37899999999998643
No 417
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.46 E-value=2.4e-13 Score=129.33 Aligned_cols=97 Identities=22% Similarity=0.173 Sum_probs=70.2
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC--
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG-- 86 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG-- 86 (1021)
+.|.++|.+++|||||+++|........+ | . .+.|. =++|||||
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~K----------------------T---q--~i~~~-------~~~IDTPGEy 47 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKK----------------------T---Q--AIEYY-------DNTIDTPGEY 47 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCc----------------------c---c--eeEec-------ccEEECChhh
Confidence 57899999999999999999532221111 1 1 11222 25799999
Q ss_pred --CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 87 --HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 --~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+..|..........||.+++|.||++..+.-.- ..+...+.|+|-|+||+|++
T Consensus 48 iE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP---~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 48 IENPRFYHALIVTAQDADVVLLLQDATEPRSVFPP---GFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred eeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCc---hhhcccCCCEEEEEECccCc
Confidence 467777788888899999999999986432221 34455689999999999997
No 418
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.46 E-value=3e-13 Score=121.72 Aligned_cols=81 Identities=28% Similarity=0.276 Sum_probs=70.6
Q ss_pred eEEEEEEEeecCCC-ceEEEEEEEeeEEecCCEEEeCCC---------ceeeEeceEEEeecCCeeccccccCCCEEEEe
Q psy5021 298 FVSLVFKIFHDPFL-GSLSFIRIYSGFIKVGDLVYNSTK---------KVKEKIFRILRMFANSKKDINDAHFGDIVVIV 367 (1021)
Q Consensus 298 ~~~~V~k~~~~~~~-g~~~~~RV~sG~l~~gd~v~~~~~---------~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~ 367 (1021)
++++|||+.++|+. ++++|+|||||+|++||.|++... ...+++.+|+.++|.+..++++|.||||+++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 47899999999997 779999999999999999986321 24589999999999999999999999999999
Q ss_pred cCCccccCCee
Q psy5021 368 GLKESSTGDTL 378 (1021)
Q Consensus 368 gl~~~~~gdtl 378 (1021)
|+++..++.+.
T Consensus 81 gl~~~~~~~~t 91 (94)
T cd04090 81 GIDSSIVKTAT 91 (94)
T ss_pred CcchheeceEE
Confidence 99986655543
No 419
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.46 E-value=6.8e-13 Score=142.10 Aligned_cols=112 Identities=21% Similarity=0.222 Sum_probs=75.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..|+|||||+++++... ... .+ -.|+... ....+..++..+.++||||+|+.+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~--f~~-----------~y-------~pTi~d~-~~k~~~i~~~~~~l~I~Dt~G~~~ 60 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGR--FEE-----------QY-------TPTIEDF-HRKLYSIRGEVYQLDILDTSGNHP 60 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCC--CCC-----------CC-------CCChhHh-EEEEEEECCEEEEEEEEECCCChh
Confidence 58999999999999999997321 110 00 0111100 011122234468899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HHHHHhh------------cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTET-VWFQSQK------------YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~~~~~~------------~~~p~iiviNK~D~~ 142 (1021)
|......++..+|++|+|+|.++....+... +++++.. .++|+|+++||+|+.
T Consensus 61 ~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~ 126 (247)
T cd04143 61 FPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred hhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch
Confidence 9888888889999999999998754333222 2233321 368999999999985
No 420
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.46 E-value=5.2e-13 Score=134.98 Aligned_cols=156 Identities=21% Similarity=0.200 Sum_probs=98.9
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
..++|..++|||||+++|.+.... ...+. .....++. ..+...+..+.+|||||++.+...+..
T Consensus 3 v~ivG~~~vGKTsl~~~l~~~~~~------------~~~~~-~~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 66 (166)
T cd01893 3 IVLIGDEGVGKSSLIMSLVSEEFP------------ENVPR-VLPEITIP---ADVTPERVPTTIVDTSSRPQDRANLAA 66 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhCcCC------------ccCCC-cccceEee---eeecCCeEEEEEEeCCCchhhhHHHhh
Confidence 567899999999999999874311 00000 00011111 122234567889999999998888888
Q ss_pred HhhhCCEEEEEEECCCCCcHHHH-H-HHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEE
Q psy5021 734 GAAQMDGAILVCSAVDGPMPQTR-E-HILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~~qt~-e-~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 809 (1021)
++..+|++++|+|++++...+.. + ++..++.. ++| +++|+||+|+.+..... ..+.++..+.+.+.. ..++
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~---~~~~ 141 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGSSQA-GLEEEMLPIMNEFRE---IETC 141 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhcccccchh-HHHHHHHHHHHHHhc---ccEE
Confidence 88999999999999876554442 2 33444432 567 99999999997632211 112223222222211 1268
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++||+++. |++++++.+...
T Consensus 142 ~e~Sa~~~~-----------~v~~lf~~~~~~ 162 (166)
T cd01893 142 VECSAKTLI-----------NVSEVFYYAQKA 162 (166)
T ss_pred EEecccccc-----------CHHHHHHHHHHH
Confidence 999999873 888898887653
No 421
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.46 E-value=5.3e-13 Score=136.76 Aligned_cols=156 Identities=13% Similarity=0.177 Sum_probs=100.9
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~ 731 (1021)
...+|..++|||||+.+++...- .....++.|... ....+..++ ..+.+|||+|+++|...+
T Consensus 3 i~vlG~~~vGKTsLi~~~~~~~f--------------~~~~~~T~g~~~--~~~~i~~~~~~~~l~iwDt~G~~~~~~~~ 66 (182)
T cd04128 3 IGLLGDAQIGKTSLMVKYVEGEF--------------DEDYIQTLGVNF--MEKTISIRGTEITFSIWDLGGQREFINML 66 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC--------------CCCCCCccceEE--EEEEEEECCEEEEEEEEeCCCchhHHHhh
Confidence 45678899999999999987431 111122223333 223344444 467899999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEeeccccch--hhHHHHHHHHHHHhhhccccCCCc
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV--GVPNIVVFLNKADCVQD--KELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~--~ip~iIvviNK~Dl~~~--~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
..+++.||++++|+|+++....+. .+++..+... ..++ |+|+||+|+... ......+.++..++.+..+
T Consensus 67 ~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~----- 140 (182)
T cd04128 67 PLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK----- 140 (182)
T ss_pred HHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-----
Confidence 888999999999999987543222 3444444442 2232 567999999631 1111122344455555443
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++|. |++++++++.+.+
T Consensus 141 ~~~~e~SAk~g~-----------~v~~lf~~l~~~l 165 (182)
T cd04128 141 APLIFCSTSHSI-----------NVQKIFKIVLAKA 165 (182)
T ss_pred CEEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 578999999873 8888888887644
No 422
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.46 E-value=5.3e-13 Score=140.87 Aligned_cols=154 Identities=16% Similarity=0.107 Sum_probs=101.8
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC---CeEEEEEecCChhhhHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE---NKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~---~~~i~liDtpG~~~~~~~ 730 (1021)
+.++|.+++|||||+++|++... ..+....++.+.....+..+ ...+.||||||++.|...
T Consensus 3 i~ivG~~~vGKSsLi~~l~~~~~----------------~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l 66 (215)
T cd04109 3 IVVLGDGAVGKTSLCRRFAKEGF----------------GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKM 66 (215)
T ss_pred EEEECcCCCCHHHHHHHHhcCCC----------------CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHH
Confidence 56788999999999999987421 01111222334433334332 357789999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHcC-----CCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQVG-----VPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~~-----ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
...+++.+|++|+|+|+++....+ ..+++..+.... .+++|+|.||+|+.+.... ..++...+.+.++
T Consensus 67 ~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v---~~~~~~~~~~~~~--- 140 (215)
T cd04109 67 LDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV---KDDKHARFAQANG--- 140 (215)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc---CHHHHHHHHHHcC---
Confidence 888899999999999998754322 233444444321 1238899999999742211 1123334444443
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++| ++++++++.|.+.+
T Consensus 141 --~~~~~iSAktg-----------~gv~~lf~~l~~~l 165 (215)
T cd04109 141 --MESCLVSAKTG-----------DRVNLLFQQLAAEL 165 (215)
T ss_pred --CEEEEEECCCC-----------CCHHHHHHHHHHHH
Confidence 46889999988 38899999887654
No 423
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.46 E-value=6.6e-13 Score=137.15 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=76.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..++|||||+++|+...-. . .+.+ .-|.+... ..+.. ++..+.+.+|||||+.+
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~--~-----------~~~~---t~~~~~~~--~~~~~--~~~~~~~~i~Dt~g~~~ 61 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFS--E-----------STKS---TIGVDFKI--KTVYI--ENKIIKLQIWDTNGQER 61 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--C-----------CCCC---ceeeEEEE--EEEEE--CCEEEEEEEEECCCcHH
Confidence 6899999999999999999632110 0 0000 00111111 12222 23357889999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHh---hcCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~---~~~~p~iiviNK~D~~ 142 (1021)
|...+...++.+|++|+|+|+++.-.......|. ... ..+.|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 62 FRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred HHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 9999999999999999999998754333333332 222 2358999999999985
No 424
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.46 E-value=1.7e-13 Score=136.42 Aligned_cols=150 Identities=22% Similarity=0.196 Sum_probs=101.4
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+++.|++++|||||+++|+... ...+...++|.+.....+..++ ..+.+||+||+.++..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 65 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK----------------FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA 65 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC----------------CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH
Confidence 356889999999999999999743 2233344666666665566666 6788999999999977
Q ss_pred HHHHHhhhCCEEEEEEECCCC-------CcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 730 NMITGAAQMDGAILVCSAVDG-------PMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g-------~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
........++.++.++|.... ........+..+.. +.| +++++||+|+.... ...+....+...+.
T Consensus 66 ~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~~~~~-----~~~~~~~~~~~~~~ 138 (161)
T TIGR00231 66 IRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVP-IILVGNKIDLRDAK-----LKTHVAFLFAKLNG 138 (161)
T ss_pred HHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCc-EEEEEEcccCCcch-----hhHHHHHHHhhccC
Confidence 766666777777777775543 21222223333322 777 89999999997632 22344444444443
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhh
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLD 839 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~ 839 (1021)
.+++++||..+. ++.+++++|.
T Consensus 139 ----~~~~~~sa~~~~-----------gv~~~~~~l~ 160 (161)
T TIGR00231 139 ----EPIIPLSAETGK-----------NIDSAFKIVE 160 (161)
T ss_pred ----CceEEeecCCCC-----------CHHHHHHHhh
Confidence 468999999773 7888887763
No 425
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.46 E-value=2.7e-13 Score=156.58 Aligned_cols=151 Identities=21% Similarity=0.242 Sum_probs=115.2
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh--
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY-- 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~-- 727 (1021)
+..+.+.+|++|+|||||+|+|++....+++.+ |+|++.+...++..++.+.++|+||...+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwp----------------GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~ 65 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWP----------------GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTA 65 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCC----------------CeeEEEEEEEEEecCceEEEEeCCCcCCCCC
Confidence 456789999999999999999999776665554 89999999999999999999999996544
Q ss_pred ----HHHHHHHh--hhCCEEEEEEECCCCCcHHHHHHH---HHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 728 ----IKNMITGA--AQMDGAILVCSAVDGPMPQTREHI---LLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 728 ----~~~~~~~~--~~aD~ailVvDa~~g~~~qt~e~l---~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
-+-+..++ ..+|+++.|+||++ .++++ .++.++|+| +|+++|++|..+. ..++-+.+++.+
T Consensus 66 ~S~DE~Var~~ll~~~~D~ivnVvDAtn-----LeRnLyltlQLlE~g~p-~ilaLNm~D~A~~----~Gi~ID~~~L~~ 135 (653)
T COG0370 66 YSEDEKVARDFLLEGKPDLIVNVVDATN-----LERNLYLTLQLLELGIP-MILALNMIDEAKK----RGIRIDIEKLSK 135 (653)
T ss_pred CCchHHHHHHHHhcCCCCEEEEEcccch-----HHHHHHHHHHHHHcCCC-eEEEeccHhhHHh----cCCcccHHHHHH
Confidence 22233333 35799999999985 33333 456678999 9999999997652 223333444555
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+| +|++++||++| +|++++++.+.+..
T Consensus 136 ~LG-----vPVv~tvA~~g-----------~G~~~l~~~i~~~~ 163 (653)
T COG0370 136 LLG-----VPVVPTVAKRG-----------EGLEELKRAIIELA 163 (653)
T ss_pred HhC-----CCEEEEEeecC-----------CCHHHHHHHHHHhc
Confidence 555 68999999987 38899999887643
No 426
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.46 E-value=4.3e-13 Score=154.90 Aligned_cols=135 Identities=19% Similarity=0.157 Sum_probs=97.6
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH--
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI-- 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~-- 728 (1021)
.+.++++|.+|+|||||+|+|++....+ .....|+|.+.....+..++..+.+|||||+.++.
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~ai---------------vs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ 267 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAI---------------VSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADF 267 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcc---------------cCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhH
Confidence 3578899999999999999999843211 12235778888888888889999999999985432
Q ss_pred ------HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 729 ------KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 729 ------~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
..+..++..+|++++|+|++++...+.. ++..+...++| +|+|+||+|+... + ...+.+.++
T Consensus 268 ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~p-iIlV~NK~Dl~~~-~--------~~~~~~~~~- 335 (442)
T TIGR00450 268 VERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKP-FILVLNKIDLKIN-S--------LEFFVSSKV- 335 (442)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCC-EEEEEECccCCCc-c--------hhhhhhhcC-
Confidence 2345677899999999999987655444 55555556788 8999999998652 1 111222222
Q ss_pred CCCceEEEEecccc
Q psy5021 803 DGENTKIVIGSALL 816 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~ 816 (1021)
.+++.+||++
T Consensus 336 ----~~~~~vSak~ 345 (442)
T TIGR00450 336 ----LNSSNLSAKQ 345 (442)
T ss_pred ----CceEEEEEec
Confidence 3578899996
No 427
>KOG0468|consensus
Probab=99.46 E-value=2.1e-13 Score=152.67 Aligned_cols=130 Identities=29% Similarity=0.423 Sum_probs=110.3
Q ss_pred ccceeeeeeeeeccchhhhhhhcccccccccc-ccccccccCCchhhhhcCceEeeeEEEEe-----eCCeEEEEEecCC
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGG-EVRAFDTIDNAPEEKERGITISTSHVEYE-----SENKHYAHVDCPG 723 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~-~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~-----~~~~~i~liDtpG 723 (1021)
+...+|.+||-.||||+|++.|.....-..+. .-...+++|.+..|++||.++......+- ...+.++++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 45688999999999999999998754322211 12234678999999999999988776553 2346789999999
Q ss_pred hhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Q psy5021 724 HADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 724 ~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~ 780 (1021)
|-+|...+...++.+|++++|||+.+|++-++...+..+.....| ++||+||+|..
T Consensus 207 HVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~-i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLP-IVVVINKVDRL 262 (971)
T ss_pred cccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCc-EEEEEehhHHH
Confidence 999999999999999999999999999999999999999999999 99999999964
No 428
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.45 E-value=7.4e-13 Score=136.99 Aligned_cols=161 Identities=17% Similarity=0.080 Sum_probs=102.1
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+...++|..++|||||+.++....- ......+.|.... ....++.....+.+|||||+++|...
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f--------------~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l 67 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAF--------------PKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRL 67 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCC--------------CcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhh
Confidence 35677889999999999999987431 1111112221111 11122222345778999999999988
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHH-HHH-HHHHH--cCCCeEEEEEeeccccchhhHHHHH---------HHHHHHhh
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTR-EHI-LLARQ--VGVPNIVVFLNKADCVQDKELLDLV---------EMEIRELL 797 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~-e~l-~~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~~~l 797 (1021)
+..+++.+|++|+|+|.++....+.. ..| ..+.. .++| +++|.||.|+.+.....+.+ .++...+.
T Consensus 68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a 146 (191)
T cd01875 68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVP-ILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALA 146 (191)
T ss_pred hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence 88889999999999999875443332 222 22322 2577 99999999996532111111 12333344
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+..+ ..+++++||++|. |++++++.|.+.+
T Consensus 147 ~~~~----~~~~~e~SAk~g~-----------~v~e~f~~l~~~~ 176 (191)
T cd01875 147 KQIH----AVKYLECSALNQD-----------GVKEVFAEAVRAV 176 (191)
T ss_pred HHcC----CcEEEEeCCCCCC-----------CHHHHHHHHHHHH
Confidence 4433 2479999999873 8888888887644
No 429
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.45 E-value=8.3e-13 Score=134.03 Aligned_cols=114 Identities=17% Similarity=0.130 Sum_probs=75.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..|+|||||+++|+...-..... .+ ........+.+ ++..+.+.+|||||+.+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~------~~-------------~~~~~~~~~~~--~~~~~~l~~~D~~g~~~ 60 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYV------PT-------------VFDNYSATVTV--DGKQVNLGLWDTAGQEE 60 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC------Cc-------------eeeeeEEEEEE--CCEEEEEEEEeCCCccc
Confidence 68999999999999999997432100000 00 01111111111 23367899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHH-HHHh--hcCCCEEEEEeCcCCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQT-ETVW-FQSQ--KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~-~~~~--~~~~p~iiviNK~D~~~~ 144 (1021)
|.......++.+|++++|+|+++....+. ...| .... ..++|+++++||+|+...
T Consensus 61 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 61 YDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDD 119 (171)
T ss_pred ccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhc
Confidence 87777777889999999999987433222 2223 2222 236999999999998644
No 430
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.45 E-value=7.1e-13 Score=133.57 Aligned_cols=156 Identities=19% Similarity=0.180 Sum_probs=101.5
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHHH
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMITG 734 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~ 734 (1021)
.++|..++|||||+++|.+.... ....++.|. ....+...+..+.+|||||+.+|...+..+
T Consensus 3 ~ivG~~~vGKTsli~~~~~~~~~--------------~~~~pt~g~----~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~ 64 (164)
T cd04162 3 LVLGLDGAGKTSLLHSLSSERSL--------------ESVVPTTGF----NSVAIPTQDAIMELLEIGGSQNLRKYWKRY 64 (164)
T ss_pred EEECCCCCCHHHHHHHHhcCCCc--------------ccccccCCc----ceEEEeeCCeEEEEEECCCCcchhHHHHHH
Confidence 56889999999999999974311 111122232 123455667889999999999999999999
Q ss_pred hhhCCEEEEEEECCCCCc-HHHHHHHHHHHH--cCCCeEEEEEeeccccchhhHHHHHHHH--HHHhhhccccCCCceEE
Q psy5021 735 AAQMDGAILVCSAVDGPM-PQTREHILLARQ--VGVPNIVVFLNKADCVQDKELLDLVEME--IRELLTEYDFDGENTKI 809 (1021)
Q Consensus 735 ~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~i 809 (1021)
++.+|++|+|+|+++... ...++++..+.. .++| +++|+||+|+.... ..+.+... +..+.+. ..+.+
T Consensus 65 ~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~-----~~~~~ 137 (164)
T cd04162 65 LSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLP-LVVLANKQDLPAAR-SVQEIHKELELEPIARG-----RRWIL 137 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCc-EEEEEeCcCCcCCC-CHHHHHHHhCChhhcCC-----CceEE
Confidence 999999999999987542 233344443332 3677 99999999986522 12222211 1222222 24678
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+++||++.-+. ...++++++++.|.+
T Consensus 138 ~~~Sa~~~~s~-----~~~~~v~~~~~~~~~ 163 (164)
T cd04162 138 QGTSLDDDGSP-----SRMEAVKDLLSQLIN 163 (164)
T ss_pred EEeeecCCCCh-----hHHHHHHHHHHHHhc
Confidence 99999973211 123588888887754
No 431
>PRK11058 GTPase HflX; Provisional
Probab=99.45 E-value=8.7e-13 Score=151.41 Aligned_cols=114 Identities=17% Similarity=0.114 Sum_probs=77.6
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+..|+++|.+|+|||||+|+|........ ...+.|++.....+.+.. ...+.++||||.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~------------------~~~~tTld~~~~~i~l~~---~~~~~l~DTaG~ 255 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAA------------------DQLFATLDPTLRRIDVAD---VGETVLADTVGF 255 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeec------------------cCCCCCcCCceEEEEeCC---CCeEEEEecCcc
Confidence 45799999999999999999963221110 112345555544555551 237899999998
Q ss_pred CCc--------HHHHHHHhhccCeEEEEEeCCCCCchhHH----HHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 88 VDF--------TIEVERSLRVLDGAVIIICASSGIQPQTE----TVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f--------~~~~~~~l~~~D~~ilvvda~~g~~~~t~----~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
... ...+...++.+|++|+|+|+++....... .++..+...++|+++|+||+|+.
T Consensus 256 ~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 256 IRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred cccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 442 12244556889999999999987543333 33444444579999999999985
No 432
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.45 E-value=2.7e-13 Score=137.65 Aligned_cols=158 Identities=18% Similarity=0.128 Sum_probs=103.8
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
...+|..++|||||+.+++... +......+.|.+.. ....++.....+.+|||+|+++|...+..
T Consensus 4 ivv~G~~~vGKTsli~~~~~~~--------------f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~ 68 (176)
T cd04133 4 CVTVGDGAVGKTCMLICYTSNK--------------FPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLRPL 68 (176)
T ss_pred EEEECCCCCcHHHHHHHHhcCC--------------CCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccchh
Confidence 5678889999999999999743 11112222232221 11222222356789999999999988888
Q ss_pred HhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhH-------HHHHHHHHHHhhhcccc
Q psy5021 734 GAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKEL-------LDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~-------~~~~~~~~~~~l~~~~~ 802 (1021)
+++.+|++|||+|.++....+.. .++..+... ++| +|+|.||+|+.+.... ..-..++..++.+..+.
T Consensus 69 ~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 147 (176)
T cd04133 69 SYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA 147 (176)
T ss_pred hcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC
Confidence 99999999999999875554432 345544432 566 9999999999642110 00112344455554432
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++.+||++|. +++++++.+.+.+
T Consensus 148 ----~~~~E~SAk~~~-----------nV~~~F~~~~~~~ 172 (176)
T cd04133 148 ----AAYIECSSKTQQ-----------NVKAVFDAAIKVV 172 (176)
T ss_pred ----CEEEECCCCccc-----------CHHHHHHHHHHHH
Confidence 268999999884 8888988887643
No 433
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.45 E-value=7.6e-13 Score=134.83 Aligned_cols=155 Identities=17% Similarity=0.081 Sum_probs=99.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
...++|..++|||||+.++....- .....++.|... ...+..++ ..+.+|||||+++|...
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f--------------~~~~~pt~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKF--------------PSEYVPTVFDNY---AVTVMIGGEPYTLGLFDTAGQEDYDRL 65 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC--------------CCCCCCceeeee---EEEEEECCEEEEEEEEECCCccchhhh
Confidence 456788999999999999997431 111111222111 11233344 56779999999999887
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHH-H-HHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HHHHHHhh
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTR-E-HILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EMEIRELL 797 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~-e-~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~~~l 797 (1021)
+..+++.+|++|+|+|.++....+.. + ++..+... ++| +|+|.||+|+.+..+..+.. .++..++.
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a 144 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP-FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA 144 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence 77788999999999999875543332 3 33333332 567 99999999986532211111 11223333
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+..+ ...++++||++|. |++++++.+..
T Consensus 145 ~~~~----~~~~~e~SA~tg~-----------~v~~~f~~~~~ 172 (175)
T cd01874 145 RDLK----AVKYVECSALTQK-----------GLKNVFDEAIL 172 (175)
T ss_pred HHhC----CcEEEEecCCCCC-----------CHHHHHHHHHH
Confidence 3332 2579999999884 88888887754
No 434
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.45 E-value=8.3e-13 Score=132.51 Aligned_cols=152 Identities=17% Similarity=0.184 Sum_probs=97.3
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.+.|.+++|||||+++|++.... . ...+.|.+. ....+ .....+.+|||||+.++...+..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~------------~---~~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~~ 63 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELV------------T---TIPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWKC 63 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcc------------c---ccCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHHH
Confidence 356889999999999999974311 0 011122222 12222 13467899999999999888888
Q ss_pred HhhhCCEEEEEEECCCCCc-HHHHHHHHHH-H---HcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC-CCce
Q psy5021 734 GAAQMDGAILVCSAVDGPM-PQTREHILLA-R---QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD-GENT 807 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~-~qt~e~l~~~-~---~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 807 (1021)
++..+|++++|+|+++... .....++... . ..+.| +++|+||+|+..... .+ ++...+....+. ..+.
T Consensus 64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~~ 137 (160)
T cd04156 64 YLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVP-VVLLANKQDLPGALT-AE----EITRRFKLKKYCSDRDW 137 (160)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECcccccCcC-HH----HHHHHcCCcccCCCCcE
Confidence 8999999999999987542 2223333222 1 14677 999999999864211 12 222222111111 1246
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+++++||++| +|++++++.|.+
T Consensus 138 ~~~~~Sa~~~-----------~gv~~~~~~i~~ 159 (160)
T cd04156 138 YVQPCSAVTG-----------EGLAEAFRKLAS 159 (160)
T ss_pred EEEecccccC-----------CChHHHHHHHhc
Confidence 7999999987 488999988854
No 435
>KOG0094|consensus
Probab=99.45 E-value=3.8e-12 Score=123.45 Aligned_cols=119 Identities=18% Similarity=0.106 Sum_probs=88.3
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.-+.-.+.++|..++|||||+.++.+..-- ...+-||.....+..+...+..+.+.||||
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd--------------------~~YqATIGiDFlskt~~l~d~~vrLQlWDT 78 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFD--------------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDT 78 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhc--------------------ccccceeeeEEEEEEEEEcCcEEEEEEEec
Confidence 344568999999999999999999864321 122336665555554444555789999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCch-hHHHHHHHHhhcC----CCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQP-QTETVWFQSQKYK----VPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~-~t~~~~~~~~~~~----~p~iiviNK~D~~~ 143 (1021)
+|++.|...+.+++|.+..||+|.|.++.-.. +|...++.++..+ +-+++|.||.|+..
T Consensus 79 AGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 79 AGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD 142 (221)
T ss_pred ccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc
Confidence 99999999999999999999999999976444 4444445555443 33566789999964
No 436
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.45 E-value=5e-13 Score=138.70 Aligned_cols=157 Identities=13% Similarity=0.119 Sum_probs=100.6
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~ 731 (1021)
+.++|.+++|||||+++|++..... .+.....|.+.... .+..++ ..+.+|||||+++|....
T Consensus 3 i~vvG~~~vGKSsLi~~~~~~~~~~-------------~~~~~t~~~~~~~~--~~~~~~~~~~l~i~D~~G~~~~~~~~ 67 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHHRFLV-------------GPYQNTIGAAFVAK--RMVVGERVVTLGIWDTAGSERYEAMS 67 (193)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCC-------------cCcccceeeEEEEE--EEEECCEEEEEEEEECCCchhhhhhh
Confidence 5678899999999999999743110 01112223323222 233444 346699999999998877
Q ss_pred HHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCeEEEEEeeccccchhhHHHH-HHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV--GVPNIVVFLNKADCVQDKELLDL-VEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 807 (1021)
..+++.+|++++|+|.++....+ ...++..+... ++| +++|+||+|+.+....... ...++.++...++ .
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-----~ 141 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-----A 141 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCC-EEEEEEcccccccccccCccCHHHHHHHHHHcC-----C
Confidence 77788999999999998754322 23444444443 567 9999999998642111111 1123444444333 5
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+++++||+++. +++.|++.|.+.+
T Consensus 142 ~~~~~Sa~~~~-----------gv~~l~~~i~~~~ 165 (193)
T cd04118 142 QHFETSSKTGQ-----------NVDELFQKVAEDF 165 (193)
T ss_pred eEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 68999999873 7888888887643
No 437
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.45 E-value=2.4e-13 Score=162.63 Aligned_cols=145 Identities=21% Similarity=0.241 Sum_probs=103.9
Q ss_pred eeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH------H
Q psy5021 658 GHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN------M 731 (1021)
Q Consensus 658 g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~------~ 731 (1021)
|.+|+|||||+|+|++... ......|+|++.....+++++..+.+|||||+.++... +
T Consensus 1 G~pNvGKSSL~N~Ltg~~~----------------~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ----------------TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC----------------eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHH
Confidence 6799999999999997432 12234688999888888888889999999999887432 2
Q ss_pred HHHh--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEE
Q psy5021 732 ITGA--AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809 (1021)
Q Consensus 732 ~~~~--~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 809 (1021)
..++ ..+|++++|+|+++. .+..+....+...++| +++|+||+|+.+.... ..+.+.+.+.++ +++
T Consensus 65 ~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~~i----~~d~~~L~~~lg-----~pv 132 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIP-MILALNLVDEAEKKGI----RIDEEKLEERLG-----VPV 132 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCC-EEEEEehhHHHHhCCC----hhhHHHHHHHcC-----CCE
Confidence 2222 478999999999873 2333444455667888 8999999998642211 122333444444 579
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++||++| +|++++++.+.+.
T Consensus 133 v~tSA~tg-----------~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 133 VPTSATEG-----------RGIERLKDAIRKA 153 (591)
T ss_pred EEEECCCC-----------CCHHHHHHHHHHH
Confidence 99999987 3889999988763
No 438
>PLN03118 Rab family protein; Provisional
Probab=99.45 E-value=7.5e-13 Score=139.37 Aligned_cols=157 Identities=16% Similarity=0.096 Sum_probs=103.0
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+.++|.+++|||||+++|++.... ......|.+.......+......+.||||||+++|...
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 78 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVE---------------DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTL 78 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC---------------CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHH
Confidence 456788999999999999999874311 11122233333333333333356789999999999998
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHH-HHHH-HHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTR-EHIL-LARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~-e~l~-~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
+..+++.+|++|+|+|+++....+.. +.|. .+.. .+.| +++|+||+|+....... .++...+....+
T Consensus 79 ~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~~~i~---~~~~~~~~~~~~--- 151 (211)
T PLN03118 79 TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDRESERDVS---REEGMALAKEHG--- 151 (211)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCccC---HHHHHHHHHHcC---
Confidence 88999999999999999875433332 2232 2222 2456 88899999987522111 122223333332
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||+++. +++++++.|.+.+
T Consensus 152 --~~~~e~SAk~~~-----------~v~~l~~~l~~~~ 176 (211)
T PLN03118 152 --CLFLECSAKTRE-----------NVEQCFEELALKI 176 (211)
T ss_pred --CEEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 578999999873 8888888887644
No 439
>PLN03110 Rab GTPase; Provisional
Probab=99.44 E-value=6.6e-13 Score=140.06 Aligned_cols=155 Identities=17% Similarity=0.131 Sum_probs=103.1
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+.++|..++|||||+++|++.... . +....+..+.....+..++ ..+.||||||+++|..
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~--------------~--~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~ 76 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFC--------------L--ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA 76 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--------------C--CCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 57888999999999999999874311 1 1112223333333344433 4778999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.+..+++.+|++|+|+|.++....+. ..++..+... ++| +++|+||+|+.+...... ++...+....
T Consensus 77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~~~---~~~~~l~~~~----- 147 (216)
T PLN03110 77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV-IMMAGNKSDLNHLRSVAE---EDGQALAEKE----- 147 (216)
T ss_pred HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEEChhcccccCCCH---HHHHHHHHHc-----
Confidence 88888999999999999987543333 3344444443 577 899999999864221111 1222232222
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.++++++||++|. +++++++.|...+
T Consensus 148 ~~~~~e~SA~~g~-----------~v~~lf~~l~~~i 173 (216)
T PLN03110 148 GLSFLETSALEAT-----------NVEKAFQTILLEI 173 (216)
T ss_pred CCEEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 3589999999884 7777777776544
No 440
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.44 E-value=1.2e-12 Score=133.21 Aligned_cols=157 Identities=18% Similarity=0.111 Sum_probs=99.6
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
...++|..++|||||+.+++...-. .......+-.. .....++.....+.+|||||+++|...+.
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f~--------------~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAFP--------------GEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRP 67 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--------------CcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhh
Confidence 4567889999999999999874310 00011111111 01112222235678999999999988888
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHH-H-HHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HHHHHHhhhc
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTR-E-HILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EMEIRELLTE 799 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~-e-~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~~~l~~ 799 (1021)
.+++.+|++|+|+|.++....+.. + ++..+... ++| +|+|.||+|+.+.....+.+ .++..++.+.
T Consensus 68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 146 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 146 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 888999999999999875443332 2 33333332 467 99999999996422111111 1233344444
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++ ..+++++||++|. |++++++.+.+
T Consensus 147 ~~----~~~~~e~Sa~~~~-----------~i~~~f~~l~~ 172 (174)
T cd01871 147 IG----AVKYLECSALTQK-----------GLKTVFDEAIR 172 (174)
T ss_pred cC----CcEEEEecccccC-----------CHHHHHHHHHH
Confidence 43 2479999999884 88999988764
No 441
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.44 E-value=1.2e-12 Score=133.15 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=103.7
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+....++.|.+++|||||+++|.+.... ......|.++ ..++..+..+.+||+||+.++.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~---------------~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~~~~ 72 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS---------------HITPTQGFNI----KTVQSDGFKLNVWDIGGQRAIR 72 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc---------------ccCCCCCcce----EEEEECCEEEEEEECCCCHHHH
Confidence 44678999999999999999999874210 0112223322 2344567889999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHH----HHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLA----RQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~----~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+...+..+|++++|+|+.+... ......+... ...++| +++++||+|+.+... .+. +.+.+....+.
T Consensus 73 ~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-~~~----i~~~l~~~~~~ 146 (173)
T cd04155 73 PYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVP-VLVFANKQDLATAAP-AEE----IAEALNLHDLR 146 (173)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECCCCccCCC-HHH----HHHHcCCcccC
Confidence 888888899999999999986321 2223233222 234678 889999999865221 122 22222222222
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
....+++++||++| +|+++++++|.+
T Consensus 147 ~~~~~~~~~Sa~~~-----------~gi~~~~~~l~~ 172 (173)
T cd04155 147 DRTWHIQACSAKTG-----------EGLQEGMNWVCK 172 (173)
T ss_pred CCeEEEEEeECCCC-----------CCHHHHHHHHhc
Confidence 22346789999987 489999998854
No 442
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.44 E-value=4.4e-13 Score=139.11 Aligned_cols=155 Identities=17% Similarity=0.035 Sum_probs=93.7
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH--
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI-- 728 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~-- 728 (1021)
.+.++|.+++|||||++++++..... +....++.+.....+..++ ..+.||||||+.+|.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~----------------~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~ 65 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPE----------------EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT 65 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCc----------------ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCcc
Confidence 45788999999999999999743110 1111111122112233344 467799999976542
Q ss_pred ------HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH------cCCCeEEEEEeeccccchhhHHHHHHHHHHH
Q psy5021 729 ------KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ------VGVPNIVVFLNKADCVQDKELLDLVEMEIRE 795 (1021)
Q Consensus 729 ------~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~ 795 (1021)
.....+++.+|++|+|+|+++....+. ..++..+.. .++| +|+|+||+|+....... .+++..
T Consensus 66 ~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~p-iiivgNK~Dl~~~~~~~---~~~~~~ 141 (198)
T cd04142 66 AGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPP-IVVVGNKRDQQRHRFAP---RHVLSV 141 (198)
T ss_pred chhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCC-EEEEEECcccccccccc---HHHHHH
Confidence 123345688999999999987543332 222332222 3567 99999999996521111 112333
Q ss_pred hhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 796 LLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 796 ~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+.++. .+++++++||++|. |++.|++.+...+
T Consensus 142 ~~~~~----~~~~~~e~Sak~g~-----------~v~~lf~~i~~~~ 173 (198)
T cd04142 142 LVRKS----WKCGYLECSAKYNW-----------HILLLFKELLISA 173 (198)
T ss_pred HHHHh----cCCcEEEecCCCCC-----------CHHHHHHHHHHHh
Confidence 32221 13689999999884 8888888887543
No 443
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.44 E-value=9.3e-13 Score=132.19 Aligned_cols=153 Identities=22% Similarity=0.158 Sum_probs=99.2
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
...++|.+++|||||+++|+...... .....++.......+...+ ..+.+||+||++.|...
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 65 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE----------------KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHAL 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC----------------CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHh
Confidence 45788999999999999999743110 0111122222222233333 46789999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
+..++..+|++++|+|++++...+. ..++..+... ++| +++++||+|+....... .+++.++.+..+
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~~~~---~~~~~~~~~~~~----- 136 (162)
T cd04123 66 GPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQRVVS---KSEAEEYAKSVG----- 136 (162)
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCCC---HHHHHHHHHHcC-----
Confidence 8888899999999999987654332 2333333322 466 89999999987522110 122333333333
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+++++|++++ .++++++++|.+.
T Consensus 137 ~~~~~~s~~~~-----------~gi~~~~~~l~~~ 160 (162)
T cd04123 137 AKHFETSAKTG-----------KGIEELFLSLAKR 160 (162)
T ss_pred CEEEEEeCCCC-----------CCHHHHHHHHHHH
Confidence 46899999987 3889999988653
No 444
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.44 E-value=9.4e-13 Score=135.03 Aligned_cols=156 Identities=21% Similarity=0.142 Sum_probs=101.9
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
...+.++|..++|||||++++...... ...++.|..+ ..++..+..+.+|||||+++|...
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~---------------~~~~T~~~~~----~~~~~~~~~~~l~D~~G~~~~~~~ 77 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV---------------TTIPTIGFNV----ETVEYKNLKFTMWDVGGQDKLRPL 77 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc---------------ccCCccccce----EEEEECCEEEEEEECCCCHhHHHH
Confidence 356788899999999999999753210 0112223222 234456788999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGP-MPQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++|+|+|+++.. +....+.+..... ...| ++||+||.|+.+... .+ ++...+....+...
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~l~~~~~~~~ 151 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV-LLVFANKQDLPNAMS-TT----EVTEKLGLHSVRQR 151 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCCCC-HH----HHHHHhCCCcccCC
Confidence 999999999999999998632 2223333332221 2455 999999999865211 11 22222221112223
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++.++++||++|. |+++++++|.+.+
T Consensus 152 ~~~~~~~Sa~tg~-----------gv~e~~~~l~~~i 177 (182)
T PTZ00133 152 NWYIQGCCATTAQ-----------GLYEGLDWLSANI 177 (182)
T ss_pred cEEEEeeeCCCCC-----------CHHHHHHHHHHHH
Confidence 4567899999883 8899999887643
No 445
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.43 E-value=1.2e-12 Score=131.43 Aligned_cols=152 Identities=20% Similarity=0.159 Sum_probs=99.8
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.+.++|..++|||||+++++...- ...... .+..+.....+..++ ..+.+|||||+++|...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~--------------~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 65 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEF--------------HSSHIS--TIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI 65 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC--------------CCCCCC--ceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhh
Confidence 356889999999999999986431 111112 222333333344444 46789999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
+..+++.+|++++|+|.++.... ....++..+... ++| ++++.||+|+.+...... ++...+.+..+
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~v~~---~~~~~~~~~~~----- 136 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKRQVGD---EQGNKLAKEYG----- 136 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCCCH---HHHHHHHHHcC-----
Confidence 88889999999999998874332 223333333332 456 899999999865221111 23333333333
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+++++||++|. |++++++.|.+
T Consensus 137 ~~~~e~Sa~~~~-----------~v~~~f~~l~~ 159 (161)
T cd04117 137 MDFFETSACTNS-----------NIKESFTRLTE 159 (161)
T ss_pred CEEEEEeCCCCC-----------CHHHHHHHHHh
Confidence 578999999873 88899988864
No 446
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.43 E-value=1.2e-12 Score=131.80 Aligned_cols=156 Identities=16% Similarity=0.125 Sum_probs=99.0
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe-eCCeEEEEEecCChhhhHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE-SENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~-~~~~~i~liDtpG~~~~~~~~ 731 (1021)
.+.++|.+++|||||+++|...... .........|.........+. .....+.+|||||++.|...+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~------------~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 69 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAV------------FPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMV 69 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC------------cCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHH
Confidence 3567889999999999999853100 001111222333322333332 234678899999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
...+..+|++++|+|.++..... ...++..+... ++| +|+|+||+|+.+..+... .+...+....+ .+
T Consensus 70 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~-----~~ 140 (164)
T cd04101 70 SNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMP-GVLVGNKMDLADKAEVTD---AQAQAFAQANQ-----LK 140 (164)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccCCCH---HHHHHHHHHcC-----Ce
Confidence 88889999999999998743322 23333333333 577 899999999865321111 11122222222 57
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++||+++ .+++++++.|.+
T Consensus 141 ~~~~Sa~~~-----------~gi~~l~~~l~~ 161 (164)
T cd04101 141 FFKTSALRG-----------VGYEEPFESLAR 161 (164)
T ss_pred EEEEeCCCC-----------CChHHHHHHHHH
Confidence 899999987 388889988865
No 447
>KOG0078|consensus
Probab=99.43 E-value=1.2e-12 Score=129.82 Aligned_cols=152 Identities=20% Similarity=0.136 Sum_probs=105.7
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
-.-.+|-+++|||+|+-++..+. +....-...|+ +.....++.++ ..+.+|||+|+++|...
T Consensus 14 kvlliGDs~vGKt~~l~rf~d~~--------------f~~~~~sTiGI--DFk~kti~l~g~~i~lQiWDtaGQerf~ti 77 (207)
T KOG0078|consen 14 KLLLIGDSGVGKTCLLLRFSDDS--------------FNTSFISTIGI--DFKIKTIELDGKKIKLQIWDTAGQERFRTI 77 (207)
T ss_pred EEEEECCCCCchhHhhhhhhhcc--------------CcCCccceEEE--EEEEEEEEeCCeEEEEEEEEcccchhHHHH
Confidence 34566779999999999998754 22222233344 44444455554 45678999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
+..|++.|++++||+|.++... ...+.++.....+ +++ +++|.||+|+.... .--.++-+++...+|
T Consensus 78 ~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~-~~LvGNK~D~~~~R---~V~~e~ge~lA~e~G----- 148 (207)
T KOG0078|consen 78 TTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVV-KILVGNKCDLEEKR---QVSKERGEALAREYG----- 148 (207)
T ss_pred HHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCc-EEEeeccccccccc---cccHHHHHHHHHHhC-----
Confidence 9999999999999999887433 3334444444444 677 88899999987522 112344556666676
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++|+.+||++|. |+.+.+-.|.+
T Consensus 149 ~~F~EtSAk~~~-----------NI~eaF~~La~ 171 (207)
T KOG0078|consen 149 IKFFETSAKTNF-----------NIEEAFLSLAR 171 (207)
T ss_pred CeEEEccccCCC-----------CHHHHHHHHHH
Confidence 589999999985 66665555554
No 448
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.43 E-value=8.8e-13 Score=136.25 Aligned_cols=159 Identities=15% Similarity=0.046 Sum_probs=100.3
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.++|..++|||||++++++..... ....+.+... .....++.....+.||||||+++|...+..
T Consensus 3 ivivG~~~vGKTsli~~~~~~~~~~--------------~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~ 67 (189)
T cd04134 3 VVVLGDGACGKTSLLNVFTRGYFPQ--------------VYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSL 67 (189)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--------------ccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccc
Confidence 4678899999999999998743110 0111111111 111222222356889999999999777777
Q ss_pred HhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhHHHH---------HHHHHHHhhhcc
Q psy5021 734 GAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKELLDL---------VEMEIRELLTEY 800 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~---------~~~~~~~~l~~~ 800 (1021)
+++.+|++++|+|.++....+.. .++..+... +.| +|+|.||+|+.+.....+. ..++...+.+..
T Consensus 68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 146 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVK-LVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRI 146 (189)
T ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 88999999999999875444333 234444432 567 9999999999753221110 011223333333
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
+ .++++++||++|. |+++++++|.+.+.
T Consensus 147 ~----~~~~~e~SAk~~~-----------~v~e~f~~l~~~~~ 174 (189)
T cd04134 147 N----ALRYLECSAKLNR-----------GVNEAFTEAARVAL 174 (189)
T ss_pred C----CCEEEEccCCcCC-----------CHHHHHHHHHHHHh
Confidence 2 2578999999873 88899988876543
No 449
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.43 E-value=1.6e-12 Score=132.63 Aligned_cols=113 Identities=17% Similarity=0.100 Sum_probs=75.0
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeee-eEEEeecccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSAS-VSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~-~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
++|+++|+.++|||||+++|+...-.-. + -.|+.... ..+.+ ++....+.+|||||+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~-------------~-------~~t~~~~~~~~~~~--~~~~~~l~i~Dt~G~ 59 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEV-------------Y-------VPTVFENYVADIEV--DGKQVELALWDTAGQ 59 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCC-------------C-------CCccccceEEEEEE--CCEEEEEEEEeCCCc
Confidence 5799999999999999999974221100 0 00111111 12222 233567899999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHH-HHhh--cCCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWF-QSQK--YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~-~~~~--~~~p~iiviNK~D~~~ 143 (1021)
.+|......+++.+|++++|+|.++....... ..|. .+.. .++|+++++||+|+..
T Consensus 60 ~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 60 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred hhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence 99887777788999999999999864322221 2232 2222 4799999999999853
No 450
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.43 E-value=7.9e-13 Score=158.21 Aligned_cols=104 Identities=21% Similarity=0.238 Sum_probs=77.2
Q ss_pred eCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCcHHH-
Q psy5021 15 AHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIE- 93 (1021)
Q Consensus 15 G~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~- 93 (1021)
|.+|+|||||+|+|.... ...+ ..+|+|++.....+.++ ++.+++|||||+.+|...
T Consensus 1 G~pNvGKSSL~N~Ltg~~---~~v~---------------n~pG~Tv~~~~~~i~~~----~~~i~lvDtPG~~~~~~~s 58 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN---QTVG---------------NWPGVTVEKKEGKLGFQ----GEDIEIVDLPGIYSLTTFS 58 (591)
T ss_pred CCCCCCHHHHHHHHhCCC---Ceec---------------CCCCeEEEEEEEEEEEC----CeEEEEEECCCccccCccc
Confidence 789999999999995321 1111 23578888887777787 778999999999888543
Q ss_pred ----HH-HHh--hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 94 ----VE-RSL--RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 94 ----~~-~~l--~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+. .++ ..+|++++|+|+++. ........++.+.++|+++++||+|+.
T Consensus 59 ~~e~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 59 LEEEVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred hHHHHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHH
Confidence 22 222 468999999999873 233444556667899999999999974
No 451
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.43 E-value=1.3e-12 Score=130.30 Aligned_cols=152 Identities=23% Similarity=0.225 Sum_probs=102.7
Q ss_pred eeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-CeEEEEEecCChhhhH-------
Q psy5021 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-NKHYAHVDCPGHADYI------- 728 (1021)
Q Consensus 657 ~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-~~~i~liDtpG~~~~~------- 728 (1021)
+|.+++|||||+++|++..... .....+.|.......+... ...+.+|||||+.++.
T Consensus 2 ~G~~gsGKstl~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~ 66 (163)
T cd00880 2 FGRTNAGKSSLLNALLGQEVAI---------------VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRERE 66 (163)
T ss_pred cCCCCCCHHHHHHHHhCccccc---------------cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHH
Confidence 6889999999999999753221 1122344555555445444 6789999999987653
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
..+...++.+|++++|+|+..........+.......+.| +++++||+|+........... . ..... ......+
T Consensus 67 ~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~-~-~~~~~---~~~~~~~ 140 (163)
T cd00880 67 ELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKP-VLLVLNKIDLLPEEEEEELLE-L-RLLIL---LLLLGLP 140 (163)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCe-EEEEEEccccCChhhHHHHHH-H-HHhhc---ccccCCc
Confidence 3445567899999999999987776666556666667888 899999999986332211111 0 11111 1123468
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++||.++. ++..++++|.+
T Consensus 141 ~~~~sa~~~~-----------~v~~l~~~l~~ 161 (163)
T cd00880 141 VIAVSALTGE-----------GIDELREALIE 161 (163)
T ss_pred eEEEeeeccC-----------CHHHHHHHHHh
Confidence 9999999773 78888888765
No 452
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.43 E-value=9.3e-13 Score=133.38 Aligned_cols=155 Identities=17% Similarity=0.118 Sum_probs=98.5
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
....+|.+++|||||++++.+..... ......+... .....+......+.+|||||+++|...+.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~--------------~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 67 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIE--------------SYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRE 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc--------------ccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhH
Confidence 46788999999999999998643110 0111111111 11122222235678999999999999988
Q ss_pred HHhhhCCEEEEEEECCCCCcHHH-HHHHHHHH----HcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQT-REHILLAR----QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~----~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
.++..+|++++|+|.++....+. ..+..... ..++| +++++||+|+.+.... ..++...+.+.++ .+
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~~~---~~~~~~~~~~~~~----~~ 139 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDRQV---SREDGVSLSQQWG----NV 139 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCC-EEEEEEChhccccCcc---CHHHHHHHHHHcC----Cc
Confidence 89999999999999987543222 22222222 23678 8889999998652211 1122233333333 25
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++||+++. +++++++++...
T Consensus 140 ~~~~~SA~~~~-----------~i~~~f~~i~~~ 162 (168)
T cd04177 140 PFYETSARKRT-----------NVDEVFIDLVRQ 162 (168)
T ss_pred eEEEeeCCCCC-----------CHHHHHHHHHHH
Confidence 79999999873 788888888653
No 453
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.42 E-value=1.1e-12 Score=140.51 Aligned_cols=157 Identities=19% Similarity=0.101 Sum_probs=100.1
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.+.++|..++|||||++++++..... ....+.+ +.....+..++ ..+.||||+|+++|...
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~--------------~y~pTi~---d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~ 64 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE--------------QYTPTIE---DFHRKLYSIRGEVYQLDILDTSGNHPFPAM 64 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCChh---HhEEEEEEECCEEEEEEEEECCCChhhhHH
Confidence 35678999999999999998643110 0011111 22222333344 56789999999999877
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH------------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ------------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~------------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
...++..+|++|+|+|.++....+. ..++..+.. .++| +|+|+||+|+..... ...+++.+++
T Consensus 65 ~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgNK~Dl~~~~~---v~~~ei~~~~ 140 (247)
T cd04143 65 RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP-MVICGNKADRDFPRE---VQRDEVEQLV 140 (247)
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCc-EEEEEECccchhccc---cCHHHHHHHH
Confidence 7777889999999999987543222 223333322 2567 999999999864211 1112344433
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
... ..+.++++||++|. |+++++++|.+....|
T Consensus 141 ~~~----~~~~~~evSAktg~-----------gI~elf~~L~~~~~~p 173 (247)
T cd04143 141 GGD----ENCAYFEVSAKKNS-----------NLDEMFRALFSLAKLP 173 (247)
T ss_pred Hhc----CCCEEEEEeCCCCC-----------CHHHHHHHHHHHhccc
Confidence 221 13579999999873 8899999998755434
No 454
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.42 E-value=4.5e-12 Score=129.62 Aligned_cols=114 Identities=15% Similarity=0.089 Sum_probs=79.8
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-..|+++|..++|||||+.+++...- . .++ ..|+.... ......++....+.+|||+|.
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f--~-----------~~~-------~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~ 63 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF--P-----------ENY-------VPTVFENY-TASFEIDTQRIELSLWDTSGS 63 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC--C-----------Ccc-------CCceeeee-EEEEEECCEEEEEEEEECCCc
Confidence 45799999999999999999963211 0 011 11332211 111222344678999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHH-HHhh--cCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWF-QSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~-~~~~--~~~p~iiviNK~D~~ 142 (1021)
..|......+++.+|++|+|+|.++....+.. ..|. .+.. .+.|+++|.||+|+.
T Consensus 64 e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 64 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 99998888899999999999999886554443 4443 3322 368999999999984
No 455
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.42 E-value=4.5e-12 Score=122.79 Aligned_cols=155 Identities=20% Similarity=0.163 Sum_probs=110.8
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC-eEEEEEecCChhh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN-KHYAHVDCPGHAD 726 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-~~i~liDtpG~~~ 726 (1021)
.++..++.++|..++||||++.++.............. +..+. .|-.|+...+..++..+ ..+.|+|||||++
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~----~s~k~--kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R 80 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASS----VSGKG--KRPTTVAMDFGSIELDEDTGVHLFGTPGQER 80 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccc----ccccc--ccceeEeecccceEEcCcceEEEecCCCcHH
Confidence 35667888999999999999999987543222111100 11111 23356666666666655 7899999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC-CCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVG-VPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~-ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
|--+|...++.++++|++||++.+.....++.+....... +| ++|++||.|+.+... - ++++++++.-. .
T Consensus 81 F~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a~p-p----e~i~e~l~~~~---~ 151 (187)
T COG2229 81 FKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIP-VVVAINKQDLFDALP-P----EKIREALKLEL---L 151 (187)
T ss_pred HHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCC-EEEEeeccccCCCCC-H----HHHHHHHHhcc---C
Confidence 9999999999999999999999987776677788888877 67 999999999976211 1 23344443221 2
Q ss_pred ceEEEEeccccc
Q psy5021 806 NTKIVIGSALLA 817 (1021)
Q Consensus 806 ~~~ii~iSa~~~ 817 (1021)
+.++|+++|..+
T Consensus 152 ~~~vi~~~a~e~ 163 (187)
T COG2229 152 SVPVIEIDATEG 163 (187)
T ss_pred CCceeeeecccc
Confidence 468899999854
No 456
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.42 E-value=5.2e-12 Score=133.34 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=79.2
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-.|+++|..++|||||+.+++... ... ++ ..|+.... ......++....++||||+|..
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~--F~~-----------~y-------~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e 72 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDC--YPE-----------TY-------VPTVFENY-TAGLETEEQRVELSLWDTSGSP 72 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCC--CCC-----------Cc-------CCceeeee-EEEEEECCEEEEEEEEeCCCch
Confidence 368999999999999999986321 100 01 11332211 1122223456889999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHH-HHh--hcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWF-QSQ--KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~-~~~--~~~~p~iiviNK~D~~ 142 (1021)
+|......+++.+|++|+|+|.++....+. ...|. .+. ..+.|+++|.||+|+.
T Consensus 73 ~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 73 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred hhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 999888899999999999999998655543 23443 333 2368999999999984
No 457
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.42 E-value=2e-12 Score=131.79 Aligned_cols=111 Identities=15% Similarity=0.107 Sum_probs=75.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeee-EEEeecccCceeEEEEcCCCCCC
Q psy5021 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV-SIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 11 i~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~-~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
|+|+|..|+|||||+++++...- .. .+. .|+..... .+.+ ++..+.+.+|||||+.+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~--~~-----------~~~-------~~~~~~~~~~~~~--~~~~~~~~i~Dt~G~~~ 58 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF--PE-----------DYV-------PTVFENYSADVEV--DGKPVELGLWDTAGQED 58 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC--CC-----------CCC-------CcEEeeeeEEEEE--CCEEEEEEEEECCCCcc
Confidence 58999999999999999974221 10 000 11211111 1122 23457899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHH-HHHh--hcCCCEEEEEeCcCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQTE-TVW-FQSQ--KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~-~~~~--~~~~p~iiviNK~D~~~ 143 (1021)
|.......++.+|++|+|+|.++.-..+.. ..| .... ..++|+++++||+|+..
T Consensus 59 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 59 YDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE 116 (174)
T ss_pred cchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence 988888889999999999999875333222 223 2332 24799999999999853
No 458
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.42 E-value=1.2e-12 Score=136.29 Aligned_cols=155 Identities=21% Similarity=0.130 Sum_probs=97.9
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~ 731 (1021)
+.++|..++|||||+++++...... .....+.+.....+...+ ..+.||||||+.+|....
T Consensus 2 v~vvG~~~vGKTsll~~~~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 64 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDTFEP-----------------KYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMR 64 (198)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCc-----------------cCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHH
Confidence 4578999999999999998743110 000111112222344444 567899999999998877
Q ss_pred HHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
..++..+|++|+|+|+++....+ ...++..+.. .++| +|+++||+|+.+...... ..+..+... ..+ .
T Consensus 65 ~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~~v~--~~~~~~~~~-~~~---~ 137 (198)
T cd04147 65 KLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVP-IVVVGNKADSLEEERQVP--AKDALSTVE-LDW---N 137 (198)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEcccccccccccc--HHHHHHHHH-hhc---C
Confidence 78889999999999998754322 2222222222 3677 899999999865211111 111111111 111 2
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.+++++||++|. |+++++++|.+.+.
T Consensus 138 ~~~~~~Sa~~g~-----------gv~~l~~~l~~~~~ 163 (198)
T cd04147 138 CGFVETSAKDNE-----------NVLEVFKELLRQAN 163 (198)
T ss_pred CcEEEecCCCCC-----------CHHHHHHHHHHHhh
Confidence 468999999883 88999999887553
No 459
>PRK11058 GTPase HflX; Provisional
Probab=99.42 E-value=8.8e-13 Score=151.37 Aligned_cols=151 Identities=19% Similarity=0.160 Sum_probs=99.9
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC-eEEEEEecCChhhh----
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN-KHYAHVDCPGHADY---- 727 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-~~i~liDtpG~~~~---- 727 (1021)
.++++|.+|+|||||+|+|++..... ....+.|.+.....+...+ ..+.||||||+.+.
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt~~~~~v----------------~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~ 262 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRITEARVYA----------------ADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHD 262 (426)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceee----------------ccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHH
Confidence 56789999999999999999854221 1122456666666666555 38899999997432
Q ss_pred ----HHHHHHHhhhCCEEEEEEECCCCCcHHHH----HHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 728 ----IKNMITGAAQMDGAILVCSAVDGPMPQTR----EHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 728 ----~~~~~~~~~~aD~ailVvDa~~g~~~qt~----e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
...+...+..||++|+|+|+++....... +.+..+...++| +|+|+||+|+.+... ... ... .
T Consensus 263 lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~p-vIiV~NKiDL~~~~~--~~~----~~~--~ 333 (426)
T PRK11058 263 LVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIP-TLLVMNKIDMLDDFE--PRI----DRD--E 333 (426)
T ss_pred HHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCC-EEEEEEcccCCCchh--HHH----HHH--h
Confidence 23355667899999999999986543332 233333334677 889999999975211 111 100 1
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.++ ..++++||++| .|++.|+++|.+.+.
T Consensus 334 ~~~----~~~v~ISAktG-----------~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 334 ENK----PIRVWLSAQTG-----------AGIPLLFQALTERLS 362 (426)
T ss_pred cCC----CceEEEeCCCC-----------CCHHHHHHHHHHHhh
Confidence 121 12578999988 389999999987653
No 460
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.42 E-value=1.3e-12 Score=133.04 Aligned_cols=154 Identities=16% Similarity=0.123 Sum_probs=97.9
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHHH
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~ 732 (1021)
.++|..++|||||++++.+..... +....+ .+.....+..++ ..+.+|||||+++|.....
T Consensus 2 ~i~G~~~vGKTsli~~~~~~~~~~----------------~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 64 (174)
T smart00174 2 VVVGDGAVGKTCLLISYTTNAFPE----------------DYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDYDRLRP 64 (174)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCC----------------CCCCcE-EeeeeEEEEECCEEEEEEEEECCCCcccchhch
Confidence 467889999999999998743110 000011 111111223333 3578999999999988777
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HHHHHHhhhc
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EMEIRELLTE 799 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~~~l~~ 799 (1021)
..++.+|++|+|+|.++....+.. .++..+... ++| +|+|+||+|+.......+.+ .++...+.+.
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTP-IILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR 143 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence 788999999999999874332222 233333332 677 99999999987522211111 1233445555
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+. .+++++||++|. |++++++.+.+.
T Consensus 144 ~~~----~~~~e~Sa~~~~-----------~v~~lf~~l~~~ 170 (174)
T smart00174 144 IGA----VKYLECSALTQE-----------GVREVFEEAIRA 170 (174)
T ss_pred cCC----cEEEEecCCCCC-----------CHHHHHHHHHHH
Confidence 542 378999999873 889999888653
No 461
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.41 E-value=1.8e-13 Score=120.81 Aligned_cols=72 Identities=46% Similarity=0.818 Sum_probs=67.8
Q ss_pred eeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 591 ILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 591 llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
||||||+++|.||++++|+|+++|++|||.|.+++..++.+.|+|.+|++++++|.++|+++|.|.+.+...
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~ 72 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLRSATQGRATWSME 72 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccCCcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEE
Confidence 689999999999999999999999999999999998777899999999999999999999999999877543
No 462
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.41 E-value=1.6e-12 Score=128.12 Aligned_cols=112 Identities=22% Similarity=0.233 Sum_probs=79.7
Q ss_pred EEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCcHH
Q psy5021 13 IIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTI 92 (1021)
Q Consensus 13 iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~ 92 (1021)
++|+.|+|||||+++|....... ..+..|. ...........+....+.+|||||+.++..
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-------------------~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 60 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-------------------EEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRS 60 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-------------------cccccch-hheeeEEEEECCEEEEEEEEecCChHHHHh
Confidence 58999999999999997433210 0111122 222222222223367899999999999998
Q ss_pred HHHHHhhccCeEEEEEeCCCCCchhHHHHH-----HHHhhcCCCEEEEEeCcCCCCC
Q psy5021 93 EVERSLRVLDGAVIIICASSGIQPQTETVW-----FQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 93 ~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-----~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
.....++.+|++++|+|++.+........| ......++|+++++||+|+...
T Consensus 61 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 61 LRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 888999999999999999987665555544 3345678999999999998643
No 463
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.41 E-value=1.9e-12 Score=133.66 Aligned_cols=155 Identities=17% Similarity=0.127 Sum_probs=98.5
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.+.++|..++|||||+++|++.... .......|.+.......+......+.+|||||+++|...+.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~ 67 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFS--------------ESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNN 67 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHH
Confidence 3567889999999999999974311 01122223333333333322234568999999999998888
Q ss_pred HHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
..++.+|++|+|+|+++..... ...++..+... ..| +|+++||+|+.+...... .+...+....+ ++
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~v~~---~~~~~~~~~~~-----~~ 138 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVI-KVIVANKSDLVNNKVVDS---NIAKSFCDSLN-----IP 138 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCCCcccccCCH---HHHHHHHHHcC-----Ce
Confidence 8899999999999998744322 22333333332 345 899999999875221111 12222333333 47
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++||+++. +++++++.|.+.
T Consensus 139 ~~evSa~~~~-----------~i~~~f~~l~~~ 160 (188)
T cd04125 139 FFETSAKQSI-----------NVEEAFILLVKL 160 (188)
T ss_pred EEEEeCCCCC-----------CHHHHHHHHHHH
Confidence 8999999873 777777776553
No 464
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.41 E-value=1.2e-12 Score=135.11 Aligned_cols=157 Identities=15% Similarity=0.103 Sum_probs=98.3
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC---CeEEEEEecCChhhhHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE---NKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~---~~~i~liDtpG~~~~~~ 729 (1021)
.+.++|..++|||||+++|.+.... .+....+..+... .+... ...+.+|||||+++|..
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~----------------~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~ 64 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP----------------EEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDR 64 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC----------------CCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHH
Confidence 3567899999999999999974311 0001111111111 12222 34678999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHH-H-HHHHHHH--cCCCeEEEEEeeccccchhhH-HHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTR-E-HILLARQ--VGVPNIVVFLNKADCVQDKEL-LDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~-e-~l~~~~~--~~ip~iIvviNK~Dl~~~~~~-~~~~~~~~~~~l~~~~~~~ 804 (1021)
....+++.+|++++|+|+++....+.. . ++..... .++| +|+|+||+|+...... ......+..++.+..+.
T Consensus 65 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-- 141 (187)
T cd04132 65 LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA-- 141 (187)
T ss_pred HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC--
Confidence 888888999999999999875433332 2 2222222 2577 9999999998652100 00012334444444442
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++|. ++.++++.+.+.+
T Consensus 142 --~~~~e~Sa~~~~-----------~v~~~f~~l~~~~ 166 (187)
T cd04132 142 --FAYLECSAKTME-----------NVEEVFDTAIEEA 166 (187)
T ss_pred --cEEEEccCCCCC-----------CHHHHHHHHHHHH
Confidence 278999999874 7777777776543
No 465
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.41 E-value=4.6e-12 Score=129.26 Aligned_cols=112 Identities=15% Similarity=0.117 Sum_probs=78.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|..++|||||+.++....- . .++ -.|+.... ......++....+++|||||+..
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f--~-----------~~~-------~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~ 61 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY--P-----------ETY-------VPTVFENY-TASFEIDEQRIELSLWDTSGSPY 61 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--C-----------CCc-------CCceEEEE-EEEEEECCEEEEEEEEECCCchh
Confidence 699999999999999999963211 0 011 11222211 11122234468899999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHH-HHhh--cCCCEEEEEeCcCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWF-QSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~-~~~~--~~~p~iiviNK~D~~ 142 (1021)
|......+++.+|++|+|+|.++....+. ...|. .+.. .+.|+++|.||+|+.
T Consensus 62 ~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 62 YDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred hhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 98888889999999999999987655444 24453 2322 478999999999985
No 466
>PLN03108 Rab family protein; Provisional
Probab=99.41 E-value=2e-12 Score=135.77 Aligned_cols=156 Identities=16% Similarity=0.132 Sum_probs=100.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.+.++|.+++|||||+++|++.... .......|.+.......+......+.+|||||+++|...+
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~--------------~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~ 72 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ--------------PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSIT 72 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--------------CCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH
Confidence 56778899999999999999874311 1111222333333333333223457899999999999888
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
...++.+|++|+|+|+++....+. .+++..+... ++| +++++||+|+.+.... ..++..++++..+ +
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~ 143 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAV---STEEGEQFAKEHG-----L 143 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCccccCC---CHHHHHHHHHHcC-----C
Confidence 888999999999999987443332 2333333322 566 8999999998652111 1123344444443 4
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++||+++. +++++++++.+.
T Consensus 144 ~~~e~Sa~~~~-----------~v~e~f~~l~~~ 166 (210)
T PLN03108 144 IFMEASAKTAQ-----------NVEEAFIKTAAK 166 (210)
T ss_pred EEEEEeCCCCC-----------CHHHHHHHHHHH
Confidence 79999999873 777777666543
No 467
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.41 E-value=4.8e-12 Score=128.84 Aligned_cols=111 Identities=14% Similarity=0.070 Sum_probs=75.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCcee-eeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITI-TSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi-~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
+++++|..|+|||||+.+++...- .. .+. .|+ ..-...+.. ++....+.+|||||+.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~--~~-----------~~~-------~t~~~~~~~~~~~--~~~~~~~~i~Dt~G~~ 59 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY--PT-----------EYV-------PTAFDNFSVVVLV--DGKPVRLQLCDTAGQD 59 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC-----------CCC-------CceeeeeeEEEEE--CCEEEEEEEEECCCCh
Confidence 589999999999999999864211 00 000 011 111111222 2335788999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHH--HHHHHHhh--cCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTE--TVWFQSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~--~~~~~~~~--~~~p~iiviNK~D~~ 142 (1021)
+|......+++.+|++|+|+|.++....+.. ..+..... .++|+++++||+|+.
T Consensus 60 ~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 60 EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred hhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhc
Confidence 9988888889999999999999876443332 23333333 468999999999985
No 468
>KOG0394|consensus
Probab=99.40 E-value=5.5e-13 Score=127.80 Aligned_cols=156 Identities=16% Similarity=0.108 Sum_probs=105.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeE--EEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKH--YAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~--i~liDtpG~~~~~~ 729 (1021)
+.+-+.|.+++|||+|+|+++... +......+.|. +.....+..+++. +.+|||+|+++|.+
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~k--------------F~~qykaTIga--dFltKev~Vd~~~vtlQiWDTAGQERFqs 73 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKK--------------FSQQYKATIGA--DFLTKEVQVDDRSVTLQIWDTAGQERFQS 73 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH--------------HHHHhccccch--hheeeEEEEcCeEEEEEEEecccHHHhhh
Confidence 466677889999999999999743 11122223333 4444444444554 45799999999998
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHH--HHHHc------CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHIL--LARQV------GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~--~~~~~------~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
.-...++.||+++||.|.+........+.|. .+... ..| +||+.||+|+.+.+.+. ....+.+..++..|
T Consensus 74 Lg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FP-FVilGNKiD~~~~~~r~-VS~~~Aq~WC~s~g 151 (210)
T KOG0394|consen 74 LGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFP-FVILGNKIDVDGGKSRQ-VSEKKAQTWCKSKG 151 (210)
T ss_pred cccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCccc-EEEEcccccCCCCccce-eeHHHHHHHHHhcC
Confidence 8888889999999999998865555554442 23322 357 99999999986532221 12345566776655
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++|++.+||+.+. |+...++.+..
T Consensus 152 ----nipyfEtSAK~~~-----------NV~~AFe~ia~ 175 (210)
T KOG0394|consen 152 ----NIPYFETSAKEAT-----------NVDEAFEEIAR 175 (210)
T ss_pred ----CceeEEecccccc-----------cHHHHHHHHHH
Confidence 6899999999763 66666665543
No 469
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.40 E-value=1.5e-12 Score=132.74 Aligned_cols=154 Identities=18% Similarity=0.088 Sum_probs=98.0
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~~ 731 (1021)
..++|.+++|||||++++.+..... .. . ....+.....+..++ ..+.+|||||+.+|....
T Consensus 3 i~i~G~~~~GKTsl~~~~~~~~~~~--------------~~--~-~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 65 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYANDAFPE--------------EY--V-PTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR 65 (174)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCC--------------CC--C-CceeeeeEEEEEECCEEEEEEEEeCCCcccccccc
Confidence 5678899999999999998743110 00 0 001111112233333 446799999999998877
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHH--cCCCeEEEEEeeccccchhhHHHHH---------HHHHHHhhh
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQTR--EHILLARQ--VGVPNIVVFLNKADCVQDKELLDLV---------EMEIRELLT 798 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~~~l~ 798 (1021)
...+..+|++++|+|.++....+.. .++..+.. .++| +++++||+|+.+.......+ .++...+++
T Consensus 66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 144 (174)
T cd04135 66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-YLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK 144 (174)
T ss_pred cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 7778899999999999875443322 22333333 3677 88999999986532211100 123344444
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.++. .+++++||++|. |++++++.+..
T Consensus 145 ~~~~----~~~~e~Sa~~~~-----------gi~~~f~~~~~ 171 (174)
T cd04135 145 EIGA----HCYVECSALTQK-----------GLKTVFDEAIL 171 (174)
T ss_pred HcCC----CEEEEecCCcCC-----------CHHHHHHHHHH
Confidence 4443 368999999884 88999988764
No 470
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.40 E-value=7.8e-13 Score=133.99 Aligned_cols=160 Identities=18% Similarity=0.042 Sum_probs=100.1
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+.++|.+++|||||++++++..... .....+.|.........+......+.+||++|.+.|...
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~-------------~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 70 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSL-------------NAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILL 70 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCc-------------ccCCCccCcceEEEEEEECCeEEEEEEEecCCccccccc
Confidence 3456788999999999999999743110 111122222222222233222256788999999999887
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ-VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~-~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
+..++..+|++++|+|+++....+. .+++..... .++| +++|+||+|+.+..... ..+..++.+.+++. .
T Consensus 71 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~~---~~~~~~~~~~~~~~----~ 142 (169)
T cd01892 71 NDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIP-CLFVAAKADLDEQQQRY---EVQPDEFCRKLGLP----P 142 (169)
T ss_pred chhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCe-EEEEEEccccccccccc---ccCHHHHHHHcCCC----C
Confidence 7888899999999999987432221 233332221 2577 99999999986522111 11223344444431 3
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++||+++. |++.+++.|.+.+
T Consensus 143 ~~~~Sa~~~~-----------~v~~lf~~l~~~~ 165 (169)
T cd01892 143 PLHFSSKLGD-----------SSNELFTKLATAA 165 (169)
T ss_pred CEEEEeccCc-----------cHHHHHHHHHHHh
Confidence 5889999873 7888888887643
No 471
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.40 E-value=2.1e-12 Score=135.62 Aligned_cols=156 Identities=12% Similarity=0.061 Sum_probs=98.9
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+.++|..++|||||+++++..... ....+.|. ...........+.+|||||+++|...+..
T Consensus 3 IvivG~~~vGKTSLi~r~~~~~f~---------------~~~~Tig~----~~~~~~~~~~~l~iwDt~G~e~~~~l~~~ 63 (220)
T cd04126 3 VVLLGDMNVGKTSLLHRYMERRFK---------------DTVSTVGG----AFYLKQWGPYNISIWDTAGREQFHGLGSM 63 (220)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC---------------CCCCccce----EEEEEEeeEEEEEEEeCCCcccchhhHHH
Confidence 467889999999999999874310 01111122 12222334567899999999999988888
Q ss_pred HhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeeccccchhh----------------HHHHHHHHH
Q psy5021 734 GAAQMDGAILVCSAVDGPMPQT-REHILLARQ---VGVPNIVVFLNKADCVQDKE----------------LLDLVEMEI 793 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~----------------~~~~~~~~~ 793 (1021)
+++.+|++|+|+|+++....+. .++|..+.. .++| +|+|.||+|+.++.. ...-..++.
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~ 142 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL-FAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDA 142 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccccccccccccccccccccCCHHHH
Confidence 9999999999999997543333 233433333 2466 899999999875100 011112233
Q ss_pred HHhhhcccc--------C-CCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 794 RELLTEYDF--------D-GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 794 ~~~l~~~~~--------~-~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..+.+..+. . ...++++++||++|. |++++++.+.+
T Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~-----------~V~elf~~i~~ 187 (220)
T cd04126 143 KAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY-----------NVDELFEYLFN 187 (220)
T ss_pred HHHHHHhCccccccccccccccceEEEeeCCCCC-----------CHHHHHHHHHH
Confidence 344443320 0 012579999999884 77777777765
No 472
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.39 E-value=1.3e-12 Score=131.92 Aligned_cols=154 Identities=18% Similarity=0.192 Sum_probs=94.3
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh-HHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY-IKNMI 732 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~-~~~~~ 732 (1021)
+.++|.+++|||||+++++..... ... ....+ +.......++.....+.+|||||+.++ ...+.
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~~~-~~~-------------~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 66 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFI-GEY-------------DPNLE-SLYSRQVTIDGEQVSLEILDTAGQQQADTEQLE 66 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCccc-ccc-------------CCChH-HhceEEEEECCEEEEEEEEECCCCcccccchHH
Confidence 457889999999999999863210 000 00000 111112222222345789999999863 45567
Q ss_pred HHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQT-REHILLARQ-----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~-----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
.+++.+|++|+|+|+++....+. ..++..+.. .++| +|+|+||+|+.+.... . .++..++.+..+
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v-~--~~~~~~~~~~~~----- 137 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIP-VILVGNKADLLHYRQV-S--TEEGEKLASELG----- 137 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHhCcc-C--HHHHHHHHHHcC-----
Confidence 77899999999999988544332 333333333 2677 8999999998642111 1 122333333333
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+++++||+++. .+++++++.|.+.
T Consensus 138 ~~~~e~Sa~~~~----------~~v~~~f~~l~~~ 162 (165)
T cd04146 138 CLFFEVSAAEDY----------DGVHSVFHELCRE 162 (165)
T ss_pred CEEEEeCCCCCc----------hhHHHHHHHHHHH
Confidence 478999999762 2788898888653
No 473
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.39 E-value=5.3e-12 Score=127.43 Aligned_cols=155 Identities=25% Similarity=0.327 Sum_probs=101.9
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh-------
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD------- 726 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~------- 726 (1021)
++.+|.+++|||||++.|++.... ...+...+.|........ . ..+.+|||||+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~--------------~~~~~~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~~~ 64 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL--------------ARTSKTPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSKEV 64 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce--------------eeecCCCCcceeEEEEEc--c-CeEEEecCCCccccccCHHH
Confidence 478899999999999999953211 111223344554433332 2 3889999999533
Q ss_pred ---hHHHHHHHh---hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 727 ---YIKNMITGA---AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 727 ---~~~~~~~~~---~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
+...+..++ ...+++++++|+.........+.+..+...+.| +++++||+|+....+ .......+...++..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~-vi~v~nK~D~~~~~~-~~~~~~~~~~~l~~~ 142 (170)
T cd01876 65 KEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIP-FLVVLTKADKLKKSE-LAKALKEIKKELKLF 142 (170)
T ss_pred HHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCC-EEEEEEchhcCChHH-HHHHHHHHHHHHHhc
Confidence 333333333 356889999999887666777777888888888 889999999875322 223333444444321
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
....+++++||+++ .++.++++.|.++
T Consensus 143 ---~~~~~~~~~Sa~~~-----------~~~~~l~~~l~~~ 169 (170)
T cd01876 143 ---EIDPPIILFSSLKG-----------QGIDELRALIEKW 169 (170)
T ss_pred ---cCCCceEEEecCCC-----------CCHHHHHHHHHHh
Confidence 12357899999987 3788898888653
No 474
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.39 E-value=3.1e-13 Score=120.29 Aligned_cols=73 Identities=41% Similarity=0.709 Sum_probs=67.4
Q ss_pred ceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeec-CCeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 590 YILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDH-ENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 590 ~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~-~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+||||||+++|.+|++++|+|+++|++|||+|.++... ++++.|+|.+|++++++|..+|+++|+|.+.+..+
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~ 74 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSME 74 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEE
Confidence 58999999999999999999999999999999999998 78999999999999999999999999999877654
No 475
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.39 E-value=2.6e-12 Score=133.93 Aligned_cols=117 Identities=18% Similarity=0.267 Sum_probs=79.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
++|.++|+.|+|||||+.+|...... . ++ .++..+...+.....+.+..+.+||||||.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~--~--------t~-----------~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~ 59 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYR--S--------TV-----------TSIEPNVATFILNSEGKGKKFRLVDVPGHP 59 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCC--C--------cc-----------CcEeecceEEEeecCCCCceEEEEECCCCH
Confidence 47999999999999999999642110 0 00 011122222222211236789999999999
Q ss_pred CcHHHHHHHhhcc-CeEEEEEeCCCCCc--hhHHHHHHHH----h--hcCCCEEEEEeCcCCCCCCH
Q psy5021 89 DFTIEVERSLRVL-DGAVIIICASSGIQ--PQTETVWFQS----Q--KYKVPKMIFVNKMDRIGANY 146 (1021)
Q Consensus 89 ~f~~~~~~~l~~~-D~~ilvvda~~g~~--~~t~~~~~~~----~--~~~~p~iiviNK~D~~~~~~ 146 (1021)
+|...+..+++.+ +++|+|+|+..... ..+.+.|..+ . ..++|+++++||+|+..+..
T Consensus 60 ~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~ 126 (203)
T cd04105 60 KLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP 126 (203)
T ss_pred HHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence 9999999999998 99999999998631 1222222221 1 24899999999999987653
No 476
>KOG0073|consensus
Probab=99.39 E-value=7.9e-12 Score=117.62 Aligned_cols=111 Identities=20% Similarity=0.249 Sum_probs=84.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-.|-|+|..||||||+.++|+....... -.|.....-++.++ ++.+++||..|+.
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~~~i---------------------~pt~gf~Iktl~~~----~~~L~iwDvGGq~ 71 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDTDTI---------------------SPTLGFQIKTLEYK----GYTLNIWDVGGQK 71 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCcccc---------------------CCccceeeEEEEec----ceEEEEEEcCCcc
Confidence 3478999999999999999963221100 12455555577888 9999999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHH----HHhhcCCCEEEEEeCcCCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWF----QSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~----~~~~~~~p~iiviNK~D~~~~ 144 (1021)
.+..-+..++..+|+.|+|+|.++.. ..++...+. .-+..+.|++++.||.|++++
T Consensus 72 ~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 72 TLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA 132 (185)
T ss_pred hhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc
Confidence 99999999999999999999998753 222333333 334567899999999999754
No 477
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.39 E-value=3.3e-12 Score=135.12 Aligned_cols=110 Identities=12% Similarity=0.144 Sum_probs=69.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCcee--eeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITI--TSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi--~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+|+++|..|+|||||+++++. +.... ..+ ..|+ +....++.+ ++....+++|||||+
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~--~~~~~----------~~~-------~~t~~~~~~~~~i~~--~~~~~~l~i~Dt~G~ 60 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTS--GEYDD----------HAY-------DASGDDDTYERTVSV--DGEESTLVVIDHWEQ 60 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhc--CCcCc----------cCc-------CCCccccceEEEEEE--CCEEEEEEEEeCCCc
Confidence 689999999999999999962 11110 000 0011 011111222 223678999999999
Q ss_pred CCcHHHHHHHhh-ccCeEEEEEeCCCCCchhH-HHHHHHHhh----cCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLR-VLDGAVIIICASSGIQPQT-ETVWFQSQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~-~~D~~ilvvda~~g~~~~t-~~~~~~~~~----~~~p~iiviNK~D~~ 142 (1021)
.++. ....++ .+|++++|+|+++...... ...+..+.. .++|+++|+||+|+.
T Consensus 61 ~~~~--~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 61 EMWT--EDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred chHH--HhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 8432 234556 8999999999998643332 222333332 478999999999985
No 478
>COG2262 HflX GTPases [General function prediction only]
Probab=99.39 E-value=1.5e-12 Score=141.60 Aligned_cols=151 Identities=20% Similarity=0.199 Sum_probs=105.5
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-CeEEEEEecCChhhh---
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-NKHYAHVDCPGHADY--- 727 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-~~~i~liDtpG~~~~--- 727 (1021)
.+++.+|++|+|||||+|+|++......+..| .|.+.+...+... ++.+.+.||-|+-+-
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LF----------------ATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~ 256 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQLF----------------ATLDPTTRRIELGDGRKVLLTDTVGFIRDLPH 256 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeecccccc----------------ccccCceeEEEeCCCceEEEecCccCcccCCh
Confidence 56788999999999999999976544333333 2667777777776 589999999996553
Q ss_pred -----HHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 728 -----IKNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 728 -----~~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
.+.++.....||++++|||++++.. .+.......+..+ .+| +|+|.||+|++.+... ...+...
T Consensus 257 ~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p-~i~v~NKiD~~~~~~~----~~~~~~~-- 329 (411)
T COG2262 257 PLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIP-IILVLNKIDLLEDEEI----LAELERG-- 329 (411)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCC-EEEEEecccccCchhh----hhhhhhc--
Confidence 3445666789999999999998643 2333333444444 456 9999999998864321 1111111
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
. . ..+++||++|. |++.|.+.|...++
T Consensus 330 ---~---~-~~v~iSA~~~~-----------gl~~L~~~i~~~l~ 356 (411)
T COG2262 330 ---S---P-NPVFISAKTGE-----------GLDLLRERIIELLS 356 (411)
T ss_pred ---C---C-CeEEEEeccCc-----------CHHHHHHHHHHHhh
Confidence 1 1 36889999884 88999999887664
No 479
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.38 E-value=3.5e-12 Score=128.36 Aligned_cols=154 Identities=20% Similarity=0.155 Sum_probs=97.6
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
..+.+|.+++|||||+++|+....... .....+... .....+......+.+|||||+.+|.....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~--------------~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 66 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVED--------------YEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccc--------------cCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHH
Confidence 457889999999999999996431110 000001011 01112222335688999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 733 TGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
..++.+|++++|+|.++... ....+++..... .++| +++|+||+|+....... ..+...+.+.++ .
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~~~~---~~~~~~~~~~~~-----~ 137 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQVS---SEEAANLARQWG-----V 137 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEccccccccccC---HHHHHHHHHHhC-----C
Confidence 99999999999999876432 112233332222 4678 99999999987511111 112223333333 4
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++++||+++ +|++++++.|.+.
T Consensus 138 ~~~~~Sa~~~-----------~gi~~l~~~l~~~ 160 (164)
T cd04139 138 PYVETSAKTR-----------QNVEKAFYDLVRE 160 (164)
T ss_pred eEEEeeCCCC-----------CCHHHHHHHHHHH
Confidence 7899999988 4888898888653
No 480
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.38 E-value=3.4e-12 Score=134.02 Aligned_cols=156 Identities=16% Similarity=0.147 Sum_probs=100.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC---CeEEEEEecCChhhhH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE---NKHYAHVDCPGHADYI 728 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~---~~~i~liDtpG~~~~~ 728 (1021)
+.+.++|.+++|||||+++|++..... .....++.+.....+... ...+.+|||||+++|.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~----------------~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~ 66 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAE----------------VSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR 66 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH
Confidence 456788999999999999999743110 001122233333333332 2467899999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.....+++.+|++++|+|.++..... ..+++..+... ..+.++|+.||+|+.+..... .++...+.+..+
T Consensus 67 ~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~---~~~~~~~~~~~~--- 140 (211)
T cd04111 67 SITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVT---REEAEKLAKDLG--- 140 (211)
T ss_pred HHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccC---HHHHHHHHHHhC---
Confidence 88888899999999999998743322 23333333322 223378899999987522111 122334444443
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| +|++++++.|.+.+
T Consensus 141 --~~~~e~Sak~g-----------~~v~e~f~~l~~~~ 165 (211)
T cd04111 141 --MKYIETSARTG-----------DNVEEAFELLTQEI 165 (211)
T ss_pred --CEEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 57999999987 37888888887644
No 481
>KOG0394|consensus
Probab=99.38 E-value=4.8e-12 Score=121.43 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=94.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
..+..|.|+|.+|+|||||.+++.+. +..+....||.....+-.+..++....+.+|||+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~--------------------kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTA 66 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNK--------------------KFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTA 66 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHH--------------------HHHHHhccccchhheeeEEEEcCeEEEEEEEecc
Confidence 45678999999999999999999743 2234455677666665566556667889999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHH--hh------cCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQS--QK------YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~--~~------~~~p~iiviNK~D~~~ 143 (1021)
|++.|.+.-...+|.+|.+++|.|....-.......|+.- .+ ..-|+|++.||+|..+
T Consensus 67 GQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 67 GQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred cHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 9999999998999999999999999987777777777543 11 3579999999999864
No 482
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.38 E-value=2e-12 Score=132.14 Aligned_cols=156 Identities=12% Similarity=0.065 Sum_probs=101.7
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+..+|..++|||||+.++....- .....++.+... ...+..++ ..+.+|||+|+++|..
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f--------------~~~~~pT~~~~~---~~~~~~~~~~~~l~iwDtaG~e~~~~ 68 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF--------------PENYVPTVFENY---TASFEIDTQRIELSLWDTSGSPYYDN 68 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC--------------CCccCCceeeee---EEEEEECCEEEEEEEEECCCchhhHh
Confidence 4567888999999999999987431 001111112111 12233333 4678999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhHH---------HHHHHHHHHh
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKELL---------DLVEMEIREL 796 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~---------~~~~~~~~~~ 796 (1021)
....+++.+|++|+|+|.++....+. ..++..+... +.| +|+|.||+|+.+..... .-..++..++
T Consensus 69 ~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (182)
T cd04172 69 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANM 147 (182)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHH
Confidence 88888999999999999987544333 2333444433 466 89999999986421000 0112345566
Q ss_pred hhccccCCCceEEEEecccccccCCCCCccCcch-HHHHHHhhhc
Q psy5021 797 LTEYDFDGENTKIVIGSALLALEGKDDNQLGTTS-IKKLLDVLDS 840 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~-i~~Ll~~l~~ 840 (1021)
.+.++. .+++.+||++|. + ++++++.+..
T Consensus 148 a~~~~~----~~~~E~SAk~~~-----------n~v~~~F~~~~~ 177 (182)
T cd04172 148 AKQIGA----ATYIECSALQSE-----------NSVRDIFHVATL 177 (182)
T ss_pred HHHcCC----CEEEECCcCCCC-----------CCHHHHHHHHHH
Confidence 666552 379999999884 5 8888877654
No 483
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.38 E-value=2.7e-12 Score=135.46 Aligned_cols=158 Identities=15% Similarity=0.046 Sum_probs=102.3
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|..++|||+|+.++++..-. .....+.|... ...+..++ ..+.||||+|+++|.
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~--------------~~y~pTi~~~~---~~~i~~~~~~v~l~iwDTaG~e~~~ 75 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYP--------------ETYVPTVFENY---TAGLETEEQRVELSLWDTSGSPYYD 75 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCC--------------CCcCCceeeee---EEEEEECCEEEEEEEEeCCCchhhH
Confidence 456778899999999999999874311 11111112211 11233333 567899999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhH---------HHHHHHHHHH
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKEL---------LDLVEMEIRE 795 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~---------~~~~~~~~~~ 795 (1021)
..+..+++.||++|+|+|.++....+. ..++..+... +.| +|+|.||+|+.+.... ..-..++..+
T Consensus 76 ~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~ 154 (232)
T cd04174 76 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTR-ILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCA 154 (232)
T ss_pred HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccchhhhhccccCCcCCHHHHHH
Confidence 888889999999999999987554432 2344444432 566 8999999998531100 0011235566
Q ss_pred hhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 796 LLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 796 ~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+.+.++. .+++.+||++|. .+++++++.+..
T Consensus 155 ~a~~~~~----~~~~EtSAktg~----------~~V~e~F~~~~~ 185 (232)
T cd04174 155 LAKQLGA----EVYLECSAFTSE----------KSIHSIFRSASL 185 (232)
T ss_pred HHHHcCC----CEEEEccCCcCC----------cCHHHHHHHHHH
Confidence 6666653 268999999872 157777777654
No 484
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.38 E-value=6.5e-13 Score=115.21 Aligned_cols=70 Identities=24% Similarity=0.457 Sum_probs=66.1
Q ss_pred eeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecC-CeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHE-NFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 593 EP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
||||+++|.||++|+|+|+++|++|||+|.+.+..+ +.+.|+|.+|++++++|..+||++|.|.+.+...
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~ 71 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHV 71 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEE
Confidence 899999999999999999999999999999999876 6799999999999999999999999999987653
No 485
>KOG0078|consensus
Probab=99.38 E-value=6.1e-12 Score=124.93 Aligned_cols=120 Identities=20% Similarity=0.167 Sum_probs=86.9
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+..-.|.++|.+++|||+++.++...+-... +.. .|-|+...-++.. ++....+.+||
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~-------------~~s-----TiGIDFk~kti~l--~g~~i~lQiWD 67 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTS-------------FIS-----TIGIDFKIKTIEL--DGKKIKLQIWD 67 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCC-------------ccc-----eEEEEEEEEEEEe--CCeEEEEEEEE
Confidence 567788899999999999999999863322111 100 1111211112222 34478899999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHh----hcCCCEEEEEeCcCCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQ----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~----~~~~p~iiviNK~D~~~ 143 (1021)
|.|+..|...+..+++.|+++++|+|.+...+......|.... ..++|.++|.||+|+..
T Consensus 68 taGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 68 TAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred cccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc
Confidence 9999999999999999999999999999877666665564332 24789999999999853
No 486
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.38 E-value=4e-12 Score=147.00 Aligned_cols=109 Identities=21% Similarity=0.331 Sum_probs=83.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
.||++|.+|+|||||+|+|. |+-.+.|+. .|.|++.....+.++ ++.+.++|.||..+
T Consensus 5 ~valvGNPNvGKTtlFN~LT---G~~q~VgNw---------------pGvTVEkkeg~~~~~----~~~i~ivDLPG~YS 62 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALT---GANQKVGNW---------------PGVTVEKKEGKLKYK----GHEIEIVDLPGTYS 62 (653)
T ss_pred eEEEecCCCccHHHHHHHHh---ccCceecCC---------------CCeeEEEEEEEEEec----CceEEEEeCCCcCC
Confidence 49999999999999999994 443344433 489999999999999 89999999999865
Q ss_pred cH-----HH-HHHHh--hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 90 FT-----IE-VERSL--RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 90 f~-----~~-~~~~l--~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+. .. +.+++ ...|.+|-|+||++- .....+--|+.+.++|+++++|++|..
T Consensus 63 L~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A 121 (653)
T COG0370 63 LTAYSEDEKVARDFLLEGKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEA 121 (653)
T ss_pred CCCCCchHHHHHHHHhcCCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhH
Confidence 53 12 33444 356999999999862 223333356678899999999999964
No 487
>KOG0080|consensus
Probab=99.37 E-value=1.4e-12 Score=121.51 Aligned_cols=149 Identities=15% Similarity=0.104 Sum_probs=99.7
Q ss_pred cCCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCC
Q psy5021 644 GYSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPG 723 (1021)
Q Consensus 644 ~~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG 723 (1021)
+|...++.+ ++|-+++|||+|+-+++... +...+-.+.|+........++.+..++.+|||+|
T Consensus 7 ~~~~t~KiL---lIGeSGVGKSSLllrFv~~~--------------fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG 69 (209)
T KOG0080|consen 7 GYDTTFKIL---LIGESGVGKSSLLLRFVSNT--------------FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG 69 (209)
T ss_pred CcceeEEEE---EEccCCccHHHHHHHHHhcc--------------cCccCCceeeeeEEEEEEEEcCceEEEEEEeccc
Confidence 344444444 45569999999999999743 2222233456666666666666667889999999
Q ss_pred hhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHH-HHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 724 HADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHIL-LARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 724 ~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~-~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
+++|...+.++++.|.++|+|.|.+........++|. .+... .+- .++|.||+|.-+.. .--+++=..+.+
T Consensus 70 qErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~dii-kmlVgNKiDkes~R---~V~reEG~kfAr 145 (209)
T KOG0080|consen 70 QERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDII-KMLVGNKIDKESER---VVDREEGLKFAR 145 (209)
T ss_pred hHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHh-Hhhhcccccchhcc---cccHHHHHHHHH
Confidence 9999999999999999999999998754433334443 33322 333 34688999965311 111234445555
Q ss_pred ccccCCCceEEEEecccccc
Q psy5021 799 EYDFDGENTKIVIGSALLAL 818 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~ 818 (1021)
+.+ +-|+.+||++..
T Consensus 146 ~h~-----~LFiE~SAkt~~ 160 (209)
T KOG0080|consen 146 KHR-----CLFIECSAKTRE 160 (209)
T ss_pred hhC-----cEEEEcchhhhc
Confidence 553 578999999863
No 488
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.37 E-value=3.3e-12 Score=129.62 Aligned_cols=156 Identities=18% Similarity=0.110 Sum_probs=97.6
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMIT 733 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~ 733 (1021)
+-++|.+++|||||+++|++........ ............+......+.+|||||+++|......
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~ 67 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGKFPTEYV---------------PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPL 67 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCC---------------CceeeeeEEEEEECCEEEEEEEEeCCCcccccccchh
Confidence 4567889999999999999743210000 0000111111222223456889999999988766666
Q ss_pred HhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhHHHH--------HHHHHHHhhhccc
Q psy5021 734 GAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKELLDL--------VEMEIRELLTEYD 801 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~--------~~~~~~~~l~~~~ 801 (1021)
.++.+|++++|+|+++....+. .+++..+... ++| +++|+||+|+......... ...+..++....+
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 146 (171)
T cd00157 68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIG 146 (171)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhC
Confidence 7789999999999987433222 2334433333 477 9999999998763322110 1233344444444
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
. .+++++||++| +++.++++.|.+
T Consensus 147 ~----~~~~~~Sa~~~-----------~gi~~l~~~i~~ 170 (171)
T cd00157 147 A----IGYMECSALTQ-----------EGVKEVFEEAIR 170 (171)
T ss_pred C----eEEEEeecCCC-----------CCHHHHHHHHhh
Confidence 2 37999999987 388899988754
No 489
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.37 E-value=1.2e-11 Score=130.04 Aligned_cols=114 Identities=16% Similarity=0.118 Sum_probs=79.3
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+++|..++|||||+.++....- . .++ -.|+.... ...+..++....++||||+|+.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f--~-----------~~y-------~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e 60 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY--P-----------GSY-------VPTVFENY-TASFEIDKRRIELNMWDTSGSS 60 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--C-----------Ccc-------CCccccce-EEEEEECCEEEEEEEEeCCCcH
Confidence 4789999999999999999963211 0 011 11222111 1122223446889999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHH-h--hcCCCEEEEEeCcCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQS-Q--KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~-~--~~~~p~iiviNK~D~~~ 143 (1021)
.|......+++.+|++|+|+|.++....+.. ..|... . ..++|+++|.||+|+..
T Consensus 61 ~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 61 YYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred HHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 9999888999999999999999986443332 345432 2 24789999999999853
No 490
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.37 E-value=2.5e-12 Score=131.25 Aligned_cols=156 Identities=13% Similarity=0.069 Sum_probs=99.4
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~~ 730 (1021)
.+..+|..++|||||++++.+..-. .....+.+. +. ...+..++ ..+.+|||||+++|...
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~--------------~~~~~t~~~--~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~ 65 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYP--------------ETYVPTVFE--NY-TASFEIDEQRIELSLWDTSGSPYYDNV 65 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--------------CCcCCceEE--EE-EEEEEECCEEEEEEEEECCCchhhhhc
Confidence 3567888999999999999874310 001111111 11 12233333 45779999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhHH---------HHHHHHHHHhh
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKELL---------DLVEMEIRELL 797 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~---------~~~~~~~~~~l 797 (1021)
...+++.+|++|+|+|.++....+. ..++..+... ..| +|+|.||+|+.++.... .-..++..++.
T Consensus 66 ~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a 144 (178)
T cd04131 66 RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA 144 (178)
T ss_pred chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCC-EEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence 8888899999999999987554333 2344444443 456 89999999986421000 01123445555
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+.++. .+++.+||++|. .+++++++.+..
T Consensus 145 ~~~~~----~~~~E~SA~~~~----------~~v~~~F~~~~~ 173 (178)
T cd04131 145 KQLGA----EIYLECSAFTSE----------KSVRDIFHVATM 173 (178)
T ss_pred HHhCC----CEEEECccCcCC----------cCHHHHHHHHHH
Confidence 55542 378999999873 137888877654
No 491
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.37 E-value=5.7e-13 Score=115.44 Aligned_cols=69 Identities=22% Similarity=0.313 Sum_probs=66.0
Q ss_pred eeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEEEEEcchhhhccCCcccccceeeeeeeee
Q psy5021 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVD 661 (1021)
Q Consensus 593 EP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~ 661 (1021)
||||+++|.||++++|+|+++|++|||+|.+.+..++.+.|+|.+|++++++|.++|+++|.|.+.+..
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~ 69 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKGDEVTLEGTIPVATSQDYQSELPSYTHGEGVLET 69 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecCCEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEE
Confidence 899999999999999999999999999999999888899999999999999999999999999987754
No 492
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.37 E-value=5.7e-13 Score=115.42 Aligned_cols=69 Identities=45% Similarity=0.677 Sum_probs=65.7
Q ss_pred eeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEEEEEcchhhhccCCcccccceeeeeeeee
Q psy5021 593 EPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVD 661 (1021)
Q Consensus 593 EP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~ 661 (1021)
||||+++|.||++++|+|+++|++|||+|.+++..++.+.|+|.+|++++++|.++|+++|.|.+.+..
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~ 69 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSM 69 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecCCeEEEEEEECHHHhhChHHHHHhhCCCcEEEEE
Confidence 899999999999999999999999999999999877889999999999999999999999999987754
No 493
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.37 E-value=1.6e-11 Score=129.78 Aligned_cols=116 Identities=20% Similarity=0.122 Sum_probs=81.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
...+|+++|+.|+|||||+++++.. .... ....|+........+..++....+++|||||
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~--~~~~------------------~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g 67 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTG--EFEK------------------KYIPTLGVEVHPLKFYTNCGPICFNVWDTAG 67 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhC--CCCC------------------CCCCccceEEEEEEEEECCeEEEEEEEECCC
Confidence 3457999999999999999887631 1110 0112333333333333344478999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHH---hhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQS---QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~---~~~~~p~iiviNK~D~~ 142 (1021)
+.+|.......++.+|++++|+|.++....+....|... ...++|+++++||+|+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 68 QEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred chhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 999988888888999999999999987665555444321 12478999999999974
No 494
>KOG0098|consensus
Probab=99.37 E-value=3.8e-12 Score=122.32 Aligned_cols=141 Identities=19% Similarity=0.165 Sum_probs=98.7
Q ss_pred eeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHHHh
Q psy5021 656 TIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMITGA 735 (1021)
Q Consensus 656 ~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~ 735 (1021)
..|..++|||.|+.+++... +...+..+.|+..-.....++....++.+|||+||+.|...+.+++
T Consensus 11 iiGd~gVGKSclllrf~~kr--------------F~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syY 76 (216)
T KOG0098|consen 11 IIGDTGVGKSCLLLRFTDKR--------------FQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYY 76 (216)
T ss_pred EECCCCccHHHHHHHHhccC--------------ccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHh
Confidence 45668999999999999743 3333434444433333333443445678999999999999999999
Q ss_pred hhCCEEEEEEECCCCCc-HHHHHHHHHHHHcCCCe--EEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEEe
Q psy5021 736 AQMDGAILVCSAVDGPM-PQTREHILLARQVGVPN--IVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIG 812 (1021)
Q Consensus 736 ~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~~ip~--iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~i 812 (1021)
+.|-+||||.|.+...+ .....||.-++.++-++ |+++.||+|+.... +--+++-+.+.+..|+ .++.+
T Consensus 77 r~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR---~Vs~EEGeaFA~ehgL-----ifmET 148 (216)
T KOG0098|consen 77 RGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR---EVSKEEGEAFAREHGL-----IFMET 148 (216)
T ss_pred ccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc---cccHHHHHHHHHHcCc-----eeehh
Confidence 99999999999987544 33444556666664333 56677999997532 2234566777777775 57799
Q ss_pred cccccc
Q psy5021 813 SALLAL 818 (1021)
Q Consensus 813 Sa~~~~ 818 (1021)
||+++.
T Consensus 149 Sakt~~ 154 (216)
T KOG0098|consen 149 SAKTAE 154 (216)
T ss_pred hhhhhh
Confidence 999883
No 495
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.36 E-value=5.3e-12 Score=126.40 Aligned_cols=150 Identities=19% Similarity=0.161 Sum_probs=98.5
Q ss_pred eeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC--CeEEEEEecCChhhhHHHH
Q psy5021 654 KGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE--NKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 654 ~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~--~~~i~liDtpG~~~~~~~~ 731 (1021)
+.++|.+++|||||+++|++.... ... . ..+.+.....+... ...+.+||+||+.++....
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~~~-~~~--------~--------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 64 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTFV-EEY--------D--------PTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMR 64 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCC-cCc--------C--------CChhHeEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 467899999999999999874310 000 0 00111222233333 3567899999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 732 ITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
...+..+|++++|+|.++... .+...++..+.. .+.| +++++||+|+...... ..+++..+.+..+
T Consensus 65 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~----- 135 (160)
T cd00876 65 DLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIP-IVLVGNKCDLENERQV---SKEEGKALAKEWG----- 135 (160)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCccccccee---cHHHHHHHHHHcC-----
Confidence 888899999999999887432 223333333332 2566 9999999998752111 1233444444443
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+++++|++++ .++++++++|.+
T Consensus 136 ~~~~~~S~~~~-----------~~i~~l~~~l~~ 158 (160)
T cd00876 136 CPFIETSAKDN-----------INIDEVFKLLVR 158 (160)
T ss_pred CcEEEeccCCC-----------CCHHHHHHHHHh
Confidence 47899999977 388999998865
No 496
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.36 E-value=5.1e-12 Score=128.87 Aligned_cols=157 Identities=17% Similarity=0.115 Sum_probs=96.6
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
...++|..++|||||++++.+..... ......+... .....+......+.+|||||+++|...+.
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~~~--------------~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQFPE--------------VYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRP 67 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccc
Confidence 35678999999999999999743110 0011111111 11222222234578999999999987776
Q ss_pred HHhhhCCEEEEEEECCCCCcHHH-HHHH-HHHHH--cCCCeEEEEEeeccccchhhHHHHH---------HHHHHHhhhc
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQT-REHI-LLARQ--VGVPNIVVFLNKADCVQDKELLDLV---------EMEIRELLTE 799 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt-~e~l-~~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~~~l~~ 799 (1021)
.++.++|++++|+|.++....+. .+.| ..+.. .++| +++++||+|+.+.....+.+ ..+..++.+.
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~ 146 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANK 146 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHH
Confidence 77899999999999986432222 2222 22332 2677 99999999987532211111 1222333333
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+ ..+++++||++|. |+++++++|.+
T Consensus 147 ~~----~~~~~~~Sa~~~~-----------~v~~lf~~l~~ 172 (175)
T cd01870 147 IG----AFGYMECSAKTKE-----------GVREVFEMATR 172 (175)
T ss_pred cC----CcEEEEeccccCc-----------CHHHHHHHHHH
Confidence 33 2478999999873 88999988864
No 497
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.36 E-value=5.6e-12 Score=129.25 Aligned_cols=154 Identities=19% Similarity=0.161 Sum_probs=97.0
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC--CeEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE--NKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~--~~~i~liDtpG~~~~~~ 729 (1021)
..+.++|.+++|||||++++++....... ....+ ......+... +..+.+|||||+.+|..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~--------------~~t~~---~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 64 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY--------------YPTIE---NTFSKIIRYKGQDYHLEIVDTAGQDEYSI 64 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccc--------------Ccchh---hhEEEEEEECCEEEEEEEEECCChHhhHH
Confidence 35678999999999999999964311000 00000 0011122333 34578999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
....++..+|++++|+|.++....+. .+.+..+.. .+.| +|+++||+|+........ .+...+.+.++
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~~~---~~~~~~~~~~~--- 137 (180)
T cd04137 65 LPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQRQVST---EEGKELAESWG--- 137 (180)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcCccCH---HHHHHHHHHcC---
Confidence 88888999999999999987543222 222222222 3567 889999999864221111 12233333333
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||+++ +++.+++++|.+.+
T Consensus 138 --~~~~~~Sa~~~-----------~gv~~l~~~l~~~~ 162 (180)
T cd04137 138 --AAFLESSAREN-----------ENVEEAFELLIEEI 162 (180)
T ss_pred --CeEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 47899999987 37777777776543
No 498
>KOG0098|consensus
Probab=99.36 E-value=4.1e-12 Score=122.06 Aligned_cols=116 Identities=20% Similarity=0.168 Sum_probs=82.1
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
..-.+.|+|..|+|||+|+.++....-... .| .|+......-.+..+++..++++|||.|
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~-----------hd---------~TiGvefg~r~~~id~k~IKlqiwDtaG 64 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPV-----------HD---------LTIGVEFGARMVTIDGKQIKLQIWDTAG 64 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccc-----------cc---------ceeeeeeceeEEEEcCceEEEEEEecCC
Confidence 345678999999999999998853221111 11 1333222222233345688999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
|+.|.+-+.++++.+-|||||.|.+..-.......| ..++ ..++-++++.||+|+.
T Consensus 65 qe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~ 124 (216)
T KOG0098|consen 65 QESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE 124 (216)
T ss_pred cHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh
Confidence 999999999999999999999999876555444444 3333 3567788889999985
No 499
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.36 E-value=2e-11 Score=123.16 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=74.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCCc
Q psy5021 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDF 90 (1021)
Q Consensus 11 i~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f 90 (1021)
|+++|+.|+|||||++.|......... +...+.|.... .+.+. ..+.++||||+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~----------------~~~~~~t~~~~--~~~~~-----~~~~~~D~~g~~~~ 58 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLART----------------SKTPGKTQLIN--FFNVN-----DKFRLVDLPGYGYA 58 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeee----------------cCCCCcceeEE--EEEcc-----CeEEEecCCCcccc
Confidence 789999999999999999632111110 01112232221 12222 37899999998653
Q ss_pred ----------HHHHHHHhh---ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 91 ----------TIEVERSLR---VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 91 ----------~~~~~~~l~---~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
...+..++. .++++++++|...........+++.+...+.|+++++||+|+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 59 KVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred ccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 222333333 4678999999998877777778888888899999999999985
No 500
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.35 E-value=3.7e-12 Score=129.60 Aligned_cols=156 Identities=20% Similarity=0.155 Sum_probs=110.9
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
-+..++-+.|..++|||||+++|...... .. ..|.......+...+..+.+||.+|+..+.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~---------------~~----~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~ 72 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS---------------ET----IPTIGFNIEEIKYKGYSLTIWDLGGQESFR 72 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE---------------EE----EEESSEEEEEEEETTEEEEEEEESSSGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc---------------cc----CcccccccceeeeCcEEEEEEecccccccc
Confidence 45677888999999999999999863211 01 113334445566788999999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGP-MPQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
+.+..++..+|++|+|||+++.. ..+.++.+..+.. .++| ++|++||+|+.+... . .++...+....+.
T Consensus 73 ~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~~~~-~----~~i~~~l~l~~l~ 146 (175)
T PF00025_consen 73 PLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIP-ILILANKQDLPDAMS-E----EEIKEYLGLEKLK 146 (175)
T ss_dssp GGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTTSST-H----HHHHHHTTGGGTT
T ss_pred ccceeeccccceeEEEEecccceeecccccchhhhcchhhcccce-EEEEeccccccCcch-h----hHHHhhhhhhhcc
Confidence 99999999999999999998743 2445555544333 2566 999999999876321 1 2333333322232
Q ss_pred -CCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 804 -GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 804 -~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
...+.++.+||.+| +|+.+.+++|.+
T Consensus 147 ~~~~~~v~~~sa~~g-----------~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 147 NKRPWSVFSCSAKTG-----------EGVDEGLEWLIE 173 (175)
T ss_dssp SSSCEEEEEEBTTTT-----------BTHHHHHHHHHH
T ss_pred cCCceEEEeeeccCC-----------cCHHHHHHHHHh
Confidence 45678999999988 488888888864
Done!