Query psy5021
Match_columns 1021
No_of_seqs 654 out of 5586
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 23:49:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fn5_A EF-G 1, elongation fact 100.0 1E-128 5E-133 1188.8 66.0 659 4-662 9-689 (709)
2 2rdo_7 EF-G, elongation factor 100.0 7E-124 2E-128 1140.3 75.7 657 4-662 6-683 (704)
3 2xex_A Elongation factor G; GT 100.0 6E-122 2E-126 1122.9 73.8 653 4-662 6-671 (693)
4 1dar_A EF-G, elongation factor 100.0 7E-122 2E-126 1121.7 66.2 653 4-662 8-672 (691)
5 2dy1_A Elongation factor G; tr 100.0 5E-115 2E-119 1058.6 72.0 638 1-662 1-642 (665)
6 3j25_A Tetracycline resistance 100.0 3E-120 9E-125 1100.0 13.7 604 7-662 1-605 (638)
7 1n0u_A EF-2, elongation factor 100.0 2E-105 7E-110 995.2 51.1 641 4-662 15-797 (842)
8 3vqt_A RF-3, peptide chain rel 100.0 3.2E-91 1.1E-95 827.5 33.5 479 4-501 27-523 (548)
9 2ywe_A GTP-binding protein LEP 100.0 5.1E-76 1.7E-80 697.1 45.2 461 4-662 2-476 (600)
10 3cb4_D GTP-binding protein LEP 100.0 3.7E-74 1.3E-78 683.3 44.6 457 6-662 2-471 (599)
11 3tr5_A RF-3, peptide chain rel 100.0 1.2E-73 4E-78 673.3 39.1 457 4-478 9-476 (528)
12 2h5e_A Peptide chain release f 100.0 8.5E-73 2.9E-77 667.1 42.4 457 4-478 9-477 (529)
13 1d2e_A Elongation factor TU (E 100.0 9.3E-55 3.2E-59 500.3 35.6 368 651-1021 3-372 (397)
14 3j2k_7 ERF3, eukaryotic polype 100.0 6.8E-54 2.3E-58 497.9 39.3 362 650-1021 16-424 (439)
15 2c78_A Elongation factor TU-A; 100.0 4.3E-54 1.5E-58 496.9 36.3 376 646-1021 6-390 (405)
16 3avx_A Elongation factor TS, e 100.0 2.4E-52 8E-57 510.4 34.4 369 649-1021 294-663 (1289)
17 1f60_A Elongation factor EEF1A 100.0 1E-52 3.5E-57 490.7 29.8 364 650-1021 6-426 (458)
18 3mca_A HBS1, elongation factor 100.0 1.9E-52 6.4E-57 500.9 21.6 363 650-1021 176-578 (592)
19 1jny_A EF-1-alpha, elongation 100.0 1.9E-51 6.4E-56 478.2 29.2 364 650-1021 5-414 (435)
20 3p26_A Elongation factor 1 alp 100.0 7.9E-51 2.7E-55 479.3 33.3 365 650-1021 32-462 (483)
21 1r5b_A Eukaryotic peptide chai 100.0 1.8E-51 6E-56 481.4 26.5 360 651-1021 43-452 (467)
22 3izq_1 HBS1P, elongation facto 100.0 2E-50 7E-55 484.4 28.9 365 650-1021 166-596 (611)
23 1zun_B Sulfate adenylate trans 100.0 8.3E-49 2.8E-53 456.2 33.5 360 651-1021 24-420 (434)
24 2elf_A Protein translation elo 100.0 1.8E-48 6.1E-53 440.8 29.5 323 653-1021 23-356 (370)
25 1wb1_A Translation elongation 100.0 1.2E-49 4E-54 466.8 16.4 347 645-1021 13-374 (482)
26 1s0u_A EIF-2-gamma, translatio 100.0 2.3E-46 8E-51 432.3 31.8 336 650-1021 7-392 (408)
27 1kk1_A EIF2gamma; initiation o 100.0 9.1E-46 3.1E-50 428.0 36.2 335 651-1021 10-394 (410)
28 3sjy_A Translation initiation 100.0 1.3E-44 4.3E-49 417.2 34.5 347 649-1019 6-385 (403)
29 3e3x_A BIPA; MCSG,PSI2, struct 100.0 1.1E-34 3.7E-39 312.0 16.4 184 365-662 2-195 (332)
30 1g7s_A Translation initiation 100.0 3.6E-34 1.2E-38 341.0 22.5 335 7-419 4-373 (594)
31 2c78_A Elongation factor TU-A; 100.0 4.1E-33 1.4E-37 321.5 28.5 271 5-382 8-308 (405)
32 3j2k_7 ERF3, eukaryotic polype 100.0 5E-33 1.7E-37 322.7 29.2 278 5-384 14-329 (439)
33 1d2e_A Elongation factor TU (E 100.0 3.1E-33 1.1E-37 321.2 21.8 268 8-382 3-290 (397)
34 1jny_A EF-1-alpha, elongation 100.0 4.7E-33 1.6E-37 323.4 22.8 274 6-384 4-319 (435)
35 2elf_A Protein translation elo 100.0 2.7E-32 9.1E-37 308.5 19.8 243 8-380 21-275 (370)
36 3mca_A HBS1, elongation factor 100.0 1.2E-32 4.2E-37 329.5 16.2 273 5-383 174-490 (592)
37 3avx_A Elongation factor TS, e 100.0 2.5E-31 8.4E-36 325.7 23.8 271 5-382 293-581 (1289)
38 1r5b_A Eukaryotic peptide chai 100.0 2.2E-31 7.4E-36 311.4 22.1 274 6-383 41-357 (467)
39 1zun_B Sulfate adenylate trans 100.0 1E-30 3.6E-35 303.8 26.6 273 5-383 21-327 (434)
40 1kk1_A EIF2gamma; initiation o 100.0 1.2E-30 4E-35 301.6 26.8 261 5-382 7-316 (410)
41 2ywe_A GTP-binding protein LEP 100.0 9.9E-31 3.4E-35 309.9 24.5 266 652-940 7-281 (600)
42 3p26_A Elongation factor 1 alp 100.0 2E-30 7E-35 305.3 26.9 281 6-383 31-363 (483)
43 1f60_A Elongation factor EEF1A 100.0 1.6E-30 5.6E-35 303.2 25.5 273 6-383 5-329 (458)
44 2hjg_A GTP-binding protein ENG 100.0 1.7E-30 5.8E-35 302.4 22.2 144 655-818 179-334 (436)
45 3cb4_D GTP-binding protein LEP 100.0 4.6E-30 1.6E-34 305.1 25.6 266 652-940 5-279 (599)
46 1s0u_A EIF-2-gamma, translatio 100.0 1.9E-29 6.5E-34 291.0 26.6 260 6-382 6-314 (408)
47 3izq_1 HBS1P, elongation facto 100.0 4.1E-30 1.4E-34 308.4 21.4 284 7-383 166-497 (611)
48 3vqt_A RF-3, peptide chain rel 100.0 7.9E-30 2.7E-34 302.1 21.9 269 651-939 31-400 (548)
49 4dcu_A GTP-binding protein ENG 100.0 1.3E-29 4.4E-34 296.7 20.3 155 655-840 199-365 (456)
50 1zo1_I IF2, translation initia 100.0 2.3E-31 8E-36 308.7 3.8 253 6-381 2-257 (501)
51 1wb1_A Translation elongation 100.0 5.7E-30 2E-34 300.0 12.7 257 7-379 18-281 (482)
52 1mky_A Probable GTP-binding pr 100.0 1.1E-27 3.9E-32 278.9 30.7 155 655-840 184-351 (439)
53 3sjy_A Translation initiation 100.0 1.9E-28 6.6E-33 282.1 22.0 273 6-383 6-309 (403)
54 3e1y_E Eukaryotic peptide chai 100.0 1.9E-28 6.6E-33 252.4 17.5 164 849-1021 3-186 (204)
55 3izy_P Translation initiation 100.0 6.4E-30 2.2E-34 299.1 6.9 258 7-384 3-261 (537)
56 3tr5_A RF-3, peptide chain rel 100.0 5.6E-28 1.9E-32 284.6 20.6 269 651-939 13-382 (528)
57 2h5e_A Peptide chain release f 100.0 8.4E-28 2.9E-32 283.5 20.5 270 650-939 12-383 (529)
58 3izy_P Translation initiation 99.9 5.6E-30 1.9E-34 299.6 -0.9 255 650-941 3-261 (537)
59 2rdo_7 EF-G, elongation factor 99.9 1.4E-26 4.7E-31 282.6 28.8 270 650-939 9-401 (704)
60 3j25_A Tetracycline resistance 99.9 9.8E-30 3.3E-34 307.8 -0.9 266 652-939 3-330 (638)
61 1zo1_I IF2, translation initia 99.9 9.6E-29 3.3E-33 286.8 7.3 249 650-939 3-258 (501)
62 4fn5_A EF-G 1, elongation fact 99.9 3.6E-27 1.2E-31 289.4 19.7 268 652-939 14-404 (709)
63 1g7s_A Translation initiation 99.9 5.3E-27 1.8E-31 279.4 17.5 260 648-939 2-328 (594)
64 2dy1_A Elongation factor G; tr 99.9 2.9E-26 9.8E-31 278.8 22.5 266 651-939 9-366 (665)
65 1dar_A EF-G, elongation factor 99.9 1.4E-25 4.9E-30 273.5 28.4 270 650-939 11-393 (691)
66 2xex_A Elongation factor G; GT 99.9 2.9E-25 1E-29 270.8 25.5 270 650-939 9-393 (693)
67 1n0u_A EF-2, elongation factor 99.9 6.4E-23 2.2E-27 255.1 21.6 284 651-938 19-472 (842)
68 1wf3_A GTP-binding protein; GT 99.8 3.2E-18 1.1E-22 188.1 17.6 117 6-143 5-131 (301)
69 3iev_A GTP-binding protein ERA 99.7 1.4E-17 4.9E-22 184.0 17.4 118 5-142 7-135 (308)
70 3qq5_A Small GTP-binding prote 99.7 9.3E-19 3.2E-23 199.9 6.9 120 4-145 30-156 (423)
71 1ega_A Protein (GTP-binding pr 99.7 5.6E-18 1.9E-22 186.6 11.0 116 6-143 6-130 (301)
72 2lkc_A Translation initiation 99.7 1.6E-17 5.3E-22 168.3 13.3 120 6-147 6-125 (178)
73 2dyk_A GTP-binding protein; GT 99.7 3.4E-17 1.2E-21 162.8 13.8 114 8-142 1-121 (161)
74 4dhe_A Probable GTP-binding pr 99.7 3.4E-17 1.2E-21 172.6 14.6 121 4-143 25-158 (223)
75 2xtp_A GTPase IMAP family memb 99.7 3.4E-18 1.2E-22 185.0 4.9 202 6-230 20-256 (260)
76 1upt_A ARL1, ADP-ribosylation 99.7 1.3E-16 4.6E-21 160.1 15.3 115 5-144 4-123 (171)
77 1r8s_A ADP-ribosylation factor 99.7 3.5E-16 1.2E-20 155.9 18.3 110 10-144 2-116 (164)
78 2hjg_A GTP-binding protein ENG 99.7 2.8E-17 9.6E-22 191.0 11.5 118 6-144 173-301 (436)
79 1zj6_A ADP-ribosylation factor 99.7 2.1E-16 7.3E-21 161.5 15.7 113 6-143 14-131 (187)
80 1zd9_A ADP-ribosylation factor 99.7 3.4E-16 1.2E-20 160.2 17.1 115 6-144 20-139 (188)
81 3iev_A GTP-binding protein ERA 99.7 2E-16 6.8E-21 174.9 16.2 163 648-843 7-181 (308)
82 3iby_A Ferrous iron transport 99.7 3.8E-17 1.3E-21 175.4 10.0 111 8-142 1-123 (256)
83 1wf3_A GTP-binding protein; GT 99.7 2.3E-16 7.7E-21 173.4 16.3 158 649-843 5-172 (301)
84 4bas_A ADP-ribosylation factor 99.7 3.8E-16 1.3E-20 161.2 17.0 118 4-144 13-142 (199)
85 1svi_A GTP-binding protein YSX 99.7 2.4E-16 8.3E-21 162.1 14.6 117 4-143 19-148 (195)
86 4dcu_A GTP-binding protein ENG 99.7 1.4E-16 4.8E-21 186.2 13.5 118 6-144 193-321 (456)
87 4dhe_A Probable GTP-binding pr 99.7 3E-16 1E-20 165.3 14.4 168 650-845 28-212 (223)
88 2efe_B Small GTP-binding prote 99.7 2.9E-16 1E-20 159.3 13.6 119 5-143 9-131 (181)
89 2bme_A RAB4A, RAS-related prot 99.7 2.1E-16 7.2E-21 161.2 12.1 122 1-142 3-128 (186)
90 3pqc_A Probable GTP-binding pr 99.7 5.5E-16 1.9E-20 159.2 15.2 116 4-143 19-147 (195)
91 2lkc_A Translation initiation 99.7 4.2E-17 1.4E-21 165.1 6.6 159 650-842 7-169 (178)
92 2fg5_A RAB-22B, RAS-related pr 99.7 4.4E-16 1.5E-20 160.0 14.3 118 5-142 20-141 (192)
93 1fzq_A ADP-ribosylation factor 99.7 1.1E-15 3.7E-20 155.5 17.0 114 6-144 14-132 (181)
94 2fn4_A P23, RAS-related protei 99.7 3.4E-16 1.2E-20 158.6 13.2 121 1-142 2-127 (181)
95 3t1o_A Gliding protein MGLA; G 99.7 6E-16 2E-20 159.3 15.2 128 6-143 12-149 (198)
96 3i8s_A Ferrous iron transport 99.7 1.2E-16 4.2E-21 173.5 10.0 111 8-142 3-125 (274)
97 2b6h_A ADP-ribosylation factor 99.7 8E-16 2.7E-20 158.1 15.4 114 6-144 27-145 (192)
98 2h57_A ADP-ribosylation factor 99.7 7.2E-16 2.5E-20 158.0 14.9 115 6-143 19-140 (190)
99 3bc1_A RAS-related protein RAB 99.7 1.4E-15 4.8E-20 156.0 16.9 122 1-142 3-140 (195)
100 1m2o_B GTP-binding protein SAR 99.7 4.5E-16 1.6E-20 159.7 13.0 111 8-143 23-138 (190)
101 3tw8_B RAS-related protein RAB 99.7 1.1E-16 3.7E-21 162.3 8.0 122 1-142 2-126 (181)
102 2h17_A ADP-ribosylation factor 99.7 6.4E-16 2.2E-20 157.1 13.7 113 6-143 19-136 (181)
103 3tkl_A RAS-related protein RAB 99.6 1.2E-15 4.3E-20 156.9 15.9 120 4-143 12-135 (196)
104 1ksh_A ARF-like protein 2; sma 99.6 4.9E-16 1.7E-20 158.6 12.5 114 6-144 16-134 (186)
105 1vg8_A RAS-related protein RAB 99.6 3.3E-16 1.1E-20 162.8 11.3 122 1-142 1-130 (207)
106 3kkq_A RAS-related protein M-R 99.6 1.7E-15 5.8E-20 154.1 16.3 117 6-143 16-137 (183)
107 2fu5_C RAS-related protein RAB 99.6 4.2E-16 1.4E-20 158.6 11.7 123 1-143 1-127 (183)
108 3k53_A Ferrous iron transport 99.6 5.1E-16 1.7E-20 168.7 12.8 111 7-141 2-121 (271)
109 2fg5_A RAB-22B, RAS-related pr 99.6 5.2E-16 1.8E-20 159.4 12.3 160 650-843 22-185 (192)
110 1z0f_A RAB14, member RAS oncog 99.6 7.1E-16 2.4E-20 156.0 13.0 118 5-142 12-133 (179)
111 1ky3_A GTP-binding protein YPT 99.6 1.1E-15 3.7E-20 155.1 14.4 123 1-142 1-131 (182)
112 3i8s_A Ferrous iron transport 99.6 1.4E-16 4.9E-21 173.0 8.2 155 650-843 2-168 (274)
113 1ek0_A Protein (GTP-binding pr 99.6 2.4E-15 8.1E-20 150.6 16.6 114 9-142 4-121 (170)
114 2efe_B Small GTP-binding prote 99.6 3.9E-16 1.3E-20 158.4 10.8 161 649-843 10-174 (181)
115 1ek0_A Protein (GTP-binding pr 99.6 3E-16 1E-20 157.2 9.8 163 650-843 2-168 (170)
116 1r2q_A RAS-related protein RAB 99.6 7.9E-16 2.7E-20 154.1 12.8 116 7-142 5-124 (170)
117 1z0j_A RAB-22, RAS-related pro 99.6 9.6E-16 3.3E-20 153.6 13.3 117 6-142 4-124 (170)
118 2bcg_Y Protein YP2, GTP-bindin 99.6 5.1E-16 1.7E-20 161.4 11.5 123 1-143 1-127 (206)
119 2gf9_A RAS-related protein RAB 99.6 9.5E-16 3.2E-20 157.0 13.2 118 5-142 19-140 (189)
120 1r2q_A RAS-related protein RAB 99.6 5.9E-16 2E-20 155.0 11.4 160 650-843 5-168 (170)
121 2il1_A RAB12; G-protein, GDP, 99.6 8.5E-16 2.9E-20 157.9 12.9 118 5-142 23-144 (192)
122 2hup_A RAS-related protein RAB 99.6 2.4E-15 8.2E-20 155.7 16.3 118 5-142 26-147 (201)
123 2p5s_A RAS and EF-hand domain 99.6 2.3E-15 7.8E-20 155.6 16.1 118 5-142 25-146 (199)
124 1zbd_A Rabphilin-3A; G protein 99.6 2.2E-15 7.6E-20 156.1 16.0 119 5-143 5-127 (203)
125 2hxs_A RAB-26, RAS-related pro 99.6 7.6E-16 2.6E-20 155.7 12.2 118 6-142 4-128 (178)
126 1g16_A RAS-related protein SEC 99.6 1.5E-15 5.3E-20 152.1 14.1 116 7-142 2-121 (170)
127 1kao_A RAP2A; GTP-binding prot 99.6 7.8E-16 2.7E-20 153.5 11.8 114 8-142 3-121 (167)
128 1f6b_A SAR1; gtpases, N-termin 99.6 1.3E-15 4.3E-20 157.4 13.6 112 7-143 24-140 (198)
129 1z2a_A RAS-related protein RAB 99.6 1.5E-15 5.1E-20 151.9 13.7 117 6-142 3-122 (168)
130 2x77_A ADP-ribosylation factor 99.6 3.3E-16 1.1E-20 160.4 9.0 114 6-144 20-138 (189)
131 3a1s_A Iron(II) transport prot 99.6 4.9E-16 1.7E-20 167.1 10.7 112 6-141 3-122 (258)
132 2hxs_A RAB-26, RAS-related pro 99.6 7.3E-16 2.5E-20 155.9 11.4 160 649-843 4-172 (178)
133 1svi_A GTP-binding protein YSX 99.6 2.5E-15 8.5E-20 154.5 15.6 159 650-842 22-193 (195)
134 2dyk_A GTP-binding protein; GT 99.6 9.7E-16 3.3E-20 152.1 12.1 151 653-842 3-160 (161)
135 2ew1_A RAS-related protein RAB 99.6 7.3E-16 2.5E-20 159.6 11.5 119 4-142 22-144 (201)
136 2wji_A Ferrous iron transport 99.6 1.9E-15 6.4E-20 151.2 14.0 111 8-142 3-121 (165)
137 3t5g_A GTP-binding protein RHE 99.6 1.5E-15 5.1E-20 154.2 13.5 117 5-142 3-124 (181)
138 2g6b_A RAS-related protein RAB 99.6 3.2E-15 1.1E-19 151.4 15.9 120 5-143 7-130 (180)
139 1wms_A RAB-9, RAB9, RAS-relate 99.6 1.8E-15 6E-20 152.9 13.8 118 5-142 4-129 (177)
140 2erx_A GTP-binding protein DI- 99.6 1.6E-15 5.5E-20 152.2 13.4 114 8-142 3-122 (172)
141 1z0f_A RAB14, member RAS oncog 99.6 8.3E-16 2.8E-20 155.5 11.3 159 649-841 13-175 (179)
142 2y8e_A RAB-protein 6, GH09086P 99.6 1.1E-15 3.6E-20 154.7 12.1 115 8-142 14-132 (179)
143 2atx_A Small GTP binding prote 99.6 2.3E-15 7.7E-20 154.8 14.7 119 5-144 15-137 (194)
144 1c1y_A RAS-related protein RAP 99.6 2.5E-15 8.4E-20 150.1 14.5 114 8-142 3-121 (167)
145 4dsu_A GTPase KRAS, isoform 2B 99.6 3.1E-15 1.1E-19 152.7 15.4 116 7-143 3-123 (189)
146 2gj8_A MNME, tRNA modification 99.6 1.8E-15 6E-20 152.6 13.3 113 9-142 5-128 (172)
147 1x3s_A RAS-related protein RAB 99.6 2.5E-15 8.6E-20 154.4 14.6 117 6-142 13-134 (195)
148 1z0j_A RAB-22, RAS-related pro 99.6 8.5E-16 2.9E-20 153.9 10.7 161 649-843 4-168 (170)
149 1z08_A RAS-related protein RAB 99.6 2E-15 6.7E-20 151.4 13.2 117 6-142 4-124 (170)
150 1moz_A ARL1, ADP-ribosylation 99.6 5.7E-16 1.9E-20 157.5 9.3 114 6-144 16-134 (183)
151 2oil_A CATX-8, RAS-related pro 99.6 1.3E-15 4.4E-20 156.5 11.8 119 4-142 21-143 (193)
152 1z06_A RAS-related protein RAB 99.6 1.2E-15 4.1E-20 156.2 11.5 117 6-142 18-140 (189)
153 1u8z_A RAS-related protein RAL 99.6 2.4E-15 8.2E-20 150.1 13.2 115 7-142 3-122 (168)
154 1zj6_A ADP-ribosylation factor 99.6 1.7E-15 5.9E-20 154.8 12.3 160 650-845 15-179 (187)
155 2nzj_A GTP-binding protein REM 99.6 1.3E-15 4.5E-20 153.5 11.2 117 6-143 2-125 (175)
156 3iby_A Ferrous iron transport 99.6 3.4E-16 1.2E-20 168.0 7.2 150 653-841 3-164 (256)
157 3dz8_A RAS-related protein RAB 99.6 1.9E-15 6.5E-20 155.1 12.3 118 5-142 20-141 (191)
158 2wji_A Ferrous iron transport 99.6 8.1E-16 2.8E-20 153.9 9.1 154 650-842 2-163 (165)
159 2y8e_A RAB-protein 6, GH09086P 99.6 1.9E-15 6.6E-20 152.7 11.9 162 646-843 9-176 (179)
160 3gee_A MNME, tRNA modification 99.6 1.5E-15 5.1E-20 176.6 12.5 113 9-144 234-358 (476)
161 2ce2_X GTPase HRAS; signaling 99.6 9.9E-15 3.4E-19 145.2 16.7 114 9-143 4-122 (166)
162 2a5j_A RAS-related protein RAB 99.6 1.3E-15 4.3E-20 156.4 10.4 118 5-142 18-139 (191)
163 1zd9_A ADP-ribosylation factor 99.6 6.7E-15 2.3E-19 150.6 15.6 159 650-843 21-184 (188)
164 2fh5_B SR-beta, signal recogni 99.6 9.4E-15 3.2E-19 152.7 17.0 130 6-158 5-145 (214)
165 2h57_A ADP-ribosylation factor 99.6 3E-15 1E-19 153.4 13.0 160 649-842 19-185 (190)
166 3cph_A RAS-related protein SEC 99.6 2.8E-15 9.7E-20 156.5 12.9 118 5-142 17-138 (213)
167 3clv_A RAB5 protein, putative; 99.6 1.2E-14 4.2E-19 150.3 17.5 65 77-141 93-159 (208)
168 1ega_A Protein (GTP-binding pr 99.6 1.5E-15 5.3E-20 167.0 11.2 161 648-843 5-174 (301)
169 1mh1_A RAC1; GTP-binding, GTPa 99.6 6E-15 2.1E-19 150.2 14.6 115 8-143 5-123 (186)
170 1mky_A Probable GTP-binding pr 99.6 5E-15 1.7E-19 172.2 15.8 116 7-143 179-306 (439)
171 3pqc_A Probable GTP-binding pr 99.6 7.2E-15 2.5E-19 150.9 15.1 158 650-842 22-192 (195)
172 3q85_A GTP-binding protein REM 99.6 2.4E-15 8.1E-20 150.7 11.2 115 8-142 2-122 (169)
173 4gzl_A RAS-related C3 botulinu 99.6 3.7E-15 1.3E-19 154.7 12.9 118 6-144 28-149 (204)
174 2h17_A ADP-ribosylation factor 99.6 3.2E-15 1.1E-19 151.9 12.1 156 649-840 19-179 (181)
175 2il1_A RAB12; G-protein, GDP, 99.6 2.8E-15 9.4E-20 154.0 11.7 157 650-841 25-187 (192)
176 3o47_A ADP-ribosylation factor 99.6 2.6E-15 9E-20 167.4 12.4 111 9-144 166-281 (329)
177 3bwd_D RAC-like GTP-binding pr 99.6 2E-15 6.9E-20 153.2 10.5 117 6-143 6-126 (182)
178 2a9k_A RAS-related protein RAL 99.6 5.6E-15 1.9E-19 150.5 13.8 116 6-142 16-136 (187)
179 3oes_A GTPase rhebl1; small GT 99.6 2E-15 6.8E-20 156.3 10.4 118 4-142 20-142 (201)
180 3llu_A RAS-related GTP-binding 99.6 1.5E-14 5.1E-19 149.0 17.0 119 5-143 17-143 (196)
181 2f7s_A C25KG, RAS-related prot 99.6 5.2E-15 1.8E-19 155.1 13.6 120 5-142 22-154 (217)
182 2bov_A RAla, RAS-related prote 99.6 6.2E-15 2.1E-19 152.9 14.0 117 5-142 11-132 (206)
183 2b6h_A ADP-ribosylation factor 99.6 6.1E-15 2.1E-19 151.5 13.8 172 635-842 13-189 (192)
184 1r8s_A ADP-ribosylation factor 99.6 8.3E-15 2.8E-19 145.9 14.3 154 653-842 2-160 (164)
185 4djt_A GTP-binding nuclear pro 99.6 1.3E-15 4.3E-20 159.9 8.7 118 5-142 8-130 (218)
186 3q72_A GTP-binding protein RAD 99.6 2.4E-15 8.2E-20 150.2 10.3 114 8-143 2-120 (166)
187 3gj0_A GTP-binding nuclear pro 99.6 1.2E-15 4.3E-20 160.4 8.5 120 4-143 11-133 (221)
188 2p5s_A RAS and EF-hand domain 99.6 1.5E-15 5.2E-20 156.9 9.0 162 650-842 27-195 (199)
189 3qq5_A Small GTP-binding prote 99.6 1.1E-15 3.8E-20 174.5 8.6 155 651-844 34-196 (423)
190 2gf0_A GTP-binding protein DI- 99.6 1.8E-14 6.3E-19 148.4 17.0 117 6-143 6-128 (199)
191 1mh1_A RAC1; GTP-binding, GTPa 99.6 2.6E-15 8.9E-20 152.9 10.4 163 649-844 3-180 (186)
192 3cpj_B GTP-binding protein YPT 99.6 1.8E-15 6.1E-20 159.5 9.5 118 5-142 10-131 (223)
193 4bas_A ADP-ribosylation factor 99.6 4.6E-15 1.6E-19 153.0 12.4 160 648-842 14-187 (199)
194 4dkx_A RAS-related protein RAB 99.6 2.4E-15 8.1E-20 157.0 10.2 163 645-843 7-175 (216)
195 3k53_A Ferrous iron transport 99.6 1.2E-15 4.2E-20 165.7 8.3 154 650-842 2-164 (271)
196 4gzl_A RAS-related C3 botulinu 99.6 3.5E-15 1.2E-19 154.8 11.2 162 647-841 26-202 (204)
197 3a1s_A Iron(II) transport prot 99.6 1.2E-15 4E-20 164.1 7.8 154 650-842 4-165 (258)
198 1fzq_A ADP-ribosylation factor 99.6 1.8E-14 6.1E-19 146.4 16.2 158 650-843 15-177 (181)
199 3tkl_A RAS-related protein RAB 99.6 4.1E-15 1.4E-19 153.0 11.5 156 651-842 16-177 (196)
200 1ksh_A ARF-like protein 2; sma 99.6 5.8E-15 2E-19 150.6 12.5 157 650-842 17-178 (186)
201 3dz8_A RAS-related protein RAB 99.6 2.4E-15 8.3E-20 154.3 9.5 158 651-842 23-184 (191)
202 1kao_A RAP2A; GTP-binding prot 99.6 5.1E-15 1.7E-19 147.6 11.6 155 650-841 2-163 (167)
203 2o52_A RAS-related protein RAB 99.6 1.4E-15 4.9E-20 157.3 7.8 118 5-142 22-143 (200)
204 3con_A GTPase NRAS; structural 99.6 1.5E-14 5.2E-19 148.0 15.3 115 8-143 21-140 (190)
205 2fu5_C RAS-related protein RAB 99.6 1.8E-15 6.1E-20 153.9 8.1 156 651-842 8-169 (183)
206 1zbd_A Rabphilin-3A; G protein 99.6 3.5E-15 1.2E-19 154.6 10.4 156 651-840 8-167 (203)
207 2wjg_A FEOB, ferrous iron tran 99.6 5.3E-15 1.8E-19 151.1 11.5 112 7-142 6-125 (188)
208 1z2a_A RAS-related protein RAB 99.6 2.8E-15 9.5E-20 149.9 9.1 155 651-841 5-164 (168)
209 3lxw_A GTPase IMAP family memb 99.6 1.5E-14 5E-19 154.7 15.3 122 7-149 20-159 (247)
210 1c1y_A RAS-related protein RAP 99.6 4.1E-15 1.4E-19 148.5 10.3 158 650-841 2-164 (167)
211 2j0v_A RAC-like GTP-binding pr 99.6 9.8E-15 3.3E-19 152.4 13.5 117 6-143 7-127 (212)
212 3b1v_A Ferrous iron uptake tra 99.6 2.8E-15 9.7E-20 162.0 9.6 111 7-142 2-120 (272)
213 1upt_A ARL1, ADP-ribosylation 99.6 6.8E-15 2.3E-19 147.6 11.8 156 651-842 7-167 (171)
214 2gf9_A RAS-related protein RAB 99.6 1.7E-15 5.7E-20 155.2 7.3 158 651-842 22-183 (189)
215 2erx_A GTP-binding protein DI- 99.6 1E-14 3.4E-19 146.3 12.8 157 652-843 4-166 (172)
216 3reg_A RHO-like small GTPase; 99.6 1.1E-14 3.9E-19 149.6 13.5 117 6-143 21-141 (194)
217 2oil_A CATX-8, RAS-related pro 99.6 3.8E-15 1.3E-19 153.0 9.8 158 650-841 24-185 (193)
218 2bme_A RAB4A, RAS-related prot 99.6 5.3E-15 1.8E-19 150.8 10.7 156 651-842 10-171 (186)
219 3llu_A RAS-related GTP-binding 99.6 1.6E-14 5.5E-19 148.8 14.5 161 650-841 19-194 (196)
220 1z06_A RAS-related protein RAB 99.6 6.4E-15 2.2E-19 150.8 11.2 161 649-842 18-186 (189)
221 3clv_A RAB5 protein, putative; 99.6 1.2E-14 4.2E-19 150.3 13.2 107 714-841 93-201 (208)
222 1u8z_A RAS-related protein RAL 99.6 1.1E-14 3.6E-19 145.4 12.2 156 649-841 2-164 (168)
223 1xzp_A Probable tRNA modificat 99.6 7.4E-15 2.5E-19 170.8 12.6 112 9-143 244-364 (482)
224 2qu8_A Putative nucleolar GTP- 99.6 5.6E-14 1.9E-18 148.5 18.4 116 6-143 27-156 (228)
225 2hup_A RAS-related protein RAB 99.6 1.1E-14 3.8E-19 150.7 12.7 157 651-842 29-191 (201)
226 3t1o_A Gliding protein MGLA; G 99.6 3.5E-15 1.2E-19 153.6 8.8 169 649-842 12-190 (198)
227 1x3s_A RAS-related protein RAB 99.6 5.2E-15 1.8E-19 152.0 10.0 159 649-842 13-176 (195)
228 1f6b_A SAR1; gtpases, N-termin 99.6 6.7E-15 2.3E-19 152.0 10.8 158 649-842 23-197 (198)
229 4dkx_A RAS-related protein RAB 99.6 1.1E-14 3.9E-19 151.8 12.6 114 9-142 14-131 (216)
230 3lvq_E ARF-GAP with SH3 domain 99.6 1.5E-14 5.2E-19 171.4 15.3 113 7-144 321-438 (497)
231 3bc1_A RAS-related protein RAB 99.6 8.5E-15 2.9E-19 150.1 11.4 157 650-842 10-183 (195)
232 3tw8_B RAS-related protein RAB 99.6 4E-15 1.4E-19 150.7 8.8 156 651-842 9-169 (181)
233 2qu8_A Putative nucleolar GTP- 99.6 1.9E-14 6.3E-19 152.2 14.2 162 650-842 28-203 (228)
234 1wms_A RAB-9, RAB9, RAS-relate 99.6 1.1E-14 3.6E-19 147.1 11.8 157 650-842 6-172 (177)
235 2a5j_A RAS-related protein RAB 99.6 4.4E-15 1.5E-19 152.3 9.1 159 649-841 19-181 (191)
236 3l0i_B RAS-related protein RAB 99.6 2.4E-16 8.4E-21 162.9 -0.5 118 5-142 30-151 (199)
237 1z08_A RAS-related protein RAB 99.6 4.2E-15 1.5E-19 148.9 8.5 156 651-842 6-167 (170)
238 2f7s_A C25KG, RAS-related prot 99.6 5.3E-15 1.8E-19 155.0 9.6 157 650-842 24-197 (217)
239 2fv8_A H6, RHO-related GTP-bin 99.6 8.3E-15 2.8E-19 152.4 11.0 172 638-842 12-198 (207)
240 2g6b_A RAS-related protein RAB 99.6 4.9E-15 1.7E-19 150.0 9.0 158 650-842 9-172 (180)
241 1m2o_B GTP-binding protein SAR 99.6 9.9E-15 3.4E-19 149.6 11.3 156 650-841 22-189 (190)
242 2atv_A RERG, RAS-like estrogen 99.6 2E-14 7E-19 148.0 13.7 115 6-142 26-145 (196)
243 2gco_A H9, RHO-related GTP-bin 99.6 2.4E-14 8.4E-19 148.1 14.4 116 7-144 24-144 (201)
244 2fh5_B SR-beta, signal recogni 99.6 1.5E-14 5.2E-19 151.2 12.8 164 650-840 6-212 (214)
245 3b1v_A Ferrous iron uptake tra 99.6 2.3E-15 7.7E-20 162.8 6.5 152 652-843 4-163 (272)
246 2ew1_A RAS-related protein RAB 99.6 6.3E-15 2.2E-19 152.5 9.6 157 650-842 25-187 (201)
247 2fv8_A H6, RHO-related GTP-bin 99.6 1.9E-14 6.6E-19 149.6 13.4 115 8-143 25-143 (207)
248 2gj8_A MNME, tRNA modification 99.5 1.1E-14 3.7E-19 146.7 10.9 150 652-843 5-165 (172)
249 3bwd_D RAC-like GTP-binding pr 99.5 3.2E-15 1.1E-19 151.7 7.0 163 649-842 6-179 (182)
250 3gj0_A GTP-binding nuclear pro 99.5 1.4E-15 4.8E-20 160.0 4.5 160 647-842 11-173 (221)
251 2q3h_A RAS homolog gene family 99.5 1E-14 3.5E-19 150.8 10.8 118 5-143 17-138 (201)
252 1gwn_A RHO-related GTP-binding 99.5 2.3E-14 7.9E-19 148.8 13.5 118 5-143 25-146 (205)
253 3kkq_A RAS-related protein M-R 99.5 7.6E-15 2.6E-19 149.2 9.6 157 648-841 15-179 (183)
254 2o52_A RAS-related protein RAB 99.5 8.5E-15 2.9E-19 151.4 10.1 157 650-842 24-186 (200)
255 1g16_A RAS-related protein SEC 99.5 6.8E-15 2.3E-19 147.3 9.0 154 652-842 4-163 (170)
256 3geh_A MNME, tRNA modification 99.5 4.4E-15 1.5E-19 171.9 8.5 112 9-143 225-344 (462)
257 2wjg_A FEOB, ferrous iron tran 99.5 4.5E-15 1.5E-19 151.6 7.6 157 648-843 4-168 (188)
258 1moz_A ARL1, ADP-ribosylation 99.5 1.1E-14 3.9E-19 147.8 10.0 158 649-842 16-178 (183)
259 3q72_A GTP-binding protein RAD 99.5 2.3E-14 7.9E-19 143.0 12.0 154 652-841 3-161 (166)
260 4djt_A GTP-binding nuclear pro 99.5 5.7E-15 2E-19 154.9 7.9 159 650-842 10-173 (218)
261 1m7b_A RND3/RHOE small GTP-bin 99.5 3.4E-14 1.2E-18 144.7 13.4 117 6-143 5-125 (184)
262 2a9k_A RAS-related protein RAL 99.5 2.7E-14 9.2E-19 145.4 12.3 158 648-842 15-179 (187)
263 3ihw_A Centg3; RAS, centaurin, 99.5 1.2E-13 4.1E-18 140.7 17.1 110 6-142 18-132 (184)
264 2fn4_A P23, RAS-related protei 99.5 9.3E-15 3.2E-19 148.0 8.8 157 649-842 7-170 (181)
265 2atx_A Small GTP binding prote 99.5 8.4E-15 2.9E-19 150.5 8.5 159 650-841 17-190 (194)
266 2nzj_A GTP-binding protein REM 99.5 1.7E-14 5.9E-19 145.2 10.6 157 651-842 4-167 (175)
267 2yc2_C IFT27, small RAB-relate 99.5 9.5E-15 3.3E-19 151.7 8.9 119 7-143 19-146 (208)
268 3t5g_A GTP-binding protein RHE 99.5 5.2E-15 1.8E-19 150.2 6.6 156 650-842 5-167 (181)
269 1ky3_A GTP-binding protein YPT 99.5 1E-14 3.4E-19 147.9 8.7 158 650-841 7-175 (182)
270 3cbq_A GTP-binding protein REM 99.5 6.7E-14 2.3E-18 144.0 14.8 119 5-143 20-144 (195)
271 2gf0_A GTP-binding protein DI- 99.5 3.6E-14 1.2E-18 146.3 12.8 158 650-843 7-170 (199)
272 3cph_A RAS-related protein SEC 99.5 1.5E-14 5.1E-19 151.0 10.0 155 651-842 20-180 (213)
273 3q85_A GTP-binding protein REM 99.5 1.8E-14 6.3E-19 144.2 10.1 154 652-841 3-164 (169)
274 2gco_A H9, RHO-related GTP-bin 99.5 1.7E-14 6E-19 149.2 10.2 158 650-840 24-196 (201)
275 3q3j_B RHO-related GTP-binding 99.5 4.7E-14 1.6E-18 147.5 13.5 116 7-143 26-145 (214)
276 2j1l_A RHO-related GTP-binding 99.5 4.9E-14 1.7E-18 147.4 13.6 117 7-144 33-153 (214)
277 3oes_A GTPase rhebl1; small GT 99.5 4.9E-15 1.7E-19 153.3 5.9 159 649-842 22-185 (201)
278 2bov_A RAla, RAS-related prote 99.5 3.7E-14 1.3E-18 147.1 12.5 159 647-842 10-175 (206)
279 3r7w_A Gtpase1, GTP-binding pr 99.5 1.1E-13 3.8E-18 152.8 17.0 148 652-817 4-166 (307)
280 1vg8_A RAS-related protein RAB 99.5 1E-14 3.5E-19 151.5 8.2 157 650-842 7-173 (207)
281 2j0v_A RAC-like GTP-binding pr 99.5 7.7E-15 2.6E-19 153.2 7.3 161 649-842 7-178 (212)
282 3c5c_A RAS-like protein 12; GD 99.5 9.2E-14 3.2E-18 141.9 15.1 115 6-142 19-140 (187)
283 3reg_A RHO-like small GTPase; 99.5 5.6E-15 1.9E-19 151.9 5.9 160 649-842 21-186 (194)
284 2x77_A ADP-ribosylation factor 99.5 1.9E-14 6.4E-19 147.2 9.7 157 650-842 21-182 (189)
285 4dsu_A GTPase KRAS, isoform 2B 99.5 3.8E-14 1.3E-18 144.6 12.0 154 651-842 4-164 (189)
286 2bcg_Y Protein YP2, GTP-bindin 99.5 1E-14 3.5E-19 151.5 7.7 156 651-842 8-169 (206)
287 2j1l_A RHO-related GTP-binding 99.5 7.2E-14 2.5E-18 146.1 13.8 161 649-842 32-207 (214)
288 2yc2_C IFT27, small RAB-relate 99.5 1.2E-14 3.9E-19 151.1 7.6 157 650-840 19-188 (208)
289 3gee_A MNME, tRNA modification 99.5 1.7E-14 5.9E-19 167.6 9.6 154 652-843 234-397 (476)
290 2ce2_X GTPase HRAS; signaling 99.5 6.2E-14 2.1E-18 139.4 12.4 153 651-841 3-162 (166)
291 2iwr_A Centaurin gamma 1; ANK 99.5 2.3E-13 7.9E-18 137.5 16.8 108 7-142 6-121 (178)
292 3cpj_B GTP-binding protein YPT 99.5 1.5E-14 5.2E-19 152.3 7.8 157 651-843 13-175 (223)
293 3l0i_B RAS-related protein RAB 99.5 1.7E-15 5.7E-20 156.6 0.2 158 650-843 32-195 (199)
294 3con_A GTPase NRAS; structural 99.5 6.7E-14 2.3E-18 143.2 12.1 160 645-842 15-181 (190)
295 3q3j_B RHO-related GTP-binding 99.5 1.8E-14 6.1E-19 150.7 7.8 163 649-842 25-201 (214)
296 3r7w_A Gtpase1, GTP-binding pr 99.5 1.7E-13 5.7E-18 151.4 15.9 116 8-143 3-129 (307)
297 3o47_A ADP-ribosylation factor 99.5 5.5E-14 1.9E-18 156.7 12.1 157 650-842 164-325 (329)
298 3t5d_A Septin-7; GTP-binding p 99.5 9.4E-14 3.2E-18 151.0 13.1 205 7-229 7-268 (274)
299 1xzp_A Probable tRNA modificat 99.5 5.7E-14 1.9E-18 163.3 11.9 151 652-842 244-403 (482)
300 3ihw_A Centg3; RAS, centaurin, 99.5 4.4E-14 1.5E-18 143.9 9.6 156 646-841 15-177 (184)
301 3cbq_A GTP-binding protein REM 99.5 6.9E-14 2.4E-18 143.9 11.1 157 651-843 23-187 (195)
302 1m7b_A RND3/RHOE small GTP-bin 99.5 5.3E-14 1.8E-18 143.3 10.0 160 650-840 6-179 (184)
303 3c5c_A RAS-like protein 12; GD 99.5 5.7E-14 1.9E-18 143.5 10.2 158 648-841 18-183 (187)
304 2p67_A LAO/AO transport system 99.5 1.3E-14 4.5E-19 162.6 5.9 173 76-274 148-329 (341)
305 2cxx_A Probable GTP-binding pr 99.5 5.7E-14 2E-18 143.5 10.0 122 9-157 2-149 (190)
306 2xtp_A GTPase IMAP family memb 99.5 1.5E-13 5.1E-18 148.4 13.1 165 649-843 20-207 (260)
307 2q3h_A RAS homolog gene family 99.5 1.2E-13 4.2E-18 142.6 11.9 160 650-842 19-193 (201)
308 3lxx_A GTPase IMAP family memb 99.5 2.7E-14 9.2E-19 152.1 6.5 143 4-167 25-191 (239)
309 1gwn_A RHO-related GTP-binding 99.5 8.8E-14 3E-18 144.3 9.8 160 650-840 27-200 (205)
310 1lnz_A SPO0B-associated GTP-bi 99.5 3.9E-14 1.3E-18 157.6 7.5 115 8-143 158-288 (342)
311 2atv_A RERG, RAS-like estrogen 99.5 1.7E-13 5.7E-18 141.1 11.2 158 649-842 26-189 (196)
312 2zej_A Dardarin, leucine-rich 99.5 2.2E-13 7.5E-18 138.7 11.9 165 652-842 3-176 (184)
313 2iwr_A Centaurin gamma 1; ANK 99.5 1.3E-13 4.5E-18 139.3 10.1 153 649-841 5-166 (178)
314 3th5_A RAS-related C3 botulinu 99.2 5.8E-15 2E-19 153.1 0.0 117 6-143 28-148 (204)
315 1jwy_B Dynamin A GTPase domain 99.4 1.1E-13 3.8E-18 153.9 10.0 137 7-144 23-213 (315)
316 2cxx_A Probable GTP-binding pr 99.4 2.6E-13 8.8E-18 138.6 12.0 153 652-842 2-182 (190)
317 3t5d_A Septin-7; GTP-binding p 99.4 2.3E-13 7.9E-18 147.9 12.1 166 651-843 8-203 (274)
318 3th5_A RAS-related C3 botulinu 99.2 7.5E-15 2.6E-19 152.3 0.0 159 649-840 28-201 (204)
319 3lxw_A GTPase IMAP family memb 99.4 3.4E-13 1.2E-17 144.1 12.8 167 649-843 19-207 (247)
320 2aka_B Dynamin-1; fusion prote 99.4 2.8E-13 9.5E-18 149.4 12.4 135 6-143 24-206 (299)
321 1lnz_A SPO0B-associated GTP-bi 99.4 6.3E-14 2.1E-18 156.0 6.9 154 652-843 159-329 (342)
322 2g3y_A GTP-binding protein GEM 99.4 3.5E-13 1.2E-17 140.1 11.4 118 6-142 35-158 (211)
323 3lvq_E ARF-GAP with SH3 domain 99.4 3.3E-13 1.1E-17 159.8 12.4 158 650-843 321-483 (497)
324 2qtf_A Protein HFLX, GTP-bindi 99.4 1.6E-12 5.5E-17 146.2 16.0 116 7-144 178-307 (364)
325 2wkq_A NPH1-1, RAS-related C3 99.4 9.9E-13 3.4E-17 147.2 13.9 117 6-143 153-273 (332)
326 3geh_A MNME, tRNA modification 99.4 1.3E-13 4.4E-18 159.7 6.7 151 652-843 225-383 (462)
327 2qtf_A Protein HFLX, GTP-bindi 99.4 1.1E-12 3.6E-17 147.6 13.1 158 653-843 181-353 (364)
328 2wkq_A NPH1-1, RAS-related C3 99.4 4.8E-13 1.6E-17 149.8 10.1 158 652-842 156-328 (332)
329 2cjw_A GTP-binding protein GEM 99.4 1E-12 3.6E-17 134.7 11.6 117 7-142 5-127 (192)
330 3r7w_B Gtpase2, GTP-binding pr 99.4 1.4E-12 4.7E-17 142.2 12.9 144 655-816 3-158 (331)
331 2zej_A Dardarin, leucine-rich 99.4 8.6E-13 3E-17 134.3 10.3 119 9-143 3-126 (184)
332 2e87_A Hypothetical protein PH 99.4 2.4E-12 8.2E-17 145.4 13.9 115 6-142 165-293 (357)
333 3def_A T7I23.11 protein; chlor 99.4 2.2E-12 7.5E-17 139.2 12.9 115 7-142 35-164 (262)
334 3lxx_A GTPase IMAP family memb 99.4 2.3E-12 8E-17 137.1 12.4 166 650-842 28-212 (239)
335 2f9l_A RAB11B, member RAS onco 99.4 1.7E-12 5.9E-17 133.8 10.6 117 6-142 3-123 (199)
336 3dpu_A RAB family protein; roc 99.3 6.8E-13 2.3E-17 158.3 6.9 120 6-143 39-164 (535)
337 1pui_A ENGB, probable GTP-bind 99.3 1.8E-11 6.2E-16 127.2 16.2 160 650-842 25-197 (210)
338 3dpu_A RAB family protein; roc 99.3 5.2E-13 1.8E-17 159.3 4.7 159 648-842 38-206 (535)
339 1nrj_B SR-beta, signal recogni 99.3 5.4E-12 1.8E-16 132.1 11.6 115 5-145 9-136 (218)
340 2e87_A Hypothetical protein PH 99.3 7E-12 2.4E-16 141.6 13.0 155 650-842 166-334 (357)
341 2g3y_A GTP-binding protein GEM 99.3 5.5E-12 1.9E-16 131.1 11.2 157 651-842 37-201 (211)
342 1pui_A ENGB, probable GTP-bind 99.3 1.2E-11 3.9E-16 128.7 13.5 115 5-142 23-150 (210)
343 1oix_A RAS-related protein RAB 99.3 5.7E-12 2E-16 129.0 11.0 118 5-142 26-147 (191)
344 2qag_A Septin-2, protein NEDD5 99.3 7.3E-12 2.5E-16 141.1 12.0 124 8-143 37-188 (361)
345 1h65_A Chloroplast outer envel 99.3 2.1E-11 7.2E-16 132.1 15.2 124 7-151 38-179 (270)
346 3p32_A Probable GTPase RV1496/ 99.3 2.9E-12 1E-16 144.4 7.8 131 5-142 76-230 (355)
347 2j69_A Bacterial dynamin-like 99.3 8.4E-12 2.9E-16 152.3 12.1 66 77-142 174-243 (695)
348 2aka_B Dynamin-1; fusion prote 99.3 6.3E-12 2.2E-16 138.5 9.6 164 649-818 24-238 (299)
349 1nrj_B SR-beta, signal recogni 99.3 3.1E-12 1E-16 134.0 6.6 143 650-818 11-169 (218)
350 1jwy_B Dynamin A GTPase domain 99.3 5E-12 1.7E-16 140.5 8.3 118 712-843 129-261 (315)
351 2ged_A SR-beta, signal recogni 99.3 7.1E-12 2.4E-16 128.3 8.7 126 6-157 46-185 (193)
352 2wsm_A Hydrogenase expression/ 99.3 5.3E-12 1.8E-16 132.4 7.9 128 6-142 28-167 (221)
353 2f9l_A RAB11B, member RAS onco 99.3 9.1E-12 3.1E-16 128.4 9.5 155 651-841 5-165 (199)
354 2j69_A Bacterial dynamin-like 99.3 2.2E-11 7.6E-16 148.6 14.4 128 714-842 174-323 (695)
355 3r7w_B Gtpase2, GTP-binding pr 99.3 3.3E-11 1.1E-15 131.3 14.0 112 10-144 1-121 (331)
356 1wxq_A GTP-binding protein; st 99.3 3E-12 1E-16 145.6 6.0 86 10-113 2-114 (397)
357 2cjw_A GTP-binding protein GEM 99.2 1.2E-11 4.3E-16 126.6 10.0 157 651-842 6-170 (192)
358 2qpt_A EH domain-containing pr 99.2 1.9E-11 6.4E-16 145.0 12.4 138 4-143 61-232 (550)
359 2x2e_A Dynamin-1; nitration, h 99.2 1.3E-11 4.3E-16 139.2 8.9 134 7-143 30-211 (353)
360 3def_A T7I23.11 protein; chlor 99.2 1.9E-11 6.4E-16 131.9 9.4 118 649-781 34-165 (262)
361 3c5h_A Glucocorticoid receptor 99.2 6.4E-12 2.2E-16 134.9 5.3 43 100-142 162-211 (255)
362 2qag_A Septin-2, protein NEDD5 99.2 1.6E-11 5.6E-16 138.2 8.7 170 651-843 37-236 (361)
363 1h65_A Chloroplast outer envel 99.2 4.8E-11 1.6E-15 129.3 12.0 116 650-781 38-168 (270)
364 1wxq_A GTP-binding protein; st 99.2 1.8E-11 6.1E-16 139.2 8.8 82 653-750 2-114 (397)
365 3zvr_A Dynamin-1; hydrolase, D 99.2 4.4E-11 1.5E-15 144.2 11.1 134 7-143 50-231 (772)
366 1udx_A The GTP-binding protein 99.2 8.8E-11 3E-15 133.6 12.2 115 8-143 157-283 (416)
367 1oix_A RAS-related protein RAB 99.1 7.6E-11 2.6E-15 120.6 9.8 154 651-840 29-188 (191)
368 2ged_A SR-beta, signal recogni 99.1 1.5E-11 5.2E-16 125.8 4.2 111 650-781 47-170 (193)
369 3c5h_A Glucocorticoid receptor 99.1 1.6E-11 5.6E-16 131.7 3.6 84 737-841 162-252 (255)
370 2x2e_A Dynamin-1; nitration, h 99.1 1.8E-10 6.3E-15 129.7 9.7 165 648-818 28-243 (353)
371 1udx_A The GTP-binding protein 99.1 5.3E-10 1.8E-14 127.2 12.7 154 652-843 158-324 (416)
372 2qpt_A EH domain-containing pr 99.1 2.9E-10 1E-14 134.8 10.6 131 651-782 65-233 (550)
373 3t34_A Dynamin-related protein 99.0 8.2E-10 2.8E-14 124.8 13.4 137 7-144 33-218 (360)
374 1yrb_A ATP(GTP)binding protein 99.0 1.1E-09 3.8E-14 117.9 13.8 67 76-143 108-185 (262)
375 3p32_A Probable GTPase RV1496/ 99.0 1.3E-10 4.4E-15 130.9 6.2 113 710-842 168-282 (355)
376 2www_A Methylmalonic aciduria 99.0 4.5E-10 1.5E-14 125.8 10.5 60 76-142 166-225 (349)
377 4a9a_A Ribosome-interacting GT 99.0 1.8E-09 6E-14 120.8 14.7 113 8-143 72-196 (376)
378 2p67_A LAO/AO transport system 99.0 3.9E-10 1.3E-14 126.2 8.5 112 711-842 146-259 (341)
379 3zvr_A Dynamin-1; hydrolase, D 99.0 2.3E-10 8E-15 138.0 5.6 165 648-818 48-263 (772)
380 4a9a_A Ribosome-interacting GT 98.9 5.7E-10 1.9E-14 124.7 7.0 111 652-780 73-195 (376)
381 1xe1_A Hypothetical protein PF 98.9 7.1E-09 2.4E-13 92.6 12.2 81 850-936 32-112 (116)
382 2j37_W Signal recognition part 98.9 4.7E-10 1.6E-14 130.3 5.8 146 6-160 99-269 (504)
383 2www_A Methylmalonic aciduria 98.9 2E-09 6.7E-14 120.6 9.8 112 711-842 164-277 (349)
384 1jal_A YCHF protein; nucleotid 98.9 1.2E-08 4E-13 113.5 15.9 86 9-112 3-108 (363)
385 3t34_A Dynamin-related protein 98.9 8.6E-10 2.9E-14 124.6 6.4 97 713-818 135-246 (360)
386 2qag_C Septin-7; cell cycle, c 98.9 7E-09 2.4E-13 118.1 12.1 121 9-142 32-180 (418)
387 2qnr_A Septin-2, protein NEDD5 98.8 7E-09 2.4E-13 113.7 10.7 122 9-142 19-168 (301)
388 2wsm_A Hydrogenase expression/ 98.8 2.7E-09 9.1E-14 111.7 5.7 163 651-842 30-212 (221)
389 1jal_A YCHF protein; nucleotid 98.8 5.4E-09 1.8E-13 116.2 8.1 82 652-749 3-108 (363)
390 2dby_A GTP-binding protein; GD 98.8 1.3E-07 4.5E-12 105.7 18.6 86 9-112 2-111 (368)
391 2qag_C Septin-7; cell cycle, c 98.7 2E-08 6.9E-13 114.2 10.3 150 651-817 31-211 (418)
392 2qnr_A Septin-2, protein NEDD5 98.7 1.9E-08 6.4E-13 110.3 8.7 152 651-817 18-199 (301)
393 1yrb_A ATP(GTP)binding protein 98.7 3.8E-08 1.3E-12 105.8 10.9 112 714-842 109-255 (262)
394 2qm8_A GTPase/ATPase; G protei 98.7 3.7E-08 1.3E-12 109.6 10.1 60 76-142 147-206 (337)
395 2dby_A GTP-binding protein; GD 98.7 6.2E-08 2.1E-12 108.4 11.8 82 652-749 2-111 (368)
396 2hf9_A Probable hydrogenase ni 98.7 3.4E-08 1.2E-12 103.5 9.0 128 6-142 36-177 (226)
397 1cip_A Protein (guanine nucleo 98.6 3.8E-08 1.3E-12 109.8 8.8 130 700-841 179-341 (353)
398 2xxa_A Signal recognition part 98.6 1.9E-07 6.6E-12 106.9 14.3 225 6-250 98-346 (433)
399 2qm8_A GTPase/ATPase; G protei 98.6 6.8E-08 2.3E-12 107.5 7.5 112 711-841 145-258 (337)
400 1zcb_A G alpha I/13; GTP-bindi 98.6 9.8E-08 3.4E-12 106.8 8.8 129 701-841 188-350 (362)
401 1cip_A Protein (guanine nucleo 98.5 1.1E-07 3.7E-12 106.0 8.8 82 57-142 177-273 (353)
402 1zcb_A G alpha I/13; GTP-bindi 98.4 2.6E-07 8.8E-12 103.4 8.2 80 59-142 187-281 (362)
403 3kl4_A SRP54, signal recogniti 98.4 1.7E-06 5.9E-11 98.4 14.1 217 7-249 96-344 (433)
404 3ec1_A YQEH GTPase; atnos1, at 98.4 3.3E-08 1.1E-12 111.5 -0.6 132 9-159 163-305 (369)
405 2v3c_C SRP54, signal recogniti 98.4 3.9E-07 1.3E-11 104.4 7.7 226 7-258 98-353 (432)
406 4fid_A G protein alpha subunit 98.4 1.1E-06 3.8E-11 96.6 11.0 83 698-781 145-242 (340)
407 3ohm_A Guanine nucleotide-bind 98.4 1.1E-06 3.8E-11 96.4 10.6 131 699-841 152-315 (327)
408 1azs_C GS-alpha; complex (lyas 98.4 1.3E-06 4.4E-11 98.4 11.3 80 701-781 204-298 (402)
409 2qag_B Septin-6, protein NEDD5 98.3 1.6E-06 5.4E-11 98.2 11.8 135 7-158 41-206 (427)
410 2qag_B Septin-6, protein NEDD5 98.3 1.1E-06 3.7E-11 99.5 10.2 134 653-801 44-209 (427)
411 1tq4_A IIGP1, interferon-induc 98.3 8.4E-06 2.9E-10 92.3 16.1 113 9-141 70-187 (413)
412 2ohf_A Protein OLA1, GTP-bindi 98.3 4.3E-07 1.5E-11 101.8 5.4 83 651-749 22-128 (396)
413 3h2y_A GTPase family protein; 98.3 1.2E-07 3.9E-12 106.9 0.8 133 9-160 161-305 (368)
414 3sop_A Neuronal-specific septi 98.3 3.4E-06 1.2E-10 90.5 12.2 137 9-157 3-169 (270)
415 2ohf_A Protein OLA1, GTP-bindi 98.3 7.4E-07 2.5E-11 99.9 6.9 87 8-112 22-128 (396)
416 1u0l_A Probable GTPase ENGC; p 98.3 6.9E-07 2.4E-11 97.8 6.2 103 715-839 64-168 (301)
417 4fid_A G protein alpha subunit 98.2 1.3E-06 4.6E-11 96.0 7.5 82 57-142 145-241 (340)
418 2j37_W Signal recognition part 98.2 6.7E-07 2.3E-11 103.9 5.3 127 651-781 101-254 (504)
419 2xtz_A Guanine nucleotide-bind 98.2 2.5E-06 8.4E-11 95.0 8.5 68 713-781 182-264 (354)
420 3ohm_A Guanine nucleotide-bind 98.2 2.5E-06 8.4E-11 93.6 8.2 82 57-142 151-247 (327)
421 3e1y_E Eukaryotic peptide chai 98.1 2.8E-06 9.6E-11 86.9 7.4 85 294-384 3-91 (204)
422 1azs_C GS-alpha; complex (lyas 98.1 1.1E-06 3.9E-11 98.8 3.9 79 60-142 204-297 (402)
423 3dm5_A SRP54, signal recogniti 98.1 7.4E-05 2.5E-09 84.9 18.3 150 7-160 99-268 (443)
424 3sop_A Neuronal-specific septi 98.1 1.1E-05 3.6E-10 86.7 10.8 143 651-801 2-173 (270)
425 1u0l_A Probable GTPase ENGC; p 98.1 3.2E-06 1.1E-10 92.5 6.6 63 78-142 64-128 (301)
426 2hf9_A Probable hydrogenase ni 98.1 3E-06 1E-10 88.6 5.8 101 715-841 120-221 (226)
427 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 8.4E-06 2.9E-10 91.7 9.6 89 7-112 19-127 (392)
428 3l82_B F-box only protein 4; T 98.0 1.1E-05 3.8E-10 80.9 8.9 59 86-144 111-178 (227)
429 2xtz_A Guanine nucleotide-bind 98.0 5.6E-06 1.9E-10 92.1 7.3 68 75-142 181-263 (354)
430 3l82_B F-box only protein 4; T 97.9 3.6E-05 1.2E-09 77.3 10.5 105 721-843 109-222 (227)
431 4dzz_A Plasmid partitioning pr 97.9 4.2E-05 1.4E-09 78.4 10.7 148 9-161 2-161 (206)
432 1tq4_A IIGP1, interferon-induc 97.9 8.7E-05 3E-09 84.0 13.7 166 652-844 70-253 (413)
433 1puj_A YLQF, conserved hypothe 97.9 1.6E-05 5.3E-10 85.9 7.1 60 82-143 4-64 (282)
434 1ni3_A YCHF GTPase, YCHF GTP-b 97.8 1.4E-05 4.9E-10 89.8 6.6 83 651-749 20-127 (392)
435 1puj_A YLQF, conserved hypothe 97.8 3.7E-05 1.2E-09 83.0 9.3 100 718-841 3-103 (282)
436 1j8m_F SRP54, signal recogniti 97.8 2.9E-05 1E-09 84.3 7.7 148 8-160 98-268 (297)
437 1d1n_A Initiation factor 2; be 97.7 4E-05 1.4E-09 66.6 6.1 81 854-936 8-89 (99)
438 2yv5_A YJEQ protein; hydrolase 97.7 3E-05 1E-09 84.7 6.0 56 87-142 66-123 (302)
439 3ec1_A YQEH GTPase; atnos1, at 97.7 5.8E-05 2E-09 84.9 8.0 105 719-840 54-158 (369)
440 3l2o_B F-box only protein 4; s 97.7 0.00012 4.1E-09 77.2 9.6 61 84-144 194-263 (312)
441 2yv5_A YJEQ protein; hydrolase 97.6 0.00013 4.3E-09 79.8 9.9 87 724-818 66-154 (302)
442 1f5n_A Interferon-induced guan 97.6 4.6E-05 1.6E-09 89.9 6.8 104 6-128 36-148 (592)
443 3h2y_A GTPase family protein; 97.6 5.7E-05 1.9E-09 84.9 7.1 100 723-840 55-156 (368)
444 2crv_A IF-2MT, translation ini 97.6 0.00017 5.7E-09 65.0 8.2 81 854-936 12-97 (120)
445 3l2o_B F-box only protein 4; s 97.5 0.00022 7.4E-09 75.2 8.3 105 721-843 194-307 (312)
446 3cnl_A YLQF, putative uncharac 97.5 7.4E-05 2.5E-09 79.7 4.9 94 721-841 4-98 (262)
447 3cwq_A Para family chromosome 97.4 0.00014 4.7E-09 74.9 6.5 141 11-160 3-151 (209)
448 3cnl_A YLQF, putative uncharac 97.4 8.8E-05 3E-09 79.1 4.3 55 85-143 5-60 (262)
449 1f5n_A Interferon-induced guan 97.3 8.1E-05 2.8E-09 87.8 2.5 101 650-765 37-148 (592)
450 2ph1_A Nucleotide-binding prot 97.2 0.0011 3.9E-08 70.6 11.0 92 75-167 127-227 (262)
451 3dm5_A SRP54, signal recogniti 97.1 0.00058 2E-08 77.6 7.2 126 651-781 100-253 (443)
452 3szr_A Interferon-induced GTP- 97.0 0.0018 6.1E-08 77.6 11.3 68 77-144 147-229 (608)
453 2v3c_C SRP54, signal recogniti 97.0 0.00086 2.9E-08 76.6 7.9 67 712-781 179-252 (432)
454 3e70_C DPA, signal recognition 97.0 0.00096 3.3E-08 73.3 7.7 148 7-160 128-297 (328)
455 3end_A Light-independent proto 97.0 0.0028 9.4E-08 69.3 11.4 85 76-167 156-245 (307)
456 3kjh_A CO dehydrogenase/acetyl 97.0 0.00083 2.8E-08 70.9 7.0 86 75-167 130-216 (254)
457 1j8m_F SRP54, signal recogniti 97.0 0.0017 5.8E-08 70.4 9.1 67 712-781 179-253 (297)
458 1zu4_A FTSY; GTPase, signal re 97.0 0.0026 8.9E-08 69.7 10.6 82 75-161 190-284 (320)
459 2yhs_A FTSY, cell division pro 97.0 0.0015 5.2E-08 74.8 8.9 147 7-160 292-467 (503)
460 2oze_A ORF delta'; para, walke 96.9 0.00072 2.5E-08 73.6 6.0 83 75-159 153-242 (298)
461 2ffh_A Protein (FFH); SRP54, s 96.9 0.0019 6.5E-08 73.3 8.7 149 7-160 97-266 (425)
462 1t9h_A YLOQ, probable GTPase E 96.8 0.0015 5E-08 70.9 6.8 78 734-818 83-162 (307)
463 1hyq_A MIND, cell division inh 96.8 0.0033 1.1E-07 66.9 9.6 82 76-161 110-192 (263)
464 2px0_A Flagellar biosynthesis 96.7 0.0021 7.3E-08 69.6 7.5 148 7-159 104-267 (296)
465 3kl4_A SRP54, signal recogniti 96.7 0.0013 4.6E-08 74.6 5.8 66 712-781 178-252 (433)
466 1rj9_A FTSY, signal recognitio 96.7 0.0043 1.5E-07 67.4 9.4 147 7-160 101-276 (304)
467 1ls1_A Signal recognition part 96.6 0.0038 1.3E-07 67.6 8.5 149 7-160 97-266 (295)
468 2xj4_A MIPZ; replication, cell 96.6 0.00062 2.1E-08 73.7 2.1 82 76-159 103-212 (286)
469 1xe1_A Hypothetical protein PF 96.6 0.015 5.2E-07 52.0 10.5 62 312-380 48-113 (116)
470 1vma_A Cell division protein F 96.5 0.0026 8.8E-08 69.2 6.3 151 6-161 102-279 (306)
471 3szr_A Interferon-induced GTP- 96.5 0.0052 1.8E-07 73.6 9.6 68 713-781 146-228 (608)
472 3k9g_A PF-32 protein; ssgcid, 96.5 0.0071 2.4E-07 64.5 9.6 78 75-155 143-222 (267)
473 3q5d_A Atlastin-1; G protein, 96.4 0.0094 3.2E-07 67.9 10.6 26 6-31 65-90 (447)
474 2yhs_A FTSY, cell division pro 96.4 0.0037 1.3E-07 71.6 6.7 124 652-780 294-451 (503)
475 3ea0_A ATPase, para family; al 96.2 0.026 9E-07 58.9 12.2 81 76-161 118-201 (245)
476 2xxa_A Signal recognition part 96.1 0.003 1E-07 72.1 4.5 66 712-781 182-254 (433)
477 1t9h_A YLOQ, probable GTPase E 96.0 0.0038 1.3E-07 67.7 4.3 48 97-144 83-132 (307)
478 3cio_A ETK, tyrosine-protein k 95.8 0.0051 1.7E-07 66.8 4.2 66 76-142 213-279 (299)
479 2afh_E Nitrogenase iron protei 95.7 0.049 1.7E-06 58.6 11.8 86 75-162 117-208 (289)
480 3e70_C DPA, signal recognition 95.7 0.0081 2.8E-07 65.9 5.3 125 651-780 129-281 (328)
481 1cp2_A CP2, nitrogenase iron p 95.6 0.034 1.2E-06 59.1 10.0 85 76-162 115-205 (269)
482 2rcn_A Probable GTPase ENGC; Y 95.6 0.037 1.3E-06 61.1 10.1 75 735-818 128-204 (358)
483 3ez9_A Para; DNA binding, wing 95.4 0.018 6.2E-07 65.4 7.1 91 75-168 246-348 (403)
484 3b9q_A Chloroplast SRP recepto 95.3 0.047 1.6E-06 59.1 9.4 147 7-159 99-274 (302)
485 1wcv_1 SOJ, segregation protei 95.2 0.037 1.3E-06 58.5 8.3 85 75-161 110-201 (257)
486 1rj9_A FTSY, signal recognitio 95.0 0.027 9.1E-07 61.1 6.3 126 651-781 102-261 (304)
487 1zu4_A FTSY; GTPase, signal re 94.8 0.02 7E-07 62.5 4.8 67 712-781 190-268 (320)
488 2og2_A Putative signal recogni 94.7 0.065 2.2E-06 59.3 8.6 148 7-160 156-332 (359)
489 2rcn_A Probable GTPase ENGC; Y 94.4 0.077 2.6E-06 58.6 8.2 45 97-143 127-174 (358)
490 1vma_A Cell division protein F 94.3 0.032 1.1E-06 60.5 5.0 66 712-781 185-263 (306)
491 1g3q_A MIND ATPase, cell divis 94.1 0.089 3E-06 54.5 7.9 82 75-160 110-192 (237)
492 2ffh_A Protein (FFH); SRP54, s 93.9 0.038 1.3E-06 62.6 4.5 65 712-780 179-250 (425)
493 3q5d_A Atlastin-1; G protein, 93.9 0.062 2.1E-06 61.1 6.3 26 649-674 65-90 (447)
494 3ez2_A Plasmid partition prote 93.8 0.049 1.7E-06 61.7 5.4 91 75-168 243-345 (398)
495 2px0_A Flagellar biosynthesis 93.7 0.049 1.7E-06 58.8 4.9 67 712-781 181-253 (296)
496 3of5_A Dethiobiotin synthetase 93.6 0.2 6.9E-06 51.7 9.2 87 75-161 109-201 (228)
497 1d1n_A Initiation factor 2; be 93.3 0.11 3.7E-06 45.2 5.4 76 300-379 9-89 (99)
498 3b9q_A Chloroplast SRP recepto 92.9 0.14 4.7E-06 55.4 6.9 126 652-781 101-260 (302)
499 1bif_A 6-phosphofructo-2-kinas 92.8 0.03 1E-06 64.9 1.6 105 8-135 39-155 (469)
500 1byi_A Dethiobiotin synthase; 92.7 0.52 1.8E-05 48.1 10.9 94 75-169 107-206 (224)
No 1
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.4e-128 Score=1188.75 Aligned_cols=659 Identities=47% Similarity=0.838 Sum_probs=600.3
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc---cCceeEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN---KFKYMIN 80 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~---~~~~~i~ 80 (1021)
+.++||||||+||+|||||||+++|++++|.+.+.|+++++.+++|++++|++|||||+++.+++.|+.. ..+|.||
T Consensus 9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 6799999999999999999999999999999999999999999999999999999999999999999752 3479999
Q ss_pred EEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCc
Q psy5021 81 IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCI 160 (1021)
Q Consensus 81 liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 160 (1021)
|||||||.||+.++.++|+.+|+||+||||.+|+++||+.+|++|.++++|+++|+||||++++++..+++++++.|+..
T Consensus 89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~~ 168 (709)
T 4fn5_A 89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHT 168 (709)
T ss_dssp EECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCSC
T ss_pred EEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecccCCceeeEEecccceeeeecCCC----eeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCH
Q psy5021 161 VLPINFNIGIEENYEGIVDIINKKSFFWKENS----IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSI 235 (1021)
Q Consensus 161 ~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~ 235 (1021)
+.++++|++.++.|.|++|+++++.++|+++. +...++|.+..+....++..++|.+++.|++++++|+++ +++.
T Consensus 169 ~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~ 248 (709)
T 4fn5_A 169 PVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSE 248 (709)
T ss_dssp EEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCH
T ss_pred eeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccH
Confidence 99999999999999999999999999998653 667889999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC----Ccc----cccc-CCCceEEEEEEEe
Q psy5021 236 NDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN----NDY----NINL-NSNKFVSLVFKIF 306 (1021)
Q Consensus 236 ~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~----~~~----~~~~-~~~p~~~~V~k~~ 306 (1021)
+++...+++.+..+.++|++++||+++.|++.||++|++++|+|.+.+... .+. ...| +++|++++|||+.
T Consensus 249 ~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~ 328 (709)
T 4fn5_A 249 AEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIA 328 (709)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECC
T ss_pred HHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEee
Confidence 999999999999999999999999999999999999999999998876533 111 2244 7899999999999
Q ss_pred ecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCcccc
Q psy5021 307 HDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQ 386 (1021)
Q Consensus 307 ~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~ 386 (1021)
+|++.|+++|+|||||+|++||+|++...++++++.+++.++|++++++++|.|||||+|.|++++.+|||||+...+..
T Consensus 329 ~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~~~gdTl~~~~~~~~ 408 (709)
T 4fn5_A 329 TDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTTGDTLCSIEKPII 408 (709)
T ss_dssp CBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSCCTTCEEECSSSCCB
T ss_pred cccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeecCCCcCccCCEecCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ccCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeC
Q psy5021 387 LENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISK 466 (1021)
Q Consensus 387 ~~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~ 466 (1021)
++++.+|+|+++++|+|.+++|++||.++|++|+++||+|+++.+++|||++|+||||||||||++||+++||+++++|+
T Consensus 409 ~~~~~~~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~gvev~vs~ 488 (709)
T 4fn5_A 409 LERMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFGVEANIGK 488 (709)
T ss_dssp CC----CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTTCCCBCCBC
T ss_pred CCCCCCCCcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHhCceEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeecccc-eeeeeEEEecCCCCceeEEEEEEEeecCC----CCCCCceEEeccccCCCchhhHHHHHHHHHHHHh
Q psy5021 467 PQVSYKESIKKI-VTQEGKYIKQSGGKGQYGHVVIRIEPISL----ENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQIN 541 (1021)
Q Consensus 467 p~V~yrEti~~~-~~~~~~~~~~~~~~~~~~~~~~~~~P~~~----~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~ 541 (1021)
|+|+|||||++. ++.+++|+|+++|++||+.++++++|.+. ..++++.|.+++.++.+|++|+++|++||+||++
T Consensus 489 P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~f~~~~~~~~~p~~~~~~v~~g~~~a~~ 568 (709)
T 4fn5_A 489 PQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFENEVVGGVVPKEYIPAIQKGIEEQMK 568 (709)
T ss_dssp CCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCBCCEEEEEECC-CCSSCGGGHHHHHHHHHHHHH
T ss_pred ceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeeccccccCCCcCceEEecccccccCCHHHHHHHHHHHHHHHh
Confidence 999999999875 56889999999999999999999999752 1467899999999999999999999999999999
Q ss_pred cCcccccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEE
Q psy5021 542 YGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGII 621 (1021)
Q Consensus 542 ~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i 621 (1021)
+||||||||+||+|+|.|+++|+++|++++|+.|+++||++|+.+|+|+||||||.|+|+||++|+|+||++|++|||+|
T Consensus 569 ~G~l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~RRG~i 648 (709)
T 4fn5_A 569 NGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLI 648 (709)
T ss_dssp HCSSSSCCBSEEEEEEEECCCCTTTBCHHHHHHHHHHHHHTHHHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGGTCEE
T ss_pred cCcccCCceeeeEEEEEEccccCCCCChHHHHHHHHHHHHHHHHHCCCEEECceEEEEEEECHHHHHHHHHHHHhcCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 622 NTIIDHENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 622 ~~~~~~~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
.+++..+++.+|+|++|++|++||.++||+.|+|.+.+...
T Consensus 649 ~~~~~~~~~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~ 689 (709)
T 4fn5_A 649 QGMEDTVSGKVIRAEVPLGEMFGYATDVRSMSQGRASYSME 689 (709)
T ss_dssp EEEEECSSEEEEEEEEESGGGTTHHHHHHHHTTTCCEEECC
T ss_pred eceEecCCCEEEEEEecHHHhhCHHHHHHhhCCCeEEEEEE
Confidence 99999999999999999999999999999999999987653
No 2
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=6.7e-124 Score=1140.25 Aligned_cols=657 Identities=48% Similarity=0.822 Sum_probs=626.7
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec---ccCceeEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV---NKFKYMIN 80 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~---~~~~~~i~ 80 (1021)
+.+++|||+|+||+|||||||+++|++.++.+...|+++++.+++||++.|++||+|+.++..++.|.. ++..+.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 578899999999999999999999999999999889999999999999999999999999999999983 23349999
Q ss_pred EEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCc
Q psy5021 81 IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCI 160 (1021)
Q Consensus 81 liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~ 160 (1021)
|||||||.+|..++.++++.+|++|+|+|+++|++.|++.+|+++...++|+++|+||+|+..+++.++++++++.++.+
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~ 165 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGAN 165 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeecccCCceeeEEecccceeeeecC---CC-eeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCH
Q psy5021 161 VLPINFNIGIEENYEGIVDIINKKSFFWKE---NS-IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSI 235 (1021)
Q Consensus 161 ~~~~~~p~~~~~~~~g~id~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~ 235 (1021)
++++++|++.++.|.|++|++.++.++|++ +. +...++|+++.+.+.++|++|+|.+++.||++||+||++ +++.
T Consensus 166 ~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~ 245 (704)
T 2rdo_7 166 PVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTE 245 (704)
T ss_pred ceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCH
Confidence 999999999999999999999999999975 22 666788888899999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC----C-c---ccccc-CCCceEEEEEEEe
Q psy5021 236 NDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN----N-D---YNINL-NSNKFVSLVFKIF 306 (1021)
Q Consensus 236 ~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~----~-~---~~~~~-~~~p~~~~V~k~~ 306 (1021)
+++...+++++..+.++|+||+||++|.|++.||++|++++|+|.+.+..+ . + ....| +++|++++|||++
T Consensus 246 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~ 325 (704)
T 2rdo_7 246 AEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIA 325 (704)
T ss_pred HHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEE
Confidence 999999999999999999999999999999999999999999998754321 0 0 12234 6789999999999
Q ss_pred ecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCcccc
Q psy5021 307 HDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQ 386 (1021)
Q Consensus 307 ~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~ 386 (1021)
+|+++|+++|+|||||+|++||.|++.+.+++++|.+++.++|++++++++|.||||+++.|++++.+|||||+...+..
T Consensus 326 ~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~~~GdTl~~~~~~~~ 405 (704)
T 2rdo_7 326 TDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPII 405 (704)
T ss_pred EcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccCccCCEEeCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred ccCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeC
Q psy5021 387 LENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISK 466 (1021)
Q Consensus 387 ~~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~ 466 (1021)
+++++++.|+++++|+|.++.|++||.++|++|++|||+|++++++||||++|+|||||||||+++||+++||+++.+++
T Consensus 406 l~~~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f~v~v~~~~ 485 (704)
T 2rdo_7 406 LERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGK 485 (704)
T ss_pred cCCCCCCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeecccce-eeeeEEEecCCCCceeEEEEEEEeec---CCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhc
Q psy5021 467 PQVSYKESIKKIV-TQEGKYIKQSGGKGQYGHVVIRIEPI---SLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINY 542 (1021)
Q Consensus 467 p~V~yrEti~~~~-~~~~~~~~~~~~~~~~~~~~~~~~P~---~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~ 542 (1021)
|+|+|||||++++ +..++|+||+||++|||+++++++|+ + +|+|+.|.+++.++.+|++|+++|++||+||+++
T Consensus 486 p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~--~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~ 563 (704)
T 2rdo_7 486 PQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGS--NPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKA 563 (704)
T ss_pred CEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCCCC--CCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhc
Confidence 9999999999988 89999999999999999999999999 7 7899999999999999999999999999999999
Q ss_pred CcccccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEe
Q psy5021 543 GVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIIN 622 (1021)
Q Consensus 543 Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~ 622 (1021)
||||||||+||+|+|+|+++|++||++++|+.|+++||++|+++|+|+||||||.|+|+||++|+|+||++|++|||+|.
T Consensus 564 G~l~g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~ 643 (704)
T 2rdo_7 564 GPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLK 643 (704)
T ss_pred CCcCCCceeeEEEEEEeccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhHHHHHHHhCCceEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 623 TIIDHENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 623 ~~~~~~~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+++..++++.|+|++|++|+++|.++||++|+|.+.+...
T Consensus 644 ~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 683 (704)
T 2rdo_7 644 GQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTME 683 (704)
T ss_pred CceecCCeEEEEEEecHHHHhhHHHHhHhhcCCceEEEEE
Confidence 9999999999999999999999999999999999988764
No 3
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=5.8e-122 Score=1122.92 Aligned_cols=653 Identities=45% Similarity=0.815 Sum_probs=599.6
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+++|||+|+||+|||||||+++|++.++.+...|.++++.+++||.+.|+++|+|+.+...++.|. ++.++|||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~----~~~i~liD 81 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE----GHRVNIID 81 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET----TEEEEEEC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC----CeeEEEEE
Confidence 57889999999999999999999999999998888888889999999999999999999999999998 89999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||.+|..++.++++.+|++|+|+|++++++.++..+|+++...++|+++|+||+|+..+++.++++++++.++.++.+
T Consensus 82 TPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~ 161 (693)
T 2xex_A 82 TPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAP 161 (693)
T ss_dssp CCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEE
T ss_pred CcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCceeeEEecccceeeeec-C--CCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWK-E--NSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIK 239 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~ 239 (1021)
.++|+..+..|.|++|++.++.++|+ + ..+...++|+.+.+.+..+|++++|.+++.||++|++||++ +++.+++.
T Consensus 162 ~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~ 241 (693)
T 2xex_A 162 IQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELK 241 (693)
T ss_dssp SEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHH
T ss_pred EEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHH
Confidence 99999999999999999999999997 4 23677889999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC-----C-cc--cccc-CCCceEEEEEEEeecCC
Q psy5021 240 NSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN-----N-DY--NINL-NSNKFVSLVFKIFHDPF 310 (1021)
Q Consensus 240 ~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~-----~-~~--~~~~-~~~p~~~~V~k~~~~~~ 310 (1021)
..+++++..+.++|+|++||++|.|++.||++|++++|+|.+.+..+ . .. ...| +++||+++|||+++|++
T Consensus 242 ~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~ 321 (693)
T 2xex_A 242 EAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPY 321 (693)
T ss_dssp HHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETT
T ss_pred HHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCC
Confidence 99999999999999999999999999999999999999998754321 0 01 2234 67899999999999999
Q ss_pred CceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCC
Q psy5021 311 LGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENI 390 (1021)
Q Consensus 311 ~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~ 390 (1021)
+|+++|+|||||+|++||.|++...+++++|.+++.++|++++++++|.||||+++.|++++++|||||+...+..++++
T Consensus 322 ~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdTl~~~~~~~~~~~~ 401 (693)
T 2xex_A 322 VGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESM 401 (693)
T ss_dssp TEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEESCSSCCTTCEEEETTCCEECCCC
T ss_pred CceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEeCcccCccCCEEecCCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred cCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEE
Q psy5021 391 ETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVS 470 (1021)
Q Consensus 391 ~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~ 470 (1021)
+++.|+++++|+|++++|++||.++|++|++|||+|++++++||||++|+|||||||||+++||+++||+++.+++|+|+
T Consensus 402 ~~~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~ 481 (693)
T 2xex_A 402 EFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVS 481 (693)
T ss_dssp SSCSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHSCCCEEECCCEEC
T ss_pred CCCCceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEEeCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccce
Q psy5021 471 YKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPV 550 (1021)
Q Consensus 471 yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv 550 (1021)
|||||+++++++++|+||+||++|||+++++++|++ +|+|+.|.+++.++.+|++|+++|++||+||+++||||||||
T Consensus 482 yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~--~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv 559 (693)
T 2xex_A 482 YRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNE--TGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPL 559 (693)
T ss_dssp CEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECC--TTCCCEEEECCCTTSSCGGGHHHHHHHHHHHHHTCSSSSCCB
T ss_pred EEEEeccccceeEeeccccCCCCceEEEEEEEEECC--CCCCCEEEecCCCCcCCHHHHHHHHHHHHHHHhcCCccCCce
Confidence 999999999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCe
Q psy5021 551 IKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENF 630 (1021)
Q Consensus 551 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~ 630 (1021)
+||+|+|+|+++|++||++++|+.|+++||++|+++|+|+||||||.|+|.||++|+|+||++|++|||+|.+++..+++
T Consensus 560 ~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~~ 639 (693)
T 2xex_A 560 IDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNA 639 (693)
T ss_dssp CSEEEEEEEEECCTTTCCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTE
T ss_pred eeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhCCcEeecccccCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 631 KIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 631 ~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+.|+|++|++|+++|.++||++|+|.+.+...
T Consensus 640 ~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 671 (693)
T 2xex_A 640 QVVNAYVPLSEMFGYATSLRSNTQGRGTYTMY 671 (693)
T ss_dssp EEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEEeCHHHHHhHHHHhHHhcCCceEEEEE
Confidence 99999999999999999999999999988764
No 4
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=7.2e-122 Score=1121.70 Aligned_cols=653 Identities=47% Similarity=0.820 Sum_probs=554.2
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.+++|||+|+||+|||||||+++|++.++.+...|.++.+.+++||++.|+++|+|+.+...++.|. ++.++|||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~----~~~i~liD 83 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK----DHRINIID 83 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET----TEEEEEEC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC----CeEEEEEE
Confidence 56789999999999999999999999999999888888889999999999999999999999999998 89999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceee
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 163 (1021)
||||.+|..++.++++.+|++|+|+|++++++.++..+|+++...++|+++|+||+|+..+++.++++++++.++.++.+
T Consensus 84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~ 163 (691)
T 1dar_A 84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVV 163 (691)
T ss_dssp CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEE
T ss_pred CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCceeeEEecccceeeeec-C--CCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWK-E--NSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIK 239 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~ 239 (1021)
.++|++.++.|.|++|++.++.++|+ + ..+...++|+++.+.+.++|++++|.+++.||+++++||++ +++.+++.
T Consensus 164 ~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~ 243 (691)
T 1dar_A 164 MQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELV 243 (691)
T ss_dssp CEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHH
T ss_pred eeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHH
Confidence 99999999999999999999999997 3 23667789999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccC----Ccc--cccc-CCCceEEEEEEEeecCCCc
Q psy5021 240 NSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKN----NDY--NINL-NSNKFVSLVFKIFHDPFLG 312 (1021)
Q Consensus 240 ~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~----~~~--~~~~-~~~p~~~~V~k~~~~~~~g 312 (1021)
..+++++..+.++|+|++||++|.|+++||++|++++|+|.+.+..+ +++ ...| +++|++++|||+++|+++|
T Consensus 244 ~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G 323 (691)
T 1dar_A 244 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVG 323 (691)
T ss_dssp HHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEETTTE
T ss_pred HHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEcCCCC
Confidence 99999999999999999999999999999999999999998754321 011 2334 6889999999999999999
Q ss_pred eEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCcc-ccccCCc
Q psy5021 313 SLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSEN-IQLENIE 391 (1021)
Q Consensus 313 ~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~-~~~~~~~ 391 (1021)
+++|+|||||+|++||.|++.+.++++++.+++.++|++++++++|.||||+++.|++++.+|||||+...+ ..+++++
T Consensus 324 ~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~l~~~~ 403 (691)
T 1dar_A 324 RLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIE 403 (691)
T ss_dssp EEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTTCEEEETTCCCCBCC---
T ss_pred cEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEeCcccCccCCEEecCCCcccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877 8899999
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEE
Q psy5021 392 TPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSY 471 (1021)
Q Consensus 392 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~y 471 (1021)
++.|+++++|+|+++.|++||.++|++|++|||+|++++++||||++|+|||||||||+++||+++||+++.+++|+|+|
T Consensus 404 ~~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~y 483 (691)
T 1dar_A 404 VPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAY 483 (691)
T ss_dssp -----------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCEEEBTTTBCCCBCC
T ss_pred CCCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhhCceEEEeCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceE
Q psy5021 472 KESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVI 551 (1021)
Q Consensus 472 rEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~ 551 (1021)
||||+++++++++|+||+||++|||+|+++++|++ +|+|+.|.+++.++.+|++|+++|++||+||+++||||||||+
T Consensus 484 rEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~--~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~ 561 (691)
T 1dar_A 484 RETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLP--RGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVV 561 (691)
T ss_dssp EEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECC--TTCCEEEEECCCTTSSCTTTHHHHHHHHHHHTTSCTTTSCCBC
T ss_pred EEeeccceeeeeeeccccCCCCceEEEEEEEEECC--CCCCCEEeecccCCcCcHHHHHHHHHHHHHHHhcCCccCCcee
Confidence 99999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeE
Q psy5021 552 KIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFK 631 (1021)
Q Consensus 552 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~ 631 (1021)
||+|+|+|+++|++||++++|+.|+++||++|+++|+|+||||||.|+|.||++|+|+||++|++|||+|.+++..++++
T Consensus 562 ~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~ 641 (691)
T 1dar_A 562 DIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQ 641 (691)
T ss_dssp SEEEEEEEECCCTTTBCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEEEEETTEE
T ss_pred eEEEEEEeeeccccCcchHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCCceeecceecCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 632 IINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 632 ~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
.|+|++|++|+++|.++||++|+|.+.+...
T Consensus 642 ~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 672 (691)
T 1dar_A 642 VIRAFVPLAEMFGYATDLRSKTQGRGSFVMF 672 (691)
T ss_dssp EEEEEEETTTSSSHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEecHHHHhhHHHHHHHhcCCceEEEEE
Confidence 9999999999999999999999999988764
No 5
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=4.9e-115 Score=1058.59 Aligned_cols=638 Identities=29% Similarity=0.518 Sum_probs=612.1
Q ss_pred CCC-CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeE
Q psy5021 1 MKN-KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79 (1021)
Q Consensus 1 m~~-~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i 79 (1021)
|.+ +.++.|||+|+||+|||||||+++|++..+.+...|.+.++.+.+|+.+.|+++|+|+.+....+.|. .+.+
T Consensus 1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~----~~~~ 76 (665)
T 2dy1_A 1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR----GHRV 76 (665)
T ss_dssp -----CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET----TEEE
T ss_pred CCCCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC----CEEE
Confidence 555 67889999999999999999999999999888888888888899999999999999999999999998 8999
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
||||||||.+|..++.++++.+|++++|+|+++|++.+++.+|+.+...++|+++|+||+|+. .+..+.++++++.++
T Consensus 77 nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~- 154 (665)
T 2dy1_A 77 FLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLG- 154 (665)
T ss_dssp EEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHC-
T ss_pred EEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhC-
Confidence 999999999999999999999999999999999999999999999999999999999999999 889999999999999
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHH
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDI 238 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~ 238 (1021)
++.+.++|+..+..|.|++|++.++.|+|+++.+...++|+++.+.+..+|++++|.+++.||+++++|+++ +++.+++
T Consensus 155 ~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~ 234 (665)
T 2dy1_A 155 PILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEAL 234 (665)
T ss_dssp SEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHH
T ss_pred CcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHH
Confidence 888999999999999999999999999998776777889999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEE
Q psy5021 239 KNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIR 318 (1021)
Q Consensus 239 ~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~R 318 (1021)
...+++++..+.++|+|++||++|.|+++||++|++++|+|.+.. +++|++++|||++.|+++|+++|+|
T Consensus 235 ~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~~----------~~~p~~~~V~k~~~d~~~G~~~~~r 304 (665)
T 2dy1_A 235 EKAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTERF----------GDGPPLAKVFKVQVDPFMGQVAYLR 304 (665)
T ss_dssp HHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHHH----------CSCSCEEEEEEEEEETTTEEEEEEE
T ss_pred HHHHHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCccccC----------CCCCeEEEEEEEEEcCCCCeEEEEE
Confidence 999999999999999999999999999999999999999997531 3689999999999999999999999
Q ss_pred EEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCcc--ccccCCcCCCCe
Q psy5021 319 IYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSEN--IQLENIETPIPV 396 (1021)
Q Consensus 319 V~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~--~~~~~~~~~~Pv 396 (1021)
||||+|++||.|++.+ +.++|++++.++|++++++++|.||||+++.|++++.+||||++...+ ..+++++++.|+
T Consensus 305 V~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~ 382 (665)
T 2dy1_A 305 LYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFARLPDPN 382 (665)
T ss_dssp EEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESSSCCCGGGSCCCCCCCCC
T ss_pred EcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEecCCCccccccCCCCCCCce
Confidence 9999999999999887 778999999999999999999999999999999999999999998776 788999999999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEEEeecc
Q psy5021 397 ISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIK 476 (1021)
Q Consensus 397 ~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~yrEti~ 476 (1021)
++++|+|.+++|.+||.++|++|++|||+|++.+|+||||++|+|||||||||+++||+ +||+++.+++|+|+|||||+
T Consensus 383 ~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~~v~v~~~~p~V~yrEti~ 461 (665)
T 2dy1_A 383 VPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEFSVPKVPYRETIK 461 (665)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HTTCCEEEECCCCCCEEEES
T ss_pred EEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HCCceEEEeCCEEEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred cceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEE
Q psy5021 477 KIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVF 556 (1021)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~ 556 (1021)
++++++++|+||+||++|||+++++++|++ |+.|.+++.+|.+|++|+++|++||+||+++||||||||+||+|+
T Consensus 462 ~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~-----g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~ 536 (665)
T 2dy1_A 462 KVAEGQGKYKKQTGGHGQYGDVWLRLEPAS-----EYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMGFKAI 536 (665)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEEEEEEECS-----SCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBCSEEEE
T ss_pred cceeeeeecccccCCCcceEEEEEEEEECC-----CCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCCceeeEEEE
Confidence 999999999999999999999999999986 799999999999999999999999999999999999999999999
Q ss_pred EEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEEEEE
Q psy5021 557 LVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSY 636 (1021)
Q Consensus 557 l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~ 636 (1021)
|+|+++|++||++++|+.|+++||++|+++|+|+||||||+|+|.||++|+|+||++|++|||+|.+++..++++.|+|+
T Consensus 537 l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~a~ 616 (665)
T 2dy1_A 537 VYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAE 616 (665)
T ss_dssp EEEEECCTTTBCHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEE
T ss_pred EEeeeccCCCCCHHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCcccccceeeeeeeeec
Q psy5021 637 IPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 637 ~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+|++|+++|.++||++|+|.+.+...
T Consensus 617 ~P~~e~~~~~~~Lrs~T~G~~~~~~~ 642 (665)
T 2dy1_A 617 VPLAEVLEYYKALPGLTGGAGAYTLE 642 (665)
T ss_dssp EEGGGCTTHHHHHHHHHTTCCEEEEE
T ss_pred ECHHHHhhHHHHhHhhcCCcEEEEEE
Confidence 99999999999999999999987764
No 6
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=2.5e-120 Score=1099.98 Aligned_cols=604 Identities=29% Similarity=0.429 Sum_probs=566.9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+||||||+||+|||||||+++|++++|.+.+.|++++|++++||+++|++|||||+++.+++.|+ +++||||||||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~----~~~iNlIDTPG 76 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE----NTKVNIIDTPG 76 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS----SCBCCCEECCC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC----CEEEEEEECCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeeee
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINF 166 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 166 (1021)
|.||+.++.++++.+|+||+||||.+|+++||+.+|+++.++++|+++|+||||++++++.++++++++.|+..++..+.
T Consensus 77 H~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~ 156 (638)
T 3j25_A 77 HMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK 156 (638)
T ss_dssp SSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC
T ss_pred cHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876543321
Q ss_pred ecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCHHHHHHHHHHH
Q psy5021 167 NIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSIRKL 245 (1021)
Q Consensus 167 p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~~~~~~~~~~~ 245 (1021)
. ++ |.... ..... ..+++|.+++.||+++++|+++ .++..++...++..
T Consensus 157 ~-----------~~-------~~~~~--~~~~~----------~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~ 206 (638)
T 3j25_A 157 V-----------EL-------YPNVC--VTNFT----------ESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIR 206 (638)
T ss_dssp C-----------CS-------CGGGC--CCCCC----------CHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHH
T ss_pred e-----------Ee-------ecccc--ccccc----------hhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhh
Confidence 1 11 11000 00000 1245678888999999999999 89999999999999
Q ss_pred HhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEe
Q psy5021 246 VLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIK 325 (1021)
Q Consensus 246 ~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~ 325 (1021)
+..+.++|+|++||++|.|+++||++|++++|+|... .++|+.++|||+.+|+++|+++|+|||||+|+
T Consensus 207 ~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~~-----------~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~ 275 (638)
T 3j25_A 207 FQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTHR-----------GPSELCGNVFKIEYTKKRQRLAYIRLYSGVLH 275 (638)
T ss_dssp HHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSGGG-----------SCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCC
T ss_pred hcccccccccccccccCCCchhHhhhhhccccCcccc-----------hhhhhcceeeeeeeeccCceEEEEEEEcCccc
Confidence 9999999999999999999999999999999999875 57899999999999999999999999999999
Q ss_pred cCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCCcCCCCeEEEEEEeCC
Q psy5021 326 VGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIF 405 (1021)
Q Consensus 326 ~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~~~~~Pv~~~~iep~~ 405 (1021)
+||.|++...+ ++++.+++.++|+++.++++|.||||+++.| ..+.+|+|+++....+.++++.+|+|+++++|+|.+
T Consensus 276 ~g~~v~~~~~~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g-~~~~~~~tl~d~~~~~~~~~i~~p~Pv~~~aiep~~ 353 (638)
T 3j25_A 276 LRDSVRVSEKE-KIKVTEMYTSINGELCKIDRAYSGEIVILQN-EFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSK 353 (638)
T ss_dssp SCCCSSSCCCC-CSSBCCCCSSCCCCBSCCCTTBCCCCSCCCS-SSCSSEECSSSSSSGGGCSCCCCCCCCCCCEEECCS
T ss_pred CCCccccccCc-ceeEEeeecccccccccccccccceEEEEec-cccccCceecCCCCcccccCccCCCccceeeeccCC
Confidence 99999887654 5789999999999999999999999999988 568889999998888888899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEEEeecccceeeeeEE
Q psy5021 406 KNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIVTQEGKY 485 (1021)
Q Consensus 406 ~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~ 485 (1021)
+.|++||.++|++|++|||+++++++++|||++|+|||||||||+++||+++||+++.+|+|+|+|||||.+.++ +++
T Consensus 354 ~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~~~~~--~~~ 431 (638)
T 3j25_A 354 PEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPLKNAE--YTI 431 (638)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCCSCCE--ECC
T ss_pred hHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEecccce--EEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998764 678
Q ss_pred EecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeeccC
Q psy5021 486 IKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSV 565 (1021)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~ 565 (1021)
++|++|++||++|+++++|++ +++|+.|.+++.++.+|++|+++|++||+|++++| |+||||+|++|+|+|+++|++
T Consensus 432 ~~~~~~~~~~~~v~~~~eP~~--~~~g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~G-l~g~pv~~v~v~l~dg~~h~~ 508 (638)
T 3j25_A 432 HIEVPPNPFWASIGLSVSPLP--LGSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSP 508 (638)
T ss_dssp CCCSSSCCCCCCCCEECCCCC--SSCCCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSS-SSCCCCCSCCCCCCCCCCSSC
T ss_pred EEecCCCCceEEEEEEEeccc--CCCCcEEEeeeecccchhhhhhHHhhhHHHHHhcc-ccCCcccceEEEEEECcccCC
Confidence 899999999999999999999 89999999999999999999999999999999999 999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEEEEEcchhhhccC
Q psy5021 566 DSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGY 645 (1021)
Q Consensus 566 ~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~~~~ 645 (1021)
||++++|+.|+++||++|+.+|+|+||||||.|+|+||++|+|+||++|++|||+|.+++..+++++|+|++|++|++||
T Consensus 509 ~s~~~~f~~a~~~a~~~a~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~~~~~i~a~vP~~e~~gy 588 (638)
T 3j25_A 509 VSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNNEVILSGEIPARCIQEY 588 (638)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCTTEEEEECCCSSCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEecCCeEEEEEEECHHHhhCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccccceeeeeeeeec
Q psy5021 646 STDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 646 ~~~l~~~t~g~~g~~~~ 662 (1021)
.++||++|+|.+.+...
T Consensus 589 ~~~Lrs~T~G~a~~~~~ 605 (638)
T 3j25_A 589 RSDLTFFTNGRSVCLTE 605 (638)
T ss_dssp HHHHHHTTTTCCEEECC
T ss_pred HHHHHhhCCCcEEEEEE
Confidence 99999999999988764
No 7
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=2.2e-105 Score=995.24 Aligned_cols=641 Identities=24% Similarity=0.355 Sum_probs=537.0
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-----------
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV----------- 72 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~----------- 72 (1021)
+.+++|||+|+||+|||||||+++|++.++.+...+ ..+++++|++++|++||+|+.++..++.|..
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~--~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~ 92 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK--AGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQK 92 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC--------------------CCCBCCCEEEEEEECCHHHHHHCSSC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCccccc--CCCceeecCchhhhhcceeEeeceeEEEeccccccccccccc
Confidence 457899999999999999999999999988887654 4457899999999999999999999999972
Q ss_pred -ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC-------
Q psy5021 73 -NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA------- 144 (1021)
Q Consensus 73 -~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~------- 144 (1021)
++.++.++|||||||.+|..++.++++.+|++|+|+|+++|++.|++.+|+++...++|+++|+||+|+...
T Consensus 93 ~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~ 172 (842)
T 1n0u_A 93 TDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKE 172 (842)
T ss_dssp CCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHH
T ss_pred ccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHH
Confidence 345789999999999999999999999999999999999999999999999999999999999999999732
Q ss_pred ----CHHHHHHHHHHHhC-----------CceeeeeeecccC----------------CceeeEEecccceee---eecC
Q psy5021 145 ----NYNNCIIDIKKKFN-----------CIVLPINFNIGIE----------------ENYEGIVDIINKKSF---FWKE 190 (1021)
Q Consensus 145 ----~~~~~~~~i~~~l~-----------~~~~~~~~p~~~~----------------~~~~g~id~~~~~~~---~~~~ 190 (1021)
++.+.+++++..++ ..+.+.++|++++ +.|.+.++.+.++.| +|++
T Consensus 173 e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~ 252 (842)
T 1n0u_A 173 DLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNP 252 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEET
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccC
Confidence 25666777777752 4455567787665 334333444444445 5554
Q ss_pred CC--eeeccC-------ChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC---CCCHHHHH---HHHHHHHhcCceeEEE
Q psy5021 191 NS--IIIKNI-------DKDQLSAFDYYNELMLETLSNNDEFFLEKYINN---NYSINDIK---NSIRKLVLKNKIIPIM 255 (1021)
Q Consensus 191 ~~--~~~~~~-------~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~---~~~~~~~~---~~~~~~~~~~~~~Pv~ 255 (1021)
.. +...++ ...+.+++.+++++|+|++++.|+++|++||++ .++.+++. ..+++++ .+.|+|+
T Consensus 253 ~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~-~~~~~pv- 330 (842)
T 1n0u_A 253 KTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVV-MRKFLPA- 330 (842)
T ss_dssp TTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHH-HHHHSBH-
T ss_pred CCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHH-Hhhccch-
Confidence 22 333333 335777889999999999999999999999986 68888887 7888888 6688997
Q ss_pred eccccCcccHHHHHHHHHHhCCCCccccccC-----C----c----ccccc-CCCceEEEEEEEeecCCCce-EEEEEEE
Q psy5021 256 CGSSLKNKGIEFLLNSICEYLPSPYDVDFKN-----N----D----YNINL-NSNKFVSLVFKIFHDPFLGS-LSFIRIY 320 (1021)
Q Consensus 256 ~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~-----~----~----~~~~~-~~~p~~~~V~k~~~~~~~g~-~~~~RV~ 320 (1021)
+++|||+|++++|+|.+.+..+ . + ....| +++|++++|||+..+++.|+ ++|+|||
T Consensus 331 ---------~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~ 401 (842)
T 1n0u_A 331 ---------ADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVF 401 (842)
T ss_dssp ---------HHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEE
T ss_pred ---------HHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEE
Confidence 7999999999999998653211 0 0 01234 78999999999999999995 9999999
Q ss_pred eeEEecCCEEE------eCCCce---eeEeceEEEeecCCeeccccccCCCEEEEecCCccccC-CeeccCCccccccCC
Q psy5021 321 SGFIKVGDLVY------NSTKKV---KEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTG-DTLCSLSENIQLENI 390 (1021)
Q Consensus 321 sG~l~~gd~v~------~~~~~~---~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~g-dtl~~~~~~~~~~~~ 390 (1021)
||+|++||.|+ |.+.++ .++|++|+.++|++++++++|.|||||++.|++++.+| +|||+...+..++++
T Consensus 402 sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~l~~~ 481 (842)
T 1n0u_A 402 AGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVM 481 (842)
T ss_dssp ESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCCBCCC
T ss_pred eeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCCccccccC
Confidence 99999999994 444444 68999999999999999999999999999999998654 699998878888999
Q ss_pred cCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhc-CeeeEEeCCe
Q psy5021 391 ETP-IPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKEN-NIKTKISKPQ 468 (1021)
Q Consensus 391 ~~~-~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~-~v~v~~~~p~ 468 (1021)
.++ .|+++++|+|+++.|++||.+||++|++|||+|+++++ ||||++|+|||||||||+++||+++| |+++.+++|+
T Consensus 482 ~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~-etge~il~g~GelHLei~~~rL~~~f~~vev~~~~P~ 560 (842)
T 1n0u_A 482 KFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPV 560 (842)
T ss_dssp CCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEEC-TTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEECCC
T ss_pred CCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEc-CCCCEEEEeccHHHHHHHHHHHHHHhcCCceEecCcE
Confidence 988 69999999999999999999999999999999999998 89999999999999999999999999 9999999999
Q ss_pred EEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCC-----------------------------------------
Q psy5021 469 VSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISL----------------------------------------- 507 (1021)
Q Consensus 469 V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~----------------------------------------- 507 (1021)
|+|||||+++++..+..+ ..+ .+.+++++++|+++
T Consensus 561 V~yrETi~~~~~~~~~~~-~~~---~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~ 636 (842)
T 1n0u_A 561 VAYRETVESESSQTALSK-SPN---KHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCF 636 (842)
T ss_dssp CCCEEEESSCCSSCEEEE-CTT---SSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEE
T ss_pred EEEEEeeccccccceeec-cCC---cceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeee
Confidence 999999998876533322 112 23478999999862
Q ss_pred --CCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeeccCCCC--HHHHHHHHHHHHHHH
Q psy5021 508 --ENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSS--EYAFKNAAAIALKDA 583 (1021)
Q Consensus 508 --~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~--~~~~~~a~~~a~~~a 583 (1021)
+.+.+|.|.+.+.++.++++|+++|++||+||+++||||||||+||+|+|+|+++|...++ .++|+.|+++||++|
T Consensus 637 ~p~~~~~~~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a 716 (842)
T 1n0u_A 637 GPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAG 716 (842)
T ss_dssp SSTTTSSEEEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCcEEEecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHH
Confidence 0125799999999999999999999999999999999999999999999999999965444 788999999999999
Q ss_pred HHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecC--CeEEEEEEcchhhhccCCcccccceeeeeeeee
Q psy5021 584 LKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHE--NFKIINSYIPLRELFGYSTDLRSNTKGTIGHVD 661 (1021)
Q Consensus 584 ~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~ 661 (1021)
+++|+|+||||||.|+|+||++++|+||+||++|||+|+++++.+ +.+.|+|++|++|+|||+++||++|+|.+.+.+
T Consensus 717 ~~~a~p~LLEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~ 796 (842)
T 1n0u_A 717 FLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQM 796 (842)
T ss_dssp HHHSCEEEEEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEE
T ss_pred HHhCCCeEEeeEEEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEE
Confidence 999999999999999999999999999999999999999998865 469999999999999999999999999998776
Q ss_pred c
Q psy5021 662 H 662 (1021)
Q Consensus 662 ~ 662 (1021)
.
T Consensus 797 ~ 797 (842)
T 1n0u_A 797 V 797 (842)
T ss_dssp E
T ss_pred E
Confidence 4
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=3.2e-91 Score=827.53 Aligned_cols=479 Identities=23% Similarity=0.359 Sum_probs=397.5
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCC----cccccChHHHhhhCceeeeeeeEEEeecccCceeE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHG----TTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~----~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i 79 (1021)
..+++|||||+||+|||||||+++||+++|++.+.|.++++ .+++||+++|++|||||+++.+++.|+ +++|
T Consensus 27 e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~----~~~i 102 (548)
T 3vqt_A 27 EAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR----DRVV 102 (548)
T ss_dssp HHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET----TEEE
T ss_pred cccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC----CEEE
Confidence 35689999999999999999999999999999999999876 489999999999999999999999999 9999
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
||||||||.||+.++.++|+++|+||+||||.+|+++||+.+|++|.++++|+++||||||++++++.++++++++.|+.
T Consensus 103 NlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~ 182 (548)
T 3vqt_A 103 NLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQI 182 (548)
T ss_dssp EEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTS
T ss_pred EEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCCe----eeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC--CC
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENSI----IIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN--NY 233 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~--~~ 233 (1021)
+++++++|++.++.|.|++|+++++.+.|++... ....+.....+...+ .++...+.....++.+.+. ..
T Consensus 183 ~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~ 258 (548)
T 3vqt_A 183 ECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDE----YLGDQAEQLRMDLALLEEAGTPF 258 (548)
T ss_dssp EEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHH----HHGGGHHHHHHHHHHHHHHCCCC
T ss_pred ceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHH----HHHHHHHHhhhHHHHHhhccCch
Confidence 9999999999999999999999999999986541 111111100000110 0111110001111111111 11
Q ss_pred CHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeec---CC
Q psy5021 234 SINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHD---PF 310 (1021)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~---~~ 310 (1021)
. .++++++.++||||+||++|.|+++|||+|++++|+|.+.+... ......+.||.++|||+..+ ++
T Consensus 259 ~--------~e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~--~~~~~~~~p~~a~vfKi~~~~~~~~ 328 (548)
T 3vqt_A 259 D--------EERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAAT--RVVEPGEEAFTGVVFKIQANMDKAH 328 (548)
T ss_dssp C--------HHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSS--SEECTTCSSCEEEEEEEECC-----
T ss_pred h--------HHHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCccccc--cccCCCCcCceEEEEEEEccCCcCC
Confidence 1 23456789999999999999999999999999999998754221 00011567999999999877 89
Q ss_pred CceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCC
Q psy5021 311 LGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENI 390 (1021)
Q Consensus 311 ~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~ 390 (1021)
.|+++|+|||||+|++||.|++.+.++++++.+++.++|++++++++|.|||||+|.|++++.+|||||+...+..++++
T Consensus 329 ~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~~~~~~~~~i 408 (548)
T 3vqt_A 329 RDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGI 408 (548)
T ss_dssp --CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESSSSCCCBCCC
T ss_pred CCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEecCCccCccCCEecCCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred cCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeE-----Ee
Q psy5021 391 ETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTK-----IS 465 (1021)
Q Consensus 391 ~~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~-----~~ 465 (1021)
+++.|+++++|+|+++.|.+||.++|++|+++|| +.+.++++|||++|+|||||||||+++||+++||+++. ++
T Consensus 409 ~~~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~-~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey~vev~~e~v~~~ 487 (548)
T 3vqt_A 409 PNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGA-VQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVYEGVSTH 487 (548)
T ss_dssp EEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTS-SEEEEESSSCCCEEEESSTHHHHHHHHHHHHHHCCCEEEEECSCC
T ss_pred CCCCCcceeeeeeCCchhHHHHHHHHHHhhhcCc-eeEEEECCCCcEEEEEECHHHHHHHHHHHHHHhCCCEEEeecccc
Confidence 9999999999999999999999999999999998 55667999999999999999999999999999999966 57
Q ss_pred CCeEEEEeecccceeeeeEEEecCCCCceeEEEEEE
Q psy5021 466 KPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIR 501 (1021)
Q Consensus 466 ~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1021)
.|+|+|||||++.+++.++|+||+||++|++.|.|.
T Consensus 488 ~P~V~YrEti~~~~~~~~~~kkq~g~~gq~~~V~L~ 523 (548)
T 3vqt_A 488 TARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLA 523 (548)
T ss_dssp EEEEEECSCHHHHHHHHHHTGGGEEEETTSCEEEEE
T ss_pred CceEEecCCccchhhhhhhhhheeeecCCCCEEEEe
Confidence 899999999999999999999999999999999874
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=5.1e-76 Score=697.10 Aligned_cols=461 Identities=25% Similarity=0.435 Sum_probs=388.3
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINII 82 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~li 82 (1021)
+.+++|||+|+||+|||||||+++|++.++.+...+ .+.+++|+++.|++||+|++++.+++.|.. ++..+.++||
T Consensus 2 ~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~---~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inli 78 (600)
T 2ywe_A 2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE---KREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLI 78 (600)
T ss_dssp CGGGEEEEEEECC--CCHHHHHHHHHHHHTC--------------------------CCCCSEEEEEECTTSCEEEEEEE
T ss_pred CccCceEEEEECCCCCCHHHHHHHHHhccCCccccc---ccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEE
Confidence 467899999999999999999999999888776532 257899999999999999999999999985 4556899999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCcee
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVL 162 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~ 162 (1021)
|||||.||..++.++++.+|++|+|+|+++|++.|+.++|..+...++|+++|+||+|++.+++++..+++.+.++.++
T Consensus 79 DTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~- 157 (600)
T 2ywe_A 79 DTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDP- 157 (600)
T ss_dssp CCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCG-
T ss_pred ECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCc-
Confidence 9999999999999999999999999999999999999999999999999999999999998888777777776654310
Q ss_pred eeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHH
Q psy5021 163 PINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSI 242 (1021)
Q Consensus 163 ~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~ 242 (1021)
T Consensus 158 -------------------------------------------------------------------------------- 157 (600)
T 2ywe_A 158 -------------------------------------------------------------------------------- 157 (600)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEee
Q psy5021 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSG 322 (1021)
Q Consensus 243 ~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG 322 (1021)
.+++++||++|.|+++|+++|++++|+|... +++|+.++|||+++|++.|.++++||++|
T Consensus 158 ---------~~vi~vSAktg~GI~~Lle~I~~~lp~p~~~-----------~~~pl~~lV~~~~~d~~~G~v~~~rV~sG 217 (600)
T 2ywe_A 158 ---------EEAILASAKEGIGIEEILEAIVNRIPPPKGD-----------PQKPLKALIFDSYYDPYRGAVAFVRIFDG 217 (600)
T ss_dssp ---------GGCEECBTTTTBSHHHHHHHHHHHSCCCCCC-----------TTSCCEEEEEEEEEETTTEEEEEEEEEES
T ss_pred ---------ccEEEEEeecCCCchHHHHHHHHhccccccc-----------ccCCcceeEEEEeecccceEEEEEEEEeC
Confidence 1268899999999999999999999999764 57899999999999999999999999999
Q ss_pred EEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe-c---CCccccCCeeccCCcc--ccccCCcCCCCe
Q psy5021 323 FIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV-G---LKESSTGDTLCSLSEN--IQLENIETPIPV 396 (1021)
Q Consensus 323 ~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~gdtl~~~~~~--~~~~~~~~~~Pv 396 (1021)
++++||.|++.+.++.+++.+++.+.+ +..+++++.||||+++. | ++++.+||||+....+ ..++++++++|+
T Consensus 218 ~l~~Gd~I~~~~~~~~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~P~ 296 (600)
T 2ywe_A 218 EVKPGDKIMLMSTGKEYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPM 296 (600)
T ss_dssp EECTTCEEEETTTTEEEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCCSSCCSCCCCCCCC
T ss_pred EEecCCEEEeccccceEeeecccccCC-CceECCEEecCceeeeeccccchhhccCCCEEEeCCCccccccCCCCCCCcE
Confidence 999999999999999999999998876 48899999999999884 4 5579999999987766 468888999999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEe-----cChhHHHHHHHHHHhhcCeeeEEeCCeEEE
Q psy5021 397 ISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSG-----MGELHLEIIVDRILKENNIKTKISKPQVSY 471 (1021)
Q Consensus 397 ~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g-----~GelhLei~~~rL~~~~~v~v~~~~p~V~y 471 (1021)
++++|+|.++.|.++|.++|++|.+|||+|+++ +||+|.++.| ||||||||+++||+++||+++.+++|+|+|
T Consensus 297 v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~g~~~~~~G~lHlei~~erl~re~~~~v~~~~P~V~y 374 (600)
T 2ywe_A 297 VYAGIYPAEDTTYEELRDALEKYAINDAAIVYE--PESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIY 374 (600)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHHSCCCEEECCCEECE
T ss_pred EEEEeeccccccHHHHHHHHHHHhhhCCEEEEE--ECCccccccceEEEeccHHHHHHHHHHHHhhcCceEEEEeeeEEE
Confidence 999999999999999999999999999999997 5789877777 999999999999999999999999999999
Q ss_pred EeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceE
Q psy5021 472 KESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVI 551 (1021)
Q Consensus 472 rEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~ 551 (1021)
|||+++. |. .+.|.+ | +|+|+.
T Consensus 375 reti~~~------------g~-------------------~~~~~~--------------------------p-~~~p~~ 396 (600)
T 2ywe_A 375 RVKKKFT------------DE-------------------VIEVRN--------------------------P-MDFPDN 396 (600)
T ss_dssp EEEETTC------------SS-------------------CEEESS--------------------------G-GGSCSC
T ss_pred EEEecCC------------Cc-------------------EEEEeC--------------------------h-hhCCCC
Confidence 9998741 11 111111 1 467766
Q ss_pred EEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeec-CCe
Q psy5021 552 KIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDH-ENF 630 (1021)
Q Consensus 552 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~-~~~ 630 (1021)
| + .-+.||||||+++|.+|++|+|+||++|++|||++.+++.. +++
T Consensus 397 ~----------~-----------------------~~~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~~~ 443 (600)
T 2ywe_A 397 A----------G-----------------------LIEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNT 443 (600)
T ss_dssp G----------G-----------------------GEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEETTE
T ss_pred C----------c-----------------------ccccccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCCCE
Confidence 5 1 11489999999999999999999999999999999999985 468
Q ss_pred EEEEEEcchhhh-ccCCcccccceeeeeeeeec
Q psy5021 631 KIINSYIPLREL-FGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 631 ~~i~a~~P~~e~-~~~~~~l~~~t~g~~g~~~~ 662 (1021)
..|+|.+|++|+ ++|.++|+++|.|.+.+...
T Consensus 444 ~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~ 476 (600)
T 2ywe_A 444 VYLEYEMPLSEIIVDFHDKIKSISRGFASYDYE 476 (600)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEE
Confidence 999999999999 89999999999999887653
No 10
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=3.7e-74 Score=683.31 Aligned_cols=457 Identities=26% Similarity=0.418 Sum_probs=381.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEEcC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINIIDT 84 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~liDt 84 (1021)
+++|||+|+||+|||||||+++|++.++.+... ..+.+++|+++.|++||+|+.+..+++.|.. ++..+.++||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~---~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDT 78 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDR---EMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDT 78 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC-----------------------------CEEEEEEECTTSCEEEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccc---cccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEEC
Confidence 689999999999999999999999988887653 2357899999999999999999999999985 455699999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeee
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPI 164 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 164 (1021)
|||.||..++.++++.+|++|+|+|+++|++.|+...|..+...++|+++|+||+|++.+++++..+++.+.++.++
T Consensus 79 PGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~--- 155 (599)
T 3cb4_D 79 PGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA--- 155 (599)
T ss_dssp CCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC---
T ss_pred CCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc---
Confidence 99999999999999999999999999999999999999999999999999999999998888877777777664320
Q ss_pred eeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHH
Q psy5021 165 NFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRK 244 (1021)
Q Consensus 165 ~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~ 244 (1021)
T Consensus 156 -------------------------------------------------------------------------------- 155 (599)
T 3cb4_D 156 -------------------------------------------------------------------------------- 155 (599)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEE
Q psy5021 245 LVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFI 324 (1021)
Q Consensus 245 ~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l 324 (1021)
.+++++||++|.|+++|+++|.+++|+|... +++|+.++||++++|++.|+++++||++|+|
T Consensus 156 -------~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~-----------~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l 217 (599)
T 3cb4_D 156 -------TDAVRCSAKTGVGVQDVLERLVRDIPPPEGD-----------PEGPLQALIIDSWFDNYLGVVSLIRIKNGTL 217 (599)
T ss_dssp -------TTCEEECTTTCTTHHHHHHHHHHHSCCCCCC-----------TTSCCEEEEEEEEEETTTEEEEEEEEEESCE
T ss_pred -------ceEEEeecccCCCchhHHHHHhhcCCCcccc-----------ccCCceeeeeeccccccccEEEEEEEEeCEE
Confidence 1267889999999999999999999999764 5789999999999999999999999999999
Q ss_pred ecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe-c---CCccccCCeeccCCcc--ccccCCcCCCCeEE
Q psy5021 325 KVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV-G---LKESSTGDTLCSLSEN--IQLENIETPIPVIS 398 (1021)
Q Consensus 325 ~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~gdtl~~~~~~--~~~~~~~~~~Pv~~ 398 (1021)
++||.+.+..+++.+++.+++.+.+. ..+++++.||||+++. | ++++.+||||+....+ ..++++..+.|+++
T Consensus 218 ~~Gd~v~~~~~~~~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~P~v~ 296 (599)
T 3cb4_D 218 RKGDKVKVMSTGQTYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVY 296 (599)
T ss_dssp ESSCEEEETTTCCEEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCCSSCCTTCCCCCCCEE
T ss_pred ecCCEEEeccccceeEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccCccCCEeeecCCccccccccccCCCcceE
Confidence 99999999999999999999988765 8899999999999884 5 4578999999987766 56888899999999
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEe-----cChhHHHHHHHHHHhhcCeeeEEeCCeEEEEe
Q psy5021 399 ISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSG-----MGELHLEIIVDRILKENNIKTKISKPQVSYKE 473 (1021)
Q Consensus 399 ~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g-----~GelhLei~~~rL~~~~~v~v~~~~p~V~yrE 473 (1021)
++++|.+..|.++|.++|++|.++||+|.+. ++|+|+++.| ||||||||+++||+++||+++.+++|+|+|||
T Consensus 297 ~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~~~~~~~~P~V~yre 374 (599)
T 3cb4_D 297 AGLFPVSSDDYEAFRDALGKLSLNDASLFYE--PESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEV 374 (599)
T ss_dssp EEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHTSCCCEEECCCEECEEE
T ss_pred EEEEecCccCHHHHHHHHHHHHhhCcEEEEE--eccccccccceEEEeccHHHHHHHHHHHHHHcCceEEEEeeeEEEEE
Confidence 9999999999999999999999999999997 5789877777 99999999999999999999999999999999
Q ss_pred ecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceEEeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEE
Q psy5021 474 SIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKI 553 (1021)
Q Consensus 474 ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v 553 (1021)
|+++ |+++.|.+ |. ++|..
T Consensus 375 ti~~--------------------------------g~~~~~~~-------p~--------------------~~p~~-- 393 (599)
T 3cb4_D 375 ETTS--------------------------------REVIYVDS-------PS--------------------KLPAV-- 393 (599)
T ss_dssp EESS--------------------------------SCEEEESS-------GG--------------------GSCCG--
T ss_pred EecC--------------------------------CceEEecC-------hh--------------------hCCCc--
Confidence 9864 12233332 11 22211
Q ss_pred EEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeeeEEEEEEcCCccHhhHHHHHHcCCcEEeeeeecCCeEEE
Q psy5021 554 KVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKII 633 (1021)
Q Consensus 554 ~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i 633 (1021)
++ -+.||||||+++|.+|++|+|+||++|++|||++.+++..+++..|
T Consensus 394 ---------~~-----------------------~~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~~~~~i 441 (599)
T 3cb4_D 394 ---------NN-----------------------IYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVAL 441 (599)
T ss_dssp ---------GG-----------------------EEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCTTEEEE
T ss_pred ---------cc-----------------------cchhhccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecCCeEEE
Confidence 00 1379999999999999999999999999999999999998889999
Q ss_pred EEEcchhhh-ccCCcccccceeeeeeeeec
Q psy5021 634 NSYIPLREL-FGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 634 ~a~~P~~e~-~~~~~~l~~~t~g~~g~~~~ 662 (1021)
+|.+|++|+ ++|.++|+|+|.|.+.+...
T Consensus 442 ~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~ 471 (599)
T 3cb4_D 442 TYEIPMAEVVLDFFDRLKSTSRGYASLDYN 471 (599)
T ss_dssp EEEEEHHHHHTTTHHHHHHHTTSCCEEEEE
T ss_pred EEEecHHHHHHHHHHhhhhcCCcEEEEEEE
Confidence 999999999 89999999999999888764
No 11
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=1.2e-73 Score=673.32 Aligned_cols=457 Identities=25% Similarity=0.395 Sum_probs=398.3
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccC----CcccccChHHHhhhCceeeeeeeEEEeecccCceeE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHH----GTTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~----~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i 79 (1021)
+.+++|||+|+||+|||||||+++|++.++.+...|.+.. +.+++|+++.|+++|+|+.++...+.|. ++.+
T Consensus 9 ~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~----~~~i 84 (528)
T 3tr5_A 9 QTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK----DYLI 84 (528)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET----TEEE
T ss_pred hhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC----CEEE
Confidence 4568999999999999999999999999999988888765 4678999999999999999999999998 9999
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
+|||||||.+|..++.++++.+|++|+|+|+++|++.++..+|+.+...++|+++|+||+|+.+++..+.++++++.++.
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~ 164 (528)
T 3tr5_A 85 NLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRI 164 (528)
T ss_dssp EEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCC
T ss_pred EEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCC---eeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCCH
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENS---IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSI 235 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~~ 235 (1021)
.+.++++|++.++.|.|++|+++++.+.|+++. ....+++++..+. ..++.+. ++ +++|+++ ++..
T Consensus 165 ~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~-------~~-~~~~~e~~~l~~ 234 (528)
T 3tr5_A 165 HCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNP--ELDKKLG-------DL-ASELRNEIELVK 234 (528)
T ss_dssp EEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCH--HHHHHHT-------HH-HHHHHHHHHHHH
T ss_pred CceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchH--HHHHHHH-------HH-HHHHhhhcchhh
Confidence 999999999999999999999999999997543 1112222222111 1222221 11 4555543 2222
Q ss_pred HHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEee--cC-CCc
Q psy5021 236 NDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFH--DP-FLG 312 (1021)
Q Consensus 236 ~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~--~~-~~g 312 (1021)
++.....++++..+.++|||++||++|.||++||++|++++|+|...+... ......++|++++|||+.. || ++|
T Consensus 235 ~~~~~~~~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~--~~~~~~~~~~~~~VFKi~~~~dp~~~g 312 (528)
T 3tr5_A 235 GASHPFEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNS--RLVKPEEEKFSGFVFKIQANMDPGHRD 312 (528)
T ss_dssp HHSCCCCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSS--SCBCTTSSSCEEEEEEEEECCC-CCCC
T ss_pred hhhhHHHHHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccc--eeeCCCcccceeEEEEEecccCccCCc
Confidence 221122277788899999999999999999999999999999998753211 0011146899999999985 88 899
Q ss_pred eEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCCcC
Q psy5021 313 SLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIET 392 (1021)
Q Consensus 313 ~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~~~ 392 (1021)
+++|+|||||+|++||.|++.+.++++++.+++.++|++++++++|.||||+++.|++++++|||||+. .+..++++++
T Consensus 313 ~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~~~-~~~~~~~~~~ 391 (528)
T 3tr5_A 313 RIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQG-ERFKFTGIPN 391 (528)
T ss_dssp EEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEESS-CCCCBCCCEE
T ss_pred eEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEcCC-CCcccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999984 5567788888
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEEE
Q psy5021 393 PIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYK 472 (1021)
Q Consensus 393 ~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~yr 472 (1021)
+.|+++++|+|+++.|.+||.+||++|++|||+ ++..+++|||++|+|||||||||+++||+++||+++.+++|+|+|+
T Consensus 392 ~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey~v~v~~~~~~v~~~ 470 (528)
T 3tr5_A 392 FASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYESVNVVTA 470 (528)
T ss_dssp ECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHHHCCCEEEECCSCCEE
T ss_pred CCCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHhCcEEEEecCceEEE
Confidence 899999999999999999999999999999996 7888999999999999999999999999999999999999999999
Q ss_pred eecccc
Q psy5021 473 ESIKKI 478 (1021)
Q Consensus 473 Eti~~~ 478 (1021)
|+|...
T Consensus 471 ~~i~~~ 476 (528)
T 3tr5_A 471 RWVICD 476 (528)
T ss_dssp EEEECS
T ss_pred EEecCC
Confidence 999753
No 12
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=8.5e-73 Score=667.10 Aligned_cols=457 Identities=22% Similarity=0.379 Sum_probs=372.1
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCC----cccccChHHHhhhCceeeeeeeEEEeecccCceeE
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHG----TTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~----~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i 79 (1021)
+.+++|||+|+||+|||||||+++|++..+.+...|.+..+ .+++||++.|+++|+|+.++...+.|. ++.+
T Consensus 9 ~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~----~~~i 84 (529)
T 2h5e_A 9 EVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH----DCLV 84 (529)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET----TEEE
T ss_pred hhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC----CeEE
Confidence 35689999999999999999999999988888777776553 678999999999999999999999998 8999
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCC
Q psy5021 80 NIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 80 ~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
+|||||||.+|..++.++++.+|++|+|+|+++|++.+++.+|+.+...++|+++|+||+|+..++..+.++++++.++.
T Consensus 85 ~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~ 164 (529)
T 2h5e_A 85 NLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKI 164 (529)
T ss_dssp EEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCC
T ss_pred EEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCC--C-eee-ccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcC-CCC
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKEN--S-III-KNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYS 234 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~--~-~~~-~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~-~~~ 234 (1021)
.+.++++|++++..|.|+.|++++..+.|.+. . ... .++|. ..+. .+.+. .++.++++|+++ ++.
T Consensus 165 ~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~-~~~~------~l~e~---~~~~~~~~~~e~~~l~ 234 (529)
T 2h5e_A 165 GCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKG-LNNP------DLDAA---VGEDLAQQLRDELELV 234 (529)
T ss_dssp EEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECC-SSCH------HHHHH---HCHHHHHHHHHHHHHH
T ss_pred CccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCC-CCHH------HHHHh---hCHHHHHHhhcccchh
Confidence 99999999999999999999999999999652 1 111 22221 1111 12222 267788888876 444
Q ss_pred HHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEee---cCCC
Q psy5021 235 INDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFH---DPFL 311 (1021)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~---~~~~ 311 (1021)
.+++...+++++..+.++|||+|||++|.||++||++|++++|+|...+... ......++||+++|||+.. ++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~--~~~~~~~~~~~~~vfKi~~~~d~~~~ 312 (529)
T 2h5e_A 235 KGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDT--RTVEASEDKFTGFVFKIQANMDPKHR 312 (529)
T ss_dssp HHHSCCCCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSS--CEECTTCCSCEEEEEEECSSCCSSSS
T ss_pred hhhhhhhhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCcccccc--cccCCCCCCeEEEEEEEeeccCcCCC
Confidence 4444444667888899999999999999999999999999999998653210 0011136899999999986 4678
Q ss_pred ceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCccccCCeeccCCccccccCCc
Q psy5021 312 GSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIE 391 (1021)
Q Consensus 312 g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~gdtl~~~~~~~~~~~~~ 391 (1021)
|+++|+||+||+|++||.|++.+.++.++|++++.++|.+++++++|.||||+++.|++++++|||||+.. +..+++++
T Consensus 313 G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~-~~~~~~~~ 391 (529)
T 2h5e_A 313 DRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGE-MMKFTGIP 391 (529)
T ss_dssp CCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEECCSSCCCTTCEEESSC-CCCBCCCE
T ss_pred ceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEeccCCCccCCEeecCC-ccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876 56788889
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCcEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEE
Q psy5021 392 TPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSY 471 (1021)
Q Consensus 392 ~~~Pv~~~~iep~~~~d~~kl~~~L~~L~~eDpsl~~~~~~etge~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~y 471 (1021)
+++|+++++|+|+++.|.+||.+||++|++||| +++.++++|||++|+|||||||||+++||+++||+++.+++|+|+|
T Consensus 392 ~~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey~v~v~~~~~~v~y 470 (529)
T 2h5e_A 392 NFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNVAT 470 (529)
T ss_dssp EECCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHSSCCEEEECCCCSE
T ss_pred CCCccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHhCcEEEEecCceeE
Confidence 999999999999999999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred Eeecccc
Q psy5021 472 KESIKKI 478 (1021)
Q Consensus 472 rEti~~~ 478 (1021)
||||...
T Consensus 471 ~eti~~~ 477 (529)
T 2h5e_A 471 ARWVECA 477 (529)
T ss_dssp EEEEECS
T ss_pred EEEEcCC
Confidence 9999654
No 13
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=9.3e-55 Score=500.31 Aligned_cols=368 Identities=55% Similarity=0.938 Sum_probs=324.9
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.++++|++|||||||+++|++.....+...+...+.+|...+|+++|+|++.....++.++..++|||||||++|.++
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 35789999999999999999997533222222222234688889999999999999889888899999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEE
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIV 810 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii 810 (1021)
|..+++.+|++|+|||+++|.+.|+++|+.++..+++|++|+++||+|+.++++.++.+.+++.++++.+++..+.++++
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 162 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPII 162 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEE
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEE
Confidence 99999999999999999999999999999999999999888999999998645566777788889998888866678999
Q ss_pred EecccccccCCCCCccCcc-h-HHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEe
Q psy5021 811 IGSALLALEGKDDNQLGTT-S-IKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIV 888 (1021)
Q Consensus 811 ~iSa~~~~~~~~~~~~~~~-~-i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~ 888 (1021)
++||++|.|+.+ ..|+ + +.+|+++|.+.+|.|.+..+.|++++|+++|+++|.|+|++|+|.+|+|++||+|.+.
T Consensus 163 ~~SA~~g~n~~~---~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~ 239 (397)
T 1d2e_A 163 VGSALCALEQRD---PELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFL 239 (397)
T ss_dssp ECCHHHHHTTCC---TTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEE
T ss_pred EeehhhcccccC---CCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEe
Confidence 999999865421 2232 4 7899999999888888888999999999999999999999999999999999999999
Q ss_pred ecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccccCC
Q psy5021 889 GYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFNG 968 (1021)
Q Consensus 889 p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i~~G 968 (1021)
|.+...+++|++|++++.++++|.|||+|++.|++++..++++||+|++++++.++++|+|++.|++++.++..+||..|
T Consensus 240 ~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~g 319 (397)
T 1d2e_A 240 GHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSH 319 (397)
T ss_dssp ETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEESTTSCCCEEEEEEEEEECCGGGTSCSSCBCTT
T ss_pred CCCCCeEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEeCCCCCCcccEEEEEEEEeccccccCccccCCC
Confidence 87545678999999999999999999999999999999999999999998888889999999999998654445799999
Q ss_pred CEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 969 YKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 969 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
|++++|+++.+++|++.+.+.++.+++||.+.|+|++.+|+|++.|+||+||+
T Consensus 320 ~~~~~~~~t~~~~~~i~l~~~~~~l~~~~~~~v~~~~~~p~~~~~~~r~~lr~ 372 (397)
T 1d2e_A 320 FMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRD 372 (397)
T ss_dssp CCCEEEETTEEEEEEEECCSSCCCBCTTCEEEEEEEEEEEECCCTTCEEEEEE
T ss_pred CEEEEEEecCEEEEEEEEcCCcccccCCCEEEEEEEECCeEEEccCCeEEEEe
Confidence 99999999999999888766678999999999999999999999999999995
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=6.8e-54 Score=497.88 Aligned_cols=362 Identities=27% Similarity=0.388 Sum_probs=318.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccc---------------cccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYG---------------GEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~---------------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
..+..+++|++|+|||||+|+|++....+.. +.+...+.+|+.++|+++|+|++.....++++++
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 4578899999999999999999765433322 2233445689999999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeeccccc---hhh
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM-------PQTREHILLARQVGVPNIVVFLNKADCVQ---DKE 784 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~Dl~~---~~~ 784 (1021)
.++|||||||++|.++|..+++.+|++||||||++|.+ .|+++|+.++..+++|++|||+||||+.. .+.
T Consensus 96 ~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~ 175 (439)
T 3j2k_7 96 HFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNE 175 (439)
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHH
Confidence 99999999999999999999999999999999999986 79999999999999999999999999964 345
Q ss_pred HHHHHHHHHHHhhhccccCCC-ceEEEEecccccccCCCCC-ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEe
Q psy5021 785 LLDLVEMEIRELLTEYDFDGE-NTKIVIGSALLALEGKDDN-QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFS 862 (1021)
Q Consensus 785 ~~~~~~~~~~~~l~~~~~~~~-~~~ii~iSa~~~~~~~~~~-~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~ 862 (1021)
+++.+.+++..+++.+++... .++++++||++|.+..... ...|+..+.|++.|.. ++.|.+..+.|++|+|+++|+
T Consensus 176 ~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~r~~v~~~~~ 254 (439)
T 3j2k_7 176 RYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDN-LPNFNRSVDGPIRLPIVDKYK 254 (439)
T ss_pred HHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHh-CCCCccCCCCCeEEEEEEEEc
Confidence 678888899999999998643 6899999999987654432 4578888889998876 677778889999999999986
Q ss_pred eCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCC-c
Q psy5021 863 ISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS-I 941 (1021)
Q Consensus 863 v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~ 941 (1021)
|.|+|++|+|++|+|++||.|.+.|.+. +++|++|++++.++++|.|||+|+|+|++++..+++||||||+++. +
T Consensus 255 --~~G~v~~G~v~~G~l~~Gd~v~~~p~~~--~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~~~~ 330 (439)
T 3j2k_7 255 --DMGTVVLGKLESGSIFKGQQLVMMPNKH--NVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSNLC 330 (439)
T ss_pred --CCCeEEEEEEEeeEEecCCEEEEccCCc--eEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEecCCCCCC
Confidence 8999999999999999999999998764 5899999999999999999999999999999999999999999875 5
Q ss_pred cceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeecc-------------CCCcccccCCCeEEEEEEEcee
Q psy5021 942 KSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKL-------------PENVEMVLPGDNIKLNVTLLSS 1008 (1021)
Q Consensus 942 ~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~g~~~~v~~~~~~p 1008 (1021)
..+++|+|++.|++|+ .+|..||++++|||+.+++|++.- ...+++++.||.+.|+|++.+|
T Consensus 331 ~~~~~f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v~~~~~~p 405 (439)
T 3j2k_7 331 HSGRTFDVQIVIIEHK-----SIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGT 405 (439)
T ss_pred ceeeEEEEEEEEeCCC-----CcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEEEEEeCCe
Confidence 7889999999999987 479999999999999999876531 2357789999999999999999
Q ss_pred eecccC------CeEEEeC
Q psy5021 1009 IAIEIG------LRFAIRE 1021 (1021)
Q Consensus 1009 i~~~~~------~rf~lr~ 1021 (1021)
+|++.| +||+|||
T Consensus 406 ~~~e~~~~~~~~g~f~l~d 424 (439)
T 3j2k_7 406 ICLETFKDFPQMGRFTLRD 424 (439)
T ss_pred EEEeeccccccCCCEEEEE
Confidence 999998 7999996
No 15
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=4.3e-54 Score=496.87 Aligned_cols=376 Identities=66% Similarity=1.036 Sum_probs=324.9
Q ss_pred Ccccccceeeeeeeeeccchhhhhhhccccccccc-cccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh
Q psy5021 646 STDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH 724 (1021)
Q Consensus 646 ~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~ 724 (1021)
......+.++++|++|+|||||+++|++.....+. ..+..++.+|..++|+++|+|++.....++..+..++|||||||
T Consensus 6 ~~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 6 VRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS
T ss_pred cCCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh
Confidence 33445678999999999999999999974222211 12222335799999999999999999899988899999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
++|.+++..+++.+|++|+|+|++++.+.|+++|+.++..+++|++|+++||+|+.++++.++.+.+++.++++.+++..
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG 165 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999888999999998645556667778888888888765
Q ss_pred CceEEEEecccccccCCC--C----CccCcc-hHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEE
Q psy5021 805 ENTKIVIGSALLALEGKD--D----NQLGTT-SIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERG 877 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~--~----~~~~~~-~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G 877 (1021)
.+++++++||++|.+... . ....|+ ++.+|+++|.+.+|.|.+..+.|++++|+++|+++|.|+|++|+|.+|
T Consensus 166 ~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G 245 (405)
T 2c78_A 166 DEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERG 245 (405)
T ss_dssp TTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEEECCBS
T ss_pred cCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEecc
Confidence 668999999999854100 0 012232 378999999998888888889999999999999999999999999999
Q ss_pred EeeCCCEEEEeecCC-eeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeec
Q psy5021 878 IVKNGEEIEIVGYKQ-TIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSK 956 (1021)
Q Consensus 878 ~l~~gd~v~i~p~~~-~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~ 956 (1021)
+|++||+|.+.|.+. ..+++|++|++++.++++|.|||+|++.|++++..++++||+||+++++.++++|+|++.|+++
T Consensus 246 ~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~~~~~~~~f~a~v~~l~~ 325 (405)
T 2c78_A 246 KVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKK 325 (405)
T ss_dssp EEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCTTCEEESTTSSEEEEEEEEEEEECCG
T ss_pred cccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCCCCceeEEEEEEEEEecc
Confidence 999999999998763 2578999999999999999999999999999999999999999998888899999999999998
Q ss_pred cCCCCCccccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 957 EEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 957 ~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
+.++..+||..||++++|+++++++|++.+.+.++.+.+||.+.|+|++.+|+|+++|+||+||+
T Consensus 326 ~~~~~~~~~~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~~~~~~v~~~~~~p~~~~~~~rf~lr~ 390 (405)
T 2c78_A 326 EEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIRE 390 (405)
T ss_dssp GGTSCSSCBCTTCCCEEEETTEEEEEEEECCTTCCCBCTTCEEEEEEEEEEEEEECTTCEEEEEE
T ss_pred cCCCccccccCCceEEEEEcccEEEEEEEEccCccccCCCCEEEEEEEECceEEEccCCEEEEEc
Confidence 64444579999999999999999999888766678999999999999999999999999999995
No 16
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=2.4e-52 Score=510.39 Aligned_cols=369 Identities=73% Similarity=1.129 Sum_probs=311.8
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
...+.++++|++|+|||||+++|++.....+...+..++.+|++++|+++|+|++.....++..+..++|||||||++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 34578899999999999999999975322221222223357889999999999999999999888999999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
++|..+++.+|++|||||+++|.+.|+++|+.++..+++|++||++||+|+.+++++++.+.+++.++++.+++..+.++
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp 453 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTP 453 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccccccee
Confidence 99999999999999999999999999999999999999998899999999986555667777888999998888666789
Q ss_pred EEEecccccccCCCCCccCc-chHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEE
Q psy5021 809 IVIGSALLALEGKDDNQLGT-TSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEI 887 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~-~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i 887 (1021)
++++||++|.++. ..| .++++|+++|.+.++.|.+..+.|++++|+++|+++|.|+|++|+|.+|+|++||+|.+
T Consensus 454 ~IpvSAktG~ng~----~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I 529 (1289)
T 3avx_A 454 IVRGSALKALEGD----AEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI 529 (1289)
T ss_dssp EEECCSTTTTTCC----HHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEE
T ss_pred EEEEEeccCCCCC----ccccccchhhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccEEecCCEEEE
Confidence 9999999885431 123 47899999999988888888889999999999999999999999999999999999999
Q ss_pred eecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccccC
Q psy5021 888 VGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFN 967 (1021)
Q Consensus 888 ~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i~~ 967 (1021)
.|.+...+++|++|++++.++++|.|||+|++.|++++..++++||||++++++.+++.|+|++.+++++.++..+||..
T Consensus 530 ~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~~~~~~~~F~A~V~~L~~~egg~~~pi~~ 609 (1289)
T 3avx_A 530 VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFK 609 (1289)
T ss_dssp ESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEESTTSCCEEEEEEEEEEECCGGGTSCSSCBCT
T ss_pred ecCCCceeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEecCCCCccceeEEEEEEEEccccccccccccC
Confidence 98765467899999999999999999999999999999999999999999888889999999999999764444578999
Q ss_pred CCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 968 GYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 968 G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
||+|++|+++.+++|++.+.+.++.+++||.+.|+|++.+|+|+++|+||+||+
T Consensus 610 G~~p~l~igT~~vtg~I~L~~~~~~L~~Gd~a~V~L~l~~Pi~ve~g~RFiLRd 663 (1289)
T 3avx_A 610 GYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIRE 663 (1289)
T ss_dssp TCCCEEECSSCEEEEEEECCTTCCCBCTTCCCEEEEEEEEEEECCTTCEEEEEE
T ss_pred CCceEEEEeeeeEEEEEEECCCcccccCCCEEEEEEEECceEEEccCCEEEEEe
Confidence 999999999999999988777778999999999999999999999999999995
No 17
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=1e-52 Score=490.69 Aligned_cols=364 Identities=30% Similarity=0.470 Sum_probs=315.1
Q ss_pred ccceeeeeeeeeccchhhhhhhcccccc---------------ccccccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSE---------------IYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~---------------~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
..+.++++|++|+|||||+++|++.... .+.+.+...+.+|+.++|+++|+|++.....++.+++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 3467899999999999999999865211 1222222234568889999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcH-------HHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMP-------QTREHILLARQVGVPNIVVFLNKADCVQ-DKELL 786 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~-------qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~ 786 (1021)
.++|||||||++|.+++..+++.+|++||||||+++.+. |+++|+.++..+++|++|||+||+|+.+ +++++
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~ 165 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRF 165 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHH
Confidence 999999999999999999999999999999999988766 9999999999999988999999999985 35667
Q ss_pred HHHHHHHHHhhhccccCCCceEEEEecccccccCCCCC-ccCcch------------HHHHHHhhhccCCCCCCCCCCCe
Q psy5021 787 DLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDN-QLGTTS------------IKKLLDVLDSSIPTPNRITDKPF 853 (1021)
Q Consensus 787 ~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~-~~~~~~------------i~~Ll~~l~~~l~~~~~~~~~p~ 853 (1021)
+.+.+++.++++.+++..++++++++||++|.+..... ...|+. .+.|+++|.. ++.|.+..+.|+
T Consensus 166 ~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~~p~~~~~~p~ 244 (458)
T 1f60_A 166 QEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSRPTDKPL 244 (458)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SCCCCCCTTSCC
T ss_pred HHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-cCCCcccCCCCc
Confidence 77888899999888876556889999999986654322 123432 4579999876 566778889999
Q ss_pred eEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccce
Q psy5021 854 LMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQ 933 (1021)
Q Consensus 854 ~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~ 933 (1021)
+|+|+++|+++|.|+|++|+|++|.+++||+|.+.|.+ ..++|++|++++.++++|.|||+|++.|++++..++++|+
T Consensus 245 r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i~rG~ 322 (458)
T 1f60_A 245 RLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAG--VTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGN 322 (458)
T ss_dssp EEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTT--EEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTSCTTC
T ss_pred EEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCC--ceEEEeEEEECCeEEEEEcCCCEEEEEEcCCcccccCcee
Confidence 99999999999999999999999999999999999875 4689999999999999999999999999999999999999
Q ss_pred EEeeCC--CccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccC-------------CCcccccCCCe
Q psy5021 934 VLAKIG--SIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLP-------------ENVEMVLPGDN 998 (1021)
Q Consensus 934 vl~~~~--~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~g~~ 998 (1021)
||++++ ++..+++|+|++.|++++ .||..||++++|+++.+++|++... +++++|++||.
T Consensus 323 vl~~~~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~~ 397 (458)
T 1f60_A 323 VCGDAKNDPPKGCASFNATVIVLNHP-----GQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDA 397 (458)
T ss_dssp EEEETTSSCCCCCSEEEEEEEECSCS-----CCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTCE
T ss_pred EEecCCCCCCceeeEEEEEEEEeCCC-----CCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCCCE
Confidence 999985 578999999999999976 5899999999999999999877421 24779999999
Q ss_pred EEEEEEEceeeecccCC------eEEEeC
Q psy5021 999 IKLNVTLLSSIAIEIGL------RFAIRE 1021 (1021)
Q Consensus 999 ~~v~~~~~~pi~~~~~~------rf~lr~ 1021 (1021)
+.|+|++.+|+|+++|+ ||+|||
T Consensus 398 ~~v~~~~~~p~~~~~~~~~~~~grf~lr~ 426 (458)
T 1f60_A 398 ALVKFVPSKPMCVEAFSEYPPLGRFAVRD 426 (458)
T ss_dssp EEEEEEESSCCCCCCTTTCGGGSEEEEEE
T ss_pred EEEEEEECCeEEEecCccCCCCCcEEEEE
Confidence 99999999999999997 999996
No 18
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-52 Score=500.86 Aligned_cols=363 Identities=25% Similarity=0.359 Sum_probs=281.5
Q ss_pred ccceeeeeeeeeccchhhhhhhcccccccc---------------ccccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIY---------------GGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~---------------~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
..+.++++|++|+|||||+|+|++....+. .+.+...+++|..++|+++|+|++.....++++++
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 346789999999999999999975433222 23334456789999999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCC-------cHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-------MPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELL 786 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~-------~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~ 786 (1021)
.++|||||||++|.++|..+++.+|++|||||+++|. ..|+++|+.++..+++|++|||+||||+++ +++++
T Consensus 256 ~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~ 335 (592)
T 3mca_A 256 IYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRF 335 (592)
T ss_dssp ---CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHH
T ss_pred EEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHH
Confidence 9999999999999999999999999999999999865 789999999999999988999999999986 45667
Q ss_pred HHHHHHHHHhh-hccccCCCceEEEEecccccccCCCCC---ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEe
Q psy5021 787 DLVEMEIRELL-TEYDFDGENTKIVIGSALLALEGKDDN---QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFS 862 (1021)
Q Consensus 787 ~~~~~~~~~~l-~~~~~~~~~~~ii~iSa~~~~~~~~~~---~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~ 862 (1021)
+.+.+++..++ +.+++...+++++++||++|.+..... ...|+..++|+++|.+.++ |.+..+.|++++|+++|+
T Consensus 336 ~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~~~~~p~r~~v~~v~~ 414 (592)
T 3mca_A 336 QEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEKPYRKPLRLSIDDVYR 414 (592)
T ss_dssp HHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSCTTTSCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccccccccchheeeEEEe
Confidence 88888999998 888887777899999999986554322 3567778899999998665 667788999999999999
Q ss_pred eCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccc-eeccCceEEEEecccCccCcccceEEeeCCC-
Q psy5021 863 ISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLD-EGLAGENVGILLRSVKREEVERGQVLAKIGS- 940 (1021)
Q Consensus 863 v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~-~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~- 940 (1021)
+ |.|+|++|+|.+|+|++||.|.+.|.+. .++|++|++++.+++ +|.|||+|+|+|++++..++++|||||+++.
T Consensus 415 ~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~--~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~~~ 491 (592)
T 3mca_A 415 S-PRSVTVTGRVEAGNVQVNQVLYDVSSQE--DAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYENP 491 (592)
T ss_dssp E-TTEEEEEEEEEESEEETTCEEEETTTTE--EEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECSSSC
T ss_pred c-CCeEEEEEEEeeeeEccCCEEEEccCCc--eEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEEeccCCCC
Confidence 9 9999999999999999999999998664 589999999999999 9999999999999999999999999999875
Q ss_pred ccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccC----CCcccccCCCeEEEEEE-Eceeeeccc--
Q psy5021 941 IKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLP----ENVEMVLPGDNIKLNVT-LLSSIAIEI-- 1013 (1021)
Q Consensus 941 ~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~----~~~~~l~~g~~~~v~~~-~~~pi~~~~-- 1013 (1021)
+..++.|+|+++|++++ .||..||++++|||+.+++|++.+. +.+++|++||.+.|+|+ +.+|+|++.
T Consensus 492 ~~~~~~f~a~v~~~~~~-----~pi~~g~~~~l~~~t~~~~~~i~l~~~~~~~~~~l~~gd~~~v~l~fl~~p~~~e~~~ 566 (592)
T 3mca_A 492 VRRVRSFVAEIQTFDIH-----GPILSGSTLVLHLGRTVTSVSLKIVTVNNKRSRHIASRKRALVRISFLDGLFPLCLAE 566 (592)
T ss_dssp CEEESEEEEEEEECSCS-----SCEETTEEEEEECSSCEEEEEEEEEESSSSCCSEECSSCEEEEEEEESSSCEEECCTT
T ss_pred ccccCeEEEEEEEECCC-----ccCCCCCEEEEEEcCcEEEEEEEEEeccccchhccCCCCEEEEEEEECCCcEEEEecc
Confidence 67899999999999986 5999999999999999999888553 36889999999999999 999999954
Q ss_pred ----CCeEEEeC
Q psy5021 1014 ----GLRFAIRE 1021 (1021)
Q Consensus 1014 ----~~rf~lr~ 1021 (1021)
++||+||+
T Consensus 567 ~~~~~~rfilr~ 578 (592)
T 3mca_A 567 ECPALGRFILRR 578 (592)
T ss_dssp TCHHHHEEEEES
T ss_pred CCCCCCeEEEEE
Confidence 48999995
No 19
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=1.9e-51 Score=478.19 Aligned_cols=364 Identities=30% Similarity=0.482 Sum_probs=304.0
Q ss_pred ccceeeeeeeeeccchhhhhhhcccccccc---------------ccccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIY---------------GGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~---------------~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
..+..+++|++++|||||+++|++....+. .+.+...+.+|..++|+++|+|++.....+++.+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 346789999999999999999987532221 11222224578899999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCC-------CcHHHHHHHHHHHHcCCCeEEEEEeeccccc---hhh
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-------PMPQTREHILLARQVGVPNIVVFLNKADCVQ---DKE 784 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g-------~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~---~~~ 784 (1021)
.++|||||||++|.+++..+++.+|++|+|+|+++| ...|+++|+.++..+++|++||++||+|+.+ +++
T Consensus 85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~ 164 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEK 164 (435)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHH
T ss_pred EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHH
Confidence 999999999999999999999999999999999998 6679999999999999987999999999986 245
Q ss_pred HHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCC-ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEee
Q psy5021 785 LLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDN-QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSI 863 (1021)
Q Consensus 785 ~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~-~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v 863 (1021)
+++.+.+++.++++.+++....++++++||++|.+..... ...|+..+.|+++|.. ++.|.+..++|++++|+++|++
T Consensus 165 ~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~-~~~p~~~~~~~~~~~v~~v~~~ 243 (435)
T 1jny_A 165 RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LELPPKPVDKPLRIPIQDVYSI 243 (435)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTT-CCCCCCGGGSCCBEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhc-cCCCCCCCCCCeEEEEEEEEEe
Confidence 6777888999999988886666899999999886543221 2345544689999876 5557676789999999999999
Q ss_pred CCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCC-Ccc
Q psy5021 864 SGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG-SIK 942 (1021)
Q Consensus 864 ~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~-~~~ 942 (1021)
+|.|+|++|+|.+|+|++||.|.+.|.+ ..++|++|++++.++++|.|||+|+++|++++..++++||+|++++ ++.
T Consensus 244 ~~~G~v~~g~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~~~~~ 321 (435)
T 1jny_A 244 SGVGTVPVGRVESGVLKVGDKIVFMPAG--KVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPPT 321 (435)
T ss_dssp TTTEEEEEEECCBSCEETTCEEEEETTT--EEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECTTSCCC
T ss_pred CCCcEEEEEEEecCeEEcCCEEEECCce--eEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCCCCCce
Confidence 9999999999999999999999999865 4689999999999999999999999999999999999999999987 578
Q ss_pred ceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccC-------------CCcccccCCCeEEEEEEEceee
Q psy5021 943 SYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLP-------------ENVEMVLPGDNIKLNVTLLSSI 1009 (1021)
Q Consensus 943 ~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~g~~~~v~~~~~~pi 1009 (1021)
.+.+|+|++.|++++ .||..||++++|+++.+++|++... +.++.|++||.+.|+|++.+|+
T Consensus 322 ~~~~f~a~v~~l~~~-----~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~ 396 (435)
T 1jny_A 322 VADEFTARIIVVWHP-----TALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPL 396 (435)
T ss_dssp EESEEEEEEEECCCS-----SCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCE
T ss_pred EeEEEEEEEEEECCC-----CcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEECceE
Confidence 899999999999975 5899999999999999999877431 3467899999999999999999
Q ss_pred ecccCC------eEEEeC
Q psy5021 1010 AIEIGL------RFAIRE 1021 (1021)
Q Consensus 1010 ~~~~~~------rf~lr~ 1021 (1021)
|+++|. ||+|||
T Consensus 397 ~~~~~~~~~~~grf~lr~ 414 (435)
T 1jny_A 397 CVEKYNEFPPLGRFAMRD 414 (435)
T ss_dssp ECCCTTTSGGGTEEEEEE
T ss_pred EEecCCcCCcCccEEEEE
Confidence 999997 999996
No 20
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=7.9e-51 Score=479.34 Aligned_cols=365 Identities=23% Similarity=0.342 Sum_probs=297.9
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccc---------------cccccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEI---------------YGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~---------------~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
..+.++++|++|+|||||+|+|++....+ +.+.+...+.+|....|+++|+|++.....++..+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 34678999999999999999998653222 223334456789999999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCC-------CcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-------PMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELL 786 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g-------~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~ 786 (1021)
.++|||||||++|.+++..+++.+|++|+|||+++| ...|+++|+.++..++++++|||+||+|+.+ .+.++
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~ 191 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRF 191 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHH
Confidence 999999999999999999999999999999999998 4589999999999999888999999999986 35667
Q ss_pred HHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCc----cCcchHHHHHHhhhcc---CCC--CCCCCCCCeeEEE
Q psy5021 787 DLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQ----LGTTSIKKLLDVLDSS---IPT--PNRITDKPFLMPI 857 (1021)
Q Consensus 787 ~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~----~~~~~i~~Ll~~l~~~---l~~--~~~~~~~p~~~~I 857 (1021)
+++.+++..+++.+++....++++++||++|.+...... ..|+..++|++.|... ++. |.+..+.|++|+|
T Consensus 192 ~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~~v 271 (483)
T 3p26_A 192 EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSV 271 (483)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCEEEE
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceEEEE
Confidence 888889999998888876678999999999865543321 3455555565555543 333 5567889999999
Q ss_pred EEEEeeC---CceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecc--------cccceeccCceEEEEecccCc
Q psy5021 858 EDVFSIS---GRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK--------KTLDEGLAGENVGILLRSVKR 926 (1021)
Q Consensus 858 ~~~~~v~---g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~--------~~~~~a~~G~~v~l~l~~~~~ 926 (1021)
+++|+++ |.|+|++|+|++|+|++||.|.+.|.+. +++|++|++++ .++++|.|||+|+|+|++++.
T Consensus 272 ~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~--~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~~ 349 (483)
T 3p26_A 272 LEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQ--SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYP 349 (483)
T ss_dssp EEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTE--EEEEEEEEETTTC-----CCEESCEETTCEEEEEEESCCG
T ss_pred EEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCC--eEEEEEEEEcCccccccccccccEECCCCEEEEEEEeccc
Confidence 9999998 5899999999999999999999998764 58999999995 899999999999999999999
Q ss_pred cCcccceEEeeCCC--ccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeecc------------CCCccc
Q psy5021 927 EEVERGQVLAKIGS--IKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKL------------PENVEM 992 (1021)
Q Consensus 927 ~~i~~G~vl~~~~~--~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~------------~~~~~~ 992 (1021)
.++++|||||+++. +..++.|+|++.|++++ .||..||++++|+++.+++|++.- .+++++
T Consensus 350 ~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~-----~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~~~~~~~ 424 (483)
T 3p26_A 350 EDIQNGDLAASVDYSSIHSAQCFVLELTTFDMN-----RPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRH 424 (483)
T ss_dssp GGCCTTCEEECTTCCCCEECSEEEEEEEECSCS-----SCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEECCSCCSC
T ss_pred ccCCceEEEEcCCCCCCceeeEEEEEEEEECCC-----CCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCcccccCccC
Confidence 99999999998765 78999999999999876 589999999999999999987642 145779
Q ss_pred ccCCCeEEEEEEE---ceeeecccC------CeEEEeC
Q psy5021 993 VLPGDNIKLNVTL---LSSIAIEIG------LRFAIRE 1021 (1021)
Q Consensus 993 l~~g~~~~v~~~~---~~pi~~~~~------~rf~lr~ 1021 (1021)
|++||.|.|+|++ .+|+|++.+ +||+||+
T Consensus 425 l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~ 462 (483)
T 3p26_A 425 LGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRK 462 (483)
T ss_dssp BCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEE
T ss_pred cCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEe
Confidence 9999999999999 789999986 7999985
No 21
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=1.8e-51 Score=481.42 Aligned_cols=360 Identities=26% Similarity=0.374 Sum_probs=279.9
Q ss_pred cceeeeeeeeeccchhhhhhhcccccccc---------------ccccccccccCCchhhhhcCceEeeeEEEEeeCCeE
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIY---------------GGEVRAFDTIDNAPEEKERGITISTSHVEYESENKH 715 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~---------------~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~ 715 (1021)
.+.++++|++|||||||+++|+....... ...+...+.+|..+.|+++|+|++.....++++++.
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 46789999999999999999986432221 111122345799999999999999999999999999
Q ss_pred EEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEeeccccc---hhhH
Q psy5021 716 YAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM-------PQTREHILLARQVGVPNIVVFLNKADCVQ---DKEL 785 (1021)
Q Consensus 716 i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~-------~qt~e~l~~~~~~~ip~iIvviNK~Dl~~---~~~~ 785 (1021)
++|||||||++|.++|..+++.+|++||||||++|.+ .|+++|+.++..+++|++|||+||||+.+ ++++
T Consensus 123 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~ 202 (467)
T 1r5b_A 123 FSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEER 202 (467)
T ss_dssp EEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHH
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHH
Confidence 9999999999999999999999999999999999864 69999999999999998999999999954 3466
Q ss_pred HHHHHHHHHHhhhcc-ccC-CCceEEEEecccccccCCCCC---ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEE
Q psy5021 786 LDLVEMEIRELLTEY-DFD-GENTKIVIGSALLALEGKDDN---QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDV 860 (1021)
Q Consensus 786 ~~~~~~~~~~~l~~~-~~~-~~~~~ii~iSa~~~~~~~~~~---~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~ 860 (1021)
++.+.+++.++++.+ ++. ..+++++++||++|.+..... ...|+....|++.|.. ++.|.+..+.|++++|+++
T Consensus 203 ~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~v~~~ 281 (467)
T 1r5b_A 203 YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDS-MTHLERKVNAPFIMPIASK 281 (467)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHH-CCCCHHHHTSCCEEECCEE
T ss_pred HHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHh-CCCCcCCCCCCcEEEEEEE
Confidence 788888898888887 764 235789999999986654322 3467777778888876 6767677789999999999
Q ss_pred EeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec-ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 861 FSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF-KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 861 ~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~-~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
|+ +.|+|++|+|.+|+|++||.|.+.|.+ ..++|++|+++ +.++++|.|||+|+++|++ +..++++||||++++
T Consensus 282 ~~--~~G~v~~G~v~~G~l~~gd~v~~~p~~--~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~vl~~~~ 356 (467)
T 1r5b_A 282 YK--DLGTILEGKIEAGSIKKNSNVLVMPIN--QTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTSTK 356 (467)
T ss_dssp EE--SSSEEEEEECCBSEEETTEEEEEETTT--EEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTCEEECSS
T ss_pred Ee--CCCeEEEEEEeeeEEeeCCEEEEccCC--eeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCceEEEeCCC
Confidence 87 688999999999999999999999865 45899999998 8999999999999999999 899999999999987
Q ss_pred -CccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeecc-C-----------CCcccccCCCeEEEEEEEc
Q psy5021 940 -SIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKL-P-----------ENVEMVLPGDNIKLNVTLL 1006 (1021)
Q Consensus 940 -~~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~-~-----------~~~~~l~~g~~~~v~~~~~ 1006 (1021)
++..+++|+|++.|++++ ++|..||++++|+|+.+++|+++. . +.+++|++||.+.|+|++.
T Consensus 357 ~~~~~~~~f~a~v~~l~~~-----~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~~~~~~~~~~~~l~~g~~~~v~l~~~ 431 (467)
T 1r5b_A 357 NPVHATTRFIAQIAILELP-----SILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQ 431 (467)
T ss_dssp SCCCEEEEEEEEEEECSSC-----CCBSSCCCBEEESSSCCCCBEESSCCCCCCSSCCCCSSCCSBCCTTCBCCEEEEEE
T ss_pred CCCccceEEEEEEEEeCCC-----CccCCCCEEEEEEeCCEEEEEEEEEEEEecCCccccccCccccCCCCEEEEEEEEC
Confidence 578999999999999986 589999999999999999987642 1 1367899999999999999
Q ss_pred eeeecccC------CeEEEeC
Q psy5021 1007 SSIAIEIG------LRFAIRE 1021 (1021)
Q Consensus 1007 ~pi~~~~~------~rf~lr~ 1021 (1021)
+|+|++.| +||+|||
T Consensus 432 ~p~~~~~~~~~~~~grf~lrd 452 (467)
T 1r5b_A 432 TPVCMERFEDYQYMGRFTLRD 452 (467)
T ss_dssp EEEECCCTTTCHHHHEEEEEC
T ss_pred cEEEEEEcCcCCCCccEEEEE
Confidence 99999999 3999996
No 22
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-50 Score=484.36 Aligned_cols=365 Identities=23% Similarity=0.345 Sum_probs=315.0
Q ss_pred ccceeeeeeeeeccchhhhhhhcccccccc---------------ccccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIY---------------GGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~---------------~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
..+.++++|++|+|||||+|+|++....+. .+.+...+++|....|+++|+|++.....++..+.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 457889999999999999999987543322 23334455678899999999999999999999999
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCC-------CcHHHHHHHHHHHHcCCCeEEEEEeeccccc-hhhHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-------PMPQTREHILLARQVGVPNIVVFLNKADCVQ-DKELL 786 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g-------~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~~~~~ 786 (1021)
.++|||||||++|.+++..+++.+|++|+||||++| ...|+++|+.++..++++++|||+||+|+.+ .+.++
T Consensus 246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~ 325 (611)
T 3izq_1 246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRF 325 (611)
T ss_dssp EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHH
T ss_pred eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHH
Confidence 999999999999999999999999999999999986 4579999999999999998999999999986 34567
Q ss_pred HHHHHHHHHhhhccccCCCceEEEEecccccccCCCCC----ccCcchHHHHHHhhhcc---CCC--CCCCCCCCeeEEE
Q psy5021 787 DLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDN----QLGTTSIKKLLDVLDSS---IPT--PNRITDKPFLMPI 857 (1021)
Q Consensus 787 ~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~----~~~~~~i~~Ll~~l~~~---l~~--~~~~~~~p~~~~I 857 (1021)
+.+.+++..+++.+++....++++++||++|.+..... ...|+..++|++.|... .+. |.+..+.|++|+|
T Consensus 326 ~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r~~V 405 (611)
T 3izq_1 326 EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSV 405 (611)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCEEEC
T ss_pred HHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchhhhe
Confidence 78888899999888887667899999999986554332 15677767777777654 222 4466789999999
Q ss_pred EEEEeeC---CceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecc--------cccceeccCceEEEEecccCc
Q psy5021 858 EDVFSIS---GRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK--------KTLDEGLAGENVGILLRSVKR 926 (1021)
Q Consensus 858 ~~~~~v~---g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~--------~~~~~a~~G~~v~l~l~~~~~ 926 (1021)
+++|+++ |.|+|++|+|.+|+|++||.|.+.|.+. +++|++|++++ .++++|.|||+|+|+|++++.
T Consensus 406 ~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~--~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~ 483 (611)
T 3izq_1 406 LEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQ--SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYP 483 (611)
T ss_dssp CEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTE--EEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCCT
T ss_pred eeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCc--eEEEEEEEEcccccccccccccceecCCCcceEEeeeccH
Confidence 9999998 6899999999999999999999998764 58999999994 899999999999999999999
Q ss_pred cCcccceEEeeCCC--ccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeecc------------CCCccc
Q psy5021 927 EEVERGQVLAKIGS--IKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKL------------PENVEM 992 (1021)
Q Consensus 927 ~~i~~G~vl~~~~~--~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~------------~~~~~~ 992 (1021)
.++++|+|||+++. +..++.|+|++.|++|+ .||..||++++|||+.+++|++.- .+.+++
T Consensus 484 ~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~~~-----~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~~~~~~~ 558 (611)
T 3izq_1 484 EDIQNGDLAASVDYSSIHSAQCFVLELTTFDMN-----RPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRH 558 (611)
T ss_dssp TSCCTTCEEBCSTTCSCCCBSCEEEEEEECSCS-----SCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBCTTCSCS
T ss_pred hhCcceEEccCCCCCCCceeeEEEEEEEEECCC-----CCCCCCCEEEEEECCeEeeEEeeeeeeeecccccccccCccc
Confidence 99999999998765 78999999999999876 589999999999999999987642 135679
Q ss_pred ccCCCeEEEEEEE---ceeeecccC------CeEEEeC
Q psy5021 993 VLPGDNIKLNVTL---LSSIAIEIG------LRFAIRE 1021 (1021)
Q Consensus 993 l~~g~~~~v~~~~---~~pi~~~~~------~rf~lr~ 1021 (1021)
|++|+.|.|+|++ .+|+|++.+ +||+||+
T Consensus 559 l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~ 596 (611)
T 3izq_1 559 LGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRK 596 (611)
T ss_dssp SSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEES
T ss_pred cCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEe
Confidence 9999999999999 789999996 7999995
No 23
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=8.3e-49 Score=456.18 Aligned_cols=360 Identities=23% Similarity=0.318 Sum_probs=301.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccc-----------------cccccccccCCchhhhhcCceEeeeEEEEeeCC
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYG-----------------GEVRAFDTIDNAPEEKERGITISTSHVEYESEN 713 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-----------------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~ 713 (1021)
.+..+++|++|||||||+++|++....+.. ..+...+.+|..++|+++|+|++.....+..++
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 367899999999999999999875422211 111112346888999999999999999999999
Q ss_pred eEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccch-hhHHHHHHHH
Q psy5021 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQD-KELLDLVEME 792 (1021)
Q Consensus 714 ~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~-~~~~~~~~~~ 792 (1021)
..++|||||||++|.+++..+++.+|++|+|+|++++.+.|+++|+.++..++++++|+|+||+|+.++ +++++.+.++
T Consensus 104 ~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~ 183 (434)
T 1zun_B 104 RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKAD 183 (434)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHH
T ss_pred ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999889999999999863 4556777788
Q ss_pred HHHhhhccccCCCceEEEEecccccccCCCCC-ccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEE
Q psy5021 793 IRELLTEYDFDGENTKIVIGSALLALEGKDDN-QLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVT 871 (1021)
Q Consensus 793 ~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~-~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~ 871 (1021)
+.++++.+++....++++++||++|.+..... ...|+..+.|++.|.. ++.|.+..+.|++++|+++++..+.|+.+.
T Consensus 184 ~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~~~~~~v~~v~~~~~~~~g~~ 262 (434)
T 1zun_B 184 YLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILET-VEIASDRNYTDLRFPVQYVNRPNLNFRGFA 262 (434)
T ss_dssp HHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHH-SCCTTCCCSSSCEEECCEEECSSSSCCEEE
T ss_pred HHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhc-CCCcccCCCCCcEEEEEEEeccCCCceEEE
Confidence 88888888754456899999999886544322 3456666667777765 566777778999999999999888888899
Q ss_pred EEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCC-ccceeeEEEE
Q psy5021 872 GKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS-IKSYNIFECE 950 (1021)
Q Consensus 872 G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~~~f~a~ 950 (1021)
|+|.+|+|++||+|.+.|.+. .++|++|++++.++++|.|||+|++++++ ..++++||+|++++. |..+++|+|+
T Consensus 263 G~v~~G~l~~gd~v~~~p~~~--~~~V~~i~~~~~~~~~a~aG~~v~~~l~~--~~~i~~G~~l~~~~~~~~~~~~f~a~ 338 (434)
T 1zun_B 263 GTLASGIVHKGDEIVVLPSGK--SSRVKSIVTFEGELEQAGPGQAVTLTMED--EIDISRGDLLVHADNVPQVSDAFDAM 338 (434)
T ss_dssp EECCBSCEETTCEEEETTTCC--EEEEEEEEETTEEESEECTTCEEEEEESS--CCCCCTTCEEEETTSCCCEEEEEEEE
T ss_pred EEEecceEeCCCEEEEecCCe--EEEEEEEEEcCcceeEecCCCEEEEEeCC--ccccCCccEEECCCCCCCcccEEEEE
Confidence 999999999999999998664 58999999999999999999999999985 568999999999875 5889999999
Q ss_pred EEEeeccCCCCCccccCCCEEEEEEeeceeeeeeccC-----------CCcccccCCCeEEEEEEEceeeecccCC----
Q psy5021 951 VYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLP-----------ENVEMVLPGDNIKLNVTLLSSIAIEIGL---- 1015 (1021)
Q Consensus 951 i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~g~~~~v~~~~~~pi~~~~~~---- 1015 (1021)
+.|++. .||..||++++|+++.+++|++... +.++.|.+||.+.|+|++.+|+|+++|+
T Consensus 339 ~~~l~~------~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~~~~~~~l~~~d~~~v~~~~~~p~~~~~~~~~~~ 412 (434)
T 1zun_B 339 LVWMAE------EPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIALDGYSSNRT 412 (434)
T ss_dssp EEECCS------SCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCCCCCSCBCTTCEEEEEEEEEEEEECCCTTTCTT
T ss_pred EEEecc------ccCCCCCEEEEEEcCCEEEEEEEEEeeeeccccccccCccEeCCCCEEEEEEEECCeEEEcccccCCc
Confidence 999963 4899999999999999999877531 2478899999999999999999999996
Q ss_pred --eEEEeC
Q psy5021 1016 --RFAIRE 1021 (1021)
Q Consensus 1016 --rf~lr~ 1021 (1021)
||+|||
T Consensus 413 ~grf~l~d 420 (434)
T 1zun_B 413 TGAFIVID 420 (434)
T ss_dssp TTEEEEEC
T ss_pred cceEEEEE
Confidence 999985
No 24
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=1.8e-48 Score=440.84 Aligned_cols=323 Identities=18% Similarity=0.265 Sum_probs=280.4
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.++++|++|+|||||+++|+ ++|+|++.....++++++.++|||||||++|.+++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~ 78 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLI 78 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHH
Confidence 88999999999999999998 358899999999999999999999999999999999
Q ss_pred HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEe-eccccchhhHHHHHHHHHHHhhhccccCCCceEEEE
Q psy5021 733 TGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLN-KADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVI 811 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviN-K~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~ 811 (1021)
.+++.+|++|+||| ++|.+.|+++|+.++..+++|.+|+++| |||+ + .+..+...+++.++++.+++ ..+++++
T Consensus 79 ~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~-~~~~~~~~~~i~~~l~~~~~--~~~~ii~ 153 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-H-MHAIDELKAKLKVITSGTVL--QDWECIS 153 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-C-HHHHHHHHHHHHHHTTTSTT--TTCEEEE
T ss_pred HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-C-HHHHHHHHHHHHHHHHhcCC--CceEEEe
Confidence 99999999999999 9999999999999999999996588999 9999 5 44455566788888877654 3579999
Q ss_pred --ecccccccCCCCCccCcchHHHHHHhhhccCCCC---CCC-CCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEE
Q psy5021 812 --GSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP---NRI-TDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885 (1021)
Q Consensus 812 --iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~---~~~-~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v 885 (1021)
+||+++. ...|+++|++.|.+.++.+ ..+ ...|++++|+++|+++|.|+|++|+|++|++++||+|
T Consensus 154 ~~~SA~~~~--------~g~gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v 225 (370)
T 2elf_A 154 LNTNKSAKN--------PFEGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKT 225 (370)
T ss_dssp CCCCTTSSS--------TTTTHHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEE
T ss_pred cccccccCc--------CCCCHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCEE
Confidence 9999820 0148888998888766533 112 3556899999999999999999999999999999999
Q ss_pred EEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEEeeCCCccceeeEEEEEEEeeccCCCCCccc
Q psy5021 886 EIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPF 965 (1021)
Q Consensus 886 ~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~~~~~~~~~~~~i 965 (1021)
.+.|.+ ..++|++|+++++++++|.|||+|+++|++++.+++++||+|++ ++ ..+++|+|++.|++++ .||
T Consensus 226 ~~~p~~--~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~-~~-~~~~~f~a~v~~l~~~-----~~i 296 (370)
T 2elf_A 226 KIFPLD--RDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD-KE-IVTTDYTLECTVSKFT-----KKI 296 (370)
T ss_dssp EEETTT--EEEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES-CC-EEEEEEEEEEEECTTS-----CCB
T ss_pred EECCCC--cEEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC-CC-ceeEEEEEEEEEECCC-----CCC
Confidence 999865 45899999999999999999999999999999999999999999 66 8999999999999985 589
Q ss_pred cCCCEEEEEEeeceeeeeeccC--C--CcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 966 FNGYKPQFYFRTTDVTGICKLP--E--NVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 966 ~~G~~~~~~~~~~~~~~~~~~~--~--~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
..||++++|+++.+++|++... + ..+.+.+||.+.|+|++.+|+|+++|+||+||+
T Consensus 297 ~~g~~~~~~~~t~~~~~~v~~l~~d~~~~~~~~~g~~~~v~l~~~~pi~~~~~~rfilr~ 356 (370)
T 2elf_A 297 EPASVLHLFVGLQSEPVRVEKILVDGNEVEEAKPGSTCVLELSGNKKLAYSKQDRFLLAN 356 (370)
T ss_dssp CTTCEEEEEETTEEEEEEEEEEEETTEEESCBCTTCEEEEEEEEEEEEEECTTSCEEEEC
T ss_pred CCCCEEEEEEcCCEEEEEEEEEEeCCCcceeecCCCEEEEEEEECcEEEEeCCCEEEEEE
Confidence 9999999999999999877643 2 123567999999999999999999999999996
No 25
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=1.2e-49 Score=466.84 Aligned_cols=347 Identities=30% Similarity=0.485 Sum_probs=292.3
Q ss_pred CCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh
Q psy5021 645 YSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH 724 (1021)
Q Consensus 645 ~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~ 724 (1021)
+...++.+.++++|++|+|||||+++|++... ...+|+..+|+++|+|++.....+++++..++|||||||
T Consensus 13 ~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~---------~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh 83 (482)
T 1wb1_A 13 PHMDFKNINLGIFGHIDHGKTTLSKVLTEIAS---------TSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH 83 (482)
T ss_dssp CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEETTEEEEECCCSSH
T ss_pred hhhcCCCCEEEEECCCCChHHHHHHHHHCCCc---------ccccccccccccCccEEecceEEEEECCEEEEEEECCCh
Confidence 34557788999999999999999999987431 124688899999999999999889999999999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc-ccC
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY-DFD 803 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~-~~~ 803 (1021)
++|.+++..+++.+|++|||+|+++|...|+++|+.++..+++| +|+|+||+|+.+ ++.++.+.+++.++++.. ++.
T Consensus 84 ~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip-~IvviNK~Dl~~-~~~~~~~~~~l~~~l~~~~~~~ 161 (482)
T 1wb1_A 84 ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP-IIVVITKSDNAG-TEEIKRTEMIMKSILQSTHNLK 161 (482)
T ss_dssp HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCC-BCEEEECTTSSC-HHHHHHHHHHHHHHHHHSSSGG
T ss_pred HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCC-EEEEEECCCccc-chhHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999 588999999986 445667777888888766 553
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC--CCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP--NRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKN 881 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~--~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~ 881 (1021)
..+++++||++| .|+++|+++|.+.++.| .+..+.|++++|+++|+++|.|+|++|+|.+|.+++
T Consensus 162 --~~~ii~vSA~~g-----------~gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~ 228 (482)
T 1wb1_A 162 --NSSIIPISAKTG-----------FGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKV 228 (482)
T ss_dssp --GCCEEECCTTTC-----------TTHHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCS
T ss_pred --cceEEEEECcCC-----------CCHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEee
Confidence 468999999987 38999999998866555 667788999999999999999999999999999999
Q ss_pred CCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCcccceEE-eeCCCccceeeEEEEEEEeeccCCC
Q psy5021 882 GEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVL-AKIGSIKSYNIFECEVYILSKEEGG 960 (1021)
Q Consensus 882 gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl-~~~~~~~~~~~f~a~i~~~~~~~~~ 960 (1021)
||.+.+.|.+. .++|++|+++++++++|.|||+|++.+++++..++++||+| ++++++.+++.|+|++.|+++.+
T Consensus 229 gd~v~~~p~~~--~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~~~~~~~~~~~a~v~~l~~~~-- 304 (482)
T 1wb1_A 229 GDELKVLPINM--STKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDTKLQTVDKIVAKIKISDIFK-- 304 (482)
T ss_dssp SEEECCTTTCC--CEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTTCCCCCEEEEEECCCCCSSCC--
T ss_pred CCEEEECCCCc--EEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceEecCCCCCceeeEEEEEEEEeccCC--
Confidence 99999998664 47999999999999999999999999999999999999999 77777889999999999998642
Q ss_pred CCccccCCCEEEEEEeeceeeeeeccCC-----------CcccccCCCeEEEEEEEceeeecccCCeEEEeC
Q psy5021 961 RHTPFFNGYKPQFYFRTTDVTGICKLPE-----------NVEMVLPGDNIKLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 961 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~g~~~~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
.||..||++++|+++.+++|++.... .++.|++||.+.|+|++.+|+|+++++||+||+
T Consensus 305 --~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~ 374 (482)
T 1wb1_A 305 --YNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITR 374 (482)
T ss_dssp --SCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEEC
T ss_pred --cccCCCCEEEEEEcccEEEEEEEEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEE
Confidence 58999999999999999998875433 146799999999999999999999999999996
No 26
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=2.3e-46 Score=432.35 Aligned_cols=336 Identities=31% Similarity=0.432 Sum_probs=271.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee---------------C--
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES---------------E-- 712 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~---------------~-- 712 (1021)
..+.++++|+++||||||+++|++.. .++..+|+++|+|++..+..+.. +
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~-------------~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~ 73 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVW-------------TDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNC 73 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCC-------------CCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTS
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc-------------cccCcccccCCcEEEeccccccccccccccccccccccccc
Confidence 45788999999999999999998632 46778899999999877554322 1
Q ss_pred ------CeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeEEEEEeeccccchhhH
Q psy5021 713 ------NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-MPQTREHILLARQVGVPNIVVFLNKADCVQDKEL 785 (1021)
Q Consensus 713 ------~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~ 785 (1021)
.+.++|||||||++|.++|..++..+|++|||+|+++|. ..|+++|+.++..++++++|||+||+|+.+.+.
T Consensus 74 g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~- 152 (408)
T 1s0u_A 74 LAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQ- 152 (408)
T ss_dssp CCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTT-
T ss_pred CcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHH-
Confidence 167999999999999999999999999999999999987 899999999999999877999999999986322
Q ss_pred HHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCC
Q psy5021 786 LDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISG 865 (1021)
Q Consensus 786 ~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g 865 (1021)
.....+++.++++.+. ...++++++||++| .|+++|+++|.+.++.|.+..+.|++++|+++|++++
T Consensus 153 ~~~~~~~i~~~l~~~~--~~~~~~i~vSA~~g-----------~gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~ 219 (408)
T 1s0u_A 153 AEENYEQIKEFVKGTI--AENAPIIPISAHHE-----------ANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINK 219 (408)
T ss_dssp TTTHHHHHHHHHTTST--TTTCCEEEC-----------------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHhhcC--CCCCeEEEeeCCCC-----------CCHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEeecC
Confidence 1122345556665432 23578999999987 3899999999988888888889999999999999875
Q ss_pred --------ceeEEEEEEEEEEeeCCCEEEEeecCC----------eeEEEEEEEEecccccceeccCceEEEEec---cc
Q psy5021 866 --------RGTVVTGKIERGIVKNGEEIEIVGYKQ----------TIKTTITGIEMFKKTLDEGLAGENVGILLR---SV 924 (1021)
Q Consensus 866 --------~G~Vv~G~V~~G~l~~gd~v~i~p~~~----------~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~---~~ 924 (1021)
.|+|++|+|.+|+|++||+|.+.|.+. ...++|++|++++.++++|.|||+|++.++ ++
T Consensus 220 ~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~~~~~~~~ 299 (408)
T 1s0u_A 220 PGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYL 299 (408)
T ss_dssp SSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSSSCEEEECSSCGGG
T ss_pred CCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEECCEEcCEEeCCCeEEEEeccCccc
Confidence 678999999999999999999998532 246899999999999999999999999997 67
Q ss_pred CccCcccceEEeeCCC-ccceeeEEEEEEEeeccCCCC----CccccCCCEEEEEEeeceeeeeeccCCCcccccCCCeE
Q psy5021 925 KREEVERGQVLAKIGS-IKSYNIFECEVYILSKEEGGR----HTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNI 999 (1021)
Q Consensus 925 ~~~~i~~G~vl~~~~~-~~~~~~f~a~i~~~~~~~~~~----~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 999 (1021)
+..++++|+||++++. +...+.|+|++.|+++..+.. ..+|+.||++++|+++.+++|++..... +
T Consensus 300 ~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~-------~-- 370 (408)
T 1s0u_A 300 TKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGVITSARG-------D-- 370 (408)
T ss_dssp TGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTCEEEEEETTEEEEEEEEEEET-------T--
T ss_pred chhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCCEEEEEEcCCEEEEEEEEecC-------C--
Confidence 8889999999999875 567889999999999852221 2689999999999999999987754321 3
Q ss_pred EEEEEEceeeecccCCeEEEeC
Q psy5021 1000 KLNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 1000 ~v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
.+++++.+|+|++.|+||+||+
T Consensus 371 ~~~~~~~~p~~~~~~~~~~~~~ 392 (408)
T 1s0u_A 371 IADIKLKLPICAEIGDRVAISR 392 (408)
T ss_dssp EEEEEEEEEEECCTTCEEEEEE
T ss_pred EEEEEECCcEEecCCCEEEEEE
Confidence 7888999999999999999995
No 27
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=9.1e-46 Score=428.01 Aligned_cols=335 Identities=32% Similarity=0.438 Sum_probs=280.4
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC------------------
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE------------------ 712 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~------------------ 712 (1021)
.+.++++|+++||||||+++|++.. .++.++|+++|+|++..+..+...
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~-------------~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g 76 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVW-------------TDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCG 76 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC-------------CC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCc-------------cccChhhhcCCcEEEEeeeeeecccccccccccccccccccC
Confidence 4678999999999999999998632 477788999999998776544331
Q ss_pred -----CeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHH
Q psy5021 713 -----NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-MPQTREHILLARQVGVPNIVVFLNKADCVQDKELL 786 (1021)
Q Consensus 713 -----~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~ 786 (1021)
...++|||||||++|.++|..++..+|++||||||++|. ..|+++|+.++..++++++|+|+||+|+.+.+ ..
T Consensus 77 ~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~-~~ 155 (410)
T 1kk1_A 77 HETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE-KA 155 (410)
T ss_dssp CBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH-HH
T ss_pred cccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHH-HH
Confidence 167999999999999999999999999999999999997 89999999999999987799999999998733 22
Q ss_pred HHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCC-
Q psy5021 787 DLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISG- 865 (1021)
Q Consensus 787 ~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g- 865 (1021)
....+++.++++... ...++++++||++| .|+++|+++|.+.++.|.+..+.|++++|+++|++++
T Consensus 156 ~~~~~~i~~~l~~~~--~~~~~~i~vSA~~g-----------~gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~ 222 (410)
T 1kk1_A 156 LENYRQIKEFIEGTV--AENAPIIPISALHG-----------ANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKP 222 (410)
T ss_dssp HHHHHHHHHHHTTST--TTTCCEEECBTTTT-----------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCSCC
T ss_pred HHHHHHHHHHHHhcC--cCCCeEEEeeCCCC-----------CCHHHHHHHHHHhCCCCccccCCCcEEEEEEEEeccCC
Confidence 333456666666432 23578999999987 3899999999988888888888999999999998865
Q ss_pred -------ceeEEEEEEEEEEeeCCCEEEEeecCC----------eeEEEEEEEEecccccceeccCceEEEEec---ccC
Q psy5021 866 -------RGTVVTGKIERGIVKNGEEIEIVGYKQ----------TIKTTITGIEMFKKTLDEGLAGENVGILLR---SVK 925 (1021)
Q Consensus 866 -------~G~Vv~G~V~~G~l~~gd~v~i~p~~~----------~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~---~~~ 925 (1021)
.|+|++|+|.+|+|++||+|.+.|.+. ...++|++|+.++.++++|.|||+|++.++ +++
T Consensus 223 g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~~~~v~~a~aG~~v~~~~~~~~~~~ 302 (410)
T 1kk1_A 223 GTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLT 302 (410)
T ss_dssp C----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCGGGT
T ss_pred CccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEECCeEecEEcCCCEEEEEEecCcccc
Confidence 678999999999999999999998542 136899999999999999999999999987 566
Q ss_pred ccCcccceEEeeCCC-ccceeeEEEEEEEeeccCCCC----CccccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEE
Q psy5021 926 REEVERGQVLAKIGS-IKSYNIFECEVYILSKEEGGR----HTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIK 1000 (1021)
Q Consensus 926 ~~~i~~G~vl~~~~~-~~~~~~f~a~i~~~~~~~~~~----~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~ 1000 (1021)
..++.+|+||++++. +..+++|+|++.|+++..+.. ..+|..||++++|+++.+++|++..... + .
T Consensus 303 ~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~-------~--~ 373 (410)
T 1kk1_A 303 KGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLGK-------D--E 373 (410)
T ss_dssp GGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTTCEEEEEETTEEEEEEEEEEET-------T--E
T ss_pred hhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCCCEEEEEEcCCEEeEEEEEecC-------C--E
Confidence 789999999999875 567889999999999852211 2589999999999999999987754321 3 7
Q ss_pred EEEEEceeeecccCCeEEEeC
Q psy5021 1001 LNVTLLSSIAIEIGLRFAIRE 1021 (1021)
Q Consensus 1001 v~~~~~~pi~~~~~~rf~lr~ 1021 (1021)
|+|++.+|+|++.|+||+||+
T Consensus 374 ~~l~~~~p~~~~~~~~~~~~~ 394 (410)
T 1kk1_A 374 IEVKLQIPVCAEPGDRVAISR 394 (410)
T ss_dssp EEEEEEEEEECCTTCEEEEEE
T ss_pred EEEEeCCcEEecCCCEEEEEE
Confidence 888999999999999999995
No 28
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=1.3e-44 Score=417.21 Aligned_cols=347 Identities=26% Similarity=0.315 Sum_probs=276.4
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe-----eCCeEEEEEecCC
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE-----SENKHYAHVDCPG 723 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~-----~~~~~i~liDtpG 723 (1021)
...+.++++|+++||||||+++|++.......+....... .....+..++.+.+.....+. ...+.++||||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIG-VCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEE-ECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCcccccee-eccccccccceecccccccccccccccccceEEEEECCC
Confidence 4567899999999999999999997432221111100000 001112223333322211111 1237899999999
Q ss_pred hhhhHHHHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 724 HADYIKNMITGAAQMDGAILVCSAVDGP-MPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 724 ~~~~~~~~~~~~~~aD~ailVvDa~~g~-~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
|++|.++|..+++.+|++|+|+|++++. +.|+++|+.++..++++++|+|+||+|+.+.+ ......+++.++++.++.
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~-~~~~~~~~i~~~l~~~~~ 163 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE-EALSQYRQIKQFTKGTWA 163 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH-HHHHHHHHHHHHHTTSTT
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchH-HHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999997 89999999999999986699999999998743 233445566677665543
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCC--------ceeEEEEEE
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISG--------RGTVVTGKI 874 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g--------~G~Vv~G~V 874 (1021)
..++++++||++| .|+++|+++|.+.++.|.+..+.|++++|+++|.+.| .|+|++|+|
T Consensus 164 --~~~~ii~vSA~~g-----------~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v 230 (403)
T 3sjy_A 164 --ENVPIIPVSALHK-----------INIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSI 230 (403)
T ss_dssp --TTCCEEECBTTTT-----------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEE
T ss_pred --CCCEEEEEECCCC-----------cChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEE
Confidence 3578999999988 3899999999988888888889999999999999887 799999999
Q ss_pred EEEEeeCCCEEEEeecCC----------eeEEEEEEEEecccccceeccCceEEEEec---ccCccCcccceEEeeCCC-
Q psy5021 875 ERGIVKNGEEIEIVGYKQ----------TIKTTITGIEMFKKTLDEGLAGENVGILLR---SVKREEVERGQVLAKIGS- 940 (1021)
Q Consensus 875 ~~G~l~~gd~v~i~p~~~----------~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~---~~~~~~i~~G~vl~~~~~- 940 (1021)
.+|++++||+|.+.|.+. ..+++|++|+++++++++|.|||+|++.|+ +++..++++|+|||+++.
T Consensus 231 ~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl~~~~~~ 310 (403)
T 3sjy_A 231 IQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLADAE 310 (403)
T ss_dssp EESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCHHHHGGGTTTTCEEEETTCC
T ss_pred EeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCCEEEEEeccccccchhhhccccEEeCCCCC
Confidence 999999999999998653 125899999999999999999999999987 677889999999999886
Q ss_pred ccceeeEEEEEEEeeccCCCC----CccccCCCEEEEEEeeceeeeeeccCCCcccccCCCeEEEEEEEceeeecccCC-
Q psy5021 941 IKSYNIFECEVYILSKEEGGR----HTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGL- 1015 (1021)
Q Consensus 941 ~~~~~~f~a~i~~~~~~~~~~----~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~v~~~~~~pi~~~~~~- 1015 (1021)
|+.++.|+|++.|+++..++. ..||..||++++|+++.+++|++...+. + .++|+|++|+|++.|+
T Consensus 311 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~~~-------~--~~~~~l~~p~~~~~g~~ 381 (403)
T 3sjy_A 311 VPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKK-------D--EIEVELRRPVAVWSNNI 381 (403)
T ss_dssp CCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEECS-------S--EEEEEEEEEEECCSSSC
T ss_pred CcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEecC-------c--eEEEEeCCcEeeccCCE
Confidence 566899999999999742211 3699999999999999999988765432 2 6899999999999999
Q ss_pred eEEE
Q psy5021 1016 RFAI 1019 (1021)
Q Consensus 1016 rf~l 1019 (1021)
||+|
T Consensus 382 r~~i 385 (403)
T 3sjy_A 382 RTVI 385 (403)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
No 29
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.1e-34 Score=312.01 Aligned_cols=184 Identities=22% Similarity=0.379 Sum_probs=148.1
Q ss_pred EEecCCccccCCeeccCCccccccCCcCCCCeEEEEEEeCCC----CC-----HHHHHHHHHHHHHcCCeEEEEEeCCCC
Q psy5021 365 VIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFK----ND-----QEKLLNILQKFCKEDPSLLLSINNNTG 435 (1021)
Q Consensus 365 ~i~gl~~~~~gdtl~~~~~~~~~~~~~~~~Pv~~~~iep~~~----~d-----~~kl~~~L~~L~~eDpsl~~~~~~etg 435 (1021)
+++||+++.+|||||+...+..++++++++|+++++|+|.+. +| ..+|.++|.+|+++||+|+++.+++++
T Consensus 2 av~Gl~~~~iGDTl~~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t~ 81 (332)
T 3e3x_A 2 NATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDPD 81 (332)
T ss_dssp ---------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSSTT
T ss_pred CccCCCCCccCCEEcCCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCCC
Confidence 567899999999999988888899999999999999999987 65 789999999999999999999999999
Q ss_pred cEEEEecChhHHHHHHHHHHhhcCeeeEEeCCeEEEEeecccceeeeeEEEecCCCCceeEEEEEEEeecCCCCCCCceE
Q psy5021 436 ETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIF 515 (1021)
Q Consensus 436 e~il~g~GelhLei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~f 515 (1021)
|++++|||||||||+++||+++ |+++.+++|+|+|||| .
T Consensus 82 ~~~v~G~GELHLeIl~ErLrrE-g~ev~v~~P~V~YrEt--~-------------------------------------- 120 (332)
T 3e3x_A 82 KFRVSGRGELHLSILIENMRRE-GFELAVSRPEVIIXEE--D-------------------------------------- 120 (332)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH-TBCEEECCCEECCEEE--T--------------------------------------
T ss_pred eEEEEeeCHHHHHHHHHHHHhc-CceEEEeCCEEEEEEE--C--------------------------------------
Confidence 9999999999999999999999 9999999999999996 0
Q ss_pred EeccccCCCchhhHHHHHHHHHHHHhcCcccccceEEEEEEEEeeeeccCCCCHHHHHHHHHHHHHHHHHhcCcceeeee
Q psy5021 516 KSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPI 595 (1021)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~g~~~~~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~llEP~ 595 (1021)
| +|||||
T Consensus 121 ---------------------------G----------------------------------------------~llEPi 127 (332)
T 3e3x_A 121 ---------------------------G----------------------------------------------QLMEPF 127 (332)
T ss_dssp ---------------------------T----------------------------------------------EEEEEE
T ss_pred ---------------------------C----------------------------------------------EEECcE
Confidence 0 578999
Q ss_pred EEEEEEcCCccHhhHHHHHHcCCcEEeeeeecC-CeEEEEEEcchhhhccCCcccccceeeeeeeeec
Q psy5021 596 MKVEVNLPSEFLGIVVGDINKKRGIINTIIDHE-NFKIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662 (1021)
Q Consensus 596 ~~~ei~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~a~~P~~e~~~~~~~l~~~t~g~~g~~~~ 662 (1021)
|.++|.||++|+|.||++|++|||++.+++..+ +++.|+|.+|+++++||.++|++.|+|.+.+...
T Consensus 128 ~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~~~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~ 195 (332)
T 3e3x_A 128 ETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHT 195 (332)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHTTCEEEEEEECSSSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEEECHHHHHHHHHHHHhhcccccCceECCCCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEE
Confidence 999999999999999999999999999999885 6889999999999999999999999999887653
No 30
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=3.6e-34 Score=341.02 Aligned_cols=335 Identities=19% Similarity=0.210 Sum_probs=234.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec--------------
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-------------- 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-------------- 72 (1021)
+.++|+|+||+|||||||+++|+........ .+|+|.......+.|..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e------------------~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v 65 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASRE------------------AGGITQHIGATEIPMDVIEGICGDFLKKFSI 65 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcccc------------------CCceecccCeEEEeechhhhhcccccccccc
Confidence 4578999999999999999999854321111 13455444333333321
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHH
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIID 152 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~ 152 (1021)
+.....++|||||||.+|..++.++++.+|++|+|+|+++|+++||.+.|+.+...++|+++|+||+|+.......
T Consensus 66 ~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~---- 141 (594)
T 1g7s_A 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVH---- 141 (594)
T ss_dssp GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCC----
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccc----
Confidence 0012369999999999999999999999999999999999999999999999999999999999999996321000
Q ss_pred HHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCC
Q psy5021 153 IKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN 232 (1021)
Q Consensus 153 i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~ 232 (1021)
.+ .++++.........+..+.+.+.+.++.+++.+++.+
T Consensus 142 ----~~-------------------------------------~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e 180 (594)
T 1g7s_A 142 ----EG-------------------------------------RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESE 180 (594)
T ss_dssp ----TT-------------------------------------CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ----cC-------------------------------------CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchH
Confidence 00 0000000011122334445555555556666555420
Q ss_pred CCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCcccccc-CCCceEEEEEEEeecCCC
Q psy5021 233 YSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINL-NSNKFVSLVFKIFHDPFL 311 (1021)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~-~~~p~~~~V~k~~~~~~~ 311 (1021)
. ...++ ..+..+|++++||++|.|+++|+++|..++|+|.... ... +++|+.++||+++.+++.
T Consensus 181 ~-----~~~l~---~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~-------l~~~~~~p~~~~V~~~~~d~g~ 245 (594)
T 1g7s_A 181 R-----FDRVT---DFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQ-------LKIEEDSPARGTILEVKEETGL 245 (594)
T ss_dssp E-----GGGCS---CTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGG-------GEECTTSBCEEEEEEEEEETTE
T ss_pred H-----HHHHH---hccCcceEEEEeccCCCCchhHHHHHHhhccccchhh-------hccccCCCceeEEEEEEEeCCc
Confidence 0 00000 0145789999999999999999999999888654311 111 578999999999999999
Q ss_pred ceEEEEEEEeeEEecCCEEEeCCCceee--EeceEEEee--------cCCeecccccc--CCCEEEEecCCccccCCeec
Q psy5021 312 GSLSFIRIYSGFIKVGDLVYNSTKKVKE--KIFRILRMF--------ANSKKDINDAH--FGDIVVIVGLKESSTGDTLC 379 (1021)
Q Consensus 312 g~~~~~RV~sG~l~~gd~v~~~~~~~~~--~i~~i~~~~--------g~~~~~v~~a~--aGdIv~i~gl~~~~~gdtl~ 379 (1021)
|.++++||++|+|++||.|++.+.+..+ +|..|+.+. +.+..++++|. +|+++++.||+++.+||||+
T Consensus 246 G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~~~Gd~l~ 325 (594)
T 1g7s_A 246 GMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDVMAGSPLR 325 (594)
T ss_dssp EEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTBCTTCEEE
T ss_pred EEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCCCCCCEEE
Confidence 9999999999999999999988776644 999998873 66788999988 99999999999999999998
Q ss_pred cCCccc--------cccCCcCCCCeEEEEEEeCCCCCHHHHHHHHHHH
Q psy5021 380 SLSENI--------QLENIETPIPVISISIEPIFKNDQEKLLNILQKF 419 (1021)
Q Consensus 380 ~~~~~~--------~~~~~~~~~Pv~~~~iep~~~~d~~kl~~~L~~L 419 (1021)
...... .+..+.+..+.+.+.|.+......+.|.++|+++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 326 VVTDPEKVREEILSEIEDIKIDTDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp ECSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHHHHHHHhcccccccccEEEEeCCCCCHHHHHHHHHhC
Confidence 865331 0122222334445555555555555555555544
No 31
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=4.1e-33 Score=321.54 Aligned_cols=271 Identities=27% Similarity=0.377 Sum_probs=216.8
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccc--ccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEE
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGE--VHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINII 82 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~--~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~li 82 (1021)
....+||+++||+|||||||+++|+.... ..|. .....+.+|..+.|+++|+|+......+.+. ++.++||
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~----~~~~~ii 80 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAA---AENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA----KRHYSHV 80 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHH---HSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS----SCEEEEE
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhh---hcCccccccchhhccCCHHHHHcCCCEEeeeeEeccC----CeEEEEE
Confidence 45678999999999999999999986311 1110 0112346899999999999999887777776 7899999
Q ss_pred cCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCC--HHHHHHHHHHHhCC
Q psy5021 83 DTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGAN--YNNCIIDIKKKFNC 159 (1021)
Q Consensus 83 DtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~--~~~~~~~i~~~l~~ 159 (1021)
|||||.+|...+.++++.+|++|+|+|+++|...|++++|..+...++| +++|+||+|+.... ++...+++++.+
T Consensus 81 DtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l-- 158 (405)
T 2c78_A 81 DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL-- 158 (405)
T ss_dssp ECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH--
T ss_pred ECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999999999999999999999 78999999996411 011111111111
Q ss_pred ceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHH
Q psy5021 160 IVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIK 239 (1021)
Q Consensus 160 ~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~ 239 (1021)
T Consensus 159 -------------------------------------------------------------------------------- 158 (405)
T 2c78_A 159 -------------------------------------------------------------------------------- 158 (405)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCceeEEEeccccCccc------------------HHHHHHHHHHhCCCCccccccCCccccccCCCceEEE
Q psy5021 240 NSIRKLVLKNKIIPIMCGSSLKNKG------------------IEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSL 301 (1021)
Q Consensus 240 ~~~~~~~~~~~~~Pv~~~Sa~~~~G------------------i~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~ 301 (1021)
...-.....+|++++||++|.| +++|+++|.+++|.|... .++|+.++
T Consensus 159 ---~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~-----------~~~p~~~~ 224 (405)
T 2c78_A 159 ---NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRD-----------VDKPFLMP 224 (405)
T ss_dssp ---HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCC-----------CSSCCEEE
T ss_pred ---HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCC-----------CCCCcEEE
Confidence 0000011236899999999987 899999999999988653 57899999
Q ss_pred EEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCc---eeeEeceEEEeecCCeeccccccCCCEEEEe--cC--Ccccc
Q psy5021 302 VFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKK---VKEKIFRILRMFANSKKDINDAHFGDIVVIV--GL--KESST 374 (1021)
Q Consensus 302 V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~---~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~~ 374 (1021)
|++++.++++|+++++||++|+|+.||.|.+.+.+ ...+|.+|... ..++++|.|||++++. |+ +++..
T Consensus 225 v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~ 300 (405)
T 2c78_A 225 VEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRGVSREEVER 300 (405)
T ss_dssp CCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEET----TEEESEEETTCEEEEEESSCCTTTCCT
T ss_pred EEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEEC----CcccCEEcCCCEEEEEECCCcHhhcCc
Confidence 99999999999999999999999999999987766 57889888543 3679999999999985 55 57999
Q ss_pred CCeeccCC
Q psy5021 375 GDTLCSLS 382 (1021)
Q Consensus 375 gdtl~~~~ 382 (1021)
||+|+.+.
T Consensus 301 G~~l~~~~ 308 (405)
T 2c78_A 301 GQVLAKPG 308 (405)
T ss_dssp TCEEESTT
T ss_pred eEEEEcCC
Confidence 99999865
No 32
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=5e-33 Score=322.71 Aligned_cols=278 Identities=23% Similarity=0.273 Sum_probs=218.9
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc------------cc-cCCcccccChHHHhhhCceeeeeeeEEEee
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIG------------EV-HHGTTITDWMQQEQERGITITSASVSIFWE 71 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g------------~~-~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~ 71 (1021)
....+||+++||+|+|||||+++|++.++.+.... .- -+-.+.+|..+.|+++|+|++.....+.+.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 45678999999999999999999999888775422 00 012457899999999999999999888888
Q ss_pred cccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCc-------hhHHHHHHHHhhcCCC-EEEEEeCcCCCC
Q psy5021 72 VNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQ-------PQTETVWFQSQKYKVP-KMIFVNKMDRIG 143 (1021)
Q Consensus 72 ~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~-------~~t~~~~~~~~~~~~p-~iiviNK~D~~~ 143 (1021)
++.++|||||||.+|...+..+++.+|++|+|||+++|+. .|+++++..+...++| +++++||||+..
T Consensus 94 ----~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 ----KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 169 (439)
T ss_pred ----CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcc
Confidence 8899999999999999999999999999999999999976 7999999999999999 889999999975
Q ss_pred CCHH-HHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCH
Q psy5021 144 ANYN-NCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDE 222 (1021)
Q Consensus 144 ~~~~-~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~ 222 (1021)
.++. +..+++.+.+
T Consensus 170 ~~~~~~~~~~i~~~~----------------------------------------------------------------- 184 (439)
T 3j2k_7 170 VNWSNERYEECKEKL----------------------------------------------------------------- 184 (439)
T ss_pred cchHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 4431 1111111111
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHH------------HHHHHHHhCCCCccccccCCccc
Q psy5021 223 FFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEF------------LLNSICEYLPSPYDVDFKNNDYN 290 (1021)
Q Consensus 223 ~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------Ll~~i~~~lP~p~~~~~~~~~~~ 290 (1021)
..|++. + .+.....+|++++||++|.|+++ |++.+ +.+|.|...
T Consensus 185 ---~~~l~~----------~--g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l-~~i~~~~~~-------- 240 (439)
T 3j2k_7 185 ---VPFLKK----------V--GFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYL-DNLPNFNRS-------- 240 (439)
T ss_pred ---HHHHHH----------h--cccccCCeeEEEeeccCCcccccccccccccCchHHHHHH-HhCCCCccC--------
Confidence 000000 0 00001246899999999999988 44444 457766543
Q ss_pred cccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE--ec
Q psy5021 291 INLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VG 368 (1021)
Q Consensus 291 ~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~g 368 (1021)
.++|+...|..++. +.|+++.|||.+|+|++||.|...+.+.+.+|+.|+. ...++++|.|||.+++ .|
T Consensus 241 ---~~~p~r~~v~~~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~----~~~~~~~a~aG~~v~~~l~g 311 (439)
T 3j2k_7 241 ---VDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILS----DDTETDFVAPGENLKIRLKG 311 (439)
T ss_pred ---CCCCeEEEEEEEEc--CCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEE----CCeEcCEecCCCcceEEEec
Confidence 57899999999875 4699999999999999999999999888899999865 3568999999999994 67
Q ss_pred CC--ccccCCeeccCCcc
Q psy5021 369 LK--ESSTGDTLCSLSEN 384 (1021)
Q Consensus 369 l~--~~~~gdtl~~~~~~ 384 (1021)
++ +++.||+|++++.+
T Consensus 312 i~~~~i~rG~vl~~~~~~ 329 (439)
T 3j2k_7 312 IEEEEILPGFILCDPSNL 329 (439)
T ss_pred cchhhcCCcEEecCCCCC
Confidence 66 58899999987643
No 33
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=3.1e-33 Score=321.19 Aligned_cols=268 Identities=25% Similarity=0.355 Sum_probs=213.2
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc-cCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV-HHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~-~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
..||+++||+|||||||+++|+..... .|.. ....+.+|+.+.|+++|+|+......+.+. ++.++||||||
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----~~~~~iiDtpG 75 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAE---GGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA----ARHYAHTDCPG 75 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHH---TTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS----SCEEEEEECSS
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhh---cCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC----CeEEEEEECCC
Confidence 468999999999999999999864211 1110 112345788899999999999887777666 78999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCC--HHHHHHHHHHHhCCceee
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGAN--YNNCIIDIKKKFNCIVLP 163 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~--~~~~~~~i~~~l~~~~~~ 163 (1021)
|.+|...+.++++.+|++|+|+|+++|...|++++|..+...++| +++++||+|+.... ++...+++++.+
T Consensus 76 ~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l------ 149 (397)
T 1d2e_A 76 HADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELL------ 149 (397)
T ss_dssp HHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHH------
Confidence 999999999999999999999999999999999999999999999 57899999986410 011111111111
Q ss_pred eeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHH
Q psy5021 164 INFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIR 243 (1021)
Q Consensus 164 ~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~ 243 (1021)
.
T Consensus 150 -------------------------------------------------------------------------------~ 150 (397)
T 1d2e_A 150 -------------------------------------------------------------------------------T 150 (397)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------H
Confidence 0
Q ss_pred HHHhcCceeEEEeccccCcc---------c-HHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCce
Q psy5021 244 KLVLKNKIIPIMCGSSLKNK---------G-IEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGS 313 (1021)
Q Consensus 244 ~~~~~~~~~Pv~~~Sa~~~~---------G-i~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~ 313 (1021)
..-.....+|++++||++|. | +++|+++|.+++|.|... .++|+.+.|++++.++++|.
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~-----------~~~p~~~~v~~v~~~~~~G~ 219 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRD-----------LEKPFLLPVESVYSIPGRGT 219 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCC-----------TTSCCEEECCEEEEETTTEE
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCCC-----------CCCcEEEEEEEEEEeCCceE
Confidence 00001123689999999976 4 999999999999988653 57899999999999999999
Q ss_pred EEEEEEEeeEEecCCEEEeCCCc--eeeEeceEEEeecCCeeccccccCCCEEEEe--cC--CccccCCeeccCC
Q psy5021 314 LSFIRIYSGFIKVGDLVYNSTKK--VKEKIFRILRMFANSKKDINDAHFGDIVVIV--GL--KESSTGDTLCSLS 382 (1021)
Q Consensus 314 ~~~~RV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~~gdtl~~~~ 382 (1021)
++++||++|+|++||.|.+.+.+ ...+|.+|... ..++++|.|||++++. |+ +++..||+|+.+.
T Consensus 220 v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~ 290 (397)
T 1d2e_A 220 VVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMF----HKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPG 290 (397)
T ss_dssp EEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEET----TEEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred EEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEEC----CcccCEecCCCceEEEecccchhccCceeEEeCCC
Confidence 99999999999999999876653 67788888543 3678999999999885 65 5689999999865
No 34
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=4.7e-33 Score=323.43 Aligned_cols=274 Identities=23% Similarity=0.310 Sum_probs=208.2
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccc---------cccCC----cccccChHHHhhhCceeeeeeeEEEeec
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIG---------EVHHG----TTITDWMQQEQERGITITSASVSIFWEV 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g---------~~~~~----~~~~d~~~~e~~rgiTi~~~~~~~~~~~ 72 (1021)
...+||+++||+|||||||+++|++..+.+...+ +...+ .+++|+.++|+++|+|++.....+.+.
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~- 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK- 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC-
Confidence 5689999999999999999999998866654311 00011 246899999999999999998888887
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-------CchhHHHHHHHHhhcCCC-EEEEEeCcCCCCC
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-------IQPQTETVWFQSQKYKVP-KMIFVNKMDRIGA 144 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-------~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~ 144 (1021)
++.++|||||||.+|...+.++++.+|++|+|+|+++| +..|+++++..+...++| +++++||+|+..+
T Consensus 83 ---~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 83 ---KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp ---SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred ---CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence 89999999999999999999999999999999999999 888999999999988975 8899999999764
Q ss_pred CH-----HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcC
Q psy5021 145 NY-----NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSN 219 (1021)
Q Consensus 145 ~~-----~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 219 (1021)
++ +...+++++.+
T Consensus 160 ~~~~~~~~~~~~~i~~~~-------------------------------------------------------------- 177 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFM-------------------------------------------------------------- 177 (435)
T ss_dssp TTCHHHHHHHHHHHHHHH--------------------------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHH--------------------------------------------------------------
Confidence 32 11122222111
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHH------------HHHHHHHHhCCCCccccccCC
Q psy5021 220 NDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIE------------FLLNSICEYLPSPYDVDFKNN 287 (1021)
Q Consensus 220 ~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~------------~Ll~~i~~~lP~p~~~~~~~~ 287 (1021)
...-.....+|++++||++|.|+. .|+++|.. +|+|...
T Consensus 178 -----------------------~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~-~~~p~~~----- 228 (435)
T 1jny_A 178 -----------------------RSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LELPPKP----- 228 (435)
T ss_dssp -----------------------HHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTT-CCCCCCG-----
T ss_pred -----------------------HHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhc-cCCCCCC-----
Confidence 000000113688999999999986 78898755 5556432
Q ss_pred ccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe
Q psy5021 288 DYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV 367 (1021)
Q Consensus 288 ~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~ 367 (1021)
.+.|+.+.|..++..++.|+++++||++|+|++||.|++.+.+...+|++|... ..++++|.|||++++.
T Consensus 229 ------~~~~~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~ 298 (435)
T 1jny_A 229 ------VDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETH----HTKMDKAEPGDNIGFN 298 (435)
T ss_dssp ------GGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEET----TEEESEECTTCEEEEE
T ss_pred ------CCCCeEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEEC----CcEEeEEcCCCEEEEE
Confidence 357888889999999999999999999999999999999988899999999553 4689999999999983
Q ss_pred --c--CCccccCCeeccCCcc
Q psy5021 368 --G--LKESSTGDTLCSLSEN 384 (1021)
Q Consensus 368 --g--l~~~~~gdtl~~~~~~ 384 (1021)
| .+++.+||+|+....+
T Consensus 299 l~g~~~~~i~~Gd~l~~~~~~ 319 (435)
T 1jny_A 299 VRGVEKKDIKRGDVVGHPNNP 319 (435)
T ss_dssp EESSCGGGCCTTCEEECTTSC
T ss_pred EecCCHHHcCCccEecCCCCC
Confidence 4 4568999999987533
No 35
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.98 E-value=2.7e-32 Score=308.49 Aligned_cols=243 Identities=16% Similarity=0.092 Sum_probs=197.8
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.+||+++||+|||||||+++|+ ++|+|++.....+.|. ++.++|||||||
T Consensus 21 m~~i~iiG~~d~GKSTL~~~L~--------------------------~~giTi~~~~~~~~~~----~~~i~iiDtPGh 70 (370)
T 2elf_A 21 MANVAIIGTEKSGRTSLAANLG--------------------------KKGTSSDITMYNNDKE----GRNMVFVDAHSY 70 (370)
T ss_dssp EEEEEEEESTTSSHHHHHHTTS--------------------------EEEEESSSEEEEECSS----SSEEEEEECTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHH--------------------------hCCEEEEeeEEEEecC----CeEEEEEECCCh
Confidence 4599999999999999999994 5789999888888777 889999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCE-EEEEe-CcCCCCCC-HHHHHHHHHHHhCCceeee
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPK-MIFVN-KMDRIGAN-YNNCIIDIKKKFNCIVLPI 164 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~-iiviN-K~D~~~~~-~~~~~~~i~~~l~~~~~~~ 164 (1021)
.+|...+.++++.+|++|+|+| .+|+..|++++|..+...++|. ++++| |+|+ ..+ .++..+++++.+...
T Consensus 71 ~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~---- 144 (370)
T 2elf_A 71 PKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT---- 144 (370)
T ss_dssp TTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS----
T ss_pred HHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc----
Confidence 9999999999999999999999 9999999999999999999999 88999 9998 432 122333333332110
Q ss_pred eeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHH
Q psy5021 165 NFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRK 244 (1021)
Q Consensus 165 ~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~ 244 (1021)
T Consensus 145 -------------------------------------------------------------------------------- 144 (370)
T 2elf_A 145 -------------------------------------------------------------------------------- 144 (370)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceeEEEe--ccccC---cccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEE
Q psy5021 245 LVLKNKIIPIMC--GSSLK---NKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRI 319 (1021)
Q Consensus 245 ~~~~~~~~Pv~~--~Sa~~---~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV 319 (1021)
....+|+++ +||++ +.|+++|++.|.+++|+|...... ....|+..+|..++..++.|+++++||
T Consensus 145 ---~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~~~~-------~~~~p~r~~v~~vf~~~~~G~v~~g~v 214 (370)
T 2elf_A 145 ---VLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAENAE-------LNSLPARIFIDHAFNVTGKGCVVLGVV 214 (370)
T ss_dssp ---TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHHHHH-------GGGSCCEEEEEEEECCC---CEEEEEE
T ss_pred ---CCCceEEEecccccccCcCCCCHHHHHHHHHhhccccccCCcc-------cccccccccceeEEEcCCCceEEEEEE
Confidence 012468999 99999 999999999999999876221000 013456777888888889999999999
Q ss_pred EeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe--cC--CccccCCeecc
Q psy5021 320 YSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV--GL--KESSTGDTLCS 380 (1021)
Q Consensus 320 ~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~~gdtl~~ 380 (1021)
++|+++.||.|++.+.+...+|.+|.. + ..++++|.|||++++. |+ +++++||+|+.
T Consensus 215 ~~G~l~~gd~v~~~p~~~~~~V~~i~~-~---~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 215 KQGISKDKDKTKIFPLDRDIEIRSIQS-H---DVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp EESEEETTCEEEEETTTEEEEEEEEEE-T---TEEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred ECCEEeeCCEEEECCCCcEEEEeEEEE-C---CCCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 999999999999999899999999854 3 2789999999999996 54 56899999998
No 36
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.98 E-value=1.2e-32 Score=329.49 Aligned_cols=273 Identities=19% Similarity=0.258 Sum_probs=185.1
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccc------------ccc-cCCcccccChHHHhhhCceeeeeeeEEEee
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKI------------GEV-HHGTTITDWMQQEQERGITITSASVSIFWE 71 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~------------g~~-~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~ 71 (1021)
...++||+|+||+|||||||+++|++..+.+... |.- -...+++|..+.|+++|+|++.....+.+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4568999999999999999999999887766432 100 011568899999999999999999888888
Q ss_pred cccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-------chhHHHHHHHHhhcCCC-EEEEEeCcCCCC
Q psy5021 72 VNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-------QPQTETVWFQSQKYKVP-KMIFVNKMDRIG 143 (1021)
Q Consensus 72 ~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-------~~~t~~~~~~~~~~~~p-~iiviNK~D~~~ 143 (1021)
++.++|||||||.+|...+..+++.+|++|+|||+++|. ..|+.+++..+...++| +|+|+||+|+..
T Consensus 254 ----~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 ----KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS 329 (592)
T ss_dssp ---------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGT
T ss_pred ----CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 889999999999999999999999999999999999864 89999999999999998 888999999976
Q ss_pred CCH---HHHHHHHHHHh-CCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcC
Q psy5021 144 ANY---NNCIIDIKKKF-NCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSN 219 (1021)
Q Consensus 144 ~~~---~~~~~~i~~~l-~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 219 (1021)
.+. .....++.+.+ ...
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~----------------------------------------------------------- 350 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMV----------------------------------------------------------- 350 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTS-----------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHhh-----------------------------------------------------------
Confidence 442 22222222222 000
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHH--------------HHHHHHHHhCCCCcccccc
Q psy5021 220 NDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIE--------------FLLNSICEYLPSPYDVDFK 285 (1021)
Q Consensus 220 ~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~--------------~Ll~~i~~~lP~p~~~~~~ 285 (1021)
.+ ....+|++++||++|.|+. .|++.|..++|++..
T Consensus 351 ------------g~--------------~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp~~~---- 400 (592)
T 3mca_A 351 ------------GF--------------KTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKP---- 400 (592)
T ss_dssp ------------CC--------------CGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCCSCT----
T ss_pred ------------CC--------------CccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcccccc----
Confidence 00 0123688999999999997 899999998883322
Q ss_pred CCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccc-cccCCCEE
Q psy5021 286 NNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDIN-DAHFGDIV 364 (1021)
Q Consensus 286 ~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~-~a~aGdIv 364 (1021)
.+.|+.+.|..++.. +.|++..|||.+|+|++||.|...+.+...+|+.|.. ...+++ +|.|||+|
T Consensus 401 --------~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~----~~~~~~~~a~aG~~v 467 (592)
T 3mca_A 401 --------YRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIR----NSDPSSTWAVAGDTV 467 (592)
T ss_dssp --------TTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEEC----SSSCSCCEEETTCEE
T ss_pred --------ccccchheeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEE----cCccCcceecCCCEE
Confidence 578999999999999 8899999999999999999999999888899999874 246799 99999999
Q ss_pred EE--ecCC--ccccCCeeccCCc
Q psy5021 365 VI--VGLK--ESSTGDTLCSLSE 383 (1021)
Q Consensus 365 ~i--~gl~--~~~~gdtl~~~~~ 383 (1021)
++ .|++ ++..||+||.+..
T Consensus 468 ~~~l~~i~~~~i~rG~vl~~~~~ 490 (592)
T 3mca_A 468 TLQLADIEVNQLRPGDILSNYEN 490 (592)
T ss_dssp EEEESSSCGGGCCTTCEEECSSS
T ss_pred EEEEccccccccceEEEeccCCC
Confidence 96 5765 4899999998754
No 37
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.97 E-value=2.5e-31 Score=325.72 Aligned_cols=271 Identities=26% Similarity=0.356 Sum_probs=201.3
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc-cCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV-HHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~-~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
.....||+++||+|||||||+++|+.... ..|.. ....+.+|..+.|+++|+|++.....+.+. ++.++|||
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~---~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~----~~kI~IID 365 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLA---KTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP----TRHYAHVD 365 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHH---HHSCC---------------------CCSCEEEECS----SCEEEEEE
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhc---cccccccccccccccccccccCceeEEEEEEEEcCC----CEEEEEEE
Confidence 34578999999999999999999986421 01100 011236788899999999999988777766 88999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCC--HHHHHHHHHHHhCCc
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGAN--YNNCIIDIKKKFNCI 160 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~--~~~~~~~i~~~l~~~ 160 (1021)
||||.+|...+.++++.+|++|+|||+++|+..|++++|..+...++| +|+|+||+|+.... ++.+.+++++.+
T Consensus 366 TPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elL--- 442 (1289)
T 3avx_A 366 CPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELL--- 442 (1289)
T ss_dssp CCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHH---
T ss_pred CCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHH---
Confidence 999999999999999999999999999999999999999999999999 68899999997421 011111111111
Q ss_pred eeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHH
Q psy5021 161 VLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKN 240 (1021)
Q Consensus 161 ~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~ 240 (1021)
T Consensus 443 -------------------------------------------------------------------------------- 442 (1289)
T 3avx_A 443 -------------------------------------------------------------------------------- 442 (1289)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCceeEEEeccccCc--------ccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCc
Q psy5021 241 SIRKLVLKNKIIPIMCGSSLKN--------KGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLG 312 (1021)
Q Consensus 241 ~~~~~~~~~~~~Pv~~~Sa~~~--------~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g 312 (1021)
.+.-.....+|++++||++| .|+++|+++|.+++|.|... .++|+.+.|..++.++++|
T Consensus 443 --k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~-----------~d~Pfr~pId~Vf~i~G~G 509 (1289)
T 3avx_A 443 --SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERA-----------IDKPFLLPIEDVFSISGRG 509 (1289)
T ss_dssp --HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCG-----------GGSCCEEECCEEEEETTTE
T ss_pred --HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCccc-----------cccceeeeccccccccCCc
Confidence 00000112468999999999 68999999999999988653 4689999999999999999
Q ss_pred eEEEEEEEeeEEecCCEEEeCCCc--eeeEeceEEEeecCCeeccccccCCCEEEEe--cC--CccccCCeeccCC
Q psy5021 313 SLSFIRIYSGFIKVGDLVYNSTKK--VKEKIFRILRMFANSKKDINDAHFGDIVVIV--GL--KESSTGDTLCSLS 382 (1021)
Q Consensus 313 ~~~~~RV~sG~l~~gd~v~~~~~~--~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~~gdtl~~~~ 382 (1021)
+++++||++|+|++||.|...+.+ ...+|+.|.. + ..++++|.|||++++. |+ +++..||+|+.+.
T Consensus 510 tVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~-~---~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~ 581 (1289)
T 3avx_A 510 TVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEM-F---RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 581 (1289)
T ss_dssp EEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEEC-S---SCEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred EEEEEEEeccEEecCCEEEEecCCCceeEEEEEEee-c---CceeeEEecCCcceeEeeecchhcCCcccEEecCC
Confidence 999999999999999999977665 6788888843 2 3578999999999884 66 4689999999865
No 38
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.97 E-value=2.2e-31 Score=311.40 Aligned_cols=274 Identities=23% Similarity=0.287 Sum_probs=184.9
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcc------------ccccc-CCcccccChHHHhhhCceeeeeeeEEEeec
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHK------------IGEVH-HGTTITDWMQQEQERGITITSASVSIFWEV 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~------------~g~~~-~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~ 72 (1021)
...+||+++||+|||||||+++|++.++.+.. .|... .-.+.+|..+.|+++|+|++.....+.+.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 45689999999999999999999988876642 11100 11457899999999999999998888887
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-------chhHHHHHHHHhhcCCC-EEEEEeCcCCCCC
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-------QPQTETVWFQSQKYKVP-KMIFVNKMDRIGA 144 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-------~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~ 144 (1021)
++.++|||||||.+|...+.++++.+|++|+|||+++|+ ..|+++++..+...++| +++++||+|+...
T Consensus 120 ---~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~ 196 (467)
T 1r5b_A 120 ---HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSV 196 (467)
T ss_dssp ---SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTC
T ss_pred ---CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCc
Confidence 899999999999999999999999999999999999997 37999999999999998 8999999999754
Q ss_pred CH-----HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcC
Q psy5021 145 NY-----NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSN 219 (1021)
Q Consensus 145 ~~-----~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 219 (1021)
++ +.+.+++++.+.
T Consensus 197 ~~~~~~~~~i~~e~~~~l~------------------------------------------------------------- 215 (467)
T 1r5b_A 197 QWSEERYKECVDKLSMFLR------------------------------------------------------------- 215 (467)
T ss_dssp SSCHHHHHHHHHHHHHHHH-------------------------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHH-------------------------------------------------------------
Confidence 32 111111111110
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHH--------------HHHHHHHhCCCCcccccc
Q psy5021 220 NDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEF--------------LLNSICEYLPSPYDVDFK 285 (1021)
Q Consensus 220 ~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~--------------Ll~~i~~~lP~p~~~~~~ 285 (1021)
.++ .+.. ..-+|++++||++|.|+.+ |++.| +.+|.|...
T Consensus 216 -------~~~--g~~~-------------~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l-~~i~~~~~~--- 269 (467)
T 1r5b_A 216 -------RVA--GYNS-------------KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYL-DSMTHLERK--- 269 (467)
T ss_dssp -------HHH--CCCH-------------HHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHH-HHCCCCHHH---
T ss_pred -------Hhc--CCCc-------------cCCceEEecccccccccccccccccCccccchhHHHHH-HhCCCCcCC---
Confidence 000 0000 0136899999999999864 55555 557776542
Q ss_pred CCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEE
Q psy5021 286 NNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVV 365 (1021)
Q Consensus 286 ~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~ 365 (1021)
.++|+.+.|..++.+ .|+++.|||.+|+|++||.|...+.+...+|..|+.. ...++++|.|||.++
T Consensus 270 --------~~~p~~~~v~~~~~~--~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~---~~~~~~~a~aG~~v~ 336 (467)
T 1r5b_A 270 --------VNAPFIMPIASKYKD--LGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDE---ADEEISSSICGDQVR 336 (467)
T ss_dssp --------HTSCCEEECCEEEES--SSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECT---TCCEESEEETTCEEE
T ss_pred --------CCCCcEEEEEEEEeC--CCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEecc---CCcEeeEEcCCCEEE
Confidence 468999999998764 6899999999999999999999888888888888542 256799999999999
Q ss_pred E--ec-CCccccCCeeccCCc
Q psy5021 366 I--VG-LKESSTGDTLCSLSE 383 (1021)
Q Consensus 366 i--~g-l~~~~~gdtl~~~~~ 383 (1021)
+ .| .+++..||+|+.+..
T Consensus 337 i~l~g~~~~i~rG~vl~~~~~ 357 (467)
T 1r5b_A 337 LRVRGDDSDVQTGYVLTSTKN 357 (467)
T ss_dssp EEEESCCTTCCTTCEEECSSS
T ss_pred EEEeccHhhCCceEEEeCCCC
Confidence 9 56 567999999998653
No 39
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.97 E-value=1e-30 Score=303.80 Aligned_cols=273 Identities=23% Similarity=0.186 Sum_probs=208.3
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccc------------cccc---CCcccccChHHHhhhCceeeeeeeEEE
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKI------------GEVH---HGTTITDWMQQEQERGITITSASVSIF 69 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~------------g~~~---~~~~~~d~~~~e~~rgiTi~~~~~~~~ 69 (1021)
.+..+||+++||+|||||||+++|++..+.+... |... .....+|..+.|+++|+|++.+...+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 3457899999999999999999999887654321 1100 112357888999999999998888887
Q ss_pred eecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCCHHH
Q psy5021 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGANYNN 148 (1021)
Q Consensus 70 ~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~ 148 (1021)
+. ++.++|||||||.+|...+.++++.+|++|+|+|+++|...|+.+++..+...++| +++|+||+|+...+.+.
T Consensus 101 ~~----~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 101 TA----KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp CS----SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHH
T ss_pred cC----CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHH
Confidence 77 88999999999999999999999999999999999999999999999999888886 78899999997643211
Q ss_pred ---HHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHH
Q psy5021 149 ---CIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFL 225 (1021)
Q Consensus 149 ---~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~ 225 (1021)
..+++++.+.
T Consensus 177 ~~~i~~~~~~~~~------------------------------------------------------------------- 189 (434)
T 1zun_B 177 FESIKADYLKFAE------------------------------------------------------------------- 189 (434)
T ss_dssp HHHHHHHHHHHHH-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 1111111110
Q ss_pred HHHHcCCCCHHHHHHHHHHHHh-cCceeEEEeccccCcccHHH------------HHHHHHHhCCCCccccccCCccccc
Q psy5021 226 EKYINNNYSINDIKNSIRKLVL-KNKIIPIMCGSSLKNKGIEF------------LLNSICEYLPSPYDVDFKNNDYNIN 292 (1021)
Q Consensus 226 e~~l~~~~~~~~~~~~~~~~~~-~~~~~Pv~~~Sa~~~~Gi~~------------Ll~~i~~~lP~p~~~~~~~~~~~~~ 292 (1021)
.+. ....+|++++||++|.|+++ |++. .+.+|.|...
T Consensus 190 -------------------~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~-l~~i~~~~~~---------- 239 (434)
T 1zun_B 190 -------------------GIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEI-LETVEIASDR---------- 239 (434)
T ss_dssp -------------------TTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHH-HHHSCCTTCC----------
T ss_pred -------------------HhCCCccCceEEEEeccCCCCcccccccCccccCchHHHH-HhcCCCcccC----------
Confidence 000 01237899999999999986 5554 4557766542
Q ss_pred cCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCC--
Q psy5021 293 LNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLK-- 370 (1021)
Q Consensus 293 ~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~-- 370 (1021)
.+.|+.+.|..++...+.|+...|||.+|+|++||.|...+.++..+|++|.... .++++|.|||++++...+
T Consensus 240 -~~~~~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~~~ 314 (434)
T 1zun_B 240 -NYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE----GELEQAGPGQAVTLTMEDEI 314 (434)
T ss_dssp -CSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETT----EEESEECTTCEEEEEESSCC
T ss_pred -CCCCcEEEEEEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcC----cceeEecCCCEEEEEeCCcc
Confidence 4678999998888766667778899999999999999999888889999997653 469999999999997544
Q ss_pred ccccCCeeccCCc
Q psy5021 371 ESSTGDTLCSLSE 383 (1021)
Q Consensus 371 ~~~~gdtl~~~~~ 383 (1021)
+++.||+|+....
T Consensus 315 ~i~~G~~l~~~~~ 327 (434)
T 1zun_B 315 DISRGDLLVHADN 327 (434)
T ss_dssp CCCTTCEEEETTS
T ss_pred ccCCccEEECCCC
Confidence 4789999998654
No 40
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.97 E-value=1.2e-30 Score=301.56 Aligned_cols=261 Identities=25% Similarity=0.297 Sum_probs=199.4
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc-----------
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN----------- 73 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~----------- 73 (1021)
....+||+++||+|||||||+++|+. ...|..++|+++|+|+......+.+...
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g---------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~ 71 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTG---------------VWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPV 71 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHT---------------CCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSB
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhC---------------CccccChhhhcCCcEEEEeeeeeeccccccccccccccc
Confidence 35678999999999999999999951 1346677899999999888776665320
Q ss_pred ----cC----ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHHHHhhcCC-CEEEEEeCcCCCC
Q psy5021 74 ----KF----KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQSQKYKV-PKMIFVNKMDRIG 143 (1021)
Q Consensus 74 ----~~----~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~~~~~~~~-p~iiviNK~D~~~ 143 (1021)
+. .+.++|||||||.+|..++.+++..+|++|+|+|+++|. +.||.++|..+...++ |+++|+||+|+..
T Consensus 72 ~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 72 CPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD 151 (410)
T ss_dssp CTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred ccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCC
Confidence 11 278999999999999999999999999999999999998 9999999998887776 6888999999864
Q ss_pred CCH-HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCH
Q psy5021 144 ANY-NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDE 222 (1021)
Q Consensus 144 ~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~ 222 (1021)
.+. .+..+++++.+
T Consensus 152 ~~~~~~~~~~i~~~l----------------------------------------------------------------- 166 (410)
T 1kk1_A 152 KEKALENYRQIKEFI----------------------------------------------------------------- 166 (410)
T ss_dssp HHHHHHHHHHHHHHH-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 321 11122222111
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEE
Q psy5021 223 FFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLV 302 (1021)
Q Consensus 223 ~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V 302 (1021)
++ . ....+|++++||++|.|+++|+++|.+++|.|... .+.|+.++|
T Consensus 167 -------~~--------------~-~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~~-----------~~~~~~~~v 213 (410)
T 1kk1_A 167 -------EG--------------T-VAENAPIIPISALHGANIDVLVKAIEDFIPTPKRD-----------PNKPPKMLV 213 (410)
T ss_dssp -------TT--------------S-TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCC-----------TTSCCEEEE
T ss_pred -------Hh--------------c-CcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCccc-----------cCCCcEEEE
Confidence 00 0 01236899999999999999999999999988653 467889999
Q ss_pred EEEee--------cCCCceEEEEEEEeeEEecCCEEEeCCCce------------eeEeceEEEeecCCeeccccccCCC
Q psy5021 303 FKIFH--------DPFLGSLSFIRIYSGFIKVGDLVYNSTKKV------------KEKIFRILRMFANSKKDINDAHFGD 362 (1021)
Q Consensus 303 ~k~~~--------~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~------------~~~i~~i~~~~g~~~~~v~~a~aGd 362 (1021)
.+++. ++++|.++++||++|+|++||.|.+.+.++ ..+|..|. . ...++++|.|||
T Consensus 214 ~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~---~-~~~~v~~a~aG~ 289 (410)
T 1kk1_A 214 LRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQ---A-GGQFVEEAYPGG 289 (410)
T ss_dssp EEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEE---E-TTEEESEECSSS
T ss_pred EEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEE---E-CCeEecEEcCCC
Confidence 88763 456899999999999999999999865432 34555554 2 257899999999
Q ss_pred EEEEe-cC------CccccCCeeccCC
Q psy5021 363 IVVIV-GL------KESSTGDTLCSLS 382 (1021)
Q Consensus 363 Iv~i~-gl------~~~~~gdtl~~~~ 382 (1021)
++++. ++ .++..|++|+.+.
T Consensus 290 ~v~~~~~~~~~~~~~d~~~G~vl~~~~ 316 (410)
T 1kk1_A 290 LVGVGTKLDPYLTKGDLMAGNVVGKPG 316 (410)
T ss_dssp CEEEEESSCGGGTGGGTTTTCEEECTT
T ss_pred EEEEEEecCcccchhhccceeEEecCC
Confidence 88884 22 2467899998765
No 41
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.97 E-value=9.9e-31 Score=309.90 Aligned_cols=266 Identities=26% Similarity=0.361 Sum_probs=200.3
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-----CeEEEEEecCChhh
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-----NKHYAHVDCPGHAD 726 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-----~~~i~liDtpG~~~ 726 (1021)
.+.+++||+|||||||+++|+.....+..... ..+++|....|+++|+|+......+.+. ...++|||||||.+
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~-~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREK-REQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccc-cccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 46789999999999999999875443332221 2356799999999999998877776553 26789999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
|...+..+++.+|++|+||||++|...|+.++|..+...++| +|+|+||+|+.+.. .+...+++.+. +++. .
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~--~~~v~~el~~~---lg~~--~ 157 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLPSAD--VDRVKKQIEEV---LGLD--P 157 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTSTTCC--HHHHHHHHHHT---SCCC--G
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCccccC--HHHHHHHHHHh---hCCC--c
Confidence 999999999999999999999999999999999999999999 89999999997632 33333444443 3442 1
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEE
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIE 886 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~ 886 (1021)
.+++++||++|. |+++|+++|.+.+|.|....+.|+++.|.+++..++.|+++.|+|.+|++++||.|.
T Consensus 158 ~~vi~vSAktg~-----------GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~ 226 (600)
T 2ywe_A 158 EEAILASAKEGI-----------GIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIM 226 (600)
T ss_dssp GGCEECBTTTTB-----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEE
T ss_pred ccEEEEEeecCC-----------CchHHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEEE
Confidence 348999999884 899999999998988887788999999999999999999999999999999999999
Q ss_pred EeecCCeeEEEEEEEEecc---cccceeccCceEEEEeccc-CccCcccceEEeeCCC
Q psy5021 887 IVGYKQTIKTTITGIEMFK---KTLDEGLAGENVGILLRSV-KREEVERGQVLAKIGS 940 (1021)
Q Consensus 887 i~p~~~~~~~~Vksi~~~~---~~~~~a~~G~~v~l~l~~~-~~~~i~~G~vl~~~~~ 940 (1021)
+.|.+. ..+|+++...+ .+++++.|||.+.+. .++ +..++++||+||+.+.
T Consensus 227 ~~~~~~--~~~v~~i~~~~~~~~~v~~~~aGdi~~v~-~gi~~~~~~~~GDtl~~~~~ 281 (600)
T 2ywe_A 227 LMSTGK--EYEVTEVGAQTPKMTKFDKLSAGDVGYIA-ASIKDVRDIRIGDTITHAKN 281 (600)
T ss_dssp ETTTTE--EEECCEEEEESSSEEEESCEETTCEEEEE-SSCCCTTSSCTTCEEEESSS
T ss_pred eccccc--eEeeecccccCCCceECCEEecCceeeee-ccccchhhccCCCEEEeCCC
Confidence 988654 45677776543 578999999965554 566 4678999999998654
No 42
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.97 E-value=2e-30 Score=305.32 Aligned_cols=281 Identities=21% Similarity=0.223 Sum_probs=203.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccc------------ccc-cCCcccccChHHHhhhCceeeeeeeEEEeec
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKI------------GEV-HHGTTITDWMQQEQERGITITSASVSIFWEV 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~------------g~~-~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~ 72 (1021)
....||+++||+|+|||||+++|++..+.+... |.- -...+++|..+.|+++|+|++.....+.+.
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence 345799999999999999999999887765431 110 112567899999999999999998888887
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-------CchhHHHHHHHHhhcCCC-EEEEEeCcCCCCC
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-------IQPQTETVWFQSQKYKVP-KMIFVNKMDRIGA 144 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-------~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~ 144 (1021)
++.++|||||||.+|...+..+++.+|++|+|+|+++| +..|+.+++..+...++| +|+|+||+|+...
T Consensus 110 ---~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 110 ---RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp ---SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTT
T ss_pred ---CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccc
Confidence 89999999999999999999999999999999999998 678999999999888865 8899999999753
Q ss_pred CHHHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHH
Q psy5021 145 NYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFF 224 (1021)
Q Consensus 145 ~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l 224 (1021)
+.. ..+++.+.+
T Consensus 187 ~~~-~~~~i~~~~------------------------------------------------------------------- 198 (483)
T 3p26_A 187 SQQ-RFEEIKSKL------------------------------------------------------------------- 198 (483)
T ss_dssp CHH-HHHHHHHHH-------------------------------------------------------------------
T ss_pred hHH-HHHHHHHHH-------------------------------------------------------------------
Confidence 321 111111111
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHH------------------HHHHHHHhCCC--Cccccc
Q psy5021 225 LEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEF------------------LLNSICEYLPS--PYDVDF 284 (1021)
Q Consensus 225 ~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~------------------Ll~~i~~~lP~--p~~~~~ 284 (1021)
...+.+.-.....+|++++||++|.|+++ +|+.+...+|. |...
T Consensus 199 --------------~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~-- 262 (483)
T 3p26_A 199 --------------LPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGIN-- 262 (483)
T ss_dssp --------------HHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCC--
T ss_pred --------------HHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhccccccccc--
Confidence 00000000011247899999999999863 45555555554 3322
Q ss_pred cCCccccccCCCceEEEEEEEeecC---CCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEee----cCCeecccc
Q psy5021 285 KNNDYNINLNSNKFVSLVFKIFHDP---FLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMF----ANSKKDIND 357 (1021)
Q Consensus 285 ~~~~~~~~~~~~p~~~~V~k~~~~~---~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~----g~~~~~v~~ 357 (1021)
.+.|+.+.|..++..+ +.|++..|||.+|+|++||.|...+.+...+|+.|.... |..+.++++
T Consensus 263 ---------~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~ 333 (483)
T 3p26_A 263 ---------KDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDV 333 (483)
T ss_dssp ---------SSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESC
T ss_pred ---------CCCceEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccE
Confidence 5689999999999877 479999999999999999999999989899999997653 445688999
Q ss_pred ccCCCEEEE----ecCCccccCCeeccCCc
Q psy5021 358 AHFGDIVVI----VGLKESSTGDTLCSLSE 383 (1021)
Q Consensus 358 a~aGdIv~i----~gl~~~~~gdtl~~~~~ 383 (1021)
|.|||.|++ .+.+++..||+|++.+.
T Consensus 334 a~aG~~v~~~l~~~~~~di~rG~vl~~~~~ 363 (483)
T 3p26_A 334 AIKGDFVTLKLRKAYPEDIQNGDLAASVDY 363 (483)
T ss_dssp EETTCEEEEEEESCCGGGCCTTCEEECTTC
T ss_pred ECCCCEEEEEEEecccccCCceEEEEcCCC
Confidence 999999999 33467899999998765
No 43
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.97 E-value=1.6e-30 Score=303.24 Aligned_cols=273 Identities=25% Similarity=0.318 Sum_probs=215.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccc---------ccccCC----cccccChHHHhhhCceeeeeeeEEEeec
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKI---------GEVHHG----TTITDWMQQEQERGITITSASVSIFWEV 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~---------g~~~~~----~~~~d~~~~e~~rgiTi~~~~~~~~~~~ 72 (1021)
....||+++||+|||||||+++|++..+.+... .+...+ ..++|..+.|+++|+|++.....+.+.
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~- 83 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP- 83 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS-
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC-
Confidence 456899999999999999999999876554321 111112 235688899999999999998888877
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCch-------hHHHHHHHHhhcCCC-EEEEEeCcCCCCC
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQP-------QTETVWFQSQKYKVP-KMIFVNKMDRIGA 144 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~-------~t~~~~~~~~~~~~p-~iiviNK~D~~~~ 144 (1021)
++.++|||||||.+|...+..+++.+|++|+|||+++|... |+.++|..+...++| +++|+||+|+...
T Consensus 84 ---~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 84 ---KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp ---SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTT
T ss_pred ---CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccC
Confidence 88999999999999999999999999999999999998765 999999999889997 8889999999643
Q ss_pred CHH---HHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCC
Q psy5021 145 NYN---NCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNND 221 (1021)
Q Consensus 145 ~~~---~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d 221 (1021)
+.+ ...+++++.+
T Consensus 161 ~~~~~~~i~~~~~~~l---------------------------------------------------------------- 176 (458)
T 1f60_A 161 DESRFQEIVKETSNFI---------------------------------------------------------------- 176 (458)
T ss_dssp CHHHHHHHHHHHHHHH----------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 221 1112221111
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHH------------------------HHHHHHHHhCC
Q psy5021 222 EFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIE------------------------FLLNSICEYLP 277 (1021)
Q Consensus 222 ~~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~------------------------~Ll~~i~~~lP 277 (1021)
...-.....+|++++||++|.|+. .|+++|.. +|
T Consensus 177 ---------------------~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~ 234 (458)
T 1f60_A 177 ---------------------KKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IE 234 (458)
T ss_dssp ---------------------HHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SC
T ss_pred ---------------------HHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-cC
Confidence 000000013678889999999975 58888654 55
Q ss_pred CCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeecccc
Q psy5021 278 SPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDIND 357 (1021)
Q Consensus 278 ~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~ 357 (1021)
.|... .+.|+.++|..++..++.|+++.|||.+|+++.||.|...+.+...+|.+|... ..++++
T Consensus 235 ~p~~~-----------~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~~~~ 299 (458)
T 1f60_A 235 QPSRP-----------TDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMH----HEQLEQ 299 (458)
T ss_dssp CCCCC-----------TTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEET----TEECSC
T ss_pred CCccc-----------CCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEEC----CeEEEE
Confidence 55432 578999999999999999999999999999999999998888888899998642 357899
Q ss_pred ccCCCEEEEe--cC--CccccCCeeccCCc
Q psy5021 358 AHFGDIVVIV--GL--KESSTGDTLCSLSE 383 (1021)
Q Consensus 358 a~aGdIv~i~--gl--~~~~~gdtl~~~~~ 383 (1021)
|.|||.+++. |+ ++++.|++|+....
T Consensus 300 a~aG~~v~i~l~gi~~~~i~rG~vl~~~~~ 329 (458)
T 1f60_A 300 GVPGDNVGFNVKNVSVKEIRRGNVCGDAKN 329 (458)
T ss_dssp BCTTCEEEEEESSCCTTTSCTTCEEEETTS
T ss_pred EcCCCEEEEEEcCCcccccCceeEEecCCC
Confidence 9999999983 65 56899999998753
No 44
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.97 E-value=1.7e-30 Score=302.44 Aligned_cols=144 Identities=21% Similarity=0.265 Sum_probs=105.6
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh----------
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH---------- 724 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~---------- 724 (1021)
+++|++|+|||||+|+|++.... ..+...|+|.+.....++.++..+.||||||+
T Consensus 179 ~lvG~~nvGKSSLin~l~~~~~~---------------~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~ 243 (436)
T 2hjg_A 179 CLIGRPNVGKSSLVNAMLGEERV---------------IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETT 243 (436)
T ss_dssp EEECSTTSSHHHHHHHHHTSTTE---------------EEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCC
T ss_pred EEEcCCCCCHHHHHHHHhCCCce---------------eecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchH
Confidence 45677999999999999985321 12335578888888888889999999999998
Q ss_pred hhhHHH-HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchh-hHHHHHHHHHHHhhhcccc
Q psy5021 725 ADYIKN-MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDK-ELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 725 ~~~~~~-~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~-~~~~~~~~~~~~~l~~~~~ 802 (1021)
++|... +..+++.+|++++|+|++++...|+.+++..+...++| +|+|+||+|+.+.. ...++..+++.+.+....
T Consensus 244 e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~- 321 (436)
T 2hjg_A 244 EKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDHFQFLD- 321 (436)
T ss_dssp SHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGT-
T ss_pred HHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCc-EEEEEECccCCCcchHHHHHHHHHHHHhcccCC-
Confidence 556443 45678999999999999999999999988888888988 99999999998632 223445556655554433
Q ss_pred CCCceEEEEecccccc
Q psy5021 803 DGENTKIVIGSALLAL 818 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~ 818 (1021)
.++++++||++|.
T Consensus 322 ---~~~~~~~SA~tg~ 334 (436)
T 2hjg_A 322 ---YAPILFMSALTKK 334 (436)
T ss_dssp ---TSCEEECCTTTCT
T ss_pred ---CCCEEEEecccCC
Confidence 3689999999884
No 45
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.97 E-value=4.6e-30 Score=305.09 Aligned_cols=266 Identities=26% Similarity=0.369 Sum_probs=195.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-----CeEEEEEecCChhh
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-----NKHYAHVDCPGHAD 726 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-----~~~i~liDtpG~~~ 726 (1021)
...+++||++||||||+++|+.....+..... ..+++|....|+++|+|+......+.+. +..++|||||||.+
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~-~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREM-EAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccc-cccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 46789999999999999999875544433222 3356799999999999999888877664 36889999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
|...+..+++.+|++|+|+|+++|...|+.++|..+...++| +|+|+||+|+.+.. .+...+++.+. +++..
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~--~~~v~~ei~~~---lg~~~-- 155 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDLPAAD--PERVAEEIEDI---VGIDA-- 155 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCC--HHHHHHHHHHH---TCCCC--
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCccccc--HHHHHHHHHHH---hCCCc--
Confidence 999999999999999999999999999999999999999999 89999999997632 33334444444 34322
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEE
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIE 886 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~ 886 (1021)
..++++||++|. |+++|+++|.+.+|.|....+.|+++.|.+++..++.|.++.|+|.+|++++||++.
T Consensus 156 ~~vi~vSAktg~-----------GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~ 224 (599)
T 3cb4_D 156 TDAVRCSAKTGV-----------GVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVK 224 (599)
T ss_dssp TTCEEECTTTCT-----------THHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEE
T ss_pred ceEEEeecccCC-----------CchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEEE
Confidence 247999999873 899999999998988888888999999999999999999999999999999999999
Q ss_pred EeecCCeeEEEEEEEEec---ccccceeccCceEEEEeccc-CccCcccceEEeeCCC
Q psy5021 887 IVGYKQTIKTTITGIEMF---KKTLDEGLAGENVGILLRSV-KREEVERGQVLAKIGS 940 (1021)
Q Consensus 887 i~p~~~~~~~~Vksi~~~---~~~~~~a~~G~~v~l~l~~~-~~~~i~~G~vl~~~~~ 940 (1021)
+.+.++. .+|.++... ..+++++.+||.+ ..+.++ +..++++||+|++.+.
T Consensus 225 ~~~~~~~--~~v~~i~~~~~~~~~~~~~~aGdi~-~~~~gi~~~~~~~~GDtl~~~~~ 279 (599)
T 3cb4_D 225 VMSTGQT--YNADRLGIFTPKQVDRTELKCGEVG-WLVCAIKDIHGAPVGDTLTLARN 279 (599)
T ss_dssp ETTTCCE--EECCEEEEESSSEEECSEECTTCEE-EEECCCSSGGGSCTTCEEEESSS
T ss_pred eccccce--eEEeeeeeccCCceECCEEcCCCee-EeeccccccccCccCCEeeecCC
Confidence 9986654 456666653 3578999999954 445565 4678999999997653
No 46
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.97 E-value=1.9e-29 Score=291.00 Aligned_cols=260 Identities=24% Similarity=0.293 Sum_probs=189.2
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-------------
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV------------- 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~------------- 72 (1021)
+...||+++||+|||||||+++|+. ...|..+.|+++|+|+......+.+..
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g---------------~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~ 70 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTG---------------VWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRC 70 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHS---------------CCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBC
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhC---------------CccccCcccccCCcEEEecccccccccccccccccccccc
Confidence 4578999999999999999999951 134667788999999987765554421
Q ss_pred c--cC----ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHHHHhhcCC-CEEEEEeCcCCCCC
Q psy5021 73 N--KF----KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQSQKYKV-PKMIFVNKMDRIGA 144 (1021)
Q Consensus 73 ~--~~----~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~~~~~~~~-p~iiviNK~D~~~~ 144 (1021)
+ +. .+.++|||||||.+|...+.+++..+|++|+|+|+++|. +.||.+++..+...++ |+++++||+|+...
T Consensus 71 ~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 71 PNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDE 150 (408)
T ss_dssp TTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCT
T ss_pred cccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCH
Confidence 0 11 278999999999999999999999999999999999997 8999999988887776 68899999999754
Q ss_pred CH-HHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHH
Q psy5021 145 NY-NNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEF 223 (1021)
Q Consensus 145 ~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~ 223 (1021)
+. ....+++++.+..
T Consensus 151 ~~~~~~~~~i~~~l~~---------------------------------------------------------------- 166 (408)
T 1s0u_A 151 KQAEENYEQIKEFVKG---------------------------------------------------------------- 166 (408)
T ss_dssp TTTTTHHHHHHHHHTT----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhh----------------------------------------------------------------
Confidence 31 1222222222110
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEE
Q psy5021 224 FLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVF 303 (1021)
Q Consensus 224 l~e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~ 303 (1021)
. ....+|++++||++|.|+++|+++|.+++|.|... .+.|+.++|.
T Consensus 167 ----------------------~-~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~~-----------~~~~~~~~v~ 212 (408)
T 1s0u_A 167 ----------------------T-IAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRD-----------PDATPRMYVA 212 (408)
T ss_dssp ----------------------S-TTTTCCEEEC------CHHHHHHHHHHHSCCCCCC-----------TTSCCEEEEE
T ss_pred ----------------------c-CCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCccc-----------CCCCeEEEEE
Confidence 0 01236789999999999999999999999987543 4678999998
Q ss_pred EEeec--------CCCceEEEEEEEeeEEecCCEEEeCCCc------------eeeEeceEEEeecCCeeccccccCCCE
Q psy5021 304 KIFHD--------PFLGSLSFIRIYSGFIKVGDLVYNSTKK------------VKEKIFRILRMFANSKKDINDAHFGDI 363 (1021)
Q Consensus 304 k~~~~--------~~~g~~~~~RV~sG~l~~gd~v~~~~~~------------~~~~i~~i~~~~g~~~~~v~~a~aGdI 363 (1021)
.++.. +++|.++.+||++|+|++||.|...+.+ ...+|..|+.. ..++++|.|||.
T Consensus 213 ~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~a~~G~~ 288 (408)
T 1s0u_A 213 RSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAG----NTILRKAHPGGL 288 (408)
T ss_dssp EEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEET----TEEESEECSSSC
T ss_pred EEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEEC----CEEcCEEeCCCe
Confidence 88743 3478899999999999999999875432 24678877642 467999999999
Q ss_pred EEEec-----C--CccccCCeeccCC
Q psy5021 364 VVIVG-----L--KESSTGDTLCSLS 382 (1021)
Q Consensus 364 v~i~g-----l--~~~~~gdtl~~~~ 382 (1021)
+++.. + ++++.|++|+.+.
T Consensus 289 v~~~~~~~~~~~~~~~~~G~vl~~~~ 314 (408)
T 1s0u_A 289 IGVGTTLDPYLTKSDALTGSVVGLPG 314 (408)
T ss_dssp EEEECSSCGGGTGGGTTTTCEEESTT
T ss_pred EEEEeccCcccchhhccceeEEECCC
Confidence 99942 2 2477899999865
No 47
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.1e-30 Score=308.39 Aligned_cols=284 Identities=20% Similarity=0.220 Sum_probs=215.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCccc---------cccc----CCcccccChHHHhhhCceeeeeeeEEEeecc
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKI---------GEVH----HGTTITDWMQQEQERGITITSASVSIFWEVN 73 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~---------g~~~----~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~ 73 (1021)
...||+++||+|+|||||+++|++..+.+... .... ...+++|..+.|+++|+|+......+.+.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~-- 243 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-- 243 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS--
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC--
Confidence 35689999999999999999999877665431 1111 12566788999999999999999988888
Q ss_pred cCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC-------CchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCC
Q psy5021 74 KFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-------IQPQTETVWFQSQKYKVP-KMIFVNKMDRIGAN 145 (1021)
Q Consensus 74 ~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g-------~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~ 145 (1021)
++.++|||||||.+|...+..+++.+|++|+|||+++| ...|+.+++..+...++| +|+|+||+|+...+
T Consensus 244 --~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 244 --RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp --SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTC
T ss_pred --CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchh
Confidence 89999999999999999999999999999999999987 578999999999998977 88889999997533
Q ss_pred HHHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHH
Q psy5021 146 YNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFL 225 (1021)
Q Consensus 146 ~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~ 225 (1021)
.. ..+++.+.+
T Consensus 322 ~~-~~~ei~~~l-------------------------------------------------------------------- 332 (611)
T 3izq_1 322 QQ-RFEEIKSKL-------------------------------------------------------------------- 332 (611)
T ss_dssp HH-HHHHHHHHH--------------------------------------------------------------------
T ss_pred HH-HHHHHHHHH--------------------------------------------------------------------
Confidence 21 111111110
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHH---------------HHHHHHHhCCC-CccccccCCcc
Q psy5021 226 EKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEF---------------LLNSICEYLPS-PYDVDFKNNDY 289 (1021)
Q Consensus 226 e~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~---------------Ll~~i~~~lP~-p~~~~~~~~~~ 289 (1021)
...+.+.-.....+|++++||++|.|+.+ |++.|....+. |...+...
T Consensus 333 -------------~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~--- 396 (611)
T 3izq_1 333 -------------LPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGIN--- 396 (611)
T ss_dssp -------------HHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCS---
T ss_pred -------------HHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccc---
Confidence 00000000011246899999999999974 44444333211 11000000
Q ss_pred ccccCCCceEEEEEEEeecC---CCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEee----cCCeeccccccCCC
Q psy5021 290 NINLNSNKFVSLVFKIFHDP---FLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMF----ANSKKDINDAHFGD 362 (1021)
Q Consensus 290 ~~~~~~~p~~~~V~k~~~~~---~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~----g~~~~~v~~a~aGd 362 (1021)
.+.|+...|..++..+ +.|+++.|||.+|+|++||.|...+.+...+|+.|.... |..+.++++|.|||
T Consensus 397 ----~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd 472 (611)
T 3izq_1 397 ----KDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGD 472 (611)
T ss_dssp ----CCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTC
T ss_pred ----cccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCC
Confidence 5689999999999877 479999999999999999999999999999999997652 55678999999999
Q ss_pred EEEE--ec--CCccccCCeeccCCc
Q psy5021 363 IVVI--VG--LKESSTGDTLCSLSE 383 (1021)
Q Consensus 363 Iv~i--~g--l~~~~~gdtl~~~~~ 383 (1021)
+|++ .| ..++..|++|+++..
T Consensus 473 ~v~l~l~~~~~~di~rGdvl~~~~~ 497 (611)
T 3izq_1 473 FVTLKLRKAYPEDIQNGDLAASVDY 497 (611)
T ss_dssp EEEEEESSCCTTSCCTTCEEBCSTT
T ss_pred cceEEeeeccHhhCcceEEccCCCC
Confidence 9999 34 467999999998765
No 48
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.97 E-value=7.9e-30 Score=302.06 Aligned_cols=269 Identities=24% Similarity=0.355 Sum_probs=196.0
Q ss_pred cceeeeeeeeeccchhhhhhhcccccccc------ccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIY------GGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH 724 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~------~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~ 724 (1021)
.-+.|++||++||||||..+|+...+.+. .+.....+++|..+.|++||+|+..+...++|+++.++|||||||
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 45789999999999999999986544432 222223457899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc----
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY---- 800 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~---- 800 (1021)
.+|...+.++++.+|+||+||||.+|+..||+..|.++...++| .|+++||||....+ +....+++.+.+...
T Consensus 111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp-~i~fINK~Dr~~ad--~~~~~~~i~~~l~~~~~p~ 187 (548)
T 3vqt_A 111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATP-VMTFVNKMDREALH--PLDVMADIEQHLQIECAPM 187 (548)
T ss_dssp GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC-EEEEEECTTSCCCC--HHHHHHHHHHHHTSEEEES
T ss_pred HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCc-eEEEEecccchhcc--hhHhhhhhhhhcCCceEeE
Confidence 99999999999999999999999999999999999999999999 78899999986521 223333333332100
Q ss_pred -------------------------------------------------------------------c--------cCCC
Q psy5021 801 -------------------------------------------------------------------D--------FDGE 805 (1021)
Q Consensus 801 -------------------------------------------------------------------~--------~~~~ 805 (1021)
+ ...+
T Consensus 188 ~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~ 267 (548)
T 3vqt_A 188 TWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGE 267 (548)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTS
T ss_pred EeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCC
Confidence 0 0122
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC---------CCCCCeeEEEEEEEee---CCceeEEEEE
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR---------ITDKPFLMPIEDVFSI---SGRGTVVTGK 873 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~---------~~~~p~~~~I~~~~~v---~g~G~Vv~G~ 873 (1021)
-+|+++.||+++. |+..||+.+.+++|.|.. +.+.||...|..++.. +..|.+..+|
T Consensus 268 ~~PV~~gSA~~~~-----------Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~R 336 (548)
T 3vqt_A 268 LTPVFFGSAINNF-----------GVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLR 336 (548)
T ss_dssp EEEEEECBGGGTB-----------SHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEE
T ss_pred cceeeecccccCc-----------CHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEE
Confidence 3678888998774 899999999999998853 2367898888888765 6789999999
Q ss_pred EEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 874 IERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 874 V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
|.+|+|++||.|.....+ .+.+|..+... ..++++|.|||.|++. + ..+++.||+||+.+
T Consensus 337 V~sG~l~~g~~v~~~~~~--~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~--g--l~~~~~GDTl~~~~ 400 (548)
T 3vqt_A 337 ICSGTFTRGMRLKHHRTG--KDVTVANATIFMAQDRTGVEEAFPGDIIGIP--N--HGTIKIGDTFTESK 400 (548)
T ss_dssp EEESCEETTCEEEETTTT--EEEECTTCEECCCSSCCSSCEECTTCEEEEE--C--SSCCCTTCEEESSS
T ss_pred EecceecCCCEEEeeccc--cccccchhhhhccccccccCEEecCCEEEec--C--CccCccCCEecCCC
Confidence 999999999999986433 34566665553 3589999999999875 3 56789999999764
No 49
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.96 E-value=1.3e-29 Score=296.75 Aligned_cols=155 Identities=21% Similarity=0.285 Sum_probs=116.3
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCC----------h
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPG----------H 724 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG----------~ 724 (1021)
+++|.+++|||||+|+|++.... ..+...|+|.+.....++.++..+.|||||| +
T Consensus 199 ~ivG~~~vGKSslin~l~~~~~~---------------~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~ 263 (456)
T 4dcu_A 199 CLIGRPNVGKSSLVNAMLGEERV---------------IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETT 263 (456)
T ss_dssp EEECSTTSSHHHHHHHHHTSTTE---------------EECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCC
T ss_pred EEecCCCCCHHHHHHHHhCCCcc---------------ccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHH
Confidence 35567999999999999974321 1233457788888788888999999999999 6
Q ss_pred hhhHHH-HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccch-hhHHHHHHHHHHHhhhcccc
Q psy5021 725 ADYIKN-MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQD-KELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 725 ~~~~~~-~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~-~~~~~~~~~~~~~~l~~~~~ 802 (1021)
++|... +..++..+|++|+|+|++++...++.+++.++...++| +|+|+||+|+.+. ....++..+.+.+.+...++
T Consensus 264 e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 342 (456)
T 4dcu_A 264 EKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDY 342 (456)
T ss_dssp SHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTT
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEEChhcCCCchHHHHHHHHHHHHhcccCCC
Confidence 777654 45678999999999999999999999999999999988 9999999999862 33455566666666655443
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++++||++|. |+++|++.+.+
T Consensus 343 ----~~~~~~SA~~g~-----------gv~~l~~~i~~ 365 (456)
T 4dcu_A 343 ----APILFMSALTKK-----------RIHTLMPAIIK 365 (456)
T ss_dssp ----SCEEECCTTTCT-----------TGGGHHHHHHH
T ss_pred ----CCEEEEcCCCCc-----------CHHHHHHHHHH
Confidence 689999999884 56666655544
No 50
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.96 E-value=2.3e-31 Score=308.68 Aligned_cols=253 Identities=24% Similarity=0.262 Sum_probs=195.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+.++|+++||+|||||||+++|+...- .. ...+|+|++.....+.|. ++.++|||||
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v--------~~----------~e~~GIT~~i~~~~v~~~----~~~i~~iDTP 59 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKV--------AS----------GEAGGITQHIGAYHVETE----NGMITFLDTP 59 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHH--------SB----------TTBCCCCCCSSCCCCCTT----SSCCCEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCC--------cc----------ccCCCeeEeEEEEEEEEC----CEEEEEEECC
Confidence 4678999999999999999999974321 10 123688888777666666 7789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeee
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN 165 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 165 (1021)
||.+|...+.++++.+|++|+|+|+++|+.+||.++|..+...++|+++++||+|++.++.+++.. .+..
T Consensus 60 Ghe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~----~l~~------ 129 (501)
T 1zo1_I 60 GHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKN----ELSQ------ 129 (501)
T ss_dssp TTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTC----CCCC------
T ss_pred CcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHH----HHHH------
Confidence 999999999999999999999999999999999999999999999999999999997654321100 0000
Q ss_pred eecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHH
Q psy5021 166 FNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKL 245 (1021)
Q Consensus 166 ~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~ 245 (1021)
. .+..++
T Consensus 130 ------------------------------------------------------~-----------~~~~~~-------- 136 (501)
T 1zo1_I 130 ------------------------------------------------------Y-----------GILPEE-------- 136 (501)
T ss_dssp ------------------------------------------------------C-----------CCCTTC--------
T ss_pred ------------------------------------------------------h-----------hhhHHH--------
Confidence 0 000000
Q ss_pred HhcCceeEEEeccccCcccHHHHHHHHHHhCC--CCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeE
Q psy5021 246 VLKNKIIPIMCGSSLKNKGIEFLLNSICEYLP--SPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGF 323 (1021)
Q Consensus 246 ~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP--~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~ 323 (1021)
.+..+|++++||++|.|+++|+++|..... .+... ++.|+.++|++++.+++.|.++++||++|+
T Consensus 137 --~~~~~~~v~vSAktG~gI~eLle~I~~~~~~~~~~~~-----------~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gt 203 (501)
T 1zo1_I 137 --WGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAV-----------RKGMASGAVIESFLDKGRGPVATVLVREGT 203 (501)
T ss_dssp --CSSSCEEEECCTTTCTTCTTHHHHTTTTCCCSTTTSC-----------CCSBCEEEEEEEEECSSSSEEEEEEEEESB
T ss_pred --hCCCccEEEEeeeeccCcchhhhhhhhhhhhhccccc-----------cccccccceEEEEEeCCcEEEEEEEEEeeE
Confidence 012378999999999999999999976432 11111 567899999999999999999999999999
Q ss_pred EecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCcc-ccCCeeccC
Q psy5021 324 IKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKES-STGDTLCSL 381 (1021)
Q Consensus 324 l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~gdtl~~~ 381 (1021)
|+.||.+.+.+. ..++..+......++++|.||+.+.+.|+++. ..||+++..
T Consensus 204 lk~Gd~v~~g~~-----~~kVr~i~~~~g~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~ 257 (501)
T 1zo1_I 204 LHKGDIVLCGFE-----YGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVV 257 (501)
T ss_dssp CCTTCEEEEEBS-----SCEEEEECCTTTTSEEEECCSSCSSSEEECSCCCTTEEEEEE
T ss_pred EecCCEEEEccc-----eeEEEEEEecCCCcCcEeccCCcEEEeCCCCCCCCCCEEEec
Confidence 999999987442 23344444444467899999999999999884 789999753
No 51
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.96 E-value=5.7e-30 Score=299.95 Aligned_cols=257 Identities=26% Similarity=0.333 Sum_probs=192.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+-.||+++||+|||||||+++|+... ....+|..+.|+++|+|++.....+.+. ++.++||||||
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~-----------~~~~~d~~~~e~~~GiTi~~~~~~~~~~----~~~i~iiDtPG 82 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIA-----------STSAHDKLPESQKRGITIDIGFSAFKLE----NYRITLVDAPG 82 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC-------------------------------CCCEEEET----TEEEEECCCSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCC-----------cccccccccccccCccEEecceEEEEEC----CEEEEEEECCC
Confidence 35789999999999999999996321 1245788889999999999998888887 89999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCC-HHHHHHHHHHHhCCceeeee
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGAN-YNNCIIDIKKKFNCIVLPIN 165 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~ 165 (1021)
|.+|...+.++++.+|++|+|+|+++|++.|+.+++..+...++|.++|+||+|+...+ ++...+++++.+
T Consensus 83 h~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l-------- 154 (482)
T 1wb1_A 83 HADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSIL-------- 154 (482)
T ss_dssp HHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHH--------
Confidence 99999999999999999999999999999999999999999999999999999996421 111122221111
Q ss_pred eecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHH
Q psy5021 166 FNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKL 245 (1021)
Q Consensus 166 ~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~ 245 (1021)
...
T Consensus 155 -----------------------------------------------------------------------------~~~ 157 (482)
T 1wb1_A 155 -----------------------------------------------------------------------------QST 157 (482)
T ss_dssp -----------------------------------------------------------------------------HHS
T ss_pred -----------------------------------------------------------------------------hhh
Confidence 000
Q ss_pred HhcCceeEEEeccccCcccHHHHHHHHHHhCCCC--ccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeE
Q psy5021 246 VLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSP--YDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGF 323 (1021)
Q Consensus 246 ~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p--~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~ 323 (1021)
..-...|++++||++|.|+++|+++|.+.+|.| ... .++|+.+.|..++..++.|.++.+||.+|+
T Consensus 158 -~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~~~~-----------~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~ 225 (482)
T 1wb1_A 158 -HNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRN-----------TESYFKMPLDHAFPIKGAGTVVTGTINKGI 225 (482)
T ss_dssp -SSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHSCCCCC-----------SSSCCBCBCSCEECCSSCCCEECCCCCBSC
T ss_pred -cccccceEEEEECcCCCCHHHHHHHHHHhhcCcccccc-----------ccccccccceeEEEecCCceEEEEEEEEeE
Confidence 000135789999999999999999999988755 221 456888888888888999999999999999
Q ss_pred EecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEe--cCC--ccccCCeec
Q psy5021 324 IKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV--GLK--ESSTGDTLC 379 (1021)
Q Consensus 324 l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl~--~~~~gdtl~ 379 (1021)
+++||.|...+.+...+|..|.. + ..++++|.|||.+++. |++ ++..||+|+
T Consensus 226 l~~gd~v~~~p~~~~~~V~~i~~-~---~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~ 281 (482)
T 1wb1_A 226 VKVGDELKVLPINMSTKVRSIQY-F---KESVMEAKAGDRVGMAIQGVDAKQIYRGXILT 281 (482)
T ss_dssp CCSSEEECCTTTCCCEEECCBCG-G---GSCBCCCCSSCCCCEECSSCCSSCCCSSCBCC
T ss_pred EeeCCEEEECCCCcEEEEeEEEE-C---CeEeeEecCCCEEEEEecCCCHhhccccceEe
Confidence 99999999988887888888853 2 3578999999999884 754 478999994
No 52
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.96 E-value=1.1e-27 Score=278.90 Aligned_cols=155 Identities=23% Similarity=0.271 Sum_probs=106.1
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH----
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN---- 730 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~---- 730 (1021)
+++|.+|+|||||+|+|++..... .....|+|.+.....+..++..+.+|||||+.++...
T Consensus 184 aivG~~gvGKSTLln~l~g~~~~~---------------v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~ 248 (439)
T 1mky_A 184 AIVGRPNVGKSTLFNAILNKERAL---------------VSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRT 248 (439)
T ss_dssp EEECSTTSSHHHHHHHHHTSTTEE---------------ECCCC------CCEEEEETTEEEEESSCSCC----------
T ss_pred EEECCCCCCHHHHHHHHhCCcccc---------------cCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhh
Confidence 566779999999999999854221 1233477877777778888999999999998654322
Q ss_pred --------HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhh-HHHHHHHHHHHhhhccc
Q psy5021 731 --------MITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKE-LLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 731 --------~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~-~~~~~~~~~~~~l~~~~ 801 (1021)
...++..+|++++|+|++++...+....+..+...+.| +++|+||+|+.+... ..++..+++.+.+...+
T Consensus 249 ~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 327 (439)
T 1mky_A 249 VEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRA-SVVVFNKWDLVVHREKRYDEFTKLFREKLYFID 327 (439)
T ss_dssp -CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCCCchhhHHHHHHHHHHHHhccCC
Confidence 24567889999999999998888877777777788988 999999999976322 23444444444443333
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..+++++||++|. ++++|++.+.+
T Consensus 328 ----~~~~~~~SA~~g~-----------gv~~l~~~i~~ 351 (439)
T 1mky_A 328 ----YSPLIFTSADKGW-----------NIDRMIDAMNL 351 (439)
T ss_dssp ----TSCEEECBTTTTB-----------SHHHHHHHHHH
T ss_pred ----CCcEEEEECCCCC-----------CHHHHHHHHHH
Confidence 2579999999884 67777776654
No 53
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.96 E-value=1.9e-28 Score=282.10 Aligned_cols=273 Identities=26% Similarity=0.287 Sum_probs=195.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEEcC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINIIDT 84 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~liDt 84 (1021)
....||+++||+|||||||+++|+...... ..|.. ..+.......+..++++.........+.. ....+.++||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSK-KLGYA--ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCS-SSEEE--EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccc-ccCcc--ccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 445799999999999999999997422111 00100 01111112222344444433222111110 111378999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCC-chhHHHHHHHHhhcCC-CEEEEEeCcCCCCCC-HHHHHHHHHHHhCCce
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQSQKYKV-PKMIFVNKMDRIGAN-YNNCIIDIKKKFNCIV 161 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t~~~~~~~~~~~~-p~iiviNK~D~~~~~-~~~~~~~i~~~l~~~~ 161 (1021)
|||.+|...+..+++.+|++|+|+|++++. ..|+.+++..+...+. |+++|+||+|+...+ ..+..+++.+.+..
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~-- 160 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG-- 160 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT--
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999999997 9999999998887775 899999999986432 11122222221100
Q ss_pred eeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHH
Q psy5021 162 LPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNS 241 (1021)
Q Consensus 162 ~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~ 241 (1021)
T Consensus 161 -------------------------------------------------------------------------------- 160 (403)
T 3sjy_A 161 -------------------------------------------------------------------------------- 160 (403)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEee--------cCCCce
Q psy5021 242 IRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFH--------DPFLGS 313 (1021)
Q Consensus 242 ~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~--------~~~~g~ 313 (1021)
.....+|++++||++|.|+++|+++|.+++|.|... .+.|+.++|.+++. ++++|.
T Consensus 161 -----~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~-----------~~~~~~~~v~~~~~v~~~~~~~~~~~G~ 224 (403)
T 3sjy_A 161 -----TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRD-----------LSQKPVMLVIRSFDVNKPGTQFNELKGG 224 (403)
T ss_dssp -----STTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCC-----------TTSCCEEEEEEEECCCCTTCCSSSCCCC
T ss_pred -----hCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCC-----------CCCCcEEEEEEEEeecCCCcccccCcCc
Confidence 001236899999999999999999999999988653 56899999998875 445899
Q ss_pred EEEEEEEeeEEecCCEEEeCCCce------------eeEeceEEEeecCCeeccccccCCCEEEEe-----cC--Ccccc
Q psy5021 314 LSFIRIYSGFIKVGDLVYNSTKKV------------KEKIFRILRMFANSKKDINDAHFGDIVVIV-----GL--KESST 374 (1021)
Q Consensus 314 ~~~~RV~sG~l~~gd~v~~~~~~~------------~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~-----gl--~~~~~ 374 (1021)
++++||++|+++.||.|.+.+.++ ..+|..|.. ...++++|.|||++++. ++ +++..
T Consensus 225 v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~----~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~ 300 (403)
T 3sjy_A 225 VIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRF----GDEEFKEAKPGGLVAIGTYLDPSLTKADNLL 300 (403)
T ss_dssp EEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE----TTEEESEECSSSCEEEEESSCHHHHGGGTTT
T ss_pred EEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEE----CCEEcCEEeCCCEEEEEeccccccchhhhcc
Confidence 999999999999999999865543 457777765 35689999999999983 22 35778
Q ss_pred CCeeccCCc
Q psy5021 375 GDTLCSLSE 383 (1021)
Q Consensus 375 gdtl~~~~~ 383 (1021)
|++|+.++.
T Consensus 301 G~vl~~~~~ 309 (403)
T 3sjy_A 301 GSIITLADA 309 (403)
T ss_dssp TCEEEETTC
T ss_pred ccEEeCCCC
Confidence 999998653
No 54
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=252.36 Aligned_cols=164 Identities=24% Similarity=0.344 Sum_probs=147.6
Q ss_pred CCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccC
Q psy5021 849 TDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREE 928 (1021)
Q Consensus 849 ~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~ 928 (1021)
.++||||+|+++|+ |.|+|++|+|++|++++||+|.+.|++ .+++|+||+++++++++|.|||+|+|+|++++..+
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~--~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~d 78 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNK--HNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEE 78 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTT--EEEEEEEECSSSSCBSEECTTSEEEEEEEESSSSC
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCC--CEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHHH
Confidence 57899999999998 899999999999999999999999875 56899999999999999999999999999999999
Q ss_pred cccceEEeeCCC-ccceeeEEEEEEEeeccCCCCCccccCCCEEEEEEeeceeeeeec-c------------CCCccccc
Q psy5021 929 VERGQVLAKIGS-IKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICK-L------------PENVEMVL 994 (1021)
Q Consensus 929 i~~G~vl~~~~~-~~~~~~f~a~i~~~~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~-~------------~~~~~~l~ 994 (1021)
+++|||||+++. |..+++|+|++.||+++ .+|..||++++|+|+.+++|++. + ...+++|+
T Consensus 79 i~rG~vl~~~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~ 153 (204)
T 3e1y_E 79 ILPGFILCDPNNLCHSGRTFDAQIVIIEHK-----SIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVK 153 (204)
T ss_dssp CCTTCEEBCSSSCCCCCSEEEEEEECCSCC-----SCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCC
T ss_pred CccceEEECCCCCCchhEEEEEEEEEeCCC-----CccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcC
Confidence 999999999875 57899999999999986 48999999999999999998764 2 12357899
Q ss_pred CCCeEEEEEEEceeeecccC------CeEEEeC
Q psy5021 995 PGDNIKLNVTLLSSIAIEIG------LRFAIRE 1021 (1021)
Q Consensus 995 ~g~~~~v~~~~~~pi~~~~~------~rf~lr~ 1021 (1021)
+||.|.|+|++.+|+|++.| +||+|||
T Consensus 154 ~gd~a~v~l~~~~pi~~e~~~~~~~~Grfilrd 186 (204)
T 3e1y_E 154 QDQVCIARLRTAGTICLETFKDFPQMGRFTLRD 186 (204)
T ss_dssp TTCEEEEEEEESSCCCCCCTTSSGGGTEEEEEC
T ss_pred CCCEEEEEEEECCeEEEEEcccCcCCCCEEEEE
Confidence 99999999999999999998 8999997
No 55
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.96 E-value=6.4e-30 Score=299.13 Aligned_cols=258 Identities=19% Similarity=0.224 Sum_probs=199.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+...|+++||+|||||||+++|...... .+..+|+|.+.....+.+. .+..++||||||
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~------------------~~~~~giT~~i~~~~v~~~---~g~~i~~iDTPG 61 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA------------------AMEAGGITQHIGAFLVSLP---SGEKITFLDTPG 61 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH------------------HSSSCCBCCCTTSCCBCSS---CSSCCBCEECSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc------------------cccCCceeEEEeEEEEEeC---CCCEEEEEECCC
Confidence 4567999999999999999999743211 1123466666655555542 156899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHHHHHHHHhCCceeeeee
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINF 166 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 166 (1021)
|.+|...+.++++.+|++|+|+|+++|+.+|+.++|..+...++|+++++||+|++.++......++.+. +..
T Consensus 62 he~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~-~~~------ 134 (537)
T 3izy_P 62 HAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAY-DVV------ 134 (537)
T ss_dssp SCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHT-TSC------
T ss_pred hHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhh-hhh------
Confidence 9999999999999999999999999999999999999999999999999999999765432211111110 000
Q ss_pred ecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy5021 167 NIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLV 246 (1021)
Q Consensus 167 p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~~~~~~~~~ 246 (1021)
.+
T Consensus 135 --------------------------------------------------------------------~e---------- 136 (537)
T 3izy_P 135 --------------------------------------------------------------------CE---------- 136 (537)
T ss_dssp --------------------------------------------------------------------CC----------
T ss_pred --------------------------------------------------------------------HH----------
Confidence 00
Q ss_pred hcCceeEEEeccccCcccHHHHHHHHHHhCCCCccccccCCccccccCCCceEEEEEEEeecCCCceEEEEEEEeeEEec
Q psy5021 247 LKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKV 326 (1021)
Q Consensus 247 ~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~~lP~p~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~ 326 (1021)
..+..+|++++||++|.|+++|+++|...++.+..... ++.|+.+.|++++.+++.|+++.++|.+|+|++
T Consensus 137 ~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~~~~---------~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~ 207 (537)
T 3izy_P 137 DYGGDVQAVHVSALTGENMMALAEATIALAEMLELKAD---------PTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRK 207 (537)
T ss_dssp CSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCCCCC---------SSSSEEEEEEEECCCTTCCCCEEEEEEEECCSS
T ss_pred hcCCCceEEEEECCCCCCchhHHHHHHHhhhcccccCC---------CCCCcceeEEEEEEeCCCceEEEEEEecCEEEc
Confidence 00124689999999999999999999988764422111 578999999999999999999999999999999
Q ss_pred CCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEEecCCcc-ccCCeeccCCcc
Q psy5021 327 GDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKES-STGDTLCSLSEN 384 (1021)
Q Consensus 327 gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~gdtl~~~~~~ 384 (1021)
||.+.... ...+|..++...| .++++|.||++|+|.|+++. ..||+|+.....
T Consensus 208 Gd~v~~g~--~~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 208 GSILVAGK--SWAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDLPSAGDEILEVESE 261 (537)
T ss_dssp EEEECCSS--CCEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEEEEEESSCCSCCSS
T ss_pred CCEEEeCC--ceEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCCCCCCCEEEecCCh
Confidence 99986432 3356666654433 67999999999999999985 899999986544
No 56
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.95 E-value=5.6e-28 Score=284.56 Aligned_cols=269 Identities=25% Similarity=0.335 Sum_probs=209.9
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccc------cccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYG------GEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH 724 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~ 724 (1021)
..+++++|++|+|||||+++|+.....+.. +........|....|+++|+|+......+.+.+..++|||||||
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 458899999999999999999744332211 11111234577788999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc----
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY---- 800 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~---- 800 (1021)
.+|...+..+++.+|++|+|+|++++...|+..+|..+...++| +|+|+||+|+.... .....+++.+.+...
T Consensus 93 ~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iP-iivviNK~Dl~~~~--~~~~l~ei~~~l~~~~~~~ 169 (528)
T 3tr5_A 93 ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTP-IMTFINKMDRDTRP--SIELLDEIESILRIHCAPV 169 (528)
T ss_dssp TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCC-EEEEEECTTSCCSC--HHHHHHHHHHHHCCEEEES
T ss_pred hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEeCCCCcccc--HHHHHHHHHHhhCCCceee
Confidence 99999999999999999999999999999999999999999999 88999999997521 111222332222110
Q ss_pred ----c-----------------------------------------------------------------------cCCC
Q psy5021 801 ----D-----------------------------------------------------------------------FDGE 805 (1021)
Q Consensus 801 ----~-----------------------------------------------------------------------~~~~ 805 (1021)
+ ....
T Consensus 170 ~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~ 249 (528)
T 3tr5_A 170 TWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGE 249 (528)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTS
T ss_pred ecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCc
Confidence 0 0112
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCC---------CCCCeeEEEEEEEe--eC-CceeEEEEE
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRI---------TDKPFLMPIEDVFS--IS-GRGTVVTGK 873 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~---------~~~p~~~~I~~~~~--v~-g~G~Vv~G~ 873 (1021)
.+|++++||++|. |++.|++++.+++|.|... .+.||...|.++.. .+ +.|+++.++
T Consensus 250 ~~PV~~gSA~~~~-----------GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~R 318 (528)
T 3tr5_A 250 LTPIFFGSAINNF-----------GVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLR 318 (528)
T ss_dssp EEEEEECBGGGTB-----------SHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEE
T ss_pred eeEEEeccccCCc-----------cHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEE
Confidence 3488999999884 8999999999999877532 25789998988874 55 889999999
Q ss_pred EEEEEeeCCCEEEEeecCCeeEEEEEEEEe----cccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 874 IERGIVKNGEEIEIVGYKQTIKTTITGIEM----FKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 874 V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~----~~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
|.+|++++||.|...+.++ +.+|.++.. .+.++++|.|||++++. + ..+++.||+||+..
T Consensus 319 V~sG~l~~g~~v~~~~~~~--~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~--~--l~~~~~GDtl~~~~ 382 (528)
T 3tr5_A 319 IASGQYQKGMKAYHVRLKK--EIQINNALTFMAGKRENAEEAWPGDIIGLH--N--HGTIQIGDTFTQGE 382 (528)
T ss_dssp EEESCEETTEEEEETTTTE--EEEESSCBCCBTTCSSCCSEECTTCEEEEE--E--SSSCCTTCEEESSC
T ss_pred EecCeEcCCCEEEecCCCc--eEEEeeeEEEeCCCeeECCEECCCCEEEEc--C--CCCCccCCEEcCCC
Confidence 9999999999999986553 467888776 35689999999998774 2 45688999999743
No 57
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.95 E-value=8.4e-28 Score=283.50 Aligned_cols=270 Identities=23% Similarity=0.326 Sum_probs=193.9
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccc------cccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCC
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYG------GEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPG 723 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~------~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG 723 (1021)
+..+++++|++++|||||+++|+.....+.. +.....+++|..+.|+++|+|+......+++.+..++||||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 3568899999999999999999974333211 1111234568888999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc----
Q psy5021 724 HADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE---- 799 (1021)
Q Consensus 724 ~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~---- 799 (1021)
|.+|...+..+++.+|++|+|+|++++...|+++++..+...++| +++++||+|+..... ....+++.+.+..
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~--~~~~~~i~~~l~~~~~~ 168 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP--MELLDEVENELKIGCAP 168 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH--HHHHHHHHHHHCCEEEE
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH--HHHHHHHHHHhCCCccc
Confidence 999999999999999999999999999999999999999989999 899999999975221 1222333332210
Q ss_pred ------------------------c----cc------------------------------------------------C
Q psy5021 800 ------------------------Y----DF------------------------------------------------D 803 (1021)
Q Consensus 800 ------------------------~----~~------------------------------------------------~ 803 (1021)
+ |. .
T Consensus 169 ~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 248 (529)
T 2h5e_A 169 ITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLA 248 (529)
T ss_dssp SEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHT
T ss_pred eecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHh
Confidence 0 00 1
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCC---------CCCCeeEEEEEEEe---eCCceeEEE
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRI---------TDKPFLMPIEDVFS---ISGRGTVVT 871 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~---------~~~p~~~~I~~~~~---v~g~G~Vv~ 871 (1021)
...+|+++.||+++ .|++.||++|.+++|+|... .+.||...|..+.. .++.|+++.
T Consensus 249 ~~~~Pv~~gSA~~~-----------~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~ 317 (529)
T 2h5e_A 249 GEITPVFFGTALGN-----------FGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAF 317 (529)
T ss_dssp TSEEEEEECBTTTT-----------BSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEE
T ss_pred CceeEEEeeecccC-----------CCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEE
Confidence 12347777888766 38999999999999877532 14678777766643 345899999
Q ss_pred EEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 872 GKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 872 G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
|+|.+|++++||+|.+.+.++ +.+|.+|... +.++++|.|||+|++. + ..+++.||+||+.+
T Consensus 318 ~RV~sG~l~~g~~v~~~~~~~--~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~--~--l~~~~~Gdtl~~~~ 383 (529)
T 2h5e_A 318 MRVVSGKYEKGMKLRQVRTAK--DVVISDALTFMAGDRSHVEEAYPGDILGLH--N--HGTIQIGDTFTQGE 383 (529)
T ss_dssp EEEEESCEETTCEEEETTTTE--EEECSCEECCCC-----CCEECTTCEEEEC--C--SSCCCTTCEEESSC
T ss_pred EEEecCeEcCCCEEEEeeCCC--EEEeceeeEEeCCCceEcceECCCCEEEEe--c--cCCCccCCEeecCC
Confidence 999999999999999987554 5789999875 5689999999998775 3 56788999999754
No 58
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.95 E-value=5.6e-30 Score=299.62 Aligned_cols=255 Identities=27% Similarity=0.304 Sum_probs=199.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee-CCeEEEEEecCChhhhH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES-ENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~-~~~~i~liDtpG~~~~~ 728 (1021)
|...++++|++|||||||+++|++... ......|+|.+.....+.. .+..++|||||||++|.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~----------------~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~ 66 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV----------------AAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS 66 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH----------------HHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc----------------ccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH
Confidence 456789999999999999999997431 1223457788777776666 46789999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceE
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTK 808 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 808 (1021)
.++..+++.+|++|||+|++++.++|+.+++..+...++| +|||+||+|+.+... +....++..+..........++
T Consensus 67 ~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~--~~v~~~l~~~~~~~e~~~~~~~ 143 (537)
T 3izy_P 67 AMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVLAINKCDKAEADP--EKVKKELLAYDVVCEDYGGDVQ 143 (537)
T ss_dssp TSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTSC--CSSSSHHHHTTSCCCCSSSSEE
T ss_pred HHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEecccccccch--HHHHHHHHhhhhhHHhcCCCce
Confidence 9999999999999999999999999999999999999999 999999999975211 1111222222111111122478
Q ss_pred EEEecccccccCCCCCccCcchHHHHHHhhhccC--CCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEE
Q psy5021 809 IVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI--PTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIE 886 (1021)
Q Consensus 809 ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l--~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~ 886 (1021)
++++||++|. |+++|+++|...+ +.+....+.|++++|.+++..+|.|+|++|+|.+|+|++||.+.
T Consensus 144 iv~vSAktG~-----------GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~ 212 (537)
T 3izy_P 144 AVHVSALTGE-----------NMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILV 212 (537)
T ss_dssp ECCCCSSSSC-----------SSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEEC
T ss_pred EEEEECCCCC-----------CchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEE
Confidence 9999999884 7888888887643 23444567899999999999999999999999999999999874
Q ss_pred EeecCCeeEEEEEEEEecc-cccceeccCceEEEEecccCccCcccceEEeeCCCc
Q psy5021 887 IVGYKQTIKTTITGIEMFK-KTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSI 941 (1021)
Q Consensus 887 i~p~~~~~~~~Vksi~~~~-~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~~~ 941 (1021)
.. .. .++|++|+.++ .++++|.||+.|++. +++ ....+||+++..++.
T Consensus 213 ~g--~~--~~kVr~i~~~~g~~v~~A~~G~~V~i~--g~~-~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 213 AG--KS--WAKVRLMFDENGRAVNEAYPSMPVGII--GWR-DLPSAGDEILEVESE 261 (537)
T ss_dssp CS--SC--CEEEEEEEECCCCCSCCSCCSTTCCCC--SSE-EEEEEESSCCSCCSS
T ss_pred eC--Cc--eEEEEEEEcCCCCCCcEEcCCCEEEEE--CCC-CCCCCCCEEEecCCh
Confidence 32 22 37899999986 699999999999775 443 335899999976544
No 59
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.95 E-value=1.4e-26 Score=282.61 Aligned_cols=270 Identities=25% Similarity=0.348 Sum_probs=213.9
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccc-ccc-ccccccCCchhhhhcCceEeeeEEEEeeCC-------eEEEEEe
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GEV-RAFDTIDNAPEEKERGITISTSHVEYESEN-------KHYAHVD 720 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~~-~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-------~~i~liD 720 (1021)
+...++++||.+||||||+++|+.....+.. +.. ...+++|..+.|+++|+|+......+.+.+ ..++|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 3467899999999999999999764322211 111 123467889999999999999888888776 8999999
Q ss_pred cCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 721 CPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 721 tpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
||||.+|...+..+++.+|++|+|||++++...|+.++|..+...++| +++++||+|+.... ++.+.+++++.+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip-~ilviNKiD~~~~~--~~~~~~~l~~~l~~~ 165 (704)
T 2rdo_7 89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVP-RIAFVNKMDRMGAN--FLKVVNQIKTRLGAN 165 (704)
T ss_pred CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEeCCCccccc--HHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999 88899999987521 333334444332210
Q ss_pred --------------------------cc----------------------------------------------------
Q psy5021 801 --------------------------DF---------------------------------------------------- 802 (1021)
Q Consensus 801 --------------------------~~---------------------------------------------------- 802 (1021)
-|
T Consensus 166 ~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~ 245 (704)
T 2rdo_7 166 PVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTE 245 (704)
T ss_pred ceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCH
Confidence 00
Q ss_pred ------------CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCC--------------------CC
Q psy5021 803 ------------DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRI--------------------TD 850 (1021)
Q Consensus 803 ------------~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~--------------------~~ 850 (1021)
....+|+++.||+++. |++.||+.+.+++|+|... .+
T Consensus 246 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~-----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (704)
T 2rdo_7 246 AEIKGALRQRVLNNEIILVTCGSAFKNK-----------GVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDD 314 (704)
T ss_pred HHHHHHHHHHHHhCCeeEEEEeecccCc-----------cHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCC
Confidence 0112577888888763 7899999999999887531 46
Q ss_pred CCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCc
Q psy5021 851 KPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKR 926 (1021)
Q Consensus 851 ~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~ 926 (1021)
.||.+.|.+++..++.|.++.|||.+|+|++||+|+..+.++ +.+|.+|... ..++++|.|||.|++. + .
T Consensus 315 ~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~--~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~--g--l 388 (704)
T 2rdo_7 315 EPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAA--RERFGRIVQMHANKREEIKEVRAGDIAAAI--G--L 388 (704)
T ss_pred CceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCc--EEEeceEEEEeCCCceEcceeCCCCEEEEe--C--c
Confidence 799999999999999999999999999999999999876443 4577777754 4589999999999986 4 4
Q ss_pred cCcccceEEeeCC
Q psy5021 927 EEVERGQVLAKIG 939 (1021)
Q Consensus 927 ~~i~~G~vl~~~~ 939 (1021)
++++.||+||+.+
T Consensus 389 ~~~~~GdTl~~~~ 401 (704)
T 2rdo_7 389 KDVTTGDTLCDPD 401 (704)
T ss_pred ccCccCCEEeCCC
Confidence 5679999999754
No 60
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.95 E-value=9.8e-30 Score=307.80 Aligned_cols=266 Identities=26% Similarity=0.343 Sum_probs=210.0
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccc-cc-cccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYG-GE-VRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~-~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
-.+|++||++||||||..+|+...+.+.. +. -...+++|..+.|++||+|+..+...++|+++.++|||||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 46799999999999999999865544432 11 12345789999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc----------
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE---------- 799 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~---------- 799 (1021)
++.++++.+|+||+||||.+|+..||+.+|.++...++| .|+++||||....+ +....+++.+.+..
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp-~i~~INKmDr~~a~--~~~~~~~i~~~l~~~~~~~~~~~~ 159 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP-TIFFINKIDQNGID--LSTVYQDIKEKLSAEIVIKQKVEL 159 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCS-CEECCEECCSSSCC--SHHHHHHHHHTTCCCCCCCCCCCS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-eEEEEeccccccCC--HHHHHHHHHHHhCCCccccceeEe
Confidence 999999999999999999999999999999999999999 67789999986521 11122222222110
Q ss_pred --------------------------------cc--------------cCCCceEEEEecccccccCCCCCccCcchHHH
Q psy5021 800 --------------------------------YD--------------FDGENTKIVIGSALLALEGKDDNQLGTTSIKK 833 (1021)
Q Consensus 800 --------------------------------~~--------------~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~ 833 (1021)
-. ....-.|+++.||+++. |++.
T Consensus 160 ~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~-----------Gv~~ 228 (638)
T 3j25_A 160 YPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNI-----------GIDN 228 (638)
T ss_dssp CGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCC-----------SHHH
T ss_pred eccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCC-----------Cchh
Confidence 00 00112567778888763 8999
Q ss_pred HHHhhhccCCCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccc
Q psy5021 834 LLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLD 909 (1021)
Q Consensus 834 Ll~~l~~~l~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~ 909 (1021)
||+.+.+.+|.|....+.|+...|.+++..++.|.++.+||.+|+|++||.|.+...++ .+|..+... ..+++
T Consensus 229 LLd~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~---~~v~~l~~~~g~~~~~v~ 305 (638)
T 3j25_A 229 LIEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEK---IKVTEMYTSINGELCKID 305 (638)
T ss_dssp HHHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCCC---SSBCCCCSSCCCCBSCCC
T ss_pred HhhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCcc---eeEEeeeccccccccccc
Confidence 99999999998887778899999999999999999999999999999999998764332 234444432 34789
Q ss_pred eeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 910 EGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 910 ~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
+|.|||.|++.. ..++.|+++++..
T Consensus 306 ~a~aGdIv~i~g-----~~~~~~~tl~d~~ 330 (638)
T 3j25_A 306 RAYSGEIVILQN-----EFLKLNSVLGDTK 330 (638)
T ss_dssp TTBCCCCSCCCS-----SSCSSEECSSSSS
T ss_pred ccccceEEEEec-----cccccCceecCCC
Confidence 999999986542 4567788888654
No 61
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.95 E-value=9.6e-29 Score=286.78 Aligned_cols=249 Identities=27% Similarity=0.325 Sum_probs=197.4
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
|...++++||++||||||+++|++.... ....+|+|++.....+++++..++|||||||++|..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~----------------~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~ 66 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA----------------SGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS 66 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS----------------BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc----------------cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH
Confidence 5678899999999999999999863211 122368888888777888888999999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC----CC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD----GE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~----~~ 805 (1021)
++..++..+|++|||+|+++|.++||.+++..+...++| +|+++||+|+.+... + ++...+...++. ..
T Consensus 67 ~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~--~----~v~~~l~~~~~~~~~~~~ 139 (501)
T 1zo1_I 67 MRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEADP--D----RVKNELSQYGILPEEWGG 139 (501)
T ss_dssp SBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSSTTCC--C----CTTCCCCCCCCCTTCCSS
T ss_pred HHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEeccccccCH--H----HHHHHHHHhhhhHHHhCC
Confidence 999999999999999999999999999999999999999 999999999975211 0 111112111211 12
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC--CCCCCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI--PTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGE 883 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l--~~~~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd 883 (1021)
.++++++||++|. |+++|+++|.... ..+....+.|++.+|.+++..+|.|++++|+|.+|++++||
T Consensus 140 ~~~~v~vSAktG~-----------gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd 208 (501)
T 1zo1_I 140 ESQFVHVSAKAGT-----------GIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGD 208 (501)
T ss_dssp SCEEEECCTTTCT-----------TCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTC
T ss_pred CccEEEEeeeecc-----------CcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCC
Confidence 4789999999884 7888999987532 23344557889999999999999999999999999999999
Q ss_pred EEEEeecCCeeEEEEEEEEec-ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 884 EIEIVGYKQTIKTTITGIEMF-KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 884 ~v~i~p~~~~~~~~Vksi~~~-~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
.+.+.+. .++|++|+.. +..+++|.||+.|++. +++ .....|++++...
T Consensus 209 ~v~~g~~----~~kVr~i~~~~g~~v~~a~~g~~V~i~--gl~-~~~~~Gd~~~~~~ 258 (501)
T 1zo1_I 209 IVLCGFE----YGRVRAMRNELGQEVLEAGPSIPVEIL--GLS-GVPAAGDEVTVVR 258 (501)
T ss_dssp EEEEEBS----SCEEEEECCTTTTSEEEECCSSCSSSE--EEC-SCCCTTEEEEEEC
T ss_pred EEEEccc----eeEEEEEEecCCCcCcEeccCCcEEEe--CCC-CCCCCCCEEEecC
Confidence 9988652 2589999864 5699999999998765 332 2247899998543
No 62
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.95 E-value=3.6e-27 Score=289.39 Aligned_cols=268 Identities=25% Similarity=0.340 Sum_probs=190.1
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccc-cc-cccccccCCchhhhhcCceEeeeEEEEeeC-------CeEEEEEecC
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYG-GE-VRAFDTIDNAPEEKERGITISTSHVEYESE-------NKHYAHVDCP 722 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~-~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-------~~~i~liDtp 722 (1021)
-+.|++||.+||||||..+|+.....+.. +. ....+++|..+.|++||+|+..+..++.|. ++.++|||||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 36899999999999999999865543321 11 123457899999999999999999888764 5789999999
Q ss_pred ChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc--
Q psy5021 723 GHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY-- 800 (1021)
Q Consensus 723 G~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~-- 800 (1021)
||.+|...+.++++.+|+||+||||.+|+..||+..|.++...++| .|+++||||....+ +....+++...+...
T Consensus 94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp-~i~~iNKiDr~~a~--~~~~~~ei~~~l~~~~~ 170 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVP-RIVYVNKMDRQGAN--FLRVVEQIKKRLGHTPV 170 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCC-EEEEEECSSSTTCC--HHHHHHHHHHHHCSCEE
T ss_pred CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEccccccCcc--HHHHHHHhhhhccccee
Confidence 9999999999999999999999999999999999999999999999 78899999986421 222223333222110
Q ss_pred --------------------------------------------------------------------------------
Q psy5021 801 -------------------------------------------------------------------------------- 800 (1021)
Q Consensus 801 -------------------------------------------------------------------------------- 800 (1021)
T Consensus 171 ~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~~~ 250 (709)
T 4fn5_A 171 PVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEAE 250 (709)
T ss_dssp ESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCHHH
T ss_pred eeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccHHH
Confidence
Q ss_pred --------ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC--------------------CCCCC
Q psy5021 801 --------DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR--------------------ITDKP 852 (1021)
Q Consensus 801 --------~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~--------------------~~~~p 852 (1021)
-...+-.|.+..||+++ .+++.||+.+.+++|.|.. ..+.|
T Consensus 251 ~~~~l~~~~~~~~~~pv~~gsa~~~-----------~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~p 319 (709)
T 4fn5_A 251 IKEGLRLRTLACEIVPAVCGSSFKN-----------KGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEP 319 (709)
T ss_dssp HHHHHHHHHHTTSCEEEEECBTTTT-----------BTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSC
T ss_pred HHHHHHHhhhhceeeeeeeeecccC-----------CchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCc
Confidence 00112245666677765 3788999999999998742 34679
Q ss_pred eeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccC
Q psy5021 853 FLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREE 928 (1021)
Q Consensus 853 ~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~ 928 (1021)
+.+.|..+...+..|.+..|||.+|+|++||+|.....++. .+|..+... ..++++|.||+.|++. ++ .+
T Consensus 320 l~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~--~~v~~l~~~~g~~~~~v~~~~aGdIv~i~--Gl--~~ 393 (709)
T 4fn5_A 320 FSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKK--ERVGRMVQMHANQREEIKEVRAGDIAALI--GM--KD 393 (709)
T ss_dssp CEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCC--CBCCCEECCCSSCCCEESEECTTCEEEEC--SC--SS
T ss_pred ceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCcE--EeecceeEeecceeeEeeeecCCCeeeec--CC--Cc
Confidence 99999999999999999999999999999999986533332 344444433 3589999999998764 43 56
Q ss_pred cccceEEeeCC
Q psy5021 929 VERGQVLAKIG 939 (1021)
Q Consensus 929 i~~G~vl~~~~ 939 (1021)
+..|++||+.+
T Consensus 394 ~~~gdTl~~~~ 404 (709)
T 4fn5_A 394 VTTGDTLCSIE 404 (709)
T ss_dssp CCTTCEEECSS
T ss_pred CccCCEecCCC
Confidence 89999999755
No 63
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.94 E-value=5.3e-27 Score=279.39 Aligned_cols=260 Identities=28% Similarity=0.335 Sum_probs=192.7
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee----------------
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES---------------- 711 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~---------------- 711 (1021)
.+|...++++||+|||||||+++|++.... +. ..+|+|.+.....+.+
T Consensus 2 ~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~------------~~----e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v 65 (594)
T 1g7s_A 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVA------------SR----EAGGITQHIGATEIPMDVIEGICGDFLKKFSI 65 (594)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHS------------CC--------CCCBTTEEEEEHHHHHHHSCGGGGGCGG
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhcccCc------------cc----cCCceecccCeEEEeechhhhhcccccccccc
Confidence 357788999999999999999999864311 00 0123443333222221
Q ss_pred --CCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccch-h-----
Q psy5021 712 --ENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQD-K----- 783 (1021)
Q Consensus 712 --~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~-~----- 783 (1021)
....++|||||||++|...+..+++.+|++|+|+|+++|...||.++|.++...++| +|+++||+|+.+. .
T Consensus 66 ~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vP-iIVViNKiDl~~~~~~~~~~ 144 (594)
T 1g7s_A 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKIDRIHGWRVHEGR 144 (594)
T ss_dssp GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSTTCCCCTTC
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCe-EEEEecccccccccccccCC
Confidence 123599999999999998888888999999999999999999999999999999999 9999999999641 0
Q ss_pred --------------hHHHHHHHHHHHhhhccccC----------CCceEEEEecccccccCCCCCccCcchHHHHHHhhh
Q psy5021 784 --------------ELLDLVEMEIRELLTEYDFD----------GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLD 839 (1021)
Q Consensus 784 --------------~~~~~~~~~~~~~l~~~~~~----------~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~ 839 (1021)
+.+.+...++...+...++. ...++++++||++|. |+++|+++|.
T Consensus 145 ~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~-----------GI~eLl~~I~ 213 (594)
T 1g7s_A 145 PFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE-----------GIPELLTMLM 213 (594)
T ss_dssp CHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT-----------THHHHHHHHH
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCC-----------CchhHHHHHH
Confidence 11122222333333333332 235689999999884 8999999987
Q ss_pred ccCCCC-----CCCCCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----------
Q psy5021 840 SSIPTP-----NRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF---------- 904 (1021)
Q Consensus 840 ~~l~~~-----~~~~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~---------- 904 (1021)
..++.+ ....+.|+++.|.+++..+|.|++++|+|.+|+|++||.+.+.|.+....++|++|...
T Consensus 214 ~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~ 293 (594)
T 1g7s_A 214 GLAQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESR 293 (594)
T ss_dssp HHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CC
T ss_pred hhccccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhcc
Confidence 654322 12357899999999999999999999999999999999999998776667899999864
Q ss_pred --ccccceec--cCceEEEEecccCccCcccceEEeeCC
Q psy5021 905 --KKTLDEGL--AGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 905 --~~~~~~a~--~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
..++++|. +|+.+. +. +..++..||.++...
T Consensus 294 ~~~~~v~ea~~~aG~~v~--~~--~l~~~~~Gd~l~~~~ 328 (594)
T 1g7s_A 294 KKFQKVDEVVAAAGIKIV--AP--GIDDVMAGSPLRVVT 328 (594)
T ss_dssp CSEEECSEEESSEEEEEE--CS--SCTTBCTTCEEEECS
T ss_pred CCceEccEEcCCCCcEEE--Ec--ccCCCCCCCEEEecC
Confidence 23677777 565543 23 355678999998654
No 64
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.94 E-value=2.9e-26 Score=278.77 Aligned_cols=266 Identities=23% Similarity=0.266 Sum_probs=213.4
Q ss_pred cceeeeeeeeeccchhhhhhhcccccccc-ccc-cccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIY-GGE-VRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~-~~~-~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
....+++|++++|||||+++|++....+. .+. ......+|....|+++|+|+......+.+.+..++|||||||.+|.
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~ 88 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV 88 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchH
Confidence 35789999999999999999985433211 111 1223456888899999999999988898889999999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc---------
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE--------- 799 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~--------- 799 (1021)
..+..+++.+|++++|+|+++|...|+++++..+...++| +|+++||+|+. . ..+...+++.+.+..
T Consensus 89 ~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip-~ilv~NKiD~~-~--~~~~~~~~l~~~l~~~~~~~~Pi~ 164 (665)
T 2dy1_A 89 GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLP-RMVVVTKLDKG-G--DYYALLEDLRSTLGPILPIDLPLY 164 (665)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECGGGC-C--CHHHHHHHHHHHHCSEEECEEEEE
T ss_pred HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCC-EEEEecCCchh-h--hHHHHHHHHHHHhCCcceEEeeec
Confidence 9999999999999999999999999999999999999999 78899999986 2 123333344333220
Q ss_pred --------------------------------------------------------------cc--------------cC
Q psy5021 800 --------------------------------------------------------------YD--------------FD 803 (1021)
Q Consensus 800 --------------------------------------------------------------~~--------------~~ 803 (1021)
.. ..
T Consensus 165 ~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~ 244 (665)
T 2dy1_A 165 EGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRR 244 (665)
T ss_dssp ETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred CCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Confidence 00 00
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCCC-CCCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRI-TDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNG 882 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~~-~~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~g 882 (1021)
...+|++++||++|. |++.|+++|.+.+|.|... .+.|+.+.|.+++..++.|+++.|+|.+|+|++|
T Consensus 245 ~~~~pv~~~SA~~~~-----------Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g 313 (665)
T 2dy1_A 245 GLLYPVALASGEREI-----------GVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPG 313 (665)
T ss_dssp TSCEEEEECBTTTTB-----------SHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTT
T ss_pred CCeeEEEEeecccCc-----------CHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecC
Confidence 112689999999873 8999999999989877643 6789999999999999999999999999999999
Q ss_pred CEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeCC
Q psy5021 883 EEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKIG 939 (1021)
Q Consensus 883 d~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~~ 939 (1021)
|+|.+.+ .+.+|.+|... ..++++|.|||.|++. + .+++++||+||+.+
T Consensus 314 ~~v~~~~----~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~--g--l~~~~~Gdtl~~~~ 366 (665)
T 2dy1_A 314 DSLQSEA----GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVP--K--AEGLHRGMVLWQGE 366 (665)
T ss_dssp EEEBCTT----SCEEESSEEEEETTEEEEESCEETTCEEEES--S--CTTCCTTCEEESSS
T ss_pred CEEEcCC----CeEEEeEEEEEeCCCeeECCEECCCCEEEEe--C--CccCccCCEEecCC
Confidence 9998765 23577777753 3589999999999885 3 45688999999754
No 65
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.94 E-value=1.4e-25 Score=273.49 Aligned_cols=270 Identities=25% Similarity=0.319 Sum_probs=198.7
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccc-cc-cccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GE-VRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~-~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~ 727 (1021)
+...++++|++++|||||+++|+........ +. ....+++|....|+++|+|+......+.+.+..++|||||||.+|
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 4568899999999999999999854322211 11 012345788899999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc------
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD------ 801 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~------ 801 (1021)
...+..+++.+|++|+|+|++++...|+.++|..+...++| +++++||+|+.... .+...+++.+.+....
T Consensus 91 ~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~--~~~~~~~l~~~l~~~~~~~~~P 167 (691)
T 1dar_A 91 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-RIAFANKMDKTGAD--LWLVIRTMQERLGARPVVMQLP 167 (691)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--HHHHHHHHHHTTCCCEEECEEE
T ss_pred HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCcccCC--HHHHHHHHHHHhCCCccceecc
Confidence 99999999999999999999999999999999999999999 88899999987522 3334444444432100
Q ss_pred --------------------cC----------------------------------------------------------
Q psy5021 802 --------------------FD---------------------------------------------------------- 803 (1021)
Q Consensus 802 --------------------~~---------------------------------------------------------- 803 (1021)
|.
T Consensus 168 i~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~ 247 (691)
T 1dar_A 168 IGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIR 247 (691)
T ss_dssp ESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred ccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHH
Confidence 00
Q ss_pred -----CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC------------------CCCCCeeEEEEEE
Q psy5021 804 -----GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR------------------ITDKPFLMPIEDV 860 (1021)
Q Consensus 804 -----~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~------------------~~~~p~~~~I~~~ 860 (1021)
...+|+++.||+++. |++.||+.+.+++|+|.. ..+.|+.+.|.++
T Consensus 248 ~~~~~~~~~Pv~~gSA~~~~-----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~ 316 (691)
T 1dar_A 248 KGTIDLKITPVFLGSALKNK-----------GVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKI 316 (691)
T ss_dssp HHHHTTSCEEEEECBGGGTB-----------SHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEE
T ss_pred HHHHhCcEeEEEEeecccCc-----------CHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEE
Confidence 012578888888763 899999999999998864 2467999999999
Q ss_pred EeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEe
Q psy5021 861 FSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLA 936 (1021)
Q Consensus 861 ~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~ 936 (1021)
+..++.|.++.|+|.+|+|++||+|.....+ .+.+|..+... ..++++|.|||.+++. + .++++.||+||
T Consensus 317 ~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g--l~~~~~Gdtl~ 390 (691)
T 1dar_A 317 MADPYVGRLTFIRVYSGTLTSGSYVYNTTKG--RKERVARLLRMHANHREEVEELKAGDLGAVV--G--LKETITGDTLV 390 (691)
T ss_dssp EEETTTEEEEEEEEEESEEESSCEEEETTTT--EEEECCEEEEECSSCEEEESEEETTCEEEEE--C--CSSCCTTCEEE
T ss_pred EEcCCCCcEEEEEEeeeeEecCCEEEecCCC--cEEEEceEEEEeCCCceEcceecCCCEEEEe--C--cccCccCCEEe
Confidence 9999999999999999999999999976433 34566666654 3589999999999987 4 45678899999
Q ss_pred eCC
Q psy5021 937 KIG 939 (1021)
Q Consensus 937 ~~~ 939 (1021)
+.+
T Consensus 391 ~~~ 393 (691)
T 1dar_A 391 GED 393 (691)
T ss_dssp ETT
T ss_pred cCC
Confidence 754
No 66
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.93 E-value=2.9e-25 Score=270.83 Aligned_cols=270 Identities=22% Similarity=0.327 Sum_probs=198.9
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccc-cc-cccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GE-VRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~-~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~ 727 (1021)
+...++++|++|+|||||+++|+.....+.. +. ....+++|....|+++|+|+......+.+.+..++|||||||.+|
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 3467899999999999999999964322211 00 012245688889999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc-------
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY------- 800 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~------- 800 (1021)
...+..+++.+|++|+|+|++++...++..+|..+...++| +|+++||+|+...+ .....+++++.+...
T Consensus 89 ~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~~--~~~~~~~l~~~l~~~~~~~~ip 165 (693)
T 2xex_A 89 TVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVP-RIVFVNKMDKLGAN--FEYSVSTLHDRLQANAAPIQLP 165 (693)
T ss_dssp CHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--HHHHHHHHHHHHCCCEEESEEE
T ss_pred HHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCC-EEEEEECCCccccc--hHHHHHHHHHHhCCCceeEEee
Confidence 99999999999999999999999999999999999999999 88899999997522 233334444433210
Q ss_pred -------------------ccC----------------------------------------------------------
Q psy5021 801 -------------------DFD---------------------------------------------------------- 803 (1021)
Q Consensus 801 -------------------~~~---------------------------------------------------------- 803 (1021)
-|.
T Consensus 166 isa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~ 245 (693)
T 2xex_A 166 IGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIR 245 (693)
T ss_dssp ECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred cccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHH
Confidence 000
Q ss_pred -----CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCCCC--------------------CCCCCeeEEEE
Q psy5021 804 -----GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNR--------------------ITDKPFLMPIE 858 (1021)
Q Consensus 804 -----~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~~~--------------------~~~~p~~~~I~ 858 (1021)
..-+|+++.||+++ .|++.|++.+.+++|+|.. ..+.||.+.|.
T Consensus 246 ~~~~~~~~~Pv~~gSA~~~-----------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~Vf 314 (693)
T 2xex_A 246 QATTNVEFYPVLCGTAFKN-----------KGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAF 314 (693)
T ss_dssp HHHHTTSCEEEEECBTTTT-----------BSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEE
T ss_pred HHHHhCCeeeEEEeecccC-----------cCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEE
Confidence 01146777788766 3789999999999998754 14679999999
Q ss_pred EEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecc----cccceeccCceEEEEecccCccCcccceE
Q psy5021 859 DVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK----KTLDEGLAGENVGILLRSVKREEVERGQV 934 (1021)
Q Consensus 859 ~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~----~~~~~a~~G~~v~l~l~~~~~~~i~~G~v 934 (1021)
+++..++.|.++.|||.+|+|++||+|..... ..+.+|..|...+ .++++|.|||.+++. + .++++.||+
T Consensus 315 K~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~--~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g--l~~~~~GdT 388 (693)
T 2xex_A 315 KVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTK--GKRERVGRLLQMHANSRQEIDTVYSGDIAAAV--G--LKDTGTGDT 388 (693)
T ss_dssp EEEEETTTEEEEEEEEEESEEETTEEEEETTT--TEEEEECCEEEECSSCEEECSEEETTCEEEEE--S--CSSCCTTCE
T ss_pred EeeecCCCceEEEEEEEeeeEecCCEEEecCC--CceEEeceEEEEeCCCceEccccCcCCEEEEe--C--cccCccCCE
Confidence 99999999999999999999999999997632 3446777776543 589999999999987 4 456788999
Q ss_pred EeeCC
Q psy5021 935 LAKIG 939 (1021)
Q Consensus 935 l~~~~ 939 (1021)
||+.+
T Consensus 389 l~~~~ 393 (693)
T 2xex_A 389 LCGEK 393 (693)
T ss_dssp EEETT
T ss_pred EecCC
Confidence 99754
No 67
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.90 E-value=6.4e-23 Score=255.12 Aligned_cols=284 Identities=23% Similarity=0.368 Sum_probs=192.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC----------------Ce
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE----------------NK 714 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~----------------~~ 714 (1021)
...++++||++||||||+++|+.....+........+++|....|+++|+|+......+.+. +.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 45789999999999999999997654443322223356788899999999998877666554 57
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc------hh---hH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ------DK---EL 785 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~------~~---~~ 785 (1021)
.++|||||||.+|...+..+++.+|++|+|+|+++|...|+..+|..+...++| +|+++||+|+.. .+ ..
T Consensus 99 ~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~ilviNK~D~~~~e~~~~~~e~~~~ 177 (842)
T 1n0u_A 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIK-PVVVINKVDRALLELQVSKEDLYQT 177 (842)
T ss_dssp EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCE-EEEEEECHHHHHHTSCCCHHHHHHH
T ss_pred eEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-eEEEEECCCcchhhhccCHHHHHHH
Confidence 899999999999999999999999999999999999999999999988888999 788999999863 11 12
Q ss_pred HHHHHHHHHHhhhcc-----c---cCCCceEEEEecccccccC------------------------CC-----C-----
Q psy5021 786 LDLVEMEIRELLTEY-----D---FDGENTKIVIGSALLALEG------------------------KD-----D----- 823 (1021)
Q Consensus 786 ~~~~~~~~~~~l~~~-----~---~~~~~~~ii~iSa~~~~~~------------------------~~-----~----- 823 (1021)
++...+++...+..+ + +.+...++...|+++|+.. ++ .
T Consensus 178 ~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~~~~ 257 (842)
T 1n0u_A 178 FARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKW 257 (842)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTTTEE
T ss_pred HHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCCCeE
Confidence 334444444444321 1 3322234666788654210 00 0
Q ss_pred -----Cc--------------------------------------cC--c--------------------ch-HHHHHHh
Q psy5021 824 -----NQ--------------------------------------LG--T--------------------TS-IKKLLDV 837 (1021)
Q Consensus 824 -----~~--------------------------------------~~--~--------------------~~-i~~Ll~~ 837 (1021)
.. .+ . .. +..||+.
T Consensus 258 ~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~LLd~ 337 (842)
T 1n0u_A 258 TNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEM 337 (842)
T ss_dssp ESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHHHHH
T ss_pred EEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHHHHH
Confidence 00 00 0 00 2678888
Q ss_pred hhccCCCCCC-------------------------CCCCCeeEEEEEEEeeCCcee-EEEEEEEEEEeeCCCEEEEeecC
Q psy5021 838 LDSSIPTPNR-------------------------ITDKPFLMPIEDVFSISGRGT-VVTGKIERGIVKNGEEIEIVGYK 891 (1021)
Q Consensus 838 l~~~l~~~~~-------------------------~~~~p~~~~I~~~~~v~g~G~-Vv~G~V~~G~l~~gd~v~i~p~~ 891 (1021)
+.+++|+|.. ..+.|+.+.|..++..+..|. +..+||.+|+|++||.|.+...+
T Consensus 338 i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~~~ 417 (842)
T 1n0u_A 338 IVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPN 417 (842)
T ss_dssp HHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTT
T ss_pred HHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEecccc
Confidence 8888887741 346799999999999999995 99999999999999999875321
Q ss_pred ----Ce---eEEEEEEEEec----ccccceeccCceEEEEecccCccCcccceEEeeC
Q psy5021 892 ----QT---IKTTITGIEMF----KKTLDEGLAGENVGILLRSVKREEVERGQVLAKI 938 (1021)
Q Consensus 892 ----~~---~~~~Vksi~~~----~~~~~~a~~G~~v~l~l~~~~~~~i~~G~vl~~~ 938 (1021)
+. .+.+|..|... ..++++|.|||.|++. +++...+..| +||+.
T Consensus 418 ~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~--gl~~~~~~t~-Tl~~~ 472 (842)
T 1n0u_A 418 YVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLV--GIDQFLLKTG-TLTTS 472 (842)
T ss_dssp CCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEE--SCTTTCCSSE-EEESC
T ss_pred ccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEE--ccccceecce-eecCC
Confidence 11 14677777765 3489999999998775 4333323445 88764
No 68
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.77 E-value=3.2e-18 Score=188.11 Aligned_cols=117 Identities=21% Similarity=0.206 Sum_probs=91.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
-+.++|+|+|++|+|||||+|+|+.....+... ..+.|.......+.+. +.+++|||||
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~-----------------~~~tTr~~i~~i~~~~----~~~l~l~DTp 63 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISP-----------------RPQTTRKRLRGILTEG----RRQIVFVDTP 63 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-----------------SSCCCCSCEEEEEEET----TEEEEEEECC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecC-----------------CCCceeEEEEEEEEeC----CcEEEEecCc
Confidence 456789999999999999999998654432210 0112222222223444 7899999999
Q ss_pred CCCC--------cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhc--CCCEEEEEeCcCCCC
Q psy5021 86 GHVD--------FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY--KVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~--------f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~--~~p~iiviNK~D~~~ 143 (1021)
|+.+ |...+..+++.+|++|+|+|++++....+..+++.+... ++|+++|+||+|+..
T Consensus 64 G~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 64 GLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 131 (301)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred cccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCC
Confidence 9987 677888999999999999999999888888888888877 899999999999864
No 69
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.74 E-value=1.4e-17 Score=184.04 Aligned_cols=118 Identities=22% Similarity=0.239 Sum_probs=90.3
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
...--.|+|+|++|+|||||+++|+.....+.. ...+.|.......+.+. .+++++||||
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s-----------------~~~~tT~~~~~~~~~~~---~~~~i~lvDT 66 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIIS-----------------PKAGTTRMRVLGVKNIP---NEAQIIFLDT 66 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-----------------SSSCCCCSCEEEEEEET---TTEEEEEEEC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccC-----------------CCCCceeeEEEEEEecC---CCCeEEEEEC
Confidence 344567999999999999999999854433211 11233433332222222 1688999999
Q ss_pred CCCCCcH----------HHHHHHhhccCeEEEEEeCCCCCchhHHHH-HHHHhhcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFT----------IEVERSLRVLDGAVIIICASSGIQPQTETV-WFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~----------~~~~~~l~~~D~~ilvvda~~g~~~~t~~~-~~~~~~~~~p~iiviNK~D~~ 142 (1021)
||+.++. ..+..+++.+|++|+|+|++++...++..+ ++.+...++|+++|+||+|+.
T Consensus 67 PG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 67 PGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp CCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred cCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 9997765 677889999999999999999999999998 677788899999999999986
No 70
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.74 E-value=9.3e-19 Score=199.93 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=91.5
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+..+.+||+|+|+.|+|||||+++|+.... ...+..+|+|++.....+.+.. ...++|||
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~-----------------~~~~~~~gtT~d~~~~~~~~~~---~~~l~liD 89 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNV-----------------SIVSDYAGTTTDPVYKSMELHP---IGPVTLVD 89 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC------------------------------CCCCEEEEEETT---TEEEEEEE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCC-----------------CccCCCCCeeeeeEEEEEEECC---CCeEEEEE
Confidence 566789999999999999999999853221 1223566888888887787772 23899999
Q ss_pred CCCCCCcHH-------HHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCC
Q psy5021 84 TPGHVDFTI-------EVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGAN 145 (1021)
Q Consensus 84 tPG~~~f~~-------~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~ 145 (1021)
||||.+|.. .+..+++.+|++|+|+|+ +...++..+++.+...++|+++|+||+|+...+
T Consensus 90 TpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 90 TPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp CSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCC
T ss_pred CcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCcc
Confidence 999998853 367788999999999999 788999999999999999999999999997654
No 71
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.73 E-value=5.6e-18 Score=186.56 Aligned_cols=116 Identities=21% Similarity=0.215 Sum_probs=87.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
-+..+|+|+||+|+|||||+++|+.....+.. + ..+.|.......+.+. +++++++|||
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s-----------~------~~~tTr~~~~gi~~~~----~~~i~~iDTp 64 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITS-----------R------KAQTTRHRIVGIHTEG----AYQAIYVDTP 64 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECC-----------C------CSSCCSSCEEEEEEET----TEEEEEESSS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccC-----------C------CCCcceeeEEEEEEEC----CeeEEEEECc
Confidence 34578999999999999999999854322111 0 0122322222234455 7899999999
Q ss_pred CCC---------CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 86 GHV---------DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~---------~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|+. +|...+..+++.+|++++|+|+++ +..+++.+++.+...+.|+++++||+|+..
T Consensus 65 G~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 65 GLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp SCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred CCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 998 333445667889999999999988 999999999888888999999999999864
No 72
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.73 E-value=1.6e-17 Score=168.27 Aligned_cols=120 Identities=30% Similarity=0.407 Sum_probs=95.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
++..+|+++|..|+|||||+++|+...-... ...++|.......+.+. +..+++||||
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~----~~~~~l~Dt~ 63 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQ------------------EAGGITQHIGAYQVTVN----DKKITFLDTP 63 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCS------------------SCCSSSTTCCCCEEEET----TEEEEESCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccC------------------CCCceeEeeeEEEEEeC----CceEEEEECC
Confidence 4678999999999999999999974221110 11233333333445566 7789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHH
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYN 147 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~ 147 (1021)
|+.+|...+.++++.+|++|+|+|++++...++.+.+..+...++|+++|+||+|+...+.+
T Consensus 64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~ 125 (178)
T 2lkc_A 64 GHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPD 125 (178)
T ss_dssp SSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHH
T ss_pred CCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHH
Confidence 99999888888899999999999999998888888888888889999999999999765443
No 73
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.72 E-value=3.4e-17 Score=162.75 Aligned_cols=114 Identities=15% Similarity=0.173 Sum_probs=86.2
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+++|+++|+.|+|||||+++|....... .+...+.|.......+.+. +..+.+|||||+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~----~~~~~l~Dt~G~ 59 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAV-----------------VADVPGVTRDLKEGVVETD----RGRFLLVDTGGL 59 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC----------------------------CCEEEEEEET----TEEEEEEECGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeee-----------------ccCCCCceecceEEEEEeC----CceEEEEECCCC
Confidence 4799999999999999999997533211 1122344555444555555 678999999999
Q ss_pred CC-------cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 88 VD-------FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~-------f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
.+ +...+..+++.+|++++|+|++++.......+++.+...++|+++|+||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 60 WSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDP 121 (161)
T ss_dssp CSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSG
T ss_pred CCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccc
Confidence 87 45667778899999999999999888777777777777899999999999985
No 74
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.72 E-value=3.4e-17 Score=172.58 Aligned_cols=121 Identities=15% Similarity=0.083 Sum_probs=86.3
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+..+..+|+++|+.|+|||||+++|+..... ... ....|.|.......+.+ ..+..++|||
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~-~~~---------------~~~~~~t~~~~~~~~~~---~~~~~~~l~D 85 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRL-AFA---------------SKTPGRTQHINYFSVGP---AAEPVAHLVD 85 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSS-SCT---------------TCCCCSCCCEEEEEESC---TTSCSEEEEE
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcc-eee---------------cCCCCcccceEEEEecC---CCCCcEEEEc
Confidence 4456789999999999999999999643210 000 01123444433333321 2267899999
Q ss_pred CCCCCCc----------HHHHHHHhhc---cCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 84 TPGHVDF----------TIEVERSLRV---LDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 84 tPG~~~f----------~~~~~~~l~~---~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|||+.+- ...+..+++. +|++|+|+|++++.......+++.+...++|+++|+||+|+..
T Consensus 86 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 86 LPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT 158 (223)
T ss_dssp CCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC
T ss_pred CCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 9997442 3344444544 8889999999999888888888999889999999999999864
No 75
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.70 E-value=3.4e-18 Score=184.98 Aligned_cols=202 Identities=14% Similarity=0.074 Sum_probs=127.9
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+|+|++|+|||||+++|+......... ...++|.......+.|. ++.++|||||
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~----------------~~~~~t~~~~~~~~~~~----~~~i~iiDTp 79 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKL----------------GSQTLTKTCSKSQGSWG----NREIVIIDTP 79 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT----------------TSCCCCCSCEEEEEEET----TEEEEEEECC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCC----------------CCCceeeeeEEEEEEeC----CCEEEEEECc
Confidence 356899999999999999999998654332211 01124555555667777 8899999999
Q ss_pred CCCCcH-----------HHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhc-----CCCEEEEEe-CcCCCCCCHHH
Q psy5021 86 GHVDFT-----------IEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY-----KVPKMIFVN-KMDRIGANYNN 148 (1021)
Q Consensus 86 G~~~f~-----------~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~-----~~p~iiviN-K~D~~~~~~~~ 148 (1021)
|+.+|. ..+..+++.+|++|+|+|++. +..+...+|+++... +.|.++++| |+|+...++..
T Consensus 80 G~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~ 158 (260)
T 2xtp_A 80 DMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMD 158 (260)
T ss_dssp GGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHH
Confidence 998873 223347788999999999985 778888888877665 678888888 99998766544
Q ss_pred HH--------HHHHHHhCCceeeee-eec------ccCCceeeEEeccccee-eeecCCCeeeccCCh--hhHHHHHHHH
Q psy5021 149 CI--------IDIKKKFNCIVLPIN-FNI------GIEENYEGIVDIINKKS-FFWKENSIIIKNIDK--DQLSAFDYYN 210 (1021)
Q Consensus 149 ~~--------~~i~~~l~~~~~~~~-~p~------~~~~~~~g~id~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~ 210 (1021)
.+ .++.+.++....++. +|+ +-..-|.++.+++.+.. ++|..+.+ .+.|. .......+.+
T Consensus 159 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 236 (260)
T 2xtp_A 159 YMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLY--SLIQRSKCGPVGSDERV 236 (260)
T ss_dssp HHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHH--HHC-------------C
T ss_pred HHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHH--HHHHHHHhhhhhHHHHH
Confidence 22 224444443321111 222 22234555566665554 56643322 23333 3344556677
Q ss_pred HHHHHHhcCCCHHHHHHHHc
Q psy5021 211 ELMLETLSNNDEFFLEKYIN 230 (1021)
Q Consensus 211 ~~l~e~~~~~d~~l~e~~l~ 230 (1021)
..+.|.+++.+++++++|.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~ 256 (260)
T 2xtp_A 237 KEFKQSLIKYMETQRSYTAL 256 (260)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999864
No 76
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.70 E-value=1.3e-16 Score=160.12 Aligned_cols=115 Identities=17% Similarity=0.061 Sum_probs=84.6
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..+..+|+++|+.|+|||||+++|....-. . + ..|+......+.+. ...+.+|||
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~------------~-------~~t~~~~~~~~~~~----~~~~~~~Dt 58 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVV--T------------T-------IPTIGFNVETVTYK----NLKFQVWDL 58 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCC--C------------C-------CCCSSEEEEEEEET----TEEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC--C------------c-------CCcCccceEEEEEC----CEEEEEEEC
Confidence 355689999999999999999999642210 0 0 11333333455666 789999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHH-hh---cCCCEEEEEeCcCCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQS-QK---YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~-~~---~~~p~iiviNK~D~~~~ 144 (1021)
||+.+|...+..+++.+|++|+|+|+++...... ...+... .. .++|+++|+||+|+...
T Consensus 59 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 59 GGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp CCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 9999999888899999999999999998743322 2233333 22 58999999999999654
No 77
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.70 E-value=3.5e-16 Score=155.91 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=80.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|+++|+.|+|||||+++|+...-. ++ ..|+......+.+. ++.+++|||||+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~--------------~~-------~~t~~~~~~~~~~~----~~~~~i~Dt~G~~~ 56 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV--------------TT-------IPTIGFNVETVEYK----NISFTVWDVGGQDK 56 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS--------------CC-------CCCSSCCEEEEECS----SCEEEEEECCCCGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC--------------cc-------cCcCceeEEEEEEC----CEEEEEEEcCCChh
Confidence 6999999999999999999753311 00 01222223344455 78999999999999
Q ss_pred cHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHhh----cCCCEEEEEeCcCCCCC
Q psy5021 90 FTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQK----YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 90 f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~~----~~~p~iiviNK~D~~~~ 144 (1021)
|...+..+++.+|++++|+|+++...... ...+..... .++|+++|+||+|+...
T Consensus 57 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp GHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 99999999999999999999987643322 223333322 37999999999999653
No 78
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.70 E-value=2.8e-17 Score=190.98 Aligned_cols=118 Identities=16% Similarity=0.172 Sum_probs=89.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+...+|+++|++|+|||||+++|+....... +...|+|.+.....+.+. +..++|||||
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~-----------------~~~~gtT~d~~~~~~~~~----~~~~~l~DT~ 231 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIV-----------------SNVAGTTRDAVDTSFTYN----QQEFVIVDTA 231 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEE-----------------C---------CCEEEEET----TEEEEETTHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceee-----------------cCCCCceeeeeEEEEEEC----CeEEEEEECC
Confidence 3568999999999999999999974322111 124577877777777777 7789999999
Q ss_pred CCCCc----------HHH-HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 86 GHVDF----------TIE-VERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f----------~~~-~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
|+.++ ... ...+++.+|++|+|+|++++...|+..++..+...++|+++|+||+|+...
T Consensus 232 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 232 GMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 301 (436)
T ss_dssp HHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred CcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCc
Confidence 99443 322 346889999999999999999999999888888899999999999998643
No 79
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=2.1e-16 Score=161.53 Aligned_cols=113 Identities=16% Similarity=0.092 Sum_probs=79.5
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+..... . + ..|+......+.+. ++.+.+||||
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~------------~-------~~t~~~~~~~~~~~----~~~~~i~Dt~ 68 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV--H------------T-------SPTIGSNVEEIVIN----NTRFLMWDIG 68 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE--E------------E-------ECCSCSSCEEEEET----TEEEEEEECC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC--c------------C-------cCCCccceEEEEEC----CEEEEEEECC
Confidence 34678999999999999999999732211 0 0 01222233345555 7899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHhh----cCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQK----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~~----~~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++|+|+|++++..... ...+..+.. .++|+++|+||+|+..
T Consensus 69 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 69 GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp C----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred CCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 999999999999999999999999998743332 233333332 5899999999999964
No 80
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.69 E-value=3.4e-16 Score=160.23 Aligned_cols=115 Identities=19% Similarity=0.094 Sum_probs=83.6
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-... ...|+......+.+. ++.+++||||
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------------~~~t~~~~~~~~~~~----~~~~~l~Dt~ 75 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNED--------------------MIPTVGFNMRKITKG----NVTIKLWDIG 75 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--------------------CCCCCSEEEEEEEET----TEEEEEEEEC
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCc--------------------cCCCCceeEEEEEeC----CEEEEEEECC
Confidence 3457899999999999999999975321100 011333333344555 8899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHh----hcCCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQ----KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~----~~~~p~iiviNK~D~~~~ 144 (1021)
|+.+|...+..+++.+|++|+|+|+++....+. ...+..+. ..++|+++|+||+|+...
T Consensus 76 G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 76 GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp CSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred CCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 999999999999999999999999987543332 22333332 268999999999999654
No 81
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.69 E-value=2e-16 Score=174.86 Aligned_cols=163 Identities=20% Similarity=0.243 Sum_probs=121.2
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-CeEEEEEecCChh-
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-NKHYAHVDCPGHA- 725 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-~~~i~liDtpG~~- 725 (1021)
.-.+..++++|.+|+|||||+|+|++....+. ....+.|.+.....+..+ +..+.||||||+.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~---------------s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~ 71 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII---------------SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC---------------CSSSCCCCSCEEEEEEETTTEEEEEEECCCCCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCcccc---------------CCCCCceeeEEEEEEecCCCCeEEEEECcCCCc
Confidence 34566789999999999999999998543221 123355666666666777 8899999999984
Q ss_pred ---------hhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHH-HHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHH
Q psy5021 726 ---------DYIKNMITGAAQMDGAILVCSAVDGPMPQTREH-ILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRE 795 (1021)
Q Consensus 726 ---------~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~-l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~ 795 (1021)
.+...+..++..+|++++|+|++++...++... +..+...++| +|+|+||+|+...........+++.+
T Consensus 72 ~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~p-vilV~NK~Dl~~~~~~~~~~~~~l~~ 150 (308)
T 3iev_A 72 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKP-VIVVINKIDKIGPAKNVLPLIDEIHK 150 (308)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCC-EEEEEECGGGSSSGGGGHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCC-EEEEEECccCCCCHHHHHHHHHHHHH
Confidence 355777888899999999999999888888777 6777777888 89999999998322223323333333
Q ss_pred hhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 796 LLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 796 ~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.++ ...+++++||++| .|+++|++.|.+.++
T Consensus 151 ---~~~---~~~~i~~vSA~~g-----------~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 151 ---KHP---ELTEIVPISALKG-----------ANLDELVKTILKYLP 181 (308)
T ss_dssp ---HCT---TCCCEEECBTTTT-----------BSHHHHHHHHHHHSC
T ss_pred ---hcc---CCCeEEEEeCCCC-----------CCHHHHHHHHHHhCc
Confidence 332 1257999999987 389999999988765
No 82
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.69 E-value=3.8e-17 Score=175.41 Aligned_cols=111 Identities=20% Similarity=0.235 Sum_probs=86.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+++|+++|++|+|||||+++|.... ...| ...|+|+......+.+. +..+++|||||+
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~---~~v~---------------~~pg~Tv~~~~~~~~~~----~~~~~lvDtpG~ 58 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNAN---QRVG---------------NWPGVTVEKKTGEFLLG----EHLIEITDLPGV 58 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTS---EEEE---------------ECTTSSSEEEEEEEEET----TEEEEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC---CCcc---------------CCCCceEEEEEEEEEEC----CeEEEEEeCCCc
Confidence 4789999999999999999996322 1111 12477877777777777 789999999999
Q ss_pred CCcHH----------HHHHHh--hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 88 VDFTI----------EVERSL--RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~----------~~~~~l--~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
.+|.. .+..++ +.+|++|+|+|+++ ......++.++...++|+++|+||+|+.
T Consensus 59 ~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 59 YSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIA 123 (256)
T ss_dssp SSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred ccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 98864 233445 78999999999987 3455566778888899999999999973
No 83
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.68 E-value=2.3e-16 Score=173.37 Aligned_cols=158 Identities=20% Similarity=0.193 Sum_probs=116.1
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh--
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD-- 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~-- 726 (1021)
.++..++++|++|+|||||+|+|++....+... ..++|.+.....+..++..+.||||||+.+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~---------------~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~ 69 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISP---------------RPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS---------------SSCCCCSCEEEEEEETTEEEEEEECCCCCCCC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecC---------------CCCceeEEEEEEEEeCCcEEEEecCccccchh
Confidence 567789999999999999999999865332211 112333333334556788999999999876
Q ss_pred ------hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 727 ------YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 727 ------~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
|...+..+++.+|++++|+|++++....+...+..+... ++| +|+|+||+|+.+.... +.+.+..+
T Consensus 70 ~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p-~ilV~NK~Dl~~~~~~---~~~~~~~~-- 143 (301)
T 1wf3_A 70 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-ILLVGNKLDAAKYPEE---AMKAYHEL-- 143 (301)
T ss_dssp SHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSC-EEEEEECGGGCSSHHH---HHHHHHHT--
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCC-EEEEEECcccCCchHH---HHHHHHHh--
Confidence 667778888999999999999988877776666777766 788 8999999999763220 22233333
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.+ ..+++++||++| .++++|++.|.+.++
T Consensus 144 -~~----~~~~~~iSA~~g-----------~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 144 -LP----EAEPRMLSALDE-----------RQVAELKADLLALMP 172 (301)
T ss_dssp -ST----TSEEEECCTTCH-----------HHHHHHHHHHHTTCC
T ss_pred -cC----cCcEEEEeCCCC-----------CCHHHHHHHHHHhcc
Confidence 22 247899999987 489999999987664
No 84
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.68 E-value=3.8e-16 Score=161.22 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=84.2
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+....++|+++|+.|+|||||+++|+....... ++ ..|+......+.+. .+.+++||
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~------------~~-------~~t~~~~~~~~~~~----~~~~~i~D 69 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK------------HI-------TATVGYNVETFEKG----RVAFTVFD 69 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----------------CC-------CCCSSEEEEEEEET----TEEEEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc------------cc-------ccccceeEEEEEeC----CEEEEEEE
Confidence 355678999999999999999999953221110 01 11333333344455 89999999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhhc-----------CCCEEEEEeCcCCCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQKY-----------KVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~~-----------~~p~iiviNK~D~~~~ 144 (1021)
|||+.+|...+..+++.+|++|+|+|++++...... ..|..+... ++|+++|+||+|+...
T Consensus 70 t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 70 MGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp ECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred CCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 999999999999999999999999999987543332 344444433 8999999999999654
No 85
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.68 E-value=2.4e-16 Score=162.14 Aligned_cols=117 Identities=15% Similarity=0.202 Sum_probs=82.4
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+..+..+|+++|+.|+|||||+++|+..... .. .....|.|...... .+ +..+.+||
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~---------------~~~~~~~t~~~~~~--~~-----~~~~~l~D 75 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNL-AR---------------TSSKPGKTQTLNFY--II-----NDELHFVD 75 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-----------------------------CCEEEE--EE-----TTTEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cc---------------cCCCCCceeeEEEE--EE-----CCcEEEEE
Confidence 4456789999999999999999999742200 00 00122333332221 11 23699999
Q ss_pred CCC----------CCCcHHHHHHHhhcc---CeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 84 TPG----------HVDFTIEVERSLRVL---DGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 84 tPG----------~~~f~~~~~~~l~~~---D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
||| +..|...+..+++.+ |++++|+|++++.......+++++...++|+++|+||+|+..
T Consensus 76 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 76 VPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIP 148 (195)
T ss_dssp CCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 999 445555566666666 999999999999888888888888888999999999999864
No 86
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.67 E-value=1.4e-16 Score=186.17 Aligned_cols=118 Identities=16% Similarity=0.193 Sum_probs=92.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+...+|+++|++|+|||||+++|+........ ...|+|.+.....+.+. +..++|||||
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~-----------------~~~gtt~~~~~~~~~~~----~~~~~l~DT~ 251 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-----------------NVAGTTRDAVDTSFTYN----QQEFVIVDTA 251 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-----------------C------CTTSEEEEET----TEEEEETTGG
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccC-----------------CCCCeEEEEEEEEEEEC----CceEEEEECC
Confidence 45789999999999999999999743221111 23466777766677777 7899999999
Q ss_pred C----------CCCcHHHH-HHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 86 G----------HVDFTIEV-ERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G----------~~~f~~~~-~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
| +..|.... ..+++.+|++|+|+|++++...++..++..+...++|+++|+||+|+...
T Consensus 252 G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 252 GMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 321 (456)
T ss_dssp GTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred CCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence 9 45665543 45889999999999999999999999999999999999999999998643
No 87
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.67 E-value=3e-16 Score=165.30 Aligned_cols=168 Identities=20% Similarity=0.177 Sum_probs=118.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe-eCCeEEEEEecCCh----
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE-SENKHYAHVDCPGH---- 724 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~-~~~~~i~liDtpG~---- 724 (1021)
....++++|.+++|||||+|+|++.... .......|.|.+.....+. ..+..+.||||||+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 93 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRL--------------AFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAE 93 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSS--------------SCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcc--------------eeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCccc
Confidence 3567899999999999999999985310 0112234566666655555 55678999999995
Q ss_pred ------hhhHHHHHHHhhh---CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHH
Q psy5021 725 ------ADYIKNMITGAAQ---MDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRE 795 (1021)
Q Consensus 725 ------~~~~~~~~~~~~~---aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~ 795 (1021)
+.|...+..+++. +|++++|+|++++......+++..+...++| +|+|+||+|+.+..+ ......++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~Dl~~~~~-~~~~~~~~~~ 171 (223)
T 4dhe_A 94 VPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKP-IHSLLTKCDKLTRQE-SINALRATQK 171 (223)
T ss_dssp CCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCC-EEEEEECGGGSCHHH-HHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEeccccCChhh-HHHHHHHHHH
Confidence 4444444444444 8899999999998888888888888888898 999999999986332 2223333333
Q ss_pred hhhcc---ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 796 LLTEY---DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 796 ~l~~~---~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
.+..+ +. ....+++++||++| .|+++|+++|.+.++.+
T Consensus 172 ~l~~~~~~~~-~~~~~~~~~SA~~g-----------~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 172 SLDAYRDAGY-AGKLTVQLFSALKR-----------TGLDDAHALIESWLRPA 212 (223)
T ss_dssp HHHHHHHHTC-CSCEEEEEEBTTTT-----------BSHHHHHHHHHHHHC--
T ss_pred HHHhhhhccc-CCCCeEEEeecCCC-----------cCHHHHHHHHHHhcCcc
Confidence 33332 00 12478999999987 48999999998877544
No 88
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.67 E-value=2.9e-16 Score=159.32 Aligned_cols=119 Identities=18% Similarity=0.091 Sum_probs=81.9
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..+..+|+++|+.|+|||||+++|+...-... ..+.++.......+.+ ++..+.+.+|||
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt 68 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEF------------------QESTIGAAFFSQTLAV--NDATVKFEIWDT 68 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTT------------------SCCCSCCSEEEEEEEE--TTEEEEEEEEEC
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCc------------------CCCCceeEEEEEEEEE--CCEEEEEEEEeC
Confidence 34557899999999999999999975321110 0111111111112222 233678999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhh---cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQK---YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~---~~~p~iiviNK~D~~~ 143 (1021)
||+.+|...+..+++.+|++|+|+|+++....+.. ..+..+.. .++|+++|+||+|+..
T Consensus 69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 69 AGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 99999999999999999999999999876543333 33334433 3789999999999853
No 89
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.66 E-value=2.1e-16 Score=161.24 Aligned_cols=122 Identities=17% Similarity=0.130 Sum_probs=85.6
Q ss_pred CCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEE
Q psy5021 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMIN 80 (1021)
Q Consensus 1 m~~~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~ 80 (1021)
|.+..++..+|+++|+.|+|||||+++|+........ ...++.......+.+ ++....+.
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~--~~~~~~~~ 62 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS------------------NHTIGVEFGSKIINV--GGKYVKLQ 62 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC------------------CCCSEEEEEEEEEEE--TTEEEEEE
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCC------------------CCccceEEEEEEEEE--CCEEEEEE
Confidence 4445567889999999999999999999753321110 112222222222333 23347899
Q ss_pred EEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH----HHHhhcCCCEEEEEeCcCCC
Q psy5021 81 IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW----FQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 81 liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~----~~~~~~~~p~iiviNK~D~~ 142 (1021)
+|||||+.+|...+..+++.+|++|+|+|+++....+....| ......++|+++|+||+|+.
T Consensus 63 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 63 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp EEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 999999999999999999999999999999986443333333 22234679999999999984
No 90
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.66 E-value=5.5e-16 Score=159.24 Aligned_cols=116 Identities=13% Similarity=0.149 Sum_probs=83.5
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.....+|+++|+.|+|||||+++|+........ ...|.|.... +... +..+.+||
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~~~t~~~~---~~~~----~~~~~i~D 74 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS-----------------KTPGKTRSIN---FYLV----NSKYYFVD 74 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC-----------------SSCCCCCCEE---EEEE----TTTEEEEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCcccccc-----------------CCCCCccCeE---EEEE----CCcEEEEE
Confidence 4456679999999999999999999754311100 0112232221 2222 45688999
Q ss_pred CCC----------CCCcHHHHHHHhhcc---CeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 84 TPG----------HVDFTIEVERSLRVL---DGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 84 tPG----------~~~f~~~~~~~l~~~---D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
||| +..|...+..+++.+ |++++|+|++.+.......+++++...++|+++|+||+|+..
T Consensus 75 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 75 LPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVK 147 (195)
T ss_dssp CCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 999 334544455555544 999999999999888888888888888999999999999864
No 91
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.66 E-value=4.2e-17 Score=165.07 Aligned_cols=159 Identities=35% Similarity=0.445 Sum_probs=117.2
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+...+.++|.+++|||||+++|++.... .....++|.+.....+..++..+.+|||||+++|..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 70 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVT----------------EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT 70 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSS----------------CSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccc----------------cCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHH
Confidence 4567889999999999999999874311 111223444455555667788999999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC----CC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD----GE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~----~~ 805 (1021)
.+..++..+|++++|+|++++...++.+.+..+...++| +++|+||+|+.+.. .+.+...+ ...+.. ..
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~~--~~~~~~~~----~~~~~~~~~~~~ 143 (178)
T 2lkc_A 71 MRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKMDKPEAN--PDRVMQEL----MEYNLVPEEWGG 143 (178)
T ss_dssp SCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTTSSCSC--HHHHHHHH----TTTTCCBTTTTS
T ss_pred HHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECccCCcCC--HHHHHHHH----HhcCcChhHcCC
Confidence 777778899999999999998888888888887777888 99999999997621 11222222 221111 11
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.++++++||++| .|+++++++|.+.+
T Consensus 144 ~~~~~~~Sa~~~-----------~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 144 DTIFCKLSAKTK-----------EGLDHLLEMILLVS 169 (178)
T ss_dssp SEEEEECCSSSS-----------HHHHHHHHHHHHHH
T ss_pred cccEEEEecCCC-----------CCHHHHHHHHHHhh
Confidence 368999999987 48899998887643
No 92
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=4.4e-16 Score=160.00 Aligned_cols=118 Identities=16% Similarity=0.074 Sum_probs=82.9
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++..+|+++|+.|+|||||+++|+........ . ...|.+.... .+..++..+.+.+|||
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~------------~~~~~~~~~~----~~~~~~~~~~~~i~Dt 79 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNI----S------------PTIGASFMTK----TVPCGNELHKFLIWDT 79 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTC----C------------CCSSEEEEEE----EEECSSSEEEEEEEEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCc----C------------CCcceeEEEE----EEEeCCEEEEEEEEcC
Confidence 455679999999999999999999753211000 0 0112222222 2222334788999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 80 ~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 80 AGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 99999999999999999999999999986544443333 33332 378999999999984
No 93
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.66 E-value=1.1e-15 Score=155.48 Aligned_cols=114 Identities=18% Similarity=0.085 Sum_probs=82.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|.... .. .+ ..|+......+.+. ++.+.+||||
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~--~~------------~~-------~~t~g~~~~~~~~~----~~~l~i~Dt~ 68 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASED--IS------------HI-------TPTQGFNIKSVQSQ----GFKLNVWDIG 68 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSC--CE------------EE-------EEETTEEEEEEEET----TEEEEEEECS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCC--CC------------cc-------cCcCCeEEEEEEEC----CEEEEEEECC
Confidence 566899999999999999999995211 00 00 01222222344555 7899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHh----hcCCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQ----KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~----~~~~p~iiviNK~D~~~~ 144 (1021)
|+..|...+..+++.+|++++|+|+++....... ..+..+. ..++|+++|+||+|+...
T Consensus 69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 69 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp SCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred CCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 9999999999999999999999999876433322 2333332 257999999999999754
No 94
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.66 E-value=3.4e-16 Score=158.62 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=82.0
Q ss_pred CCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEE
Q psy5021 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMIN 80 (1021)
Q Consensus 1 m~~~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~ 80 (1021)
|..+..+..+|+++|+.|+|||||+++|+....... +. .|+..... ..+..++..+.+.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-------------~~-------~t~~~~~~-~~~~~~~~~~~~~ 60 (181)
T 2fn4_A 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSD-------------YD-------PTIEDSYT-KICSVDGIPARLD 60 (181)
T ss_dssp --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS-------------CC-------TTCCEEEE-EEEEETTEEEEEE
T ss_pred CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccc-------------cC-------CCcCceEE-EEEEECCEEEEEE
Confidence 544566788999999999999999999975421100 00 01111111 1122223357899
Q ss_pred EEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-----HHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 81 IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-----TVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 81 liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-----~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+|||||+.+|...+..+++.+|++++|+|+++....... .+++.....++|+++|+||+|+.
T Consensus 61 ~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 61 ILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp EEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred EEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999999999998899999999999999999875322222 22233334689999999999984
No 95
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.66 E-value=6e-16 Score=159.33 Aligned_cols=128 Identities=23% Similarity=0.168 Sum_probs=83.8
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEe-ecccCceeEEEEcC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFW-EVNKFKYMINIIDT 84 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~~~~~i~liDt 84 (1021)
+...+|+++|+.|+|||||++.|......... +...... .....|+........+ ..++..+.+++|||
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~------~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt 81 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRK------GEMVSLA----TEDERTLFFDFLPLDIGEVKGFKTRFHLYTV 81 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGB------CCCEEEE----CSSCEEEEEEECCSSCCCSSSCEEEEEEEEC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcccccc------ccccccc----cccccceeeeecccccccccCCceEEEEEeC
Confidence 45678999999999999999766432111000 0000000 0011122222111111 12344678999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh---------cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK---------YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~---------~~~p~iiviNK~D~~~ 143 (1021)
||+.+|...+..+++.+|++|+|+|++++...+....+..+.. .++|+++|+||+|+..
T Consensus 82 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 82 PGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp CSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred CChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 9999999999999999999999999997765555554443322 5899999999999864
No 96
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.66 E-value=1.2e-16 Score=173.54 Aligned_cols=111 Identities=19% Similarity=0.239 Sum_probs=84.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
..+|+++|++|+|||||+++|+... ...+ ...|+|+......+.+. +..+++|||||+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~---~~v~---------------~~~g~t~~~~~~~~~~~----~~~~~liDtpG~ 60 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR---QRVG---------------NWAGVTVERKEGQFSTT----DHQVTLVDLPGT 60 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC---EEEE---------------ECTTSSSEEEEEEEECS----SCEEEEEECCCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC---cccC---------------CCCCeeEEEEEEEEEeC----CCceEEEECcCC
Confidence 3689999999999999999996432 1111 22467777777777776 788999999999
Q ss_pred CCcHH---------H-HHHH--hhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 88 VDFTI---------E-VERS--LRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~---------~-~~~~--l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
.+|.. . +..+ .+.+|++|+|+|+++ ......++.++...++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 61 YSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIA 125 (274)
T ss_dssp SCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHH
T ss_pred CccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccch
Confidence 88862 1 1222 268999999999987 3445556677778899999999999973
No 97
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.66 E-value=8e-16 Score=158.09 Aligned_cols=114 Identities=15% Similarity=0.080 Sum_probs=77.5
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+... .. ++ ..|+......+.+. +..+++||||
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~--~~------------~~-------~~t~~~~~~~~~~~----~~~~~i~Dt~ 81 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE--IV------------TT-------IPTIGFNVETVEYK----NICFTVWDVG 81 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC--CE------------EE-------EEETTEEEEEEEET----TEEEEEEECC
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC--cc------------cc-------CCcCceeEEEEEEC----CEEEEEEECC
Confidence 345789999999999999999995211 10 00 11333333345555 7899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhh----cCCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQK----YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~----~~~p~iiviNK~D~~~~ 144 (1021)
|+.+|...+..+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+...
T Consensus 82 G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 82 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp -----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 9999999999999999999999999876433322 23333322 47999999999999653
No 98
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.66 E-value=7.2e-16 Score=158.02 Aligned_cols=115 Identities=16% Similarity=0.115 Sum_probs=81.9
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+........ ...|+......+.+. ++.+.+||||
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------------~~~t~~~~~~~~~~~----~~~~~l~Dt~ 75 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-------------------ILPTIGFSIEKFKSS----SLSFTVFDMS 75 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-------------------CCCCSSEEEEEEECS----SCEEEEEEEC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC-------------------cCCccceeEEEEEEC----CEEEEEEECC
Confidence 34578999999999999999999633211100 112333333445555 6899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHH-hh-----cCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQS-QK-----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~-~~-----~~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++|+|+|+++....+. ...+..+ .. .++|+++|+||+|+..
T Consensus 76 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 76 GQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp CSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred CCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 999999999999999999999999987532222 2233333 22 5899999999999964
No 99
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.65 E-value=1.4e-15 Score=156.00 Aligned_cols=122 Identities=16% Similarity=0.025 Sum_probs=82.2
Q ss_pred CCC-CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeee-EEEeecccC---
Q psy5021 1 MKN-KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV-SIFWEVNKF--- 75 (1021)
Q Consensus 1 m~~-~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~-~~~~~~~~~--- 75 (1021)
|.. +.++..+|+++|+.|+|||||+++|+...-... ...|+..... ...+..++.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------------~~~t~~~~~~~~~~~~~~~~~~~ 62 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSK--------------------FITTVGIDFREKRVVYRANGPDG 62 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--------------------CCCCCSEEEEEEEEEECTTSCCC
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcC--------------------cccccceeeeeEEEEEecCCccc
Confidence 443 456678999999999999999999975321100 0011111111 111111122
Q ss_pred ------ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh----cCCCEEEEEeCcCCC
Q psy5021 76 ------KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 76 ------~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~----~~~p~iiviNK~D~~ 142 (1021)
.+.+++|||||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 63 AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp SSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred ccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 56899999999999999999999999999999999876444332222 33322 589999999999985
No 100
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.65 E-value=4.5e-16 Score=159.66 Aligned_cols=111 Identities=17% Similarity=0.087 Sum_probs=82.0
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
..+|+++|+.|+|||||+++|....-. . ...|+......+.+. ++.+++|||||+
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~--~-------------------~~~t~~~~~~~~~~~----~~~~~i~Dt~G~ 77 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLA--T-------------------LQPTWHPTSEELAIG----NIKFTTFDLGGH 77 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCC--C-------------------CCCCCSCEEEEEEET----TEEEEEEECCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC--c-------------------cccCCCCCeEEEEEC----CEEEEEEECCCC
Confidence 458999999999999999999743211 0 012333334455666 689999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHh----hcCCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQ----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~----~~~~p~iiviNK~D~~~ 143 (1021)
.+|...+..+++.+|++++|+|++++...+.. ..+..+. ..++|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 78 IQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp GGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 99988888889999999999999987543332 2233332 35799999999999975
No 101
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=162.35 Aligned_cols=122 Identities=18% Similarity=0.133 Sum_probs=84.8
Q ss_pred CCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEE
Q psy5021 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMIN 80 (1021)
Q Consensus 1 m~~~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~ 80 (1021)
|..+.++..+|+++|+.|+|||||+++|+..... .+...+++.......+.+. +..+.++
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~--~~~~~~~ 61 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFS------------------GSYITTIGVDFKIRTVEIN--GEKVKLQ 61 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---------------------CCTTTBSEEEEEEEEEET--TEEEEEE
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCC------------------CccCCCceeEEEEEEEEEC--CEEEEEE
Confidence 4445677899999999999999999999531110 0112234444444444444 3347899
Q ss_pred EEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh--cCCCEEEEEeCcCCC
Q psy5021 81 IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 81 liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~--~~~p~iiviNK~D~~ 142 (1021)
+|||||+.+|...+..+++.+|++|+|+|++++........| ..+.. .++|+++|+||+|+.
T Consensus 62 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 62 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP 126 (181)
T ss_dssp EEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred EEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence 999999999998889999999999999999986444443333 22322 358999999999975
No 102
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.65 E-value=6.4e-16 Score=157.14 Aligned_cols=113 Identities=16% Similarity=0.093 Sum_probs=82.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...- .. ...|+......+.+. ++.+.+||||
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~-------------------~~~t~~~~~~~~~~~----~~~~~i~Dt~ 73 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV--VH-------------------TSPTIGSNVEEIVIN----NTRFLMWDIG 73 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC--EE-------------------EECCSSSSCEEEEET----TEEEEEEEES
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC--Cc-------------------cCCcCceeeEEEEEC----CEEEEEEECC
Confidence 3457899999999999999999974321 00 011222222345555 7899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHh----hcCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQ----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~----~~~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++|+|+|+++....+. ...|..+. ..++|+++|+||+|+..
T Consensus 74 G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 74 GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp SSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred CCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 999999888999999999999999998744332 33344433 36899999999999864
No 103
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.65 E-value=1.2e-15 Score=156.87 Aligned_cols=120 Identities=17% Similarity=0.145 Sum_probs=85.3
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
..+...+|+++|+.|+|||||+++|+....... ...+++.......+.+. +..+.+.+||
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~i~D 71 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTES------------------YISTIGVDFKIRTIELD--GKTIKLQIWD 71 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSC------------------CCCCSSEEEEEEEEEET--TEEEEEEEEE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCC------------------CCCcccceEEEEEEEEC--CEEEEEEEEE
Confidence 345678999999999999999999974322111 11233333333344443 3357899999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~~ 143 (1021)
|||+.+|...+..+++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+..
T Consensus 72 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 72 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 135 (196)
T ss_dssp ECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 999999999999999999999999999985433322223 3332 34789999999999864
No 104
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.65 E-value=4.9e-16 Score=158.60 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=83.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+... .. ++ ..|+......+.+. ++.+++||||
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~------------~~-------~~t~~~~~~~~~~~----~~~~~~~Dt~ 70 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VD------------TI-------SPTLGFNIKTLEHR----GFKLNIWDVG 70 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CS------------SC-------CCCSSEEEEEEEET----TEEEEEEEEC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CC------------cc-------cccCccceEEEEEC----CEEEEEEECC
Confidence 456789999999999999999996422 11 00 11223333345555 7899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHhh----cCCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQK----YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~~----~~~p~iiviNK~D~~~~ 144 (1021)
|+.+|...+..+++.+|++++|+|+++...... ...+..... .++|+++|+||+|+...
T Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 71 GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp CSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 999998888889999999999999988644333 233333332 57999999999999653
No 105
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.65 E-value=3.3e-16 Score=162.79 Aligned_cols=122 Identities=18% Similarity=0.132 Sum_probs=81.6
Q ss_pred CCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEE
Q psy5021 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMIN 80 (1021)
Q Consensus 1 m~~~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~ 80 (1021)
|....+...+|+++|+.|+|||||+++|+........ ...++....... +..++..+.+.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~t~~~~~~~~~--~~~~~~~~~~~ 60 (207)
T 1vg8_A 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY------------------KATIGADFLTKE--VMVDDRLVTMQ 60 (207)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC------------------CCCCSEEEEEEE--EESSSCEEEEE
T ss_pred CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCC------------------CCcccceEEEEE--EEECCEEEEEE
Confidence 5445567889999999999999999999754321110 111222222222 22234457899
Q ss_pred EEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHhh-------cCCCEEEEEeCcCCC
Q psy5021 81 IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQK-------YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 81 liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~~-------~~~p~iiviNK~D~~ 142 (1021)
||||||+.+|...+..+++.+|++|+|+|++++........|. .+.. .++|+++|+||+|+.
T Consensus 61 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp EEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred EEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 9999999999888888999999999999998764433333332 2211 478999999999986
No 106
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.65 E-value=1.7e-15 Score=154.06 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=80.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-... +. .|+.... ...+..++..+.+++||||
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~-------------~~-------~t~~~~~-~~~~~~~~~~~~l~i~Dt~ 74 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDD-------------YD-------PTIEDSY-LKHTEIDNQWAILDVLDTA 74 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSC-------------CC-------TTCCEEE-EEEEEETTEEEEEEEEECC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCC-------------CC-------CCcccee-EEEEEeCCcEEEEEEEECC
Confidence 3567899999999999999999974321100 00 0111111 1112223345678889999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-----HHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-----ETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-----~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|+.+|......+++.+|++++|+|+++...... ..+.+.....++|+++|+||+|+..
T Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 75 GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp SCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred CchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 999999999999999999999999998632222 2222333457899999999999853
No 107
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.65 E-value=4.2e-16 Score=158.60 Aligned_cols=123 Identities=20% Similarity=0.148 Sum_probs=64.2
Q ss_pred CCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEE
Q psy5021 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMIN 80 (1021)
Q Consensus 1 m~~~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~ 80 (1021)
|....+...+|+++|+.|+|||||+++|+..... .+...+++.......+.+. +..+.++
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~--~~~~~~~ 60 (183)
T 2fu5_C 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFN------------------STFISTIGIDFKIRTIELD--GKRIKLQ 60 (183)
T ss_dssp --CCCSEEEEEEEECCCCC----------------------------------CHHHHHCEEEEEEEEEET--TEEEEEE
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCC------------------CCCCCcccceeEEEEEEEC--CEEEEEE
Confidence 5444567889999999999999999999632110 1122233333333333333 3358899
Q ss_pred EEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCCC
Q psy5021 81 IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 81 liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~~ 143 (1021)
+|||||+.+|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+..
T Consensus 61 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp EEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred EEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 999999999988888899999999999999885433332223 33333 4789999999999863
No 108
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.64 E-value=5.1e-16 Score=168.73 Aligned_cols=111 Identities=15% Similarity=0.206 Sum_probs=87.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
++++|+++|++|+|||||+++|+... ...| ..+|+|+......+.|. ++.+++|||||
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~---~~~~---------------~~~~~t~~~~~~~~~~~----~~~~~l~DtpG 59 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLR---QHVG---------------NWPGVTVEKKEGIMEYR----EKEFLVVDLPG 59 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTC---EEEE---------------ECTTSSCEEEEEEEEET----TEEEEEEECCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCC---cccC---------------CCCCeEEEeeEEEEEEC----CceEEEEeCCC
Confidence 36899999999999999999996321 1211 23467887777778887 78899999999
Q ss_pred CCCcHH------HHHHHh--hccCeEEEEEeCCCCCchhHHHHHHHHhhcC-CCEEEEEeCcCC
Q psy5021 87 HVDFTI------EVERSL--RVLDGAVIIICASSGIQPQTETVWFQSQKYK-VPKMIFVNKMDR 141 (1021)
Q Consensus 87 ~~~f~~------~~~~~l--~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~-~p~iiviNK~D~ 141 (1021)
+.+|.. .+..++ ..+|++++|+|++.+ .+....+.++...+ +|+++|+||+|+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl 121 (271)
T 3k53_A 60 IYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDL 121 (271)
T ss_dssp CSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHH
T ss_pred ccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhc
Confidence 998865 333444 579999999999885 45566677777778 999999999996
No 109
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=5.2e-16 Score=159.43 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=115.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++... ........|.+.......+......+.||||||+++|..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 87 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHF--------------DHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHS 87 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCC--------------CTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCC--------------CCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHh
Confidence 457889999999999999999997431 111223345665555555555567899999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.+..+++.+|++|+|+|+++.... ....++..+... ++| +++|+||+|+.+.... ..+++.++++..+
T Consensus 88 ~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~v---~~~~~~~~~~~~~---- 159 (192)
T 2fg5_A 88 LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV-MAIAGNKCDLSDIREV---PLKDAKEYAESIG---- 159 (192)
T ss_dssp GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHTTT----
T ss_pred hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECccccccccc---CHHHHHHHHHHcC----
Confidence 999999999999999999875443 334445555544 566 9999999999752211 1133444555444
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||+++ .|++++++.|.+.++
T Consensus 160 -~~~~~~Sa~~~-----------~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 160 -AIVVETSAKNA-----------INIEELFQGISRQIP 185 (192)
T ss_dssp -CEEEECBTTTT-----------BSHHHHHHHHHHTCC
T ss_pred -CEEEEEeCCCC-----------cCHHHHHHHHHHHHH
Confidence 57999999987 489999999988664
No 110
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.64 E-value=7.1e-16 Score=155.95 Aligned_cols=118 Identities=16% Similarity=0.143 Sum_probs=83.0
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++..+|+++|+.|+|||||+++|+......... ...|.+...... .+ ++..+.+.+|||
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~t~~~~~~~~~~--~~--~~~~~~~~l~Dt 71 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCP----------------HTIGVEFGTRII--EV--SGQKIKLQIWDT 71 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCT----------------TSCCCCEEEEEE--EE--TTEEEEEEEEEC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCC----------------CccceEEEEEEE--EE--CCeEEEEEEEEC
Confidence 4567899999999999999999997543211100 011222222222 22 233678999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|++++........| ..+. ..++|+++|+||+|+.
T Consensus 72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 72 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp TTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 99999999999999999999999999986443333333 2222 3578999999999984
No 111
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.64 E-value=1.1e-15 Score=155.09 Aligned_cols=123 Identities=17% Similarity=0.136 Sum_probs=71.5
Q ss_pred CCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEE
Q psy5021 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMIN 80 (1021)
Q Consensus 1 m~~~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~ 80 (1021)
|..+.++..+|+++|+.|+|||||+++|+...-... ....++.......+.+. ++....+.
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~-~~~~~~~~ 61 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQ------------------YKATIGADFLTKEVTVD-GDKVATMQ 61 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTT------------------C---CCCSCEEEEECCS-SSCCEEEE
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcc------------------cCCccceEEEEEEEEEc-CCcEEEEE
Confidence 544456788999999999999999999975321100 01111111111222221 13457899
Q ss_pred EEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh-------hcCCCEEEEEeCcCCC
Q psy5021 81 IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ-------KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 81 liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~-------~~~~p~iiviNK~D~~ 142 (1021)
+|||||+.+|...+..+++.+|++|+|+|+++.........| ..+. ..++|+++|+||+|+.
T Consensus 62 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 62 VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp EECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred EEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 999999999999999999999999999999886443333333 2222 1678999999999985
No 112
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.64 E-value=1.4e-16 Score=173.02 Aligned_cols=155 Identities=22% Similarity=0.264 Sum_probs=114.3
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.++++|.+|+|||||+|+|++... ......|+|++.....++..+..+.||||||+.+|..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~----------------~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 65 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ----------------RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE----------------EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc----------------ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCcccc
Confidence 457889999999999999999998532 1223358888888888888889999999999887641
Q ss_pred ----------HHHHH--hhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 730 ----------NMITG--AAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 730 ----------~~~~~--~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
.+..+ ...+|++++|+|+++ ......++..+...++| +|+|+||+|+.+.... . .....+.
T Consensus 66 ~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p-~ivv~NK~Dl~~~~~~-~---~~~~~l~ 138 (274)
T 3i8s_A 66 ISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIP-CIVALNMLDIAEKQNI-R---IEIDALS 138 (274)
T ss_dssp ----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCC-EEEEEECHHHHHHTTE-E---ECHHHHH
T ss_pred ccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCC-EEEEEECccchhhhhH-H---HHHHHHH
Confidence 12222 268999999999986 34455566677778999 9999999998652210 0 1122233
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
+.++ ++++++||++| .|+++|+++|.+.++
T Consensus 139 ~~lg-----~~~i~~SA~~g-----------~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 139 ARLG-----CPVIPLVSTRG-----------RGIEALKLAIDRYKA 168 (274)
T ss_dssp HHHT-----SCEEECCCGGG-----------HHHHHHHHHHHTCCC
T ss_pred HhcC-----CCEEEEEcCCC-----------CCHHHHHHHHHHHHh
Confidence 3334 47999999988 489999999988664
No 113
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.64 E-value=2.4e-15 Score=150.59 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=79.5
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+++|+.|+|||||+++|+........ ...++.......+.+ ++..+.+.+|||||+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~--~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENK------------------EPTIGAAFLTQRVTI--NEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTC------------------CCCSSEEEEEEEEEE--TTEEEEEEEEEECCSG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCC------------------CCccceeEEEEEEEE--CCEEEEEEEEECCCCh
Confidence 57999999999999999999753221000 011122111122222 2336789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
+|...+..+++.+|++++|+|+++.........| ..+. ..++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL 121 (170)
T ss_dssp GGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred hhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 9999999999999999999999986443333333 2332 2478999999999985
No 114
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.64 E-value=3.9e-16 Score=158.36 Aligned_cols=161 Identities=15% Similarity=0.164 Sum_probs=111.3
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++.... .......|.+.......+......+.||||||+++|.
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 75 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFV--------------EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 75 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCT--------------TTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCC--------------CcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh
Confidence 34577899999999999999999974311 0111222333333333333334578999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++|+|+|+++... ....+++..+... ++| +++|+||+|+.+..... .+++.++++..+
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 148 (181)
T 2efe_B 76 SLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV-MALAGNKSDLLDARKVT---AEDAQTYAQENG--- 148 (181)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSC---HHHHHHHHHHTT---
T ss_pred hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccccCC---HHHHHHHHHHcC---
Confidence 999999999999999999987543 3334555555554 556 89999999997532111 123444444444
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||++| .++++++++|.+.++
T Consensus 149 --~~~~~~Sa~~g-----------~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 149 --LFFMETSAKTA-----------TNVKEIFYEIARRLP 174 (181)
T ss_dssp --CEEEECCSSSC-----------TTHHHHHHHHHHTCC
T ss_pred --CEEEEEECCCC-----------CCHHHHHHHHHHHHH
Confidence 47999999987 389999999988664
No 115
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.64 E-value=3e-16 Score=157.16 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=108.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++.... .......|.+.......+......+.+|||||+++|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 67 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFA--------------ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS 67 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--------------TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhh
Confidence 3467788999999999999999974311 11112234444334444433345789999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.+..+++.+|++++|+|+++....+. ..++..+... ++| +++|+||+|+.+.....+...++..++.+..+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~---- 142 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDII-IALVGNKIDXLQEGGERKVAREEGEKLAEEKG---- 142 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT----
T ss_pred hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCccccccccCCCHHHHHHHHHHcC----
Confidence 99999999999999999987543322 3333333332 566 88999999987531100011122333444343
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||++| .|+++++++|.+.++
T Consensus 143 -~~~~~~Sa~~~-----------~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 143 -LLFFETSAKTG-----------ENVNDVFLGIGEKIP 168 (170)
T ss_dssp -CEEEECCTTTC-----------TTHHHHHHHHHTTSC
T ss_pred -CEEEEEeCCCC-----------CCHHHHHHHHHHHHh
Confidence 47999999987 389999999987553
No 116
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.64 E-value=7.9e-16 Score=154.09 Aligned_cols=116 Identities=15% Similarity=0.148 Sum_probs=80.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..+|+++|+.|+|||||+++|+...-.... +...|.+.......+ ++..+.+++|||||
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~----~~~~~~~~~~D~~G 64 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQ----------------ESTIGAAFLTQTVCL----DDTTVKFEIWDTAG 64 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC----------------CCCSSEEEEEEEEEE----TTEEEEEEEEEECC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCccceEEEEEEEEE----CCEEEEEEEEeCCC
Confidence 4568999999999999999999753211000 011122222222222 23367899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
+.+|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 65 QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp SGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred cHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 999999999999999999999999876443333333 33332 478999999999984
No 117
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.64 E-value=9.6e-16 Score=153.59 Aligned_cols=117 Identities=17% Similarity=0.109 Sum_probs=81.5
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-.... ....|.+.... .+.+ ++..+.+.+||||
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~--~~~~--~~~~~~~~~~Dt~ 63 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNI----------------NPTIGASFMTK--TVQY--QNELHKFLIWDTA 63 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTC----------------CCCCSEEEEEE--EEEE--TTEEEEEEEEEEC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCC----------------CCceeEEEEEE--EEEE--CCeEEEEEEEcCC
Confidence 34578999999999999999999753211000 01112222222 1222 2336789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
|+.+|...+..+++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 64 GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp CSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred CchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 9999999999999999999999999986544443333 3333 3468899999999985
No 118
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.64 E-value=5.1e-16 Score=161.39 Aligned_cols=123 Identities=17% Similarity=0.158 Sum_probs=85.1
Q ss_pred CCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEE
Q psy5021 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMIN 80 (1021)
Q Consensus 1 m~~~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~ 80 (1021)
|....++..+|+++|+.|+|||||+++|+...-... ....++.......+.+. +..+.+.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~--~~~~~~~ 60 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTND------------------YISTIGVDFKIKTVELD--GKTVKLQ 60 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTT------------------CCCSSCCCEEEEEEEET--TEEEEEE
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCC------------------CCCcccceeEEEEEEEC--CEEEEEE
Confidence 544456778999999999999999999975321100 01122222222233332 3357899
Q ss_pred EEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCCC
Q psy5021 81 IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 81 liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~~ 143 (1021)
+|||||+.+|...+..+++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+..
T Consensus 61 l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp EECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred EEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 999999999998889999999999999999986544443333 2332 24689999999999864
No 119
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.64 E-value=9.5e-16 Score=157.00 Aligned_cols=118 Identities=17% Similarity=0.081 Sum_probs=82.4
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+...+|+++|+.|+|||||+++|+........ . ...|.+.....+.+ ++..+.+++|||
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-------------~---~t~~~~~~~~~~~~----~~~~~~~~l~Dt 78 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAF-------------V---STVGIDFKVKTVYR----HDKRIKLQIWDT 78 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC-------------C---CCCCCEEEEEEEEE----TTEEEEEEEEEC
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCc-------------C---CceeEEEEEEEEEE----CCeEEEEEEEeC
Confidence 455789999999999999999999753321110 0 01122332222222 233678999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhh---cCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~---~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+.
T Consensus 79 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 79 AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp CSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 99999998899999999999999999875433332 23334433 479999999999984
No 120
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.64 E-value=5.9e-16 Score=155.02 Aligned_cols=160 Identities=15% Similarity=0.149 Sum_probs=111.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++.... ...+...|.+.......+...+..+.+|||||+++|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 70 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFH--------------EFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 70 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--------------TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCC--------------CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhh
Confidence 4567889999999999999999974311 11223345555444444444456789999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.+..+++.+|++++|+|+++... .....++..+... ++| +++|+||+|+.+..... .++..++++..+
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 142 (170)
T 1r2q_A 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV-IALSGNKADLANKRAVD---FQEAQSYADDNS---- 142 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT----
T ss_pred hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCccccccC---HHHHHHHHHHcC----
Confidence 99999999999999999987543 2334444444443 455 88889999987522110 123333444333
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||++| .|+++++++|.+.++
T Consensus 143 -~~~~~~Sa~~g-----------~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 143 -LLFMETSAKTS-----------MNVNEIFMAIAKKLP 168 (170)
T ss_dssp -CEEEECCTTTC-----------TTHHHHHHHHHHTSC
T ss_pred -CeEEEEeCCCC-----------CCHHHHHHHHHHHHh
Confidence 57999999987 389999999987653
No 121
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.64 E-value=8.5e-16 Score=157.86 Aligned_cols=118 Identities=16% Similarity=0.128 Sum_probs=82.7
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+...+|+++|+.|+|||||+++|+..... .+....++.......+.+. +..+.+.+|||
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~--~~~~~l~l~Dt 82 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFC------------------EACKSTVGVDFKIKTVELR--GKKIRLQIWDT 82 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------------------------CCTTEEEEEEEEEET--TEEEEEEEEEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCC------------------cCCCCccceeEEEEEEEEC--CeEEEEEEEeC
Confidence 455678999999999999999999532110 0112223333333333333 33578999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|++++...+....| ..+. ..++|+++|+||+|+.
T Consensus 83 ~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 83 AGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 99999999999999999999999999986544443333 2222 3479999999999984
No 122
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.64 E-value=2.4e-15 Score=155.73 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=80.6
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++..+|+++|+.|+|||||+++|+...-. .+....++.......+.+. +..+.+.+|||
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~--~~~~~l~i~Dt 85 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFS------------------ERQGSTIGVDFTMKTLEIQ--GKRVKLQIWDT 85 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------CEEEEEEEET--TEEEEEEEECC
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCC------------------CCCCCCcceEEEEEEEEEC--CEEEEEEEEEC
Confidence 456789999999999999999999742210 0011111122222233333 33578999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhh---cCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~---~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|+++....+.. ..+..+.. .++|+++|+||+|+.
T Consensus 86 ~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 86 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp TTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 99999999999999999999999999875433222 22233332 578999999999985
No 123
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.64 E-value=2.3e-15 Score=155.59 Aligned_cols=118 Identities=16% Similarity=0.172 Sum_probs=78.1
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++..+|+++|+.|+|||||+++|+...-... + ....|.+.... .+.+ ++..+.++||||
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-------------~---~~t~~~~~~~~--~~~~--~~~~~~l~i~Dt 84 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFREN-------------I---SATLGVDFQMK--TLIV--DGERTVLQLWDT 84 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC--------------------------CEEE--EEEE--TTEEEEEEEEEC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCcc-------------C---CCCccceeEEE--EEEE--CCEEEEEEEEEC
Confidence 45678999999999999999999974321100 0 01112222222 2222 233678999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|++++...+....| ..+. ..++|+++|+||+|+.
T Consensus 85 ~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 85 AGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp TTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred CCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 99999999999999999999999999876544433333 2232 2479999999999974
No 124
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.63 E-value=2.2e-15 Score=156.08 Aligned_cols=119 Identities=20% Similarity=0.172 Sum_probs=82.9
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+...+|+++|+.|+|||||+++|+...-.... . ...|.+.... .+.+ ++....+.+|||
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------~---~t~~~~~~~~--~~~~--~~~~~~~~l~Dt 64 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAF-------------V---STVGIDFKVK--TIYR--NDKRIKLQIWDT 64 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCC-------------C---CCCSEEEEEE--EEEE--TTEEEEEEEEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCc-------------C---CccceeEEEE--EEEE--CCeEEEEEEEEC
Confidence 456789999999999999999999743211000 0 0012222222 1222 233678999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~~ 143 (1021)
||+.+|...+..+++.+|++|+|+|++++........| ..+.. .++|+++|+||+|+..
T Consensus 65 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 65 AGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp CCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred CCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 99999999999999999999999999876443333333 33333 4799999999999853
No 125
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.63 E-value=7.6e-16 Score=155.74 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=81.5
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+.-+|+++|+.|+|||||+++|....- ..+....++.......+.+. ++..+.+++||||
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~------------------~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~Dt~ 64 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETF------------------GKQYKQTIGLDFFLRRITLP-GNLNVTLQIWDIG 64 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGT------------------THHHHHTTTSSEEEEEEEET-TTEEEEEEEEECT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcC------------------CCCCCCceeEEEEEEEEEeC-CCCEEEEEEEECC
Confidence 3457899999999999999999974321 01122223322223334443 1124789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh-----cCCC-EEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK-----YKVP-KMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~-----~~~p-~iiviNK~D~~ 142 (1021)
|+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .+.| +++|+||+|+.
T Consensus 65 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 65 GQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp TCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred CCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 9999999999999999999999999886443333333 33332 2667 68899999985
No 126
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.63 E-value=1.5e-15 Score=152.07 Aligned_cols=116 Identities=17% Similarity=0.102 Sum_probs=79.6
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
...+|+++|+.|+|||||+++|+...-.. +....++.......+.+ ++..+.+.+|||||
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~G 61 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNP------------------SFITTIGIDFKIKTVDI--NGKKVKLQIWDTAG 61 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------------------------CCEEEEEEES--SSCEEEEEEECCTT
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCC------------------CCCCccceeEEEEEEEE--CCEEEEEEEEeCCC
Confidence 46789999999999999999997432110 01112222222222222 34457899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
+.+|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 62 QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp GGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred ChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 999998899999999999999999875433222223 33332 478999999999984
No 127
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.63 E-value=7.8e-16 Score=153.52 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=78.0
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-.+|+++|++|+|||||+++|+...-.... . .|+.... ...+..++..+.+.+|||||+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-------------~-------~~~~~~~-~~~~~~~~~~~~~~l~D~~G~ 61 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKY-------------D-------PTIEDFY-RKEIEVDSSPSVLEILDTAGT 61 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCC-------------C-------TTCCEEE-EEEEEETTEEEEEEEEECCCT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccC-------------C-------CCcceeE-EEEEEECCEEEEEEEEECCCc
Confidence 358999999999999999999753211100 0 0111000 111222333567999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhH-H----HHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQT-E----TVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~----~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
.+|...+..+++.+|++++|+|+++....+. . .+++.+...++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred hhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 9999999999999999999999987533222 2 22222333589999999999974
No 128
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.63 E-value=1.3e-15 Score=157.45 Aligned_cols=112 Identities=18% Similarity=0.128 Sum_probs=77.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..+|+++|+.|+|||||+++|.... .. . ...|+......+.+. +..+++|||||
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~--~~------------~-------~~~t~~~~~~~~~~~----~~~l~i~Dt~G 78 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDR--LG------------Q-------HVPTLHPTSEELTIA----GMTFTTFDLGG 78 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------------------------CCCCCSCEEEEET----TEEEEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC--CC------------c-------cCCCCCceeEEEEEC----CEEEEEEECCC
Confidence 34679999999999999999994211 00 0 112333334455666 68999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHh----hcCCCEEEEEeCcCCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQ----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~----~~~~p~iiviNK~D~~~ 143 (1021)
+.+|...+..+++.+|++++|+|+++....... ..+..+. ..++|+++|+||+|+..
T Consensus 79 ~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 79 HIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp ----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred cHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 999988888899999999999999886433322 2223332 35799999999999975
No 129
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.63 E-value=1.5e-15 Score=151.85 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=79.6
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
++..+|+++|+.|+|||||+++|+...-... ...|+........+..++..+.+.+||||
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--------------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~ 62 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKD--------------------YKKTIGVDFLERQIQVNDEDVRLMLWDTA 62 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCC--------------------SSCCCSSSEEEEEEEETTEEEEEEEECCT
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCC--------------------CCCceEEEEEEEEEEECCEEEEEEEEcCC
Confidence 4567899999999999999999975321100 00111111111122222336789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh--cCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~--~~~p~iiviNK~D~~ 142 (1021)
|+.+|...+..+++.+|++++|+|+++....+....| ..+.. .+.|+++|+||+|+.
T Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 63 GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp TGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred CcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 9999988899999999999999999875433222223 33322 489999999999985
No 130
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.63 E-value=3.3e-16 Score=160.39 Aligned_cols=114 Identities=14% Similarity=0.070 Sum_probs=81.8
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
++..+|+++|+.|+|||||+++|... ... ++ ..|+......+.+. ++.+++||||
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~--~~~------------~~-------~~t~~~~~~~~~~~----~~~~~~~Dt~ 74 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLG--DVV------------TT-------VPTVGVNLETLQYK----NISFEVWDLG 74 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCS--CCE------------EE-------CSSTTCCEEEEEET----TEEEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC--CCC------------Cc-------CCCCceEEEEEEEC----CEEEEEEECC
Confidence 35678999999999999999999421 110 00 11222223345555 7899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHhh----cCCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQK----YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~~----~~~p~iiviNK~D~~~~ 144 (1021)
|+.+|...+..+++.+|++|+|+|+++...... ...+..... .++|+++|+||+|+...
T Consensus 75 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 75 GQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp CSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred CCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 999998888888999999999999998643332 223333322 47999999999999654
No 131
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.63 E-value=4.9e-16 Score=167.06 Aligned_cols=112 Identities=15% Similarity=0.214 Sum_probs=85.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|++|+|||||+++|..... ..+ ...|+|+......+.+. ++.+.+||||
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~---~~~---------------~~pg~tv~~~~~~~~~~----~~~~~l~Dtp 60 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQ---YVA---------------NWPGVTVEKKEGVFTYK----GYTINLIDLP 60 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCE---EEE---------------ECTTSCCEEEEEEEEET----TEEEEEEECC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCC---ccc---------------CCCCceEEEEEEEEEEC----CeEEEEEECC
Confidence 3457899999999999999999963211 111 12477888777777776 7899999999
Q ss_pred CCCCcHH------HHHHHh--hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCC
Q psy5021 86 GHVDFTI------EVERSL--RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDR 141 (1021)
Q Consensus 86 G~~~f~~------~~~~~l--~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~ 141 (1021)
|+.+|.. ....++ ..+|++++|+|+++. .....++.++...++|+++|+||+|+
T Consensus 61 G~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl 122 (258)
T 3a1s_A 61 GTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDE 122 (258)
T ss_dssp CCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHH
T ss_pred CcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCC
Confidence 9988863 123344 479999999999874 33445667778889999999999996
No 132
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.63 E-value=7.3e-16 Score=155.90 Aligned_cols=160 Identities=15% Similarity=0.068 Sum_probs=110.0
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC---eEEEEEecCChh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN---KHYAHVDCPGHA 725 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~---~~i~liDtpG~~ 725 (1021)
.+.+.+.++|.+++|||||+++|++... ........| .+.....+...+ ..+.+|||||++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~--------------~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 67 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETF--------------GKQYKQTIG--LDFFLRRITLPGNLNVTLQIWDIGGQT 67 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGT--------------THHHHHTTT--SSEEEEEEEETTTEEEEEEEEECTTCC
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcC--------------CCCCCCcee--EEEEEEEEEeCCCCEEEEEEEECCCCc
Confidence 3567789999999999999999997431 111222233 333344455544 678999999999
Q ss_pred hhHHHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc-----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 726 DYIKNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV-----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 726 ~~~~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~-----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
+|...+..+++.+|++++|+|+++.... ....++..+... +.|++++|+||+|+.+..... .++...+.+.
T Consensus 68 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~---~~~~~~~~~~ 144 (178)
T 2hxs_A 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK---PEKHLRFCQE 144 (178)
T ss_dssp TTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC---HHHHHHHHHH
T ss_pred cccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccC---HHHHHHHHHH
Confidence 9988889999999999999999875432 223344444432 667688999999997522111 1233344444
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.+ ++++++||++| .|+++++++|.+.+.
T Consensus 145 ~~-----~~~~~~Sa~~~-----------~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 145 NG-----FSSHFVSAKTG-----------DSVFLCFQKVAAEIL 172 (178)
T ss_dssp HT-----CEEEEECTTTC-----------TTHHHHHHHHHHHHT
T ss_pred cC-----CcEEEEeCCCC-----------CCHHHHHHHHHHHHH
Confidence 44 47899999987 388999999877553
No 133
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.63 E-value=2.5e-15 Score=154.55 Aligned_cols=159 Identities=16% Similarity=0.204 Sum_probs=110.8
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCC------
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPG------ 723 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG------ 723 (1021)
+...+.++|.+++|||||+++|++... ........|.|.+.....+ +..+.+|||||
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~ 84 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKN--------------LARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKV 84 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEEEE---TTTEEEEECCCBCCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--------------ccccCCCCCceeeEEEEEE---CCcEEEEECCCCCcccc
Confidence 457889999999999999999997431 1112233455555444333 34699999999
Q ss_pred ----hhhhHHHHHHHhhhC---CEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHh
Q psy5021 724 ----HADYIKNMITGAAQM---DGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIREL 796 (1021)
Q Consensus 724 ----~~~~~~~~~~~~~~a---D~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~ 796 (1021)
++.|...+..++..+ |++++|+|++++...+..+.+.++...++| +++|+||+|+.+..+ .+...+++.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~-~~~~~~~~~~~ 162 (195)
T 1svi_A 85 SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIP-VIVIATKADKIPKGK-WDKHAKVVRQT 162 (195)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGG-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCChHH-HHHHHHHHHHH
Confidence 777877777777766 999999999998877777777777778888 999999999986332 33333444443
Q ss_pred hhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 797 LTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+... ...+++++||++| .|+++++++|.+.+
T Consensus 163 ~~~~----~~~~~~~~Sa~~~-----------~gv~~l~~~l~~~l 193 (195)
T 1svi_A 163 LNID----PEDELILFSSETK-----------KGKDEAWGAIKKMI 193 (195)
T ss_dssp HTCC----TTSEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred Hccc----CCCceEEEEccCC-----------CCHHHHHHHHHHHh
Confidence 3211 2368999999987 38999999887643
No 134
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.63 E-value=9.7e-16 Score=152.11 Aligned_cols=151 Identities=17% Similarity=0.187 Sum_probs=110.0
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh------
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD------ 726 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~------ 726 (1021)
.+.++|.+++|||||+++|.+.... ..+...+.|.+.....+...+..+.+|||||+.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 67 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRSA---------------VVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEK 67 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEETTEEEEEEECGGGCSSSSCCH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCee---------------eccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHH
Confidence 4678899999999999999974311 1223345666777777778888999999999887
Q ss_pred -hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 727 -YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 727 -~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+...+..++..+|++++|+|++++..........++...++| +++|+||+|+.+.+ +++.++. .+++
T Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~-------~~~~~~~-~~~~--- 135 (161)
T 2dyk_A 68 KIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKP-VILVATKVDDPKHE-------LYLGPLY-GLGF--- 135 (161)
T ss_dssp HHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCC-EEEEEECCCSGGGG-------GGCGGGG-GGSS---
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCC-EEEEEECcccccch-------HhHHHHH-hCCC---
Confidence 556677788999999999999988776666677777777888 99999999997632 2223333 3333
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++| .|+++++++|.+.+
T Consensus 136 -~~~~~~Sa~~~-----------~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 136 -GDPIPTSSEHA-----------RGLEELLEAIWERL 160 (161)
T ss_dssp -CSCEECBTTTT-----------BSHHHHHHHHHHHC
T ss_pred -CCeEEEecccC-----------CChHHHHHHHHHhC
Confidence 25899999987 48999999987755
No 135
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=7.3e-16 Score=159.59 Aligned_cols=119 Identities=18% Similarity=0.148 Sum_probs=82.6
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.++..+|+++|+.|+|||||+++|+...-... ....++++.....+.+ ++..+.+++||
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~--~~~~~~l~l~D 81 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPG------------------QGATIGVDFMIKTVEI--NGEKVKLQIWD 81 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTT------------------CCCCCSEEEEEEEEEE--TTEEEEEEEEE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCC------------------CCCccceeEEEEEEEE--CCEEEEEEEEE
Confidence 345678999999999999999999975321100 0111222222223333 23357899999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
|||+.+|...+..+++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 82 t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 82 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp ECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 999999999999999999999999999875433322233 2222 3478999999999984
No 136
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.63 E-value=1.9e-15 Score=151.22 Aligned_cols=111 Identities=21% Similarity=0.200 Sum_probs=77.5
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
..+|+++|++|+|||||+++|..... ..+ ...|+|+......+.+. +..+.+|||||+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~---~~~---------------~~~~~t~~~~~~~~~~~----~~~l~i~Dt~G~ 60 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV---YIG---------------NWPGVTVEKKEGEFEYN----GEKFKVVDLPGV 60 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS---SCC--------------------CCCCCEEEEEET----TEEEEEEECCCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe---ecc---------------CCCCcceeeeEEEEEEC----CcEEEEEECCCc
Confidence 46899999999999999999963211 000 12355555555556666 788999999999
Q ss_pred CCcH------HHHHHHhh--ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 88 VDFT------IEVERSLR--VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~------~~~~~~l~--~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
.+|. .....+++ .+|++++|+|++.. ......+..+...++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 61 YSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp SCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred ccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence 9885 22344444 79999999999862 223344455666789999999999973
No 137
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.63 E-value=1.5e-15 Score=154.19 Aligned_cols=117 Identities=20% Similarity=0.206 Sum_probs=77.6
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..+..+|+++|+.|+|||||+++|+...-... +.+ |..... ...+..++..+.+++|||
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~-------------~~~-------t~~~~~-~~~~~~~~~~~~~~l~Dt 61 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDS-------------YDP-------TIENTF-TKLITVNGQEYHLQLVDT 61 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSC-------------CCT-------TCCEEE-EEEEEETTEEEEEEEEEC
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCC-------------CCC-------CccccE-EEEEEECCEEEEEEEEeC
Confidence 34578999999999999999999974321100 000 111111 111122333578899999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-----HHHHHhhcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-----VWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-----~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++++|+|+++........ +++.+...++|+++|+||+|+.
T Consensus 62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 62 AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp CCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred CCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 999999888888899999999999998743332222 2233334589999999999985
No 138
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=3.2e-15 Score=151.45 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=75.2
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++..+|+++|+.|+|||||+++|+........ ....++.......+.+ ++..+.+++|||
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----------------~~~t~~~~~~~~~~~~--~~~~~~~~~~Dt 67 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT-----------------FISTVGIDFRNKVLDV--DGVKVKLQMWDT 67 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCC-----------------CCCCCSCEEEEEEEEE--TTEEEEEEEEEC
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCC-----------------cCCceeeEEEEEEEEE--CCEEEEEEEEeC
Confidence 355679999999999999999999753321110 0111222221112222 334578999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~~ 143 (1021)
||+.+|...+..+++.+|++|+|+|++++...+....| ..+. ..++|+++|+||+|+..
T Consensus 68 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp CCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred CCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 99999999999999999999999999876433332222 3332 26799999999999863
No 139
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.63 E-value=1.8e-15 Score=152.91 Aligned_cols=118 Identities=15% Similarity=0.113 Sum_probs=81.9
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++..+|+++|+.|+|||||+++|+...... +..+.++.......+.+ ++....+.+|||
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~~i~Dt 63 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDT------------------QLFHTIGVEFLNKDLEV--DGHFVTMQIWDT 63 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----------------------CCSEEEEEEEEEE--TTEEEEEEEEEC
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCC------------------CCCCceeeeEEEEEEEE--CCEEEEEEEEeC
Confidence 3456899999999999999999997432110 01112222222223333 233578999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---h----cCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---K----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~----~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++++|+|++++...+....| ..+. . .++|+++|+||+|+.
T Consensus 64 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp CCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred CCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 99999999999999999999999999986443332323 2221 1 678999999999985
No 140
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=1.6e-15 Score=152.16 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=77.5
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-.+|+++|+.|+|||||+++|+...-.... ..|+...... .+..++..+.+.+|||||+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------------~~t~~~~~~~-~~~~~~~~~~~~~~Dt~G~ 61 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESY--------------------IPTVEDTYRQ-VISCDKSICTLQITDTTGS 61 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSC--------------------CCCSCEEEEE-EEEETTEEEEEEEEECCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------------CCCccccEEE-EEEECCEEEEEEEEECCCc
Confidence 468999999999999999999742211000 0011111100 1111233578999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchh-HHHHHHHHhh-----cCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQ-TETVWFQSQK-----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~-t~~~~~~~~~-----~~~p~iiviNK~D~~ 142 (1021)
.+|...+..+++.+|++++|+|+++..... ....+..+.. .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 62 HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp SSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred hhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 999999999999999999999998753222 2333443333 379999999999974
No 141
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.63 E-value=8.3e-16 Score=155.46 Aligned_cols=159 Identities=16% Similarity=0.128 Sum_probs=108.6
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
-+.+.+.++|.+++|||||+++|++.... .......|.+.......+......+.||||||+++|.
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 78 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFM--------------ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR 78 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC--------------SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC--------------CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh
Confidence 34578899999999999999999974311 1112223444444433333334578999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+.+.... ..+++.++++..+
T Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~--- 151 (179)
T 1z0f_A 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDV---TYEEAKQFAEENG--- 151 (179)
T ss_dssp HHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS---CHHHHHHHHHHTT---
T ss_pred hhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccccccccc---CHHHHHHHHHHcC---
Confidence 999999999999999999987543222 233333443 3566 9999999999752211 1123444444444
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||++| .|+++++++|.+.
T Consensus 152 --~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 175 (179)
T 1z0f_A 152 --LLFLEASAKTG-----------ENVEDAFLEAAKK 175 (179)
T ss_dssp --CEEEECCTTTC-----------TTHHHHHHHHHHH
T ss_pred --CEEEEEeCCCC-----------CCHHHHHHHHHHH
Confidence 57999999987 3888999888654
No 142
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.62 E-value=1.1e-15 Score=154.66 Aligned_cols=115 Identities=19% Similarity=0.197 Sum_probs=80.2
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-.+|+++|+.|+|||||+++|+....... ....+++......+.+. +..+.+.+|||||+
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~Dt~G~ 73 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNT------------------YQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQ 73 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSS------------------CCCCCSEEEEEEEEEET--TEEEEEEEEEECCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC------------------CCCceeeEEEEEEEEEC--CeEEEEEEEECCCc
Confidence 46899999999999999999974322111 01122332222233332 33578999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
.+|...+..+++.+|++|+|+|+++.........| ..+. ..++|+++|+||+|+.
T Consensus 74 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 74 ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp GGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 99999999999999999999999875332222222 2222 3579999999999984
No 143
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=2.3e-15 Score=154.83 Aligned_cols=119 Identities=16% Similarity=0.149 Sum_probs=82.5
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..+..+|+++|+.|+|||||+++|+...-.... .. |+.... ...+..++..+.+++|||
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~------~~--------------t~~~~~-~~~~~~~~~~~~~~i~D~ 73 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEY------VP--------------TVFDHY-AVSVTVGGKQYLLGLYDT 73 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSC------CC--------------SSCCCE-EEEEESSSCEEEEEEECC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCC------CC--------------ccccee-EEEEEECCEEEEEEEEEC
Confidence 345679999999999999999999854211000 00 111111 112222344578999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhhc--CCCEEEEEeCcCCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQKY--KVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~~--~~p~iiviNK~D~~~~ 144 (1021)
||+.+|...+..+++.+|++|+|+|+++....+... .| ..+... ++|+++|+||+|+...
T Consensus 74 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 74 AGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp CCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred CCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 999999988889999999999999998764333322 23 444443 8999999999999643
No 144
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.62 E-value=2.5e-15 Score=150.09 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=78.5
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-.+|+++|+.|+|||||+++|+...-... + ..|+.... ...+..++..+.+.+|||||+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~-------------~-------~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~ 61 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEK-------------Y-------DPTIEDSY-RKQVEVDCQQCMLEILDTAGT 61 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCS-------------C-------CCCSEEEE-EEEEESSSCEEEEEEEEECSS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCC-------------C-------CCCccceE-EEEEEECCEEEEEEEEECCCh
Confidence 35899999999999999999975321100 0 01111111 112222344678999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHH----hhcCCCEEEEEeCcCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~----~~~~~p~iiviNK~D~~ 142 (1021)
.+|...+..+++.+|++++|+|+++...... ...+..+ ...++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp CSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 9999999999999999999999987432222 1222222 23589999999999985
No 145
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.62 E-value=3.1e-15 Score=152.72 Aligned_cols=116 Identities=14% Similarity=0.138 Sum_probs=76.5
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+.-+|+++|+.|+|||||+++|+......... +.+.......+.+ ++..+.+++|||||
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-------------------~t~~~~~~~~~~~--~~~~~~~~i~Dt~G 61 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYD-------------------PTIEDSYRKQVVI--DGETCLLDILDTAG 61 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCC-------------------TTCCEEEEEEEEE--TTEEEEEEEEECCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCC-------------------CCchheEEEEEEE--CCcEEEEEEEECCC
Confidence 34589999999999999999997533211100 0011111111222 23356789999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH----hhcCCCEEEEEeCcCCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS----QKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~----~~~~~p~iiviNK~D~~~ 143 (1021)
+.+|...+..+++.+|++++|+|+++.........| ..+ ...++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp C---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred cHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 999999999999999999999999875433332222 222 235799999999999863
No 146
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.62 E-value=1.8e-15 Score=152.56 Aligned_cols=113 Identities=18% Similarity=0.193 Sum_probs=79.0
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
..|+++|++|+|||||+++|......... ...+.|.......+.+. +..+.+|||||+.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~-----------------~~~~~t~~~~~~~~~~~----~~~~~l~Dt~G~~ 63 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVT-----------------DIAGTTRDVLREHIHID----GMPLHIIDTAGLR 63 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCC-----------------SSTTCCCSCEEEEEEET----TEEEEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceee-----------------CCCCceeceeeEEEEEC----CeEEEEEECCCcc
Confidence 47999999999999999999743321111 11233443333445555 6679999999997
Q ss_pred CcHHH--------HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh---cCCCEEEEEeCcCCC
Q psy5021 89 DFTIE--------VERSLRVLDGAVIIICASSGIQPQTETVWFQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~--------~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~---~~~p~iiviNK~D~~ 142 (1021)
++... ...+++.+|++++|+|+++.........|..+.. .++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 64 EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp CCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 65311 2346789999999999998766555555555443 369999999999974
No 147
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=2.5e-15 Score=154.36 Aligned_cols=117 Identities=19% Similarity=0.172 Sum_probs=81.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+........ . ...|.+.... .+.+ ++..+.+.|||||
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-------------~---~t~~~~~~~~--~~~~--~~~~~~~~i~Dt~ 72 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPEL-------------A---ATIGVDFKVK--TISV--DGNKAKLAIWDTA 72 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC-------------C---CCCSEEEEEE--EEEE--TTEEEEEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccC-------------C---CccceEEEEE--EEEE--CCeEEEEEEEeCC
Confidence 34578999999999999999999753211000 0 0012222222 2222 2336789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh----cCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~----~~~p~iiviNK~D~~ 142 (1021)
|+.+|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 73 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 73 GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp SSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred CchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 9999999999999999999999999876443333333 33333 478999999999984
No 148
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.62 E-value=8.5e-16 Score=153.95 Aligned_cols=161 Identities=19% Similarity=0.212 Sum_probs=112.7
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++... ........|.+.......+......+.+|||||+++|.
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 69 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSF--------------DPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR 69 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCC--------------CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCC--------------CCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh
Confidence 3557889999999999999999997431 11122334555555555554445678999999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++++|+|+++....+. ..++..+... ++| +++|+||+|+.+..+... ++...+.+..+
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~~--- 142 (170)
T 1z0j_A 70 ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIV-VAIAGNKCDLTDVREVME---RDAKDYADSIH--- 142 (170)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSE-EEEEEECTTCGGGCCSCH---HHHHHHHHHTT---
T ss_pred cccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECCccccccccCH---HHHHHHHHHcC---
Confidence 888899999999999999987544333 3444555544 345 888999999975322111 22333444333
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.+++++||+++ .|++++++.|.+.++
T Consensus 143 --~~~~~~Sa~~~-----------~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 143 --AIFVETSAKNA-----------ININELFIEISRRIP 168 (170)
T ss_dssp --CEEEECBTTTT-----------BSHHHHHHHHHHHCC
T ss_pred --CEEEEEeCCCC-----------cCHHHHHHHHHHHHh
Confidence 57999999987 389999999877553
No 149
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.62 E-value=2e-15 Score=151.37 Aligned_cols=117 Identities=17% Similarity=0.110 Sum_probs=74.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
++..+|+++|+.|+|||||+++|+...-.... . .|+........+..++..+.+.+||||
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~------------------~--~t~~~~~~~~~~~~~~~~~~l~i~Dt~ 63 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKH------------------I--TTLGASFLTKKLNIGGKRVNLAIWDTA 63 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSC------------------C--CCCSCEEEEEEEESSSCEEEEEEEECC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCC------------------C--CccceEEEEEEEEECCEEEEEEEEECC
Confidence 45578999999999999999999753211000 0 111111111223333446789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH---hhcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS---QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~---~~~~~p~iiviNK~D~~ 142 (1021)
|+.+|...+..+++.+|++++|+|+++....+....| ..+ ...++|+++|+||+|+.
T Consensus 64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 64 GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp CC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred CcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 9999998888889999999999999876443333333 222 23579999999999985
No 150
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.62 E-value=5.7e-16 Score=157.53 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=79.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+... ... ...|+......+.+. +..+.+||||
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~-------------------~~~t~~~~~~~~~~~----~~~~~i~Dt~ 70 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGE--VVT-------------------TKPTIGFNVETLSYK----NLKLNVWDLG 70 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSE--EEE-------------------ECSSTTCCEEEEEET----TEEEEEEEEC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC--cCc-------------------cCCcCccceEEEEEC----CEEEEEEECC
Confidence 567899999999999999999995211 000 011222223345555 7899999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHh----hcCCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQ----KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~----~~~~p~iiviNK~D~~~~ 144 (1021)
|+.+|...+..+++.+|++++|+|+++....+. ...+.... ..++|+++|+||+|+...
T Consensus 71 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 71 GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp ----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred CCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 999998888899999999999999988744332 23334433 367999999999998653
No 151
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=156.51 Aligned_cols=119 Identities=15% Similarity=0.076 Sum_probs=82.6
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+.++..+|+++|+.|+|||||+++|+......... ...|.+.... .+..++....+.+||
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~----------------~t~~~~~~~~----~~~~~~~~~~~~i~D 80 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSR----------------TTIGVEFSTR----TVMLGTAAVKAQIWD 80 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCC----------------CCSSEEEEEE----EEEETTEEEEEEEEE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC----------------CccceeEEEE----EEEECCEEEEEEEEe
Confidence 34567899999999999999999997533221110 0012222211 122223367899999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhh---cCCCEEEEEeCcCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~---~~~p~iiviNK~D~~ 142 (1021)
|||+.+|...+..+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+.
T Consensus 81 t~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 81 TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp ESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred CCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 999999999999999999999999999875433322 23333332 478999999999985
No 152
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.62 E-value=1.2e-15 Score=156.20 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=79.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-.... ...++.......+.+ ++..+.+++||||
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~--~~~~~~~~l~Dt~ 77 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT------------------EATIGVDFRERAVDI--DGERIKIQLWDTA 77 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC------------------CCCCSCCEEEEEEEE--TTEEEEEEEEECC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCC------------------CCCcceEEEEEEEEE--CCEEEEEEEEECC
Confidence 45689999999999999999999753221100 011111111122222 2335789999999
Q ss_pred CCCCcH-HHHHHHhhccCeEEEEEeCCCCCchhHHHHH-----HHHhhcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFT-IEVERSLRVLDGAVIIICASSGIQPQTETVW-----FQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~-~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-----~~~~~~~~p~iiviNK~D~~ 142 (1021)
|+.+|. ..+..+++.+|++|+|+|+++.........| +.+...++|+++|+||+|+.
T Consensus 78 G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 78 GQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp CSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred CchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999988 7788889999999999999875332222222 22224579999999999984
No 153
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.61 E-value=2.4e-15 Score=150.12 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=75.9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..+|+++|+.|+|||||+++|+...-.... . ..+.......+.+ ++..+.+.+|||||
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----~--------------~t~~~~~~~~~~~--~~~~~~~~l~D~~G 61 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDY-----E--------------PTKADSYRKKVVL--DGEEVQIDILDTAG 61 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCC-----C--------------TTCCEEEEEEEEE--TTEEEEEEEEECCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCC-----C--------------CCcceEEEEEEEE--CCEEEEEEEEECCC
Confidence 3578999999999999999999753311000 0 0000111111222 23357899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH----hhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~----~~~~~p~iiviNK~D~~ 142 (1021)
+.+|...+..+++.+|++++|+|+++.........| ..+ ...++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 62 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp ---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred cchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 999999999999999999999999875433222222 222 23489999999999985
No 154
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=1.7e-15 Score=154.79 Aligned_cols=160 Identities=18% Similarity=0.152 Sum_probs=106.8
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++.... .... |+......+..++..+.+|||||+++|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~---------------~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 75 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV---------------HTSP----TIGSNVEEIVINNTRFLMWDIGGQESLRS 75 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE---------------EEEC----CSCSSCEEEEETTEEEEEEECCC----CG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC---------------cCcC----CCccceEEEEECCEEEEEEECCCCHhHHH
Confidence 4678899999999999999999964311 0111 22222334556788999999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..++..+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+... .+++ .+.+....+..
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~~i----~~~~~~~~~~~ 149 (187)
T 1zj6_A 76 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMT-VAEI----SQFLKLTSIKD 149 (187)
T ss_dssp GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTCCC-HHHH----HHHHTGGGCCS
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCe-EEEEEECCCCcCCCC-HHHH----HHHhChhhhcC
Confidence 88889999999999999998653 344445444443 3566 999999999975211 2222 22222211222
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTP 845 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~~ 845 (1021)
..++++++||++| .|+++++++|.+.++.+
T Consensus 150 ~~~~~~~~Sa~~g-----------~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 150 HQWHIQACCALTG-----------EGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp SCEEEEECBTTTT-----------BTHHHHHHHHHHHHCC-
T ss_pred CCcEEEEccCCCC-----------cCHHHHHHHHHHHHHHH
Confidence 3468999999987 38999999998765433
No 155
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=153.48 Aligned_cols=117 Identities=14% Similarity=0.105 Sum_probs=72.6
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
++..+|+++|++|+|||||+++|......... ...|.+..... +.+ ++..+.+.+||||
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-----------------~~~~~~~~~~~--~~~--~~~~~~~~~~D~~ 60 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-----------------EQLGEDVYERT--LTV--DGEDTTLVVVDTW 60 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-----------------CCSSSSEEEEE--EEE--TTEEEEEEEECCC
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-----------------CccccceeEEE--EEE--CCEEEEEEEEecC
Confidence 34678999999999999999999632211000 11233332222 222 2335689999999
Q ss_pred CCCC--cHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhh----cCCCEEEEEeCcCCCC
Q psy5021 86 GHVD--FTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQK----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~--f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~----~~~p~iiviNK~D~~~ 143 (1021)
|+.. +.......++.+|++++|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 61 g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 61 EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp -------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred CCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 9988 555566677899999999999875433332 23334443 3799999999999863
No 156
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.61 E-value=3.4e-16 Score=168.00 Aligned_cols=150 Identities=21% Similarity=0.212 Sum_probs=110.0
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH---
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK--- 729 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~--- 729 (1021)
+++++|.+|+|||||+|+|++.... .....|+|++.....+..++..+.||||||+.++..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~----------------v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~ 66 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQR----------------VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAE 66 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEE----------------EEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC----
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC----------------ccCCCCceEEEEEEEEEECCeEEEEEeCCCccccccccc
Confidence 5688999999999999999985321 223347888888888888899999999999987753
Q ss_pred -------HHHHHh--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 730 -------NMITGA--AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 730 -------~~~~~~--~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
.+..++ ..+|++|+|+|+++ .......+..+...++| +|+|+||+|+.+.... . .....+.+.+
T Consensus 67 ~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~p-vilv~NK~Dl~~~~~~-~---~~~~~l~~~l 139 (256)
T 3iby_A 67 GISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKP-VVVALNMMDIAEHRGI-S---IDTEKLESLL 139 (256)
T ss_dssp --CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSC-EEEEEECHHHHHHTTC-E---ECHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCC-EEEEEEChhcCCcCCc-H---HHHHHHHHHc
Confidence 233444 78999999999986 33444455566667889 9999999998752211 0 1122222333
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+ ++++++||++| .|+++|+++|.+.
T Consensus 140 g-----~~vi~~SA~~g-----------~gi~el~~~i~~~ 164 (256)
T 3iby_A 140 G-----CSVIPIQAHKN-----------IGIPALQQSLLHC 164 (256)
T ss_dssp C-----SCEEECBGGGT-----------BSHHHHHHHHHTC
T ss_pred C-----CCEEEEECCCC-----------CCHHHHHHHHHhh
Confidence 4 57999999988 4899999999875
No 157
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=1.9e-15 Score=155.08 Aligned_cols=118 Identities=16% Similarity=0.082 Sum_probs=82.6
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+...+|+++|+.|+|||||+++|+...-..... ...|++.... .+..++..+.+.||||
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~t~~~~~~~~----~~~~~~~~~~~~i~Dt 79 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFV----------------STVGIDFKVK----TVYRHEKRVKLQIWDT 79 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEE----------------EEETTTEEEE----EEEETTTTEEEEEECH
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccC----------------CCeeeEEEEE----EEEECCEEEEEEEEeC
Confidence 3456789999999999999999998543211100 0012222222 2222344788999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHhh---cCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~~---~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|+++...... ...+..+.. .++|+++|+||+|+.
T Consensus 80 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 80 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp HHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 9999999999999999999999999987533222 222333333 579999999999984
No 158
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.61 E-value=8.1e-16 Score=153.87 Aligned_cols=154 Identities=21% Similarity=0.242 Sum_probs=103.9
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH-
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI- 728 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~- 728 (1021)
+...++++|.+++|||||+++|++.... .+...|+|++.....+..++..+.+|||||+++|.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 65 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVY----------------IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTA 65 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSS----------------CC-----CCCCCEEEEEETTEEEEEEECCCCSCSSS
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCee----------------ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCC
Confidence 3467889999999999999999974311 11223556665566666778899999999998773
Q ss_pred -----HHHHHHhh--hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 729 -----KNMITGAA--QMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 729 -----~~~~~~~~--~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
.....+++ .+|++++|+|+++ ..+...++..+...++| +|+|+||+|+...... . .+...+.+.++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~i~v~D~~~--~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~-~---~~~~~~~~~~~ 138 (165)
T 2wji_A 66 NSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGAN-LLLALNKMDLAKSLGI-E---IDVDKLEKILG 138 (165)
T ss_dssp SSHHHHHHHHHHHHHCCSEEEEEEETTC--HHHHHHHHHHHHHTTCC-EEEEEECHHHHHHTTC-C---CCHHHHHHHHT
T ss_pred cchhHHHHHHHHhcCCCCEEEEEecCCc--hhHhHHHHHHHHhcCCC-EEEEEEchHhccccCh-h---hHHHHHHHHhC
Confidence 22334443 7999999999986 23334455556667888 9999999998642110 0 01222333333
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++| +|++++++.|.+.+
T Consensus 139 -----~~~~~~SA~~~-----------~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 139 -----VKVVPLSAAKK-----------MGIEELKKAISIAV 163 (165)
T ss_dssp -----SCEEECBGGGT-----------BSHHHHHHHHHHHT
T ss_pred -----CCEEEEEcCCC-----------CCHHHHHHHHHHHh
Confidence 46899999988 48999999887644
No 159
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.61 E-value=1.9e-15 Score=152.73 Aligned_cols=162 Identities=19% Similarity=0.162 Sum_probs=110.0
Q ss_pred CcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCC
Q psy5021 646 STDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPG 723 (1021)
Q Consensus 646 ~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG 723 (1021)
...++.+.+.++|.+++|||||+++|++.... .....+++.+.....+..++ ..+.+|||||
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G 72 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFD----------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCC----------------SSCCCCCSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCceeeEEEEEEEEECCeEEEEEEEECCC
Confidence 34456688999999999999999999964311 11122334444444455555 4788999999
Q ss_pred hhhhHHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 724 HADYIKNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 724 ~~~~~~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
+++|...+..++..+|++++|+|+++... .....++..+.. .++| +++|+||+|+.+..... ..+...+++.
T Consensus 73 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~ 148 (179)
T 2y8e_A 73 QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVS---TEEGERKAKE 148 (179)
T ss_dssp SGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECGGGGGGCCSC---HHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccCcCC---HHHHHHHHHH
Confidence 99999988899999999999999987433 223334433333 2566 89999999997532211 1222333333
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.+ ++++++||+++ .++++++++|.+.++
T Consensus 149 ~~-----~~~~~~Sa~~~-----------~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 149 LN-----VMFIETSAKAG-----------YNVKQLFRRVAAALP 176 (179)
T ss_dssp HT-----CEEEEEBTTTT-----------BSHHHHHHHHHHTCC
T ss_pred cC-----CeEEEEeCCCC-----------CCHHHHHHHHHHHHh
Confidence 33 57999999987 389999999987654
No 160
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.61 E-value=1.5e-15 Score=176.55 Aligned_cols=113 Identities=18% Similarity=0.150 Sum_probs=68.9
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+|+|++|+|||||+|+|+.....+. ....|+|.+.....+.+. ++.++||||||+.
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~v-----------------s~~~gtT~d~~~~~i~~~----g~~l~liDT~G~~ 292 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIV-----------------SHMPGTTRDYIEECFIHD----KTMFRLTDTAGLR 292 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-----------------------------------CEEEEET----TEEEEEEC-----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccc-----------------CCCCCceEEEEEEEEEEC----CeEEEEEECCCCC
Confidence 3599999999999999999964322211 123466776666667777 7899999999998
Q ss_pred CcHHHHH--------HHhhccCeEEEEEeCCCCCch----hHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 89 DFTIEVE--------RSLRVLDGAVIIICASSGIQP----QTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 89 ~f~~~~~--------~~l~~~D~~ilvvda~~g~~~----~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
+|...+. .+++.+|++|+|+|++++... ....+++.+. ++|+++|+||+|+...
T Consensus 293 ~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 293 EAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAAN 358 (476)
T ss_dssp ---------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTT
T ss_pred cchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCc
Confidence 8765443 367889999999999998776 4444444443 7999999999999754
No 161
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.61 E-value=9.9e-15 Score=145.20 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=77.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+++|+.|+|||||+++|+........ . .|+.... ...+..++..+.+.+|||||+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----~---------------~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~ 62 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEC-----D---------------PTIEDSY-RKQVVIDGETCLLDILDTAGQE 62 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCC-----C---------------TTCCEEE-EEEEEETTEEEEEEEEECCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcccc-----C---------------CccceEE-EEEEEECCEEEEEEEEECCCch
Confidence 47999999999999999999753211100 0 0111110 1111222346789999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HHHHHh----hcCCCEEEEEeCcCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTET-VWFQSQ----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~~~~~----~~~~p~iiviNK~D~~~ 143 (1021)
+|...+..+++.+|++++|+|+++........ .+..+. ..++|+++++||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred hhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 99999999999999999999998754322222 223332 23799999999999864
No 162
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.61 E-value=1.3e-15 Score=156.37 Aligned_cols=118 Identities=16% Similarity=0.091 Sum_probs=81.1
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..+..+|+++|+.|+|||||+++|+........ ....|.+... ..+.+ ++..+.+++|||
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~--~~~~~--~~~~~~~~i~Dt 77 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGA--RMVNI--DGKQIKLQIWDT 77 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC---------------------CCSSEEE--EEEEE--TTEEEEEEEECC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEE--EEEEE--CCEEEEEEEEEC
Confidence 345679999999999999999999753221110 0011222221 12222 233578999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HHHHHhh---cCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VWFQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~~~~~~---~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|+++....+... .+..+.. .++|+++|+||+|+.
T Consensus 78 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 78 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp TTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 999999988899999999999999998754333322 2233332 479999999999984
No 163
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.60 E-value=6.7e-15 Score=150.58 Aligned_cols=159 Identities=14% Similarity=0.060 Sum_probs=110.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++..... .... |+......+...+..+.||||||+++|..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~----t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 82 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNE--------------DMIP----TVGFNMRKITKGNVTIKLWDIGGQPRFRS 82 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC--------------SCCC----CCSEEEEEEEETTEEEEEEEECCSHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCC--------------ccCC----CCceeEEEEEeCCEEEEEEECCCCHhHHH
Confidence 45778999999999999999999743110 0111 22223334667788999999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..+++.+|++|+|+|+++... ....+++..+.. .++| +++|+||+|+.+... .+++ .+.+.......
T Consensus 83 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~~~----~~~~~~~~~~~ 156 (188)
T 1zd9_A 83 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLPGALD-EKEL----IEKMNLSAIQD 156 (188)
T ss_dssp THHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTCCC-HHHH----HHHTTGGGCCS
T ss_pred HHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCccCCC-HHHH----HHHhChhhhcc
Confidence 99999999999999999987543 333344443332 4677 999999999975321 1222 22222111222
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
...+++++||++| .|+++++++|.+.+.
T Consensus 157 ~~~~~~~~SA~~g-----------~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 157 REICCYSISCKEK-----------DNIDITLQWLIQHSK 184 (188)
T ss_dssp SCEEEEECCTTTC-----------TTHHHHHHHHHHTCC
T ss_pred CCeeEEEEECCCC-----------CCHHHHHHHHHHHHH
Confidence 3568999999987 389999999987654
No 164
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.60 E-value=9.4e-15 Score=152.74 Aligned_cols=130 Identities=22% Similarity=0.217 Sum_probs=85.5
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-. . ...|+......+.+. ....+.+++||||
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~--~-------------------~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~ 62 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYR--D-------------------TQTSITDSSAIYKVN-NNRGNSLTLIDLP 62 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCC--C-------------------BCCCCSCEEEEEECS-STTCCEEEEEECC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc--c-------------------ccCCcceeeEEEEec-CCCccEEEEEECC
Confidence 45678999999999999999999753311 0 011211222223333 1125789999999
Q ss_pred CCCCcHH-HHHHHhhccCeEEEEEeCCCCCchhHH---HHHHHH------hhcCCCEEEEEeCcCCCCC-CHHHHHHHHH
Q psy5021 86 GHVDFTI-EVERSLRVLDGAVIIICASSGIQPQTE---TVWFQS------QKYKVPKMIFVNKMDRIGA-NYNNCIIDIK 154 (1021)
Q Consensus 86 G~~~f~~-~~~~~l~~~D~~ilvvda~~g~~~~t~---~~~~~~------~~~~~p~iiviNK~D~~~~-~~~~~~~~i~ 154 (1021)
|+.+|.. .+..+++.+|++|+|+|+++ ...+.. ..|... ...++|+++|+||+|+... ......+.+.
T Consensus 63 G~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~ 141 (214)
T 2fh5_B 63 GHESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLE 141 (214)
T ss_dssp CCHHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred CChhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHH
Confidence 9999988 67778999999999999986 222222 333322 1347899999999999765 3555556665
Q ss_pred HHhC
Q psy5021 155 KKFN 158 (1021)
Q Consensus 155 ~~l~ 158 (1021)
+.++
T Consensus 142 ~~l~ 145 (214)
T 2fh5_B 142 KELN 145 (214)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 165
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.60 E-value=3e-15 Score=153.35 Aligned_cols=160 Identities=19% Similarity=0.176 Sum_probs=110.1
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++....... ...|+......+..++..+.||||||+++|.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-----------------ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYR 81 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-----------------CCCCSSEEEEEEECSSCEEEEEEECCSTTTG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------cCCccceeEEEEEECCEEEEEEECCCCHHHH
Confidence 35678899999999999999999975411100 1123333444566677899999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
..+..++..+|++|+|+|+++... ....+++..+.. .++| +++|+||+|+.+... .++ +.+.+....
T Consensus 82 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~~----~~~~~~~~~ 155 (190)
T 2h57_A 82 NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMDLRDAVT-SVK----VSQLLCLEN 155 (190)
T ss_dssp GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTSTTCCC-HHH----HHHHHTGGG
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCe-EEEEEeCcCcccCCC-HHH----HHHHhChhh
Confidence 888888999999999999987432 233344444443 3667 999999999975221 222 222332112
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+....++++++||++| .|+++++++|.+.+
T Consensus 156 ~~~~~~~~~~~Sa~~~-----------~gi~~l~~~l~~~i 185 (190)
T 2h57_A 156 IKDKPWHICASDAIKG-----------EGLQEGVDWLQDQI 185 (190)
T ss_dssp CCSSCEEEEECBTTTT-----------BTHHHHHHHHHHHC
T ss_pred ccCCceEEEEccCCCC-----------cCHHHHHHHHHHHH
Confidence 2223578999999987 38999999987755
No 166
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.60 E-value=2.8e-15 Score=156.48 Aligned_cols=118 Identities=15% Similarity=0.076 Sum_probs=80.4
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+...+|+++|+.|+|||||+++|+...-... ....++.......+.+. +..+.+.||||
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt 76 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPS------------------FITTIGIDFKIKTVDIN--GKKVKLQLWDT 76 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCS------------------SSCCCSCCEEEEEEEET--TEEEEEEEECC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcc------------------cCCcccceEEEEEEEEC--CEEEEEEEEeC
Confidence 34567999999999999999999974321100 01122222222233333 33478999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 77 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp TTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred CCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 99999988889999999999999999875433222222 33332 378999999999984
No 167
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.60 E-value=1.2e-14 Score=150.27 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=53.2
Q ss_pred eeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH-hhcCCCEEEEEeCcCC
Q psy5021 77 YMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS-QKYKVPKMIFVNKMDR 141 (1021)
Q Consensus 77 ~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~-~~~~~p~iiviNK~D~ 141 (1021)
..+.||||||+.+|...+..+++.+|++|+|+|++++...+....| ..+ ...+.|+++|+||+|+
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~ 159 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK 159 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc
Confidence 7899999999999999999999999999999999987544443333 333 3356999999999993
No 168
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.60 E-value=1.5e-15 Score=167.05 Aligned_cols=161 Identities=19% Similarity=0.187 Sum_probs=113.5
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh-h
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA-D 726 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~-~ 726 (1021)
..++..++++|++|+|||||+|+|++....+.... .+.|.+.....+..++..+.||||||+. +
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~---------------~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~ 69 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRK---------------AQTTRHRIVGIHTEGAYQAIYVDTPGLHME 69 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCC---------------SSCCSSCEEEEEEETTEEEEEESSSSCCHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCC---------------CCcceeeEEEEEEECCeeEEEEECcCCCcc
Confidence 35677899999999999999999998643322111 1223333333356678899999999987 3
Q ss_pred hHH--------HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 727 YIK--------NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 727 ~~~--------~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
+.. .+..++..+|++++|+|+++ ...+++..+..+...+.| +|+++||+|+..... .+.+.+.++.+
T Consensus 70 ~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P-~ilvlNK~D~~~~~~---~~~~~l~~l~~ 144 (301)
T 1ega_A 70 EKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAP-VILAVNKVDNVQEKA---DLLPHLQFLAS 144 (301)
T ss_dssp HHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSC-EEEEEESTTTCCCHH---HHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCC-EEEEEECcccCccHH---HHHHHHHHHHH
Confidence 322 22344578899999999988 778888777777666888 888999999876222 22334444444
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.+++ ..++++||+++ .+++.|++.+...++
T Consensus 145 ~~~~----~~~i~iSA~~g-----------~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 145 QMNF----LDIVPISAETG-----------LNVDTIAAIVRKHLP 174 (301)
T ss_dssp TSCC----SEEEECCTTTT-----------TTHHHHHHHHHTTCC
T ss_pred hcCc----CceEEEECCCC-----------CCHHHHHHHHHHhCC
Confidence 4443 36899999987 388999999987665
No 169
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.60 E-value=6e-15 Score=150.20 Aligned_cols=115 Identities=16% Similarity=0.066 Sum_probs=79.0
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
..+|+++|+.|+|||||+++|+...-.... .. |+.... ......++..+.+.+|||||+
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~------~~--------------t~~~~~-~~~~~~~~~~~~~~i~Dt~G~ 63 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEY------IP--------------TVFDNY-SANVMVDGKPVNLGLWDTAGQ 63 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSC------CC--------------CSCCEE-EEEEEETTEEEEEEEECCCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCc------CC--------------ccccee-EEEEEECCEEEEEEEEECCCC
Confidence 468999999999999999999743211000 00 111000 111112234678889999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhhc--CCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQKY--KVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~~--~~p~iiviNK~D~~~ 143 (1021)
.+|...+..+++.+|++++|+|++++...+... .| ..+... ++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123 (186)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHT
T ss_pred HhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccc
Confidence 999888888999999999999998864444332 33 333333 899999999999854
No 170
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.60 E-value=5e-15 Score=172.19 Aligned_cols=116 Identities=21% Similarity=0.192 Sum_probs=85.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
...+|+|+|++|+|||||+++|+.....+.. ...|+|.+.....+.+. +..+.+|||||
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~-----------------~~~gtT~d~~~~~i~~~----g~~~~l~Dt~G 237 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVS-----------------PIPGTTRDPVDDEVFID----GRKYVFVDTAG 237 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-----------------CCC------CCEEEEET----TEEEEESSCSC
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccC-----------------CCCCCcCCceEEEEEEC----CEEEEEEECCC
Confidence 4578999999999999999999743221111 12356666666677777 77899999999
Q ss_pred CCCcHH------------HHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 87 HVDFTI------------EVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 87 ~~~f~~------------~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
+..+.. ....+++.+|++++|+|++++...+...++..+...++|+++++||+|+..
T Consensus 238 ~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 238 LRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVV 306 (439)
T ss_dssp C-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGST
T ss_pred CccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCC
Confidence 854432 235678899999999999999988888888888888999999999999863
No 171
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.60 E-value=7.2e-15 Score=150.85 Aligned_cols=158 Identities=21% Similarity=0.252 Sum_probs=114.7
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCC------
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPG------ 723 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG------ 723 (1021)
....+.++|.+++|||||+++|++..... .....|.|........ +..+.+|||||
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------------~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~~ 83 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAF---------------VSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAKV 83 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSC---------------CCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCcccc---------------ccCCCCCccCeEEEEE---CCcEEEEECCCCccccC
Confidence 44678999999999999999999854111 1122344444333222 45688999999
Q ss_pred ----hhhhHHHHHHHhhhC---CEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHh
Q psy5021 724 ----HADYIKNMITGAAQM---DGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIREL 796 (1021)
Q Consensus 724 ----~~~~~~~~~~~~~~a---D~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~ 796 (1021)
++.|...+..+++.+ |++++|+|++.+........+..+...++| +++|+||+|+.+..+ .....+++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~-~~~~~~~~~~~ 161 (195)
T 3pqc_A 84 SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIP-FTIVLTKMDKVKMSE-RAKKLEEHRKV 161 (195)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGG-HHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEEChhcCChHH-HHHHHHHHHHH
Confidence 666666655555554 999999999988877777788888888999 999999999986332 34445566666
Q ss_pred hhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 797 LTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+...+ .++++++||++| .|+++++++|.+.+
T Consensus 162 ~~~~~----~~~~~~~Sa~~~-----------~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 162 FSKYG----EYTIIPTSSVTG-----------EGISELLDLISTLL 192 (195)
T ss_dssp HHSSC----CSCEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred HhhcC----CCceEEEecCCC-----------CCHHHHHHHHHHHh
Confidence 65543 357999999987 38999999987654
No 172
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.60 E-value=2.4e-15 Score=150.68 Aligned_cols=115 Identities=14% Similarity=0.093 Sum_probs=69.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+.+|+++|+.|+|||||+++|......... ....+.......+.+ ++..+.+.+|||||+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~--~~~~~~~~i~D~~g~ 61 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH------------------EMENSEDTYERRIMV--DKEEVTLIVYDIWEQ 61 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------------------------CEEEEEEEE--TTEEEEEEEECCCCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc------------------cCCCcCCeeeEEEEE--CCeEEEEEEEECCCc
Confidence 568999999999999999999632211110 001111111122222 344678999999999
Q ss_pred CCcHH-HHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhh----cCCCEEEEEeCcCCC
Q psy5021 88 VDFTI-EVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ~~f~~-~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~----~~~p~iiviNK~D~~ 142 (1021)
.+|.. ....+++.+|++++|+|+++....... ..+..+.. .++|+++|+||+|+.
T Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 62 GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp --------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred cccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 99876 555668899999999999874322222 22233322 379999999999985
No 173
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.60 E-value=3.7e-15 Score=154.70 Aligned_cols=118 Identities=14% Similarity=0.025 Sum_probs=80.9
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-.-.. ...+... ....+..++..+.+++||||
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~-------------------~~t~~~~--~~~~~~~~~~~~~l~i~Dt~ 86 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY-------------------IPTVFDN--YSANVMVDGKPVNLGLWDTA 86 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-C-------------------CCCSEEE--EEEEEECC-CEEEEEEEEEC
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc-------------------CCeecce--eEEEEEECCEEEEEEEEECC
Confidence 34568999999999999999999753221110 0111111 11122223446778899999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhhc--CCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQKY--KVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~~--~~p~iiviNK~D~~~~ 144 (1021)
|+.+|...+..+++.+|++|+|+|+++....+... .| ..+... ++|+++|+||+|+...
T Consensus 87 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 87 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
T ss_dssp CSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTC
T ss_pred CchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccc
Confidence 99999988889999999999999999865544432 33 333333 8999999999998643
No 174
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.59 E-value=3.2e-15 Score=151.90 Aligned_cols=156 Identities=19% Similarity=0.152 Sum_probs=107.5
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++.... ......|. ....+..++..+.+|||||+++|.
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~~~~ 79 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVV---------------HTSPTIGS----NVEEIVINNTRFLMWDIGGQESLR 79 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCE---------------EEECCSSS----SCEEEEETTEEEEEEEESSSGGGT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCC---------------ccCCcCce----eeEEEEECCEEEEEEECCCCHhHH
Confidence 45678899999999999999999975320 01111222 223455577899999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..+++.+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+... .+ ++.+.+......
T Consensus 80 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~ 153 (181)
T 2h17_A 80 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMT-VA----EISQFLKLTSIK 153 (181)
T ss_dssp CGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HH----HHHHHTTGGGCC
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe-EEEEEECCCcccCCC-HH----HHHHHhCccccc
Confidence 888888999999999999998643 334444444433 4566 999999999975211 12 222222211122
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
...++++++||++| .|+++++++|.+
T Consensus 154 ~~~~~~~~~Sa~~g-----------~gi~~l~~~l~~ 179 (181)
T 2h17_A 154 DHQWHIQACCALTG-----------EGLCQGLEWMMS 179 (181)
T ss_dssp SSCEEEEECBTTTT-----------BTHHHHHHHHHT
T ss_pred CCceEEEEccCCCC-----------cCHHHHHHHHHh
Confidence 23468999999987 389999998875
No 175
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.59 E-value=2.8e-15 Score=154.04 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=105.9
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++.... .+....++.+.....+..++ ..+.||||||+++|
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 88 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFC----------------EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 88 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC------------------------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC----------------cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH
Confidence 3467889999999999999999974311 11122233344444444444 47889999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
...+..+++.+|++|+|+|+++....+. ..++..+... ++| +++|+||+|+.+..... .++...+.+.+.
T Consensus 89 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~~~~~v~---~~~~~~~~~~~~-- 162 (192)
T 2il1_A 89 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREIT---RQQGEKFAQQIT-- 162 (192)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHTST--
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccC---HHHHHHHHHhcC--
Confidence 9999999999999999999998544333 3344444443 566 99999999997532211 122334444331
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
..+++++||++|. |++++++.|.+.
T Consensus 163 --~~~~~~~SA~~g~-----------gi~~l~~~l~~~ 187 (192)
T 2il1_A 163 --GMRFCEASAKDNF-----------NVDEIFLKLVDD 187 (192)
T ss_dssp --TCEEEECBTTTTB-----------SHHHHHHHHHHH
T ss_pred --CCeEEEEeCCCCC-----------CHHHHHHHHHHH
Confidence 3579999999873 888888888653
No 176
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.59 E-value=2.6e-15 Score=167.39 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=77.0
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+|+|++|+|||||+++|+... .. .. ..|+......+.+. ++.++||||||+.
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~--~~------------~~-------~pT~~~~~~~~~~~----~~~l~i~Dt~G~~ 220 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGE--IV------------TT-------IPTIGFNVETVEYK----NISFTVWDVGGQD 220 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSC--CE------------EE-------EEETTEEEEEEEET----TEEEEEEECC---
T ss_pred ceEEEECCCCccHHHHHHHHhCCC--CC------------Cc-------ccccceEEEEEecC----cEEEEEEECCCCH
Confidence 479999999999999999994211 10 00 01444444555665 8899999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHH-HHhh---cCCCEEEEEeCcCCCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWF-QSQK---YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~-~~~~---~~~p~iiviNK~D~~~~ 144 (1021)
+|...+..+++.+|++|+|+|+++...... ...|. .+.. .++|+++|+||+|+...
T Consensus 221 ~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp --CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred hHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 999999999999999999999987543322 22232 3222 38999999999999754
No 177
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.59 E-value=2e-15 Score=153.21 Aligned_cols=117 Identities=18% Similarity=0.102 Sum_probs=73.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-.... .+ |+.... ...+..++..+.+.+||||
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~-------------~~-------t~~~~~-~~~~~~~~~~~~~~i~Dt~ 64 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY-------------VP-------TVFDNF-SANVVVNGATVNLGLWDTA 64 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------------------C-BCCCC-------CEEECCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCC-------------CC-------eeeeeE-EEEEEECCEEEEEEEEECC
Confidence 34568999999999999999999753211000 00 110000 0001112335678899999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhh--cCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQK--YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~--~~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++++|+|+++....+... .| ..+.. .++|+++|+||+|+..
T Consensus 65 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 65 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126 (182)
T ss_dssp C-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred CChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhc
Confidence 99999988899999999999999998754433332 33 33333 3799999999999853
No 178
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.59 E-value=5.6e-15 Score=150.49 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=79.2
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-.... . ..+.......+.+ ++..+.+.|||||
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----~--------------~t~~~~~~~~~~~--~~~~~~~~l~Dt~ 74 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDY-----E--------------PTKADSYRKKVVL--DGEEVQIDILDTA 74 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSC-----C--------------TTCCEEEEEEEEE--TTEEEEEEEEECC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcC-----C--------------CccceEEEEEEEE--CCEEEEEEEEECC
Confidence 35689999999999999999999753311000 0 0011111111222 2335789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-----HHHhhcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-----FQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-----~~~~~~~~p~iiviNK~D~~ 142 (1021)
|+.+|...+..+++.+|++++|+|+++....+....| +.....++|+++|+||+|+.
T Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 75 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp CTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred CCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999999999999875332222222 22223489999999999984
No 179
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.59 E-value=2e-15 Score=156.33 Aligned_cols=118 Identities=19% Similarity=0.194 Sum_probs=78.9
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+..+..+|+++|+.|+|||||+++|+...-.... . .|+.... ...+..++..+.+.|||
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-------------~-------~t~~~~~-~~~~~~~~~~~~~~l~D 78 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY-------------D-------PTVENTY-SKIVTLGKDEFHLHLVD 78 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC-------------C-------CCSEEEE-EEEEC----CEEEEEEE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC-------------C-------CccceEE-EEEEEECCEEEEEEEEE
Confidence 3456789999999999999999999753321110 0 0111111 11122233478899999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh----hcCCCEEEEEeCcCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~----~~~~p~iiviNK~D~~ 142 (1021)
|||+.+|...+..+++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 79 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 79 TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp ECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred CCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 999999998889999999999999999975433333333 3332 2378999999999985
No 180
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.59 E-value=1.5e-14 Score=149.03 Aligned_cols=119 Identities=16% Similarity=0.123 Sum_probs=80.3
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++..+|+++|..|+|||||+++|..... . +...+.+.........+. ++..+.+++|||
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~---~----------------~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt 76 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMS---P----------------NETLFLESTNKIYKDDIS-NSSFVNFQIWDF 76 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCC---G----------------GGGGGCCCCCSCEEEEEC-CTTSCCEEEEEC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCC---C----------------cceeeeccccceeeeecc-CCCeeEEEEEEC
Confidence 45567899999999999999998753111 0 011122222222222222 234688999999
Q ss_pred CCCCCcHHHH---HHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh-----cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTIEV---ERSLRVLDGAVIIICASSGIQPQTETVWFQSQK-----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~~~---~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~-----~~~p~iiviNK~D~~~ 143 (1021)
||+.+|.... ..+++.+|++|+|+|+++........+..++.. .++|+++|+||+|+..
T Consensus 77 ~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 77 PGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp CSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred CCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 9999998777 789999999999999998743333444333332 4899999999999864
No 181
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.59 E-value=5.2e-15 Score=155.09 Aligned_cols=120 Identities=18% Similarity=0.141 Sum_probs=81.7
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc--------cCc
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN--------KFK 76 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~--------~~~ 76 (1021)
.++..+|+++|+.|+|||||+++|+...-... ....+++......+.+... ...
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPK------------------FITTVGIDFREKRVVYNAQGPNGSSGKAFK 83 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCE------------------EEEEEEEEEEEEEEEEEC-------CCEEE
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcC------------------CCCceeEEEEEEEEEECCccccccccCcee
Confidence 45678999999999999999999973211000 0011111111222333311 015
Q ss_pred eeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-Hhh----cCCCEEEEEeCcCCC
Q psy5021 77 YMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-SQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 77 ~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~~~----~~~p~iiviNK~D~~ 142 (1021)
+.++||||||+.+|...+..+++.+|++|+|+|+++....+....|.. +.. .++|+++|+||+|+.
T Consensus 84 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp EEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred EEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 789999999999999999999999999999999988654444333332 222 578999999999985
No 182
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.59 E-value=6.2e-15 Score=152.94 Aligned_cols=117 Identities=16% Similarity=0.171 Sum_probs=80.6
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..+..+|+++|+.|+|||||+++|+...-.... . +.+.......+.+ ++..+.+.||||
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------~------~t~~~~~~~~~~~--~~~~~~~~l~Dt 69 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY-------------E------PTKADSYRKKVVL--DGEEVQIDILDT 69 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTC-------------C------TTCCEEEEEEEEE--TTEEEEEEEEEC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCC-------------C------CccceEEEEEEEE--CCEEEEEEEEcC
Confidence 345689999999999999999999753311000 0 0011111112222 233568999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH----hhcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~----~~~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++++|+|+++.........| ..+ ...++|+++|+||+|+.
T Consensus 70 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 70 AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp CCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred CChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 99999999999999999999999999875433332222 222 23489999999999985
No 183
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.59 E-value=6.1e-15 Score=151.47 Aligned_cols=172 Identities=18% Similarity=0.113 Sum_probs=109.1
Q ss_pred EEcchhhhccCCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe
Q psy5021 635 SYIPLRELFGYSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714 (1021)
Q Consensus 635 a~~P~~e~~~~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~ 714 (1021)
++.+...++.-....+.+.+.++|.+++|||||+++|++.... ...+ |+......++..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~---------------~~~~----t~~~~~~~~~~~~~ 73 (192)
T 2b6h_A 13 GLVPRGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV---------------TTIP----TIGFNVETVEYKNI 73 (192)
T ss_dssp ----CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCE---------------EEEE----ETTEEEEEEEETTE
T ss_pred ccchHHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCcc---------------ccCC----cCceeEEEEEECCE
Confidence 4444444444333456788999999999999999999864311 0111 22233445666788
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLV 789 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~ 789 (1021)
.+.+|||||+++|...+..+++.+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+... .+++
T Consensus 74 ~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~~i 151 (192)
T 2b6h_A 74 CFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV-LLVFANKQDMPNAMP-VSEL 151 (192)
T ss_dssp EEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HHHH
T ss_pred EEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCe-EEEEEECCCCCCCCC-HHHH
Confidence 99999999999998888889999999999999987643 233344433332 2566 999999999976321 1222
Q ss_pred HHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 790 EMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 790 ~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+ .+.........++++++||++| .|+++++++|.+.+
T Consensus 152 ~~----~~~~~~~~~~~~~~~~~SA~~g-----------~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 152 TD----KLGLQHLRSRTWYVQATCATQG-----------TGLYDGLDWLSHEL 189 (192)
T ss_dssp HH----HTTGGGCSSCCEEEEECBTTTT-----------BTHHHHHHHHHHHT
T ss_pred HH----HhCcccccCCceEEEECcCCCc-----------CCHHHHHHHHHHHH
Confidence 22 2211112223468999999987 38999999987654
No 184
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.59 E-value=8.3e-15 Score=145.91 Aligned_cols=154 Identities=19% Similarity=0.120 Sum_probs=105.2
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHH
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNMI 732 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 732 (1021)
.+.++|.+++|||||+++|++.... . ..+ |+......++..+..+.+|||||+++|...+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~------------~---~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 62 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV------------T---TIP----TIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 62 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS------------C---CCC----CSSCCEEEEECSSCEEEEEECCCCGGGHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC------------c---ccC----cCceeEEEEEECCEEEEEEEcCCChhhHHHHH
Confidence 4678899999999999999874311 0 011 22233344566778999999999999999888
Q ss_pred HHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCce
Q psy5021 733 TGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENT 807 (1021)
Q Consensus 733 ~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 807 (1021)
.+++.+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+... .+.+..+ +.........+
T Consensus 63 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~~~~~~----~~~~~~~~~~~ 136 (164)
T 1r8s_A 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAMN-AAEITDK----LGLHSLRHRNW 136 (164)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HHHHHHH----TTGGGCSSCCE
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe-EEEEEECcCCcCCCC-HHHHHHH----hCcccccCccE
Confidence 99999999999999987543 223334433332 2566 999999999976321 1222222 21111122346
Q ss_pred EEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 808 KIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 808 ~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+++++||++| .|+++++++|.+.+
T Consensus 137 ~~~~~Sa~~~-----------~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 137 YIQATCATSG-----------DGLYEGLDWLSNQL 160 (164)
T ss_dssp EEEECBTTTT-----------BTHHHHHHHHHHHC
T ss_pred EEEEcccCCC-----------cCHHHHHHHHHHHH
Confidence 8999999987 38999999987755
No 185
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.59 E-value=1.3e-15 Score=159.94 Aligned_cols=118 Identities=20% Similarity=0.169 Sum_probs=80.4
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEEc
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINIID 83 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~liD 83 (1021)
.+...+|+++|+.|+|||||+++|+...-. . ....|+........+.. ++..+.+++||
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~------------------~~~~t~~~~~~~~~~~~~~~~~~~~~l~D 67 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFE--K------------------NYNATVGAVNHPVTFLDDQGNVIKFNVWD 67 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTT--C------------------EEETTTTEEEEEEEEEBTTSCEEEEEEEE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCC--C------------------CCCCccceeeEEEEEEeCCCcEEEEEEEe
Confidence 345679999999999999999998532110 0 00011111222222222 22237899999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH---hhcCCCEEEEEeCcCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS---QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~---~~~~~p~iiviNK~D~~ 142 (1021)
|||+.+|.......++.+|++|+|+|++++...+....| ..+ ...++|+++|+||+|+.
T Consensus 68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 68 TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp ECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred cCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 999999988888999999999999999987554444333 222 33479999999999985
No 186
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.59 E-value=2.4e-15 Score=150.18 Aligned_cols=114 Identities=13% Similarity=0.063 Sum_probs=62.8
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.-+|+++|++|+|||||+++|...... ......|.|... .+..++..+.+.+|||||+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-----------------~~~~~~~~~~~~-----~~~~~~~~~~~~i~D~~g~ 59 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-----------------PEAEAAGHTYDR-----SIVVDGEEASLMVYDIWEQ 59 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC---------------------------CEEEE-----EEEETTEEEEEEEEECC--
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-----------------CCCCccccceEE-----EEEECCEEEEEEEEECCCC
Confidence 347999999999999999999421110 000112233321 1122344678999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhh----cCCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQK----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~----~~~p~iiviNK~D~~~ 143 (1021)
.+|......+++.+|++++|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp -------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred ccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 99999999999999999999999875332222 23333333 4799999999999863
No 187
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.59 E-value=1.2e-15 Score=160.39 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=84.5
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
......+|+++|+.|+|||||+++|+...-... + ....|.|.......+. +..+.+++||
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~----------~------~~t~~~~~~~~~~~~~----~~~~~~~i~D 70 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKK----------Y------VATLGVEVHPLVFHTN----RGPIKFNVWD 70 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCE----------E------ETTTTEEEEEEEEEET----TEEEEEEEEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCC----------C------CCccceeEEEEEEEEC----CEEEEEEEEe
Confidence 344567899999999999999999653221100 0 0122344443333332 3378899999
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-Hhh--cCCCEEEEEeCcCCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-SQK--YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~~~--~~~p~iiviNK~D~~~ 143 (1021)
|||+.+|...+..+++.+|++|+|+|+++....+....|.. +.. .++|+++|+||+|+..
T Consensus 71 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 71 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133 (221)
T ss_dssp ECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS
T ss_pred CCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc
Confidence 99999999889999999999999999998654444444432 222 3899999999999864
No 188
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=156.90 Aligned_cols=162 Identities=17% Similarity=0.128 Sum_probs=105.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++... ........|.+.......+......+.||||||+++|..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 92 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEF--------------RENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRS 92 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCC--------------C----------CEEEEEEETTEEEEEEEEECTTCTTCHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCC--------------CccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhh
Confidence 457889999999999999999997431 111222334444444444443345689999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhh---HHHHHHHHHHHhhhcccc
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKE---LLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~---~~~~~~~~~~~~l~~~~~ 802 (1021)
.+..+++.+|++|+|+|++++...+. ..++..+... ++| +++|+||+|+.+... ......++...+.+..+
T Consensus 93 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~- 170 (199)
T 2p5s_A 93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG- 170 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-
T ss_pred hHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccccccccccCHHHHHHHHHHcC-
Confidence 99999999999999999987544332 3344444433 677 999999999864210 00001123334444443
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| .|+++++++|.+.+
T Consensus 171 ----~~~~~~SA~~g-----------~gv~el~~~l~~~i 195 (199)
T 2p5s_A 171 ----ALFCETSAKDG-----------SNIVEAVLHLAREV 195 (199)
T ss_dssp ----CEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred ----CeEEEeeCCCC-----------CCHHHHHHHHHHHH
Confidence 57999999987 38889998887644
No 189
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.59 E-value=1.1e-15 Score=174.52 Aligned_cols=155 Identities=21% Similarity=0.263 Sum_probs=115.5
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe-EEEEEecCChhhh--
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK-HYAHVDCPGHADY-- 727 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~-~i~liDtpG~~~~-- 727 (1021)
...++++|++++|||||+|+|++... ...+...|+|++.....++..+. .+.|||||||.+|
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~---------------~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~ 98 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNV---------------SIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGE 98 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEETTTEEEEEEECSSTTCCCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCC---------------CccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccc
Confidence 46789999999999999999997431 12345568888888888887765 8999999999876
Q ss_pred -----HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 728 -----IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 728 -----~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
...+..++..+|++|+|+|+ +...++.+++..+...++| +|+|+||+|+...... +...++.+.++
T Consensus 99 l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~p-iIvV~NK~Dl~~~~~~-----~~~~~l~~~~g- 169 (423)
T 3qq5_A 99 LGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIP-FVVVVNKIDVLGEKAE-----ELKGLYESRYE- 169 (423)
T ss_dssp TCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCC-EEEECCCCTTTTCCCT-----HHHHHSSCCTT-
T ss_pred hhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCC-EEEEEeCcCCCCccHH-----HHHHHHHHHcC-
Confidence 34567788999999999998 6788999999999999999 9999999999863321 22333444444
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPT 844 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~ 844 (1021)
++++++||++|. +++++++.|.+.++.
T Consensus 170 ----~~v~~vSAktg~-----------gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 170 ----AKVLLVSALQKK-----------GFDDIGKTISEILPG 196 (423)
T ss_dssp ----CCCCCCSSCCTT-----------STTTHHHHHHHHSCC
T ss_pred ----CCEEEEECCCCC-----------CHHHHHHHHHHhhhh
Confidence 478999999873 778888888877643
No 190
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=1.8e-14 Score=148.43 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=79.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
....+|+++|+.|+|||||+++|+...-.... ..|+...... .+..++..+.+.+||||
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------------~~t~~~~~~~-~~~~~~~~~~~~l~Dt~ 64 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTY--------------------IPTIEDTYRQ-VISCDKSVCTLQITDTT 64 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTT--------------------SCCCCEEEEE-EEEETTEEEEEEEEECC
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcc--------------------cCccccceeE-EEEECCEEEEEEEEeCC
Confidence 44578999999999999999999752211000 0011111111 11122336789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHHHhh-----cCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQSQK-----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~~~~-----~~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++|+|+|+++...... ...|..+.. .++|+++|+||+|+..
T Consensus 65 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 65 GSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp GGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred ChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 999999999999999999999999987432222 223333322 3789999999999863
No 191
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.59 E-value=2.6e-15 Score=152.92 Aligned_cols=163 Identities=17% Similarity=0.088 Sum_probs=107.3
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~ 726 (1021)
++.+.+.++|.+++|||||+++|++..... ......+.+. ...+..++ ..+.+|||||+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~--------------~~~~t~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~ 65 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPG--------------EYIPTVFDNY---SANVMVDGKPVNLGLWDTAGQED 65 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCS--------------SCCCCSCCEE---EEEEEETTEEEEEEEECCCCSGG
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCC--------------CcCCccccee---EEEEEECCEEEEEEEEECCCCHh
Confidence 456778999999999999999998643110 0001111111 12233334 4567999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HHHH
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EMEI 793 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~ 793 (1021)
|...+..+++.+|++++|+|++++...+.. .++..+... ++| +++|+||+|+.+.....+.+ ..+.
T Consensus 66 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 144 (186)
T 1mh1_A 66 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 144 (186)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred HHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCC-EEEEeEcccccccchhhhhhcccccccCCHHHH
Confidence 988877888999999999999875433332 344444444 777 99999999997632222111 1223
Q ss_pred HHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCC
Q psy5021 794 RELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPT 844 (1021)
Q Consensus 794 ~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~ 844 (1021)
..+.+..++ .+++++||++| .|++++++.|.+.+..
T Consensus 145 ~~~~~~~~~----~~~~~~Sa~~g-----------~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 145 LAMAKEIGA----VKYLECSALTQ-----------RGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHTTC----SEEEECCTTTC-----------TTHHHHHHHHHHHHSC
T ss_pred HHHHHhcCC----cEEEEecCCCc-----------cCHHHHHHHHHHHHhc
Confidence 334444432 37999999987 3899999998876543
No 192
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.8e-15 Score=159.48 Aligned_cols=118 Identities=19% Similarity=0.138 Sum_probs=79.9
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+...+|+++|+.|+|||||+++|+........ ...++.......+.+. +..+.+.||||
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~--~~~~~~~i~Dt 69 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS------------------KSTIGVEFATRTLEIE--GKRIKAQIWDT 69 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------------------------CCSEEEEEEEET--TEEEEEEEECC
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCC------------------CCcccceeEEEEEEEC--CEEEEEEEEEC
Confidence 356789999999999999999999753221110 1112222222223332 33478999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 70 ~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 70 AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp TTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred CCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99999998888999999999999999986544443333 33332 378999999999985
No 193
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.59 E-value=4.6e-15 Score=153.00 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=110.1
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY 727 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~ 727 (1021)
......+.++|.+++|||||+++|++...... ....+.| .....++..+..+.||||||+++|
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~-------------~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~ 76 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK-------------HITATVG----YNVETFEKGRVAFTVFDMGGAKKF 76 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC-----------------CCCCCSS----EEEEEEEETTEEEEEEEECCSGGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCccc-------------ccccccc----eeEEEEEeCCEEEEEEECCCCHhH
Confidence 34557788999999999999999998542110 0111223 333445677889999999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc-----------CCCeEEEEEeeccccchhhHHHHHHHHHH-
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV-----------GVPNIVVFLNKADCVQDKELLDLVEMEIR- 794 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~-----------~ip~iIvviNK~Dl~~~~~~~~~~~~~~~- 794 (1021)
...+..+++.+|++|+|+|+++... ....+++..+... ++| +|+|+||+|+.+... .+++.+.+.
T Consensus 77 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~~~~~~~~~ 154 (199)
T 4bas_A 77 RGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP-FLFFANKMDAAGAKT-AAELVEILDL 154 (199)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEEEEECTTSTTCCC-HHHHHHHHTH
T ss_pred HHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC-EEEEEECcCCCCCCC-HHHHHHHhcc
Confidence 9888888999999999999998653 3344455444433 778 999999999986321 222222221
Q ss_pred -HhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 795 -ELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 795 -~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+.+. ..++++++||++| .|+++++++|.+.+
T Consensus 155 ~~~~~~-----~~~~~~~~Sa~~g-----------~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 155 TTLMGD-----HPFVIFASNGLKG-----------TGVHEGFSWLQETA 187 (199)
T ss_dssp HHHHTT-----SCEEEEECBTTTT-----------BTHHHHHHHHHHHH
T ss_pred hhhccC-----CeeEEEEeeCCCc-----------cCHHHHHHHHHHHH
Confidence 11122 2468999999987 38889998887654
No 194
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.59 E-value=2.4e-15 Score=156.97 Aligned_cols=163 Identities=19% Similarity=0.167 Sum_probs=106.9
Q ss_pred CCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecC
Q psy5021 645 YSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCP 722 (1021)
Q Consensus 645 ~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtp 722 (1021)
+...++.+-+-++|..++|||||+++++... +......+.|. +.....+..++ ..+.||||+
T Consensus 7 ~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~--------------f~~~~~~Tig~--d~~~k~~~~~~~~v~l~iwDta 70 (216)
T 4dkx_A 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDS--------------FDNTYQATIGI--DFLSKTMYLEDRTIRLQLWDTA 70 (216)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSC--------------CC------------CEEEEEECSSCEEEEEEECCS
T ss_pred CCCCCCcEEEEEECcCCcCHHHHHHHHHhCC--------------CCCCcCCccce--EEEEEEEEecceEEEEEEEECC
Confidence 4455677888899999999999999999743 11112223333 33333333443 567799999
Q ss_pred ChhhhHHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 723 GHADYIKNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 723 G~~~~~~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
|+++|...+..+++.+|++++|+|.++... .....++..+... ++| +|+|.||+|+.+.... ..++..++.+
T Consensus 71 Gqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~~r~V---~~~e~~~~a~ 146 (216)
T 4dkx_A 71 GLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKTDLADKRQV---SIEEGERKAK 146 (216)
T ss_dssp CTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECTTCGGGCCS---CHHHHHHHHH
T ss_pred CchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCe-EEEEeeccchHhcCcc---cHHHHhhHHH
Confidence 999999999999999999999999987443 2334455444432 466 9999999998753211 1133445555
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.++ ++++.+||++|. |++++++.|.+.++
T Consensus 147 ~~~-----~~~~e~SAktg~-----------nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 147 ELN-----VMFIETSAKAGY-----------NVKQLFRRVAAALP 175 (216)
T ss_dssp HHT-----CEEEEEBTTTTB-----------SHHHHHHHHHHHC-
T ss_pred HhC-----CeeEEEeCCCCc-----------CHHHHHHHHHHHHH
Confidence 555 579999999884 89999999887664
No 195
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.59 E-value=1.2e-15 Score=165.74 Aligned_cols=154 Identities=19% Similarity=0.176 Sum_probs=112.1
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+...++++|++|+|||||+|+|++... ......|+|++.....+.+.+..+.+|||||+.+|..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ----------------HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTA 65 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE----------------EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc----------------ccCCCCCeEEEeeEEEEEECCceEEEEeCCCcccccc
Confidence 457889999999999999999998432 1223457788888888888899999999999988754
Q ss_pred ------HHHHHh--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcC-CCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 730 ------NMITGA--AQMDGAILVCSAVDGPMPQTREHILLARQVG-VPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 730 ------~~~~~~--~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~-ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
.+..++ ..+|++++|+|++++ .+....+..+...+ +| +++|+||+|+.+.... . .....+.+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~-~---~~~~~l~~~l 138 (271)
T 3k53_A 66 HSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKN-IILVLNKFDLLKKKGA-K---IDIKKMRKEL 138 (271)
T ss_dssp SCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCS-EEEEEECHHHHHHHTC-C---CCHHHHHHHH
T ss_pred CCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCC-EEEEEEChhcCccccc-H---HHHHHHHHHc
Confidence 333344 579999999999873 34555566666777 78 9999999998652111 0 1122233334
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+ ++++++||++|. |++++++.+.+.+
T Consensus 139 g-----~~~~~~Sa~~g~-----------gi~~l~~~i~~~~ 164 (271)
T 3k53_A 139 G-----VPVIPTNAKKGE-----------GVEELKRMIALMA 164 (271)
T ss_dssp S-----SCEEECBGGGTB-----------THHHHHHHHHHHH
T ss_pred C-----CcEEEEEeCCCC-----------CHHHHHHHHHHHH
Confidence 4 479999999873 7888888887643
No 196
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.58 E-value=3.5e-15 Score=154.84 Aligned_cols=162 Identities=18% Similarity=0.102 Sum_probs=107.8
Q ss_pred cccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCCh
Q psy5021 647 TDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGH 724 (1021)
Q Consensus 647 ~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~ 724 (1021)
...+.+.+.++|.+++|||||+++|++..... ...+.+.+.....+..++. .+.||||||+
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 88 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPG-----------------EYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 88 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC------------------CCCCSEEEEEEEEECC-CEEEEEEEEECCS
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCC-----------------CcCCeecceeEEEEEECCEEEEEEEEECCCc
Confidence 34566889999999999999999999643110 0111222233333444444 4559999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HH
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EM 791 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~ 791 (1021)
++|...+..+++.+|++++|+|+++....+.. .++..+... ++| +++|+||+|+.+.....+.. ..
T Consensus 89 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 167 (204)
T 4gzl_A 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYP 167 (204)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHH
T ss_pred hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhccchhhhhhhhccccccccHH
Confidence 99988888889999999999999985543332 344455554 778 99999999997643222211 12
Q ss_pred HHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 792 EIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 792 ~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+...+.+.++. .+++++||++| .|+++++++|.+.
T Consensus 168 ~~~~~~~~~~~----~~~~~~SA~~g-----------~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 168 QGLAMAKEIGA----VKYLECSALTQ-----------RGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHHTTC----SEEEECCTTTC-----------TTHHHHHHHHHHT
T ss_pred HHHHHHHhcCC----cEEEEeeCCCC-----------CCHHHHHHHHHHH
Confidence 33444555543 46999999987 3899999988763
No 197
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.58 E-value=1.2e-15 Score=164.08 Aligned_cols=154 Identities=17% Similarity=0.170 Sum_probs=112.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.++++|.+|+|||||+|+|++.... .....|+|++.....+...+..+.||||||+.+|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~----------------~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~ 67 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY----------------VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGY 67 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE----------------EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc----------------ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCC
Confidence 4578899999999999999999974322 122348888888888888889999999999987743
Q ss_pred ------HHHHHh--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 730 ------NMITGA--AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 730 ------~~~~~~--~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
....++ ..+|++++|+|+++. .....++..+...++| +++|+||+|+...... ..+...+.+.++
T Consensus 68 ~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~p-vilv~NK~Dl~~~~~i----~~~~~~l~~~lg 140 (258)
T 3a1s_A 68 SSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKK-VILAMTAIDEAKKTGM----KIDRYELQKHLG 140 (258)
T ss_dssp SSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCC-EEEEEECHHHHHHTTC----CBCHHHHHHHHC
T ss_pred CCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCC-EEEEEECcCCCCccch----HHHHHHHHHHcC
Confidence 223333 479999999999873 2334455666667899 9999999998642111 112233344444
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| .|+++|++.|.+..
T Consensus 141 -----~~vi~~SA~~g-----------~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 141 -----IPVVFTSSVTG-----------EGLEELKEKIVEYA 165 (258)
T ss_dssp -----SCEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred -----CCEEEEEeeCC-----------cCHHHHHHHHHHHh
Confidence 47999999987 38889999887644
No 198
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.58 E-value=1.8e-14 Score=146.42 Aligned_cols=158 Identities=19% Similarity=0.138 Sum_probs=108.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++.... ....+.|.+ ...+..++..+.+|||||+++|..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~---------------~~~~t~g~~----~~~~~~~~~~l~i~Dt~G~~~~~~ 75 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDIS---------------HITPTQGFN----IKSVQSQGFKLNVWDIGGQRKIRP 75 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCE---------------EEEEETTEE----EEEEEETTEEEEEEECSSCGGGHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC---------------cccCcCCeE----EEEEEECCEEEEEEECCCCHHHHH
Confidence 4578899999999999999999974211 111222322 234455688999999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..+++.+|++++|+|+++.... ...+++..+.. .++| +++|+||+|+.+... .+ ++.+.+.......
T Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~~~~~~~~~~~~~ 149 (181)
T 1fzq_A 76 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDLLTAAP-AS----EIAEGLNLHTIRD 149 (181)
T ss_dssp HHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTCCC-HH----HHHHHTTGGGCCS
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCcccCCC-HH----HHHHHhCchhccC
Confidence 999999999999999999875432 23334433322 3577 999999999976321 12 2222222111122
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
..++++++||++| .|+++++++|.+.+.
T Consensus 150 ~~~~~~~~Sa~~g-----------~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 150 RVWQIQSCSALTG-----------EGVQDGMNWVCKNVN 177 (181)
T ss_dssp SCEEEEECCTTTC-----------TTHHHHHHHHHHTC-
T ss_pred CceEEEEccCCCC-----------CCHHHHHHHHHHHHH
Confidence 3468999999987 389999999987653
No 199
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.58 E-value=4.1e-15 Score=152.96 Aligned_cols=156 Identities=15% Similarity=0.095 Sum_probs=109.2
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++... ..+...+++.+.....+..++ ..+.||||||+++|.
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 79 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTY----------------TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 79 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC----------------CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCC----------------CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh
Confidence 46789999999999999999997431 112223445555555555555 568899999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++|+|+|+++.... ....++..+... ++| +++|+||+|+.+...... .+...+.+.++
T Consensus 80 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~--- 152 (196)
T 3tkl_A 80 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVVDY---TTAKEFADSLG--- 152 (196)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSCH---HHHHHHHHHTT---
T ss_pred hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccccCH---HHHHHHHHHcC---
Confidence 9999999999999999999874432 223444444443 566 899999999975322111 22334444444
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |+++++++|.+.+
T Consensus 153 --~~~~~~Sa~~g~-----------gv~~l~~~l~~~i 177 (196)
T 3tkl_A 153 --IPFLETSAKNAT-----------NVEQSFMTMAAEI 177 (196)
T ss_dssp --CCEEEECTTTCT-----------THHHHHHHHHHHH
T ss_pred --CcEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 479999999873 8888888776644
No 200
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.58 E-value=5.8e-15 Score=150.57 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=108.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++.. ... ... |+......+..++..+.+|||||+++|..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~-------------~~~----t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 77 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDT-------------ISP----TLGFNIKTLEHRGFKLNIWDVGGQKSLRS 77 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSS-------------CCC----CSSEEEEEEEETTEEEEEEEECCSHHHHT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCc-------------ccc----cCccceEEEEECCEEEEEEECCCCHhHHH
Confidence 45788999999999999999999743 100 011 22223334555788999999999999998
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..+++.+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+... .+ ++.+.+.......
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~ 151 (186)
T 1ksh_A 78 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQDLPGALS-CN----AIQEALELDSIRS 151 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HH----HHHHHTTGGGCCS
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCc-EEEEEeCccCCCCCC-HH----HHHHHhChhhccC
Confidence 88888999999999999988653 333344444333 2566 999999999976321 22 2222222111222
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..++++++||++| .|+++++++|.+.+
T Consensus 152 ~~~~~~~~Sa~~~-----------~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 152 HHWRIQGCSAVTG-----------EDLLPGIDWLLDDI 178 (186)
T ss_dssp SCEEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred CceEEEEeeCCCC-----------CCHHHHHHHHHHHH
Confidence 3568999999987 38899999887654
No 201
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=2.4e-15 Score=154.26 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=111.9
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+.++|.+++|||||+++|++.... .......|.+.......+......+.||||||+++|...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 88 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFT--------------PAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTI 88 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTC--------------CCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCC--------------cccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHH
Confidence 467889999999999999999974311 111223355555555556666778999999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
+..+++.+|++|+|+|+++... ....+++..+.. .++| +++|+||+|+.+...... .+...+.+..+
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~~----- 159 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ-VILVGNKCDMEEERVVPT---EKGQLLAEQLG----- 159 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCH---HHHHHHHHHHT-----
T ss_pred HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccCH---HHHHHHHHHcC-----
Confidence 9999999999999999987433 223444555555 3566 999999999865321111 23333444444
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |++++++.|.+.+
T Consensus 160 ~~~~~~Sa~~~~-----------gi~~l~~~l~~~i 184 (191)
T 3dz8_A 160 FDFFEASAKENI-----------SVRQAFERLVDAI 184 (191)
T ss_dssp CEEEECBTTTTB-----------SHHHHHHHHHHHH
T ss_pred CeEEEEECCCCC-----------CHHHHHHHHHHHH
Confidence 479999999873 8888888876543
No 202
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.58 E-value=5.1e-15 Score=147.57 Aligned_cols=155 Identities=20% Similarity=0.150 Sum_probs=103.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++..... ......+ +.....+..++ ..+.+|||||+++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~---~~~~~~~~~~~~~~~~~l~D~~G~~~~ 64 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIE--------------KYDPTIE---DFYRKEIEVDSSPSVLEILDTAGTEQF 64 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS--------------CCCTTCC---EEEEEEEEETTEEEEEEEEECCCTTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcc--------------cCCCCcc---eeEEEEEEECCEEEEEEEEECCCchhh
Confidence 45678999999999999999999743110 0011111 11122333444 45889999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
...+..+++.+|++++|+|+++....+ ...++..+.. .++| +++|+||+|+.+..+.. ..+...+.+..+
T Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 139 (167)
T 1kao_A 65 ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESEREVS---SSEGRALAEEWG- 139 (167)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGCCSC---HHHHHHHHHHHT-
T ss_pred HHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcccccccCC---HHHHHHHHHHhC-
Confidence 999999999999999999998743322 2333333332 3677 99999999987532211 122333444444
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||++| .|+++++++|.+.
T Consensus 140 ----~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 163 (167)
T 1kao_A 140 ----CPFMETSAKSK-----------TMVDELFAEIVRQ 163 (167)
T ss_dssp ----SCEEEECTTCH-----------HHHHHHHHHHHHH
T ss_pred ----CCEEEecCCCC-----------cCHHHHHHHHHHH
Confidence 46899999987 4889999888653
No 203
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=157.27 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=79.2
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++..+|+++|+.|+|||||+++|+...... +....++.......+.+ ++..+.+.||||
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~------------------~~~~t~~~~~~~~~~~~--~~~~~~l~l~Dt 81 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQ------------------DSNHTIGVEFGSRVVNV--GGKTVKLQIWDT 81 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------------------------CCEEEEEEEE--TTEEEEEEEECC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCc------------------cCCCcccceeEEEEEEE--CCeeeEEEEEcC
Confidence 4567899999999999999999997322110 01111222222222222 233578999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 82 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 82 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp TTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred CCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 99988888888999999999999999976443333333 2232 3479999999999984
No 204
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.58 E-value=1.5e-14 Score=147.98 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=68.7
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-.+|+++|+.|+|||||+++|+........ . +.+.......+.+ ++..+.+.+|||||+
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----~--------------~t~~~~~~~~~~~--~~~~~~~~l~Dt~G~ 79 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEY-----D--------------PTIEDSYRKQVVI--DGETCLLDILDTAGQ 79 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSCC-----C--------------TTCCEEEEEEEEE--TTEEEEEEEEECCC-
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCcccc-----C--------------CccceEEEEEEEE--CCEEEEEEEEECCCh
Confidence 358999999999999999999753211000 0 0010111112222 233577999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh----hcCCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~----~~~~p~iiviNK~D~~~ 143 (1021)
.+|...+..+++.+|++++|+|+++.........| ..+. ..++|+++|+||+|+..
T Consensus 80 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 80 EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp ----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 99999999999999999999999876443333333 2222 24799999999999863
No 205
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.58 E-value=1.8e-15 Score=153.89 Aligned_cols=156 Identities=17% Similarity=0.119 Sum_probs=83.0
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++... ..+...+++.+.....+..++ ..+.||||||+++|.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 71 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAF----------------NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 71 (183)
T ss_dssp EEEEEEECCCCC--------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC----------------CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhh
Confidence 46788999999999999999986421 111222334444444455555 678999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++|+|+|+++... ....+++..+... ++| +++|+||+|+.+..... .++...+++..+
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~--- 144 (183)
T 2fu5_C 72 TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE-KMILGNKCDVNDKRQVS---KERGEKLALDYG--- 144 (183)
T ss_dssp --CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEEC--CCSCCCSC---HHHHHHHHHHHT---
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccCCccCcCC---HHHHHHHHHHcC---
Confidence 888888899999999999987433 2333444445443 566 89999999997522110 123334444444
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |++++++.|.+.+
T Consensus 145 --~~~~~~Sa~~~~-----------~i~~l~~~l~~~i 169 (183)
T 2fu5_C 145 --IKFMETSAKANI-----------NVENAFFTLARDI 169 (183)
T ss_dssp --CEEEECCC---C-----------CHHHHHHHHHHHH
T ss_pred --CeEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 479999999873 7888888876543
No 206
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.58 E-value=3.5e-15 Score=154.62 Aligned_cols=156 Identities=15% Similarity=0.099 Sum_probs=105.5
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+.++|.+++|||||+++|++.... .......|.+.......+......+.||||||+++|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 73 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFT--------------PAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTI 73 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--------------SCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC--------------CCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcch
Confidence 367889999999999999999974311 111122344444444444333467899999999999999
Q ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
+..+++.+|++|+|+|++++...+ ...++..+... ++| +++|+||+|+.+..... ..+...+.+.++
T Consensus 74 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~----- 144 (203)
T 1zbd_A 74 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDERVVS---SERGRQLADHLG----- 144 (203)
T ss_dssp HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSCCSC---HHHHHHHHHHHT-----
T ss_pred HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCcccccC---HHHHHHHHHHCC-----
Confidence 999999999999999998754322 23444444442 566 99999999997532111 123334444444
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
++++++||++|. |+++++++|.+
T Consensus 145 ~~~~~~Sa~~~~-----------gi~~l~~~l~~ 167 (203)
T 1zbd_A 145 FEFFEASAKDNI-----------NVKQTFERLVD 167 (203)
T ss_dssp CEEEECBTTTTB-----------SSHHHHHHHHH
T ss_pred CeEEEEECCCCC-----------CHHHHHHHHHH
Confidence 479999999873 66666666654
No 207
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.57 E-value=5.3e-15 Score=151.08 Aligned_cols=112 Identities=19% Similarity=0.161 Sum_probs=82.0
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..+|+++|+.|+|||||+++|..... . .+...++|+......+.+. ++.+++|||||
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~---~---------------~~~~~~~t~~~~~~~~~~~----~~~~~l~Dt~G 63 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENV---Y---------------IGNWPGVTVEKKEGEFEYN----GEKFKVVDLPG 63 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCE---E---------------EEECTTSCCEEEEEEEEET----TEEEEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc---c---------------ccCCCCeeccceEEEEEeC----CcEEEEEECCC
Confidence 457899999999999999999963210 0 0112356666666666676 78999999999
Q ss_pred CCCcH------HHHHHHhh--ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFT------IEVERSLR--VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~------~~~~~~l~--~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+.+|. .....+++ .+|++++|+|++. .......+..+...+.|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 64 VYSLTANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLA 125 (188)
T ss_dssp CSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred cCccccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhcc
Confidence 99884 23344444 4999999999975 2334445566677899999999999973
No 208
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.57 E-value=2.8e-15 Score=149.87 Aligned_cols=155 Identities=14% Similarity=0.116 Sum_probs=103.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++..... ......|. +.....+..++ ..+.+|||||+++|.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--------------~~~~t~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 68 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTK--------------DYKKTIGV--DFLERQIQVNDEDVRLMLWDTAGQEEFD 68 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCC--------------CSSCCCSS--SEEEEEEEETTEEEEEEEECCTTGGGTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCceEE--EEEEEEEEECCEEEEEEEEcCCCcHhHH
Confidence 4567889999999999999999743110 11111222 23333344443 478899999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH--cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ--VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~--~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
..+..+++.+|++++|+|+++... .....++..+.. .+.| +++|+||+|+.+..... .+++..+++..+
T Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 140 (168)
T 1z2a_A 69 AITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDSCIK---NEEAEGLAKRLK---- 140 (168)
T ss_dssp CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGCSSC---HHHHHHHHHHHT----
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccCcccccC---HHHHHHHHHHcC----
Confidence 888888999999999999987442 222333333333 2677 99999999987532111 123344444444
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||+++. |+++++++|.+.
T Consensus 141 -~~~~~~Sa~~~~-----------~i~~l~~~l~~~ 164 (168)
T 1z2a_A 141 -LRFYRTSVKEDL-----------NVSEVFKYLAEK 164 (168)
T ss_dssp -CEEEECBTTTTB-----------SSHHHHHHHHHH
T ss_pred -CeEEEEecCCCC-----------CHHHHHHHHHHH
Confidence 479999999873 788888887653
No 209
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.57 E-value=1.5e-14 Score=154.68 Aligned_cols=122 Identities=18% Similarity=0.207 Sum_probs=90.7
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
.-.+|+++|++|+|||||+++|+.....+... ...|.|.......+.+. +..+++|||||
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~----------------~~~~~T~~~~~~~~~~~----~~~i~liDTPG 79 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRL----------------GATSVTRACTTGSRRWD----KCHVEVVDTPD 79 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC-------------------------CCSCEEEEEEET----TEEEEEEECCS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccC----------------CCCCccccEEEEEEEEC----CcEEEEEECCC
Confidence 45789999999999999999998544332210 11245655555666777 88999999999
Q ss_pred C--------CCcHHHHHHHh----hccCeEEEEEeCCCCCchhHHHHHHHHhhc------CCCEEEEEeCcCCCCCCHHH
Q psy5021 87 H--------VDFTIEVERSL----RVLDGAVIIICASSGIQPQTETVWFQSQKY------KVPKMIFVNKMDRIGANYNN 148 (1021)
Q Consensus 87 ~--------~~f~~~~~~~l----~~~D~~ilvvda~~g~~~~t~~~~~~~~~~------~~p~iiviNK~D~~~~~~~~ 148 (1021)
. .+|..++.+++ +.+|++|+|+|++. .......+++.+... +.|+++|.||+|+.+.+.++
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~ 158 (247)
T 3lxw_A 80 IFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHD 158 (247)
T ss_dssp CSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHH
Confidence 8 66777777776 89999999999985 667777777776553 78999999999997766544
Q ss_pred H
Q psy5021 149 C 149 (1021)
Q Consensus 149 ~ 149 (1021)
.
T Consensus 159 ~ 159 (247)
T 3lxw_A 159 Y 159 (247)
T ss_dssp H
T ss_pred H
Confidence 3
No 210
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.57 E-value=4.1e-15 Score=148.47 Aligned_cols=158 Identities=15% Similarity=0.102 Sum_probs=103.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++..... ......+... .....+......+.+|||||+++|..
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~ 66 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVE--------------KYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTA 66 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC--------------SCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHH
Confidence 45678899999999999999999743110 0001111111 11122223345788999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..+++.+|++++|+|+++.... ....++..+.. .++| +++|+||+|+.+..... .++...+.+.++
T Consensus 67 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 139 (167)
T 1c1y_A 67 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVVG---KEQGQNLARQWC--- 139 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGCCSC---HHHHHHHHHHTT---
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECccccccccCC---HHHHHHHHHHcc---
Confidence 988999999999999999874322 22333333333 2677 89999999997532111 123333444332
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
..+++++||++| .|+++++++|.+.
T Consensus 140 -~~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 140 -NCAFLESSAKSK-----------INVNEIFYDLVRQ 164 (167)
T ss_dssp -SCEEEECBTTTT-----------BSHHHHHHHHHHH
T ss_pred -CCcEEEecCCCC-----------CCHHHHHHHHHHH
Confidence 357999999987 3889999988654
No 211
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.57 E-value=9.8e-15 Score=152.39 Aligned_cols=117 Identities=18% Similarity=0.098 Sum_probs=79.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-.... .. |+.... ...+..++..+.+.+||||
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~------~~--------------t~~~~~-~~~~~~~~~~~~~~i~Dt~ 65 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY------IP--------------TVFDNF-SANVAVDGQIVNLGLWDTA 65 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSC------CC--------------SSCCCE-EEEEECSSCEEEEEEECCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccC------CC--------------ccceeE-EEEEEECCEEEEEEEEECC
Confidence 45678999999999999999999743211000 00 111111 1112223446789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhhc--CCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQKY--KVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~~--~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++|+|+|+++........ .| ..+... ++|+++|+||+|+..
T Consensus 66 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 66 GQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127 (212)
T ss_dssp CCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred CcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhh
Confidence 99999988888999999999999998754433322 33 333332 899999999999853
No 212
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.57 E-value=2.8e-15 Score=161.99 Aligned_cols=111 Identities=22% Similarity=0.299 Sum_probs=78.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..+|+++|++|+|||||+++|.... ...+ +| .|+|+......+ . . +..+++|||||
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~---~~v~---------~~------pg~tv~~~~~~~--~--~-~~~l~l~DtpG 58 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHN---QRVG---------NW------PGVTVERKSGLV--K--K-NKDLEIQDLPG 58 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCC---CCCC---------SS------SCCCCSCEEEEC--T--T-CTTEEEEECCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCC---Cccc---------CC------CCCcEEEEEEEE--e--c-CCeEEEEECCC
Confidence 35789999999999999999996321 1111 11 266665443332 2 2 46799999999
Q ss_pred CCCcH------HHHHHHhh--ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFT------IEVERSLR--VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~------~~~~~~l~--~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+.+|. ..+..++. .+|++++|+|++.. .....++.++...++|+++++||+|+.
T Consensus 59 ~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 59 IYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVL 120 (272)
T ss_dssp CSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHH
T ss_pred cCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhC
Confidence 99886 33445555 59999999999862 233444566677899999999999963
No 213
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.57 E-value=6.8e-15 Score=147.57 Aligned_cols=156 Identities=17% Similarity=0.091 Sum_probs=107.3
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+.++|.+++|||||+++|++.... .. ..|+......+...+..+.+|||||+++|...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~---------------~~----~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 67 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV---------------TT----IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPY 67 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC---------------CC----CCCSSEEEEEEEETTEEEEEEEECCCGGGGGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC---------------Cc----CCcCccceEEEEECCEEEEEEECCCChhhhHH
Confidence 467889999999999999999864311 01 11222333445666889999999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
+..+++.+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+... .+.+...+. .......
T Consensus 68 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~~~~~~~~----~~~~~~~ 141 (171)
T 1upt_A 68 WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQDMEQAMT-SSEMANSLG----LPALKDR 141 (171)
T ss_dssp GGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HHHHHHHHT----GGGCTTS
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCE-EEEEEECCCCcCCCC-HHHHHHHhC----chhccCC
Confidence 8888899999999999988653 333344443332 3666 999999999976321 122222221 1111223
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.++++++||++| .|+++++++|.+.+
T Consensus 142 ~~~~~~~Sa~~~-----------~gi~~l~~~l~~~i 167 (171)
T 1upt_A 142 KWQIFKTSATKG-----------TGLDEAMEWLVETL 167 (171)
T ss_dssp CEEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred ceEEEECcCCCC-----------cCHHHHHHHHHHHH
Confidence 468999999987 38899999887644
No 214
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.57 E-value=1.7e-15 Score=155.19 Aligned_cols=158 Identities=15% Similarity=0.124 Sum_probs=109.3
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN 730 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~ 730 (1021)
.+.+.++|.+++|||||+++|++.... .......|.+.......+......+.||||||+++|...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 87 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFT--------------PAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI 87 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC--------------CSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--------------CCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh
Confidence 467899999999999999999974311 111123344544444444434567899999999999888
Q ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 731 MITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 731 ~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
+..+++.+|++|+|+|+++... ....+++..+... ++| +++|+||+|+.+..... .++..++.+.++
T Consensus 88 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~----- 158 (189)
T 2gf9_A 88 TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDERVVP---AEDGRRLADDLG----- 158 (189)
T ss_dssp GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT-----
T ss_pred HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccCCC---HHHHHHHHHHcC-----
Confidence 8888999999999999987433 2334455555554 566 99999999997532111 123344444444
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| .|+++++++|.+.+
T Consensus 159 ~~~~~~Sa~~g-----------~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 159 FEFFEASAKEN-----------INVKQVFERLVDVI 183 (189)
T ss_dssp CEEEECBTTTT-----------BSHHHHHHHHHHHH
T ss_pred CeEEEEECCCC-----------CCHHHHHHHHHHHH
Confidence 47999999987 38888888887643
No 215
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=1e-14 Score=146.29 Aligned_cols=157 Identities=17% Similarity=0.121 Sum_probs=104.0
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.+.++|.+++|||||+++|++...... .....+.+.. ....+......+.+|||||+++|...+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~--------------~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~ 68 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRES--------------YIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQ 68 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSS--------------CCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHH
Confidence 5678899999999999999997431100 0111122221 111222223468899999999999999
Q ss_pred HHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc-----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 732 ITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV-----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~-----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
..++..+|++++|+|+++... .+...++..+... ++| +++|+||+|+.+..+... .+...+.+..+
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~~~v~~---~~~~~~~~~~~---- 140 (172)
T 2erx_A 69 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDESPSREVQS---SEAEALARTWK---- 140 (172)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGGCCSCH---HHHHHHHHHHT----
T ss_pred HHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccccccccCH---HHHHHHHHHhC----
Confidence 999999999999999987432 2233444444432 577 999999999875322111 12223333333
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||++| .|+++++++|.+.+.
T Consensus 141 -~~~~~~Sa~~~-----------~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 141 -CAFMETSAKLN-----------HNVKELFQELLNLEK 166 (172)
T ss_dssp -CEEEECBTTTT-----------BSHHHHHHHHHHTCC
T ss_pred -CeEEEecCCCC-----------cCHHHHHHHHHHHHh
Confidence 47899999987 389999999988654
No 216
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.57 E-value=1.1e-14 Score=149.55 Aligned_cols=117 Identities=12% Similarity=0.043 Sum_probs=80.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-.... ..|+...... .+..++..+.+++||||
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~--------------------~~t~~~~~~~-~~~~~~~~~~~~i~Dt~ 79 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAY--------------------VPTVFENFSH-VMKYKNEEFILHLWDTA 79 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC--------------------CCCSEEEEEE-EEEETTEEEEEEEEEEC
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCcc--------------------CCeeeeeeEE-EEEECCEEEEEEEEECC
Confidence 34568999999999999999999753311000 0011111111 12223346778999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHHH-HHhh--cCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVWF-QSQK--YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~-~~~~--~~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++|+|+|+++....... ..|. .+.. .++|+++|+||+|+..
T Consensus 80 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 80 GQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp CSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred CcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 9999999999999999999999999986443332 3333 3332 3689999999999864
No 217
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.57 E-value=3.8e-15 Score=153.00 Aligned_cols=158 Identities=18% Similarity=0.114 Sum_probs=107.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++..... ......|.+.......+......+.||||||+++|..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSH--------------DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA 89 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCS--------------SCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh
Confidence 45788999999999999999999743211 1112234444444444443456789999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.+..+++.+|++|+|+|+++.... ....++..+... ++| +++|+||+|+.+..... ..+...+++..+
T Consensus 90 ~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 161 (193)
T 2oil_A 90 ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIV-VMLVGNKSDLSQAREVP---TEEARMFAENNG---- 161 (193)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT----
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECCCcccccccC---HHHHHHHHHHcC----
Confidence 888999999999999999874432 223444444433 556 89999999997532111 123334444443
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||++| .|+++++++|.+.
T Consensus 162 -~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 185 (193)
T 2oil_A 162 -LLFLETSALDS-----------TNVELAFETVLKE 185 (193)
T ss_dssp -CEEEEECTTTC-----------TTHHHHHHHHHHH
T ss_pred -CEEEEEeCCCC-----------CCHHHHHHHHHHH
Confidence 57999999987 3888888887653
No 218
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.57 E-value=5.3e-15 Score=150.76 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=106.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++.... .+....++.+.....+..++ ..+.||||||+++|.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 73 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFK----------------DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR 73 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC----------------TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHH
Confidence 467889999999999999999874311 11122334444444555555 578899999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..++..+|++|+|+|+++....+. ..++..+.. .++| +++|+||+|+.+..... ..+...+.+..+
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 146 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-IILCGNKKDLDADREVT---FLEASRFAQENE--- 146 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT---
T ss_pred HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccC---HHHHHHHHHHcC---
Confidence 999999999999999999987543222 233333333 3566 99999999996522110 122334444443
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |+++++++|.+.+
T Consensus 147 --~~~~~~Sa~~~~-----------gi~~l~~~l~~~~ 171 (186)
T 2bme_A 147 --LMFLETSALTGE-----------NVEEAFVQCARKI 171 (186)
T ss_dssp --CEEEECCTTTCT-----------THHHHHHHHHHHH
T ss_pred --CEEEEecCCCCC-----------CHHHHHHHHHHHH
Confidence 579999999873 7888888776543
No 219
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.57 E-value=1.6e-14 Score=148.78 Aligned_cols=161 Identities=14% Similarity=0.124 Sum_probs=104.1
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe---eCCeEEEEEecCChhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE---SENKHYAHVDCPGHAD 726 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~---~~~~~i~liDtpG~~~ 726 (1021)
+.+.+.++|..++|||||+++|.+.... +...|.+.......+. .....+.+|||||+++
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSP-----------------NETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMD 81 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCG-----------------GGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCC-----------------cceeeeccccceeeeeccCCCeeEEEEEECCCCHH
Confidence 4567888999999999999988763211 1122222222222222 3446899999999999
Q ss_pred hHHHH---HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEeeccccchhhHH---HHHHHH-HH
Q psy5021 727 YIKNM---ITGAAQMDGAILVCSAVDGPMPQTREHILLARQV-----GVPNIVVFLNKADCVQDKELL---DLVEME-IR 794 (1021)
Q Consensus 727 ~~~~~---~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~-----~ip~iIvviNK~Dl~~~~~~~---~~~~~~-~~ 794 (1021)
|...+ ..+++.+|++|+|+|+++........+..++... ++| +++|+||+|+.+.+.+. ..+..+ ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~v~~~~~~ 160 (196)
T 3llu_A 82 FFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMN-FEVFIHKVDGLSDDHKIETQRDIHQRAND 160 (196)
T ss_dssp TTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCc-EEEEEeccccCchhhhhHHHhHHHHHHHH
Confidence 98777 7889999999999999987333333333333332 666 99999999998643221 122222 22
Q ss_pred HhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 795 ELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 795 ~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++.+ .......++++++||++ . |++++++.|.+.
T Consensus 161 ~~~~-~~~~~~~~~~~e~Sa~~-~-----------~v~~~f~~l~~~ 194 (196)
T 3llu_A 161 DLAD-AGLEKLHLSFYLTSIYD-H-----------SIFEAFSKVVQK 194 (196)
T ss_dssp HHHH-TTCTTSCEEEEEECTTS-T-----------HHHHHHHHHHHH
T ss_pred HHHH-hhhhcCCcceEEEEech-h-----------hHHHHHHHHHHH
Confidence 3333 11122347899999996 4 889999888653
No 220
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.57 E-value=6.4e-15 Score=150.78 Aligned_cols=161 Identities=14% Similarity=0.080 Sum_probs=104.8
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~ 726 (1021)
.+.+.+.++|.+++|||||+++|++..... ......|. +.....+..++ ..+.||||||+++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPD--------------RTEATIGV--DFRERAVDIDGERIKIQLWDTAGQER 81 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCS--------------SCCCCCSC--CEEEEEEEETTEEEEEEEEECCCSHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCCcce--EEEEEEEEECCEEEEEEEEECCCchh
Confidence 356788999999999999999998743110 11122233 33333344444 5789999999999
Q ss_pred hH-HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 727 YI-KNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 727 ~~-~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
|. ..+..+++.+|++|+|+|+++.... ....++..+.. .++| +++|+||+|+.+..+.. .++...+.+..
T Consensus 82 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~ 157 (189)
T 1z06_A 82 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRSAIQVP---TDLAQKFADTH 157 (189)
T ss_dssp HHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGGGCCSC---HHHHHHHHHHT
T ss_pred hhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceeC---HHHHHHHHHHc
Confidence 98 7778888999999999999874332 22333333333 3567 99999999996532111 12233444444
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+ ++++++||+++. +..+++++++.|.+.+
T Consensus 158 ~-----~~~~~~Sa~~~~--------~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 158 S-----MPLFETSAKNPN--------DNDHVEAIFMTLAHKL 186 (189)
T ss_dssp T-----CCEEECCSSSGG--------GGSCHHHHHHHHC---
T ss_pred C-----CEEEEEeCCcCC--------cccCHHHHHHHHHHHH
Confidence 4 468999999872 1238899999987654
No 221
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.56 E-value=1.2e-14 Score=150.31 Aligned_cols=107 Identities=15% Similarity=0.142 Sum_probs=77.2
Q ss_pred eEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-cCCCeEEEEEeeccccchhhHHHHHHH
Q psy5021 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ-VGVPNIVVFLNKADCVQDKELLDLVEM 791 (1021)
Q Consensus 714 ~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~-~~ip~iIvviNK~Dl~~~~~~~~~~~~ 791 (1021)
..+.||||||+++|...+..+++.+|++|+|+|++++...+. ..++..+.. .+.| +++|+||+|+....... +
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~p-iilv~NK~D~~~~~~~~----~ 167 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYI-IILVANKIDKNKFQVDI----L 167 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCE-EEEEEECTTCC-CCSCH----H
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCc-EEEEEECCCcccccCCH----H
Confidence 678999999999999999999999999999999998654333 334444444 4555 99999999942211112 3
Q ss_pred HHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 792 EIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 792 ~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++.++++..+ ++++++||+++. ++++++++|.+.
T Consensus 168 ~~~~~~~~~~-----~~~~~~Sa~~~~-----------~i~~l~~~l~~~ 201 (208)
T 3clv_A 168 EVQKYAQDNN-----LLFIQTSAKTGT-----------NIKNIFYMLAEE 201 (208)
T ss_dssp HHHHHHHHTT-----CEEEEECTTTCT-----------THHHHHHHHHHH
T ss_pred HHHHHHHHcC-----CcEEEEecCCCC-----------CHHHHHHHHHHH
Confidence 3444554443 589999999873 888888888653
No 222
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.56 E-value=1.1e-14 Score=145.40 Aligned_cols=156 Identities=17% Similarity=0.117 Sum_probs=101.4
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~ 726 (1021)
++.+.+.++|.+++|||||+++|++..... ......+.+. ...+..++ ..+.+|||||+++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--------------~~~~t~~~~~---~~~~~~~~~~~~~~l~D~~G~~~ 64 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVE--------------DYEPTKADSY---RKKVVLDGEEVQIDILDTAGQED 64 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCS--------------CCCTTCCEEE---EEEEEETTEEEEEEEEECCC---
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCC--------------CCCCCcceEE---EEEEEECCEEEEEEEEECCCcch
Confidence 345678899999999999999999743110 0011112111 22233344 4788999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
|...+..+++.+|++++|+|+++..... ...++..+... ++| +++|+||+|+.+..+. ..++...+++..+
T Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 140 (168)
T 1u8z_A 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV---SVEEAKNRADQWN 140 (168)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGGGCCS---CHHHHHHHHHHHT
T ss_pred hHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccccccCcc---CHHHHHHHHHHcC
Confidence 9999999999999999999998743322 23333333332 677 9999999999753211 1123344444444
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||++| .|+++++++|.+.
T Consensus 141 -----~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 164 (168)
T 1u8z_A 141 -----VNYVETSAKTR-----------ANVDKVFFDLMRE 164 (168)
T ss_dssp -----CEEEECCTTTC-----------TTHHHHHHHHHHH
T ss_pred -----CeEEEeCCCCC-----------CCHHHHHHHHHHH
Confidence 47999999987 3889999888654
No 223
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.56 E-value=7.4e-15 Score=170.78 Aligned_cols=112 Identities=19% Similarity=0.223 Sum_probs=88.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
.+|+|+|.+|+|||||+++|+.....+.. ...|+|.+.....+.+. +..+.||||||+.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs-----------------~~~gTT~d~~~~~i~~~----g~~~~l~DTaG~~ 302 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVT-----------------DIPGTTRDVISEEIVIR----GILFRIVDTAGVR 302 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCC-----------------CSSCCSSCSCCEEEEET----TEEEEEEESSCCC
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccC-----------------CCCCeeeeeEEEEEecC----CeEEEEEECCCcc
Confidence 47999999999999999999876433222 12345555555566676 7889999999998
Q ss_pred -CcH--------HHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 89 -DFT--------IEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 -~f~--------~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
++. ..+..+++.+|++|+|+|++++...+..++|+.+ .++|+++|+||+|+..
T Consensus 303 ~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 303 SETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVE 364 (482)
T ss_dssp SSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCC
T ss_pred ccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECccccc
Confidence 664 3456788999999999999998877777787765 4889999999999863
No 224
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.56 E-value=5.6e-14 Score=148.48 Aligned_cols=116 Identities=16% Similarity=0.067 Sum_probs=76.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|..|+|||||+++|+...-. . . ...+.|.......+.+. +..+.|||||
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~--~----------~------~~~~~t~~~~~~~~~~~----~~~~~l~Dtp 84 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD--V----------Q------SYSFTTKNLYVGHFDHK----LNKYQIIDTP 84 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE--E----------E------CC-----CEEEEEEEET----TEEEEEEECT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc--c----------C------CCCCcceeeeeeeeecC----CCeEEEEECC
Confidence 45689999999999999999999632110 0 0 01223433333334444 6889999999
Q ss_pred CCCCc---------HHHHHHHhhccCeEEEEEeCCCCCchh---HHHHHHHHhhc--CCCEEEEEeCcCCCC
Q psy5021 86 GHVDF---------TIEVERSLRVLDGAVIIICASSGIQPQ---TETVWFQSQKY--KVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f---------~~~~~~~l~~~D~~ilvvda~~g~~~~---t~~~~~~~~~~--~~p~iiviNK~D~~~ 143 (1021)
|+.++ ...+......+|++|+|+|+++..... ....+..+... ++|+++|+||+|+..
T Consensus 85 G~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 85 GLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp TTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred CCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 99432 122334467889999999999865432 33445555554 899999999999863
No 225
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=150.68 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=105.9
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++... ..+....++.+.....+..++ ..+.||||||+++|.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 92 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAF----------------SERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR 92 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC--------------------------CEEEEEEEETTEEEEEEEECCTTCGGGH
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCC----------------CCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH
Confidence 46789999999999999999987431 111112223334344455555 578899999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++|+|+|+++... .....++..+.. .++| +++|+||+|+.+..... .+++.++++..++
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~~~~~~~~-- 166 (201)
T 2hup_A 93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIV-QLLIGNKSDLSELREVS---LAEAQSLAEHYDI-- 166 (201)
T ss_dssp HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHTTC--
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCccccccccC---HHHHHHHHHHcCC--
Confidence 999999999999999999987433 223344444444 2466 89999999997521110 1234445554443
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+++++||++| .|+++++++|.+.+
T Consensus 167 --~~~~~~SA~~g-----------~gi~~l~~~l~~~i 191 (201)
T 2hup_A 167 --LCAIETSAKDS-----------SNVEEAFLRVATEL 191 (201)
T ss_dssp --SEEEECBTTTT-----------BSHHHHHHHHHHHH
T ss_pred --CEEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 27899999987 38888988887654
No 226
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.56 E-value=3.5e-15 Score=153.56 Aligned_cols=169 Identities=17% Similarity=0.112 Sum_probs=108.3
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEE-EEeeCCeEEEEEecCChhhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHV-EYESENKHYAHVDCPGHADY 727 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~-~~~~~~~~i~liDtpG~~~~ 727 (1021)
-+.+.+.++|.+++|||||++.|.+............ ......++.|.+...... .++.....+.+|||||+++|
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVS----LATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEE----EECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccc----cccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 3457788999999999999987775322111100000 000011112222211111 22233457899999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH---------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQ---------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~---------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
...+..+++.+|++|+|+|++++...+..+.+..+.. .++| +++|+||+|+.+.. ..+++.++++
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~-----~~~~~~~~~~ 161 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP-IVIQVNKRDLPDAL-----PVEMVRAVVD 161 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSC-EEEEEECTTSTTCC-----CHHHHHHHHC
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCC-EEEEEEchhccccc-----CHHHHHHHHH
Confidence 9999999999999999999997655555444433322 3677 99999999997521 1234555665
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..++ .+++++||++| .|+++++++|.+.+
T Consensus 162 ~~~~----~~~~~~Sa~~~-----------~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 162 PEGK----FPVLEAVATEG-----------KGVFETLKEVSRLV 190 (198)
T ss_dssp TTCC----SCEEECBGGGT-----------BTHHHHHHHHHHHH
T ss_pred hcCC----ceEEEEecCCC-----------cCHHHHHHHHHHHH
Confidence 5543 27999999987 38888888886543
No 227
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=5.2e-15 Score=152.01 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=108.9
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++.... .......|.+.......+......+.||||||+++|.
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 78 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFD--------------PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR 78 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCC--------------TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC--------------ccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhh
Confidence 45678899999999999999999874311 1112233444444444444445678999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..+++.+|++|+|+|+++....+. ..++..+... ++| +++|+||+|+.+.+... ++...+++..+
T Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~-- 151 (195)
T 1x3s_A 79 TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV-NMLVGNKIDKENREVDR----NEGLKFARKHS-- 151 (195)
T ss_dssp CSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCE-EEEEEECTTSSSCCSCH----HHHHHHHHHTT--
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCc-EEEEEECCcCcccccCH----HHHHHHHHHcC--
Confidence 888999999999999999987543222 3333444332 455 89999999995422111 22333444443
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||+++ .++++++++|.+.+
T Consensus 152 ---~~~~~~Sa~~~-----------~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 152 ---MLFIEASAKTC-----------DGVQCAFEELVEKI 176 (195)
T ss_dssp ---CEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred ---CEEEEecCCCC-----------CCHHHHHHHHHHHH
Confidence 57999999987 38888888887654
No 228
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.56 E-value=6.7e-15 Score=151.97 Aligned_cols=158 Identities=17% Similarity=0.209 Sum_probs=104.1
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+...++++|.+++|||||+++|++.... .... |+......+..++..+.+|||||+++|.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~---------------~~~~----t~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 83 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG---------------QHVP----TLHPTSEELTIAGMTFTTFDLGGHIQAR 83 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC---------------------C----CCCCSCEEEEETTEEEEEEEECC----C
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC---------------ccCC----CCCceeEEEEECCEEEEEEECCCcHhhH
Confidence 45678899999999999999999874311 0011 2222234556677899999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc--
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD-- 801 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~-- 801 (1021)
..+..+++.+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+. ...+ ++.+.+....
T Consensus 84 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~~~----~~~~~~~~~~~~ 157 (198)
T 1f6b_A 84 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP-ILILGNKIDRPEA-ISEE----RLREMFGLYGQT 157 (198)
T ss_dssp CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTSTTC-CCHH----HHHHHHTCTTTC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEEECCCcccc-CCHH----HHHHHhCccccc
Confidence 887788899999999999987543 333444443332 3677 9999999999751 1122 2333332211
Q ss_pred -------cC---CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 802 -------FD---GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 802 -------~~---~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+. ....+++++||++| +|+++++++|.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~SA~~g-----------~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 158 TGKGSVSLKELNARPLEVFMCSVLKR-----------QGYGEGFRWMAQYI 197 (198)
T ss_dssp CCSSCCCTTTCCSCCEEEEECBTTTT-----------BSHHHHHHHHHTTC
T ss_pred ccccccccccccCceEEEEEEECCCC-----------CCHHHHHHHHHHhc
Confidence 10 12468999999988 48999999987643
No 229
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.56 E-value=1.1e-14 Score=151.75 Aligned_cols=114 Identities=20% Similarity=0.180 Sum_probs=79.3
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-.|+++|..++|||||+++++...- .. ++ -.|+........+..++..+.++||||+|+.
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f--~~-----------~~-------~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSF--DN-----------TY-------QATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--C----------------------------CEEEEEECSSCEEEEEEECCSCTT
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCC--CC-----------Cc-------CCccceEEEEEEEEecceEEEEEEEECCCch
Confidence 4699999999999999999974211 00 01 1233333333333444557889999999999
Q ss_pred CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHH---hhcCCCEEEEEeCcCCC
Q psy5021 89 DFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQS---QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 89 ~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~---~~~~~p~iiviNK~D~~ 142 (1021)
+|...+..+++.+|++++|+|.++........-| ..+ ...++|+++|.||+|+.
T Consensus 74 ~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp TCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred hhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence 9999999999999999999999875443333333 333 23578999999999985
No 230
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.56 E-value=1.5e-14 Score=171.40 Aligned_cols=113 Identities=15% Similarity=0.075 Sum_probs=85.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..+|+++|.+|+|||||+++|+..... . . ..|+......+.+. ++.++||||||
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~------------~-------~~T~~~~~~~~~~~----~~~~~l~Dt~G 375 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV--T------------T-------IPTVGFNVETVTYK----NVKFNVWDVGG 375 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC--C------------C-------CCCSSEEEEEEESS----SCEEEEEEECC
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC--C------------c-------CCccceeEEEEEeC----CEEEEEEECCC
Confidence 4578999999999999999999753311 0 0 11444444556666 78999999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HHHHHhh----cCCCEEEEEeCcCCCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VWFQSQK----YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~~~~~~----~~~p~iiviNK~D~~~~ 144 (1021)
+.+|...+..+++.+|++|+|+|+++....+... .|..+.. .++|+++|+||+|+...
T Consensus 376 ~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 376 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp CGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred cHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 9999999999999999999999999864443332 2233322 48999999999999653
No 231
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.56 E-value=8.5e-15 Score=150.15 Aligned_cols=157 Identities=19% Similarity=0.102 Sum_probs=105.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeee-EEEEeeC-----------CeEEE
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTS-HVEYESE-----------NKHYA 717 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~-~~~~~~~-----------~~~i~ 717 (1021)
+.+.+.++|.+++|||||+++|++..... ......|. +.. ...+... ...+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNS--------------KFITTVGI--DFREKRVVYRANGPDGAVGRGQRIHLQ 73 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC--------------SCCCCCSE--EEEEEEEEECTTSCCCSSCCCEEEEEE
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCc--------------Ccccccce--eeeeEEEEEecCCcccccccCcEEEEE
Confidence 34678899999999999999999743110 01111222 222 2223333 34789
Q ss_pred EEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHH
Q psy5021 718 HVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEME 792 (1021)
Q Consensus 718 liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~ 792 (1021)
||||||+++|...+..+++.+|++|+|+|+++....+. ..++..+.. .++| +++|+||+|+.+..... .++
T Consensus 74 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~ 149 (195)
T 3bc1_A 74 LWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLEDQRAVK---EEE 149 (195)
T ss_dssp EEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECTTCGGGCCSC---HHH
T ss_pred EEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccC---HHH
Confidence 99999999999999999999999999999987544332 344444443 3667 99999999997522111 123
Q ss_pred HHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 793 IRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 793 ~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+.++.+..+ ++++++||+++. +++++++.|.+.+
T Consensus 150 ~~~~~~~~~-----~~~~~~Sa~~~~-----------~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 150 ARELAEKYG-----IPYFETSAANGT-----------NISHAIEMLLDLI 183 (195)
T ss_dssp HHHHHHHHT-----CCEEECCTTTCT-----------THHHHHHHHHHHH
T ss_pred HHHHHHHcC-----CCEEEEECCCCC-----------CHHHHHHHHHHHH
Confidence 344444444 468999999873 8888888876543
No 232
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.56 E-value=4e-15 Score=150.66 Aligned_cols=156 Identities=13% Similarity=0.083 Sum_probs=107.4
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++.... .+...+.+.+.....+..++ ..+.+|||||+++|.
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 72 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFS----------------GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFR 72 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC-------------------CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC----------------CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhh
Confidence 467889999999999999999974311 12223445555555566666 678899999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
..+..++..+|++++|+|++++...+. ..++..+... ++| +|+|+||+|+.+...... .+...+....+
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~---- 144 (181)
T 3tw8_B 73 TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVC-RILVGNKNDDPERKVVET---EDAYKFAGQMG---- 144 (181)
T ss_dssp SCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSE-EEEEEECTTCGGGCCSCH---HHHHHHHHHHT----
T ss_pred hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCCCchhcccCH---HHHHHHHHHcC----
Confidence 888888999999999999998543332 2333333333 356 899999999875321111 22333444444
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| .|+++++++|.+.+
T Consensus 145 -~~~~~~Sa~~~-----------~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 145 -IQLFETSAKEN-----------VNVEEMFNCITELV 169 (181)
T ss_dssp -CCEEECBTTTT-----------BSHHHHHHHHHHHH
T ss_pred -CeEEEEECCCC-----------CCHHHHHHHHHHHH
Confidence 46899999987 38888888887643
No 233
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.56 E-value=1.9e-14 Score=152.21 Aligned_cols=162 Identities=14% Similarity=0.110 Sum_probs=106.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh-----
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH----- 724 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~----- 724 (1021)
+...+.++|.+++|||||+++|++..... ....+.|.+.....+...+..+.||||||+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 91 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDV----------------QSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAF 91 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEE----------------ECC-----CEEEEEEEETTEEEEEEECTTTTTSCG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc----------------CCCCCcceeeeeeeeecCCCeEEEEECCCCcCccc
Confidence 45788999999999999999999753211 112344555555566667789999999999
Q ss_pred -hhh---HHHHHHHhhhCCEEEEEEECCCCCcHH---HHHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHH
Q psy5021 725 -ADY---IKNMITGAAQMDGAILVCSAVDGPMPQ---TREHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRE 795 (1021)
Q Consensus 725 -~~~---~~~~~~~~~~aD~ailVvDa~~g~~~q---t~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~ 795 (1021)
++. ...+...+..+|++|+|+|+++....+ ..+++..+... ++| +++|+||+|+.+...........+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~ 170 (228)
T 2qu8_A 92 ENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS-IVIGFNKIDKCNMDSLSIDNKLLIKQ 170 (228)
T ss_dssp GGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCC-EEEEEECGGGCC--CCCHHHHHHHHH
T ss_pred chhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCc-EEEEEeCcccCCchhhHHHHHHHHHH
Confidence 442 122334467889999999999865422 23445555544 777 99999999997633222222334444
Q ss_pred hhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 796 LLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 796 ~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+.+..+ ..++++++||++| .|+++++++|.+.+
T Consensus 171 ~~~~~~---~~~~~~~~SA~~g-----------~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 171 ILDNVK---NPIKFSSFSTLTG-----------VGVEQAKITACELL 203 (228)
T ss_dssp HHHHCC---SCEEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred HHHhcC---CCceEEEEecccC-----------CCHHHHHHHHHHHH
Confidence 544433 1268999999987 38888888887644
No 234
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.56 E-value=1.1e-14 Score=147.12 Aligned_cols=157 Identities=15% Similarity=0.057 Sum_probs=104.9
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++.... .+...+++.+.....+..++ ..+.||||||+++|
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 69 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFD----------------TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 69 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC----------------C----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh
Confidence 3467889999999999999999874311 11122233333344455555 47889999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ-------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~-------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
...+..+++.+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+.+.+...+ ++.++++.
T Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~----~~~~~~~~ 144 (177)
T 1wms_A 70 RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDISERQVSTE----EAQAWCRD 144 (177)
T ss_dssp HHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTCSSCSSCHH----HHHHHHHH
T ss_pred hhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCcccccccCHH----HHHHHHHh
Confidence 9988888999999999999987543222 223333322 4567 899999999874221122 23333332
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.. ..+++++||++| .|++++++.|.+.+
T Consensus 145 ~~----~~~~~~~Sa~~~-----------~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 145 NG----DYPYFETSAKDA-----------TNVAAAFEEAVRRV 172 (177)
T ss_dssp TT----CCCEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred cC----CceEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 11 357999999987 38888888887643
No 235
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.56 E-value=4.4e-15 Score=152.32 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=105.9
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++.... .......|.+.......+......+.||||||+++|.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 84 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--------------PVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFR 84 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCC--------------C-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCC--------------CCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhh
Confidence 34578899999999999999999974311 1112223333333333332223578999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++|+|+|+++....+ ...++..+... ++| +++|+||+|+.+..... .++...+.+..+
T Consensus 85 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~--- 157 (191)
T 2a5j_A 85 SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDLESRRDVK---REEGEAFAREHG--- 157 (191)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT---
T ss_pred hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCCccccC---HHHHHHHHHHcC---
Confidence 88888999999999999998744322 23444444443 566 89999999997522111 123334444444
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||+++ .|++++++.|.+.
T Consensus 158 --~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 181 (191)
T 2a5j_A 158 --LIFMETSAKTA-----------CNVEEAFINTAKE 181 (191)
T ss_dssp --CEEEEECTTTC-----------TTHHHHHHHHHHH
T ss_pred --CEEEEEeCCCC-----------CCHHHHHHHHHHH
Confidence 47899999987 3888888887654
No 236
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.56 E-value=2.4e-16 Score=162.92 Aligned_cols=118 Identities=17% Similarity=0.166 Sum_probs=80.5
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.++..+|+++|+.|+|||||+++|+... ...+...+++.......+.+. +..+.+++|||
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~Dt 89 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDT------------------YTESYISTIGVDFKIRTIELD--GKTIKLQIWDT 89 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCC------------------CCCHHHHHHCCSEEEEEEEET--TEEEEEEEECC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCC------------------CCCCcCCcccceEEEEEEEEC--CEEEEEEEEEC
Confidence 4567899999999999999999984211 011122333433333334443 33578999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh---cCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~---~~~p~iiviNK~D~~ 142 (1021)
||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 90 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 90 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp TTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred CCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 99999998888899999999999999986554444334 33333 278999999999985
No 237
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.56 E-value=4.2e-15 Score=148.91 Aligned_cols=156 Identities=18% Similarity=0.098 Sum_probs=98.1
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++.... .+....++.+.....+..++ ..+.+|||||+++|.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 69 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFN----------------DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH 69 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCC----------------SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC----
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC----------------cCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhh
Confidence 467889999999999999999974311 01111222233333344433 467899999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++++|+|+++....+ ...++..+.. .++| +++|+||+|+.+..... .++..++.+..+
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 142 (170)
T 1z08_A 70 ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC-LCIVGNKIDLEKERHVS---IQEAESYAESVG--- 142 (170)
T ss_dssp ---CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT---
T ss_pred hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccccC---HHHHHHHHHHcC---
Confidence 88888889999999999998754322 2333333333 3566 89999999997532111 123344444444
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| .|+++++++|.+.+
T Consensus 143 --~~~~~~Sa~~~-----------~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 143 --AKHYHTSAKQN-----------KGIEELFLDLCKRM 167 (170)
T ss_dssp --CEEEEEBTTTT-----------BSHHHHHHHHHHHH
T ss_pred --CeEEEecCCCC-----------CCHHHHHHHHHHHH
Confidence 57899999987 38899998887543
No 238
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.56 E-value=5.3e-15 Score=155.03 Aligned_cols=157 Identities=18% Similarity=0.114 Sum_probs=103.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC------------CeEEE
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE------------NKHYA 717 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~------------~~~i~ 717 (1021)
+.+.+.++|.+++|||||+++|++.... .+....++.+.....+..+ ...+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFN----------------PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 87 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCC----------------CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCC----------------cCCCCceeEEEEEEEEEECCccccccccCceeEEEE
Confidence 3467889999999999999999974311 0111122222222223222 45789
Q ss_pred EEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHH
Q psy5021 718 HVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTR-EHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEME 792 (1021)
Q Consensus 718 liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~-e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~ 792 (1021)
||||||+++|...+..+++.+|++|+|+|+++....+.. .++..+.. .++| +++|+||+|+.+..... ..+
T Consensus 88 l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~~~v~---~~~ 163 (217)
T 2f7s_A 88 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD-IVLIGNKADLPDQREVN---ERQ 163 (217)
T ss_dssp EEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCE-EEEEEECTTCGGGCCSC---HHH
T ss_pred EEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCC-EEEEEECCccccccccC---HHH
Confidence 999999999999999999999999999999874332222 22222221 3456 99999999997532211 123
Q ss_pred HHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 793 IRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 793 ~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..++.+.++ ++++++||+++. ++++++++|.+.+
T Consensus 164 ~~~~~~~~~-----~~~~~~Sa~~g~-----------gi~~l~~~l~~~i 197 (217)
T 2f7s_A 164 ARELADKYG-----IPYFETSAATGQ-----------NVEKAVETLLDLI 197 (217)
T ss_dssp HHHHHHHTT-----CCEEEEBTTTTB-----------THHHHHHHHHHHH
T ss_pred HHHHHHHCC-----CcEEEEECCCCC-----------CHHHHHHHHHHHH
Confidence 444444444 468999999873 7888888776543
No 239
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=8.3e-15 Score=152.40 Aligned_cols=172 Identities=15% Similarity=0.109 Sum_probs=108.3
Q ss_pred chhhhccCCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eE
Q psy5021 638 PLRELFGYSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KH 715 (1021)
Q Consensus 638 P~~e~~~~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~ 715 (1021)
|....-.|....+.+.+.++|.+++|||||+++|++..... ......+.+.. ..+..++ ..
T Consensus 12 ~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~---~~~~~~~~~~~ 74 (207)
T 2fv8_A 12 DLGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPE--------------VYVPTVFENYV---ADIEVDGKQVE 74 (207)
T ss_dssp -------CGGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEEE---EEEEETTEEEE
T ss_pred cccccccccccccCcEEEEECcCCCCHHHHHHHHhcCCCCC--------------cCCCcccceEE---EEEEECCEEEE
Confidence 33333345555667889999999999999999999743110 01111122221 1233444 46
Q ss_pred EEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHH-
Q psy5021 716 YAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKELLDLVE- 790 (1021)
Q Consensus 716 i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~- 790 (1021)
+.||||||+++|...+..++..+|++++|+|+++....+. ..++..+... ++| +++|+||+|+.+.....+.+.
T Consensus 75 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~ 153 (207)
T 2fv8_A 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDLRSDEHVRTELAR 153 (207)
T ss_dssp EEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGGGCHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhhhccccchhhhhh
Confidence 8899999999998888888899999999999987433222 3344455544 778 999999999976332222111
Q ss_pred --------HHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 791 --------MEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 791 --------~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+...+.+.++. .+++++||++| .|+++++++|.+.+
T Consensus 154 ~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g-----------~gi~el~~~l~~~i 198 (207)
T 2fv8_A 154 MKQEPVRTDDGRAMAVRIQA----YDYLECSAKTK-----------EGVREVFETATRAA 198 (207)
T ss_dssp TTCCCCCHHHHHHHHHHTTC----SEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHhcCC----CEEEEeeCCCC-----------CCHHHHHHHHHHHH
Confidence 122233333332 37899999987 38899999887654
No 240
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=4.9e-15 Score=150.04 Aligned_cols=158 Identities=11% Similarity=0.104 Sum_probs=99.8
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++..... .+...+++.+.....+..++ ..+.+|||||+++|
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 73 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLA---------------GTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERF 73 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC---------------CCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC---------------CCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 45778999999999999999998743210 01112233333333344444 47889999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
...+..++..+|++++|+|+++....+ ..+++..+.. .++| +++|+||+|+.+..... .++...+.+..+
T Consensus 74 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-- 147 (180)
T 2g6b_A 74 RSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA-LMLLGNKVDSAHERVVK---REDGEKLAKEYG-- 147 (180)
T ss_dssp -----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECCSTTSCCCSC---HHHHHHHHHHHT--
T ss_pred HHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccCcccccC---HHHHHHHHHHcC--
Confidence 988888899999999999998754322 2344444444 3566 99999999997532111 122333444444
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||+++ .|+++++++|.+.+
T Consensus 148 ---~~~~~~Sa~~~-----------~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 148 ---LPFMETSAKTG-----------LNVDLAFTAIAKEL 172 (180)
T ss_dssp ---CCEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred ---CeEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 46899999987 38888988887644
No 241
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.55 E-value=9.9e-15 Score=149.61 Aligned_cols=156 Identities=18% Similarity=0.165 Sum_probs=107.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+...++++|.+++|||||+++|++.... .. ..|+......+..++..+.+|||||+++|..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~---------------~~----~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 82 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA---------------TL----QPTWHPTSEELAIGNIKFTTFDLGGHIQARR 82 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC---------------CC----CCCCSCEEEEEEETTEEEEEEECCCSGGGTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC---------------cc----ccCCCCCeEEEEECCEEEEEEECCCCHHHHH
Confidence 4567899999999999999999974311 00 1122233445666788999999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc---
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD--- 801 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~--- 801 (1021)
.+..+++.+|++++|+|++++.. ....+++..+.. .++| +++|+||+|+.+. ... +++.+.+....
T Consensus 83 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~~----~~~~~~~~~~~~~~ 156 (190)
T 1m2o_B 83 LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP-FVILGNKIDAPNA-VSE----AELRSALGLLNTTG 156 (190)
T ss_dssp SGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTC-CCH----HHHHHHTTCSSCCC
T ss_pred HHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCC-CCH----HHHHHHhCCccccc
Confidence 87788899999999999998653 233344443332 3677 9999999999751 112 23333333221
Q ss_pred ----cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 802 ----FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 802 ----~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.....++++++||++| +|+++++++|.+.
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~g-----------~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 157 SQRIEGQRPVEVFMCSVVMR-----------NGYLEAFQWLSQY 189 (190)
T ss_dssp ---CCSSCCEEEEECBTTTT-----------BSHHHHHHHHHTT
T ss_pred cccccccceEEEEEeECCcC-----------CCHHHHHHHHHhh
Confidence 0123478999999988 4899999998753
No 242
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=2e-14 Score=147.96 Aligned_cols=115 Identities=19% Similarity=0.101 Sum_probs=76.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-.... . .|+.... ...+..++..+.+.+||||
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-------------~-------~t~~~~~-~~~~~~~~~~~~~~l~Dt~ 84 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY-------------D-------PTLESTY-RHQATIDDEVVSMEILDTA 84 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC-------------C-------TTCCEEE-EEEEEETTEEEEEEEEECC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCccc-------------C-------CCCCceE-EEEEEECCEEEEEEEEECC
Confidence 34578999999999999999999753221100 0 0111111 1111223336789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHHHH----HhhcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWFQ----SQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~~~----~~~~~~p~iiviNK~D~~ 142 (1021)
|+.+ ...+..+++.+|++|+|+|+++...... ...+.. ....++|+++|+||+|+.
T Consensus 85 G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 85 GQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp CCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred CCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence 9998 7778889999999999999987432211 222222 233689999999999985
No 243
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.55 E-value=2.4e-14 Score=148.08 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=79.7
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeee-eEEEeecccCceeEEEEcCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSAS-VSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~-~~~~~~~~~~~~~i~liDtP 85 (1021)
...+|+++|+.|+|||||+++|......... .. |+.... ..+.+ ++..+.+.+||||
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~------~~--------------t~~~~~~~~~~~--~~~~~~l~i~Dt~ 81 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY------VP--------------TVFENYIADIEV--DGKQVELALWDTA 81 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSC------CC--------------SSCCCCEEEEEE--TTEEEEEEEECCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCccc------CC--------------cccceEEEEEEE--CCEEEEEEEEECC
Confidence 3468999999999999999999753321110 00 111111 11222 2335789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHH-HHHhhc--CCCEEEEEeCcCCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVW-FQSQKY--KVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~-~~~~~~--~~p~iiviNK~D~~~~ 144 (1021)
|+.+|...+..+++.+|++|+|+|+++....+.. ..| ..+... ++|+++|+||+|+...
T Consensus 82 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 82 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp CSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred CchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence 9999988888899999999999999875333322 233 333333 8999999999998643
No 244
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.55 E-value=1.5e-14 Score=151.18 Aligned_cols=164 Identities=18% Similarity=0.205 Sum_probs=99.3
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC---CeEEEEEecCChhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE---NKHYAHVDCPGHAD 726 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~---~~~i~liDtpG~~~ 726 (1021)
+.+.+.++|.+++|||||+++|++..... ....++.+... +..+ +..+.+|||||+++
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~-----------------~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~ 66 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRD-----------------TQTSITDSSAI--YKVNNNRGNSLTLIDLPGHES 66 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCC-----------------BCCCCSCEEEE--EECSSTTCCEEEEEECCCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc-----------------ccCCcceeeEE--EEecCCCccEEEEEECCCChh
Confidence 45678899999999999999999743100 00112222222 4444 57899999999999
Q ss_pred hHH-HHHHHhhhCCEEEEEEECCCCCcHHHH---HHHHH-HHH-----cCCCeEEEEEeeccccchhhHHHHHHHHHHHh
Q psy5021 727 YIK-NMITGAAQMDGAILVCSAVDGPMPQTR---EHILL-ARQ-----VGVPNIVVFLNKADCVQDKELLDLVEMEIREL 796 (1021)
Q Consensus 727 ~~~-~~~~~~~~aD~ailVvDa~~g~~~qt~---e~l~~-~~~-----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~ 796 (1021)
|.. .+..+++.+|++|+|+|+++ ...+.. +.|.. +.. .++| +++|+||+|+.+... .+.+.+.+.+.
T Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~~~~~~l~~~ 143 (214)
T 2fh5_B 67 LRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPS-LLIACNKQDIAMAKS-AKLIQQQLEKE 143 (214)
T ss_dssp HHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCE-EEEEEECTTSTTCCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCC-EEEEEECCCCCCccc-HHHHHHHHHHH
Confidence 988 56677899999999999986 212222 22222 111 2466 999999999975322 23333333333
Q ss_pred hh---------------------ccc-----cC----CCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 797 LT---------------------EYD-----FD----GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 797 l~---------------------~~~-----~~----~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+. ..+ |. +..++++++||++|.+.. ..+|+++++++|.+
T Consensus 144 l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~-----~~~gv~~lf~~l~~ 212 (214)
T 2fh5_B 144 LNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDT-----GSADIQDLEKWLAK 212 (214)
T ss_dssp HHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC------------CCBCHHHHHHHHH
T ss_pred HHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccc-----cccChHHHHHHHHH
Confidence 32 011 00 015789999999872111 11378889988865
No 245
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.55 E-value=2.3e-15 Score=162.77 Aligned_cols=152 Identities=19% Similarity=0.223 Sum_probs=107.6
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH---
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI--- 728 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~--- 728 (1021)
..++++|.+|+|||||+|+|++..... ....|+|++.....+.. +..+.+|||||+.+|.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v----------------~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~ 66 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRV----------------GNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYS 66 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCC----------------CSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcc----------------cCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCC
Confidence 568899999999999999999743211 12237788777776766 7789999999998874
Q ss_pred ---HHHHHHhh--hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 ---KNMITGAA--QMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ---~~~~~~~~--~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..++. .+|++++|+|+++. .....++..+...++| +++|+||+|+...... . .+...+.+.++
T Consensus 67 ~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p-~ilv~NK~Dl~~~~~~-~---~~~~~l~~~lg-- 137 (272)
T 3b1v_A 67 PEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIP-VTIALNMIDVLDGQGK-K---INVDKLSYHLG-- 137 (272)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSC-EEEEEECHHHHHHTTC-C---CCHHHHHHHHT--
T ss_pred hHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCC-EEEEEEChhhCCcCCc-H---HHHHHHHHHcC--
Confidence 23344454 59999999999862 2334445556667999 9999999998642110 0 12223333344
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||++| .|+++|+++|.+.+.
T Consensus 138 ---~~vi~~SA~~g-----------~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 138 ---VPVVATSALKQ-----------TGVDQVVKKAAHTTT 163 (272)
T ss_dssp ---SCEEECBTTTT-----------BSHHHHHHHHHHSCT
T ss_pred ---CCEEEEEccCC-----------CCHHHHHHHHHHHHh
Confidence 47999999987 489999999987553
No 246
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=6.3e-15 Score=152.50 Aligned_cols=157 Identities=18% Similarity=0.071 Sum_probs=106.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++.... .+....++.+.....+..++ ..+.||||||+++|
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 88 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFP----------------PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 88 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC----------------TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC----------------CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 3567899999999999999999974311 11112233444444455555 46889999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
...+..+++.+|++|+|+|+++....+ ...++..+... ++| +++|+||+|+.+..... .++...+.+..+
T Consensus 89 ~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~~~~~~~-- 162 (201)
T 2ew1_A 89 RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI-TVLVGNKIDLAERREVS---QQRAEEFSEAQD-- 162 (201)
T ss_dssp HHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCSSC---HHHHHHHHHHHT--
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccC---HHHHHHHHHHcC--
Confidence 998888899999999999998744322 23444444443 456 89999999997522111 122333333333
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |++++++.|.+.+
T Consensus 163 ---~~~~~~Sa~~g~-----------gv~~l~~~l~~~i 187 (201)
T 2ew1_A 163 ---MYYLETSAKESD-----------NVEKLFLDLACRL 187 (201)
T ss_dssp ---CCEEECCTTTCT-----------THHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 468999999873 8888888876544
No 247
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=1.9e-14 Score=149.60 Aligned_cols=115 Identities=15% Similarity=0.088 Sum_probs=78.2
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
..+|+++|+.|+|||||+++|+........ .+ .-+.+.. ..+.+ ++..+.+.+|||||+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-------------~~---t~~~~~~---~~~~~--~~~~~~~~i~Dt~G~ 83 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVY-------------VP---TVFENYV---ADIEV--DGKQVELALWDTAGQ 83 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-----------------------CCEEE---EEEEE--TTEEEEEEEEECTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcC-------------CC---cccceEE---EEEEE--CCEEEEEEEEECCCc
Confidence 468999999999999999999753221100 00 0011111 11222 333578999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHH-HHHhhc--CCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVW-FQSQKY--KVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~-~~~~~~--~~p~iiviNK~D~~~ 143 (1021)
.+|...+..+++.+|++|+|+|+++....+.. ..| ..+... ++|+++|+||+|+..
T Consensus 84 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 84 EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143 (207)
T ss_dssp TTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGG
T ss_pred HHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhc
Confidence 99998888899999999999999875332222 223 333333 899999999999864
No 248
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.55 E-value=1.1e-14 Score=146.74 Aligned_cols=150 Identities=18% Similarity=0.145 Sum_probs=105.2
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh----
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY---- 727 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~---- 727 (1021)
..++++|.+++|||||+++|++..... .....|+|.+.....+..++..+.+|||||++++
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 69 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAI---------------VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 69 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSC---------------CCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcce---------------eeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHH
Confidence 467899999999999999999743111 1112355666656667777888999999998653
Q ss_pred ----HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 728 ----IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 728 ----~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
...+..+++.+|++++|+|+++....+..+++..+... ++| +|+|+||+|+.+... .+.+.
T Consensus 70 ~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~----------~~~~~- 137 (172)
T 2gj8_A 70 ERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLP-ITVVRNKADITGETL----------GMSEV- 137 (172)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCC-EEEEEECHHHHCCCC----------EEEEE-
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCC-EEEEEECccCCcchh----------hhhhc-
Confidence 12234567899999999999987655555555555443 577 899999999854110 11111
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
...+++++||++| .|++++++.|.+.+.
T Consensus 138 ----~~~~~~~~SA~~g-----------~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 138 ----NGHALIRLSARTG-----------EGVDVLRNHLKQSMG 165 (172)
T ss_dssp ----TTEEEEECCTTTC-----------TTHHHHHHHHHHHC-
T ss_pred ----cCCceEEEeCCCC-----------CCHHHHHHHHHHHhh
Confidence 1368999999987 389999999987654
No 249
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.55 E-value=3.2e-15 Score=151.74 Aligned_cols=163 Identities=20% Similarity=0.131 Sum_probs=100.4
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++..... ......+.... ....+......+.+|||||+++|.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~--------------~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~ 70 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT--------------DYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYN 70 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------------CB-CCCC-------CEEECCCC-CTTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhh
Confidence 456788999999999999999999743110 00011111110 011122223456799999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhHHH-------HHHHHHHHhh
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKELLD-------LVEMEIRELL 797 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~-------~~~~~~~~~l 797 (1021)
..+..+++.+|++++|+|+++....+.. .++..+... ++| +++|+||+|+.+...... ...++..++.
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~ 149 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK 149 (182)
T ss_dssp TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHH
T ss_pred hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhhcCcccccccccCCCCCHHHHHHHH
Confidence 8888888999999999999874433332 244444443 677 999999999875322100 0123344454
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+.+++ .+++++||++| .|++++++.|.+.+
T Consensus 150 ~~~~~----~~~~~~Sa~~~-----------~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 150 KLIGA----PAYIECSSKSQ-----------ENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHTC----SEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred HHcCC----CEEEEEECCCC-----------CCHHHHHHHHHHHH
Confidence 44442 37899999987 38999999887644
No 250
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.55 E-value=1.4e-15 Score=160.01 Aligned_cols=160 Identities=14% Similarity=0.016 Sum_probs=111.7
Q ss_pred cccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh
Q psy5021 647 TDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD 726 (1021)
Q Consensus 647 ~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~ 726 (1021)
...+.+.+.++|.+++|||||+++|+... +........|.|.......+...+..+.||||||+++
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGE--------------FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHH--------------HTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCC--------------CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH
Confidence 34566789999999999999999977532 1112234456777666666655567889999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
|...+..+++.+|++|+|+|+++....+. ..++..+... ++| +++|+||+|+.+.... .+...+.+..+
T Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~-----~~~~~~~~~~~-- 148 (221)
T 3gj0_A 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKVK-----AKSIVFHRKKN-- 148 (221)
T ss_dssp TSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTSSSCSSC-----GGGCCHHHHHT--
T ss_pred HhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCcccccccc-----HHHHHHHHHcC--
Confidence 98888889999999999999998544333 3333333332 677 9999999999752211 11222222333
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |+++++++|.+.+
T Consensus 149 ---~~~~~~Sa~~~~-----------gi~~l~~~l~~~l 173 (221)
T 3gj0_A 149 ---LQYYDISAKSNY-----------NFEKPFLWLARKL 173 (221)
T ss_dssp ---CEEEECBGGGTB-----------TTTHHHHHHHHHH
T ss_pred ---CEEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 579999999874 7777777776544
No 251
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=150.82 Aligned_cols=118 Identities=14% Similarity=0.022 Sum_probs=77.8
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..+..+|+++|+.|+|||||+++|+...- .. ++ ..|+.... ...+..++..+.+.+|||
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~--~~-----------~~-------~~t~~~~~-~~~~~~~~~~~~~~i~Dt 75 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGY--PT-----------EY-------IPTAFDNF-SAVVSVDGRPVRLQLCDT 75 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------------------------CCSSEEE-EEEEEETTEEEEEEEEEC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCC--CC-----------CC-------CCccccee-EEEEEECCEEEEEEEEEC
Confidence 34567899999999999999999973221 00 00 01111111 112222333578889999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhh--cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQK--YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~--~~~p~iiviNK~D~~~ 143 (1021)
||+.+|...+..+++.+|++|+|+|+++........ .| ..+.. .++|+++|+||+|+..
T Consensus 76 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 76 AGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp CCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred CCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 999999888888999999999999998764433332 23 33332 3899999999999864
No 252
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.55 E-value=2.3e-14 Score=148.77 Aligned_cols=118 Identities=14% Similarity=0.064 Sum_probs=80.6
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+...+|+++|..|+|||||+++|....-... + ..|+.... ...+..++..+.+.||||
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-------------~-------~~t~~~~~-~~~~~~~~~~~~l~i~Dt 83 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPEN-------------Y-------VPTVFENY-TASFEIDTQRIELSLWDT 83 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-------------C-------CCCSEEEE-EEEEESSSSEEEEEEEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCC-------------c-------CCccceeE-EEEEEECCEEEEEEEEeC
Confidence 45567899999999999999999975321100 0 01111111 112222344688999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHH-HHHhh--cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVW-FQSQK--YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~-~~~~~--~~~p~iiviNK~D~~~ 143 (1021)
||+.+|......+++.+|++|+|+|+++....... ..| ..+.. .++|+++|+||+|+..
T Consensus 84 ~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 84 SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp CCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred CCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 99999988888889999999999999875433332 334 33332 4789999999999853
No 253
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.55 E-value=7.6e-15 Score=149.23 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=104.7
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCChh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGHA 725 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~~ 725 (1021)
..+.+.+.++|.+++|||||+++|++..... ......+... ...+..++. .+.+|||||++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~--------------~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVD--------------DYDPTIEDSY---LKHTEIDNQWAILDVLDTAGQE 77 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCS--------------CCCTTCCEEE---EEEEEETTEEEEEEEEECCSCG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC--------------CCCCCcccee---EEEEEeCCcEEEEEEEECCCch
Confidence 4566788999999999999999999642110 0111112222 233344444 45679999999
Q ss_pred hhHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 726 DYIKNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 726 ~~~~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
+|...+..+++.+|++++|+|+++....+ ..+++..+.. .++| +++|+||+|+.+..... .++...+.+.+
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~v~---~~~~~~~~~~~ 153 (183)
T 3kkq_A 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHLRKVT---RDQGKEMATKY 153 (183)
T ss_dssp GGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTTCCSC---HHHHHHHHHHH
T ss_pred hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchhccCcC---HHHHHHHHHHh
Confidence 99888889999999999999998753322 2333333322 4677 89999999987522111 12334444444
Q ss_pred ccCCCceEEEEeccc-ccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 801 DFDGENTKIVIGSAL-LALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~-~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+ ++++++||+ ++ .|++++++.|.+.
T Consensus 154 ~-----~~~~~~Sa~~~~-----------~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 154 N-----IPYIETSAKDPP-----------LNVDKTFHDLVRV 179 (183)
T ss_dssp T-----CCEEEEBCSSSC-----------BSHHHHHHHHHHH
T ss_pred C-----CeEEEeccCCCC-----------CCHHHHHHHHHHH
Confidence 4 468999999 77 3888998888653
No 254
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.55 E-value=8.5e-15 Score=151.43 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=103.1
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++.... .+....++.+.....+..++ ..+.||||||+++|
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 87 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFK----------------QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERF 87 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC----------------------------CCEEEEEEEETTEEEEEEEECCTTHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC----------------ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhH
Confidence 3577899999999999999999974311 11112223333334444444 57899999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
...+..+++.+|++|+|+|+++....+. ..++..+... ++| +++|+||+|+.+..... ..+...+.+..+
T Consensus 88 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~-- 161 (200)
T 2o52_A 88 RSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIV-VILCGNKKDLDPEREVT---FLEASRFAQENE-- 161 (200)
T ss_dssp SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT--
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCcccccccC---HHHHHHHHHHcC--
Confidence 8888888999999999999987543222 3344434332 566 99999999986522110 122333444443
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |++++++.|.+.+
T Consensus 162 ---~~~~~~SA~~g~-----------gi~~l~~~l~~~i 186 (200)
T 2o52_A 162 ---LMFLETSALTGE-----------NVEEAFLKCARTI 186 (200)
T ss_dssp ---CEEEEECTTTCT-----------THHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 579999999873 7888888776543
No 255
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.55 E-value=6.8e-15 Score=147.33 Aligned_cols=154 Identities=15% Similarity=0.064 Sum_probs=103.1
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+.++|.+++|||||+++|++.... .+...+++.+.....+..++ ..+.+|||||+++|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 67 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFN----------------PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT 67 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCC----------------C-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCC----------------CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhh
Confidence 56788999999999999999974311 11122233333334444444 4688999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGE 805 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 805 (1021)
.+..+++.+|++++|+|+++.... ....++..+... ++| +++|+||+|+.+..... ++...+.+..+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~~~---- 138 (170)
T 1g16_A 68 ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVVTA----DQGEALAKELG---- 138 (170)
T ss_dssp CCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTCCSCH----HHHHHHHHHHT----
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCCcCccCH----HHHHHHHHHcC----
Confidence 888899999999999999875432 223444444443 566 99999999985422111 22333444444
Q ss_pred ceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 806 NTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 806 ~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |++++++.|.+.+
T Consensus 139 -~~~~~~Sa~~~~-----------gv~~l~~~l~~~~ 163 (170)
T 1g16_A 139 -IPFIESSAKNDD-----------NVNEIFFTLAKLI 163 (170)
T ss_dssp -CCEEECBTTTTB-----------SHHHHHHHHHHHH
T ss_pred -CeEEEEECCCCC-----------CHHHHHHHHHHHH
Confidence 468999999873 8888888887644
No 256
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.54 E-value=4.4e-15 Score=171.93 Aligned_cols=112 Identities=17% Similarity=0.248 Sum_probs=76.5
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-+|+|+|++|+|||||+|+|+.....+.. ...|+|.+.....+.+. ++.++||||||+.
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~-----------------~~~gtT~d~~~~~i~~~----g~~v~liDT~G~~ 283 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVT-----------------DLPGTTRDVVESQLVVG----GIPVQVLDTAGIR 283 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCS-----------------CCTTCCHHHHHHEEEET----TEEEEECC-----
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCccccc-----------------CCCCeeEEEEEEEEEEC----CEEEEEEECCccc
Confidence 36999999999999999999876543322 01233444433445566 7889999999998
Q ss_pred CcHHHHHH--------HhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 89 DFTIEVER--------SLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 89 ~f~~~~~~--------~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
++...+.. +++.+|++|+|+|++++...+...+++.+.. .|+++|+||+|+..
T Consensus 284 ~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~ 344 (462)
T 3geh_A 284 ETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVE 344 (462)
T ss_dssp ---------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSC
T ss_pred cchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCc
Confidence 77654433 5788999999999999988888888777653 79999999999864
No 257
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.54 E-value=4.5e-15 Score=151.61 Aligned_cols=157 Identities=20% Similarity=0.231 Sum_probs=110.8
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY 727 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~ 727 (1021)
.++...++++|.+++|||||+++|++.... .+...|+|.+.....+..++..+.+|||||+++|
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVY----------------IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEE----------------EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcc----------------ccCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 456678999999999999999999974311 1223466777777777778899999999999887
Q ss_pred H------HHHHHHhh--hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 728 I------KNMITGAA--QMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 728 ~------~~~~~~~~--~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
. ..+..++. .+|++++|+|++. ..+...++..+...+.| +++|+||+|+....... .+...+.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~ 140 (188)
T 2wjg_A 68 TANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGAN-LLLALNKMDLAKSLGIE----IDVDKLEKI 140 (188)
T ss_dssp SSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCC-EEEEEECHHHHHHTTCC----CCHHHHHHH
T ss_pred ccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCC-EEEEEEhhhccccccch----HHHHHHHHH
Confidence 3 22334443 4999999999875 34445566666667888 89999999986421110 122333333
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++ ++++++||+++ .+++++++.|.+.+.
T Consensus 141 ~~-----~~~~~~Sa~~~-----------~~v~~l~~~i~~~~~ 168 (188)
T 2wjg_A 141 LG-----VKVVPLSAAKK-----------MGIEELKKAISIAVK 168 (188)
T ss_dssp HT-----SCEEECBGGGT-----------BSHHHHHHHHHHHHT
T ss_pred hC-----CCeEEEEecCC-----------CCHHHHHHHHHHHHH
Confidence 33 46899999987 388899998877554
No 258
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.54 E-value=1.1e-14 Score=147.81 Aligned_cols=158 Identities=20% Similarity=0.139 Sum_probs=104.9
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
-+.+.+.++|.+++|||||+++|++..... ...+.| .....+..++..+.+|||||+++|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~---------------~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVT---------------TKPTIG----FNVETLSYKNLKLNVWDLGGQTSIR 76 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEE---------------ECSSTT----CCEEEEEETTEEEEEEEEC----CC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCc---------------cCCcCc----cceEEEEECCEEEEEEECCCCHhHH
Confidence 346788999999999999999999743210 011112 2233455567899999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..++..+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+... .+ ++.+.+......
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~i~~~~~~~~~~ 150 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-LLVFANKQDQPGALS-AS----EVSKELNLVELK 150 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTCCC-HH----HHHHHTTTTTCC
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCe-EEEEEECCCCCCCCC-HH----HHHHHhCccccc
Confidence 888888899999999999987643 333444444432 3566 999999999975311 12 233333222222
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
...++++++||++| .|+++++++|.+.+
T Consensus 151 ~~~~~~~~~Sa~~~-----------~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 151 DRSWSIVASSAIKG-----------EGITEGLDWLIDVI 178 (183)
T ss_dssp SSCEEEEEEBGGGT-----------BTHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCC-----------cCHHHHHHHHHHHH
Confidence 33468999999988 38899999887643
No 259
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.54 E-value=2.3e-14 Score=142.96 Aligned_cols=154 Identities=22% Similarity=0.198 Sum_probs=87.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKNM 731 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 731 (1021)
+.+.++|.+++|||||+++|++.... ......|.|.. ....+......+.+|||||+++|...+
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~ 66 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDG---------------PEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWLP 66 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC-------------------------CEEE-EEEEETTEEEEEEEEECC---------
T ss_pred EEEEEECCCCCCHHHHHHHHcCcccc---------------CCCCccccceE-EEEEECCEEEEEEEEECCCCccchhhh
Confidence 56788999999999999999864311 11223344442 222333334567899999999998888
Q ss_pred HHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCc
Q psy5021 732 ITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGEN 806 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 806 (1021)
..+++.+|++++|+|+++... .....++..+... ++| +++|+||+|+.+...... .+...+....+
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~----- 137 (166)
T 3q72_A 67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKSDLVRSREVSV---DEGRACAVVFD----- 137 (166)
T ss_dssp ------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSCCSCH---HHHHHHHHHTT-----
T ss_pred hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccccccccccCH---HHHHHHHHHhC-----
Confidence 888999999999999987433 2233344444443 677 899999999975322111 12233333333
Q ss_pred eEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 807 TKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 807 ~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||++| .|+++++++|.+.
T Consensus 138 ~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 161 (166)
T 3q72_A 138 CKFIETSAALH-----------HNVQALFEGVVRQ 161 (166)
T ss_dssp CEEEECBGGGT-----------BSHHHHHHHHHHH
T ss_pred CcEEEeccCCC-----------CCHHHHHHHHHHH
Confidence 58999999988 3889999888653
No 260
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.54 E-value=5.7e-15 Score=154.89 Aligned_cols=159 Identities=19% Similarity=0.070 Sum_probs=103.3
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC-eEEEEEecCChhhhH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN-KHYAHVDCPGHADYI 728 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-~~i~liDtpG~~~~~ 728 (1021)
+.+.+.++|.+++|||||+++|++.... .......|.+............ ..+.||||||+++|.
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 75 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFE--------------KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKA 75 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTT--------------CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhc
Confidence 4577889999999999999999974311 1111222333322222111112 568999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQTR-EHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt~-e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..++..+|++|+|+|++++...+.. +++..+... ++| +++|+||+|+.+.... ...+...+.+..+
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~--- 148 (218)
T 4djt_A 76 VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAP-IVVCANKIDIKNRQKI---SKKLVMEVLKGKN--- 148 (218)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSC-EEEEEECTTCC----C---CHHHHHHHTTTCC---
T ss_pred hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccc---CHHHHHHHHHHcC---
Confidence 8888889999999999999986543332 333433333 577 9999999999753211 1233444444443
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |+++++++|.+.+
T Consensus 149 --~~~~~~Sa~~g~-----------gv~~l~~~l~~~~ 173 (218)
T 4djt_A 149 --YEYFEISAKTAH-----------NFGLPFLHLARIF 173 (218)
T ss_dssp --CEEEEEBTTTTB-----------TTTHHHHHHHHHH
T ss_pred --CcEEEEecCCCC-----------CHHHHHHHHHHHH
Confidence 579999999874 6777777766543
No 261
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.54 E-value=3.4e-14 Score=144.70 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=80.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+...+|+++|+.|+|||||+++|+...-... + ..|+.... ...+..++..+.+.+||||
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-------------~-------~~t~~~~~-~~~~~~~~~~~~~~i~Dt~ 63 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPEN-------------Y-------VPTVFENY-TASFEIDTQRIELSLWDTS 63 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-------------C-------CCCSEEEE-EEEEECSSCEEEEEEEEEC
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCC-------------C-------CCccceeE-EEEEEECCEEEEEEEEECC
Confidence 4567899999999999999999975321100 0 00111111 1122223446789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHH-HHH-HHHhh--cCCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE-TVW-FQSQK--YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~-~~~~~--~~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++|+|+|+++....... ..| ..+.. .++|+++|+||+|+..
T Consensus 64 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 64 GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp CSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred CChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 9999988888889999999999999875433332 334 33332 4799999999999853
No 262
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.53 E-value=2.7e-14 Score=145.38 Aligned_cols=158 Identities=17% Similarity=0.111 Sum_probs=104.9
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHA 725 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~ 725 (1021)
.++.+.+.++|.+++|||||+++|++..... ......+. .....+..++ ..+.||||||++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~---~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVE--------------DYEPTKAD---SYRKKVVLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCC--------------SCCTTCCE---EEEEEEEETTEEEEEEEEECCCTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCC--------------cCCCccce---EEEEEEEECCEEEEEEEEECCCCc
Confidence 3456788999999999999999999743110 00011111 1122333444 468899999999
Q ss_pred hhHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 726 DYIKNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 726 ~~~~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
+|...+..+++.+|++++|+|+++....+ ...++..+.. .++| +++|+||+|+.+.... ...++.++++..
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~ 153 (187)
T 2a9k_A 78 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV---SVEEAKNRAEQW 153 (187)
T ss_dssp CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGGGGCCS---CHHHHHHHHHHT
T ss_pred ccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCcc---CHHHHHHHHHHc
Confidence 99999999999999999999998743322 2233333333 2677 9999999998753211 112344444444
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+ ++++++||+++ .++++++++|.+.+
T Consensus 154 ~-----~~~~~~Sa~~~-----------~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 154 N-----VNYVETSAKTR-----------ANVDKVFFDLMREI 179 (187)
T ss_dssp T-----CEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred C-----CeEEEeCCCCC-----------CCHHHHHHHHHHHH
Confidence 4 47999999987 38888888887643
No 263
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.53 E-value=1.2e-13 Score=140.74 Aligned_cols=110 Identities=16% Similarity=0.128 Sum_probs=75.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+.-+|+++|..|+|||||+++|+...-... +.+ |.......+.+ ++..+.+.+||||
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-------------~~~-------t~~~~~~~~~~--~~~~~~l~i~Dt~ 75 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQE-------------ESP-------EGGRFKKEIVV--DGQSYLLLIRDEG 75 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCC-------------CCT-------TCEEEEEEEEE--TTEEEEEEEEECS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCC-------------cCC-------CcceEEEEEEE--CCEEEEEEEEECC
Confidence 3456899999999999999999974321100 000 11111112222 2335788999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh----cCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~----~~~p~iiviNK~D~~ 142 (1021)
|+.+|. +++.+|++++|+|+++....+....| ..+.. .++|+++++||+|+.
T Consensus 76 G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 76 GPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp SSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred CChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 999986 78889999999999986554443334 44433 478999999999984
No 264
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.53 E-value=9.3e-15 Score=147.96 Aligned_cols=157 Identities=15% Similarity=0.105 Sum_probs=103.6
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~ 726 (1021)
.+.+.+.++|.+++|||||+++|++.... .......+... ...+..++ ..+.||||||+++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--------------~~~~~t~~~~~---~~~~~~~~~~~~~~~~Dt~G~~~ 69 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFV--------------SDYDPTIEDSY---TKICSVDGIPARLDILDTAGQEE 69 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCC--------------SSCCTTCCEEE---EEEEEETTEEEEEEEEECCCTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCc--------------cccCCCcCceE---EEEEEECCEEEEEEEEECCCchh
Confidence 34578899999999999999999974211 01111122222 13344444 4678999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHH-HH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMP-QTREHILLA-RQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~-~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
|...+..++..+|++++|+|+++.... ....++..+ .. .++| +++|+||+|+.+...... .+...+....+
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~~ 145 (181)
T 2fn4_A 70 FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP-VVLVGNKADLESQRQVPR---SEASAFGASHH 145 (181)
T ss_dssp TSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGGGGCCSCH---HHHHHHHHHTT
T ss_pred hHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccCH---HHHHHHHHHcC
Confidence 988888889999999999999874322 222333333 22 3677 999999999975322111 22233333333
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| .|+++++++|.+.+
T Consensus 146 -----~~~~~~Sa~~~-----------~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 146 -----VAYFEASAKLR-----------LNVDEAFEQLVRAV 170 (181)
T ss_dssp -----CEEEECBTTTT-----------BSHHHHHHHHHHHH
T ss_pred -----CeEEEecCCCC-----------CCHHHHHHHHHHHH
Confidence 57999999987 38888888887644
No 265
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=8.4e-15 Score=150.54 Aligned_cols=159 Identities=18% Similarity=0.071 Sum_probs=106.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++..... ......+... ...+..++ ..+.+|||||+++|
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~---~~~~~~~~~~~~~~i~D~~G~~~~ 79 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPE--------------EYVPTVFDHY---AVSVTVGGKQYLLGLYDTAGQEDY 79 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCC--------------SCCCSSCCCE---EEEEESSSCEEEEEEECCCCSSSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccccee---EEEEEECCEEEEEEEEECCCCcch
Confidence 45788999999999999999999742110 0001111111 22333444 57889999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHH-H-HHHHHHHHc--CCCeEEEEEeeccccchhhHHHH---------HHHHHH
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQT-R-EHILLARQV--GVPNIVVFLNKADCVQDKELLDL---------VEMEIR 794 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt-~-e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~---------~~~~~~ 794 (1021)
...+..+++.+|++++|+|+++....+. . .++..+... ++| +++|+||+|+.+.....+. ..++..
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 158 (194)
T 2atx_A 80 DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ 158 (194)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHH
T ss_pred hHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhcccccchhhcccccCcccCHHHHH
Confidence 8888888899999999999987543322 2 344555554 777 9999999999763211110 113344
Q ss_pred HhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 795 ELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 795 ~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++.+.+++ .+++++||++| .|+++++++|.+.
T Consensus 159 ~~~~~~~~----~~~~~~Sa~~g-----------~gi~~l~~~l~~~ 190 (194)
T 2atx_A 159 KLAKEIGA----CCYVECSALTQ-----------KGLKTVFDEAIIA 190 (194)
T ss_dssp HHHHHHTC----SCEEECCTTTC-----------TTHHHHHHHHHHH
T ss_pred HHHHHcCC----cEEEEeeCCCC-----------CCHHHHHHHHHHH
Confidence 45544443 36899999987 3889999888754
No 266
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.53 E-value=1.7e-14 Score=145.20 Aligned_cols=157 Identities=19% Similarity=0.167 Sum_probs=96.8
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh--H
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY--I 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~--~ 728 (1021)
.+.+.++|.+++|||||+++|++..... .....|.+.......+......+.+|||||++++ .
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 68 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERD---------------LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKS 68 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC--------------------CCCSSSSEEEEEEEETTEEEEEEEECCC-------C
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCcc---------------ccCccccceeEEEEEECCEEEEEEEEecCCCCccchh
Confidence 4678899999999999999999743211 1112355544444333322346789999999884 3
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
.....+++.+|++++|+|+++.... ...+++..+... ++| +++|+||+|+.+...... ++...+....+
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~~~~~v~~---~~~~~~~~~~~-- 142 (175)
T 2nzj_A 69 WSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKADLARCREVSV---EEGRACAVVFD-- 142 (175)
T ss_dssp HHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTCTTTCCSCH---HHHHHHHHHHT--
T ss_pred hhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhhccccccCH---HHHHHHHHHcC--
Confidence 3444556789999999999874332 223444444443 677 999999999975321111 12233333333
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| .|+++++++|.+.+
T Consensus 143 ---~~~~~~Sa~~g-----------~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 143 ---CKFIETSATLQ-----------HNVAELFEGVVRQL 167 (175)
T ss_dssp ---SEEEECBTTTT-----------BSHHHHHHHHHHHH
T ss_pred ---CeEEEEecCCC-----------CCHHHHHHHHHHHH
Confidence 47999999987 38889998887644
No 267
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.53 E-value=9.5e-15 Score=151.69 Aligned_cols=119 Identities=12% Similarity=0.093 Sum_probs=60.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccC--ceeEEEEcC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKF--KYMINIIDT 84 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~--~~~i~liDt 84 (1021)
+..+|+++|+.|+|||||+++|+........ + ....+.++.....+.+. +. .+.+.+|||
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----------~-----~~~t~~~~~~~~~~~~~--~~~~~~~~~l~Dt 80 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLK-----------D-----YAMTSGVEVVVAPVTIP--DTTVSVELFLLDT 80 (208)
T ss_dssp EEEEEEEC--------------------------------------------------CEEEECT--TSSEEEEEEEEET
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccC-----------C-----CCCccceEEEEEEEEEC--CcccEEEEEEEEC
Confidence 4468999999999999999999743111110 0 00011111222223333 33 578999999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh------cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK------YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~------~~~p~iiviNK~D~~~ 143 (1021)
||+.+|...+..+++.+|++|+|+|++++........| ..+.. .++|+++|+||+|+..
T Consensus 81 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 81 AGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp TTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred CCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 99999999999999999999999999886543333333 33332 5889999999999853
No 268
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.53 E-value=5.2e-15 Score=150.16 Aligned_cols=156 Identities=18% Similarity=0.133 Sum_probs=102.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++.... .......+.+. ...+..++ ..+.||||||+++|
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFV--------------DSYDPTIENTF---TKLITVNGQEYHLQLVDTAGQDEY 67 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC--------------SCCCTTCCEEE---EEEEEETTEEEEEEEEECCCCCTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--------------CCCCCCccccE---EEEEEECCEEEEEEEEeCCCchhh
Confidence 4567889999999999999999964311 11112223333 22334444 56789999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHH----HcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLAR----QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~----~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
...+..+++.+|++++|+|+++....+. ..++..+. ..++| +++|+||+|+.+..... .++...+.+.++
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 142 (181)
T 3t5g_A 68 SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMERVIS---YEEGKALAESWN- 142 (181)
T ss_dssp CCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC-EEEEEECTTCTTTCCSC---HHHHHHHHHHTT-
T ss_pred hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcceec---HHHHHHHHHHhC-
Confidence 7777778889999999999987433222 22222222 23677 99999999986522111 123444555454
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||+++ .|++++++.|.+.+
T Consensus 143 ----~~~~~~Sa~~~-----------~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 143 ----AAFLESSAKEN-----------QTAVDVFRRIILEA 167 (181)
T ss_dssp ----CEEEECCTTSH-----------HHHHHHHHHHHHHH
T ss_pred ----CcEEEEecCCC-----------CCHHHHHHHHHHHH
Confidence 47999999987 48888888887654
No 269
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.53 E-value=1e-14 Score=147.89 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=94.2
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC---CeEEEEEecCChhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE---NKHYAHVDCPGHAD 726 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~---~~~i~liDtpG~~~ 726 (1021)
+.+.+.++|.+++|||||+++|++.... .+....++.+.....+..+ ...+.+|||||+++
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 70 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYS----------------QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 70 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC----------------TTC---CCCSCEEEEECCSSSCCEEEEEECCC----
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCC----------------cccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH
Confidence 3467889999999999999999974311 1111122223333334433 35789999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ-------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~-------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
|...+..+++.+|++|+|+|+++....+. ..++..+.. .++| +++|+||+|+.+..... ...+...+.+
T Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~v--~~~~~~~~~~ 147 (182)
T 1ky3_A 71 FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDAEESKKIV--SEKSAQELAK 147 (182)
T ss_dssp ------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTSCGGGCCS--CHHHHHHHHH
T ss_pred hhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCc-EEEEEECCccccccccC--CHHHHHHHHH
Confidence 99888888899999999999987543222 333333322 4667 99999999996422110 0122333333
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
... ..+++++||++| .|+++++++|.+.
T Consensus 148 ~~~----~~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 148 SLG----DIPLFLTSAKNA-----------INVDTAFEEIARS 175 (182)
T ss_dssp HTT----SCCEEEEBTTTT-----------BSHHHHHHHHHHH
T ss_pred hcC----CCeEEEEecCCC-----------CCHHHHHHHHHHH
Confidence 221 357899999987 3888898888653
No 270
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.53 E-value=6.7e-14 Score=144.02 Aligned_cols=119 Identities=14% Similarity=0.068 Sum_probs=77.5
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+...+|+++|..|+|||||+++|......... ..+++.......+.+ ++..+.+.+|||
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~--~~~~~~l~i~Dt 79 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH------------------EPENPEDTYERRIMV--DKEEVTLVVYDI 79 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGG------------------TTTSCTTEEEEEEEE--TTEEEEEEEECC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccC------------------CCCcccceEEEEEEE--CCEEEEEEEEec
Confidence 345679999999999999999998422221110 111222211122223 334678899999
Q ss_pred CCCCCcHH-HHHHHhhccCeEEEEEeCCCCCchhHH-HHHHHHhh----cCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDFTI-EVERSLRVLDGAVIIICASSGIQPQTE-TVWFQSQK----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f~~-~~~~~l~~~D~~ilvvda~~g~~~~t~-~~~~~~~~----~~~p~iiviNK~D~~~ 143 (1021)
||+.+|.. ....+++.+|++|+|+|+++....... ..+..+.. .++|+++|+||+|+..
T Consensus 80 ~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 80 WEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp CCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred CCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 99998865 566678899999999999874332222 22233332 4799999999999863
No 271
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=3.6e-14 Score=146.27 Aligned_cols=158 Identities=16% Similarity=0.090 Sum_probs=104.3
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
..+.+.++|.+++|||||+++|++..... ......+.+.. ....+......+.||||||+++|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~ 71 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD--------------TYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPA 71 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC--------------TTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC--------------cccCcccccee-EEEEECCEEEEEEEEeCCChHHhHH
Confidence 34678999999999999999999743110 00111122211 1122222335788999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH-----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQ-----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~-----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
.+..++..+|++++|+|+++.... ....++..+.. .++| +++|+||+|+.+..... .+...+...++
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~~~-- 144 (199)
T 2gf0_A 72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQREVDT----REAQAVAQEWK-- 144 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSSCSSCH----HHHHHHHHHHT--
T ss_pred HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCCccccCH----HHHHHHHHHhC--
Confidence 999999999999999999874322 22233333333 2567 99999999997522111 22233333343
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||++| .|+++++++|.+.+.
T Consensus 145 ---~~~~~~Sa~~~-----------~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 145 ---CAFMETSAKMN-----------YNVKELFQELLTLET 170 (199)
T ss_dssp ---CEEEECBTTTT-----------BSHHHHHHHHHHHCS
T ss_pred ---CeEEEEecCCC-----------CCHHHHHHHHHHHHh
Confidence 47899999987 388999999887654
No 272
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.53 E-value=1.5e-14 Score=150.96 Aligned_cols=155 Identities=15% Similarity=0.062 Sum_probs=105.2
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++.... .+...+++.+.....+..++ ..+.||||||+++|.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 83 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFN----------------PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFR 83 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCC----------------CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC----------------cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH
Confidence 467889999999999999999974311 11122333444444555555 578999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..++..+|++|+|+|+++.... ....++..+... ++| +++|+||+|+....... .+...+.+.++
T Consensus 84 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~~~--- 155 (213)
T 3cph_A 84 TITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVVTA----DQGEALAKELG--- 155 (213)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSE-EEEEEECTTCSSCCSCH----HHHHHHHHHHT---
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccCH----HHHHHHHHHcC---
Confidence 8888899999999999999874332 223444444443 566 99999999995322111 22333444444
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||+++. ++++++++|.+.+
T Consensus 156 --~~~~~~Sa~~~~-----------gi~~l~~~l~~~~ 180 (213)
T 3cph_A 156 --IPFIESSAKNDD-----------NVNEIFFTLAKLI 180 (213)
T ss_dssp --CCEEECBTTTTB-----------SSHHHHHHHHHHH
T ss_pred --CEEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 368999999873 6777777765533
No 273
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.53 E-value=1.8e-14 Score=144.16 Aligned_cols=154 Identities=19% Similarity=0.132 Sum_probs=93.7
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~~ 729 (1021)
+.+.++|.+++|||||+++|++...... ... ..+.+.....+..++ ..+.+|||||+++|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~--------------~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 66 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHA--------------HEM--ENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG 66 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEETTEEEEEEEECCCCC-----
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCccc--------------ccC--CCcCCeeeEEEEECCeEEEEEEEECCCccccch
Confidence 3567889999999999999986431111 111 112333333344444 5677999999999876
Q ss_pred -HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 730 -NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 730 -~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
....+++.+|++++|+|+++... ....+++..+... ++| +++|+||+|+.+..... .++...+.+..+
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-- 140 (169)
T 3q85_A 67 WLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSREVS---LEEGRHLAGTLS-- 140 (169)
T ss_dssp ---CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCGGGCCSC---HHHHHHHHHHTT--
T ss_pred hhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCC-EEEEeeCcchhhcccCC---HHHHHHHHHHcC--
Confidence 44555788999999999987432 2233444444433 677 99999999987522211 123344444444
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||++| .|++++++.|.+.
T Consensus 141 ---~~~~~~Sa~~~-----------~~v~~l~~~l~~~ 164 (169)
T 3q85_A 141 ---CKHIETSAALH-----------HNTRELFEGAVRQ 164 (169)
T ss_dssp ---CEEEECBTTTT-----------BSHHHHHHHHHHH
T ss_pred ---CcEEEecCccC-----------CCHHHHHHHHHHH
Confidence 47899999987 3888999888654
No 274
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.52 E-value=1.7e-14 Score=149.20 Aligned_cols=158 Identities=16% Similarity=0.107 Sum_probs=105.3
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
..+.+.++|.+++|||||+++|++...... .....+.+.. ..+..++ ..+.||||||+++|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~---~~~~~~~~~~~l~i~Dt~G~~~~ 86 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV--------------YVPTVFENYI---ADIEVDGKQVELALWDTAGQEDY 86 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSS--------------CCCSSCCCCE---EEEEETTEEEEEEEECCCCSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcc--------------cCCcccceEE---EEEEECCEEEEEEEEECCCchhH
Confidence 456789999999999999999997432110 0011111111 1233344 47889999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HHHHH
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EMEIR 794 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~ 794 (1021)
...+..+++.+|++++|+|+++....+. ..++..+... ++| +++|+||+|+.+.....+.+ .++..
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 165 (201)
T 2gco_A 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGR 165 (201)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHH
T ss_pred HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhhcCccchhhhcccccCcCCHHHHH
Confidence 8888888899999999999987433222 2344455554 778 99999999998643222111 12334
Q ss_pred HhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 795 ELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 795 ~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+.+.+++ .+++++||++| .|++++++.|.+
T Consensus 166 ~~~~~~~~----~~~~~~SA~~g-----------~gi~~l~~~i~~ 196 (201)
T 2gco_A 166 DMANRISA----FGYLECSAKTK-----------EGVREVFEMATR 196 (201)
T ss_dssp HHHHHTTC----SEEEECCTTTC-----------TTHHHHHHHHHH
T ss_pred HHHHhCCC----cEEEEeeCCCC-----------CCHHHHHHHHHH
Confidence 44444443 37899999987 388999988865
No 275
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.52 E-value=4.7e-14 Score=147.53 Aligned_cols=116 Identities=12% Similarity=0.077 Sum_probs=80.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
...+|+++|..|+|||||+++|+...-... +. .|+.... ......++..+.+.+|||||
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~-------------~~-------~t~~~~~-~~~~~~~~~~~~l~i~Dt~G 84 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPET-------------YV-------PTVFENY-TACLETEEQRVELSLWDTSG 84 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSS-------------CC-------CCSEEEE-EEEEEC--CEEEEEEEEECC
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCC-------------cC-------CeeeeeE-EEEEEECCEEEEEEEEECCC
Confidence 456899999999999999999975321110 00 0111111 11122233468899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhH-HHHH-HHHhh--cCCCEEEEEeCcCCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVW-FQSQK--YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t-~~~~-~~~~~--~~~p~iiviNK~D~~~ 143 (1021)
+.+|...+..+++.+|++|+|+|+++...... ...| ..+.. .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 85 SPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp SGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred CHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 99999888899999999999999998654443 3334 33333 3799999999999863
No 276
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.52 E-value=4.9e-14 Score=147.40 Aligned_cols=117 Identities=15% Similarity=0.045 Sum_probs=64.9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..+|+++|+.|+|||||+++|+...-. . ++ ..|+.... ...+..++..+.+.+|||||
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~--~-----------~~-------~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G 91 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP--E-----------SY-------TPTVFERY-MVNLQVKGKPVHLHIWDTAG 91 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------------------------CCCCCEEE-EEEEEETTEEEEEEEEEC--
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--C-----------CC-------CCccceeE-EEEEEECCEEEEEEEEECCC
Confidence 4578999999999999999999732110 0 00 00111111 11122233467899999999
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhh--cCCCEEEEEeCcCCCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQK--YKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~--~~~p~iiviNK~D~~~~ 144 (1021)
+.+|...+..+++.+|++|+|+|+++....+... .| ..+.. .++|+++|+||+|+...
T Consensus 92 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 92 QDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp -------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSC
T ss_pred chhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhcc
Confidence 9999999999999999999999998754333322 23 23322 37999999999998643
No 277
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.52 E-value=4.9e-15 Score=153.33 Aligned_cols=159 Identities=19% Similarity=0.158 Sum_probs=103.8
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++...... .....+.+. .....+......+.||||||+++|.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~ 86 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEG--------------YDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYS 86 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSC--------------CCCCSEEEE-EEEEC----CEEEEEEEECCCCTTC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCC--------------CCCccceEE-EEEEEECCEEEEEEEEECCCccchH
Confidence 4567889999999999999999997432110 011112222 2222333445778999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..+++.+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+.+...... .+...+.+..+
T Consensus 87 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~~-- 160 (201)
T 3oes_A 87 ILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLSPEREVQA---VEGKKLAESWG-- 160 (201)
T ss_dssp CCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCC-EEEEEECTTCGGGCCSCH---HHHHHHHHHHT--
T ss_pred HHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCccccccCH---HHHHHHHHHhC--
Confidence 888888899999999999987443222 233333322 2677 999999999875322111 22333444444
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| .|++++++.|.+.+
T Consensus 161 ---~~~~~~Sa~~~-----------~~v~~l~~~l~~~i 185 (201)
T 3oes_A 161 ---ATFMESSAREN-----------QLTQGIFTKVIQEI 185 (201)
T ss_dssp ---CEEEECCTTCH-----------HHHHHHHHHHHHHH
T ss_pred ---CeEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 47999999988 38888888887654
No 278
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.52 E-value=3.7e-14 Score=147.06 Aligned_cols=159 Identities=18% Similarity=0.119 Sum_probs=106.2
Q ss_pred cccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCCh
Q psy5021 647 TDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGH 724 (1021)
Q Consensus 647 ~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~ 724 (1021)
...+.+.+.++|.+++|||||+++|++..... ......+.+ ....+..++ ..+.||||||+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~---~~~~~~~~~~~~~~~l~Dt~G~ 72 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVE--------------DYEPTKADS---YRKKVVLDGEEVQIDILDTAGQ 72 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCTTCCEE---EEEEEEETTEEEEEEEEECCCT
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCC--------------CCCCccceE---EEEEEEECCEEEEEEEEcCCCh
Confidence 34556788999999999999999999743110 011111221 123344444 47889999999
Q ss_pred hhhHHHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 725 ADYIKNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 725 ~~~~~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
++|...+..++..+|++++|+|+++.... ....++..+... ++| +++|+||+|+.+.... ..+++..+++.
T Consensus 73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~ 148 (206)
T 2bov_A 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV---SVEEAKNRAEQ 148 (206)
T ss_dssp TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCGGGCCS---CHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCccccccc---cHHHHHHHHHH
Confidence 99999999999999999999999874332 223333333332 677 9999999999753211 11233444444
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+ ++++++||++|. |+++++++|.+.+
T Consensus 149 ~~-----~~~~~~Sa~~g~-----------gi~~l~~~l~~~i 175 (206)
T 2bov_A 149 WN-----VNYVETSAKTRA-----------NVDKVFFDLMREI 175 (206)
T ss_dssp HT-----CEEEEECTTTCT-----------THHHHHHHHHHHH
T ss_pred hC-----CeEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 44 479999999873 7888888876544
No 279
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.52 E-value=1.1e-13 Score=152.82 Aligned_cols=148 Identities=20% Similarity=0.179 Sum_probs=104.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee-CCeEEEEEecCChhhh---
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES-ENKHYAHVDCPGHADY--- 727 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~-~~~~i~liDtpG~~~~--- 727 (1021)
+.+.++|.+++|||||+++|++... .......|.|++.....+.. ++..+.+|||||+++|
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~---------------~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 68 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYS---------------AFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMEN 68 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCC---------------TGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC---------------CccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhh
Confidence 4567899999999999999987421 11223446677766666654 5678999999999999
Q ss_pred --HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHH-HHHHHc-----CCCeEEEEEeeccccchhhHH---HHHHHHHHHh
Q psy5021 728 --IKNMITGAAQMDGAILVCSAVDGPMPQTREHI-LLARQV-----GVPNIVVFLNKADCVQDKELL---DLVEMEIREL 796 (1021)
Q Consensus 728 --~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l-~~~~~~-----~ip~iIvviNK~Dl~~~~~~~---~~~~~~~~~~ 796 (1021)
...+..+++.+|++|+|+|+++....+..+.| ..+..+ ++| +++|+||+|+.+.+.+. .....++.++
T Consensus 69 ~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl~~~~~r~~~~~v~~~~~~~~ 147 (307)
T 3r7w_A 69 YFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDLVQLDKREELFQIMMKNLSET 147 (307)
T ss_dssp HHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEecccccchhhhhHHHHHHHHHHHHH
Confidence 44556667899999999999987654444332 222222 677 99999999998632221 2444667777
Q ss_pred hhccccCCCceEEEEeccccc
Q psy5021 797 LTEYDFDGENTKIVIGSALLA 817 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~~~ 817 (1021)
.+.+|+. +++++++||++.
T Consensus 148 ~~~~g~~--~~~~~~tSa~~~ 166 (307)
T 3r7w_A 148 SSEFGFP--NLIGFPTSIWDE 166 (307)
T ss_dssp HHTTTCC--SCEEEECCTTSS
T ss_pred HHHcCCC--CeEEEEeeecCC
Confidence 7777652 368999999963
No 280
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.52 E-value=1e-14 Score=151.47 Aligned_cols=157 Identities=15% Similarity=0.040 Sum_probs=104.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++..... ....+++.+.....+..++ ..+.||||||+++|
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 70 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSN----------------QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 70 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS----------------SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC----------------CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 34678899999999999999999743110 1112233344444444443 57899999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ-------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~-------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
...+..+++.+|++|+|+|++++...+. ..++..+.. .++| +++|+||+|+.+..... ++...+.+.
T Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~ 145 (207)
T 1vg8_A 71 QSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDLENRQVAT----KRAQAWCYS 145 (207)
T ss_dssp SCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTSSCCCSCH----HHHHHHHHH
T ss_pred HHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCCcccccCH----HHHHHHHHh
Confidence 8888888899999999999987543222 223332222 3667 89999999997422111 222333321
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
. ..++++++||++|. |+++++++|.+.+
T Consensus 146 ~----~~~~~~~~Sa~~g~-----------gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 146 K----NNIPYFETSAKEAI-----------NVEQAFQTIARNA 173 (207)
T ss_dssp T----TSCCEEECBTTTTB-----------SHHHHHHHHHHHH
T ss_pred c----CCceEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 1 13578999999873 7888888876544
No 281
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.52 E-value=7.7e-15 Score=153.18 Aligned_cols=161 Identities=17% Similarity=0.096 Sum_probs=105.1
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~ 726 (1021)
.+.+.+.++|.+++|||||+++|++..... ......|... ...+..++ ..+.||||||+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~--------------~~~~t~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPT--------------DYIPTVFDNF---SANVAVDGQIVNLGLWDTAGQED 69 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCS--------------SCCCSSCCCE---EEEEECSSCEEEEEEECCCCCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCc--------------cCCCccceeE---EEEEEECCEEEEEEEEECCCcHH
Confidence 345788999999999999999999743110 0011112111 12233333 5788999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHH-H-HHHHHHHHc--CCCeEEEEEeeccccchhhHHHH-----HHHHHHHhh
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQT-R-EHILLARQV--GVPNIVVFLNKADCVQDKELLDL-----VEMEIRELL 797 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~-e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~-----~~~~~~~~l 797 (1021)
|...+..+++.+|++|+|+|+++....+. . .++..+... ++| +++|+||+|+.+....... ...+..++.
T Consensus 70 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~ 148 (212)
T 2j0v_A 70 YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLRDDKGYLADHTNVITSTQGEELR 148 (212)
T ss_dssp CCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH
T ss_pred HHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHhhhCccccccccCCCCHHHHHHHH
Confidence 98888888999999999999987543322 2 344455444 778 9999999998753221000 123344455
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+.++. .+++++||++| +|++++++.|.+.+
T Consensus 149 ~~~~~----~~~~~~Sa~~g-----------~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 149 KQIGA----AAYIECSSKTQ-----------QNVKAVFDTAIKVV 178 (212)
T ss_dssp HHHTC----SEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred HHcCC----ceEEEccCCCC-----------CCHHHHHHHHHHHH
Confidence 55543 47899999987 38888888887654
No 282
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.52 E-value=9.2e-14 Score=141.95 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=74.2
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|..|+|||||+++|+...-.. ++. .|+.... ...+..++..+.+.+||||
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~-------------~~~-------~t~~~~~-~~~~~~~~~~~~l~i~Dt~ 77 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFIS-------------EYD-------PNLEDTY-SSEETVDHQPVHLRVMDTA 77 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCS-------------CCC-------TTCCEEE-EEEEEETTEEEEEEEEECC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCc-------------ccC-------CCcccee-eEEEEECCEEEEEEEEECC
Confidence 345789999999999999999997533110 000 0111111 1112223346789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh------cCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK------YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~------~~~p~iiviNK~D~~ 142 (1021)
|+.+|.. +..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 78 G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 78 DLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp C---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred CCCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 9998875 36788999999999999875433333323 33322 589999999999984
No 283
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.52 E-value=5.6e-15 Score=151.91 Aligned_cols=160 Identities=14% Similarity=0.058 Sum_probs=106.5
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~ 726 (1021)
.+.+.+.++|.+++|||||+++|++..... ......+.+. ...+..++ ..+.||||||+++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~--------------~~~~t~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~ 83 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPT--------------AYVPTVFENF---SHVMKYKNEEFILHLWDTAGQEE 83 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCS--------------SCCCCSEEEE---EEEEEETTEEEEEEEEEECCSGG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCC--------------ccCCeeeeee---EEEEEECCEEEEEEEEECCCcHH
Confidence 456788999999999999999999743110 0011112221 12233444 4568999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
|...+..+++.+|++++|+|+++...... ..++..+... ++| +++|+||+|+.+...+ ....++..++.+.+++
T Consensus 84 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~ 161 (194)
T 3reg_A 84 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK-TVLVGLKVDLRKDGSD-DVTKQEGDDLCQKLGC 161 (194)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSE-EEEEEECGGGCCTTTT-CCCHHHHHHHHHHHTC
T ss_pred HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccCCCC-cccHHHHHHHHHhcCC
Confidence 98888888999999999999998543333 2333444443 566 9999999999752111 1112344455555554
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..++++||++| .|++++++.|.+.+
T Consensus 162 ----~~~~~~Sa~~~-----------~gi~~l~~~l~~~i 186 (194)
T 3reg_A 162 ----VAYIEASSVAK-----------IGLNEVFEKSVDCI 186 (194)
T ss_dssp ----SCEEECBTTTT-----------BSHHHHHHHHHHHH
T ss_pred ----CEEEEeecCCC-----------CCHHHHHHHHHHHH
Confidence 13899999987 38889988887654
No 284
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.52 E-value=1.9e-14 Score=147.24 Aligned_cols=157 Identities=15% Similarity=0.089 Sum_probs=106.6
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++.... ....+.| .....+..++..+.+|||||+++|..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~---------------~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~~ 81 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV---------------TTVPTVG----VNLETLQYKNISFEVWDLGGQTGVRP 81 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE---------------EECSSTT----CCEEEEEETTEEEEEEEECCSSSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC---------------CcCCCCc----eEEEEEEECCEEEEEEECCCCHhHHH
Confidence 4578899999999999999999864311 0011122 22334556688999999999999887
Q ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..+++.+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+... .+++.. .+.......
T Consensus 82 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~~~~~----~~~~~~~~~ 155 (189)
T 2x77_A 82 YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL-LLIFANKQDLPDAAS-EAEIAE----QLGVSSIMN 155 (189)
T ss_dssp CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTCCC-HHHHHH----HTTGGGCCS
T ss_pred HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCCCC-HHHHHH----HhChhhccC
Confidence 77778899999999999997643 333444443333 2566 999999999976321 122222 221111222
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..++++++||+++ .|+++++++|.+.+
T Consensus 156 ~~~~~~~~Sa~~~-----------~gi~~l~~~l~~~i 182 (189)
T 2x77_A 156 RTWTIVKSSSKTG-----------DGLVEGMDWLVERL 182 (189)
T ss_dssp SCEEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred CceEEEEccCCCc-----------cCHHHHHHHHHHHH
Confidence 3468999999987 38899999887654
No 285
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.52 E-value=3.8e-14 Score=144.58 Aligned_cols=154 Identities=15% Similarity=0.079 Sum_probs=99.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++...... ..+.+.+.....+..++. .+.||||||+++|.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 66 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDE-----------------YDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 66 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCC-----------------CCTTCCEEEEEEEEETTEEEEEEEEECCCC---C
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------CCCCchheEEEEEEECCcEEEEEEEECCCcHHHH
Confidence 45678899999999999999997431100 011122222233344444 46789999999999
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..++..+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+.+..... ++...+.+.++
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~----~~~~~~~~~~~-- 139 (189)
T 4dsu_A 67 AMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDLPSRTVDT----KQAQDLARSYG-- 139 (189)
T ss_dssp TTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTSSSCSSCH----HHHHHHHHHHT--
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccCcccccCH----HHHHHHHHHcC--
Confidence 989999999999999999987433222 333333333 2677 99999999997522111 22333444444
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |+++++++|.+.+
T Consensus 140 ---~~~~~~Sa~~g~-----------gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 140 ---IPFIETSAKTRQ-----------GVDDAFYTLVREI 164 (189)
T ss_dssp ---CCEEECCTTTCT-----------THHHHHHHHHHHH
T ss_pred ---CeEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 468999999873 7888888876543
No 286
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.52 E-value=1e-14 Score=151.47 Aligned_cols=156 Identities=14% Similarity=0.074 Sum_probs=104.6
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++.... .+...+++.+.....+..++ ..+.||||||+++|.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 71 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYT----------------NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR 71 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC----------------TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 467889999999999999999874311 11112233333333444444 478999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++|+|+|+++....+. ..++..+... ++| +++|+||+|+.+..... ..+...+.+..+
T Consensus 72 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 144 (206)
T 2bcg_Y 72 TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVL-KLLVGNKCDLKDKRVVE---YDVAKEFADANK--- 144 (206)
T ss_dssp CCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSC---HHHHHHHHHHTT---
T ss_pred HHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccC---HHHHHHHHHHcC---
Confidence 888888999999999999987543332 3334444443 456 89999999997522111 122333444444
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |+++++++|.+.+
T Consensus 145 --~~~~~~Sa~~g~-----------gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 145 --MPFLETSALDST-----------NVEDAFLTMARQI 169 (206)
T ss_dssp --CCEEECCTTTCT-----------THHHHHHHHHHHH
T ss_pred --CeEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 468999999873 7888877776543
No 287
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.51 E-value=7.2e-14 Score=146.09 Aligned_cols=161 Identities=17% Similarity=0.107 Sum_probs=91.5
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~ 726 (1021)
.+.+.+.++|.+++|||||+++|++..... +.. ..+.+.....+..++ ..+.||||||+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~----------------~~~-~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 94 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPE----------------SYT-PTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-----------------------C-CCCCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCC----------------CCC-CccceeEEEEEEECCEEEEEEEEECCCchh
Confidence 356788999999999999999999743110 000 111111122233344 4688999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HHHH
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EMEI 793 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~ 793 (1021)
|...+..++..+|++++|+|+++....+.. .++..+... ++| +++|+||+|+.+.....+.+ .++.
T Consensus 95 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 173 (214)
T 2j1l_A 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVP-IIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRG 173 (214)
T ss_dssp ----------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHH
T ss_pred hhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhhccchhhhhhcccccCcccHHHH
Confidence 998888889999999999999874432222 233444433 677 99999999997643221111 1233
Q ss_pred HHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 794 RELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 794 ~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..+.+.+++ .+++++||++| .|++++++.|.+.+
T Consensus 174 ~~~~~~~~~----~~~~~~SA~~g-----------~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 174 QEMARSVGA----VAYLECSARLH-----------DNVHAVFQEAAEVA 207 (214)
T ss_dssp HHHHHHTTC----SEEEECBTTTT-----------BSHHHHHHHHHHHH
T ss_pred HHHHHhcCC----CEEEEecCCCC-----------CCHHHHHHHHHHHH
Confidence 445544442 37999999987 38888988887643
No 288
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.51 E-value=1.2e-14 Score=151.06 Aligned_cols=157 Identities=14% Similarity=0.066 Sum_probs=79.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC----CeEEEEEecCChh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE----NKHYAHVDCPGHA 725 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~----~~~i~liDtpG~~ 725 (1021)
+.+.+.++|.+++|||||+++|++...... .......| .+.....+..+ ...+.||||||++
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~------------~~~~~t~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFL------------KDYAMTSG--VEVVVAPVTIPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEEC------------------------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCccc------------CCCCCccc--eEEEEEEEEECCcccEEEEEEEECCCcH
Confidence 457889999999999999999997521110 01111112 23333444454 3578999999999
Q ss_pred hhHHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH------cCCCeEEEEEeeccccc-hhhHHHHHHHHHHHhh
Q psy5021 726 DYIKNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ------VGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELL 797 (1021)
Q Consensus 726 ~~~~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~------~~ip~iIvviNK~Dl~~-~~~~~~~~~~~~~~~l 797 (1021)
+|...+..+++.+|++|+|+|++++.. .....++..+.. .++| +++|+||+|+.+ .... ..+++.+++
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~v---~~~~~~~~~ 160 (208)
T 2yc2_C 85 LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR-AVLVANKTDLPPQRHQV---RLDMAQDWA 160 (208)
T ss_dssp HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE-EEEEEECC-------CC---CHHHHHHHH
T ss_pred HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc-EEEEEECcccchhhccC---CHHHHHHHH
Confidence 999988888999999999999987543 233444544444 3566 999999999875 2211 113344455
Q ss_pred hccccCCCceEEEEecccc-cccCCCCCccCcchHHHHHHhhhc
Q psy5021 798 TEYDFDGENTKIVIGSALL-ALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~-~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+.++ ++++++||++ +. ++++++++|.+
T Consensus 161 ~~~~-----~~~~~~Sa~~~~~-----------gi~~l~~~i~~ 188 (208)
T 2yc2_C 161 TTNT-----LDFFDVSANPPGK-----------DADAPFLSIAT 188 (208)
T ss_dssp HHTT-----CEEEECCC------------------CHHHHHHHH
T ss_pred HHcC-----CEEEEeccCCCCc-----------CHHHHHHHHHH
Confidence 5554 5799999998 73 67777777655
No 289
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.51 E-value=1.7e-14 Score=167.59 Aligned_cols=154 Identities=16% Similarity=0.089 Sum_probs=92.0
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHHH-
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIKN- 730 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~- 730 (1021)
+.++++|.+|+|||||+|+|++.... ......|+|.+.....+..++..+.||||||+.++...
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a---------------~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~v 298 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERA---------------IVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEI 298 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC---------------------------------CEEEEETTEEEEEEC-----------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc---------------ccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHH
Confidence 56889999999999999999985311 12334578888888888889999999999999876432
Q ss_pred -------HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc-CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 731 -------MITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV-GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 731 -------~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~-~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
+..++..+|++|+|+|++++...+ ..+...++..+ ++| +|+|+||+|+.+.... +. +++.+. +
T Consensus 299 e~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~p-iIvV~NK~Dl~~~~~~-~~--~~l~~~----~ 370 (476)
T 3gee_A 299 EHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAK-FLTVANKLDRAANADA-LI--RAIADG----T 370 (476)
T ss_dssp ---------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSE-EEEEEECTTSCTTTHH-HH--HHHHHH----H
T ss_pred HHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCC-EEEEEECcCCCCccch-hH--HHHHhc----C
Confidence 344568899999999999877652 22222333333 556 9999999999863321 11 222221 2
Q ss_pred cCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 802 FDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
+ .+++++||++| .|+++|+++|.+.+.
T Consensus 371 ~----~~~i~vSAktg-----------~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 371 G----TEVIGISALNG-----------DGIDTLKQHMGDLVK 397 (476)
T ss_dssp T----SCEEECBTTTT-----------BSHHHHHHHHTHHHH
T ss_pred C----CceEEEEECCC-----------CCHHHHHHHHHHHHh
Confidence 2 36899999988 489999999987654
No 290
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.51 E-value=6.2e-14 Score=139.36 Aligned_cols=153 Identities=15% Similarity=0.088 Sum_probs=101.8
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++...... .....+ +.....+..++ ..+.+|||||+++|.
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~--------------~~~~~~---~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 65 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE--------------CDPTIE---DSYRKQVVIDGETCLLDILDTAGQEEYS 65 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSC--------------CCTTCC---EEEEEEEEETTEEEEEEEEECCCCSSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccc--------------cCCccc---eEEEEEEEECCEEEEEEEEECCCchhhh
Confidence 45678899999999999999987431100 000111 11122233333 457899999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..++..+|++++|+|+++.... ...+++..+... ++| +++++||+|+.+..... ++..++.+..+
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~-- 138 (166)
T 2ce2_X 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAARTVES----RQAQDLARSYG-- 138 (166)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCCSCH----HHHHHHHHHHT--
T ss_pred HHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhcccCH----HHHHHHHHHcC--
Confidence 8888899999999999999874332 223344444332 677 89999999987522111 23334444444
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++++++||+++ .++++++++|.+.
T Consensus 139 ---~~~~~~Sa~~~-----------~gi~~l~~~l~~~ 162 (166)
T 2ce2_X 139 ---IPYIETSAKTR-----------QGVEDAFYTLVRE 162 (166)
T ss_dssp ---CCEEEECTTTC-----------TTHHHHHHHHHHH
T ss_pred ---CeEEEecCCCC-----------CCHHHHHHHHHHH
Confidence 46899999987 3888898888654
No 291
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.51 E-value=2.3e-13 Score=137.48 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=73.0
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeee-eeEEEeecccCceeEEEEcCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSA-SVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~-~~~~~~~~~~~~~~i~liDtP 85 (1021)
+.-+|+++|..|+|||||+++|+...-.. +. .|+... ...+.+ ++..+.+++||||
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~--------------~~-------~t~~~~~~~~~~~--~~~~~~l~i~Dt~ 62 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV--------------LE-------KTESEQYKKEMLV--DGQTHLVLIREEA 62 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC--------------CS-------SCSSSEEEEEEEE--TTEEEEEEEEECS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC--------------cC-------CCcceeEEEEEEE--CCEEEEEEEEECC
Confidence 45689999999999999999997532110 00 011111 111222 2335789999999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HH---hh---cCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QS---QK---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~---~~---~~~p~iiviNK~D~~ 142 (1021)
|+.+ ..+++.+|++|+|+|+++.........|. ++ .. .++|+++|+||+|+.
T Consensus 63 G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 63 GAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp SSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred CCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9987 35778899999999999765444444432 22 22 478999999999984
No 292
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.5e-14 Score=152.32 Aligned_cols=157 Identities=18% Similarity=0.148 Sum_probs=103.6
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++..... ......|. +.....+..++ ..+.||||||+++|.
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~--------------~~~~t~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNM--------------DSKSTIGV--EFATRTLEIEGKRIKAQIWDTAGQERYR 76 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC--------------------CC--SEEEEEEEETTEEEEEEEECCTTTTTTT
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCcccc--eeEEEEEEECCEEEEEEEEECCCccchh
Confidence 4678899999999999999999743111 11122233 33333444455 578999999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..+++.+|++|+|+|+++....+. .+++..+... ++| ++||+||+|+.+..... ..+...+.+..+
T Consensus 77 ~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~--- 149 (223)
T 3cpj_B 77 AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA-VGLIGNKSDLAHLRAVP---TEESKTFAQENQ--- 149 (223)
T ss_dssp CCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CE-EEEEECCGGGGGGCCSC---HHHHHHHHHHTT---
T ss_pred hhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccccC---HHHHHHHHHHcC---
Confidence 888888899999999999987544333 3344444443 566 89999999997522111 122334444443
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||+++ .++++++++|.+.+.
T Consensus 150 --~~~~~~Sa~~~-----------~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 150 --LLFTETSALNS-----------ENVDKAFEELINTIY 175 (223)
T ss_dssp --CEEEECCCC-C-----------CCHHHHHHHHHHHHT
T ss_pred --CEEEEEeCCCC-----------CCHHHHHHHHHHHHH
Confidence 57999999987 388889988876543
No 293
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.50 E-value=1.7e-15 Score=156.64 Aligned_cols=158 Identities=16% Similarity=0.097 Sum_probs=101.0
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++.. ...+...+++.+.....+..++ ..+.||||||+++|
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 95 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDT----------------YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 95 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCC----------------CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC----------------CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhH
Confidence 35778999999999999999999743 1112223334444444455555 56889999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
...+..+++.+|++|+|+|+++....+. ..++..+... ++| +++|+||+|+.+...... .+...+.+.++
T Consensus 96 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~v~~---~~~~~~~~~~~-- 169 (199)
T 3l0i_B 96 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVVDY---TTAKEFADSLG-- 169 (199)
T ss_dssp CCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC--CCCCS---CC-CHHHHTTT--
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCC-EEEEEECccCCccccCCH---HHHHHHHHHcC--
Confidence 8888888899999999999998554333 3344444333 566 899999999875221100 12223333333
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||++| .|+++++++|.+.+.
T Consensus 170 ---~~~~~vSA~~g-----------~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 170 ---IPFLETSAKNA-----------TNVEQSFMTMAAEIK 195 (199)
T ss_dssp ---CCBCCCCC--------------HHHHHHHHHHTTTTT
T ss_pred ---CeEEEEECCCC-----------CCHHHHHHHHHHHHH
Confidence 46899999987 489999999987653
No 294
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.50 E-value=6.7e-14 Score=143.19 Aligned_cols=160 Identities=16% Similarity=0.098 Sum_probs=95.3
Q ss_pred CCcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecC
Q psy5021 645 YSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCP 722 (1021)
Q Consensus 645 ~~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtp 722 (1021)
+...++.+.+.++|.+++|||||+++|++..... ... +.+.+.....+..++ ..+.|||||
T Consensus 15 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~---~t~~~~~~~~~~~~~~~~~~~l~Dt~ 77 (190)
T 3con_A 15 YFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVD--------------EYD---PTIEDSYRKQVVIDGETCLLDILDTA 77 (190)
T ss_dssp ----CEEEEEEEECSTTSSHHHHHHHHHHSSCCS--------------CCC---TTCCEEEEEEEEETTEEEEEEEEECC
T ss_pred cccccceeEEEEECcCCCCHHHHHHHHHcCCCcc--------------ccC---CccceEEEEEEEECCEEEEEEEEECC
Confidence 4455677889999999999999999999743110 000 111111122333444 458899999
Q ss_pred ChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 723 GHADYIKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 723 G~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
|+++|...+..++..+|++++|+|+++....+. ..++..+... ++| +++|+||+|+.+..... +++.++.
T Consensus 78 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~~~----~~~~~~~ 152 (190)
T 3con_A 78 GQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP-MVLVGNKCDLPTRTVDT----KQAHELA 152 (190)
T ss_dssp C-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCCSCH----HHHHHHH
T ss_pred ChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcCCcccCCH----HHHHHHH
Confidence 999999988899999999999999987543222 3333333332 677 99999999987522111 2334444
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+.++ ++++++||+++. ++++++++|.+.+
T Consensus 153 ~~~~-----~~~~~~Sa~~~~-----------gi~~l~~~l~~~~ 181 (190)
T 3con_A 153 KSYG-----IPFIETSAKTRQ-----------GVEDAFYTLVREI 181 (190)
T ss_dssp HHHT-----CCEEECCTTTCT-----------THHHHHHHHHHHH
T ss_pred HHcC-----CeEEEEeCCCCC-----------CHHHHHHHHHHHH
Confidence 4444 468999999873 8888888886643
No 295
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.50 E-value=1.8e-14 Score=150.72 Aligned_cols=163 Identities=14% Similarity=0.062 Sum_probs=106.7
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++..... ......|.+. .....+......+.||||||+++|.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~--------------~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 89 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPE--------------TYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYD 89 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCS--------------SCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGT
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCC--------------CcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHH
Confidence 455778899999999999999999743110 0011112222 1122233334578899999999998
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhHHH---------HHHHHHHH
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKELLD---------LVEMEIRE 795 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~---------~~~~~~~~ 795 (1021)
..+..+++.+|++|+|+|+++...... ..++..+... ++| +++|+||+|+.++..... ...++...
T Consensus 90 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 168 (214)
T 3q3j_B 90 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA 168 (214)
T ss_dssp TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSE-EEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccchhhhhhhcccccCccCHHHHHH
Confidence 888888999999999999998554333 3444555554 667 999999999975211000 11233445
Q ss_pred hhhccccCCCceEEEEecccccccCCCCCccCcch-HHHHHHhhhccC
Q psy5021 796 LLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTS-IKKLLDVLDSSI 842 (1021)
Q Consensus 796 ~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~-i~~Ll~~l~~~l 842 (1021)
+.+.+++ .+++++||++| .| ++++++.|.+.+
T Consensus 169 ~~~~~~~----~~~~e~SA~~g-----------~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 169 IAKQLGA----EIYLEGSAFTS-----------EKSIHSIFRTASMLC 201 (214)
T ss_dssp HHHHHTC----SEEEECCTTTC-----------HHHHHHHHHHHHHHH
T ss_pred HHHHcCC----CEEEEeccCCC-----------cccHHHHHHHHHHHH
Confidence 5555543 27999999987 36 889998887654
No 296
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.50 E-value=1.7e-13 Score=151.43 Aligned_cols=116 Identities=13% Similarity=0.162 Sum_probs=85.7
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
-.+|+++|.+|+|||||+++|+....... ....|.|+......+.+. .++.+++|||||+
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~-----------------~~~~~~Ti~~~~~~~~~~---~~~~l~i~Dt~G~ 62 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFD-----------------TRRLGATIDVEHSHLRFL---GNMTLNLWDCGGQ 62 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGG-----------------GGGCCCCCSEEEEEEEET---TTEEEEEEEECCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcc-----------------ccCcCCccceEEEEEEeC---CceEEEEEECCCc
Confidence 36799999999999999999864221111 124466777666655552 1789999999999
Q ss_pred CCc-----HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHH-H---h--hcCCCEEEEEeCcCCCC
Q psy5021 88 VDF-----TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ-S---Q--KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f-----~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~-~---~--~~~~p~iiviNK~D~~~ 143 (1021)
.+| ...+..+++.+|++|+|+|+++....+....|.. + . ..++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 63 DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 998 5567778899999999999998765555544422 2 2 23899999999999864
No 297
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.50 E-value=5.5e-14 Score=156.73 Aligned_cols=157 Identities=19% Similarity=0.119 Sum_probs=105.8
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++.... ... .|+......++..+..+.||||||+++|..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~---------------~~~----pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 224 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIV---------------TTI----PTIGFNVETVEYKNISFTVWDVGGQDKIRP 224 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCE---------------EEE----EETTEEEEEEEETTEEEEEEECC-----CC
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCC---------------Ccc----cccceEEEEEecCcEEEEEEECCCCHhHHH
Confidence 4567899999999999999999874310 000 144444556777888999999999999999
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHH-HHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMP-QTREHILLA-RQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~-~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..+++.+|++|+|+|+++.... ...+.+..+ ... ++| +|||+||+|+.+... .+.+..+ +.......
T Consensus 225 ~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~~~-~~~i~~~----~~~~~~~~ 298 (329)
T 3o47_A 225 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAMN-AAEITDK----LGLHSLRH 298 (329)
T ss_dssp SHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HHHHHHH----HTCTTCCS
T ss_pred HHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe-EEEEEECccCCcccC-HHHHHHH----hchhhhhc
Confidence 999999999999999999875432 333333332 222 667 999999999976322 2222222 22222223
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..++++++||++| .|+++|++.|.+.+
T Consensus 299 ~~~~~~~vSAk~g-----------~gi~el~~~l~~~l 325 (329)
T 3o47_A 299 RNWYIQATCATSG-----------DGLYEGLDWLSNQL 325 (329)
T ss_dssp SCEEEEECBTTTT-----------BTHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCC-----------cCHHHHHHHHHHHH
Confidence 4578999999987 48999999987654
No 298
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.49 E-value=9.4e-14 Score=151.02 Aligned_cols=205 Identities=15% Similarity=0.273 Sum_probs=110.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
.--||+++|++|+|||||+|+|+......... .+ ......+++++......+.+ ++....+++|||||
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~----~~------~~~~~~~t~~~~~~~~~~~~--~~~~~~l~liDTpG 74 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEY----PG------PSHRIKKTVQVEQSKVLIKE--GGVQLLLTIVDTPG 74 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC-------------------------CCCEEEEEEECC----CCEEEEEEECCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCC----CC------cccccCCceEEEEEEEEEec--CCeEEEEEEEECCC
Confidence 34689999999999999999985322211110 00 00011333444443333333 33346899999999
Q ss_pred CCCc-------HHHH-------HHHhhc-------------cCeEEEEEeCCC-CCchhHHHHHHHHhhcCCCEEEEEeC
Q psy5021 87 HVDF-------TIEV-------ERSLRV-------------LDGAVIIICASS-GIQPQTETVWFQSQKYKVPKMIFVNK 138 (1021)
Q Consensus 87 ~~~f-------~~~~-------~~~l~~-------------~D~~ilvvda~~-g~~~~t~~~~~~~~~~~~p~iiviNK 138 (1021)
+.++ ...+ ..+++. +|+++++++.+. +.......+++.+.. ++|+++|+||
T Consensus 75 ~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK 153 (274)
T 3t5d_A 75 FGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAK 153 (274)
T ss_dssp CSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESS
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEec
Confidence 8544 2222 444443 778999986664 888889998888877 9999999999
Q ss_pred cCCCCC-CHHHHHHHHHHHh---CCceeeee-----------------ee---cccCCceeeEEecccceeeeecCCCee
Q psy5021 139 MDRIGA-NYNNCIIDIKKKF---NCIVLPIN-----------------FN---IGIEENYEGIVDIINKKSFFWKENSII 194 (1021)
Q Consensus 139 ~D~~~~-~~~~~~~~i~~~l---~~~~~~~~-----------------~p---~~~~~~~~g~id~~~~~~~~~~~~~~~ 194 (1021)
+|+... +.....+.+.+.+ +..+.++. +| +++...+....+.+..+.+.|+
T Consensus 154 ~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~~vv~s~~~~~~~~~~~~~r~y~wg----- 228 (274)
T 3t5d_A 154 ADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVRGRQYPWG----- 228 (274)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSEECCCCCCC--------CEEECSSC-----
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCcEEEEeeeEEeeCCeEEEeeecccc-----
Confidence 998643 2333444555544 22222111 11 2223333333455556666663
Q ss_pred eccCChhhHHHHHHHHHHHH-----HHhcCCCHHHHHHHH
Q psy5021 195 IKNIDKDQLSAFDYYNELML-----ETLSNNDEFFLEKYI 229 (1021)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~-----e~~~~~d~~l~e~~l 229 (1021)
..+++..........|..|+ |.....++.+.|.|.
T Consensus 229 ~~~ve~~~~~df~~lr~~l~~~~~~~l~~~t~~~~ye~yr 268 (274)
T 3t5d_A 229 VAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYR 268 (274)
T ss_dssp EEESSCTTTCSHHHHHHTTTTTTHHHHHHHHHHTHHHHHH
T ss_pred eEEecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233333333445555555 555666666677664
No 299
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.49 E-value=5.7e-14 Score=163.31 Aligned_cols=151 Identities=21% Similarity=0.186 Sum_probs=111.7
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh-hh---
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA-DY--- 727 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~-~~--- 727 (1021)
+.++++|.+|+|||||+|+|++....+ .....|+|.+.....+..++..+.||||||+. ++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~---------------vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ 308 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAI---------------VTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDL 308 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCC---------------CCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTT
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCc---------------cCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhh
Confidence 578999999999999999999854221 11234677787777788889999999999998 54
Q ss_pred -----HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 728 -----IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 728 -----~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
...+..++..+|++|+|+|++++...+..+.+..+ .++| +|+|+||+|+.+... . +++.+++ ++
T Consensus 309 ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~p-iivV~NK~DL~~~~~-~----~~~~~~~---~~ 377 (482)
T 1xzp_A 309 VERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKR-YLVVINKVDVVEKIN-E----EEIKNKL---GT 377 (482)
T ss_dssp CCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSS-EEEEEEECSSCCCCC-H----HHHHHHH---TC
T ss_pred HHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCC-EEEEEECcccccccC-H----HHHHHHh---cC
Confidence 24567788999999999999988766666665544 3677 899999999975211 1 2223332 11
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..+++++||++|. |+++|+++|.+.+
T Consensus 378 ---~~~~i~iSAktg~-----------Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 378 ---DRHMVKISALKGE-----------GLEKLEESIYRET 403 (482)
T ss_dssp ---STTEEEEEGGGTC-----------CHHHHHHHHHHHT
T ss_pred ---CCcEEEEECCCCC-----------CHHHHHHHHHHHH
Confidence 2468999999883 8888888887644
No 300
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.49 E-value=4.4e-14 Score=143.95 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=102.0
Q ss_pred CcccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCC
Q psy5021 646 STDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPG 723 (1021)
Q Consensus 646 ~~~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG 723 (1021)
....+.+.+.++|.+++|||||+++|++..... ..... + ......+..++ ..+.+|||||
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~--------------~~~~t-~---~~~~~~~~~~~~~~~l~i~Dt~G 76 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQ--------------EESPE-G---GRFKKEIVVDGQSYLLLIRDEGG 76 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCC--------------CCCTT-C---EEEEEEEEETTEEEEEEEEECSS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCC--------------CcCCC-c---ceEEEEEEECCEEEEEEEEECCC
Confidence 445677889999999999999999999743110 00111 1 11123344455 4567799999
Q ss_pred hhhhHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 724 HADYIKNMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 724 ~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
+++|. +++.+|++++|+|+++....+. ..++..+.. .++| +++|+||+|+.+...+ ....++..++.+
T Consensus 77 ~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~-~v~~~~~~~~~~ 149 (184)
T 3ihw_A 77 PPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQDAISAANPR-VIDDSRARKLST 149 (184)
T ss_dssp SCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECTTCBTTBCC-CSCHHHHHHHHH
T ss_pred Chhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccc-ccCHHHHHHHHH
Confidence 99886 6788999999999998554333 344444444 2567 8999999998531110 001123444554
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.++ .++++++||++| .|+++++++|.+.
T Consensus 150 ~~~----~~~~~e~Sa~~~-----------~gv~~lf~~l~~~ 177 (184)
T 3ihw_A 150 DLK----RCTYYETCATYG-----------LNVERVFQDVAQK 177 (184)
T ss_dssp HTT----TCEEEEEBTTTT-----------BTHHHHHHHHHHH
T ss_pred HcC----CCeEEEecCCCC-----------CCHHHHHHHHHHH
Confidence 444 257899999987 3888898888653
No 301
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.49 E-value=6.9e-14 Score=143.93 Aligned_cols=157 Identities=19% Similarity=0.137 Sum_probs=101.9
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~~ 728 (1021)
.+.+.++|.+++|||||+++|++..... ... .+++.+.....+..++ ..+.+|||||++++.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~--------------~~~--~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~ 86 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQGDS--------------AHE--PENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG 86 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEECCG--------------GGT--TTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccCCc--------------cCC--CCcccceEEEEEEECCEEEEEEEEecCCCccch
Confidence 4678899999999999999998643111 111 1222222233344444 456789999998875
Q ss_pred H-HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 729 K-NMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 729 ~-~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
. ....+++.+|++|+|+|+++... ....+++..+.. .++| +|+|+||+|+.+..... .++...+.+..+
T Consensus 87 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~a~~~~- 161 (195)
T 3cbq_A 87 GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSREVS---LEEGRHLAGTLS- 161 (195)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCTTTCCSC---HHHHHHHHHHTT-
T ss_pred hhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeechhccccCCcC---HHHHHHHHHHhC-
Confidence 5 45566789999999999987432 223344444443 2677 99999999997522110 122333444443
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++++++||+++. +++++++.|.+.+.
T Consensus 162 ----~~~~e~Sa~~~~-----------~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 162 ----CKHIETSAALHH-----------NTRELFEGAVRQIR 187 (195)
T ss_dssp ----CEEEEEBTTTTB-----------SHHHHHHHHHHHHH
T ss_pred ----CEEEEEcCCCCC-----------CHHHHHHHHHHHHH
Confidence 478999999873 88999988876553
No 302
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.49 E-value=5.3e-14 Score=143.28 Aligned_cols=160 Identities=13% Similarity=0.063 Sum_probs=102.3
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++..... ......+... .....+......+.||||||+++|..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~--------------~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~ 70 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPE--------------NYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDN 70 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS--------------SCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTT
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhh
Confidence 34677899999999999999999743110 0011111111 11122222335788999999999987
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HHHHHHh
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EMEIREL 796 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~~~ 796 (1021)
.+..++..+|++|+|+|+++....+. ..++..+... ++| +++|+||+|+.++.....++ .++..++
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 149 (184)
T 1m7b_A 71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 149 (184)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH
Confidence 77778899999999999987443222 2233344432 566 99999999997532111111 1234445
Q ss_pred hhccccCCCceEEEEeccc-ccccCCCCCccCcchHHHHHHhhhc
Q psy5021 797 LTEYDFDGENTKIVIGSAL-LALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~-~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+.++ ..+++++||+ ++ .|++++++.+.+
T Consensus 150 ~~~~~----~~~~~e~Sa~~~~-----------~gi~~l~~~i~~ 179 (184)
T 1m7b_A 150 AKQIG----AATYIECSALQSE-----------NSVRDIFHVATL 179 (184)
T ss_dssp HHHHT----CSEEEECBTTTBH-----------HHHHHHHHHHHH
T ss_pred HHHcC----CcEEEEeeecCCC-----------cCHHHHHHHHHH
Confidence 55444 2579999998 45 388999988765
No 303
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.49 E-value=5.7e-14 Score=143.53 Aligned_cols=158 Identities=14% Similarity=0.058 Sum_probs=99.1
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY 727 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~ 727 (1021)
..+.+.+.++|.+++|||||+++|++.... .....+.|.+. .....+......+.||||||+++|
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~--------------~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFI--------------SEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTP 82 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCC--------------SCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---C
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCC--------------cccCCCcccee-eEEEEECCEEEEEEEEECCCCCcc
Confidence 345678899999999999999999974311 00111122222 112222223356789999999988
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH------cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ------VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~------~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
.. +..+++.+|++++|+|+++....+ ...++..+.. .++| +++|+||+|+.+..... .++..++.+.+
T Consensus 83 ~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~ 157 (187)
T 3c5c_A 83 RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMAQYRQVT---KAEGVALAGRF 157 (187)
T ss_dssp CC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGGCSSC---HHHHHHHHHHH
T ss_pred hh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchhhcCccC---HHHHHHHHHHc
Confidence 65 356889999999999998743322 2334444443 3677 99999999996522111 12334444444
Q ss_pred ccCCCceEEEEecc-cccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 801 DFDGENTKIVIGSA-LLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa-~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+ ++++++|| ++| .+++++++.|.+.
T Consensus 158 ~-----~~~~e~Sa~~~g-----------~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 158 G-----CLFFEVSACLDF-----------EHVQHVFHEAVRE 183 (187)
T ss_dssp T-----CEEEECCSSSCS-----------HHHHHHHHHHHHH
T ss_pred C-----CcEEEEeecCcc-----------ccHHHHHHHHHHH
Confidence 4 47999999 776 4889999888653
No 304
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.49 E-value=1.3e-14 Score=162.58 Aligned_cols=173 Identities=16% Similarity=0.087 Sum_probs=111.0
Q ss_pred ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC-CHHHHHHHHH
Q psy5021 76 KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA-NYNNCIIDIK 154 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~-~~~~~~~~i~ 154 (1021)
++.++||||||+.++... ..+.+|++|+|+|+..+...+.... ...++|.++|+||+|+... +....+++++
T Consensus 148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~ 220 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGDNHTNVAIARHMYE 220 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCCChHHHHHHHHHHH
Confidence 789999999999887654 4689999999999987643221111 1135789999999999754 3455556666
Q ss_pred HHhCC-ce-----eeeeeecc--cCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHHHHHHHHHhcCCCHHHHH
Q psy5021 155 KKFNC-IV-----LPINFNIG--IEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLE 226 (1021)
Q Consensus 155 ~~l~~-~~-----~~~~~p~~--~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e 226 (1021)
+.++. ++ .+..+|+. .+.++.++++.+......|..+ ..+| .....+++..+.|.+ ++++++
T Consensus 221 ~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~~----~~~~---~~r~~~~~~~~~e~i---~e~l~~ 290 (341)
T 2p67_A 221 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTAS----GRLQ---QVRQQQSVEWLRKQT---EEEVLN 290 (341)
T ss_dssp HHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHHT----THHH---HHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHhC----ChHH---HHHHHHHHHHHHHHH---HHHHHH
Confidence 64321 10 12233443 5556666666665543333211 0111 122344666677775 889999
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCceeEEEeccccCcccHHHHHHHHHH
Q psy5021 227 KYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICE 274 (1021)
Q Consensus 227 ~~l~~~~~~~~~~~~~~~~~~~~~~~Pv~~~Sa~~~~Gi~~Ll~~i~~ 274 (1021)
+|+++ ++.+++...+++++..+.+.|++| .+.|++.+..
T Consensus 291 ~~~~~-~~~~~~~~~l~~~v~~~~~~P~~~--------~~~~~~~~~~ 329 (341)
T 2p67_A 291 HLFAN-EDFDRYYRQTLLAVKNNTLSPRTG--------LRQLSEFIQT 329 (341)
T ss_dssp HHHHC-HHHHHHHHHHHHHHHTTSSCHHHH--------HHHHHHHHHC
T ss_pred HHHhC-cchhHHHHHHHHHHHhCCCCHHHH--------HHHHHHHHhh
Confidence 99985 778889999999999999999865 3577777654
No 305
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.48 E-value=5.7e-14 Score=143.50 Aligned_cols=122 Identities=23% Similarity=0.313 Sum_probs=74.2
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC-
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH- 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~- 87 (1021)
.+|+++|+.|+|||||+++|+...-... ...|+|.... .+.+. .+++|||||+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~t~~~~--~~~~~------~~~l~Dt~G~~ 55 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRG------------------KRPGVTRKII--EIEWK------NHKIIDMPGFG 55 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSS------------------SSTTCTTSCE--EEEET------TEEEEECCCBS
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccC------------------CCCCccceeE--EEecC------CEEEEECCCcc
Confidence 5799999999999999999974221100 1123443322 12221 6899999994
Q ss_pred ----------CCcHHHHHHHhhc----cCeEEEEEeCCCC-----------CchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 88 ----------VDFTIEVERSLRV----LDGAVIIICASSG-----------IQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 88 ----------~~f~~~~~~~l~~----~D~~ilvvda~~g-----------~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
..|...+..+++. +++++.|+|+... ...++.++++.+...++|+++|+||+|+.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (190)
T 2cxx_A 56 FMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKI 135 (190)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred ccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhcc
Confidence 4444555555544 5566667776431 11223345556666799999999999997
Q ss_pred CCCHHHHHHHHHHHh
Q psy5021 143 GANYNNCIIDIKKKF 157 (1021)
Q Consensus 143 ~~~~~~~~~~i~~~l 157 (1021)
... .+..+++.+.+
T Consensus 136 ~~~-~~~~~~~~~~~ 149 (190)
T 2cxx_A 136 KNV-QEVINFLAEKF 149 (190)
T ss_dssp SCH-HHHHHHHHHHH
T ss_pred CcH-HHHHHHHHHHh
Confidence 543 33344444444
No 306
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.48 E-value=1.5e-13 Score=148.38 Aligned_cols=165 Identities=13% Similarity=0.120 Sum_probs=108.2
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhh-
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADY- 727 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~- 727 (1021)
.+...++++|++++|||||+|+|++........ ...++|.+.....+.+.+..+.||||||+.++
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKL--------------GSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT--------------TSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCC--------------CCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 456789999999999999999999754221111 11125666666667778899999999998764
Q ss_pred ----------HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEe-eccccchhhHHHHHH-
Q psy5021 728 ----------IKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQV-----GVPNIVVFLN-KADCVQDKELLDLVE- 790 (1021)
Q Consensus 728 ----------~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~-----~ip~iIvviN-K~Dl~~~~~~~~~~~- 790 (1021)
.+.+..+++.+|++|+|+|++. ...+....+..+... +.| .|+++| |+|+... ...+.+.
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~-~i~vv~nK~Dl~~~-~~~~~i~~ 162 (260)
T 2xtp_A 86 DHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGH-TIVLFTHKEDLNGG-SLMDYMHD 162 (260)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGG-EEEEEECGGGGTTC-CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhcc-EEEEEEcccccCCc-cHHHHHHh
Confidence 3333446788999999999985 666666666666665 567 555666 9999752 2112111
Q ss_pred ---HHHHHhhhccccCCCceEE--EEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 791 ---MEIRELLTEYDFDGENTKI--VIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 791 ---~~~~~~l~~~~~~~~~~~i--i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
.++..+++.++.. ...+ +++||+++ .++++|++.|.+.++
T Consensus 163 ~~~~~~~~~~~~~~~~--~~~~~~~~~SA~~~-----------~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 163 SDNKALSKLVAACGGR--ICAFNNRAEGSNQD-----------DQVKELMDCIEDLLM 207 (260)
T ss_dssp CCCHHHHHHHHHTTTC--EEECCTTCCHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhCCe--EEEecCcccccccH-----------HHHHHHHHHHHHHHH
Confidence 2233333333311 0012 78899987 388889888877553
No 307
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=142.61 Aligned_cols=160 Identities=18% Similarity=0.120 Sum_probs=103.2
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCChhhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGHADY 727 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~~~~ 727 (1021)
+.+.+.++|.+++|||||+++|++.... ... ...+.+.....+..++. .+.||||||+++|
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~--------------~~~---~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 81 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYP--------------TEY---IPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF 81 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-------------------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC--------------CCC---CCcccceeEEEEEECCEEEEEEEEECCCCHHH
Confidence 4567889999999999999999974310 000 11111222233444554 5679999999999
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhHHHH---------HHHHHH
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKELLDL---------VEMEIR 794 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~---------~~~~~~ 794 (1021)
...+..++..+|++++|+|+++....+.. .++..+... ++| +++|+||+|+.+....... ..++..
T Consensus 82 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 160 (201)
T 2q3h_A 82 DKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAP-IILVGTQSDLREDVKVLIELDKCKEKPVPEEAAK 160 (201)
T ss_dssp SSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSC-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred HHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhchhhhhhhcccccccCCHHHHH
Confidence 87777788999999999999875433332 244444443 677 8999999999753211110 112334
Q ss_pred HhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 795 ELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 795 ~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+.+.+++ .+++++||++| .|+++++++|.+.+
T Consensus 161 ~~~~~~~~----~~~~~~Sa~~g-----------~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 161 LLAEEIKA----ASYIECSALTQ-----------KNLKEVFDAAIVAG 193 (201)
T ss_dssp HHHHHHTC----SEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred HHHHhcCC----cEEEEEecCCC-----------CCHHHHHHHHHHHH
Confidence 44444442 37899999987 38888998887644
No 308
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.47 E-value=2.7e-14 Score=152.14 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=87.3
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEc
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIID 83 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liD 83 (1021)
+....++|+++|++|+|||||+++|+....... .....++|.......+.|. +..+++||
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~----------------~~~~~~~t~~~~~~~~~~~----~~~i~liD 84 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHS----------------GTAAKSITKKCEKRSSSWK----ETELVVVD 84 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-----------------------CCSCEEEEEEET----TEEEEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCcc----------------CCCCCceeeeEEEEEEEeC----CceEEEEE
Confidence 345678999999999999999999974322110 0122355666666667777 78999999
Q ss_pred CCCCCCc-----------HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHh-----hcCCCEEEEEeCcCCCCCC-H
Q psy5021 84 TPGHVDF-----------TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQ-----KYKVPKMIFVNKMDRIGAN-Y 146 (1021)
Q Consensus 84 tPG~~~f-----------~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~-----~~~~p~iiviNK~D~~~~~-~ 146 (1021)
|||+.+. ...+..+.+.+|++|+|+|++.... .....+..+. ....|+++|+||+|+.... .
T Consensus 85 TpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~ 163 (239)
T 3lxx_A 85 TPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNL 163 (239)
T ss_dssp CCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-----
T ss_pred CCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccH
Confidence 9997653 3333444556799999999975433 3333333332 2356999999999986542 2
Q ss_pred H-------HHHHHHHHHhCCceeeeeee
Q psy5021 147 N-------NCIIDIKKKFNCIVLPINFN 167 (1021)
Q Consensus 147 ~-------~~~~~i~~~l~~~~~~~~~p 167 (1021)
. +.++++.+.++.....++.+
T Consensus 164 ~~~i~~~~~~l~~l~~~~~~~~~~~~~~ 191 (239)
T 3lxx_A 164 HDYLREAPEDIQDLMDIFGDRYCALNNK 191 (239)
T ss_dssp -------CHHHHHHHHHHSSSEEECCTT
T ss_pred HHHHHhchHHHHHHHHHcCCEEEEEECC
Confidence 2 24555556666655444433
No 309
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.46 E-value=8.8e-14 Score=144.34 Aligned_cols=160 Identities=13% Similarity=0.059 Sum_probs=102.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++..... ......+.+. .....++.....+.||||||+++|..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~--------------~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 91 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPE--------------NYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDN 91 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS--------------SCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCC--------------CcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhH
Confidence 45678899999999999999999743110 0011111111 11122222335788999999999987
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HHHHHHh
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT--REHILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EMEIREL 796 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~~~ 796 (1021)
.+..+++.+|++|+|+|+++...... ..++..+... ++| +|+|+||+|+.++......+ .++..++
T Consensus 92 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 170 (205)
T 1gwn_A 92 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 170 (205)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEechhhccchhhhhhhcccccCCCCHHHHHHH
Confidence 77778899999999999987433222 2333444442 566 99999999997532111111 1234445
Q ss_pred hhccccCCCceEEEEeccc-ccccCCCCCccCcchHHHHHHhhhc
Q psy5021 797 LTEYDFDGENTKIVIGSAL-LALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~-~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
.+.++. .+++++||+ ++ .|++++++.|.+
T Consensus 171 ~~~~~~----~~~~e~SAk~~~-----------~gv~~lf~~l~~ 200 (205)
T 1gwn_A 171 AKQIGA----ATYIECSALQSE-----------NSVRDIFHVATL 200 (205)
T ss_dssp HHHHTC----SEEEECCTTTCH-----------HHHHHHHHHHHH
T ss_pred HHHcCC----CEEEEeeeccCC-----------cCHHHHHHHHHH
Confidence 544442 479999998 45 388889888765
No 310
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.46 E-value=3.9e-14 Score=157.63 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=77.7
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
+.+|+++|.+|+|||||+++|......+ .+ ....|+......+.+.. ...+.++||||+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i------------~~------~~ftTl~p~~g~v~~~~---~~~~~l~DtPG~ 216 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKI------------AD------YHFTTLVPNLGMVETDD---GRSFVMADLPGL 216 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEE------------SS------TTSSCCCCCEEEEECSS---SCEEEEEEHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCcc------------cc------CCccccCceEEEEEeCC---CceEEEecCCCC
Confidence 4579999999999999999985322111 11 11335555544555551 378999999996
Q ss_pred CC-------cHHHHHHHhhccCeEEEEEeCCC---CCc-hhHHHHHHHHhh-----cCCCEEEEEeCcCCCC
Q psy5021 88 VD-------FTIEVERSLRVLDGAVIIICASS---GIQ-PQTETVWFQSQK-----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~-------f~~~~~~~l~~~D~~ilvvda~~---g~~-~~t~~~~~~~~~-----~~~p~iiviNK~D~~~ 143 (1021)
.+ +.....+.+..+|++|+|+|+++ ... .....++..+.. .++|+++|+||+|+..
T Consensus 217 i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 217 IEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp HHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred cccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence 43 45566667777999999999986 222 222333344443 4799999999999863
No 311
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.46 E-value=1.7e-13 Score=141.12 Aligned_cols=158 Identities=16% Similarity=0.112 Sum_probs=101.0
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.+.++|.+++|||||+++|++..... ......+... .....+......+.||||||+++ .
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~--------------~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~ 89 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIW--------------EYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-T 89 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCS--------------CCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCc--------------ccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-c
Confidence 345788999999999999999999743110 0111112111 11122222335688999999988 5
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
..+..+++.+|++++|+|+++... ....+++..+.. .++| +++|+||+|+.+..... .++..++.+.++
T Consensus 90 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~~~~~~~-- 163 (196)
T 2atv_A 90 IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT-LILVGNKADLDHSRQVS---TEEGEKLATELA-- 163 (196)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGGCCSC---HHHHHHHHHHHT--
T ss_pred cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCc-EEEEEECcccccccccC---HHHHHHHHHHhC--
Confidence 667777899999999999987432 222333433333 3677 99999999997532111 122333443333
Q ss_pred CCceEEEEecccccccCCCCCccCcc-hHHHHHHhhhccC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTT-SIKKLLDVLDSSI 842 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~-~i~~Ll~~l~~~l 842 (1021)
++++++||++| . |+++++++|.+.+
T Consensus 164 ---~~~~~~Sa~~g-----------~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 164 ---CAFYECSACTG-----------EGNITEIFYELCREV 189 (196)
T ss_dssp ---SEEEECCTTTC-----------TTCHHHHHHHHHHHH
T ss_pred ---CeEEEECCCcC-----------CcCHHHHHHHHHHHH
Confidence 57999999987 4 7888888876543
No 312
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.46 E-value=2.2e-13 Score=138.73 Aligned_cols=165 Identities=15% Similarity=0.136 Sum_probs=101.8
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEee-----CCeEEEEEecCChhh
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYES-----ENKHYAHVDCPGHAD 726 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~-----~~~~i~liDtpG~~~ 726 (1021)
+.+.++|.+++|||||+++|++..... ........| ++.....+.. ....+.+|||||+++
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~------------~~~~~~t~g--~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSD------------LGMQSATVG--IDVKDWPIQIRDKRKRDLVLNVWDFAGREE 68 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------------------CS--EEEEEEEC---------CEEEEEEECSHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCcc------------CCCcceecc--EEeEEeeeccccCCCCceEEEEEecCCCHH
Confidence 457889999999999999999742110 001112223 2332222221 345789999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCC--cHHHHHHHHHHHHc--CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGP--MPQTREHILLARQV--GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~--~~qt~e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
|......+++.+|++++|+|.+++. +.....++..+... +.| +++|.||+|+.+.....+........+.+.+++
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T 2zej_A 69 FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTHLDVSDEKQRKACMSKITKELLNKRGF 147 (184)
T ss_dssp HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCE-EEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTS
T ss_pred HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCc-EEEEEECCCcccchhhHHHHHHHHHHHHHhcCC
Confidence 9888788889999999999998753 22233444444332 566 899999999976322211122333445555554
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
. ...+++++||+++. .++++|++.|.+.+
T Consensus 148 ~-~~~~~~~~Sa~~~~----------~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 148 P-AIRDYHFVNATEES----------DALAKLRKTIINES 176 (184)
T ss_dssp C-EEEEEEECCTTSCC----------HHHHHHHHHHHHHH
T ss_pred c-chhheEEEecccCc----------hhHHHHHHHHHHHH
Confidence 2 11248999999762 27888888886644
No 313
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.45 E-value=1.3e-13 Score=139.28 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=96.2
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~ 726 (1021)
.+.+.+.++|.+++|||||+++|++..... .....|... ...+..++ ..+.+|||||+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~---------------~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~ 66 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV---------------LEKTESEQY---KKEMLVDGQTHLVLIREEAGAPD 66 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC---------------CSSCSSSEE---EEEEEETTEEEEEEEEECSSSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC---------------cCCCcceeE---EEEEEECCEEEEEEEEECCCCch
Confidence 456788999999999999999999743210 111122211 22233344 4578899999987
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHHH-HHHHHHHc------CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTRE-HILLARQV------GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e-~l~~~~~~------~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
..+++.+|++|+|+|+++....+... ++..+... ++| +++|+||+|+.+...+ ....++..++.+.
T Consensus 67 -----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~v~~~~~~~~~~~ 139 (178)
T 2iwr_A 67 -----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA-LALVGTQDRISASSPR-VVGDARARALXAD 139 (178)
T ss_dssp -----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCE-EEEEEECTTCBTTBCC-CSCHHHHHHHHHH
T ss_pred -----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccC-cCCHHHHHHHHHh
Confidence 34678899999999998754333332 22233332 566 9999999998421100 0001223333333
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.+ .++++++||++| .|++++++.|.+.
T Consensus 140 ~~----~~~~~~~Sa~~~-----------~~i~~lf~~l~~~ 166 (178)
T 2iwr_A 140 MK----RCSYYETXATYG-----------LNVDRVFQEVAQK 166 (178)
T ss_dssp HS----SEEEEEEBTTTT-----------BTHHHHHHHHHHH
T ss_pred hc----CCeEEEEecccc-----------CCHHHHHHHHHHH
Confidence 32 368999999987 3888888888654
No 314
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.18 E-value=5.8e-15 Score=153.12 Aligned_cols=117 Identities=15% Similarity=0.039 Sum_probs=79.6
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|+...-.... .. |+.... ...+..++..+.+.+||||
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-------------------~~-t~~~~~-~~~~~~~~~~~~l~i~Dt~ 86 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY-------------------IP-TVFDNY-SANVMVDGKPVNLGLWDTA 86 (204)
Confidence 44578999999999999999999632210000 00 110000 0011112336778899999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhhc--CCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQKY--KVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~~--~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++|+|+|+++....+... .| ..+... ++|+++|+||+|+..
T Consensus 87 G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 87 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
Confidence 99999999999999999999999998765444432 33 333333 799999999999864
No 315
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.45 E-value=1.1e-13 Score=153.87 Aligned_cols=137 Identities=11% Similarity=0.142 Sum_probs=86.0
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCC-----Cc--ccccc---c-------------------CCcccccChH-----
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGS-----SH--KIGEV---H-------------------HGTTITDWMQ----- 52 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~-----~~--~~g~~---~-------------------~~~~~~d~~~----- 52 (1021)
....|+|+|++|+|||||+|+|+..... +. .++.+ . .+....|+..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 4678999999999999999999865431 10 11000 0 0011112111
Q ss_pred -HHhhhC----ceeeeeeeEEEeecccCceeEEEEcCCCCCC-------------cHHHHHHHhhccCeEEEEEeC-CCC
Q psy5021 53 -QEQERG----ITITSASVSIFWEVNKFKYMINIIDTPGHVD-------------FTIEVERSLRVLDGAVIIICA-SSG 113 (1021)
Q Consensus 53 -~e~~rg----iTi~~~~~~~~~~~~~~~~~i~liDtPG~~~-------------f~~~~~~~l~~~D~~ilvvda-~~g 113 (1021)
.+..+. -.+......+.+.. .....++||||||+.+ |...+..+++.+|++++|+|+ ..+
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYS-PHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEE-TTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHhcCCCCCccCccEEEEEec-CCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 110010 02222333444321 1257899999999865 567788899999999999997 556
Q ss_pred CchhH-HHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 114 IQPQT-ETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 114 ~~~~t-~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
...+. ..+++.+...+.|+++|+||+|+...
T Consensus 182 ~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 182 LANSDALQLAKEVDPEGKRTIGVITKLDLMDK 213 (315)
T ss_dssp STTCSHHHHHHHHCSSCSSEEEEEECTTSSCS
T ss_pred hhhhHHHHHHHHhCCCCCcEEEEEcCcccCCc
Confidence 55444 47778888889999999999998643
No 316
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.45 E-value=2.6e-13 Score=138.60 Aligned_cols=153 Identities=22% Similarity=0.294 Sum_probs=98.4
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCC--------
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPG-------- 723 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG-------- 723 (1021)
+.+.++|.+++|||||+++|++.... .+...|+|.+.....+. .+.+|||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~ 61 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR----------------RGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLP 61 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS----------------SSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc----------------cCCCCCccceeEEEecC----CEEEEECCCccccccCC
Confidence 35678999999999999999974311 11223555444443332 689999999
Q ss_pred ---hhhhHHHHHHHhh----hCCEEEEEEECCCC-----------CcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhH
Q psy5021 724 ---HADYIKNMITGAA----QMDGAILVCSAVDG-----------PMPQTREHILLARQVGVPNIVVFLNKADCVQDKEL 785 (1021)
Q Consensus 724 ---~~~~~~~~~~~~~----~aD~ailVvDa~~g-----------~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~ 785 (1021)
+++|...+..+++ .+++++.|+|+... ...++.+.+..+...++| +++|+||+|+....
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-- 138 (190)
T 2cxx_A 62 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP-TIVAVNKLDKIKNV-- 138 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC-EEEEEECGGGCSCH--
T ss_pred HHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc-eEEEeehHhccCcH--
Confidence 6777666665554 46677788886531 111223344455566888 99999999997632
Q ss_pred HHHHHHHHHHhhhccccCC--CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 786 LDLVEMEIRELLTEYDFDG--ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 786 ~~~~~~~~~~~l~~~~~~~--~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..+..++.+.++... ...+++++||++| .|+++++++|.+.+
T Consensus 139 ----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-----------~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 139 ----QEVINFLAEKFEVPLSEIDKVFIPISAKFG-----------DNIERLKNRIFEVI 182 (190)
T ss_dssp ----HHHHHHHHHHHTCCGGGHHHHEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhhhhhhccCCcEEEEecCCC-----------CCHHHHHHHHHHhc
Confidence 122333334444310 0236899999987 38899999887654
No 317
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.45 E-value=2.3e-13 Score=147.93 Aligned_cols=166 Identities=17% Similarity=0.161 Sum_probs=96.0
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCChhh--
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGHAD-- 726 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~~~-- 726 (1021)
.+++.++|.+|+|||||+|+|++........+. .......+++++.....+..++. .+++|||||+.+
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~ 79 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPG--------PSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAV 79 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC--CCEEEEEEECCCCSCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCC--------cccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccc
Confidence 367889999999999999999875432221100 00111334455555555555553 889999999832
Q ss_pred -----hHHHH-------HHHhhh-------------CCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Q psy5021 727 -----YIKNM-------ITGAAQ-------------MDGAILVCSAVD-GPMPQTREHILLARQVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 727 -----~~~~~-------~~~~~~-------------aD~ailVvDa~~-g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~ 780 (1021)
+.... ..++.. +|+++++++.+. +......+.+..+.. ++| +|+|+||+|+.
T Consensus 80 ~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~p-vi~V~nK~D~~ 157 (274)
T 3t5d_A 80 DNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKADTL 157 (274)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSC-EEEEESSGGGS
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCC-EEEEEeccCCC
Confidence 22221 333333 789999996654 777888887777766 788 99999999997
Q ss_pred chhhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 781 QDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 781 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
... .....++++.+.+...+ ++++++||.++ .++.+++++|.+.+|
T Consensus 158 ~~~-e~~~~~~~i~~~l~~~~-----i~v~~~sa~~~-----------~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 158 TPE-ECQQFKKQIMKEIQEHK-----IKIYEFPETDD-----------EEENKLVKKIKDRLP 203 (274)
T ss_dssp CHH-HHHHHHHHHHHHHHHTT-----CCCCCC----------------------CHHHHHTCS
T ss_pred CHH-HHHHHHHHHHHHHHHcC-----CeEEcCCCCCC-----------hhHHHHHHHHhcCCC
Confidence 633 23444455665555444 45788899876 367778888877553
No 318
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.17 E-value=7.5e-15 Score=152.31 Aligned_cols=159 Identities=18% Similarity=0.085 Sum_probs=103.1
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEE--EEeeCCeEEEEEecCChhh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHV--EYESENKHYAHVDCPGHAD 726 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~--~~~~~~~~i~liDtpG~~~ 726 (1021)
-+.+.+.++|.+++|||||+++|++...... ....+.+.... .+......+.||||||+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------YIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 4568899999999999999999986431100 00111111111 1222334566999999999
Q ss_pred hHHHHHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhHHHH---------HHHHH
Q psy5021 727 YIKNMITGAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKELLDL---------VEMEI 793 (1021)
Q Consensus 727 ~~~~~~~~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~---------~~~~~ 793 (1021)
|...+..+++.+|++++|+|+++....+.. .++..+... ++| +++|+||+|+.+.....+. ...+.
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 169 (204)
T 3th5_A 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 169 (204)
Confidence 998888899999999999999876543332 344444444 677 8999999999753211111 11223
Q ss_pred HHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 794 RELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 794 ~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..+.+.+++ .+++++||++|. |++++++.|.+
T Consensus 170 ~~~~~~~~~----~~~~~vSA~~g~-----------gi~~l~~~l~~ 201 (204)
T 3th5_A 170 LAMAKEIGA----VKYLECSALTQR-----------GLKTVFDEAIR 201 (204)
Confidence 333333332 378999999883 78888888764
No 319
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.44 E-value=3.4e-13 Score=144.08 Aligned_cols=167 Identities=15% Similarity=0.115 Sum_probs=110.1
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh----
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH---- 724 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~---- 724 (1021)
...+.++++|.+|+|||||+|+|++........ ...|+|.......+...+..+.||||||.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~--------------~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~ 84 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRL--------------GATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQ 84 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------------------CCSCEEEEEEETTEEEEEEECCSCSSTT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccC--------------CCCCccccEEEEEEEECCcEEEEEECCCCCCCC
Confidence 456789999999999999999999854322111 12346666666777888999999999997
Q ss_pred ----hhhHHHHHHHh----hhCCEEEEEEECCCCCcHHHHHHHHHHHHc------CCCeEEEEEeeccccchhhHHHHHH
Q psy5021 725 ----ADYIKNMITGA----AQMDGAILVCSAVDGPMPQTREHILLARQV------GVPNIVVFLNKADCVQDKELLDLVE 790 (1021)
Q Consensus 725 ----~~~~~~~~~~~----~~aD~ailVvDa~~g~~~qt~e~l~~~~~~------~ip~iIvviNK~Dl~~~~~~~~~~~ 790 (1021)
+++...+..++ ..+|++|+|+|++. ....+...+..+... +.| +|++.||+|+.+. ...+.+.
T Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~-iilv~nK~Dl~~~-~~~~~l~ 161 (247)
T 3lxw_A 85 VSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWM-VIVFTRKEDLAGG-SLHDYVS 161 (247)
T ss_dssp HHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGE-EEEEECGGGGTTC-CHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccE-EEEEEchHhcCCC-CHHHHHh
Confidence 55666665555 89999999999985 556666666666654 567 8999999999752 1112221
Q ss_pred ----HHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 791 ----MEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 791 ----~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
..++.+++..+. .++++++.... .....++.+|++.+.+.++
T Consensus 162 ~~~~~~l~~l~~~~g~-----~~~~~~~~~~~------~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 162 NTENRALRELVAECGG-----RVCAFDNRATG------REQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp HCCCHHHHHHHHHTTT-----CEEECCTTCCH------HHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHcCC-----eEEEEeCCCCc------cccHHHHHHHHHHHHHHHH
Confidence 345666666653 34444443210 0012478899998887654
No 320
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.44 E-value=2.8e-13 Score=149.45 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=85.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc--C-------------------CcccccCh--HHH------hh
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH--H-------------------GTTITDWM--QQE------QE 56 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~--~-------------------~~~~~d~~--~~e------~~ 56 (1021)
....+|+++|.+|+|||||+++|+.........+.+. + |..+++.. ..+ +-
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 3457899999999999999999985443211000000 0 11111111 101 11
Q ss_pred ----hCceeeeeeeEEEeecccCceeEEEEcCCCCC-------------CcHHHHHHHhhccCeEE-EEEeCCCCCchhH
Q psy5021 57 ----RGITITSASVSIFWEVNKFKYMINIIDTPGHV-------------DFTIEVERSLRVLDGAV-IIICASSGIQPQT 118 (1021)
Q Consensus 57 ----rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~-------------~f~~~~~~~l~~~D~~i-lvvda~~g~~~~t 118 (1021)
.|++.....+.+... ....++||||||+. .|...+..+++.+|.+| +|+|++.+...+.
T Consensus 104 ~g~~~gi~~~~~~~~~~~~---~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~ 180 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSP---HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 180 (299)
T ss_dssp CSSTTCCCSCCEEEEEEET---TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH
T ss_pred cccCCCccccceEEEEeCC---CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhH
Confidence 233322222222221 13689999999974 35566778888888777 6999998887776
Q ss_pred H-HHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 119 E-TVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 119 ~-~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
. .+++.+...+.|+++|+||+|+..
T Consensus 181 ~~~~~~~~~~~~~~~i~V~NK~Dl~~ 206 (299)
T 2aka_B 181 ALKIAKEVDPQGQRTIGVITKLDLMD 206 (299)
T ss_dssp HHHHHHHHCTTCSSEEEEEECGGGSC
T ss_pred HHHHHHHhCCCCCeEEEEEEccccCC
Confidence 4 467777778899999999999864
No 321
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.44 E-value=6.3e-14 Score=155.95 Aligned_cols=154 Identities=15% Similarity=0.174 Sum_probs=103.6
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC-eEEEEEecCChhh----
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN-KHYAHVDCPGHAD---- 726 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-~~i~liDtpG~~~---- 726 (1021)
..++++|++|+|||||+++|++....+...+ ..|.+.....+..++ ..+.||||||+..
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~----------------ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~ 222 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYH----------------FTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ 222 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTT----------------SSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCC----------------ccccCceEEEEEeCCCceEEEecCCCCcccccc
Confidence 3689999999999999999998543222211 234444444566654 7899999999754
Q ss_pred ---hHHHHHHHhhhCCEEEEEEECCC----CCcHHHHHHHHHHHHc-----CCCeEEEEEeeccccchhhHHHHHHHHHH
Q psy5021 727 ---YIKNMITGAAQMDGAILVCSAVD----GPMPQTREHILLARQV-----GVPNIVVFLNKADCVQDKELLDLVEMEIR 794 (1021)
Q Consensus 727 ---~~~~~~~~~~~aD~ailVvDa~~----g~~~qt~e~l~~~~~~-----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~ 794 (1021)
+....+..+..+|++|+|+|+++ ....+...++..+..+ ++| +++|+||+|+.+..+ .+.
T Consensus 223 ~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p-~ilV~NK~Dl~~~~e-------~~~ 294 (342)
T 1lnz_A 223 GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP-QIIVANKMDMPEAAE-------NLE 294 (342)
T ss_dssp TTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSC-BCBEEECTTSTTHHH-------HHH
T ss_pred cchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCC-EEEEEECccCCCCHH-------HHH
Confidence 34556666778999999999986 2233334455555553 567 888999999976322 122
Q ss_pred HhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 795 ELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 795 ~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++.+.+.. ..+++++||+++. ++++|+++|.+.+.
T Consensus 295 ~l~~~l~~---~~~v~~iSA~tg~-----------gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 295 AFKEKLTD---DYPVFPISAVTRE-----------GLRELLFEVANQLE 329 (342)
T ss_dssp HHHHHCCS---CCCBCCCSSCCSS-----------TTHHHHHHHHHHHT
T ss_pred HHHHHhhc---CCCEEEEECCCCc-----------CHHHHHHHHHHHHh
Confidence 22222221 1468999999873 88888888877654
No 322
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=3.5e-13 Score=140.06 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=73.9
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
....+|+++|.+|+|||||+++|+.....+.. ++ + .-|.+... ..+.+ ++..+.+.+|||+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~-----------~~-~---~~g~d~~~--~~i~~--~~~~~~l~~~Dt~ 95 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDS-----------DC-E---VLGEDTYE--RTLMV--DGESATIILLDMW 95 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCC-----------C-------CCTTEEE--EEEEE--TTEEEEEEEECCT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------cC-C---ccceeeEE--EEEEE--CCeeeEEEEeecC
Confidence 34578999999999999999999632222111 00 0 01111111 12222 2335678899999
Q ss_pred CCCC-cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhh----cCCCEEEEEeCcCCC
Q psy5021 86 GHVD-FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~-f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~----~~~p~iiviNK~D~~ 142 (1021)
|... +......+++.+|++|+|+|.++.........| ..+.. .++|+++|+||+|+.
T Consensus 96 g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 96 ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp TTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred CCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 9877 333334456789999999999874333322223 33332 379999999999984
No 323
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.42 E-value=3.3e-13 Score=159.85 Aligned_cols=158 Identities=19% Similarity=0.098 Sum_probs=111.1
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+.+.+.++|.+++|||||+++|++..... ...|++.....++..+..+.||||||+++|..
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-------------------~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 381 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVT-------------------TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP 381 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCC-------------------CCCCSSEEEEEEESSSCEEEEEEECCCGGGSG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCC-------------------cCCccceeEEEEEeCCEEEEEEECCCcHHHHH
Confidence 45677899999999999999999754110 01144445556777888999999999999998
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQT-REHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt-~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
.+..+++.+|++|+|+|+++....+. .+.+..+.. .++| +|||+||+|+.+... .+ ++...+.......
T Consensus 382 ~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~-~~----~~~~~~~~~~~~~ 455 (497)
T 3lvq_E 382 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMK-PH----EIQEKLGLTRIRD 455 (497)
T ss_dssp GGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE-EEEEEECCSSSSCCC-HH----HHHHHTTCTTCCS
T ss_pred HHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCc-EEEEEECCCCCcCCC-HH----HHHHHhchhhhhc
Confidence 88889999999999999998643322 333333322 3677 999999999975221 12 2222222111222
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
..++++++||++| +|+++++++|.+.+.
T Consensus 456 ~~~~~~~~SA~~g-----------~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 456 RNWYVQPSCATSG-----------DGLYEGLTWLTSNYK 483 (497)
T ss_dssp SCEEEEECBTTTT-----------BTHHHHHHHHHHHCC
T ss_pred CCeEEEEEECCCC-----------CCHHHHHHHHHHHHH
Confidence 3568999999988 489999999987653
No 324
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.41 E-value=1.6e-12 Score=146.16 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=75.9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
.++.|+|+|++|+|||||+++|..... ..+...+.|.+.....+.+. +..+.++||||
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~------------------~~~~~~~~T~d~~~~~i~~~----g~~v~l~DT~G 235 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ------------------KVDTKLFTTMSPKRYAIPIN----NRKIMLVDTVG 235 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------------------------CCSCEEEEEET----TEEEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc------------------cccCCcccccCCEEEEEEEC----CEEEEEEeCCC
Confidence 456799999999999999999963211 01122345665555566776 67899999999
Q ss_pred CCCc--------HHHHHHHhhccCeEEEEEeCCCCC--ch-hH---HHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 87 HVDF--------TIEVERSLRVLDGAVIIICASSGI--QP-QT---ETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 87 ~~~f--------~~~~~~~l~~~D~~ilvvda~~g~--~~-~t---~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
+... ...+...+..+|++++|+|++++. .. +. ..+++.....++|+++|.||+|+...
T Consensus 236 ~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 236 FIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp BCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred chhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence 8431 123445678999999999998764 22 22 22233333357899999999998644
No 325
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.41 E-value=9.9e-13 Score=147.25 Aligned_cols=117 Identities=15% Similarity=0.043 Sum_probs=80.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
....+|+++|..|+|||||+++|....-.... .+ |+.... ...+..++..+.+++||||
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~-------------------~~-t~~~~~-~~~~~~~~~~~~~~l~Dt~ 211 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEY-------------------IP-TVFDNY-SANVMVDGKPVNLGLWDTA 211 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSC-------------------CC-CSEEEE-EEEEEETTEEEEEEEEEEC
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCccc-------------------CC-ccccee-EEEEEECCEEEEEEEEeCC
Confidence 34578999999999999999999743211000 01 111111 1112223345678899999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH-HH-HHHhhc--CCCEEEEEeCcCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET-VW-FQSQKY--KVPKMIFVNKMDRIG 143 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~-~~-~~~~~~--~~p~iiviNK~D~~~ 143 (1021)
|+.+|...+..+++.+|++++|+|+++........ .| ..+... ++|+++|+||+|+..
T Consensus 212 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRD 273 (332)
T ss_dssp CCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHT
T ss_pred CchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccc
Confidence 99999988888999999999999999865444332 23 333333 899999999999853
No 326
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.40 E-value=1.3e-13 Score=159.67 Aligned_cols=151 Identities=19% Similarity=0.179 Sum_probs=100.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH--
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK-- 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~-- 729 (1021)
+.++++|.+|+|||||+|+|++....+. ....|+|.+.....+..++..+.||||||+.++..
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v---------------~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~v 289 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIV---------------TDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQV 289 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCC---------------SCCTTCCHHHHHHEEEETTEEEEECC-----------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccc---------------cCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHH
Confidence 5689999999999999999998542211 11235666666666777889999999999877532
Q ss_pred ------HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccC
Q psy5021 730 ------NMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803 (1021)
Q Consensus 730 ------~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1021)
.+..++..+|++++|+|++++...+..+++..+. ..| +|+|+||+|+.+.... . .++.+.
T Consensus 290 e~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~p-iivV~NK~Dl~~~~~~-~--------~~~~~~-- 355 (462)
T 3geh_A 290 EKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRP-LILVMNKIDLVEKQLI-T--------SLEYPE-- 355 (462)
T ss_dssp ---------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSC-EEEEEECTTSSCGGGS-T--------TCCCCT--
T ss_pred HHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCc-EEEEEECCCCCcchhh-H--------HHHHhc--
Confidence 2333467899999999999988777766666543 356 8999999999763211 1 111111
Q ss_pred CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 804 GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 804 ~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
...+++++||++| .|+++|++.|.+.+.
T Consensus 356 -~~~~~i~iSAktg-----------~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 356 -NITQIVHTAAAQK-----------QGIDSLETAILEIVQ 383 (462)
T ss_dssp -TCCCEEEEBTTTT-----------BSHHHHHHHHHHHHT
T ss_pred -cCCcEEEEECCCC-----------CCHHHHHHHHHHHHh
Confidence 2357899999988 388999998877553
No 327
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.39 E-value=1.1e-12 Score=147.64 Aligned_cols=158 Identities=23% Similarity=0.252 Sum_probs=101.8
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh--------
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH-------- 724 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~-------- 724 (1021)
+++++|.+|+|||||+|+|++... ..+...+.|.+.....+..++..+.+|||||+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~----------------~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~l 244 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ----------------KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQI 244 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc----------------cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHH
Confidence 478999999999999999998531 11223356777777777788889999999997
Q ss_pred -hhhHHHHHHHhhhCCEEEEEEECCCCC--c-HHHHHHHHHHHHc---CCCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 725 -ADYIKNMITGAAQMDGAILVCSAVDGP--M-PQTREHILLARQV---GVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 725 -~~~~~~~~~~~~~aD~ailVvDa~~g~--~-~qt~e~l~~~~~~---~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
+.| +.+...+..+|++++|+|++++. . .+.......+... ++| +|+|.||+|+.+.. .......+..+.
T Consensus 245 ve~f-~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p-~ilV~NK~Dl~~~~--~~~~~~~~~~l~ 320 (364)
T 2qtf_A 245 VDAF-FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKP-ILVTLNKIDKINGD--LYKKLDLVEKLS 320 (364)
T ss_dssp HHHH-HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCC-EEEEEECGGGCCSC--HHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCC-EEEEEECCCCCCch--HHHHHHHHHHHH
Confidence 233 34556688999999999998754 2 2222223344443 567 89999999997532 111112222222
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
+.+. ..+.+++++||+++ .|++.|++.|.+.+.
T Consensus 321 ~~l~--~~~~~~~~~SA~~g-----------~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 321 KELY--SPIFDVIPISALKR-----------TNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHC--SCEEEEEECBTTTT-----------BSHHHHHHHHHHHHH
T ss_pred HHhc--CCCCcEEEEECCCC-----------cCHHHHHHHHHHHhc
Confidence 3221 11346899999987 388899988876553
No 328
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.39 E-value=4.8e-13 Score=149.82 Aligned_cols=158 Identities=18% Similarity=0.110 Sum_probs=105.4
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeE--EEEEecCChhhhHH
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKH--YAHVDCPGHADYIK 729 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~--i~liDtpG~~~~~~ 729 (1021)
+.+.++|.+++|||||+++|++..... ...+.+.+.....+..++.. +.||||||+++|..
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 218 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAFPG-----------------EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR 218 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCC-----------------SCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTT
T ss_pred eEEEEECCCCCChHHHHHHHHhCCCCc-----------------ccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhH
Confidence 567888999999999999998643110 01122222333334455554 45999999999988
Q ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEeeccccchhhHHHHH---------HHHHHHh
Q psy5021 730 NMITGAAQMDGAILVCSAVDGPMPQTR--EHILLARQV--GVPNIVVFLNKADCVQDKELLDLV---------EMEIREL 796 (1021)
Q Consensus 730 ~~~~~~~~aD~ailVvDa~~g~~~qt~--e~l~~~~~~--~ip~iIvviNK~Dl~~~~~~~~~~---------~~~~~~~ 796 (1021)
.+..+++.+|++++|+|+++....+.. .++..+... ++| +++|+||+|+.+.....+.. ..+...+
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 297 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 297 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCc-EEEEEEchhcccccchhhhccccccccccHHHHHHH
Confidence 888888999999999999875443332 233444444 677 99999999987532211111 1233444
Q ss_pred hhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 797 LTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.+..++ .+++++||++| .|++++++.|.+.+
T Consensus 298 ~~~~~~----~~~~~~Sa~~~-----------~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 298 AKEIGA----VKYLECSALTQ-----------RGLKTVFDEAIRAV 328 (332)
T ss_dssp HHHTTC----SEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred HHHcCC----cEEEEecCCCC-----------cCHHHHHHHHHHHH
Confidence 444442 37999999987 38899998887643
No 329
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.39 E-value=1e-12 Score=134.71 Aligned_cols=117 Identities=14% Similarity=0.103 Sum_probs=72.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
....|+++|.+|+|||||+++|......+... + ..-|.+... ..+.+ ++....+.+|||+|
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-----------~----~~~~~~~~~--~~~~~--~~~~~~l~~~Dt~~ 65 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-----------X----EVLGEDTYE--RTLMV--DGESATIILLDMWE 65 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-------------------GGGCTTEEE--EEEEE--TTEEEEEEEECCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-----------c----cccceeEEE--EEEEE--CCeEEEEEEEEecc
Confidence 45689999999999999999997544332210 0 001112111 12223 23356788999999
Q ss_pred CCC-cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh----hcCCCEEEEEeCcCCC
Q psy5021 87 HVD-FTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ----KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~-f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~----~~~~p~iiviNK~D~~ 142 (1021)
... +......+++.+|++++|+|.++.........| ..+. ..++|+++|.||+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 66 NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp C----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred CcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 865 323344567889999999999874333332223 3332 2479999999999974
No 330
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.39 E-value=1.4e-12 Score=142.17 Aligned_cols=144 Identities=15% Similarity=0.165 Sum_probs=91.4
Q ss_pred eeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH---HH
Q psy5021 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK---NM 731 (1021)
Q Consensus 655 g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~---~~ 731 (1021)
-.+|..++|||||++++.+... ..+....+.|+......+. ....+.+|||||+++|.. .+
T Consensus 3 vllGdsgvGKTSLl~~~~~~~~---------------~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~ 66 (331)
T 3r7w_B 3 LLMGVRRCGKSSICKVVFHNMQ---------------PLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDS 66 (331)
T ss_dssp EEECSTTSSTTHHHHHHHSCCC---------------SGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHH
T ss_pred EEECCCCCCHHHHHHHHHcCCC---------------CCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhh
Confidence 4678899999999998775321 0011112334443333342 346789999999999964 45
Q ss_pred HHHhhhCCEEEEEEECCCCCcHHHHHHHHH----HHH--cCCCeEEEEEeeccccchhhHH---HHHHHHHHHhhhcccc
Q psy5021 732 ITGAAQMDGAILVCSAVDGPMPQTREHILL----ARQ--VGVPNIVVFLNKADCVQDKELL---DLVEMEIRELLTEYDF 802 (1021)
Q Consensus 732 ~~~~~~aD~ailVvDa~~g~~~qt~e~l~~----~~~--~~ip~iIvviNK~Dl~~~~~~~---~~~~~~~~~~l~~~~~ 802 (1021)
..++++++++|+|+|+++. +....++|.. +.. -++| +++++||+|+.+++++. ..+..+..+.+...++
T Consensus 67 ~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ip-illvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~ 144 (331)
T 3r7w_B 67 ERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSIN-IEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGL 144 (331)
T ss_dssp HHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCE-EEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSC
T ss_pred hhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCc-EEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcc
Confidence 7889999999999999987 5455554432 222 2567 89999999998643321 2233333333333222
Q ss_pred CCCceEEEEecccc
Q psy5021 803 DGENTKIVIGSALL 816 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~ 816 (1021)
...+++++.+||+.
T Consensus 145 ~~~~i~f~eTSAkd 158 (331)
T 3r7w_B 145 DGVQVSFYLTSIFD 158 (331)
T ss_dssp SCCCEEEECCCSSS
T ss_pred cccCceEEEeccCC
Confidence 22357899999985
No 331
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.38 E-value=8.6e-13 Score=134.27 Aligned_cols=119 Identities=17% Similarity=0.189 Sum_probs=72.2
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec-ccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV-NKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-~~~~~~i~liDtPG~ 87 (1021)
.+|+++|..|+|||||+++|......... +....+.+......+.+.. ++..+.+.+|||||+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~----------------~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLG----------------MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGR 66 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC---------------------------CSEEEEEEEC---------CEEEEEEECSH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCC----------------CcceeccEEeEEeeeccccCCCCceEEEEEecCCC
Confidence 36999999999999999999532111000 0011111111111111110 123678999999999
Q ss_pred CCcHHHHHHHhhccCeEEEEEeCCCCCc-hhHHHHH-HHHhh--cCCCEEEEEeCcCCCC
Q psy5021 88 VDFTIEVERSLRVLDGAVIIICASSGIQ-PQTETVW-FQSQK--YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f~~~~~~~l~~~D~~ilvvda~~g~~-~~t~~~~-~~~~~--~~~p~iiviNK~D~~~ 143 (1021)
.+|......+++.+|++++|+|.+++.. ......| ..+.. .+.|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 67 EEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSD 126 (184)
T ss_dssp HHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCC
T ss_pred HHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCccc
Confidence 8888777888899999999999987632 2222223 22222 4789999999999863
No 332
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.37 E-value=2.4e-12 Score=145.39 Aligned_cols=115 Identities=20% Similarity=0.172 Sum_probs=75.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
....+|+++|++|+|||||+++|.... ...+. ..+.|.......+.+. +..+.+||||
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~---~~~~~---------------~~~~t~~~~~~~~~~~----~~~~~l~Dt~ 222 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK---PEIAS---------------YPFTTRGINVGQFEDG----YFRYQIIDTP 222 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC---CEEEC---------------CTTCSSCEEEEEEEET----TEEEEEEECT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC---CccCC---------------CCCeeeceeEEEEEec----CceEEEEeCC
Confidence 356789999999999999999995322 11110 1123333333344444 6789999999
Q ss_pred CCCCcHH--------HHHHHh-hccCeEEEEEeCCCCC--chhH-HHHHHHHhh--cCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTI--------EVERSL-RVLDGAVIIICASSGI--QPQT-ETVWFQSQK--YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~--------~~~~~l-~~~D~~ilvvda~~g~--~~~t-~~~~~~~~~--~~~p~iiviNK~D~~ 142 (1021)
|+.++.. ....++ ..+|++|+|+|++++. .... ...+..+.. .++|+++|+||+|+.
T Consensus 223 G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 223 GLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred CccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 9976531 222233 4689999999988753 3333 233343332 289999999999985
No 333
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.37 E-value=2.2e-12 Score=139.20 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=80.3
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
+..+|+++|++|+|||||+++|+........ ...+.|.......+.+. +..++||||||
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~-----------------~~~~~t~~~~~~~~~~~----~~~l~liDTpG 93 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS-----------------PFQAEGLRPVMVSRTMG----GFTINIIDTPG 93 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCC-----------------SSCC-CCCCEEEEEEET----TEEEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccC-----------------CCCCcceeeEEEEEEEC----CeeEEEEECCC
Confidence 4679999999999999999999854321111 12344666666666777 78999999999
Q ss_pred CCCcHHHHHHHhh---------ccCeEEEEEeCCCC-CchhHHHHHHHHhhc-----CCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLR---------VLDGAVIIICASSG-IQPQTETVWFQSQKY-----KVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~---------~~D~~ilvvda~~g-~~~~t~~~~~~~~~~-----~~p~iiviNK~D~~ 142 (1021)
+.+|......+++ .+|++|+|+|.... .......+++.+... ..|+++|+||+|+.
T Consensus 94 ~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 94 LVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp SEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred CCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 9888543333332 78999999887653 444444555555432 24999999999985
No 334
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.36 E-value=2.3e-12 Score=137.05 Aligned_cols=166 Identities=12% Similarity=0.132 Sum_probs=101.3
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCCh-----
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGH----- 724 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~----- 724 (1021)
+.+.++++|.+++|||||+|+|++..... ......++|.+.....+...+..+.||||||+
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~ 93 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFH--------------SGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEV 93 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSC--------------C-------CCSCEEEEEEETTEEEEEEECCSCC----
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCc--------------cCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCC
Confidence 45788999999999999999999854211 11222356777777778888999999999994
Q ss_pred ------hhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHH-----HcCCCeEEEEEeeccccchhhHHHHH---H
Q psy5021 725 ------ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLAR-----QVGVPNIVVFLNKADCVQDKELLDLV---E 790 (1021)
Q Consensus 725 ------~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~-----~~~ip~iIvviNK~Dl~~~~~~~~~~---~ 790 (1021)
+.+...+..++..+|++|+|+|++. ......+.+..+. ....| +++|+||+|+.......+.+ .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~~~i~~~~ 171 (239)
T 3lxx_A 94 PNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSF-MILIFTRKDDLGDTNLHDYLREAP 171 (239)
T ss_dssp -CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGG-EEEEEECGGGC------------C
T ss_pred CHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccce-EEEEEeCCccCCcccHHHHHHhch
Confidence 3455555555667899999999875 3334444444332 23346 89999999987632221111 2
Q ss_pred HHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 791 MEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 791 ~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+.++.+++..+. .++++++..+.. ....++.+|++.+...+
T Consensus 172 ~~l~~l~~~~~~-----~~~~~~~~~~~~------~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 172 EDIQDLMDIFGD-----RYCALNNKATGA------EQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp HHHHHHHHHHSS-----SEEECCTTCCHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-----EEEEEECCCCcc------ccHHHHHHHHHHHHHHH
Confidence 345666666553 345555542200 01136778888776544
No 335
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.35 E-value=1.7e-12 Score=133.84 Aligned_cols=117 Identities=18% Similarity=0.161 Sum_probs=79.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
+...+|+++|+.|+|||||+++|........ ....++.......+.+. +....+.+||||
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~------------------~~~t~~~~~~~~~i~~~--g~~~~~~i~Dt~ 62 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE------------------SKSTIGVEFATRSIQVD--GKTIKAQIWDTA 62 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---------------------CCCSCEEEEEEEEET--TEEEEEEEEECS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCC------------------CCCccceeEEEEEEEEC--CEEEEEEEEECC
Confidence 4568899999999999999999975322111 01111222222233333 335678899999
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
|+..|...+...++.+|++++|+|.++.........| ..+. ..+.|+++++||+|+.
T Consensus 63 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 63 GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp SGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 9999887778888999999999999875443332223 2232 2478999999999984
No 336
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.33 E-value=6.8e-13 Score=158.30 Aligned_cols=120 Identities=14% Similarity=0.147 Sum_probs=79.9
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeee----EEEeecccCceeEEE
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV----SIFWEVNKFKYMINI 81 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~----~~~~~~~~~~~~i~l 81 (1021)
.+..+|+++|.+|+|||||+++|....-... + ....|.++..... .+....++....+++
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~-------------~---~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i 102 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPK-------------E---SQTHGLNVVTKQAPNIKGLENDDELKECLFHF 102 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC---------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCC-------------C---CCccceEEEEeccccccceeecCCCceEEEEE
Confidence 3456899999999999999999973221000 0 0111222211100 011111234688999
Q ss_pred EcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhc--CCCEEEEEeCcCCCC
Q psy5021 82 IDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY--KVPKMIFVNKMDRIG 143 (1021)
Q Consensus 82 iDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~--~~p~iiviNK~D~~~ 143 (1021)
|||||+..|.......++.+|++|+|+|++.. ......+..+... +.|+++|+||+|+..
T Consensus 103 ~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 103 WDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp ECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred EECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 99999999998888899999999999999865 3444455555554 499999999999864
No 337
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.32 E-value=1.8e-11 Score=127.16 Aligned_cols=160 Identities=19% Similarity=0.198 Sum_probs=101.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChh----
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHA---- 725 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~---- 725 (1021)
+....+++|.+++|||||+++|++... ........|.|.......+ .+ .+.+|||||+.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~--------------~~~~~~~~G~~~~~~~~~~--~~-~~~l~Dt~G~~~~~~ 87 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKS--------------LARTSKTPGRTQLINLFEV--AD-GKRLVDLPGYGYAEV 87 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC---------------------------CCEEEEEE--ET-TEEEEECCCCC----
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc--------------cccccCCCccceeeEEEEe--cC-CEEEEECcCCccccc
Confidence 346789999999999999999997431 1112234466654443333 23 67899999984
Q ss_pred ------hhHHHHHHHh---hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHh
Q psy5021 726 ------DYIKNMITGA---AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIREL 796 (1021)
Q Consensus 726 ------~~~~~~~~~~---~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~ 796 (1021)
.|...+..++ ..+|.+++|+|++.+......+...++...++| ++++.||+|+....++ ......+..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~nK~D~~s~~~~-~~~~~~~~~~ 165 (210)
T 1pui_A 88 PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIA-VLVLLTKADKLASGAR-KAQLNMVREA 165 (210)
T ss_dssp --CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCHHHH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEecccCCCchhH-HHHHHHHHHH
Confidence 2333332333 468999999999987766555566667778899 7888999998763222 1112344444
Q ss_pred hhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 797 LTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+...+. .+.++|+||+++ .+++++++.|.+.+
T Consensus 166 ~~~~~~---~~~~~~~Sal~~-----------~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 166 VLAFNG---DVQVETFSSLKK-----------QGVDKLRQKLDTWF 197 (210)
T ss_dssp HGGGCS---CEEEEECBTTTT-----------BSHHHHHHHHHHHH
T ss_pred HHhcCC---CCceEEEeecCC-----------CCHHHHHHHHHHHH
Confidence 444332 367899999977 37888888887644
No 338
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.32 E-value=5.2e-13 Score=159.32 Aligned_cols=159 Identities=17% Similarity=0.178 Sum_probs=101.6
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeee------EEEE--eeCCeEEEEE
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTS------HVEY--ESENKHYAHV 719 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~------~~~~--~~~~~~i~li 719 (1021)
..+.+.++++|.+++|||||+++|++.... .....+.|.++... ...+ +..+..+.+|
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~--------------~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 103 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFD--------------PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFW 103 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCC--------------CCCCCccceEEEEeccccccceeecCCCceEEEEEE
Confidence 345678899999999999999999974311 11122223333211 0111 1225789999
Q ss_pred ecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC--CCeEEEEEeeccccchhhHHHHHHHHHHHhh
Q psy5021 720 DCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVG--VPNIVVFLNKADCVQDKELLDLVEMEIRELL 797 (1021)
Q Consensus 720 DtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~--ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l 797 (1021)
||||++.|......+++.+|++|+|+|++.. .....++..+...+ .| +|+|+||+|+.+..... .+++.+.+
T Consensus 104 Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~p-vilV~NK~Dl~~~~~v~---~~~~~~~~ 177 (535)
T 3dpu_A 104 DFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSP-VIVVMNKIDENPSYNIE---QKKINERF 177 (535)
T ss_dssp CCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCC-EEEEECCTTTCTTCCCC---HHHHHHHC
T ss_pred ECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCC-EEEEEECCCcccccccC---HHHHHHHH
Confidence 9999999988888888999999999999864 44556666666655 78 89999999997532211 23445555
Q ss_pred hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 798 TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 798 ~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
...+ .+++++||++|. |+++|++.|.+.+
T Consensus 178 ~~~~-----~~~~~vSA~~g~-----------gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 178 PAIE-----NRFHRISCKNGD-----------GVESIAKSLKSAV 206 (535)
T ss_dssp GGGT-----TCEEECCC----------------CTTHHHHHHHHH
T ss_pred HhcC-----CceEEEecCccc-----------CHHHHHHHHHHHH
Confidence 5554 468999999884 5666666665533
No 339
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.31 E-value=5.4e-12 Score=132.06 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=78.8
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
..+..+|+++|+.|+|||||+++|+........ ..+ ..|+... +. ...+++|||
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~----------~~~-------~~~~~~~-----~~----~~~~~l~Dt 62 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV----------VSQ-------EPLSAAD-----YD----GSGVTLVDF 62 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBC----------CCS-------SCEEETT-----GG----GSSCEEEEC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCee----------eec-------CceEEEE-----ee----CceEEEEEC
Confidence 456789999999999999999999754321100 000 0111111 12 678999999
Q ss_pred CCCCCcHHHHHHHhhc----cCeEEEEEeCC-C--CCchhHHHHHHHHh------hcCCCEEEEEeCcCCCCCC
Q psy5021 85 PGHVDFTIEVERSLRV----LDGAVIIICAS-S--GIQPQTETVWFQSQ------KYKVPKMIFVNKMDRIGAN 145 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~----~D~~ilvvda~-~--g~~~~t~~~~~~~~------~~~~p~iiviNK~D~~~~~ 145 (1021)
||+.+|...+..+++. +|++|+|+|++ + ........+..... ..++|+++|+||+|+....
T Consensus 63 ~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 63 PGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp CCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred CCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 9999999888888877 89999999998 3 22222222222221 2589999999999998664
No 340
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.31 E-value=7e-12 Score=141.57 Aligned_cols=155 Identities=21% Similarity=0.219 Sum_probs=101.8
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH-
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI- 728 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~- 728 (1021)
...+++++|.+|+|||||+|+|++....... ..+.|.+.....+...+..+.+|||||+.++.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 229 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIAS----------------YPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI 229 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEEC----------------CTTCSSCEEEEEEEETTEEEEEEECTTTSSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCC----------------CCCeeeceeEEEEEecCceEEEEeCCCccccch
Confidence 4568899999999999999999985421111 12334444455566667889999999985431
Q ss_pred -------HHHHHH-hhhCCEEEEEEECCCCC--c-HHHHHHHHHHHH-c-CCCeEEEEEeeccccchhhHHHHHHHHHHH
Q psy5021 729 -------KNMITG-AAQMDGAILVCSAVDGP--M-PQTREHILLARQ-V-GVPNIVVFLNKADCVQDKELLDLVEMEIRE 795 (1021)
Q Consensus 729 -------~~~~~~-~~~aD~ailVvDa~~g~--~-~qt~e~l~~~~~-~-~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~ 795 (1021)
...... ...+|.+++|+|+++.. . ....+++..+.. . +.| +|+|+||+|+..... .+ +...
T Consensus 230 ~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p-iilV~NK~Dl~~~~~-~~----~~~~ 303 (357)
T 2e87_A 230 SERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP-FLVVINKIDVADEEN-IK----RLEK 303 (357)
T ss_dssp TTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC-EEEEECCTTTCCHHH-HH----HHHH
T ss_pred hhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC-EEEEEECcccCChHH-HH----HHHH
Confidence 122222 34699999999987643 2 222344444443 2 677 999999999986322 22 2233
Q ss_pred hhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 796 LLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 796 ~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+++..+ .+++++||++| +|+++|+++|.+.+
T Consensus 304 ~~~~~~-----~~~~~iSA~~g-----------~gi~~l~~~i~~~l 334 (357)
T 2e87_A 304 FVKEKG-----LNPIKISALKG-----------TGIDLVKEEIIKTL 334 (357)
T ss_dssp HHHHTT-----CCCEECBTTTT-----------BTHHHHHHHHHHHH
T ss_pred HHHhcC-----CCeEEEeCCCC-----------cCHHHHHHHHHHHH
Confidence 333322 46899999988 38888888887644
No 341
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=5.5e-12 Score=131.06 Aligned_cols=157 Identities=19% Similarity=0.152 Sum_probs=95.9
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCChhhh-
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGHADY- 727 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~~~~- 727 (1021)
.+.+.++|.+++|||||+++|++....... .. ...|.+... ..+..++. .+.+|||+|.+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~------------~~-~~~g~d~~~--~~i~~~~~~~~l~~~Dt~g~~~~~ 101 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDS------------DC-EVLGEDTYE--RTLMVDGESATIILLDMWENKGEN 101 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCC------------C----CCTTEEE--EEEEETTEEEEEEEECCTTTTHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCC------------cC-CccceeeEE--EEEEECCeeeEEEEeecCCCcchh
Confidence 467889999999999999999864321110 00 112333222 23344444 4678999998773
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPM-PQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~-~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
......+++.+|++|+|+|.++... ....+++..+.. .++| +|+|+||+|+.+...... .+...+....+
T Consensus 102 ~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~r~v~~---~e~~~~a~~~~- 176 (211)
T 2g3y_A 102 EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRCREVSV---SEGRACAVVFD- 176 (211)
T ss_dssp HHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTCGGGCCSCH---HHHHHHHHHHT-
T ss_pred hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEChHHhcCceEeH---HHHHHHHHHcC-
Confidence 3233334577999999999987332 222333333433 2677 999999999965221111 11222223333
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++| .|++++++.|.+.+
T Consensus 177 ----~~~~e~SAk~g-----------~~v~elf~~l~~~i 201 (211)
T 2g3y_A 177 ----CKFIETSAAVQ-----------HNVKELFEGIVRQV 201 (211)
T ss_dssp ----CEEEECBTTTT-----------BSHHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence 57899999988 38899998887644
No 342
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.30 E-value=1.2e-11 Score=128.67 Aligned_cols=115 Identities=12% Similarity=0.134 Sum_probs=74.5
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
...-.+|+++|+.|+|||||+++|+.... ... .....|.|.... .+.+. + .+.++||
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~-~~~---------------~~~~~G~~~~~~--~~~~~----~-~~~l~Dt 79 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKS-LAR---------------TSKTPGRTQLIN--LFEVA----D-GKRLVDL 79 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-----------------------------CCEE--EEEEE----T-TEEEEEC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCc-ccc---------------ccCCCccceeeE--EEEec----C-CEEEEEC
Confidence 34456899999999999999999852110 000 001223333221 22333 2 5789999
Q ss_pred CCCCCc----------HHHHHHHh---hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDF----------TIEVERSL---RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f----------~~~~~~~l---~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
||+.++ ...+..++ +.+|++++++|+..+.......+++++...++|.+++.||+|+.
T Consensus 80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKL 150 (210)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCC
Confidence 998642 22222333 57899999999998877666667777778899999999999975
No 343
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.30 E-value=5.7e-12 Score=129.02 Aligned_cols=118 Identities=18% Similarity=0.152 Sum_probs=79.3
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcC
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDT 84 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 84 (1021)
.+....|+++|+.|+|||||+++|......... ...++.......+.+. +....+.+|||
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~------------------~~t~~~~~~~~~i~~~--g~~~~~~i~Dt 85 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES------------------KSTIGVEFATRSIQVD--GKTIKAQIWDT 85 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSC------------------CCCCSEEEEEEEEEET--TEEEEEEEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC------------------CCccceEEEEEEEEEC--CEEEEEEEEEC
Confidence 345678999999999999999999753221110 0112222222333343 33456778999
Q ss_pred CCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH-HHHh---hcCCCEEEEEeCcCCC
Q psy5021 85 PGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW-FQSQ---KYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 85 PG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~---~~~~p~iiviNK~D~~ 142 (1021)
||+..|...+...++.+|++++|+|.++....+....| ..+. ..+.|+++++||+|+.
T Consensus 86 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 86 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp CSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 99999988888888999999999998865332222223 2222 2468999999999984
No 344
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.29 E-value=7.3e-12 Score=141.08 Aligned_cols=124 Identities=18% Similarity=0.204 Sum_probs=64.0
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.-+|+|+|+.|+|||||+++|+.... . .. ...+....+..+++++.. ....+..++....+++|||||+
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~-~-~~-------~~~~~~~~~~~~ti~~~~--~~~~~~~~~~~~~l~i~DTpG~ 105 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDL-Y-PE-------RVIPGAAEKIERTVQIEA--STVEIEERGVKLRLTVVDTPGY 105 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC------------------------CEEEEE--EEEC----CEEEEEEEEC----
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCC-C-CC-------CcccCCCcccCCceeEEE--EEEEeecCCcccceEEEEeccc
Confidence 35799999999999999999853211 1 00 011111112223333332 2222222233457999999999
Q ss_pred CCcH-------HHHH-------HHhhcc-------------CeEEEEEeC-CCCCchhHHHHHHHHhhcCCCEEEEEeCc
Q psy5021 88 VDFT-------IEVE-------RSLRVL-------------DGAVIIICA-SSGIQPQTETVWFQSQKYKVPKMIFVNKM 139 (1021)
Q Consensus 88 ~~f~-------~~~~-------~~l~~~-------------D~~ilvvda-~~g~~~~t~~~~~~~~~~~~p~iiviNK~ 139 (1021)
.++. ..+. .+++.+ |+++++|+. ..+.......+++.+ ..++|+|+|+||+
T Consensus 106 gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~ 184 (361)
T 2qag_A 106 GDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKA 184 (361)
T ss_dssp ----------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECC
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECC
Confidence 4442 2222 444443 357788876 556666665555554 4689999999999
Q ss_pred CCCC
Q psy5021 140 DRIG 143 (1021)
Q Consensus 140 D~~~ 143 (1021)
|+..
T Consensus 185 Dl~~ 188 (361)
T 2qag_A 185 DTLT 188 (361)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 9863
No 345
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.29 E-value=2.1e-11 Score=132.11 Aligned_cols=124 Identities=15% Similarity=0.079 Sum_probs=81.6
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
...+|+++|++|+|||||+++|+........ ...+.|.......+.+. ++.+++|||||
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-----------------~~~~~t~~~~~~~~~~~----~~~l~iiDTpG 96 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSIS-----------------PFQSEGPRPVMVSRSRA----GFTLNIIDTPG 96 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-----------------SSSCCCSSCEEEEEEET----TEEEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccc-----------------CCCCcceeeEEEEEeeC----CeEEEEEECCC
Confidence 4678999999999999999999843321111 01233444444445555 78999999999
Q ss_pred CCCcH---HHHHHHh------hccCeEEEEEeCCC-CCchhHHHHHHHHhhc-C----CCEEEEEeCcCCCCC---CHHH
Q psy5021 87 HVDFT---IEVERSL------RVLDGAVIIICASS-GIQPQTETVWFQSQKY-K----VPKMIFVNKMDRIGA---NYNN 148 (1021)
Q Consensus 87 ~~~f~---~~~~~~l------~~~D~~ilvvda~~-g~~~~t~~~~~~~~~~-~----~p~iiviNK~D~~~~---~~~~ 148 (1021)
+.+|. ......+ +.+|++|+|+|.+. .........++.+... + .|+++|+||+|+... ++++
T Consensus 97 ~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~ 176 (270)
T 1h65_A 97 LIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDE 176 (270)
T ss_dssp SEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHH
T ss_pred CCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHH
Confidence 98774 2222222 36999999988765 3444455565555432 2 699999999998643 3444
Q ss_pred HHH
Q psy5021 149 CII 151 (1021)
Q Consensus 149 ~~~ 151 (1021)
.++
T Consensus 177 ~~~ 179 (270)
T 1h65_A 177 FFS 179 (270)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 346
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.28 E-value=2.9e-12 Score=144.41 Aligned_cols=131 Identities=20% Similarity=0.156 Sum_probs=72.2
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHc---CCCcccccccCCcccc------cChH---HHhhhCceeeeeeeEEEe--
Q psy5021 5 VLYFRNIGIIAHVDAGKTTTTERILFYS---GSSHKIGEVHHGTTIT------DWMQ---QEQERGITITSASVSIFW-- 70 (1021)
Q Consensus 5 ~~~irni~iiG~~~~GKTTL~~~Ll~~~---~~~~~~g~~~~~~~~~------d~~~---~e~~rgiTi~~~~~~~~~-- 70 (1021)
..+.+.|+|+|++|+|||||+++|.... |.-...-..+.+.+.. |... .....+..+......-..
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 3467899999999999999999997432 2211111112211111 1000 001112222111100000
Q ss_pred ----------ecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcC
Q psy5021 71 ----------EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMD 140 (1021)
Q Consensus 71 ----------~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D 140 (1021)
..+..++.+.||||||... .....+..+|.+|+|+|+..+...+... ....++|.++|+||+|
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~ivVlNK~D 228 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK----KGVLELADIVVVNKAD 228 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEEEEECCC
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcCCEEEEECCC
Confidence 0011368899999999654 2334458999999999998765443221 1123469999999999
Q ss_pred CC
Q psy5021 141 RI 142 (1021)
Q Consensus 141 ~~ 142 (1021)
+.
T Consensus 229 l~ 230 (355)
T 3p32_A 229 GE 230 (355)
T ss_dssp GG
T ss_pred Cc
Confidence 85
No 347
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.27 E-value=8.4e-12 Score=152.27 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=55.5
Q ss_pred eeEEEEcCCCCCC---cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHH-HHhhcCCCEEEEEeCcCCC
Q psy5021 77 YMINIIDTPGHVD---FTIEVERSLRVLDGAVIIICASSGIQPQTETVWF-QSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 77 ~~i~liDtPG~~~---f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~-~~~~~~~p~iiviNK~D~~ 142 (1021)
..++||||||+.+ +...+..+++.+|++|+|+|++.+........|. .+...+.|+++|+||+|+.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccc
Confidence 4699999999754 4566778899999999999999988887777775 4566789999999999985
No 348
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.27 E-value=6.3e-12 Score=138.50 Aligned_cols=164 Identities=15% Similarity=0.075 Sum_probs=95.9
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccc-cc----cccccc----------c------CCchh----h------hh
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GE----VRAFDT----------I------DNAPE----E------KE 697 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~----~~~~~~----------~------d~~~~----e------~~ 697 (1021)
.....++++|.+++|||||+|+|++....... +. +..... . ..... + +.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 44568899999999999999999986532100 00 000000 0 00000 0 11
Q ss_pred ----cCceEeeeEEEEeeC-CeEEEEEecCChh-------------hhHHHHHHHhhhCCEEE-EEEECCCCCcHHHH-H
Q psy5021 698 ----RGITISTSHVEYESE-NKHYAHVDCPGHA-------------DYIKNMITGAAQMDGAI-LVCSAVDGPMPQTR-E 757 (1021)
Q Consensus 698 ----~G~Ti~~~~~~~~~~-~~~i~liDtpG~~-------------~~~~~~~~~~~~aD~ai-lVvDa~~g~~~qt~-e 757 (1021)
.|++.......+... ...++||||||+. .+...+..+++.+|.++ +|+|++.+...+.. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 233332222333333 4689999999963 45566777888888777 68999987766654 4
Q ss_pred HHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccc
Q psy5021 758 HILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLAL 818 (1021)
Q Consensus 758 ~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~ 818 (1021)
.+..+...+.| +++|+||+|+.+.... ..+.+...+..+ .....+++++||++|.
T Consensus 184 ~~~~~~~~~~~-~i~V~NK~Dl~~~~~~---~~~~~~~~~~~~--~~~~~~v~~~SA~~~~ 238 (299)
T 2aka_B 184 IAKEVDPQGQR-TIGVITKLDLMDEGTD---ARDVLENKLLPL--RRGYIGVVNRSQKDID 238 (299)
T ss_dssp HHHHHCTTCSS-EEEEEECGGGSCTTCC---CHHHHTTCSSCC--TTCEEECCCCCCBCTT
T ss_pred HHHHhCCCCCe-EEEEEEccccCCCCch---HHHHHhCCcCcC--CCCcEEEECCChhhcc
Confidence 55555556788 8999999999863221 111222211111 1112578899999874
No 349
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.27 E-value=3.1e-12 Score=133.96 Aligned_cols=143 Identities=19% Similarity=0.213 Sum_probs=86.8
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+...+.++|.+++|||||+++|++....... .....+++. ......+.+|||||+++|..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~-------------~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~~ 70 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-------------VSQEPLSAA-------DYDGSGVTLVDFPGHVKLRY 70 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBC-------------CCSSCEEET-------TGGGSSCEEEECCCCGGGTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCee-------------eecCceEEE-------EeeCceEEEEECCCcHHHHH
Confidence 4567889999999999999999974311100 000011111 11456789999999999988
Q ss_pred HHHHHhhh----CCEEEEEEECC-CC-CcHHHHHHHHHHHH-------cCCCeEEEEEeeccccchh---hHHHHHHHHH
Q psy5021 730 NMITGAAQ----MDGAILVCSAV-DG-PMPQTREHILLARQ-------VGVPNIVVFLNKADCVQDK---ELLDLVEMEI 793 (1021)
Q Consensus 730 ~~~~~~~~----aD~ailVvDa~-~g-~~~qt~e~l~~~~~-------~~ip~iIvviNK~Dl~~~~---~~~~~~~~~~ 793 (1021)
.+..+++. +|++|+|+|++ +. .+....+++..+.. .++| +++|+||+|+.... ...+.+.+++
T Consensus 71 ~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~l~~~~ 149 (218)
T 1nrj_B 71 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSELFTARPPSKIKDALESEI 149 (218)
T ss_dssp HHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCC-EEEEEEchHhcccCCHHHHHHHHHHHH
Confidence 88888877 89999999998 32 23334444433322 3677 99999999997632 2223333444
Q ss_pred HHhhhccccCCCceEEEEecccccc
Q psy5021 794 RELLTEYDFDGENTKIVIGSALLAL 818 (1021)
Q Consensus 794 ~~~l~~~~~~~~~~~ii~iSa~~~~ 818 (1021)
..+....+ .+++++||++|.
T Consensus 150 ~~~~~~~~-----~~~~~~Sa~~~~ 169 (218)
T 1nrj_B 150 QKVIERRK-----KSLNEVERKINE 169 (218)
T ss_dssp HHHHHHHH-----HHHHC-------
T ss_pred HHHHHHHh-----cccccccccccc
Confidence 44443333 457889999764
No 350
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.26 E-value=5e-12 Score=140.49 Aligned_cols=118 Identities=9% Similarity=-0.014 Sum_probs=73.9
Q ss_pred CCeEEEEEecCChhh-------------hHHHHHHHhhhCCEEEEEEEC-CCCCcHHH-HHHHHHHHHcCCCeEEEEEee
Q psy5021 712 ENKHYAHVDCPGHAD-------------YIKNMITGAAQMDGAILVCSA-VDGPMPQT-REHILLARQVGVPNIVVFLNK 776 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~-------------~~~~~~~~~~~aD~ailVvDa-~~g~~~qt-~e~l~~~~~~~ip~iIvviNK 776 (1021)
.+..+.||||||+.+ +...+..++..+|++++|+|+ +.+...+. ...+..+...+.| +++|+||
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~-~i~v~NK 207 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKR-TIGVITK 207 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSS-EEEEEEC
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCc-EEEEEcC
Confidence 346899999999753 566777888999999999997 55544333 3556666666888 8999999
Q ss_pred ccccchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 777 ADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 777 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
+|+.+.... ..+.+...+..+ ...++++|+.++.+.. ...++.++++.+.++++
T Consensus 208 ~Dl~~~~~~---~~~~~~~~~~~~-----~~~~~~v~~~sa~~~~-----~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 208 LDLMDKGTD---AMEVLTGRVIPL-----TLGFIGVINRSQEDII-----AKKSIRESLKSEILYFK 261 (315)
T ss_dssp TTSSCSSCC---CHHHHTTSSSCC-----TTCEEECCCCCHHHHS-----SSCCHHHHHHHHHHHHH
T ss_pred cccCCcchH---HHHHHhCCCccC-----CCCeEEEecCChhhhc-----cCCCHHHHHHHHHHHHh
Confidence 999863221 111222111111 1346677776654311 11377778877766554
No 351
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.26 E-value=7.1e-12 Score=128.33 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=81.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCC
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 85 (1021)
.+..+|+++|+.|+|||||+++|......... .. ...+++. .+. ...+.+||||
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~----------~~-----~~~~~~~-------~~~----~~~~~l~Dt~ 99 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV----------VS-----QEPLSAA-------DYD----GSGVTLVDFP 99 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------CCC----CTTCSEEEET
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCccc----------cc-----CCCceee-------eec----CCeEEEEECC
Confidence 44578999999999999999999753321100 00 0111111 113 6788999999
Q ss_pred CCCCcHHHHHHHhhc----cCeEEEEEeCCCCCch--hHHHHHHHHh-------hcCCCEEEEEeCcCCCCCC-HHHHHH
Q psy5021 86 GHVDFTIEVERSLRV----LDGAVIIICASSGIQP--QTETVWFQSQ-------KYKVPKMIFVNKMDRIGAN-YNNCII 151 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~----~D~~ilvvda~~g~~~--~t~~~~~~~~-------~~~~p~iiviNK~D~~~~~-~~~~~~ 151 (1021)
|+.+|...+..+++. +|++|+|+|++..... .....+.... ..++|+++|+||+|+.... ..+..+
T Consensus 100 G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 179 (193)
T 2ged_A 100 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD 179 (193)
T ss_dssp TCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred CCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHH
Confidence 999997777777765 8999999999822211 1112222221 1489999999999997643 566666
Q ss_pred HHHHHh
Q psy5021 152 DIKKKF 157 (1021)
Q Consensus 152 ~i~~~l 157 (1021)
.+.+.+
T Consensus 180 ~l~~~l 185 (193)
T 2ged_A 180 ALESEI 185 (193)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 352
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.26 E-value=5.3e-12 Score=132.44 Aligned_cols=128 Identities=18% Similarity=0.203 Sum_probs=73.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc--cCCcccccChHHHhhhCceeeeeeeEEEeec----------c
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV--HHGTTITDWMQQEQERGITITSASVSIFWEV----------N 73 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~--~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~----------~ 73 (1021)
.++++|+++|++|+|||||+++|+.......+.+.+ +.+. ..|....+ ..|+++..-.....+.. .
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~-~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVS-KADYERVR-RFGIKAEAISTGKECHLDAHMIYHRLKK 105 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCC-HHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTGGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCC-chhHHHHH-hCCCcEEEecCCceeecccHHHHHHHHh
Confidence 467899999999999999999998764322222222 1121 12221111 12443211100000000 1
Q ss_pred cCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 74 KFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 74 ~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
..++.+.+|||||+.+-... .-...+.+++|+|+..+... .|......+.|.++|+||+|+.
T Consensus 106 ~~~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp GTTCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGH
T ss_pred cCCCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCC
Confidence 12578999999995221100 01246889999999887532 3333444578999999999974
No 353
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.26 E-value=9.1e-12 Score=128.39 Aligned_cols=155 Identities=16% Similarity=0.155 Sum_probs=99.0
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~~~~~ 728 (1021)
.+..+++|..++|||||+++|++..... ......|.+ .....+..++. .+.+|||||+++|.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~--------------~~~~t~~~~--~~~~~i~~~g~~~~~~i~Dt~g~~~~~ 68 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL--------------ESKSTIGVE--FATRSIQVDGKTIKAQIWDTAGQERYR 68 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----------------CCCSCE--EEEEEEEETTEEEEEEEEECSSGGGTT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCCCcccee--EEEEEEEECCEEEEEEEEECCCchhhh
Confidence 3578999999999999999999743111 111222333 33333444554 56789999999987
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..++..+|++++|+|+++....+ ...++..+.. .+.| +++++||+|+.+...... .+...++...+
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~~~---~~a~~l~~~~~--- 141 (199)
T 2f9l_A 69 RITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVPT---DEARAFAEKNN--- 141 (199)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCH---HHHHHHHHHTT---
T ss_pred hhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccCcCH---HHHHHHHHHcC---
Confidence 77777788999999999998743322 2233333333 2455 899999999875221111 12333443333
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+.++.+||+++. +++++++.|.+.
T Consensus 142 --~~~~d~Sal~~~-----------~i~~l~~~l~~~ 165 (199)
T 2f9l_A 142 --LSFIETSALDST-----------NVEEAFKNILTE 165 (199)
T ss_dssp --CEEEECCTTTCT-----------THHHHHHHHHHH
T ss_pred --CeEEEEeCCCCC-----------CHHHHHHHHHHH
Confidence 578889999773 677777766543
No 354
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.26 E-value=2.2e-11 Score=148.58 Aligned_cols=128 Identities=21% Similarity=0.255 Sum_probs=78.5
Q ss_pred eEEEEEecCChhh---hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHH-HHHHcCCCeEEEEEeeccccchh----h-
Q psy5021 714 KHYAHVDCPGHAD---YIKNMITGAAQMDGAILVCSAVDGPMPQTREHIL-LARQVGVPNIVVFLNKADCVQDK----E- 784 (1021)
Q Consensus 714 ~~i~liDtpG~~~---~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~-~~~~~~ip~iIvviNK~Dl~~~~----~- 784 (1021)
..++||||||+.+ ....+..++..+|++|+|+|++++......+.|. .+...+.| +++|+||+|+.... +
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~~~~~~~ee 252 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQVRESLIDPDD 252 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGGCSSTTC
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECcccccccccChhh
Confidence 4689999999766 4556677889999999999999887777766664 44556778 99999999987532 1
Q ss_pred --HHHHHHHHHH----Hhhhcc----ccCCCceEEEEecccccccC---CCCCccCcchHHHHHHhhhccC
Q psy5021 785 --LLDLVEMEIR----ELLTEY----DFDGENTKIVIGSALLALEG---KDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 785 --~~~~~~~~~~----~~l~~~----~~~~~~~~ii~iSa~~~~~~---~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..+.....+. ..+... ++.....+++++||+.+... .+.......|++.|++.|.+.+
T Consensus 253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 1222222222 222211 11122346899999933211 0000112246777777765533
No 355
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.25 E-value=3.3e-11 Score=131.33 Aligned_cols=112 Identities=11% Similarity=0.146 Sum_probs=76.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCCC
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVD 89 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~ 89 (1021)
+|.++|..|+|||||+.++... .... ....-+.|+......+ + ....+++|||||+.+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~--~~~~---------------~~~~~~~Tig~~~~~v--~---~~v~LqIWDTAGQEr 58 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHN--MQPL---------------DTLYLESTSNPSLEHF--S---TLIDLAVMELPGQLN 58 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSC--CCSG---------------GGTTCCCCCSCCCEEE--C---SSSCEEEEECCSCSS
T ss_pred CEEEECCCCCCHHHHHHHHHcC--CCCC---------------ccceecCeeeeeeEEE--c---cEEEEEEEECCCchh
Confidence 3789999999999999876421 1000 0011234554443332 2 257899999999999
Q ss_pred cHH---HHHHHhhccCeEEEEEeCCCCCchhHHHHHHH----Hh--hcCCCEEEEEeCcCCCCC
Q psy5021 90 FTI---EVERSLRVLDGAVIIICASSGIQPQTETVWFQ----SQ--KYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 90 f~~---~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~----~~--~~~~p~iiviNK~D~~~~ 144 (1021)
|.. .+..+++.++++|+|+|+++. .......|+. +. ..++|+++|+||+|+...
T Consensus 59 f~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 59 YFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp SCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred ccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 964 467889999999999999987 3344444432 21 247999999999999644
No 356
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.25 E-value=3e-12 Score=145.55 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=46.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEee------------------
Q psy5021 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWE------------------ 71 (1021)
Q Consensus 10 ni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~------------------ 71 (1021)
+|+|+|++|+|||||+++|+... .... ...+.|+........+.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~-----------------~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~ 63 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIA-----------------NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYE 63 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-Cccc-----------------CCCCcccCCceEEEeeccCCchHHhhhhccccccc
Confidence 69999999999999999997433 1110 11223333332221111
Q ss_pred --cccCceeEEEEcCCCCCCcHH-------HHHHHhhccCeEEEEEeCCCC
Q psy5021 72 --VNKFKYMINIIDTPGHVDFTI-------EVERSLRVLDGAVIIICASSG 113 (1021)
Q Consensus 72 --~~~~~~~i~liDtPG~~~f~~-------~~~~~l~~~D~~ilvvda~~g 113 (1021)
.+.....++||||||+.++.. ....+++.+|++++|+|++++
T Consensus 64 ~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 64 YRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred ccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 001136799999999875422 122456899999999999875
No 357
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.25 E-value=1.2e-11 Score=126.62 Aligned_cols=157 Identities=19% Similarity=0.170 Sum_probs=93.4
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCChhh-h
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGHAD-Y 727 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~~~-~ 727 (1021)
.+.+.++|.+++|||||+++|++...... ... ...|.+.. ...+..++. .+.+|||+|... +
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~------------~~~-~~~~~~~~--~~~~~~~~~~~~l~~~Dt~~~~~~~ 70 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMD------------SDX-EVLGEDTY--ERTLMVDGESATIILLDMWENKGEN 70 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC-----------------GGGCTTEE--EEEEEETTEEEEEEEECCCCC----
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcC------------ccc-cccceeEE--EEEEEECCeEEEEEEEEeccCcchh
Confidence 35678899999999999999986321110 000 11233322 223344454 457899999765 2
Q ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc----CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcccc
Q psy5021 728 IKNMITGAAQMDGAILVCSAVDGPMPQ-TREHILLARQV----GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDF 802 (1021)
Q Consensus 728 ~~~~~~~~~~aD~ailVvDa~~g~~~q-t~e~l~~~~~~----~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 802 (1021)
......+++.+|++++|+|.++....+ ..+++..+... ++| +|+|.||+|+...... . ..+...+....+
T Consensus 71 ~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~r~v-~--~~~~~~~a~~~~- 145 (192)
T 2cjw_A 71 EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRXREV-S--VSEGRAXAVVFD- 145 (192)
T ss_dssp CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECTTCGGGCCS-C--HHHHHHHHHHTT-
T ss_pred hhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCe-EEEEEechhhhccccc-c--HHHHHHHHHHhC-
Confidence 222344567899999999998743322 23333333332 677 9999999998652211 1 011122222222
Q ss_pred CCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 803 DGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 803 ~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
++++++||++|. |++++++.|.+.+
T Consensus 146 ----~~~~e~SA~~g~-----------~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 146 ----XKFIETSAAVQH-----------NVKELFEGIVRQV 170 (192)
T ss_dssp ----CEEEECBTTTTB-----------SHHHHHHHHHHHH
T ss_pred ----CceEEeccccCC-----------CHHHHHHHHHHHH
Confidence 578999999873 8888888886643
No 358
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.24 E-value=1.9e-11 Score=145.01 Aligned_cols=138 Identities=15% Similarity=0.108 Sum_probs=88.8
Q ss_pred CCCCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCccc------ccC-----------hHHHhhhCce-----e
Q psy5021 4 KVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTI------TDW-----------MQQEQERGIT-----I 61 (1021)
Q Consensus 4 ~~~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~------~d~-----------~~~e~~rgiT-----i 61 (1021)
+.+...+|+|+|+.|+|||||+|+|+.........+. ..+++. .+. .+.+.-+++. .
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~-~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGP-EPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF 139 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCS-SCCCCSEEEEECCSSSEEECCC------------------CC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCC-CCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence 3456789999999999999999999865432101110 001000 000 0000000000 0
Q ss_pred eeeeeEEEeecccCceeEEEEcCCCCCC-----------cHHHHHHHhhccCeEEEEEeCCC-CCchhHHHHHHHHhhcC
Q psy5021 62 TSASVSIFWEVNKFKYMINIIDTPGHVD-----------FTIEVERSLRVLDGAVIIICASS-GIQPQTETVWFQSQKYK 129 (1021)
Q Consensus 62 ~~~~~~~~~~~~~~~~~i~liDtPG~~~-----------f~~~~~~~l~~~D~~ilvvda~~-g~~~~t~~~~~~~~~~~ 129 (1021)
......+.+.. ..-..++||||||+.+ |...+..++..+|++|+|+|++. +...+...+++.+...+
T Consensus 140 ~~~~~~~~~~~-~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~ 218 (550)
T 2qpt_A 140 LNRFMCAQLPN-QVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHE 218 (550)
T ss_dssp CTTEEEEECCC-HHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCG
T ss_pred cccceEEeccc-cccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcC
Confidence 01111122220 0004699999999976 77888889999999999999988 57888888888888888
Q ss_pred CCEEEEEeCcCCCC
Q psy5021 130 VPKMIFVNKMDRIG 143 (1021)
Q Consensus 130 ~p~iiviNK~D~~~ 143 (1021)
.|+++|+||+|+..
T Consensus 219 ~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 219 DKIRVVLNKADMVE 232 (550)
T ss_dssp GGEEEEEECGGGSC
T ss_pred CCEEEEEECCCccC
Confidence 99999999999974
No 359
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.22 E-value=1.3e-11 Score=139.24 Aligned_cols=134 Identities=15% Similarity=0.162 Sum_probs=81.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc--CC-------------------cccccCh--HHHh------h-
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH--HG-------------------TTITDWM--QQEQ------E- 56 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~--~~-------------------~~~~d~~--~~e~------~- 56 (1021)
....|+++|.+++|||||+|+|+...-.-...|-+. ++ ..++++. +.+. -
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 356899999999999999999975432111000000 00 0112221 1111 1
Q ss_pred ---hCceeeeeeeEEEeecccCceeEEEEcCCCCCC-------------cHHHHHHHhhccC-eEEEEEeCCCCCchhHH
Q psy5021 57 ---RGITITSASVSIFWEVNKFKYMINIIDTPGHVD-------------FTIEVERSLRVLD-GAVIIICASSGIQPQTE 119 (1021)
Q Consensus 57 ---rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~-------------f~~~~~~~l~~~D-~~ilvvda~~g~~~~t~ 119 (1021)
.|+......+.+... ....++||||||..+ +...+..+++.++ .+++|+|+..+...+..
T Consensus 110 g~~~gi~~~~~~~~i~~~---~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~ 186 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSP---HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 186 (353)
T ss_dssp TTTTCCCCCCEEEEEEET---TCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH
T ss_pred ccCCCcccCceEEEEecC---CCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH
Confidence 344333322333222 146899999999743 3445566665554 55667888877766655
Q ss_pred -HHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 120 -TVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 120 -~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
.+++.+...+.|+++|+||+|+..
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~ 211 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMD 211 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSC
T ss_pred HHHHHHhCcCCCceEEEeccccccC
Confidence 377777778999999999999864
No 360
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.21 E-value=1.9e-11 Score=131.89 Aligned_cols=118 Identities=14% Similarity=0.025 Sum_probs=81.4
Q ss_pred cccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI 728 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~ 728 (1021)
.+.+.++++|++++|||||+|+|++..... .....+.|.......+..++..++||||||+.+|.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVR---------------VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG 98 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSC---------------CCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcc---------------cCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcc
Confidence 356788999999999999999999843211 11234556666677778889999999999997763
Q ss_pred H-------HHHHHh--hhCCEEEEEEECCCC-CcHHHHHHHHHHHHc-C---CCeEEEEEeeccccc
Q psy5021 729 K-------NMITGA--AQMDGAILVCSAVDG-PMPQTREHILLARQV-G---VPNIVVFLNKADCVQ 781 (1021)
Q Consensus 729 ~-------~~~~~~--~~aD~ailVvDa~~g-~~~qt~e~l~~~~~~-~---ip~iIvviNK~Dl~~ 781 (1021)
. .....+ ..+|++++|+|.+.. ......+.+..+... + ..++++|+||+|+..
T Consensus 99 ~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 99 YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 2 222222 278999999987753 333445566555543 3 123899999999863
No 361
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.20 E-value=6.4e-12 Score=134.90 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=29.7
Q ss_pred ccCeEEEEEeCCCC--CchhHHHHH-HHH----hhcCCCEEEEEeCcCCC
Q psy5021 100 VLDGAVIIICASSG--IQPQTETVW-FQS----QKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 100 ~~D~~ilvvda~~g--~~~~t~~~~-~~~----~~~~~p~iiviNK~D~~ 142 (1021)
.+|++|+|+|+++. ........| ..+ ...++|+++|+||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc
Confidence 69999999999885 333332222 222 23579999999999984
No 362
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.20 E-value=1.6e-11 Score=138.21 Aligned_cols=170 Identities=25% Similarity=0.213 Sum_probs=86.4
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCe--EEEEEecCCh----
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK--HYAHVDCPGH---- 724 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~--~i~liDtpG~---- 724 (1021)
.++++++|.+++|||||+++|++........ ......+...+++++.....+...+. .+++|||||+
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~-------~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~ 109 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERV-------IPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAI 109 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC----------------------CEEEEEEEEC----CEEEEEEEEC--------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCc-------ccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccC
Confidence 4677999999999999999987642211110 01111122234444443333444443 6899999999
Q ss_pred ---hhhHHHHH-------HHhhh-------------CCEEEEEEEC-CCCCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Q psy5021 725 ---ADYIKNMI-------TGAAQ-------------MDGAILVCSA-VDGPMPQTREHILLARQVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 725 ---~~~~~~~~-------~~~~~-------------aD~ailVvDa-~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~ 780 (1021)
+.|...+. .+++. +|+++++|+. .++......+.+..+ ..++| +|+|+||+|+.
T Consensus 110 ~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~p-iIlV~NK~Dl~ 187 (361)
T 2qag_A 110 NCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVN-IVPVIAKADTL 187 (361)
T ss_dssp ------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SC-EEEEEECCSSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCC-EEEEEECCCCC
Confidence 44422222 33332 2578888876 445555554554443 25677 99999999998
Q ss_pred chhhHHHHHHHHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 781 QDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 781 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
...+ ....+.++.++++..+ ++++++||+++.+ ...+..+++.|.+.+|
T Consensus 188 ~~~e-v~~~k~~i~~~~~~~~-----i~~~~~Sa~~~~~--------~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 188 TLKE-RERLKKRILDEIEEHN-----IKIYHLPDAESDE--------DEDFKEQTRLLKASIP 236 (361)
T ss_dssp CHHH-HHHHHHHHHHHTTCC------CCSCCCC-----------------CHHHHHHHHHTCS
T ss_pred CHHH-HHHHHHHHHHHHHHCC-----CCEEeCCCcCCCc--------chhHHHHHHHHHhcCC
Confidence 6332 3334456666666554 4689999998742 1245567777766554
No 363
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.20 E-value=4.8e-11 Score=129.29 Aligned_cols=116 Identities=13% Similarity=-0.015 Sum_probs=80.4
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhH-
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYI- 728 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~- 728 (1021)
+.+++.++|.+++|||||+|+|++..... .....+.|.+.....++..+..++||||||+.++.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~ 102 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVS---------------ISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGY 102 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSC---------------CCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTE
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccc---------------ccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCcc
Confidence 35678899999999999999999754211 11123455555566677788899999999986652
Q ss_pred ------HHHHHHh--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCeEEEEEeeccccc
Q psy5021 729 ------KNMITGA--AQMDGAILVCSAVD-GPMPQTREHILLARQV-G----VPNIVVFLNKADCVQ 781 (1021)
Q Consensus 729 ------~~~~~~~--~~aD~ailVvDa~~-g~~~qt~e~l~~~~~~-~----ip~iIvviNK~Dl~~ 781 (1021)
..+..++ ..+|++|+|+|++. .......+++..+... + .| +|+|+||+|+.+
T Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~-iivV~nK~Dl~~ 168 (270)
T 1h65_A 103 INDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK-AIVALTHAQFSP 168 (270)
T ss_dssp ECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGG-EEEEEECCSCCC
T ss_pred chHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccC-EEEEEECcccCC
Confidence 2222222 36899999998865 3334455666655443 4 35 999999999875
No 364
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.20 E-value=1.8e-11 Score=139.17 Aligned_cols=82 Identities=22% Similarity=0.135 Sum_probs=45.1
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEE--Ee-------------------e
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVE--YE-------------------S 711 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~--~~-------------------~ 711 (1021)
.+|++|.+|+|||||+|+|++......+. .+.|++..... +. .
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~----------------p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~ 65 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANY----------------PFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYR 65 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCC----------------CCcccCCceEEEeeccCCchHHhhhhccccccccc
Confidence 57899999999999999999854211111 12232222211 10 1
Q ss_pred C---CeEEEEEecCChhhhH-------HHHHHHhhhCCEEEEEEECCCC
Q psy5021 712 E---NKHYAHVDCPGHADYI-------KNMITGAAQMDGAILVCSAVDG 750 (1021)
Q Consensus 712 ~---~~~i~liDtpG~~~~~-------~~~~~~~~~aD~ailVvDa~~g 750 (1021)
+ ...+.||||||+.+.. ...+.+++.+|++++|+|++++
T Consensus 66 ~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 66 NGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp TTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 1 2468999999986531 1122345889999999999875
No 365
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.17 E-value=4.4e-11 Score=144.22 Aligned_cols=134 Identities=15% Similarity=0.199 Sum_probs=84.9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc---------------------cCCcccccChHH--H------h--
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV---------------------HHGTTITDWMQQ--E------Q-- 55 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~---------------------~~~~~~~d~~~~--e------~-- 55 (1021)
....|+++|+.++|||||+|+|+...-.....|-. ..+..+.|+.+. + .
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 45789999999999999999998533210000000 001111222110 0 1
Q ss_pred --hhCceeeeeeeEEEeecccCceeEEEEcCCCCCC-------------cHHHHHHHh-hccCeEEEEEeCCCCCchhHH
Q psy5021 56 --ERGITITSASVSIFWEVNKFKYMINIIDTPGHVD-------------FTIEVERSL-RVLDGAVIIICASSGIQPQTE 119 (1021)
Q Consensus 56 --~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~-------------f~~~~~~~l-~~~D~~ilvvda~~g~~~~t~ 119 (1021)
..|++-......+.+. ....+.|+||||... +...+..++ ..+|.+++|+|++.+...+..
T Consensus 130 g~~~~is~~~i~l~I~~P---~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~ 206 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSP---HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 206 (772)
T ss_dssp CSTTCCCSCCEEEEEEET---TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH
T ss_pred CCCCcccccceEEEEecC---CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH
Confidence 1233332222333333 145799999999754 223344444 478999999999998877776
Q ss_pred -HHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 120 -TVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 120 -~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
.+++.+...+.|+++|+||+|+..
T Consensus 207 l~ll~~L~~~g~pvIlVlNKiDlv~ 231 (772)
T 3zvr_A 207 LKIAKEVDPQGQRTIGVITKLDLMD 231 (772)
T ss_dssp HHHHHHHCTTCSSEEEEEECTTSSC
T ss_pred HHHHHHHHhcCCCEEEEEeCcccCC
Confidence 788888888999999999999864
No 366
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.16 E-value=8.8e-11 Score=133.58 Aligned_cols=115 Identities=16% Similarity=0.226 Sum_probs=72.5
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
...|+|+|++|||||||+++|..... . + .++ ...|+.+....+.+.. ...++++||||+
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~---~---i------~~~------~ftTl~p~~G~V~~~~---~~~~~l~DtpGl 215 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHP---K---I------APY------PFTTLSPNLGVVEVSE---EERFTLADIPGI 215 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCC---E---E------CCC------TTCSSCCEEEEEECSS---SCEEEEEECCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCc---c---c------cCc------ccceecceeeEEEecC---cceEEEEecccc
Confidence 34589999999999999999953211 1 1 111 1223444444445541 267999999998
Q ss_pred CC-------cHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh-----cCCCEEEEEeCcCCCC
Q psy5021 88 VD-------FTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK-----YKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~-------f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~-----~~~p~iiviNK~D~~~ 143 (1021)
.+ +.....+.+..+|.++.++|++.....+....++++.. .+.|.++++||+|+..
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 54 23344556677999999999972122222222333322 3689999999999863
No 367
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.15 E-value=7.6e-11 Score=120.61 Aligned_cols=154 Identities=17% Similarity=0.139 Sum_probs=99.7
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeE--EEEEecCChhhhH
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKH--YAHVDCPGHADYI 728 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~--i~liDtpG~~~~~ 728 (1021)
.+..+++|.+++|||||+++|++..... ... ..++.+.....+..++.. +.+|||||+++|.
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~--------------~~~--~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~ 92 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNL--------------ESK--STIGVEFATRSIQVDGKTIKAQIWDTAGLERYR 92 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCC--------------SCC--CCCSEEEEEEEEEETTEEEEEEEEEECSCCSSS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC--------------CCC--CccceEEEEEEEEECCEEEEEEEEECCCCcchh
Confidence 4678999999999999999999743111 111 122333333445555554 4579999999988
Q ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCC
Q psy5021 729 KNMITGAAQMDGAILVCSAVDGPMP-QTREHILLARQ---VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDG 804 (1021)
Q Consensus 729 ~~~~~~~~~aD~ailVvDa~~g~~~-qt~e~l~~~~~---~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 804 (1021)
..+..++..+|++++|+|.++.... ....++..+.. .+.| +++++||+|+.+...... .+...++...+
T Consensus 93 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~~~---~~a~~l~~~~~--- 165 (191)
T 1oix_A 93 AITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVPT---DEARAFAEKNG--- 165 (191)
T ss_dssp CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSCH---HHHHHHHHHTT---
T ss_pred hhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccCH---HHHHHHHHHcC---
Confidence 7777788899999999998864322 22223333333 2455 899999999865221111 12233333332
Q ss_pred CceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 805 ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 805 ~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
+.++.+||+++ .+++++++.|.+
T Consensus 166 --~~~ld~Sald~-----------~~v~~l~~~l~~ 188 (191)
T 1oix_A 166 --LSFIETSALDS-----------TNVEAAFQTILT 188 (191)
T ss_dssp --CEEEECCTTTC-----------TTHHHHHHHHHH
T ss_pred --CEEEEEeCCCC-----------CCHHHHHHHHHH
Confidence 57888999977 378888888764
No 368
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.14 E-value=1.5e-11 Score=125.82 Aligned_cols=111 Identities=21% Similarity=0.227 Sum_probs=71.4
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhhhHH
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHADYIK 729 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~ 729 (1021)
+...+.++|.+++|||||+++|++..... .......+++.+ ..+..+.+|||||+.+|..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~-------------~~~~~~~~~~~~-------~~~~~~~l~Dt~G~~~~~~ 106 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP-------------TVVSQEPLSAAD-------YDGSGVTLVDFPGHVKLRY 106 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------------C-------CCCTTCSEEEETTCCBSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCc-------------ccccCCCceeee-------ecCCeEEEEECCCCchHHH
Confidence 34678899999999999999999743111 000011122221 2456789999999998866
Q ss_pred HHHHHhhh----CCEEEEEEECC-CCC-cHHHHHHHHHHHH-------cCCCeEEEEEeeccccc
Q psy5021 730 NMITGAAQ----MDGAILVCSAV-DGP-MPQTREHILLARQ-------VGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 730 ~~~~~~~~----aD~ailVvDa~-~g~-~~qt~e~l~~~~~-------~~ip~iIvviNK~Dl~~ 781 (1021)
.+..++.. +|++|+|+|++ +.. +....+++..+.. .++| +++|+||+|+.+
T Consensus 107 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 170 (193)
T 2ged_A 107 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSELFT 170 (193)
T ss_dssp CHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTSTT
T ss_pred HHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCC-EEEEEEchHhcC
Confidence 66666655 89999999998 321 1222233322221 2778 999999999976
No 369
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.12 E-value=1.6e-11 Score=131.74 Aligned_cols=84 Identities=19% Similarity=0.198 Sum_probs=56.0
Q ss_pred hCCEEEEEEECCCC---CcHHHHHHHHHHHH----cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEE
Q psy5021 737 QMDGAILVCSAVDG---PMPQTREHILLARQ----VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809 (1021)
Q Consensus 737 ~aD~ailVvDa~~g---~~~qt~e~l~~~~~----~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 809 (1021)
+||++|+|+|+++. .+.....++..+.. .++| +|+|+||+|+.+... . ++...+.+... .+++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~~~-v----~~~~~~~~~~~----~~~~ 231 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGVERY-I----RDAHTFALSKK----NLQV 231 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCC-EEEEEECGGGBCHHH-H----HHHHHHHHTSS----SCCE
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCC-EEEEEEcccccccHH-H----HHHHHHHHhcC----CCeE
Confidence 69999999999885 33333444444332 3677 999999999975321 1 23444443321 2578
Q ss_pred EEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 810 VIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 810 i~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++||++|. |+++++++|.+.
T Consensus 232 ~e~SAk~g~-----------gv~elf~~l~~~ 252 (255)
T 3c5h_A 232 VETSARSNV-----------NVDLAFSTLVQL 252 (255)
T ss_dssp EECBTTTTB-----------SHHHHHHHHHHH
T ss_pred EEEECCCCC-----------CHHHHHHHHHHH
Confidence 999999873 889999888653
No 370
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.07 E-value=1.8e-10 Score=129.66 Aligned_cols=165 Identities=14% Similarity=0.053 Sum_probs=92.1
Q ss_pred ccccceeeeeeeeeccchhhhhhhcccccccc-ccc----ccccc----------c--------cCCc--hhh------h
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEIY-GGE----VRAFD----------T--------IDNA--PEE------K 696 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~-~~~----~~~~~----------~--------~d~~--~~e------~ 696 (1021)
.+....++++|.+++|||||+|+|++...... .+. +.... + .+.. ..+ +
T Consensus 28 ~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~ 107 (353)
T 2x2e_A 28 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 107 (353)
T ss_dssp GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence 45567889999999999999999998543210 000 00000 0 0100 000 1
Q ss_pred h----cCceEeeeEEEEeeC-CeEEEEEecCChh-------------hhHHHHHHHhhhC-CEEEEEEECCCCCcHHHH-
Q psy5021 697 E----RGITISTSHVEYESE-NKHYAHVDCPGHA-------------DYIKNMITGAAQM-DGAILVCSAVDGPMPQTR- 756 (1021)
Q Consensus 697 ~----~G~Ti~~~~~~~~~~-~~~i~liDtpG~~-------------~~~~~~~~~~~~a-D~ailVvDa~~g~~~qt~- 756 (1021)
. .|+........+... ...++||||||.. .+...+..++..+ +++++|+|++.+...+..
T Consensus 108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~ 187 (353)
T 2x2e_A 108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187 (353)
T ss_dssp HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence 1 344333333333333 4789999999953 3445566666655 456667788776655544
Q ss_pred HHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccc
Q psy5021 757 EHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLAL 818 (1021)
Q Consensus 757 e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~ 818 (1021)
+.+..+...+.| +|+|+||+|+.+...... ..+.... ..+.....+++++||+++.
T Consensus 188 ~i~~~~~~~~~~-~i~V~NK~Dl~~~~~~~~---~~~~~~~--~~l~~~~~~v~~~SA~~~~ 243 (353)
T 2x2e_A 188 KVAKEVDPQGQR-TIGVITKLDLMDEGTDAR---DVLENKL--LPLRRGYIGVVNRSQKDID 243 (353)
T ss_dssp HHHHHHCTTCTT-EEEEEECGGGSCTTCCCH---HHHTTCS--SCCTTCEEECCCCCHHHHH
T ss_pred HHHHHhCcCCCc-eEEEeccccccCcchhHH---HHHhCCc--ccccCCceEEEeCCccccc
Confidence 245555556788 899999999986322111 1111111 1111112467889999874
No 371
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.06 E-value=5.3e-10 Score=127.15 Aligned_cols=154 Identities=21% Similarity=0.270 Sum_probs=95.7
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC-eEEEEEecCChhh----
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN-KHYAHVDCPGHAD---- 726 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-~~i~liDtpG~~~---- 726 (1021)
..+|++|++++|||||+++|++....+...++ .|.......+..++ ..++++|+||+..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~f----------------tTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~ 221 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPF----------------TTLSPNLGVVEVSEEERFTLADIPGIIEGASE 221 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTT----------------CSSCCEEEEEECSSSCEEEEEECCCCCCCGGG
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCccc----------------ceecceeeEEEecCcceEEEEeccccccchhh
Confidence 35789999999999999999986433222211 12233333344444 7899999999743
Q ss_pred ---hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHH----HHHHHH-cCCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 727 ---YIKNMITGAAQMDGAILVCSAVDGPMPQTREH----ILLARQ-VGVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 727 ---~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~----l~~~~~-~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
+.......+..+|.+++|+|+++....+.... ..++.. ...| .|+++||+|+... ... .++.+.++
T Consensus 222 ~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P-~ILVlNKlDl~~~-~~~----~~l~~~l~ 295 (416)
T 1udx_A 222 GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRP-SLVALNKVDLLEE-EAV----KALADALA 295 (416)
T ss_dssp SCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSC-EEEEEECCTTSCH-HHH----HHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCC-EEEEEECCChhhH-HHH----HHHHHHHH
Confidence 12233444677999999999972222222212 222221 3567 6777899998763 222 33334443
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
..+ .+++++||+++ +++++|++.|.+.+.
T Consensus 296 ~~g-----~~vi~iSA~~g-----------~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 296 REG-----LAVLPVSALTG-----------AGLPALKEALHALVR 324 (416)
T ss_dssp TTT-----SCEEECCTTTC-----------TTHHHHHHHHHHHHH
T ss_pred hcC-----CeEEEEECCCc-----------cCHHHHHHHHHHHHH
Confidence 333 46899999987 388888888876553
No 372
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.05 E-value=2.9e-10 Score=134.76 Aligned_cols=131 Identities=21% Similarity=0.155 Sum_probs=84.7
Q ss_pred cceeeeeeeeeccchhhhhhhcccccc---ccccccccc--cccCCchhhhhcCceEe------------------eeEE
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSE---IYGGEVRAF--DTIDNAPEEKERGITIS------------------TSHV 707 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~---~~~~~~~~~--~~~d~~~~e~~~G~Ti~------------------~~~~ 707 (1021)
...+.++|.+++|||||+|+|++.... ....+.... ........+...|.+.. ....
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 467899999999999999999986532 111111000 00000000000111100 0001
Q ss_pred EEeeCC---eEEEEEecCChhh-----------hHHHHHHHhhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEE
Q psy5021 708 EYESEN---KHYAHVDCPGHAD-----------YIKNMITGAAQMDGAILVCSAVD-GPMPQTREHILLARQVGVPNIVV 772 (1021)
Q Consensus 708 ~~~~~~---~~i~liDtpG~~~-----------~~~~~~~~~~~aD~ailVvDa~~-g~~~qt~e~l~~~~~~~ip~iIv 772 (1021)
.+...+ ..+.||||||+.+ |...+..++..+|++|+|+|+++ +...+..+++..+...+.| +++
T Consensus 145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p-vil 223 (550)
T 2qpt_A 145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK-IRV 223 (550)
T ss_dssp EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG-EEE
T ss_pred EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC-EEE
Confidence 122222 4689999999875 66777888899999999999988 5677888888877777778 899
Q ss_pred EEeeccccch
Q psy5021 773 FLNKADCVQD 782 (1021)
Q Consensus 773 viNK~Dl~~~ 782 (1021)
|+||+|+...
T Consensus 224 VlNK~Dl~~~ 233 (550)
T 2qpt_A 224 VLNKADMVET 233 (550)
T ss_dssp EEECGGGSCH
T ss_pred EEECCCccCH
Confidence 9999999863
No 373
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.04 E-value=8.2e-10 Score=124.81 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=85.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc------------------------CCcccccChHHHh------h
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH------------------------HGTTITDWMQQEQ------E 56 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~------------------------~~~~~~d~~~~e~------~ 56 (1021)
.+..|+++|+.++|||||+++|+...-.....|.+. .+..+.|+..... .
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 467899999999999999999985321111111110 0111112211110 0
Q ss_pred ----hCceeeeeeeEEEeecccCceeEEEEcCCCCCCc-------------HHHHHHHhhccCeEEEEEeCCCC--Cchh
Q psy5021 57 ----RGITITSASVSIFWEVNKFKYMINIIDTPGHVDF-------------TIEVERSLRVLDGAVIIICASSG--IQPQ 117 (1021)
Q Consensus 57 ----rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f-------------~~~~~~~l~~~D~~ilvvda~~g--~~~~ 117 (1021)
.+..+....+.+.... .....+.||||||..++ ...+..+++.+|++|+|+|+... ....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~-~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~ 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYS-PNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEE-TTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH
T ss_pred HhcCCCCCcccceEEEEEeC-CCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH
Confidence 1222333333333321 12457999999999887 66778889999999999987532 2233
Q ss_pred HHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 118 TETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 118 t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
...+++.+...+.|+++|+||+|+...
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCT
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCC
Confidence 455566666778999999999998743
No 374
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.04 E-value=1.1e-09 Score=117.95 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=46.4
Q ss_pred ceeEEEEcCCCCCCcHHH------HHHHhhccCeEEEEEeCCCCCchhHHH-H----HHHHhhcCCCEEEEEeCcCCCC
Q psy5021 76 KYMINIIDTPGHVDFTIE------VERSLRVLDGAVIIICASSGIQPQTET-V----WFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~------~~~~l~~~D~~ilvvda~~g~~~~t~~-~----~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
++.+.||||||..++... ...++.. +.+|+++|+.......... . +......++|.++|+||+|+..
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccc
Confidence 468999999999776422 2345556 8899999997665544322 1 1223345899999999999864
No 375
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.03 E-value=1.3e-10 Score=130.89 Aligned_cols=113 Identities=18% Similarity=0.147 Sum_probs=72.6
Q ss_pred eeCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHH
Q psy5021 710 ESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLV 789 (1021)
Q Consensus 710 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~ 789 (1021)
+..+..+.||||||... .....+..+|++++|+|+..+...+... ......| .++|+||+|+.+.. ..+..
T Consensus 168 ~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p-~ivVlNK~Dl~~~~-~~~~~ 238 (355)
T 3p32_A 168 EAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK----KGVLELA-DIVVVNKADGEHHK-EARLA 238 (355)
T ss_dssp HHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGC-SEEEEECCCGGGHH-HHHHH
T ss_pred hhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcC-CEEEEECCCCcChh-HHHHH
Confidence 34578899999999543 2223358899999999987654332211 0112457 78899999997532 23334
Q ss_pred HHHHHHhhhccccCC--CceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 790 EMEIRELLTEYDFDG--ENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 790 ~~~~~~~l~~~~~~~--~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
..++...+..++... ...+++++||++| .|+++|+++|.+.+
T Consensus 239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g-----------~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 239 ARELSAAIRLIYPREALWRPPVLTMSAVEG-----------RGLAELWDTVERHR 282 (355)
T ss_dssp HHHHHHHHHHHSTTCCSCCCCEEEEBGGGT-----------BSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccCCCCceEEEEcCCC-----------CCHHHHHHHHHHHH
Confidence 455555544332111 1357999999988 38888888887654
No 376
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.03 E-value=4.5e-10 Score=125.83 Aligned_cols=60 Identities=20% Similarity=0.153 Sum_probs=38.1
Q ss_pred ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 76 KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
++.+.|+||||..+-. ......+|.+++|+|+..+...+... . .....|.++++||+|+.
T Consensus 166 ~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~--~--~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 166 GYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK--R--GIIEMADLVAVTKSDGD 225 (349)
T ss_dssp TCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred CCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH--H--HHHhcCCEEEEeeecCC
Confidence 6789999999964322 33457899999999998764322111 1 12367999999999985
No 377
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.8e-09 Score=120.78 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=83.0
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
.-.|||+|.+|+|||||+|+|......+. ...+.|+++....+.+. +..+.|+||||.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~------------------~~pftT~~~~~g~~~~~----~~~i~l~D~pGl 129 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAA------------------EYEFTTLVTVPGVIRYK----GAKIQMLDLPGI 129 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGG------------------GTCSSCCCEEEEEEEET----TEEEEEEECGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCccc------------------CCCCceeeeeeEEEEeC----CcEEEEEeCCCc
Confidence 45799999999999999999964322111 22466888887788888 899999999998
Q ss_pred CCc-------HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHh-----hcCCCEEEEEeCcCCCC
Q psy5021 88 VDF-------TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQ-----KYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 88 ~~f-------~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~-----~~~~p~iiviNK~D~~~ 143 (1021)
.+- ...+...++.+|++++|+|+++++.. ...+...+. ..+.|.++++||+|+.+
T Consensus 130 ~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 130 IDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp CCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred cCCchhhhHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 543 34567788999999999999875422 222222222 23578999999999854
No 378
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.00 E-value=3.9e-10 Score=126.15 Aligned_cols=112 Identities=15% Similarity=0.064 Sum_probs=68.4
Q ss_pred eCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHH
Q psy5021 711 SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVE 790 (1021)
Q Consensus 711 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~ 790 (1021)
+.+..+.||||||+.++... ....+|++++|+|+..+...+.... ...++| .++|+||+|+.+.. ......
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p-~ivv~NK~Dl~~~~-~~~~~~ 216 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVA-DLIVINKDDGDNHT-NVAIAR 216 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHC-SEEEECCCCTTCHH-HHHHHH
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhccc-CEEEEECCCCCChH-HHHHHH
Confidence 45788999999998765443 3588999999999976532221111 113567 67889999997632 233333
Q ss_pred HHHHHhhhccccC--CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 791 MEIRELLTEYDFD--GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 791 ~~~~~~l~~~~~~--~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.++.+.+..++.. ....+++++||++| .|++.|+++|.+.+
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g-----------~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEK-----------RGIDEIWHAIIDFK 259 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGT-----------BSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCC-----------CCHHHHHHHHHHHH
Confidence 3444444332210 01247899999987 37888888876643
No 379
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.98 E-value=2.3e-10 Score=137.99 Aligned_cols=165 Identities=13% Similarity=0.073 Sum_probs=97.1
Q ss_pred ccccceeeeeeeeeccchhhhhhhccccccc-ccccccc-------------c-cccCCc----------hh------hh
Q psy5021 648 DLRSNTKGTIGHVDHGKTTLTAALTKVSSEI-YGGEVRA-------------F-DTIDNA----------PE------EK 696 (1021)
Q Consensus 648 ~l~~~t~g~~g~~~~GKSTLi~~L~~~~~~~-~~~~~~~-------------~-~~~d~~----------~~------e~ 696 (1021)
.+....++++|.+++|||||+|+|++..... +.+.... + .++... .. ..
T Consensus 48 ~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 48 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp GGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 3445678999999999999999999854311 1111000 0 000000 00 01
Q ss_pred ----hcCceEeeeEEEEeeC-CeEEEEEecCChhh-------------hHHHHHHHh-hhCCEEEEEEECCCCCcHHHH-
Q psy5021 697 ----ERGITISTSHVEYESE-NKHYAHVDCPGHAD-------------YIKNMITGA-AQMDGAILVCSAVDGPMPQTR- 756 (1021)
Q Consensus 697 ----~~G~Ti~~~~~~~~~~-~~~i~liDtpG~~~-------------~~~~~~~~~-~~aD~ailVvDa~~g~~~qt~- 756 (1021)
..|++-+.....+... ...++|+||||..+ +...+..++ ..+|++++|+||+.+...+..
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 1233334444444443 35799999999432 333444555 468999999999988776665
Q ss_pred HHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccc
Q psy5021 757 EHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLAL 818 (1021)
Q Consensus 757 e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~ 818 (1021)
..+..+...+.| +|+|+||+|+.+...... .+.. -+.+.+.....+++++||++|.
T Consensus 208 ~ll~~L~~~g~p-vIlVlNKiDlv~~~~~~~----~il~-~~~~~l~lg~~~VV~iSA~~G~ 263 (772)
T 3zvr_A 208 KIAKEVDPQGQR-TIGVITKLDLMDEGTDAR----DVLE-NKLLPLRRGYIGVVNRSQKDID 263 (772)
T ss_dssp HHHHHHCTTCSS-EEEEEECTTSSCTTCCSH----HHHT-TCSSCCSSCEEECCCCCCEESS
T ss_pred HHHHHHHhcCCC-EEEEEeCcccCCcchhhH----HHHH-HHhhhhhccCCceEEecccccc
Confidence 566777777888 899999999986332111 1111 0111111122578999999874
No 380
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.95 E-value=5.7e-10 Score=124.75 Aligned_cols=111 Identities=20% Similarity=0.127 Sum_probs=81.1
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh-----
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD----- 726 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~----- 726 (1021)
.++|++|++|+|||||+|+|++....+.+. .+.|++.....+.+.+..+.|+||||..+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~----------------pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~ 136 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEY----------------EFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDG 136 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGT----------------CSSCCCEEEEEEEETTEEEEEEECGGGCCC----
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCC----------------CCceeeeeeEEEEeCCcEEEEEeCCCccCCchhh
Confidence 589999999999999999999865443332 35688888888889999999999999632
Q ss_pred --hHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEeecccc
Q psy5021 727 --YIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQV-----GVPNIVVFLNKADCV 780 (1021)
Q Consensus 727 --~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~-----~ip~iIvviNK~Dl~ 780 (1021)
....++..++.||++++|+|++++.. +.......+... ..| .++++||+|..
T Consensus 137 ~~~g~~~l~~i~~ad~il~vvD~~~p~~-~~~~i~~EL~~~~~~l~~k~-~~i~~nK~d~~ 195 (376)
T 4a9a_A 137 RGRGKQVIAVARTCNLLFIILDVNKPLH-HKQIIEKELEGVGIRLNKTP-PDILIKKKEKG 195 (376)
T ss_dssp -CHHHHHHHHHHHCSEEEEEEETTSHHH-HHHHHHHHHHHTTEEETCCC-CCEEEEECSSS
T ss_pred hHHHHHHHHHHHhcCccccccccCccHH-HHHHHHHHHHHhhHhhccCC-hhhhhhHhhhh
Confidence 34556777899999999999987432 111111223332 345 56788999963
No 381
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=98.94 E-value=7.1e-09 Score=92.59 Aligned_cols=81 Identities=25% Similarity=0.391 Sum_probs=69.2
Q ss_pred CCCeeEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCCeeEEEEEEEEecccccceeccCceEEEEecccCccCc
Q psy5021 850 DKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEV 929 (1021)
Q Consensus 850 ~~p~~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i 929 (1021)
-.|..|.|..++..-. |+++.|+|++|.|++|+.| |.+. ..++|+||+++++++++|.+||+|+++++++.. ++
T Consensus 32 ~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~-~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~I 105 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPS-GIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-KV 105 (116)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSS-CEEEEEEEEETTEEESEEETTCEEEEEEESCCC-CC
T ss_pred cCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCc-eEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-cc
Confidence 3577787777444334 8999999999999999999 7552 358899999999999999999999999999877 99
Q ss_pred ccceEEe
Q psy5021 930 ERGQVLA 936 (1021)
Q Consensus 930 ~~G~vl~ 936 (1021)
++||||-
T Consensus 106 ~~GdVLy 112 (116)
T 1xe1_A 106 KKGDVLE 112 (116)
T ss_dssp CTTCEEE
T ss_pred CCCcEEE
Confidence 9999995
No 382
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.93 E-value=4.7e-10 Score=130.29 Aligned_cols=146 Identities=19% Similarity=0.138 Sum_probs=82.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCC-cccccc--cC-CcccccCh-HHHhhhCceeeeeee-------------E
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSS-HKIGEV--HH-GTTITDWM-QQEQERGITITSASV-------------S 67 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~-~~~g~~--~~-~~~~~d~~-~~e~~rgiTi~~~~~-------------~ 67 (1021)
.+.++|+++|++|+|||||+++|.+..... .+..-+ |. +....++. ......++++..... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 457899999999999999999998543110 011111 11 11111221 112334555433110 0
Q ss_pred EEeecccCceeEEEEcCCCCCC----cHHHHHHHh--hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCE-EEEEeCcC
Q psy5021 68 IFWEVNKFKYMINIIDTPGHVD----FTIEVERSL--RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPK-MIFVNKMD 140 (1021)
Q Consensus 68 ~~~~~~~~~~~i~liDtPG~~~----f~~~~~~~l--~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~-iiviNK~D 140 (1021)
+.| .++.+.||||||... +..+..... ..+|.+++|+|+..|.. ....++.... .+|+ .+|+||+|
T Consensus 179 ~~~----~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKN----ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLD 251 (504)
T ss_dssp HHH----TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTT
T ss_pred HHH----CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCc
Confidence 011 378899999999864 333333332 27899999999998854 2333333332 2785 89999999
Q ss_pred CCCCCHHHHHHHHHHHhCCc
Q psy5021 141 RIGANYNNCIIDIKKKFNCI 160 (1021)
Q Consensus 141 ~~~~~~~~~~~~i~~~l~~~ 160 (1021)
... .....+. +...++.+
T Consensus 252 ~~~-~~g~~l~-~~~~~g~P 269 (504)
T 2j37_W 252 GHA-KGGGALS-AVAATKSP 269 (504)
T ss_dssp SCC-CCTHHHH-HHHHHCCC
T ss_pred ccc-chHHHHH-HHHHhCCC
Confidence 863 3333333 55566643
No 383
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.92 E-value=2e-09 Score=120.64 Aligned_cols=112 Identities=15% Similarity=0.048 Sum_probs=63.5
Q ss_pred eCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHH
Q psy5021 711 SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVE 790 (1021)
Q Consensus 711 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~ 790 (1021)
..+..+.|+||||.... .......+|++++|+|+..+...+ .+.. ..+..| .++|+||+|+.+... .....
T Consensus 164 ~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~---~i~~-~il~~~-~ivVlNK~Dl~~~~~-~~~~~ 234 (349)
T 2www_A 164 GAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQ---GIKR-GIIEMA-DLVAVTKSDGDLIVP-ARRIQ 234 (349)
T ss_dssp HTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------CCSC-SEEEECCCSGGGHHH-HHHHH
T ss_pred cCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHH---HhHH-HHHhcC-CEEEEeeecCCCchh-HHHHH
Confidence 46778999999996422 123357899999999998754222 1211 124567 677889999975221 12222
Q ss_pred HHHHHhhhccccC--CCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 791 MEIRELLTEYDFD--GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 791 ~~~~~~l~~~~~~--~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
.++...++..... ....+++++||+++ .|+++|+++|.+.+
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g-----------~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSG-----------EGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTC-----------TTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCC-----------CCHHHHHHHHHHHH
Confidence 3333333322100 01357899999987 37888888876543
No 384
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.92 E-value=1.2e-08 Score=113.46 Aligned_cols=86 Identities=14% Similarity=0.060 Sum_probs=57.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc-------------cC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN-------------KF 75 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~-------------~~ 75 (1021)
.+|+|+|++|+|||||+++|........ ...+.|+..+...+.+... ..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~------------------~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~ 64 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAA------------------NYPFCTIEPNTGVVPMPDPRLDALAEIVKPERIL 64 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCccc------------------CCCCceECceEEEEecCCcccceeeeeeccccee
Confidence 3699999999999999999975331110 1122344443333333310 00
Q ss_pred ceeEEEEcCCCCCCcHH-------HHHHHhhccCeEEEEEeCCC
Q psy5021 76 KYMINIIDTPGHVDFTI-------EVERSLRVLDGAVIIICASS 112 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~-------~~~~~l~~~D~~ilvvda~~ 112 (1021)
...+++|||||+.++.. .....++.+|++++|+|+++
T Consensus 65 ~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 25799999999998753 34567899999999999986
No 385
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.90 E-value=8.6e-10 Score=124.63 Aligned_cols=97 Identities=11% Similarity=-0.045 Sum_probs=61.7
Q ss_pred CeEEEEEecCChhhh-------------HHHHHHHhhhCCEEEEEEECCCCC-c-HHHHHHHHHHHHcCCCeEEEEEeec
Q psy5021 713 NKHYAHVDCPGHADY-------------IKNMITGAAQMDGAILVCSAVDGP-M-PQTREHILLARQVGVPNIVVFLNKA 777 (1021)
Q Consensus 713 ~~~i~liDtpG~~~~-------------~~~~~~~~~~aD~ailVvDa~~g~-~-~qt~e~l~~~~~~~ip~iIvviNK~ 777 (1021)
...++||||||..++ ...+..++..+|++|+|+|+.... . ....+.+..+...+.| +|+|+||+
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~-~i~V~nK~ 213 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDR-TFGVLTKI 213 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTT-EEEEEECG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCC-EEEEEeCC
Confidence 457999999998776 666778889999999999865422 2 2223333333344677 89999999
Q ss_pred cccchhhHHHHHHHHHHHhhhccccCCCceEEEEecccccc
Q psy5021 778 DCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLAL 818 (1021)
Q Consensus 778 Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~~ 818 (1021)
|+.+..... ...+......+ ..+++++|+.++.
T Consensus 214 Dl~~~~~~~---~~~~~~~~~~~-----~~~~~~v~~~s~~ 246 (360)
T 3t34_A 214 DLMDKGTDA---VEILEGRSFKL-----KYPWVGVVNRSQA 246 (360)
T ss_dssp GGCCTTCCS---HHHHTTSSSCC-----SSCCEEECCCCHH
T ss_pred ccCCCcccH---HHHHcCccccc-----cCCeEEEEECChH
Confidence 998632211 11122222222 2467888888653
No 386
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.87 E-value=7e-09 Score=118.06 Aligned_cols=121 Identities=17% Similarity=0.217 Sum_probs=64.1
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-+|+|+|+.|+|||||+++|+..... ..| . +....+. ..|+....+.+.+...+....++++||||..
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~--~~~--~-~~~~~~~-------~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~ 99 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLY--SPE--Y-PGPSHRI-------KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFG 99 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCC--CCC--C-CSCC------------CCEEEEEECC------CEEEEEEECC---
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCC--CCC--C-CCcccCC-------ccceeeeeEEEEEecCCcccceeeeechhhh
Confidence 46899999999999999999632211 111 0 1000110 0122212222222222223578999999997
Q ss_pred CcHH------HH--------HHH-----------hhc--cCeEEEEEeCC-CCCchhHHHHHHHHhhcCCCEEEEEeCcC
Q psy5021 89 DFTI------EV--------ERS-----------LRV--LDGAVIIICAS-SGIQPQTETVWFQSQKYKVPKMIFVNKMD 140 (1021)
Q Consensus 89 ~f~~------~~--------~~~-----------l~~--~D~~ilvvda~-~g~~~~t~~~~~~~~~~~~p~iiviNK~D 140 (1021)
++.. .+ ..+ ++. ++++|++++++ .+..+....+++.+.. ++|+|+|+||+|
T Consensus 100 ~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 100 DAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp --------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTT
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEccc
Confidence 6531 11 111 122 34566777766 6888877777777654 899999999999
Q ss_pred CC
Q psy5021 141 RI 142 (1021)
Q Consensus 141 ~~ 142 (1021)
+.
T Consensus 179 ll 180 (418)
T 2qag_C 179 TL 180 (418)
T ss_dssp SS
T ss_pred Cc
Confidence 85
No 387
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.84 E-value=7e-09 Score=113.69 Aligned_cols=122 Identities=18% Similarity=0.204 Sum_probs=63.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC-
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH- 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~- 87 (1021)
-+|+++|+.|+|||||+++|....- ....| +. .+-.+ ... |+......+..+..+....++++||||+
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~-~~~~g-i~-----~~g~~--~~~--t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDL-YPERV-IS-----GAAEK--IER--TVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-----------------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCc-cCCCC-cc-----cCCcc--cCC--cceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 4789999999999999999863211 11111 10 00000 000 1111222233332334568999999998
Q ss_pred ------CCcHHHHH-------HHhhcc-------------CeEEEEEeCCC-CCchhHHHHHHHHhhcCCCEEEEEeCcC
Q psy5021 88 ------VDFTIEVE-------RSLRVL-------------DGAVIIICASS-GIQPQTETVWFQSQKYKVPKMIFVNKMD 140 (1021)
Q Consensus 88 ------~~f~~~~~-------~~l~~~-------------D~~ilvvda~~-g~~~~t~~~~~~~~~~~~p~iiviNK~D 140 (1021)
..|...+. .+++.+ +.++++++.+. +......++++.+. .++|+++|+||.|
T Consensus 88 ~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~D 166 (301)
T 2qnr_A 88 DAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKAD 166 (301)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGG
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCC
Confidence 44433332 344333 23666666554 57777766666654 4689999999999
Q ss_pred CC
Q psy5021 141 RI 142 (1021)
Q Consensus 141 ~~ 142 (1021)
+.
T Consensus 167 l~ 168 (301)
T 2qnr_A 167 TL 168 (301)
T ss_dssp GS
T ss_pred CC
Confidence 85
No 388
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.81 E-value=2.7e-09 Score=111.70 Aligned_cols=163 Identities=13% Similarity=0.110 Sum_probs=91.3
Q ss_pred cceeeeeeeeeccchhhhhhhcccccccc-----ccccccccccCCchhhhhcCceEee-eE---EEE----------ee
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIY-----GGEVRAFDTIDNAPEEKERGITIST-SH---VEY----------ES 711 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~-----~~~~~~~~~~d~~~~e~~~G~Ti~~-~~---~~~----------~~ 711 (1021)
.....++|++|+|||||+++|++...... ...+. . ..|.... ...|.+... .. ..+ ..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~-~-~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVV-S-KADYERV-RRFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCC-C-HHHHHHH-HTTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCC-C-chhHHHH-HhCCCcEEEecCCceeecccHHHHHHHHhc
Confidence 45678999999999999999987521110 00000 0 0011001 111332111 00 011 23
Q ss_pred CCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchh-hHHHHHH
Q psy5021 712 ENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDK-ELLDLVE 790 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~-~~~~~~~ 790 (1021)
.+..+.+|||+|+..- +. .....++.+++|+|+..+...+ +......+.| +++|+||+|+.+.. ...+.+.
T Consensus 107 ~~~d~iiidt~G~~~~-~~--~~~~~~~~~i~vvd~~~~~~~~----~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~~~~~ 178 (221)
T 2wsm_A 107 SDCDLLLIENVGNLIC-PV--DFDLGENYRVVMVSVTEGDDVV----EKHPEIFRVA-DLIVINKVALAEAVGADVEKMK 178 (221)
T ss_dssp TTCSEEEEEEEEBSSG-GG--GCCCSCSEEEEEEEGGGCTTHH----HHCHHHHHTC-SEEEEECGGGHHHHTCCHHHHH
T ss_pred CCCCEEEEeCCCCCCC-Cc--hhccccCcEEEEEeCCCcchhh----hhhhhhhhcC-CEEEEecccCCcchhhHHHHHH
Confidence 4567899999994110 00 0012578999999998764322 2223345678 77889999986421 1233333
Q ss_pred HHHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccC
Q psy5021 791 MEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSI 842 (1021)
Q Consensus 791 ~~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 842 (1021)
+.+. .++ ...+++++||++| .|+++++++|.+.+
T Consensus 179 ~~~~----~~~---~~~~i~~~Sa~~g-----------~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 179 ADAK----LIN---PRAKIIEMDLKTG-----------KGFEEWIDFLRGIL 212 (221)
T ss_dssp HHHH----HHC---TTSEEEECBTTTT-----------BTHHHHHHHHHHHH
T ss_pred HHHH----HhC---CCCeEEEeecCCC-----------CCHHHHHHHHHHHH
Confidence 3333 222 1368999999987 38899999887654
No 389
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.80 E-value=5.4e-09 Score=116.16 Aligned_cols=82 Identities=22% Similarity=0.168 Sum_probs=55.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC-----------------e
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN-----------------K 714 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-----------------~ 714 (1021)
+.+|++|.+|+|||||+|+|++......+. .+.|++.....+..++ .
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~----------------p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~ 66 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANY----------------PFCTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC----------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCC----------------CCceECceEEEEecCCcccceeeeeecccceeee
Confidence 568999999999999999999854221111 1223333322233333 4
Q ss_pred EEEEEecCChhhhH-------HHHHHHhhhCCEEEEEEECCC
Q psy5021 715 HYAHVDCPGHADYI-------KNMITGAAQMDGAILVCSAVD 749 (1021)
Q Consensus 715 ~i~liDtpG~~~~~-------~~~~~~~~~aD~ailVvDa~~ 749 (1021)
.+.||||||+.++. ...+..++.+|++++|+|+++
T Consensus 67 ~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 78999999987763 234567899999999999986
No 390
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.78 E-value=1.3e-07 Score=105.75 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=56.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec------------c---
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV------------N--- 73 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~------------~--- 73 (1021)
.+|+|+|++|+|||||+++|......+.. + .+.|+.++.....+.. .
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~------------~------p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~ 63 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAAN------------Y------PFATIDKNVGVVPLEDERLYALQRTFAKGERV 63 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSS------------C------CGGGGSTTEEEEECCCHHHHHHHHHHCBTTBC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccC------------C------CCceeccceeeEecChHHHHHHHHHhcccccc
Confidence 46899999999999999999865321111 0 0112222222111110 0
Q ss_pred --cCceeEEEEcCCCCCCc-------HHHHHHHhhccCeEEEEEeCCC
Q psy5021 74 --KFKYMINIIDTPGHVDF-------TIEVERSLRVLDGAVIIICASS 112 (1021)
Q Consensus 74 --~~~~~i~liDtPG~~~f-------~~~~~~~l~~~D~~ilvvda~~ 112 (1021)
.....+.+|||||..++ .......++.+|++++|+|+++
T Consensus 64 ~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 01467999999999875 3456778899999999999986
No 391
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.73 E-value=2e-08 Score=114.22 Aligned_cols=150 Identities=18% Similarity=0.152 Sum_probs=79.1
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccc-cccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYG-GEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY 727 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~ 727 (1021)
+++++++|.+++|||||+++|++......+ +... .+ ....+..+.....+...+ ..+++|||||..++
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~----~~-----~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPS----HR-----IKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------------CCEEEEEECC------CEEEEEEECC-----
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcc----cC-----CccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 456799999999999999999985421111 0000 00 001111111111122222 36899999998765
Q ss_pred HH------HHH--------HHh-----------h--hCCEEEEEEECC-CCCcHHHHHHHHHHHHcCCCeEEEEEeeccc
Q psy5021 728 IK------NMI--------TGA-----------A--QMDGAILVCSAV-DGPMPQTREHILLARQVGVPNIVVFLNKADC 779 (1021)
Q Consensus 728 ~~------~~~--------~~~-----------~--~aD~ailVvDa~-~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl 779 (1021)
.. .+. .++ . .+|++|++++.+ .+......+++..+.. +++ +|+|+||+|+
T Consensus 102 ~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~-iIlVinK~Dl 179 (418)
T 2qag_C 102 VDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKADT 179 (418)
T ss_dssp ------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSE-EEEEEESTTS
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCc-EEEEEEcccC
Confidence 32 111 111 1 245666666665 5777777666666543 677 9999999999
Q ss_pred cchhhHHHHHHHHHHHhhhccccCCCceEEEEeccccc
Q psy5021 780 VQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLA 817 (1021)
Q Consensus 780 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~ 817 (1021)
.... .....+.++.+.+...+ ++++.+|+.++
T Consensus 180 l~~~-ev~~~k~~i~~~~~~~~-----i~~~~~sa~~~ 211 (418)
T 2qag_C 180 LTPE-ECQQFKKQIMKEIQEHK-----IKIYEFPETDD 211 (418)
T ss_dssp SCHH-HHHHHHHHHHHHHHHHT-----CCCCCCC----
T ss_pred ccHH-HHHHHHHHHHHHHHHcC-----CeEEeCCCCCC
Confidence 8633 34444566666666554 45788898865
No 392
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.71 E-value=1.9e-08 Score=110.30 Aligned_cols=152 Identities=22% Similarity=0.165 Sum_probs=74.5
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC--CeEEEEEecCCh----
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE--NKHYAHVDCPGH---- 724 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~--~~~i~liDtpG~---- 724 (1021)
+++++++|.+++|||||+++|.+.......+ .. .+.. ....++........++.. ...+++|||||+
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~----~~g~--~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~ 90 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERV-IS----GAAE--KIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAI 90 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC-------------------------------CEEEEC---CCEEEEEEEEC------
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCC-cc----cCCc--ccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhc
Confidence 3566999999999999999988642221111 10 0000 000111111111222222 357899999998
Q ss_pred ---hhhHHHHH-------HHhhh-------------CCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Q psy5021 725 ---ADYIKNMI-------TGAAQ-------------MDGAILVCSAVD-GPMPQTREHILLARQVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 725 ---~~~~~~~~-------~~~~~-------------aD~ailVvDa~~-g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~ 780 (1021)
++|..... .+++. +++++++++.+. +......+.+..+. .+++ +++|+||.|+.
T Consensus 91 ~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~-iilV~~K~Dl~ 168 (301)
T 2qnr_A 91 NCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVN-IVPVIAKADTL 168 (301)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSC-EEEEECCGGGS
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCC-EEEEEEeCCCC
Confidence 44322221 22221 345666666544 46665554444332 2456 89999999997
Q ss_pred chhhHHHHHHHHHHHhhhccccCCCceEEEEeccccc
Q psy5021 781 QDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLA 817 (1021)
Q Consensus 781 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~iSa~~~ 817 (1021)
...+ ....++++.++++..+ ++++++||+++
T Consensus 169 ~~~e-~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~ 199 (301)
T 2qnr_A 169 TLKE-RERLKKRILDEIEEHN-----IKIYHLPDAES 199 (301)
T ss_dssp CHHH-HHHHHHHHHHHHHHTT-----CCCCCCC----
T ss_pred CHHH-HHHHHHHHHHHHHHcC-----CeEEecCCccc
Confidence 6332 2333456666666655 46889999976
No 393
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.71 E-value=3.8e-08 Score=105.78 Aligned_cols=112 Identities=16% Similarity=0.174 Sum_probs=69.1
Q ss_pred eEEEEEecCChhhhHHH------HHHHhhhCCEEEEEEECCCCCcHHHHH-H----HHHHHHcCCCeEEEEEeeccccch
Q psy5021 714 KHYAHVDCPGHADYIKN------MITGAAQMDGAILVCSAVDGPMPQTRE-H----ILLARQVGVPNIVVFLNKADCVQD 782 (1021)
Q Consensus 714 ~~i~liDtpG~~~~~~~------~~~~~~~aD~ailVvDa~~g~~~qt~e-~----l~~~~~~~ip~iIvviNK~Dl~~~ 782 (1021)
..+.||||||+.++... +...+.. +++++|+|+.......... . +......++| +++|+||+|+...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGAT-TIPALNKVDLLSE 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSC-EEEEECCGGGCCH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCC-eEEEEeccccccc
Confidence 47999999998776422 2234455 8999999987655443322 1 1223345788 8889999998763
Q ss_pred hhHHHHHHHHH---HHh---------------------hhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhh
Q psy5021 783 KELLDLVEMEI---REL---------------------LTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVL 838 (1021)
Q Consensus 783 ~~~~~~~~~~~---~~~---------------------l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l 838 (1021)
.+ .+.+.+.+ ..+ ++.++. ..+++++||+++ +++++|+++|
T Consensus 187 ~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~SA~~~-----------~gi~~l~~~i 251 (262)
T 1yrb_A 187 EE-KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP---PVRVLYLSAKTR-----------EGFEDLETLA 251 (262)
T ss_dssp HH-HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC---CCCCEECCTTTC-----------TTHHHHHHHH
T ss_pred cc-HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC---cccceEEEecCc-----------ccHHHHHHHH
Confidence 21 11111111 111 122221 246899999987 3889999988
Q ss_pred hccC
Q psy5021 839 DSSI 842 (1021)
Q Consensus 839 ~~~l 842 (1021)
.+.+
T Consensus 252 ~~~~ 255 (262)
T 1yrb_A 252 YEHY 255 (262)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 394
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.68 E-value=3.7e-08 Score=109.64 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=38.3
Q ss_pred ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 76 KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
++.+.||||||..+-.. .....+|.+++|+|+..+...+. +.. ...++|.++++||+|+.
T Consensus 147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~--~i~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKK--GIFELADMIAVNKADDG 206 (337)
T ss_dssp TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCT--THHHHCSEEEEECCSTT
T ss_pred CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHH--HHhccccEEEEEchhcc
Confidence 67899999999865322 23478999999999875532110 000 01135778889999974
No 395
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.68 E-value=6.2e-08 Score=108.42 Aligned_cols=82 Identities=20% Similarity=0.149 Sum_probs=54.9
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEe---------------------
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYE--------------------- 710 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~--------------------- 710 (1021)
+++|++|.+|+|||||+|+|++....+.+.++ .|++.......
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~----------------~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~ 65 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPF----------------ATIDKNVGVVPLEDERLYALQRTFAKGERVPP 65 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCG----------------GGGSTTEEEEECCCHHHHHHHHHHCBTTBCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCC----------------ceeccceeeEecChHHHHHHHHHhcccccccc
Confidence 46799999999999999999985322221111 11111111111
Q ss_pred eCCeEEEEEecCChhhh-------HHHHHHHhhhCCEEEEEEECCC
Q psy5021 711 SENKHYAHVDCPGHADY-------IKNMITGAAQMDGAILVCSAVD 749 (1021)
Q Consensus 711 ~~~~~i~liDtpG~~~~-------~~~~~~~~~~aD~ailVvDa~~ 749 (1021)
.....+.||||||+.++ .......++.+|++++|+|+++
T Consensus 66 ~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 66 VVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp EECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 12357899999998764 2456677899999999999986
No 396
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.67 E-value=3.4e-08 Score=103.55 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=65.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc--cCCcccccChHHHhhhCce---eeeee-eEEE-eec------
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV--HHGTTITDWMQQEQERGIT---ITSAS-VSIF-WEV------ 72 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~--~~~~~~~d~~~~e~~rgiT---i~~~~-~~~~-~~~------ 72 (1021)
.+.++|+++|+.|+|||||+++|+...........+ +.+ +..|....+.. |.. +.... ..+. |..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~-~~~d~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI-AKFDAERMEKH-GAKVVPLNTGKECHLDAHLVGHALED 113 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT-THHHHHHHHTT-TCEEEEEECTTCSSCCHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC-CCccHHHHHhc-CCcEEEecCCceEeccHHHHHHHHHH
Confidence 467999999999999999999998654221111111 111 11222111111 111 11000 0000 000
Q ss_pred -ccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 73 -NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 73 -~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
...++.+.++||+|...-... .-...+..+.++|+..+...... .....+.|.++++||+|+.
T Consensus 114 l~~~~~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 114 LNLDEIDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLA 177 (226)
T ss_dssp SCGGGCSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGH
T ss_pred HhcCCCCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccC
Confidence 011347899999995321100 11245667888987554322211 1122468999999999974
No 397
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.64 E-value=3.8e-08 Score=109.75 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=86.2
Q ss_pred ceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCC-----------cHHHHHHHHHHHH----
Q psy5021 700 ITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-----------MPQTREHILLARQ---- 764 (1021)
Q Consensus 700 ~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~-----------~~qt~e~l~~~~~---- 764 (1021)
.|+......+..++..+.+|||+|+++|.+.+..+++.+|++|+|+|.++-. +.....++..+..
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 3444445566777889999999999999999999999999999999988621 2333444444433
Q ss_pred cCCCeEEEEEeeccccchh----------------hHHHHHHHHHHHhhhcccc--CCCceEEEEecccccccCCCCCcc
Q psy5021 765 VGVPNIVVFLNKADCVQDK----------------ELLDLVEMEIRELLTEYDF--DGENTKIVIGSALLALEGKDDNQL 826 (1021)
Q Consensus 765 ~~ip~iIvviNK~Dl~~~~----------------~~~~~~~~~~~~~l~~~~~--~~~~~~ii~iSa~~~~~~~~~~~~ 826 (1021)
.++| +|+++||+|+.... ...++..+-+...+..+.. ....+.++.+||+++
T Consensus 259 ~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~--------- 328 (353)
T 1cip_A 259 TDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT--------- 328 (353)
T ss_dssp TTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH---------
T ss_pred cCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc---------
Confidence 2566 99999999985311 0122222222222222211 123578899999987
Q ss_pred CcchHHHHHHhhhcc
Q psy5021 827 GTTSIKKLLDVLDSS 841 (1021)
Q Consensus 827 ~~~~i~~Ll~~l~~~ 841 (1021)
.|+..+++++.+.
T Consensus 329 --~nV~~vF~~v~~~ 341 (353)
T 1cip_A 329 --KNVQFVFDAVTDV 341 (353)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHH
Confidence 4888888877653
No 398
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.63 E-value=1.9e-07 Score=106.92 Aligned_cols=225 Identities=12% Similarity=0.081 Sum_probs=114.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHc----CCCcccccccCCc-ccccCh-HHHhhhCceeeeeee-----EE---Eee
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYS----GSSHKIGEVHHGT-TITDWM-QQEQERGITITSASV-----SI---FWE 71 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~----~~~~~~g~~~~~~-~~~d~~-~~e~~rgiTi~~~~~-----~~---~~~ 71 (1021)
...++|+++|+.|+||||++..|.+.. |.-.-.-+.+... ...+.. ......|+.+-.... .+ .+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 357899999999999999999997432 2211111111110 011100 012234444433210 00 000
Q ss_pred c-ccCceeEEEEcCCCCCCcHHHHHHH------hhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCE-EEEEeCcCCCC
Q psy5021 72 V-NKFKYMINIIDTPGHVDFTIEVERS------LRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPK-MIFVNKMDRIG 143 (1021)
Q Consensus 72 ~-~~~~~~i~liDtPG~~~f~~~~~~~------l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~-iiviNK~D~~~ 143 (1021)
. ...++.+.||||||...+......+ +..+|.+++|+|+..|.. .....+... .++++ -+++||+|...
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f~-~~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAFN-EALPLTGVVLTKVDGDA 254 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHHH-HHSCCCCEEEECTTSSS
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHHh-ccCCCeEEEEecCCCCc
Confidence 0 1136889999999987765444443 346789999999987732 222222221 23553 46899999753
Q ss_pred CCHHHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeee-ccCChhhHHHHHHHHHHHHHHhcCCCH
Q psy5021 144 ANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIII-KNIDKDQLSAFDYYNELMLETLSNNDE 222 (1021)
Q Consensus 144 ~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~e~~~~~d~ 222 (1021)
... ...++...++.+.. |.|....+ .....|+++.+.. ..-..+....++.+++.+ ..+.++
T Consensus 255 -~~g-~~l~i~~~~~~Pi~-----------~iG~ge~v-~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~~---~~~~~~ 317 (433)
T 2xxa_A 255 -RGG-AALSIRHITGKPIK-----------FLGVGEKT-EALEPFHPDRIASRILGMGDVLSLIEDIESKV---DRAQAE 317 (433)
T ss_dssp -CCT-HHHHHHHHHCCCEE-----------EEECSSSS-SCEEECCHHHHHHHHHCCCTTHHHHHHHHHHH---HHHHHH
T ss_pred -cHH-HHHHHHHHHCCCeE-----------EEecCCCc-hhhhhcChHHHHHHHhCccchHHHHHHHHHhh---hhhhhH
Confidence 332 33356666664332 11211111 0111222211000 000001111122222111 123468
Q ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHhcCc
Q psy5021 223 FFLEKYINN-NYSINDIKNSIRKLVLKNK 250 (1021)
Q Consensus 223 ~l~e~~l~~-~~~~~~~~~~~~~~~~~~~ 250 (1021)
+++++|+++ +++.+++...+++....+.
T Consensus 318 ~l~~k~~~~~~f~~~d~~~ql~~~~~~g~ 346 (433)
T 2xxa_A 318 KLASKLKKGDGFDLNDFLEQLRQMKNMGG 346 (433)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHSCSS
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Confidence 899999999 8999999999998765543
No 399
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.55 E-value=6.8e-08 Score=107.50 Aligned_cols=112 Identities=16% Similarity=0.044 Sum_probs=62.4
Q ss_pred eCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHH
Q psy5021 711 SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVE 790 (1021)
Q Consensus 711 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~ 790 (1021)
..+..+.|+||||..+-- ......+|++++|+|+..+...+ .+.. ....++ .++++||+|+...........
T Consensus 145 ~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~---~i~~-~i~~~~-~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQ---GIKK-GIFELA-DMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp HTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC---------CCT-THHHHC-SEEEEECCSTTCCHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHH---HHHH-HHhccc-cEEEEEchhccCchhHHHHHH
Confidence 467899999999965321 12247899999999986542111 1100 001235 355679999754222222233
Q ss_pred HHHHHhhhccccC--CCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 791 MEIRELLTEYDFD--GENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 791 ~~~~~~l~~~~~~--~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
+++...+..+.-. ....+++++||+++. ++++|++.|.+.
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~-----------gi~~L~~~I~~~ 258 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGK-----------GLDSLWSRIEDH 258 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTB-----------SHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCC-----------CHHHHHHHHHHH
Confidence 4444433322200 002468889999873 777777777654
No 400
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.55 E-value=9.8e-08 Score=106.78 Aligned_cols=129 Identities=17% Similarity=0.200 Sum_probs=77.0
Q ss_pred eEeeeEEEEeeCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHH----c
Q psy5021 701 TISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-----------PMPQTREHILLARQ----V 765 (1021)
Q Consensus 701 Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g-----------~~~qt~e~l~~~~~----~ 765 (1021)
|+......+..++..+.+|||+|+++|.+.+..++..++++|+|+|.++- -+.....++..+.. .
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 44444456677788999999999999999999999999999999999872 12333444444433 2
Q ss_pred CCCeEEEEEeeccccchh-----------------hHHHHHHHHHHHhhhccccC--CCceEEEEecccccccCCCCCcc
Q psy5021 766 GVPNIVVFLNKADCVQDK-----------------ELLDLVEMEIRELLTEYDFD--GENTKIVIGSALLALEGKDDNQL 826 (1021)
Q Consensus 766 ~ip~iIvviNK~Dl~~~~-----------------~~~~~~~~~~~~~l~~~~~~--~~~~~ii~iSa~~~~~~~~~~~~ 826 (1021)
++| +|+++||+|+.+.. ...++..+-+...+..+.-. ...+.++++||+++
T Consensus 268 ~~p-iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~--------- 337 (362)
T 1zcb_A 268 NVS-IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT--------- 337 (362)
T ss_dssp TSE-EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH---------
T ss_pred CCC-EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc---------
Confidence 566 99999999986311 11222222221111111111 23467899999987
Q ss_pred CcchHHHHHHhhhcc
Q psy5021 827 GTTSIKKLLDVLDSS 841 (1021)
Q Consensus 827 ~~~~i~~Ll~~l~~~ 841 (1021)
.|+..+++++.+.
T Consensus 338 --~nV~~vF~~v~~~ 350 (362)
T 1zcb_A 338 --ENIRLVFRDVKDT 350 (362)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHH
Confidence 4888888777553
No 401
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.54 E-value=1.1e-07 Score=106.03 Aligned_cols=82 Identities=11% Similarity=0.101 Sum_probs=63.0
Q ss_pred hCceeeeeeeEEEeecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-----------chhHHHHHHHH
Q psy5021 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-----------QPQTETVWFQS 125 (1021)
Q Consensus 57 rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-----------~~~t~~~~~~~ 125 (1021)
+..|+......+.++ +..+.+|||+|+..|...+..+++.++++|+|+|.++-. .......|...
T Consensus 177 ~~~T~Gi~~~~~~~~----~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i 252 (353)
T 1cip_A 177 RVKTTGIVETHFTFK----DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI 252 (353)
T ss_dssp CCCCCSEEEEEEEET----TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHH
T ss_pred cCceeceEEEEEeeC----CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHH
Confidence 445655555566666 789999999999999999999999999999999998732 12233444444
Q ss_pred hh----cCCCEEEEEeCcCCC
Q psy5021 126 QK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 126 ~~----~~~p~iiviNK~D~~ 142 (1021)
.. .++|+++|+||+|+.
T Consensus 253 ~~~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 253 CNNKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp HTCGGGTTSEEEEEEECHHHH
T ss_pred HcCccccCCcEEEEEECcCch
Confidence 33 479999999999973
No 402
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.43 E-value=2.6e-07 Score=103.36 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=53.6
Q ss_pred ceeeeeeeEEEeecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-----------chhHHHHHHHHhh
Q psy5021 59 ITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-----------QPQTETVWFQSQK 127 (1021)
Q Consensus 59 iTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-----------~~~t~~~~~~~~~ 127 (1021)
.|+......+.++ +..+.+|||||+..|...+..+++.++++|+|+|.++-. .......|.....
T Consensus 187 ~T~Gi~~~~~~~~----~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 187 PTKGIHEYDFEIK----NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp CCSSEEEEEEEET----TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred CccceEEEEeeeC----CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence 3444444455555 789999999999999999999999999999999999731 1223344544432
Q ss_pred ----cCCCEEEEEeCcCCC
Q psy5021 128 ----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 128 ----~~~p~iiviNK~D~~ 142 (1021)
.++|+|+|+||+|+.
T Consensus 263 ~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 263 NRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp CGGGTTSEEEEEEECHHHH
T ss_pred chhhCCCCEEEEEEChhhh
Confidence 478999999999973
No 403
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.40 E-value=1.7e-06 Score=98.38 Aligned_cols=217 Identities=17% Similarity=0.133 Sum_probs=102.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHc---CCCcccccccCC-cccccChH-HHhhhCceeeeeeeEEE--------e-ec
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYS---GSSHKIGEVHHG-TTITDWMQ-QEQERGITITSASVSIF--------W-EV 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~---~~~~~~g~~~~~-~~~~d~~~-~e~~rgiTi~~~~~~~~--------~-~~ 72 (1021)
+-+.|+++|+.|+||||++..|.... |.-...-..+.. ....+... .....|+.+........ . ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35789999999999999999987422 111000000000 00000000 00112332221100000 0 00
Q ss_pred ccCceeEEEEcCCCCCC------cHHHHHHHhh--ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 73 NKFKYMINIIDTPGHVD------FTIEVERSLR--VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~------f~~~~~~~l~--~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
...++.+.+|||||... +..++....+ ..|.+++|+|+..|... ....+.....--+..+++||+|.. +
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a--~~~a~~f~~~~~~~gVIlTKlD~~-a 252 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA--YDLASRFHQASPIGSVIITKMDGT-A 252 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG--HHHHHHHHHHCSSEEEEEECGGGC-S
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH--HHHHHHHhcccCCcEEEEeccccc-c
Confidence 11367899999999754 3344433222 35999999999976332 223333333335678899999985 4
Q ss_pred CHHHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeec-cCChhhHH------HHHHHHHHHHHHh
Q psy5021 145 NYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIK-NIDKDQLS------AFDYYNELMLETL 217 (1021)
Q Consensus 145 ~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~l~e~~ 217 (1021)
.....+ ++....+.+... ++.+.+.. ... ..|+.+.+ .+...++++-+.+
T Consensus 253 ~~G~al-s~~~~~g~Pi~f----ig~Ge~v~------------------dL~~f~p~~~~~~llg~gd~~~l~e~~~~~~ 309 (433)
T 3kl4_A 253 KGGGAL-SAVVATGATIKF----IGTGEKID------------------ELETFNAKRFVSRILGMGDIESILEKVKGLE 309 (433)
T ss_dssp CHHHHH-HHHHHHTCEEEE----EECCSSSS------------------CEEECCHHHHHHHHHCSSHHHHHHHHHHHC-
T ss_pred cchHHH-HHHHHHCCCEEE----EECCCChH------------------hCccCCHHHHHHHhcCCchHHHHHHHHHHhh
Confidence 444333 333445543211 11111110 011 12333443 3445666776766
Q ss_pred cCCC-HHHHHHHHcC--CCCHHHHHHHHHHHHhcC
Q psy5021 218 SNND-EFFLEKYINN--NYSINDIKNSIRKLVLKN 249 (1021)
Q Consensus 218 ~~~d-~~l~e~~l~~--~~~~~~~~~~~~~~~~~~ 249 (1021)
.+.+ ++++++|.++ +++-++++..+++.-..+
T Consensus 310 ~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~kmg 344 (433)
T 3kl4_A 310 EYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMG 344 (433)
T ss_dssp ------------------CCHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcc
Confidence 6655 7799999999 899999999888765554
No 404
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.38 E-value=3.3e-08 Score=111.52 Aligned_cols=132 Identities=12% Similarity=0.067 Sum_probs=81.1
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
++|+++|.+|+|||||+|+|+........ ..... ..+|.|..... +.+. ..+.++||||..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~------~~~~~------~~~gtT~~~~~--~~~~-----~~~~liDtPG~~ 223 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGN------VITTS------YFPGTTLDMIE--IPLE-----SGATLYDTPGII 223 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTC------CCEEE------ECTTSSCEEEE--EECS-----TTCEEEECCSCC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCcc------ceeec------CCCCeEEeeEE--EEeC-----CCeEEEeCCCcC
Confidence 57999999999999999999865210000 00000 12345554332 2222 248999999975
Q ss_pred CcH-------HHHHHHh---hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC-CHHHHHHHHHHHh
Q psy5021 89 DFT-------IEVERSL---RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA-NYNNCIIDIKKKF 157 (1021)
Q Consensus 89 ~f~-------~~~~~~l---~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~-~~~~~~~~i~~~l 157 (1021)
+.. .+....+ ...|.+++++|+...........+.++...+.|+++++||+|.... +.+...+.+++.+
T Consensus 224 ~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~ 303 (369)
T 3ec1_A 224 NHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQL 303 (369)
T ss_dssp CCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHB
T ss_pred cHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHhc
Confidence 432 2233334 6789999999985321111111134445567899999999998643 3566667777778
Q ss_pred CC
Q psy5021 158 NC 159 (1021)
Q Consensus 158 ~~ 159 (1021)
|.
T Consensus 304 g~ 305 (369)
T 3ec1_A 304 GE 305 (369)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 405
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.37 E-value=3.9e-07 Score=104.36 Aligned_cols=226 Identities=18% Similarity=0.181 Sum_probs=107.7
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcC---CCcccccccCC-cccccChHH-HhhhCceeeeee-e-----EEEeec--c
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSG---SSHKIGEVHHG-TTITDWMQQ-EQERGITITSAS-V-----SIFWEV--N 73 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~---~~~~~g~~~~~-~~~~d~~~~-e~~rgiTi~~~~-~-----~~~~~~--~ 73 (1021)
..++|+++|++|+||||++..|..... .-...-+.+.. ....+.... ....|+.+.... . .+.... .
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 357899999999999999999975321 10000000100 011111111 111222222111 0 000000 0
Q ss_pred cCceeEEEEcCCCCCCcHHHHHHHh------hccCeEEEEEeCCCCCchhHHHHHHHHhhcCC-C-EEEEEeCcCCCCCC
Q psy5021 74 KFKYMINIIDTPGHVDFTIEVERSL------RVLDGAVIIICASSGIQPQTETVWFQSQKYKV-P-KMIFVNKMDRIGAN 145 (1021)
Q Consensus 74 ~~~~~i~liDtPG~~~f~~~~~~~l------~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~-p-~iiviNK~D~~~~~ 145 (1021)
-.++.+.||||||...........+ ..+|.+++|+|+..|.. .....+.. ...+ | ..+++||+|... .
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~~~~~~~-~~~~~~i~gvVlnK~D~~~-~ 253 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AGIQAKAF-KEAVGEIGSIIVTKLDGSA-K 253 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HHHHHHHH-HTTSCSCEEEEEECSSSCS-T
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HHHHHHHH-hhcccCCeEEEEeCCCCcc-c
Confidence 1367899999999876543333322 25899999999987742 22222222 2346 7 788999999853 3
Q ss_pred HHHHHHHHHHHhCCceeeeeeecccCCceeeEEecccceeeeecCCCeeeccCChhhHHHHHHH--HHHHHHH----hcC
Q psy5021 146 YNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYY--NELMLET----LSN 219 (1021)
Q Consensus 146 ~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~e~----~~~ 219 (1021)
....+ ++...++.+... ++.+..+. |+.. |.+. .+....... ...|+|. +.+
T Consensus 254 ~g~~l-~~~~~~~~pi~~----ig~Ge~~~---dl~~-----f~~~---------~~~s~l~g~gdi~~L~e~~~~~~~e 311 (432)
T 2v3c_C 254 GGGAL-SAVAETKAPIKF----IGIGEGID---DLEP-----FDPK---------KFISRLLGMGDLESLLEKAEDMVDE 311 (432)
T ss_dssp THHHH-HHHHHSSCCEEE----ECCSSSSS---SCCB-----CCHH---------HHHHHHTCSSCSSTTSSTTTSCSCS
T ss_pred hHHHH-HHHHHHCCCEEE----eecCcccc---cccc-----CCHH---------HHHHHHcCCCcHHHHHHHHHHHHHh
Confidence 33333 466667654321 22222221 1110 1110 000000000 0122222 234
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHhcC---ceeEEEecc
Q psy5021 220 NDEFFLEKYINNNYSINDIKNSIRKLVLKN---KIIPIMCGS 258 (1021)
Q Consensus 220 ~d~~l~e~~l~~~~~~~~~~~~~~~~~~~~---~~~Pv~~~S 258 (1021)
.++++.++|+.++++.+++...+++....+ .+++.++++
T Consensus 312 ~~~~~~~k~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~ 353 (432)
T 2v3c_C 312 KTEESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGF 353 (432)
T ss_dssp SSSTTHHHHCCSCCHHHHHHHHTTTTSCC-------------
T ss_pred hhHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHcccc
Confidence 446688999888888888888877655444 445555554
No 406
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.37 E-value=1.1e-06 Score=96.63 Aligned_cols=83 Identities=19% Similarity=0.240 Sum_probs=62.7
Q ss_pred cCceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCC----------C-CcHHHHHHHHHHHH--
Q psy5021 698 RGITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVD----------G-PMPQTREHILLARQ-- 764 (1021)
Q Consensus 698 ~G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~----------g-~~~qt~e~l~~~~~-- 764 (1021)
+..|+......+...+..+.+|||+|+++|.+.+..+++.++++|+|+|.++ . -+.....++..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 3445555666777788999999999999999999999999999999999872 1 12333444444433
Q ss_pred --cCCCeEEEEEeeccccc
Q psy5021 765 --VGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 765 --~~ip~iIvviNK~Dl~~ 781 (1021)
.++| +|+++||+|+..
T Consensus 225 ~~~~~p-iiLv~NK~DL~~ 242 (340)
T 4fid_A 225 FLKGAV-KLIFLNKMDLFE 242 (340)
T ss_dssp GGTTSE-EEEEEECHHHHH
T ss_pred ccCCCe-EEEEEECchhhh
Confidence 2566 999999999864
No 407
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.35 E-value=1.1e-06 Score=96.37 Aligned_cols=131 Identities=11% Similarity=0.155 Sum_probs=85.5
Q ss_pred CceEeeeEEEEeeCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECC-------CCC----cHHHHHHHHHHHH---
Q psy5021 699 GITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAV-------DGP----MPQTREHILLARQ--- 764 (1021)
Q Consensus 699 G~Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~-------~g~----~~qt~e~l~~~~~--- 764 (1021)
..|+......++.++..+.+|||+|+++|.+.+..+++.++++|+|+|.+ +.. +......+..+..
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 34555566677788899999999999999999999999999999999765 211 1233344443332
Q ss_pred -cCCCeEEEEEeeccccchh-----------------hHHHHHHHHHHHhhhcccc-CCCceEEEEecccccccCCCCCc
Q psy5021 765 -VGVPNIVVFLNKADCVQDK-----------------ELLDLVEMEIRELLTEYDF-DGENTKIVIGSALLALEGKDDNQ 825 (1021)
Q Consensus 765 -~~ip~iIvviNK~Dl~~~~-----------------~~~~~~~~~~~~~l~~~~~-~~~~~~ii~iSa~~~~~~~~~~~ 825 (1021)
.++| +|+++||+|+.+.+ ...++..+-+...+..+.. ....+.+..+||+.+
T Consensus 232 ~~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~-------- 302 (327)
T 3ohm_A 232 FQNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT-------- 302 (327)
T ss_dssp GTTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH--------
T ss_pred cCCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC--------
Confidence 2566 99999999986421 1122222222222222211 123467788999977
Q ss_pred cCcchHHHHHHhhhcc
Q psy5021 826 LGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 826 ~~~~~i~~Ll~~l~~~ 841 (1021)
.|+..+++.+.+.
T Consensus 303 ---~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 303 ---ENIRFVFAAVKDT 315 (327)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHH
Confidence 4788877777653
No 408
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.35 E-value=1.3e-06 Score=98.40 Aligned_cols=80 Identities=15% Similarity=0.260 Sum_probs=60.4
Q ss_pred eEeeeEEEEeeCCeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCC----------CC-cHHHHHHHHHHHHc----
Q psy5021 701 TISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVD----------GP-MPQTREHILLARQV---- 765 (1021)
Q Consensus 701 Ti~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~----------g~-~~qt~e~l~~~~~~---- 765 (1021)
|+......+..++..+.+|||+|+++|.+.+..+++.++++|+|+|.++ .. +.....++..+...
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4434445566778899999999999999999999999999999999986 21 23344455444332
Q ss_pred CCCeEEEEEeeccccc
Q psy5021 766 GVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 766 ~ip~iIvviNK~Dl~~ 781 (1021)
++| +|+++||+|+..
T Consensus 284 ~~p-iiLvgNK~DL~~ 298 (402)
T 1azs_C 284 TIS-VILFLNKQDLLA 298 (402)
T ss_dssp SCC-EEEEEECHHHHH
T ss_pred CCe-EEEEEEChhhhh
Confidence 467 999999999854
No 409
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.34 E-value=1.6e-06 Score=98.15 Aligned_cols=135 Identities=17% Similarity=0.193 Sum_probs=79.0
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
.+.|++|+|+.|+|||||++.|+... + . |..... ...+.+.. .+.+.++..+....++++|+||
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~--l------~-g~~~~~-----~~~~~~~~--~i~~v~Q~~~l~~~ltv~D~~~ 104 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTK--F------E-GEPATH-----TQPGVQLQ--SNTYDLQESNVRLKLTIVSTVG 104 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSC--C-------------------CCSSCEEE--EEEEEEEC--CEEEEEEEEEEC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCcc--c------c-CCcCCC-----CCccceEe--eEEEEeecCccccccchhhhhh
Confidence 45679999999999999999996431 0 0 000000 01122332 2333333222223689999999
Q ss_pred CCCcH--------------HHHHHHhh-------------cc--C-eEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEE
Q psy5021 87 HVDFT--------------IEVERSLR-------------VL--D-GAVIIICASSGIQPQTETVWFQSQKYKVPKMIFV 136 (1021)
Q Consensus 87 ~~~f~--------------~~~~~~l~-------------~~--D-~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iivi 136 (1021)
..+.. ..+..++. .+ | ++++++|+..+......++++.+. .++|+|+|+
T Consensus 105 ~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi 183 (427)
T 2qag_B 105 FGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPII 183 (427)
T ss_dssp CCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEE
T ss_pred hhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEE
Confidence 85431 11212211 11 2 467788999999998888888876 789999999
Q ss_pred eCcCCCCC-CHHHHHHHHHHHhC
Q psy5021 137 NKMDRIGA-NYNNCIIDIKKKFN 158 (1021)
Q Consensus 137 NK~D~~~~-~~~~~~~~i~~~l~ 158 (1021)
||+|.... +.......+++.|.
T Consensus 184 ~KtD~Lt~~E~~~l~~~I~~~L~ 206 (427)
T 2qag_B 184 AKADAISKSELTKFKIKITSELV 206 (427)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHB
T ss_pred cchhccchHHHHHHHHHHHHHHH
Confidence 99998643 34455556665553
No 410
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.34 E-value=1.1e-06 Score=99.51 Aligned_cols=134 Identities=16% Similarity=0.228 Sum_probs=74.9
Q ss_pred eeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC--eEEEEEecCChhhh---
Q psy5021 653 TKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN--KHYAHVDCPGHADY--- 727 (1021)
Q Consensus 653 t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~--~~i~liDtpG~~~~--- 727 (1021)
+.|++|.+|+|||||+|.|.+.. +.+... .....+.+.......+...+ ..++++|+||....
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~--l~g~~~----------~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~ 111 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTK--FEGEPA----------THTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINK 111 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSC--C-----------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCH
T ss_pred EEEEECCCCCCHHHHHHHHhCcc--ccCCcC----------CCCCccceEeeEEEEeecCccccccchhhhhhhhhcccc
Confidence 47999999999999999999852 111000 00012333332222233222 36899999995432
Q ss_pred ----------HHH-H---HHHh---h-------hC--C-EEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Q psy5021 728 ----------IKN-M---ITGA---A-------QM--D-GAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 728 ----------~~~-~---~~~~---~-------~a--D-~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~ 780 (1021)
+.. + +... . .+ | +++||+|+.++......+.+..+. .++| +|+|+||+|..
T Consensus 112 ~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~-vI~Vi~KtD~L 189 (427)
T 2qag_B 112 EDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVN-IIPIIAKADAI 189 (427)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSE-EEEEESCGGGS
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCC-EEEEEcchhcc
Confidence 111 1 1111 1 11 2 477788998888888777776665 5666 99999999988
Q ss_pred chhhHHHHHHHHHHHhhhccc
Q psy5021 781 QDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 781 ~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
...+ .......+.+.++..|
T Consensus 190 t~~E-~~~l~~~I~~~L~~~g 209 (427)
T 2qag_B 190 SKSE-LTKFKIKITSELVSNG 209 (427)
T ss_dssp CHHH-HHHHHHHHHHHHBTTB
T ss_pred chHH-HHHHHHHHHHHHHHcC
Confidence 6433 4445555655444433
No 411
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.29 E-value=8.4e-06 Score=92.33 Aligned_cols=113 Identities=14% Similarity=0.075 Sum_probs=67.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-.++|+|+.|+|||||++.|...... ..|.+ ..+-.+. |.. .+.++. .....++++|+||..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI-----~~~g~~~------t~~----~~v~q~-~~~~~ltv~D~~g~~ 131 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNE--EEGAA-----KTGVVEV------TME----RHPYKH-PNIPNVVFWDLPGIG 131 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTT--STTSC-----CCCC----------CC----CEEEEC-SSCTTEEEEECCCGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCc--cCceE-----EECCeec------cee----EEeccc-cccCCeeehHhhccc
Confidence 48999999999999999999742110 11222 1111110 100 112221 112368999999963
Q ss_pred Cc---HHHHHHH--hhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCC
Q psy5021 89 DF---TIEVERS--LRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDR 141 (1021)
Q Consensus 89 ~f---~~~~~~~--l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~ 141 (1021)
.- ..+.... +...|..++ +++.. .+.|...+.+.+...+.|+++|+||.|+
T Consensus 132 ~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdl 187 (413)
T 1tq4_A 132 STNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDS 187 (413)
T ss_dssp GSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred chHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcc
Confidence 21 2223222 233455554 77754 4778888888888889999999999986
No 412
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.28 E-value=4.3e-07 Score=101.83 Aligned_cols=83 Identities=20% Similarity=0.210 Sum_probs=50.3
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeC-----------------C
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESE-----------------N 713 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~-----------------~ 713 (1021)
...+|++|.+|+|||||+|+|++..... ....+.|++.....+... .
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~----------------~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~ 85 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASA----------------ENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIP 85 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHHCCSEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccc----------------cCCCccccCceeEEEEECCccceeeccccCcccccc
Confidence 4678999999999999999999854211 112234444444333332 2
Q ss_pred eEEEEEecCChhhhHH-------HHHHHhhhCCEEEEEEECCC
Q psy5021 714 KHYAHVDCPGHADYIK-------NMITGAAQMDGAILVCSAVD 749 (1021)
Q Consensus 714 ~~i~liDtpG~~~~~~-------~~~~~~~~aD~ailVvDa~~ 749 (1021)
..+.||||||+.++.. .+..+++.+|++++|+|+.+
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 3589999999887644 56778899999999999975
No 413
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.28 E-value=1.2e-07 Score=106.90 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=79.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCC-cccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSS-HKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGH 87 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~-~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 87 (1021)
++|+++|.+|+|||||+|+|+...... .. ..... ..+|.|..... +.+. ..+.++||||.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~------~~~~~------~~~gtT~~~~~--~~~~-----~~~~liDtPG~ 221 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETEN------VITTS------HFPGTTLDLID--IPLD-----EESSLYDTPGI 221 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSS------CCEEE------CCC----CEEE--EESS-----SSCEEEECCCB
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcccccc------ceecC------CCCCeecceEE--EEec-----CCeEEEeCCCc
Confidence 579999999999999999998653211 00 00011 12344544332 2222 23899999998
Q ss_pred CCcH-------HHHHHH---hhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC-CHHHHHHHHHHH
Q psy5021 88 VDFT-------IEVERS---LRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA-NYNNCIIDIKKK 156 (1021)
Q Consensus 88 ~~f~-------~~~~~~---l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~-~~~~~~~~i~~~ 156 (1021)
.+.. .+.... ....+..++++|+...........+.++...+.|+++++||+|.... +.+...+.+++.
T Consensus 222 ~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~ 301 (368)
T 3h2y_A 222 INHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNH 301 (368)
T ss_dssp CCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHH
T ss_pred CcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHH
Confidence 5432 222222 35678999999984321111111133445567899999999998754 356677777788
Q ss_pred hCCc
Q psy5021 157 FNCI 160 (1021)
Q Consensus 157 l~~~ 160 (1021)
+|..
T Consensus 302 ~g~~ 305 (368)
T 3h2y_A 302 AGDL 305 (368)
T ss_dssp BTTT
T ss_pred hCCc
Confidence 8753
No 414
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.28 E-value=3.4e-06 Score=90.52 Aligned_cols=137 Identities=17% Similarity=0.176 Sum_probs=77.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecccCceeEEEEcCCCCC
Q psy5021 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHV 88 (1021)
Q Consensus 9 rni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 88 (1021)
-|++++|+.|+|||||++.|....... .|.+.-... +. ..+.....+.+..+..+-...++++|+||..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~--~G~i~~~g~--~i-------~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g 71 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSR--KASSWNREE--KI-------PKTVEIKAIGHVIEEGGVKMKLTVIDTPGFG 71 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC----------------C-------CCCCSCCEEEESCC----CCEEEEECCCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCC--CCccccCCc--cc-------CcceeeeeeEEEeecCCCcCCceEEechhhh
Confidence 489999999999999999998543221 122210000 00 0011111122222211223468999999974
Q ss_pred CcH------HH--------HHHH--------------hhccCeEEEEEeCC-CCCchhHHHHHHHHhhcCCCEEEEEeCc
Q psy5021 89 DFT------IE--------VERS--------------LRVLDGAVIIICAS-SGIQPQTETVWFQSQKYKVPKMIFVNKM 139 (1021)
Q Consensus 89 ~f~------~~--------~~~~--------------l~~~D~~ilvvda~-~g~~~~t~~~~~~~~~~~~p~iiviNK~ 139 (1021)
+.. .. .... +..++++++++|.. +|..+...++++.+... +++|+++||+
T Consensus 72 ~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 72 DQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKA 150 (270)
T ss_dssp CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTG
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEecc
Confidence 311 01 1111 12257889999965 89999999999888776 9999999999
Q ss_pred CCCCCC-HHHHHHHHHHHh
Q psy5021 140 DRIGAN-YNNCIIDIKKKF 157 (1021)
Q Consensus 140 D~~~~~-~~~~~~~i~~~l 157 (1021)
|....+ .......+++.+
T Consensus 151 D~lt~~e~~~~k~~i~~~l 169 (270)
T 3sop_A 151 DTMTLEEKSEFKQRVRKEL 169 (270)
T ss_dssp GGSCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 987532 334444555444
No 415
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.27 E-value=7.4e-07 Score=99.93 Aligned_cols=87 Identities=21% Similarity=0.166 Sum_probs=51.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc-------------c
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN-------------K 74 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~-------------~ 74 (1021)
-..|+|+|.+|+|||||+++|....-.. ....+.|+..+...+.+... .
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~------------------~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~ 83 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASA------------------ENFPFCTIDPNESRVPVPDERFDFLCQYHKPASK 83 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------------------------CCSEEEEECCCHHHHHHHHHHCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccc------------------cCCCccccCceeEEEEECCccceeeccccCcccc
Confidence 3569999999999999999996332100 11233455555444444310 0
Q ss_pred CceeEEEEcCCCCCCcHH-------HHHHHhhccCeEEEEEeCCC
Q psy5021 75 FKYMINIIDTPGHVDFTI-------EVERSLRVLDGAVIIICASS 112 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~-------~~~~~l~~~D~~ilvvda~~ 112 (1021)
....+.+|||||+..+.. .+..+++.+|++++|+|+.+
T Consensus 84 ~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 84 IPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 034699999999988665 56788999999999999974
No 416
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.26 E-value=6.9e-07 Score=97.84 Aligned_cols=103 Identities=22% Similarity=0.176 Sum_probs=73.5
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCC-c-HHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-M-PQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEME 792 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~-~-~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~ 792 (1021)
.+.+||| +++|...+..+++++|++|+|+|+++.. . .....++..+...++| +++|+||+|+.+... . ++
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~p-iilv~NK~DL~~~~~-v----~~ 135 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELE-TVMVINKMDLYDEDD-L----RK 135 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCE-EEEEECCGGGCCHHH-H----HH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEeHHHcCCchh-H----HH
Confidence 7899999 9998887888899999999999999764 2 3334455556666888 889999999976322 1 22
Q ss_pred HHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhh
Q psy5021 793 IRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLD 839 (1021)
Q Consensus 793 ~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~ 839 (1021)
..++++.++. . .+++++||++|. |++++++.+.
T Consensus 136 ~~~~~~~~~~--~-~~~~~~SAktg~-----------gv~~lf~~l~ 168 (301)
T 1u0l_A 136 VRELEEIYSG--L-YPIVKTSAKTGM-----------GIEELKEYLK 168 (301)
T ss_dssp HHHHHHHHTT--T-SCEEECCTTTCT-----------THHHHHHHHS
T ss_pred HHHHHHHHhh--h-CcEEEEECCCCc-----------CHHHHHHHhc
Confidence 3333333321 1 468999999884 7777777664
No 417
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.22 E-value=1.3e-06 Score=96.01 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=62.4
Q ss_pred hCceeeeeeeEEEeecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCC---------CC--chhHHHHHHHH
Q psy5021 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASS---------GI--QPQTETVWFQS 125 (1021)
Q Consensus 57 rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~---------g~--~~~t~~~~~~~ 125 (1021)
+..|+......+.++ +..+.+|||+|+..|...+..+++.++++|+|+|.++ .. .......|..+
T Consensus 145 ~~~TiGi~~~~~~~~----~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i 220 (340)
T 4fid_A 145 RTKTTGIHEYDFVVK----DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI 220 (340)
T ss_dssp CCCCCSCEEEEEESS----SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred ccceeeeEEEEEEee----eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence 445666555666666 7899999999999999999999999999999999972 11 12233444444
Q ss_pred hh----cCCCEEEEEeCcCCC
Q psy5021 126 QK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 126 ~~----~~~p~iiviNK~D~~ 142 (1021)
.. .++|+++|+||+|+.
T Consensus 221 ~~~~~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 221 MTNEFLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp HHCGGGTTSEEEEEEECHHHH
T ss_pred hhhhccCCCeEEEEEECchhh
Confidence 32 578999999999974
No 418
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.22 E-value=6.7e-07 Score=103.86 Aligned_cols=127 Identities=22% Similarity=0.204 Sum_probs=68.7
Q ss_pred cceeeeeeeeeccchhhhhhhccc------ccccccc-ccccccccCC-chhhhhcCceEeeeE-------------EEE
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKV------SSEIYGG-EVRAFDTIDN-APEEKERGITISTSH-------------VEY 709 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~------~~~~~~~-~~~~~~~~d~-~~~e~~~G~Ti~~~~-------------~~~ 709 (1021)
...+.++|++|+||||++++|... ...+... ..+.. ..+. .......++.+.... ..+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~a-a~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAG-AFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSH-HHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchh-HHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 356778899999999999999832 2111111 00000 0000 011122333322110 001
Q ss_pred eeCCeEEEEEecCChhh----hHHHHHHH--hhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 710 ESENKHYAHVDCPGHAD----YIKNMITG--AAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 710 ~~~~~~i~liDtpG~~~----~~~~~~~~--~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
.+.+..+.||||||... +...+... +..+|.+++|+||..+.. ....+...... +|-.+||+||+|...
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHA 254 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCC
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCcccc
Confidence 22677899999999653 33333222 237899999999998753 23333333222 451267889999864
No 419
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.18 E-value=2.5e-06 Score=95.03 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=50.6
Q ss_pred CeEEEEEecCChhhhHHHHHHHhhhCCEEEEEEECC----------CC-CcHHHHHHHHHHHH----cCCCeEEEEEeec
Q psy5021 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAV----------DG-PMPQTREHILLARQ----VGVPNIVVFLNKA 777 (1021)
Q Consensus 713 ~~~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~----------~g-~~~qt~e~l~~~~~----~~ip~iIvviNK~ 777 (1021)
...+.+|||+|+++|.+.+..+++.+|++|+|+|.+ +. -+.....++..+.. .++| +|+++||+
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiLvgNK~ 260 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFLNKF 260 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE-EEEEEECH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe-EEEEEECc
Confidence 467899999999999999999999999999999986 11 12333444444433 2566 99999999
Q ss_pred cccc
Q psy5021 778 DCVQ 781 (1021)
Q Consensus 778 Dl~~ 781 (1021)
|+.+
T Consensus 261 DL~~ 264 (354)
T 2xtz_A 261 DIFE 264 (354)
T ss_dssp HHHH
T ss_pred chhh
Confidence 9853
No 420
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.17 E-value=2.5e-06 Score=93.59 Aligned_cols=82 Identities=11% Similarity=0.141 Sum_probs=61.3
Q ss_pred hCceeeeeeeEEEeecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCC-------CCC----chhHHHHHHHH
Q psy5021 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICAS-------SGI----QPQTETVWFQS 125 (1021)
Q Consensus 57 rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~-------~g~----~~~t~~~~~~~ 125 (1021)
|..|+......+.++ +..+.+|||+|+..|...+..+++.++++|+|+|.+ +.- .......|+..
T Consensus 151 r~~TiGi~~~~~~~~----~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i 226 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQ----SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI 226 (327)
T ss_dssp CCCCCSEEEEEEEET----TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred cCceeeEEEEEEEee----ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHH
Confidence 445555555566666 789999999999999999999999999999999776 211 11233444444
Q ss_pred hh----cCCCEEEEEeCcCCC
Q psy5021 126 QK----YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 126 ~~----~~~p~iiviNK~D~~ 142 (1021)
.. .++|+++|+||+|+.
T Consensus 227 ~~~~~~~~~~iiL~~NK~DL~ 247 (327)
T 3ohm_A 227 ITYPWFQNSSVILFLNKKDLL 247 (327)
T ss_dssp HTSGGGTTCEEEEEEECHHHH
T ss_pred hhhhccCCceEEEEEECchhh
Confidence 32 479999999999974
No 421
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=98.14 E-value=2.8e-06 Score=86.91 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=70.3
Q ss_pred CCCceEEEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceeeEeceEEEeecCCeeccccccCCCEEEE--ecCC-
Q psy5021 294 NSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK- 370 (1021)
Q Consensus 294 ~~~p~~~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~- 370 (1021)
.++||.+.|..++. +.|++..|||.+|++++||.|...+.+.+.+|++|+.. ..++++|.|||.+++ .|++
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~----~~~~~~A~aGd~V~l~L~gi~~ 76 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSD----DVETDTVAPGENLKIRLKGIEE 76 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSS----SSCBSEECTTSEEEEEEEESSS
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEEC----CEEeEEECCCCEEEEEEcCCCH
Confidence 36799999999876 57999999999999999999999988888899988543 367999999999999 7775
Q ss_pred -ccccCCeeccCCcc
Q psy5021 371 -ESSTGDTLCSLSEN 384 (1021)
Q Consensus 371 -~~~~gdtl~~~~~~ 384 (1021)
++..||+|++++.+
T Consensus 77 ~di~rG~vl~~~~~~ 91 (204)
T 3e1y_E 77 EEILPGFILCDPNNL 91 (204)
T ss_dssp SCCCTTCEEBCSSSC
T ss_pred HHCccceEEECCCCC
Confidence 58999999987643
No 422
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.10 E-value=1.1e-06 Score=98.85 Aligned_cols=79 Identities=14% Similarity=0.184 Sum_probs=59.2
Q ss_pred eeeeeeeEEEeecccCceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCC----------CCc-hhHHHHHHHHhh-
Q psy5021 60 TITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASS----------GIQ-PQTETVWFQSQK- 127 (1021)
Q Consensus 60 Ti~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~----------g~~-~~t~~~~~~~~~- 127 (1021)
|+......+.+. +..+.+|||+|+..|...+..+++.++++|+|+|.++ .-. ......|..+..
T Consensus 204 TiGi~~~~~~~~----~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 204 TSGIFETKFQVD----KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCSEEEEEEEET----TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred eeeeEEEEeecC----CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 444444455555 7899999999999999999999999999999999987 211 123334444432
Q ss_pred ---cCCCEEEEEeCcCCC
Q psy5021 128 ---YKVPKMIFVNKMDRI 142 (1021)
Q Consensus 128 ---~~~p~iiviNK~D~~ 142 (1021)
.++|+++|+||+|+.
T Consensus 280 ~~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 280 RWLRTISVILFLNKQDLL 297 (402)
T ss_dssp TTCSSCCEEEEEECHHHH
T ss_pred ccCCCCeEEEEEEChhhh
Confidence 468999999999973
No 423
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.08 E-value=7.4e-05 Score=84.89 Aligned_cols=150 Identities=14% Similarity=0.024 Sum_probs=75.6
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHc---CCCcccccccCC--cccccChHHHhhhCceeeeeeeEEE--------e-ec
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYS---GSSHKIGEVHHG--TTITDWMQQEQERGITITSASVSIF--------W-EV 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~---~~~~~~g~~~~~--~~~~d~~~~e~~rgiTi~~~~~~~~--------~-~~ 72 (1021)
+.+.|+++|..|+||||++..|.... |.-...-..+.. ..+..........|+.+........ . ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999997432 111000000000 0000000111222333221100000 0 00
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHH------HhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCH
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVER------SLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANY 146 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~------~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~ 146 (1021)
...++.+.||||||.......... ....+|.+++|+||..|... ....+.....--+..+++||+|... ..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a--~~~a~~f~~~~~i~gVIlTKlD~~~-~g 255 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA--YNQALAFKEATPIGSIIVTKLDGSA-KG 255 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH--HHHHHHHHHSCTTEEEEEECCSSCS-SH
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH--HHHHHHHHhhCCCeEEEEECCCCcc-cc
Confidence 113578999999996544332222 23357999999999986432 2233333333345568899999853 22
Q ss_pred HHHHHHHHHHhCCc
Q psy5021 147 NNCIIDIKKKFNCI 160 (1021)
Q Consensus 147 ~~~~~~i~~~l~~~ 160 (1021)
. ...++....+.+
T Consensus 256 G-~~ls~~~~~g~P 268 (443)
T 3dm5_A 256 G-GALSAVAATGAP 268 (443)
T ss_dssp H-HHHHHHHTTCCC
T ss_pred c-HHHHHHHHHCCC
Confidence 2 233444445543
No 424
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.08 E-value=1.1e-05 Score=86.70 Aligned_cols=143 Identities=18% Similarity=0.188 Sum_probs=80.1
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCCeEEEEEecCChhh----
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD---- 726 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~~~i~liDtpG~~~---- 726 (1021)
.++.|++|.+|+|||||+|.|++...... +...... .+.......++++.-... ..-...++++|+||...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~-G~i~~~g-~~i~~~~~~~~i~~v~q~---~~~~~~ltv~d~~~~g~~~~~ 76 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRK-ASSWNRE-EKIPKTVEIKAIGHVIEE---GGVKMKLTVIDTPGFGDQINN 76 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC-------CCEEEEECCCC--CCSBC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCC-CccccCC-cccCcceeeeeeEEEeec---CCCcCCceEEechhhhhhccc
Confidence 36789999999999999999997532211 1110000 000000011111111110 01123679999999532
Q ss_pred ---------hHH-----HHHHHh----------hhCCEEEEEEECC-CCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 727 ---------YIK-----NMITGA----------AQMDGAILVCSAV-DGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 727 ---------~~~-----~~~~~~----------~~aD~ailVvDa~-~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
++. .....+ ..++++++++|.. +|..+...+.+..+... ++ +|+++||+|...
T Consensus 77 ~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~-vI~Vi~K~D~lt 154 (270)
T 3sop_A 77 ENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VN-IIPVIAKADTMT 154 (270)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SE-EEEEETTGGGSC
T ss_pred HHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-Cc-EEEEEeccccCC
Confidence 111 111111 2368999999954 78888888888877766 66 999999999887
Q ss_pred hhhHHHHHHHHHHHhhhccc
Q psy5021 782 DKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 782 ~~~~~~~~~~~~~~~l~~~~ 801 (1021)
..+ ....+..+.+.++..+
T Consensus 155 ~~e-~~~~k~~i~~~l~~~~ 173 (270)
T 3sop_A 155 LEE-KSEFKQRVRKELEVNG 173 (270)
T ss_dssp HHH-HHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHHcC
Confidence 433 4445566666555554
No 425
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.07 E-value=3.2e-06 Score=92.50 Aligned_cols=63 Identities=11% Similarity=0.137 Sum_probs=51.3
Q ss_pred eEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCC-chhH-HHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 78 MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQT-ETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 78 ~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t-~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
.+.+||| +..|...+..+++.+|++|+|+|+++.. .... ...+..+...++|+++|+||+|+.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 7899999 9999888889999999999999999764 3333 333344556789999999999985
No 426
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.06 E-value=3e-06 Score=88.56 Aligned_cols=101 Identities=13% Similarity=0.141 Sum_probs=58.6
Q ss_pred EEEEEecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchh-hHHHHHHHHH
Q psy5021 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDK-ELLDLVEMEI 793 (1021)
Q Consensus 715 ~i~liDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~-~~~~~~~~~~ 793 (1021)
.+.++|++|.-.- .. ..-...+..+.|+|+..+..... . .....+.| .++|+||+|+.+.. ...+. +
T Consensus 120 d~~~id~~g~i~~-~~--s~~~~~~~~~~v~~~~~~~~~~~-~---~~~~~~~~-~iiv~NK~Dl~~~~~~~~~~----~ 187 (226)
T 2hf9_A 120 DLLFIENVGNLIC-PA--DFDLGTHKRIVVISTTEGDDTIE-K---HPGIMKTA-DLIVINKIDLADAVGADIKK----M 187 (226)
T ss_dssp SEEEEECCSCSSG-GG--GCCCSCSEEEEEEEGGGCTTTTT-T---CHHHHTTC-SEEEEECGGGHHHHTCCHHH----H
T ss_pred CEEEEeCCCCccC-cc--hhhhccCcEEEEEecCcchhhHh-h---hhhHhhcC-CEEEEeccccCchhHHHHHH----H
Confidence 6888999993111 00 01124577888899754332111 0 11224677 77889999986521 11222 3
Q ss_pred HHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 794 RELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 794 ~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
...++.++ ...+++++||++| .+++++++.|.+.
T Consensus 188 ~~~~~~~~---~~~~~~~~Sa~~g-----------~gv~~l~~~l~~~ 221 (226)
T 2hf9_A 188 ENDAKRIN---PDAEVVLLSLKTM-----------EGFDKVLEFIEKS 221 (226)
T ss_dssp HHHHHHHC---TTSEEEECCTTTC-----------TTHHHHHHHHHHH
T ss_pred HHHHHHhC---CCCeEEEEEecCC-----------CCHHHHHHHHHHH
Confidence 33333322 1358999999987 3889999888653
No 427
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.05 E-value=8.4e-06 Score=91.66 Aligned_cols=89 Identities=15% Similarity=0.105 Sum_probs=59.8
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeecc----------c--
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVN----------K-- 74 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~----------~-- 74 (1021)
+-..++|+|++|+|||||+++|.....+... ...+.|+..+...+.+... .
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~-----------------~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~ 81 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPA-----------------NYPYATIDPEEAKVAVPDERFDWLCEAYKPKS 81 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTT-----------------CCSSCCCCTTEEEEEECCHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccc-----------------CCCceeecceeeeeeeCCcchhhhhhhccccc
Confidence 3458999999999999999999753321111 1123344444444444310 0
Q ss_pred -CceeEEEEcCCCCCC-------cHHHHHHHhhccCeEEEEEeCCC
Q psy5021 75 -FKYMINIIDTPGHVD-------FTIEVERSLRVLDGAVIIICASS 112 (1021)
Q Consensus 75 -~~~~i~liDtPG~~~-------f~~~~~~~l~~~D~~ilvvda~~ 112 (1021)
-...+.++||||... +.......++.+|+++.|+|+.+
T Consensus 82 ~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 82 RVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 024689999999654 45577888899999999999975
No 428
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.03 E-value=1.1e-05 Score=80.86 Aligned_cols=59 Identities=8% Similarity=0.150 Sum_probs=38.2
Q ss_pred CCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHH----HHHh----hcCCCEEEEEeCc-CCCCC
Q psy5021 86 GHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVW----FQSQ----KYKVPKMIFVNKM-DRIGA 144 (1021)
Q Consensus 86 G~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~----~~~~----~~~~p~iiviNK~-D~~~~ 144 (1021)
|+..+...|..++..+|++|+|||+++.-......-+ +.+. ..++|++|+.||. |++++
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A 178 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 178 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC
Confidence 7888888999999999999999999875222233222 2221 1578999999995 77654
No 429
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.02 E-value=5.6e-06 Score=92.12 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=51.0
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCC---------CC--chhHHHHHHHHhh----cCCCEEEEEeCc
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASS---------GI--QPQTETVWFQSQK----YKVPKMIFVNKM 139 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~---------g~--~~~t~~~~~~~~~----~~~p~iiviNK~ 139 (1021)
....+.+|||+|+..|...+..+++.++++|+|+|.++ .. .......|+.... .++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 36889999999999999999999999999999999871 11 1223334444432 479999999999
Q ss_pred CCC
Q psy5021 140 DRI 142 (1021)
Q Consensus 140 D~~ 142 (1021)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 973
No 430
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.93 E-value=3.6e-05 Score=77.26 Aligned_cols=105 Identities=12% Similarity=0.039 Sum_probs=64.8
Q ss_pred cCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHH----HHH-H---cCCCeEEEEEeec-cccchhhHHHHHHH
Q psy5021 721 CPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHIL----LAR-Q---VGVPNIVVFLNKA-DCVQDKELLDLVEM 791 (1021)
Q Consensus 721 tpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~----~~~-~---~~ip~iIvviNK~-Dl~~~~~~~~~~~~ 791 (1021)
..|+.++...|..|+.++|++|+|||+++......++-+. ++. . .++| ++|+.||. |+.+.-. ..
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gap-LLVlANKqqDlp~Ams-~~---- 182 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRMP-CF---- 182 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSC-EEEEEEESSTTSCBCC-HH----
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCe-EEEEeCCCcCccCCCC-HH----
Confidence 4489999999999999999999999998764333444331 121 1 3678 88899996 6754211 12
Q ss_pred HHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 792 EIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 792 ~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++.+.|..-... ....+.+|||++| +|+.+-+++|.+.+.
T Consensus 183 EI~e~L~L~~l~-R~W~Iq~csA~TG-----------eGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 183 YLAHELHLNLLN-HPWLVQDTEAETL-----------TGFLNGIEWILEEVE 222 (227)
T ss_dssp HHHHHTTGGGGC-SCEEEEEEETTTC-----------TTHHHHHHHHTTTTT
T ss_pred HHHHHcCCcCCC-CCEEEEEeECCCC-----------cCHHHHHHHHHHHHH
Confidence 233333222222 4678999999988 488999999987653
No 431
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.89 E-value=4.2e-05 Score=78.41 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=86.9
Q ss_pred EEEEEE-eCCCCCHHHHHHHHHHH---cCCCcccccccCCcccccChHHHhhhCceeeeeee-EE--EeecccCceeEEE
Q psy5021 9 RNIGII-AHVDAGKTTTTERILFY---SGSSHKIGEVHHGTTITDWMQQEQERGITITSASV-SI--FWEVNKFKYMINI 81 (1021)
Q Consensus 9 rni~ii-G~~~~GKTTL~~~Ll~~---~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~-~~--~~~~~~~~~~i~l 81 (1021)
+.|+|. +..|+||||++-.|... .|.-.-.-+.+.+....+|.... ..+..+-.... .+ .+..-...|.+.+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~yD~vi 80 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAG-KAAFDVFTAASEKDVYGIRKDLADYDFAI 80 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTS-CCSSEEEECCSHHHHHTHHHHTTTSSEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcC-CCCCcEEecCcHHHHHHHHHhcCCCCEEE
Confidence 567777 67889999999988632 23211111223333333332211 11111111000 00 0000023588999
Q ss_pred EcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhc-----CCCEEEEEeCcCCCCCCHHHHHHHHHHH
Q psy5021 82 IDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY-----KVPKMIFVNKMDRIGANYNNCIIDIKKK 156 (1021)
Q Consensus 82 iDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~-----~~p~iiviNK~D~~~~~~~~~~~~i~~~ 156 (1021)
||||+.. ...+..++..+|.+|+++.+.... ..+...++.+... ++++.+++|++|.......+..+.+++
T Consensus 81 iD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~~~~l~~- 156 (206)
T 4dzz_A 81 VDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVLKESIKD- 156 (206)
T ss_dssp EECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHHHHHHHH-
T ss_pred EECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHHHHHHHH-
Confidence 9999987 467788899999999999998877 7777887777654 467888999999643333444444433
Q ss_pred hCCce
Q psy5021 157 FNCIV 161 (1021)
Q Consensus 157 l~~~~ 161 (1021)
++.+.
T Consensus 157 ~~~~v 161 (206)
T 4dzz_A 157 TGVKA 161 (206)
T ss_dssp HTCCB
T ss_pred cCCce
Confidence 55443
No 432
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.87 E-value=8.7e-05 Score=84.00 Aligned_cols=166 Identities=17% Similarity=0.110 Sum_probs=93.1
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEEeeCC-eEEEEEecCChhh---h
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN-KHYAHVDCPGHAD---Y 727 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~-~~i~liDtpG~~~---~ 727 (1021)
...|++|.+|+|||||+|.|++.... ..+... .+.....+ .+ ..+.... ..++++|+||... -
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p-~~GsI~----~~g~~~t~-~~-------~v~q~~~~~~ltv~D~~g~~~~~~~ 136 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNE-EEGAAK----TGVVEVTM-ER-------HPYKHPNIPNVVFWDLPGIGSTNFP 136 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTT-STTSCC----CCC----C-CC-------EEEECSSCTTEEEEECCCGGGSSCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCc-cCceEE----ECCeecce-eE-------EeccccccCCeeehHhhcccchHHH
Confidence 46689999999999999999984321 111111 11111100 11 1122222 3689999999532 1
Q ss_pred HHHHHHH--hhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-h-------hhHHHHHHHHHHHhh
Q psy5021 728 IKNMITG--AAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ-D-------KELLDLVEMEIRELL 797 (1021)
Q Consensus 728 ~~~~~~~--~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~-~-------~~~~~~~~~~~~~~l 797 (1021)
....+.. +...|..++ +|... .+.|....+..+...+.| +++|+||.|+.- + ....+.+.+.+.++.
T Consensus 137 ~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p-~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 137 PDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKE-FYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp HHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCE-EEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCC-eEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 2233332 344566655 77754 356666666777777887 899999999751 1 111223333444432
Q ss_pred ----hccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCCC
Q psy5021 798 ----TEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPT 844 (1021)
Q Consensus 798 ----~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~~ 844 (1021)
+..|.. ...++++|+..- ..++++.|.+.+.+.+|.
T Consensus 214 ~~~l~~~g~~--~~~iiliSsh~l---------~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 214 VNTFRENGIA--EPPIFLLSNKNV---------CHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHHHHTTCS--SCCEEECCTTCT---------TSTTHHHHHHHHHHHSCG
T ss_pred HHHHHhcCCC--CCcEEEEecCcC---------CccCHHHHHHHHHHhCcc
Confidence 222221 235788999532 113688899988877754
No 433
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.86 E-value=1.6e-05 Score=85.95 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=43.9
Q ss_pred EcCCCCC-CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 82 IDTPGHV-DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 82 iDtPG~~-~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
=+.|||. ....++...+..+|+++.|+||.++.......+-+.+ .++|+++++||+|+..
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD 64 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC
Confidence 3579996 6678899999999999999999988766533333333 5899999999999863
No 434
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.84 E-value=1.4e-05 Score=89.77 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=57.9
Q ss_pred cceeeeeeeeeccchhhhhhhccccc-cccccccccccccCCchhhhhcCceEeeeEEEEeeCC----------------
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSS-EIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN---------------- 713 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~-~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~~~~~---------------- 713 (1021)
....|++|.+|+|||||+|+|++... ...+ ..++|++.....+...+
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~----------------~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v 83 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPAN----------------YPYATIDPEEAKVAVPDERFDWLCEAYKPKSRV 83 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTC----------------CSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccC----------------CCceeecceeeeeeeCCcchhhhhhhccccccc
Confidence 56899999999999999999998542 1111 12334444433333332
Q ss_pred -eEEEEEecCChhh-------hHHHHHHHhhhCCEEEEEEECCC
Q psy5021 714 -KHYAHVDCPGHAD-------YIKNMITGAAQMDGAILVCSAVD 749 (1021)
Q Consensus 714 -~~i~liDtpG~~~-------~~~~~~~~~~~aD~ailVvDa~~ 749 (1021)
..+.+||+||... +.......++.+|.+++|+|+.+
T Consensus 84 ~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 84 PAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4678999999543 34456777899999999999875
No 435
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.83 E-value=3.7e-05 Score=83.04 Aligned_cols=100 Identities=12% Similarity=0.076 Sum_probs=61.9
Q ss_pred EEecCChh-hhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHh
Q psy5021 718 HVDCPGHA-DYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIREL 796 (1021)
Q Consensus 718 liDtpG~~-~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~ 796 (1021)
+-+.|||. +..+.+...+.++|++++|+||+++......+.-.++ .++| .++|+||+|+.+.. .. +...++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp-~ilVlNK~DL~~~~-~~----~~~~~~ 74 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKP-RIMLLNKADKADAA-VT----QQWKEH 74 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSC-EEEEEECGGGSCHH-HH----HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCC-EEEEEECcccCCHH-HH----HHHHHH
Confidence 44689997 5677788889999999999999987654322211221 3566 88899999998622 11 223334
Q ss_pred hhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 797 LTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 797 l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
++..+ .+++++||.++. ++.+|++.+.+.
T Consensus 75 ~~~~g-----~~~i~iSA~~~~-----------gi~~L~~~i~~~ 103 (282)
T 1puj_A 75 FENQG-----IRSLSINSVNGQ-----------GLNQIVPASKEI 103 (282)
T ss_dssp HHTTT-----CCEEECCTTTCT-----------TGGGHHHHHHHH
T ss_pred HHhcC-----CcEEEEECCCcc-----------cHHHHHHHHHHH
Confidence 44333 368899999763 566666655543
No 436
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.79 E-value=2.9e-05 Score=84.34 Aligned_cols=148 Identities=18% Similarity=0.124 Sum_probs=79.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHc---CCCcccccccCC-cccccCh-HHHhhhCceeeeeee-----EEEeec----c
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYS---GSSHKIGEVHHG-TTITDWM-QQEQERGITITSASV-----SIFWEV----N 73 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~---~~~~~~g~~~~~-~~~~d~~-~~e~~rgiTi~~~~~-----~~~~~~----~ 73 (1021)
.+.|+++|+.|+||||++..|.... +.-....+.+.. ....+.. ......|+.+..... .+.... .
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999987432 211111111110 0000000 011123444332210 000000 1
Q ss_pred cCceeEEEEcCCCCCC--cHHHHH------HHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCC
Q psy5021 74 KFKYMINIIDTPGHVD--FTIEVE------RSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGA 144 (1021)
Q Consensus 74 ~~~~~i~liDtPG~~~--f~~~~~------~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~ 144 (1021)
..++.+.+|||||... ...... ..+..+|.+++|+|+..+ .......+.... .+| ..+++||+|.. .
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~-~ 253 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT-A 253 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC-T
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC-c
Confidence 1378899999999877 433332 345578999999999865 223333333332 477 67789999975 3
Q ss_pred CHHHHHHHHHHHhCCc
Q psy5021 145 NYNNCIIDIKKKFNCI 160 (1021)
Q Consensus 145 ~~~~~~~~i~~~l~~~ 160 (1021)
... ...++...++.+
T Consensus 254 ~~g-~~~~~~~~~~~p 268 (297)
T 1j8m_F 254 KGG-GALSAVAATGAT 268 (297)
T ss_dssp THH-HHHHHHHTTTCC
T ss_pred chH-HHHHHHHHHCcC
Confidence 333 333455555543
No 437
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.73 E-value=4e-05 Score=66.59 Aligned_cols=81 Identities=15% Similarity=0.360 Sum_probs=71.7
Q ss_pred eEEEEEEEeeCCceeEEEEEEEEEEeeCCCEEEEeecCC-eeEEEEEEEEecccccceeccCceEEEEecccCccCcccc
Q psy5021 854 LMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQ-TIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERG 932 (1021)
Q Consensus 854 ~~~I~~~~~v~g~G~Vv~G~V~~G~l~~gd~v~i~p~~~-~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~~i~~G 932 (1021)
...|.++|+++..|+|+..+|.+|.++.+..+.+.-.+. -...++.|+..+++++.++.+|..||+.+.+ ..|++.|
T Consensus 8 ~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~--~~dik~G 85 (99)
T 1d1n_A 8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKN--FNDIKEG 85 (99)
T ss_dssp EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTT--CSSCSSC
T ss_pred EEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcC--cCCCCCC
Confidence 456788999999999999999999999999999985554 3467899999999999999999999999987 5589999
Q ss_pred eEEe
Q psy5021 933 QVLA 936 (1021)
Q Consensus 933 ~vl~ 936 (1021)
|+|-
T Consensus 86 D~Ie 89 (99)
T 1d1n_A 86 DVIE 89 (99)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9984
No 438
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.69 E-value=3e-05 Score=84.71 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=42.3
Q ss_pred CCCcHHHHHHHhhccCeEEEEEeCCCCC-chhH-HHHHHHHhhcCCCEEEEEeCcCCC
Q psy5021 87 HVDFTIEVERSLRVLDGAVIIICASSGI-QPQT-ETVWFQSQKYKVPKMIFVNKMDRI 142 (1021)
Q Consensus 87 ~~~f~~~~~~~l~~~D~~ilvvda~~g~-~~~t-~~~~~~~~~~~~p~iiviNK~D~~ 142 (1021)
+..|......+++.+|++++|+|+++.. .... ...+..+...++|+++|+||+|+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLL 123 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCC
Confidence 4555555556899999999999999764 4433 344455667899999999999985
No 439
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.67 E-value=5.8e-05 Score=84.85 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=66.9
Q ss_pred EecCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhh
Q psy5021 719 VDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLT 798 (1021)
Q Consensus 719 iDtpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~ 798 (1021)
++++ +++|.+........+|++++|+|+++.......+....+ .+.| +++|+||+|+.+.+...+.+.+.+..+++
T Consensus 54 v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~p-iilV~NK~DLl~~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 54 VPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNP-ILLVGNKADLLPRSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp ------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSC-EEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred CcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCC-EEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence 4444 788988888888999999999999985432111111111 2566 88999999998643223444455566666
Q ss_pred ccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 799 EYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 799 ~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
..|+.. ..++++||++|. ++++|++.+.+
T Consensus 130 ~~g~~~--~~v~~iSA~~g~-----------gi~~L~~~I~~ 158 (369)
T 3ec1_A 130 ELGLCP--VDVCLVSAAKGI-----------GMAKVMEAINR 158 (369)
T ss_dssp TTTCCC--SEEEECBTTTTB-----------THHHHHHHHHH
T ss_pred HcCCCc--ccEEEEECCCCC-----------CHHHHHHHHHh
Confidence 666531 368899999874 66666666654
No 440
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.66 E-value=0.00012 Score=77.15 Aligned_cols=61 Identities=8% Similarity=0.122 Sum_probs=42.8
Q ss_pred CCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHH----HHHHH---h-hcCCCEEEEEeC-cCCCCC
Q psy5021 84 TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET----VWFQS---Q-KYKVPKMIFVNK-MDRIGA 144 (1021)
Q Consensus 84 tPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~----~~~~~---~-~~~~p~iiviNK-~D~~~~ 144 (1021)
..|+..+...+..++..+|++|+|||+++.-.....+ +...+ . ..+.|++|+.|| -|++++
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A 263 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 263 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence 3588999999999999999999999998753211222 11222 2 268999999997 588765
No 441
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.63 E-value=0.00013 Score=79.76 Aligned_cols=87 Identities=14% Similarity=0.038 Sum_probs=57.1
Q ss_pred hhhhHHHHHHHhhhCCEEEEEEECCCCC-cH-HHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccc
Q psy5021 724 HADYIKNMITGAAQMDGAILVCSAVDGP-MP-QTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801 (1021)
Q Consensus 724 ~~~~~~~~~~~~~~aD~ailVvDa~~g~-~~-qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 801 (1021)
+++|......+++++|.+++|+|++++. .. ....++..+...++| +|+|+||+|+.++.+ .+. .++..++.+..+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~-~ilV~NK~DL~~~~~-v~~-~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVE-PVIVFNKIDLLNEEE-KKE-LERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCE-EEEEECCGGGCCHHH-HHH-HHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCC-EEEEEEcccCCCccc-cHH-HHHHHHHHHHCC
Confidence 4444333334689999999999999764 33 334566666777888 788999999986321 111 233344444444
Q ss_pred cCCCceEEEEecccccc
Q psy5021 802 FDGENTKIVIGSALLAL 818 (1021)
Q Consensus 802 ~~~~~~~ii~iSa~~~~ 818 (1021)
.+++++||++|.
T Consensus 143 -----~~~~~~SA~~g~ 154 (302)
T 2yv5_A 143 -----YDVLKVSAKTGE 154 (302)
T ss_dssp -----CEEEECCTTTCT
T ss_pred -----CeEEEEECCCCC
Confidence 478999999873
No 442
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.63 E-value=4.6e-05 Score=89.89 Aligned_cols=104 Identities=16% Similarity=0.127 Sum_probs=62.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHHHhhhCceeeeeeeEEEeec---ccCceeEEEE
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEV---NKFKYMINII 82 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~---~~~~~~i~li 82 (1021)
.+...|+|+|.+|+|||||+|+|+.....+...+ +. ++.|.. ...|.. ...+..+.|+
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~------tt---------~~~T~g----i~~~~~~~~~~~~~~i~Li 96 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGS------TV---------QSHTKG----IWMWCVPHPKKPGHILVLL 96 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCC------SS---------SCCCCS----EEEEEEECSSSTTCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCC------CC---------CCceeE----EEEeecccccCCCceEEEe
Confidence 3567899999999999999999975432221111 10 011111 112210 1235789999
Q ss_pred cCCCCCCcHH------HHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhc
Q psy5021 83 DTPGHVDFTI------EVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128 (1021)
Q Consensus 83 DtPG~~~f~~------~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~ 128 (1021)
||||..+... ....++...-..++|+|+..++..+...++..+...
T Consensus 97 DTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~ 148 (592)
T 1f5n_A 97 DTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTEL 148 (592)
T ss_dssp EECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTH
T ss_pred cCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHH
Confidence 9999865322 122223332233788899888988888777766443
No 443
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.62 E-value=5.7e-05 Score=84.86 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=66.1
Q ss_pred ChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH-c-CCCeEEEEEeeccccchhhHHHHHHHHHHHhhhcc
Q psy5021 723 GHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQ-V-GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800 (1021)
Q Consensus 723 G~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~-~-~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 800 (1021)
-.++|.+.+....+.+|++++|+|+++.. ..+...+.. . +.| +++|+||+|+.+.....+.+.+.+..+++..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~----~~~~~~l~~~~~~~p-~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN----GSWLPGLHRFVGNNK-VLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH----HHCCTTHHHHSSSSC-EEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc----ccHHHHHHHHhCCCc-EEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence 45788888888888899999999998721 112122222 2 567 8899999999763322334444555556666
Q ss_pred ccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhc
Q psy5021 801 DFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDS 840 (1021)
Q Consensus 801 ~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~ 840 (1021)
|+. ..+++.+||++|. |+++|++.|.+
T Consensus 130 g~~--~~~v~~iSA~~g~-----------gi~~L~~~l~~ 156 (368)
T 3h2y_A 130 GLK--PEDVFLISAAKGQ-----------GIAELADAIEY 156 (368)
T ss_dssp TCC--CSEEEECCTTTCT-----------THHHHHHHHHH
T ss_pred CCC--cccEEEEeCCCCc-----------CHHHHHhhhhh
Confidence 653 1368899999873 67777777654
No 444
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.60 E-value=0.00017 Score=64.99 Aligned_cols=81 Identities=16% Similarity=0.311 Sum_probs=71.4
Q ss_pred eEEEEEEEeeCCcee---EEEEEEEEEEeeCCCEEEEeecCC-eeEEEEEEEEecccccceeccCceEEEEecccCcc-C
Q psy5021 854 LMPIEDVFSISGRGT---VVTGKIERGIVKNGEEIEIVGYKQ-TIKTTITGIEMFKKTLDEGLAGENVGILLRSVKRE-E 928 (1021)
Q Consensus 854 ~~~I~~~~~v~g~G~---Vv~G~V~~G~l~~gd~v~i~p~~~-~~~~~Vksi~~~~~~~~~a~~G~~v~l~l~~~~~~-~ 928 (1021)
+..|.++|+++..|+ |+..+|..|.|+.+..+.+.-.+. -...++.|+..+++++.++.+|..||+.|.+ .. |
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~--fniD 89 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDE--EKVE 89 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSC--TTSC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEcc--CCCC
Confidence 677899999998887 999999999999999999985443 3356899999999999999999999999986 56 8
Q ss_pred cccceEEe
Q psy5021 929 VERGQVLA 936 (1021)
Q Consensus 929 i~~G~vl~ 936 (1021)
++.||+|-
T Consensus 90 ik~GDiIE 97 (120)
T 2crv_A 90 FKPGDQVI 97 (120)
T ss_dssp CCTTEEEE
T ss_pred CCCCCEEE
Confidence 99999994
No 445
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.46 E-value=0.00022 Score=75.23 Aligned_cols=105 Identities=12% Similarity=0.026 Sum_probs=68.7
Q ss_pred cCChhhhHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHH----HHH---HH-cCCCeEEEEEee-ccccchhhHHHHHHH
Q psy5021 721 CPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHI----LLA---RQ-VGVPNIVVFLNK-ADCVQDKELLDLVEM 791 (1021)
Q Consensus 721 tpG~~~~~~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l----~~~---~~-~~ip~iIvviNK-~Dl~~~~~~~~~~~~ 791 (1021)
..|+.++...+..|+.++|++|+|||+++......++-+ .++ .. .++| ++|+.|| .|+.+.-. ..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~Ams-~~---- 267 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRMP-CF---- 267 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCBCC-HH----
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCCCC-HH----
Confidence 568999999999999999999999999886542233321 222 11 4788 8889997 58765211 12
Q ss_pred HHHHhhhccccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhccCC
Q psy5021 792 EIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIP 843 (1021)
Q Consensus 792 ~~~~~l~~~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~l~ 843 (1021)
++.+.+..-... ....+.++||.+| +|+.+-+++|.+.+.
T Consensus 268 EI~e~L~L~~l~-r~W~Iq~csA~tG-----------eGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 268 YLAHELHLNLLN-HPWLVQDTEAETL-----------TGFLNGIEWILEEVE 307 (312)
T ss_dssp HHHHHTTGGGGC-SCEEEEEEETTTC-----------TTHHHHHHHHHHHSC
T ss_pred HHHHHcCCccCC-CcEEEEecccCCC-----------cCHHHHHHHHHHHHH
Confidence 233333222222 4578999999988 488888888877553
No 446
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.46 E-value=7.4e-05 Score=79.70 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=59.2
Q ss_pred cCChhhhH-HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhc
Q psy5021 721 CPGHADYI-KNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTE 799 (1021)
Q Consensus 721 tpG~~~~~-~~~~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~ 799 (1021)
-|||.... +.+...+.++|++++|+||+++......+ +.++ ++| .++|+||+|+++.. .. ++..++++.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-l~ll---~k~-~iivlNK~DL~~~~-~~----~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-VDFS---RKE-TIILLNKVDIADEK-TT----KKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-SCCT---TSE-EEEEEECGGGSCHH-HH----HHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-HHhc---CCC-cEEEEECccCCCHH-HH----HHHHHHHHH
Confidence 48987654 56778889999999999999876543211 1122 777 78899999998732 11 222334444
Q ss_pred cccCCCceEEEEecccccccCCCCCccCcchHHHHHHhhhcc
Q psy5021 800 YDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLDVLDSS 841 (1021)
Q Consensus 800 ~~~~~~~~~ii~iSa~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 841 (1021)
.|+ ++ ++||.++. +++.|++.+.+.
T Consensus 74 ~g~-----~v-~iSa~~~~-----------gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 QGK-----RV-ITTHKGEP-----------RKVLLKKLSFDR 98 (262)
T ss_dssp TTC-----CE-EECCTTSC-----------HHHHHHHHCCCT
T ss_pred cCC-----eE-EEECCCCc-----------CHHHHHHHHHHh
Confidence 443 45 88999773 788888877653
No 447
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.44 E-value=0.00014 Score=74.93 Aligned_cols=141 Identities=17% Similarity=0.055 Sum_probs=83.0
Q ss_pred EEEE-eCCCCCHHHHHHHHHHH---cCCCcccccccCCcccccChHHHhhhCceeeeeeeEE-EeecccCceeEEEEcCC
Q psy5021 11 IGII-AHVDAGKTTTTERILFY---SGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI-FWEVNKFKYMINIIDTP 85 (1021)
Q Consensus 11 i~ii-G~~~~GKTTL~~~Ll~~---~~~~~~~g~~~~~~~~~d~~~~e~~rgiTi~~~~~~~-~~~~~~~~~~i~liDtP 85 (1021)
|+|. +..|+||||++-.|... .| -.-.-+.+......+|... ..... ..+.- ....-...|.+.+||||
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~---~~l~~--~vi~~~~l~~l~~~yD~viiD~p 76 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKR---GSLPF--KVVDERQAAKYAPKYQNIVIDTQ 76 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHH---SCCSS--EEEEGGGHHHHGGGCSEEEEEEE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcC---CCCCc--ceeCHHHHHHhhhcCCEEEEeCC
Confidence 5554 77899999999988633 22 1111112233233333221 00100 00000 00001236889999999
Q ss_pred CC-CCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh-cCCCEEEEEeCcCCCC-CCHHHHHHHHHHHhCCc
Q psy5021 86 GH-VDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK-YKVPKMIFVNKMDRIG-ANYNNCIIDIKKKFNCI 160 (1021)
Q Consensus 86 G~-~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~-~~~p~iiviNK~D~~~-~~~~~~~~~i~~~l~~~ 160 (1021)
+. ... .+..++..+|.+|+++.+.......+...++.+.. .+.+..+++|+.|... ....+..+.+++ ++..
T Consensus 77 ~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~l~~-~g~~ 151 (209)
T 3cwq_A 77 ARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQLLTT-AGLP 151 (209)
T ss_dssp CCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHHHHHH-TTCC
T ss_pred CCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHHHHHH-cCCc
Confidence 97 553 56678899999999999876555566666776665 3788889999999765 334444555554 6544
No 448
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.38 E-value=8.8e-05 Score=79.12 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=39.1
Q ss_pred CCCCCc-HHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 85 PGHVDF-TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 85 PG~~~f-~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
|||... ..++...+..+|.++.|+||.++.......+ . .. ++|+++++||+|+..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~-ll--~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-D-FS--RKETIILLNKVDIAD 60 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-C-CT--TSEEEEEEECGGGSC
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-H-hc--CCCcEEEEECccCCC
Confidence 899654 4688999999999999999998765543221 1 12 899999999999863
No 449
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.26 E-value=8.1e-05 Score=87.84 Aligned_cols=101 Identities=14% Similarity=0.094 Sum_probs=58.5
Q ss_pred ccceeeeeeeeeccchhhhhhhccccccccccccccccccCCchhhhhcCceEeeeEEEE---eeCCeEEEEEecCChhh
Q psy5021 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEY---ESENKHYAHVDCPGHAD 726 (1021)
Q Consensus 650 ~~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~~~e~~~G~Ti~~~~~~~---~~~~~~i~liDtpG~~~ 726 (1021)
+...++++|.+|+|||||+|+|++...... + .... ++.|.....+.. ...+..+.|+||||..+
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~--------~-~~tt----~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFS--------L-GSTV----QSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSC--------C-CCSS----SCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccc--------c-CCCC----CCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 346788999999999999999998542110 0 0000 112221111111 23467899999999654
Q ss_pred hHH------HHHHHhh--hCCEEEEEEECCCCCcHHHHHHHHHHHHc
Q psy5021 727 YIK------NMITGAA--QMDGAILVCSAVDGPMPQTREHILLARQV 765 (1021)
Q Consensus 727 ~~~------~~~~~~~--~aD~ailVvDa~~g~~~qt~e~l~~~~~~ 765 (1021)
..+ ..+..+. .++ ++|+|+..++..+...++.++...
T Consensus 104 ~~~~~~~~~~~~fala~llss--~lv~n~~~~i~~~dl~~l~~v~e~ 148 (592)
T 1f5n_A 104 VEKGDNQNDSWIFALAVLLSS--TFVYNSIGTINQQAMDQLYYVTEL 148 (592)
T ss_dssp GGGCCCTTHHHHHHHHHHHCS--EEEEEEESCSSHHHHHTTHHHHTH
T ss_pred ccccchhHHHHHHHHHHHhcC--eEEEECCCCccHHHHHHHHHHHHH
Confidence 321 1221122 233 678888888888877766654443
No 450
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.23 E-value=0.0011 Score=70.60 Aligned_cols=92 Identities=11% Similarity=-0.024 Sum_probs=63.5
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEE-EEEeCcCCCC------CCH-
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKM-IFVNKMDRIG------ANY- 146 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~i-iviNK~D~~~------~~~- 146 (1021)
..|.+.+||||+..........++..+|.+|+|+.+.......+...++.+...++|++ +++|+.|... ...
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 206 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIF 206 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTT
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCccCCcccccccccc
Confidence 36889999999976643333334457999999999887766677778888888899988 8899987411 000
Q ss_pred -HHHHHHHHHHhCCceeeeeee
Q psy5021 147 -NNCIIDIKKKFNCIVLPINFN 167 (1021)
Q Consensus 147 -~~~~~~i~~~l~~~~~~~~~p 167 (1021)
...++++.+.++..... .+|
T Consensus 207 ~~~~~~~~~~~~g~~~~~-~Ip 227 (262)
T 2ph1_A 207 GEGKGESLAKKYNIGFFT-SIP 227 (262)
T ss_dssp CCCCHHHHHHHTTCSEEE-ECC
T ss_pred cccHHHHHHHHcCCCeEE-Eee
Confidence 22356677777765433 344
No 451
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.09 E-value=0.00058 Score=77.59 Aligned_cols=126 Identities=20% Similarity=0.172 Sum_probs=66.6
Q ss_pred cceeeeeeeeeccchhhhhhhccccccccccccccccccCCc---------hhhhhcCceEeeeEE-------------E
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNA---------PEEKERGITISTSHV-------------E 708 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~d~~---------~~e~~~G~Ti~~~~~-------------~ 708 (1021)
...+.++|.+++||||++..|.......+. ..... ..|.. ......|+.+..... .
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~-kVllv-~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~ 177 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGY-KVGVV-CSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDY 177 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEE-ECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCC-eEEEE-eCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHH
Confidence 456788889999999999999742211111 00000 00110 111222332211100 0
Q ss_pred EeeCCeEEEEEecCChhh----hHHHH--HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 709 YESENKHYAHVDCPGHAD----YIKNM--ITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 709 ~~~~~~~i~liDtpG~~~----~~~~~--~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
+...+..+.|+||||... ....+ +..+..+|.++||+||..|.. ....+..... .++...|++||+|...
T Consensus 178 a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~--a~~~a~~f~~-~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 178 FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ--AYNQALAFKE-ATPIGSIIVTKLDGSA 253 (443)
T ss_dssp HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHH-SCTTEEEEEECCSSCS
T ss_pred HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh--HHHHHHHHHh-hCCCeEEEEECCCCcc
Confidence 112457899999999432 22221 223456899999999987532 2233332222 3343567889999864
No 452
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.05 E-value=0.0018 Score=77.64 Aligned_cols=68 Identities=10% Similarity=0.150 Sum_probs=41.4
Q ss_pred eeEEEEcCCCCCCc---------HHHH----HHHhhc-cCeEEEEEeCCCCCc-hhHHHHHHHHhhcCCCEEEEEeCcCC
Q psy5021 77 YMINIIDTPGHVDF---------TIEV----ERSLRV-LDGAVIIICASSGIQ-PQTETVWFQSQKYKVPKMIFVNKMDR 141 (1021)
Q Consensus 77 ~~i~liDtPG~~~f---------~~~~----~~~l~~-~D~~ilvvda~~g~~-~~t~~~~~~~~~~~~p~iiviNK~D~ 141 (1021)
..+.++|.||...- ...+ ..++.. ...+++++++..... .....+++.+...+.+.|+|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 46999999985331 1222 222333 256667777665433 23355666666778999999999998
Q ss_pred CCC
Q psy5021 142 IGA 144 (1021)
Q Consensus 142 ~~~ 144 (1021)
...
T Consensus 227 v~~ 229 (608)
T 3szr_A 227 VDK 229 (608)
T ss_dssp SSS
T ss_pred cCc
Confidence 743
No 453
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.03 E-value=0.00086 Score=76.59 Aligned_cols=67 Identities=18% Similarity=0.132 Sum_probs=41.6
Q ss_pred CCeEEEEEecCChhhh----HHHHHHH--hhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCC-CeEEEEEeeccccc
Q psy5021 712 ENKHYAHVDCPGHADY----IKNMITG--AAQMDGAILVCSAVDGPMPQTREHILLARQVGV-PNIVVFLNKADCVQ 781 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~~----~~~~~~~--~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~i-p~iIvviNK~Dl~~ 781 (1021)
.+..+.|+||||.... ...+... +..+|.+++|+||..|. .....+... ..++ +...+++||+|...
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~-~~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAF-KEAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHH-HTTSCSCEEEEEECSSSCS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHH-hhcccCCeEEEEeCCCCcc
Confidence 5678999999996543 2222111 12589999999998753 222222221 2235 54678899999754
No 454
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.01 E-value=0.00096 Score=73.34 Aligned_cols=148 Identities=16% Similarity=0.067 Sum_probs=73.2
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc-CCcccccChHHH------hhhCceeeeeeeEEE-----eec--
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH-HGTTITDWMQQE------QERGITITSASVSIF-----WEV-- 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~-~~~~~~d~~~~e------~~rgiTi~~~~~~~~-----~~~-- 72 (1021)
+-..++++|+.|+|||||+..|...-.. ..|++. .+.........| +..|+.+......+. +..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 3567999999999999999998743210 011110 000000011111 223433322110000 000
Q ss_pred --ccCceeEEEEcCCCCCCcH----HHHHHH--hhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 73 --NKFKYMINIIDTPGHVDFT----IEVERS--LRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 73 --~~~~~~i~liDtPG~~~f~----~~~~~~--l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
...++.+.++||+|..... .+.... .-..|-.++++|+..+. +.....+...+.--...+++||+|.. +
T Consensus 206 ~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~-a 282 (328)
T 3e70_C 206 HAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDAD-A 282 (328)
T ss_dssp HHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGC-S
T ss_pred HHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCc-c
Confidence 0124567789999974432 222211 12468999999988762 33333333332222347889999973 3
Q ss_pred CHHHHHHHHHHHhCCc
Q psy5021 145 NYNNCIIDIKKKFNCI 160 (1021)
Q Consensus 145 ~~~~~~~~i~~~l~~~ 160 (1021)
..... -++...++.+
T Consensus 283 ~~G~~-l~~~~~~~~p 297 (328)
T 3e70_C 283 RGGAA-LSISYVIDAP 297 (328)
T ss_dssp CCHHH-HHHHHHHTCC
T ss_pred chhHH-HHHHHHHCCC
Confidence 33332 2344445543
No 455
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.00 E-value=0.0028 Score=69.29 Aligned_cols=85 Identities=19% Similarity=0.135 Sum_probs=57.1
Q ss_pred ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh----cCCCEE-EEEeCcCCCCCCHHHHH
Q psy5021 76 KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK----YKVPKM-IFVNKMDRIGANYNNCI 150 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~----~~~p~i-iviNK~D~~~~~~~~~~ 150 (1021)
.|.+.+||||+..... .+..++..+|.+|+|+++...-...+..+++.+.. .+++++ +|+|+.+.. ..+
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-----~~~ 229 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----DEV 229 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----HHH
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-----HHH
Confidence 5889999999875532 23457789999999998765433445555555554 456655 789999942 456
Q ss_pred HHHHHHhCCceeeeeee
Q psy5021 151 IDIKKKFNCIVLPINFN 167 (1021)
Q Consensus 151 ~~i~~~l~~~~~~~~~p 167 (1021)
+++.+.++..... .+|
T Consensus 230 ~~~~~~~g~~v~~-~Ip 245 (307)
T 3end_A 230 DRFCKETNFRRLA-HMP 245 (307)
T ss_dssp HHHHHHHTCCEEE-EEC
T ss_pred HHHHHHcCCCcee-eCC
Confidence 6777777765543 344
No 456
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.99 E-value=0.00083 Score=70.92 Aligned_cols=86 Identities=10% Similarity=-0.031 Sum_probs=61.1
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCCHHHHHHHH
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGANYNNCIIDI 153 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i 153 (1021)
..|.+.+||||+.... .+..++..+|.+|+|+++..........+.+.+...+++ +.+++||.+. ....+++
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~-----~~~~~~~ 202 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN-----IKEEKLI 202 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC-----HHHHHHH
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC-----hhHHHHH
Confidence 4788999999987654 567788999999999998654444555566666666765 5678999983 2346677
Q ss_pred HHHhCCceeeeeee
Q psy5021 154 KKKFNCIVLPINFN 167 (1021)
Q Consensus 154 ~~~l~~~~~~~~~p 167 (1021)
.+.++..++...+|
T Consensus 203 ~~~~~~~~~~~~Ip 216 (254)
T 3kjh_A 203 KKHLPEDKILGIIP 216 (254)
T ss_dssp HHHSCGGGEEEEEE
T ss_pred HHHhcCCccccccc
Confidence 78887444444444
No 457
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.96 E-value=0.0017 Score=70.39 Aligned_cols=67 Identities=19% Similarity=0.134 Sum_probs=43.5
Q ss_pred CCeEEEEEecCChhh--hHHHHH------HHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 712 ENKHYAHVDCPGHAD--YIKNMI------TGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~--~~~~~~------~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
.++.+.|+||||... ....+. ..+..+|.+++|+|+..+ .+..+.+..... .++-..+++||+|...
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTA 253 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCT
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCc
Confidence 567899999999665 322222 345678999999999864 233333333332 4554567889999753
No 458
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.96 E-value=0.0026 Score=69.69 Aligned_cols=82 Identities=20% Similarity=0.195 Sum_probs=47.2
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHh------------hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCE-EEEEeCcCC
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSL------------RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPK-MIFVNKMDR 141 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l------------~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~-iiviNK~D~ 141 (1021)
.+|.+.||||||...........+ ..+|.+++|+|+..+ ..+....+... ...++ =+++||+|.
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~-~~~~i~GvVltk~d~ 266 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFS-KVADVSGIILTKMDS 266 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHT-TTSCCCEEEEECGGG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHh-hcCCCcEEEEeCCCC
Confidence 468899999999766433332222 137899999999855 22222222211 22443 367899997
Q ss_pred CCCCHHHHHHHHHHHhCCce
Q psy5021 142 IGANYNNCIIDIKKKFNCIV 161 (1021)
Q Consensus 142 ~~~~~~~~~~~i~~~l~~~~ 161 (1021)
.. ... .+.++...++.+.
T Consensus 267 ~~-~~g-~~~~~~~~~~~Pi 284 (320)
T 1zu4_A 267 TS-KGG-IGLAIKELLNIPI 284 (320)
T ss_dssp CS-CTT-HHHHHHHHHCCCE
T ss_pred CC-chh-HHHHHHHHHCcCE
Confidence 43 222 3445555666543
No 459
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.95 E-value=0.0015 Score=74.84 Aligned_cols=147 Identities=18% Similarity=0.130 Sum_probs=73.3
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc--cCCccccc--C--hH-HHhhhCceeeeeeeEEEee--------
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV--HHGTTITD--W--MQ-QEQERGITITSASVSIFWE-------- 71 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~--~~~~~~~d--~--~~-~e~~rgiTi~~~~~~~~~~-------- 71 (1021)
.-..|+|+|..|+|||||+..|...... ..|.+ ..+..+.. . .. ....+++.+-.....+...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~ 369 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 369 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHH
Confidence 4467999999999999999998743210 11221 11111100 0 00 1123344433221110000
Q ss_pred -cccCceeEEEEcCCCCCCcHHHH-------HHHhh-----ccCeEEEEEeCCCCCchhHHHHHHHHh-hcCCCEEEEEe
Q psy5021 72 -VNKFKYMINIIDTPGHVDFTIEV-------ERSLR-----VLDGAVIIICASSGIQPQTETVWFQSQ-KYKVPKMIFVN 137 (1021)
Q Consensus 72 -~~~~~~~i~liDtPG~~~f~~~~-------~~~l~-----~~D~~ilvvda~~g~~~~t~~~~~~~~-~~~~p~iiviN 137 (1021)
....++.+.||||+|........ .+.++ ..+-++||+|+..|... ....+... ..++ ..+++|
T Consensus 370 ~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a--l~~ak~f~~~~~i-tgvIlT 446 (503)
T 2yhs_A 370 AAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA--VSQAKLFHEAVGL-TGITLT 446 (503)
T ss_dssp HHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH--HHHHHHHHHHTCC-SEEEEE
T ss_pred HHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH--HHHHHHHHhhcCC-CEEEEE
Confidence 01235678899999975432221 22222 24678999999877321 22222222 2343 357899
Q ss_pred CcCCCCCCHHHHHHHHHHHhCCc
Q psy5021 138 KMDRIGANYNNCIIDIKKKFNCI 160 (1021)
Q Consensus 138 K~D~~~~~~~~~~~~i~~~l~~~ 160 (1021)
|+|.. +... .+-.+...++..
T Consensus 447 KLD~t-akgG-~~lsi~~~~~~P 467 (503)
T 2yhs_A 447 KLDGT-AKGG-VIFSVADQFGIP 467 (503)
T ss_dssp CGGGC-SCCT-HHHHHHHHHCCC
T ss_pred cCCCc-cccc-HHHHHHHHHCCC
Confidence 99963 2222 334455555543
No 460
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=96.94 E-value=0.00072 Score=73.61 Aligned_cols=83 Identities=13% Similarity=0.045 Sum_probs=59.2
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh------cCCCEE-EEEeCcCCCCCCHH
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK------YKVPKM-IFVNKMDRIGANYN 147 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~------~~~p~i-iviNK~D~~~~~~~ 147 (1021)
..|.+.+||||+.... ....++..+|.+|+++.+...........++.+.. .+++++ +++|+.|.......
T Consensus 153 ~~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~ 230 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIK 230 (298)
T ss_dssp GGCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHH
T ss_pred cCCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHH
Confidence 3578999999997653 45667788999999999876655555555555443 367755 78999997543345
Q ss_pred HHHHHHHHHhCC
Q psy5021 148 NCIIDIKKKFNC 159 (1021)
Q Consensus 148 ~~~~~i~~~l~~ 159 (1021)
+.++++.+.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (298)
T 2oze_A 231 SNLEELYKQHKE 242 (298)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhcc
Confidence 667778777764
No 461
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.86 E-value=0.0019 Score=73.28 Aligned_cols=149 Identities=14% Similarity=0.109 Sum_probs=74.9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCC---CcccccccCCcc-cccCh-HHHhhhCceeeeeee-----EEEe---ec-
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGS---SHKIGEVHHGTT-ITDWM-QQEQERGITITSASV-----SIFW---EV- 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~---~~~~g~~~~~~~-~~d~~-~~e~~rgiTi~~~~~-----~~~~---~~- 72 (1021)
..+.|+++|+.|+||||++..|...... -...-..+.... ..+.. ......|+.+-.... .+.. ..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998743211 111000011000 00000 011123443332210 0000 00
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHH------HhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCC
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVER------SLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGAN 145 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~------~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~ 145 (1021)
...++.+.+|||||.......... .+..+|.+++|+|+..+. ......+.... .++ .-+++||+|... .
T Consensus 177 ~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f~~-~l~i~GVIlTKlD~~~-~ 252 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAFDE-KVGVTGLVLTKLDGDA-R 252 (425)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHH-HTCCCEEEEESGGGCS-S
T ss_pred HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHHHh-cCCceEEEEeCcCCcc-c
Confidence 124678999999997654322221 223589999999998652 22222222221 344 456899999742 2
Q ss_pred HHHHHHHHHHHhCCc
Q psy5021 146 YNNCIIDIKKKFNCI 160 (1021)
Q Consensus 146 ~~~~~~~i~~~l~~~ 160 (1021)
.. ...++...++.+
T Consensus 253 ~g-~alsi~~~~g~P 266 (425)
T 2ffh_A 253 GG-AALSARHVTGKP 266 (425)
T ss_dssp CH-HHHHHHHHHCCC
T ss_pred HH-HHHHHHHHHCCC
Confidence 22 233455556654
No 462
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.79 E-value=0.0015 Score=70.95 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=51.2
Q ss_pred HhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEE
Q psy5021 734 GAAQMDGAILVCSAVDGPMPQT--REHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVI 811 (1021)
Q Consensus 734 ~~~~aD~ailVvDa~~g~~~qt--~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~ 811 (1021)
.+.++|.+++|+|+..+.+... .+.+..+...++| .++|+||+|+.++.+. +...+++.+..+..|+ ++++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~-~vivlnK~DL~~~~~~-~~~~~~~~~~y~~~g~-----~v~~ 155 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQ-PIICITKMDLIEDQDT-EDTIQAYAEDYRNIGY-----DVYL 155 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCE-EEEEEECGGGCCCHHH-HHHHHHHHHHHHHHTC-----CEEE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEECCccCchhhh-HHHHHHHHHHHHhCCC-----eEEE
Confidence 3788999999999997665433 3344444557888 6788999999874321 0112334444444554 5788
Q ss_pred ecccccc
Q psy5021 812 GSALLAL 818 (1021)
Q Consensus 812 iSa~~~~ 818 (1021)
+||.++.
T Consensus 156 ~sa~~~~ 162 (307)
T 1t9h_A 156 TSSKDQD 162 (307)
T ss_dssp CCHHHHT
T ss_pred EecCCCC
Confidence 9998763
No 463
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.79 E-value=0.0033 Score=66.87 Aligned_cols=82 Identities=10% Similarity=0.180 Sum_probs=59.6
Q ss_pred ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEE-EEEeCcCCCCCCHHHHHHHHH
Q psy5021 76 KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKM-IFVNKMDRIGANYNNCIIDIK 154 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~~~~~i~ 154 (1021)
.|.+.+||||+... ..+..++..+|.+|+|+.+.......+...++.+...+.+.+ +++|+.|..... ..++++.
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~~ 185 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGIE--MAKNEIE 185 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTHH--HHHHHHH
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCccccc--chHHHHH
Confidence 57899999998765 667788999999999998765444556666666666666554 679999964322 4566777
Q ss_pred HHhCCce
Q psy5021 155 KKFNCIV 161 (1021)
Q Consensus 155 ~~l~~~~ 161 (1021)
+.++...
T Consensus 186 ~~~~~~~ 192 (263)
T 1hyq_A 186 AILEAKV 192 (263)
T ss_dssp HHTTSCE
T ss_pred HHhCCCe
Confidence 7777543
No 464
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.72 E-value=0.0021 Score=69.60 Aligned_cols=148 Identities=11% Similarity=0.062 Sum_probs=70.5
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHH----cCCCcccccccCC-cccccChH-HHhhhCceeeeee----eEEEeecccCc
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFY----SGSSHKIGEVHHG-TTITDWMQ-QEQERGITITSAS----VSIFWEVNKFK 76 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~----~~~~~~~g~~~~~-~~~~d~~~-~e~~rgiTi~~~~----~~~~~~~~~~~ 76 (1021)
+-+.|+++|+.|+||||++..|... .|.....-..+.. ....+... .-...|+.+.... ...... .-.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~~~ 182 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LFSE 182 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-HhcC
Confidence 3568999999999999999998632 2311110000110 00000000 0011122221100 000000 0126
Q ss_pred eeEEEEcCCCCCCcHHHHH----HHhh--ccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEeCcCCCCCCHHHHH
Q psy5021 77 YMINIIDTPGHVDFTIEVE----RSLR--VLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCI 150 (1021)
Q Consensus 77 ~~i~liDtPG~~~f~~~~~----~~l~--~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~ 150 (1021)
+.+.|+||||......... ..+. ..|.+++|+|++.+.. ....+.+.....++ .-+++||+|... ... .+
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~-~giVltk~D~~~-~~g-~~ 258 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPV-NQYIFTKIDETT-SLG-SV 258 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCC-CEEEEECTTTCS-CCH-HH
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCC-CEEEEeCCCccc-chh-HH
Confidence 7899999999876543322 2222 3578899999986531 12222222222222 345679999753 333 23
Q ss_pred HHHHHHhCC
Q psy5021 151 IDIKKKFNC 159 (1021)
Q Consensus 151 ~~i~~~l~~ 159 (1021)
.++...++.
T Consensus 259 ~~~~~~~~~ 267 (296)
T 2px0_A 259 FNILAESKI 267 (296)
T ss_dssp HHHHHTCSC
T ss_pred HHHHHHHCc
Confidence 334444543
No 465
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.69 E-value=0.0013 Score=74.62 Aligned_cols=66 Identities=20% Similarity=0.151 Sum_probs=40.7
Q ss_pred CCeEEEEEecCChhh------hHHHHHH--HhhhCCEEEEEEECCCCCcHHHHHHHHHHH-HcCCCeEEEEEeeccccc
Q psy5021 712 ENKHYAHVDCPGHAD------YIKNMIT--GAAQMDGAILVCSAVDGPMPQTREHILLAR-QVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~------~~~~~~~--~~~~aD~ailVvDa~~g~~~qt~e~l~~~~-~~~ip~iIvviNK~Dl~~ 781 (1021)
.+..+.++||||... +...+.. ....+|.++||+|+..|.. ..+.+.... ..+ + ..|++||+|...
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~-~-~gVIlTKlD~~a 252 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQASP-I-GSVIITKMDGTA 252 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHHCS-S-EEEEEECGGGCS
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcccC-C-cEEEEecccccc
Confidence 367889999999533 3333322 2235799999999987532 222333232 223 3 567889999754
No 466
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.67 E-value=0.0043 Score=67.44 Aligned_cols=147 Identities=17% Similarity=0.136 Sum_probs=72.7
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccc--cCCccccc--ChHHH---hhhCceeeeeeeEE-Ee----ec--
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEV--HHGTTITD--WMQQE---QERGITITSASVSI-FW----EV-- 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~--~~~~~~~d--~~~~e---~~rgiTi~~~~~~~-~~----~~-- 72 (1021)
+-..|+|+|+.|+|||||+..|...... ..|++ .....+.. ..+.. +.+++.+-...... .+ ..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 3468999999999999999999743211 11111 11111000 00000 12333332111000 00 00
Q ss_pred --ccCceeEEEEcCCCCCCcHHHHH-------HH----h-hccCeEEEEEeCCCCCchhHHHHHHHH-hhcCCCEEEEEe
Q psy5021 73 --NKFKYMINIIDTPGHVDFTIEVE-------RS----L-RVLDGAVIIICASSGIQPQTETVWFQS-QKYKVPKMIFVN 137 (1021)
Q Consensus 73 --~~~~~~i~liDtPG~~~f~~~~~-------~~----l-~~~D~~ilvvda~~g~~~~t~~~~~~~-~~~~~p~iiviN 137 (1021)
...++.+.++||+|......... .+ + ...+.+++++|+..+.. ....++.. ...++ .++++|
T Consensus 179 ~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~-t~iivT 255 (304)
T 1rj9_A 179 AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGL-TGVIVT 255 (304)
T ss_dssp HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCC-SEEEEE
T ss_pred HHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCC-cEEEEE
Confidence 01134577999999754322211 11 1 23677899999987643 22223333 23344 578899
Q ss_pred CcCCCCCCHHHHHHHHHHHhCCc
Q psy5021 138 KMDRIGANYNNCIIDIKKKFNCI 160 (1021)
Q Consensus 138 K~D~~~~~~~~~~~~i~~~l~~~ 160 (1021)
|.|.. +... .+-.+...++.+
T Consensus 256 h~d~~-a~gg-~~l~i~~~~~~p 276 (304)
T 1rj9_A 256 KLDGT-AKGG-VLIPIVRTLKVP 276 (304)
T ss_dssp CTTSS-CCCT-THHHHHHHHCCC
T ss_pred CCccc-cccc-HHHHHHHHHCCC
Confidence 99974 3222 233555556544
No 467
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.61 E-value=0.0038 Score=67.62 Aligned_cols=149 Identities=15% Similarity=0.125 Sum_probs=73.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHc---CCCcccccccCCcccccC-h-HHHhhhCceeeeeee-----EEEe---ec-
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYS---GSSHKIGEVHHGTTITDW-M-QQEQERGITITSASV-----SIFW---EV- 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~---~~~~~~g~~~~~~~~~d~-~-~~e~~rgiTi~~~~~-----~~~~---~~- 72 (1021)
.-+.++++|+.|+||||++..|.... +.-....+.+.......+ . ......|+.+-.... .+.. ..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999886432 111110011111100000 0 011123443332100 0000 00
Q ss_pred ccCceeEEEEcCCCCCCcHHHHHHHh------hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCC-EEEEEeCcCCCCCC
Q psy5021 73 NKFKYMINIIDTPGHVDFTIEVERSL------RVLDGAVIIICASSGIQPQTETVWFQSQKYKVP-KMIFVNKMDRIGAN 145 (1021)
Q Consensus 73 ~~~~~~i~liDtPG~~~f~~~~~~~l------~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p-~iiviNK~D~~~~~ 145 (1021)
...++.+.++||||...........+ ..+|.+++|+|+..+ .......+.... .++ .-+++||+|... .
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~~-~ 252 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDA-R 252 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGCS-S
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCCc-c
Confidence 01368899999998754422222221 247999999998754 222222222221 244 446899999753 3
Q ss_pred HHHHHHHHHHHhCCc
Q psy5021 146 YNNCIIDIKKKFNCI 160 (1021)
Q Consensus 146 ~~~~~~~i~~~l~~~ 160 (1021)
.. ...++...++.+
T Consensus 253 ~g-~~~~~~~~~~~p 266 (295)
T 1ls1_A 253 GG-AALSARHVTGKP 266 (295)
T ss_dssp CH-HHHHHHHHHCCC
T ss_pred HH-HHHHHHHHHCcC
Confidence 33 233444555544
No 468
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=96.59 E-value=0.00062 Score=73.70 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=53.2
Q ss_pred ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCC----CchhHHH-------------HH--HHHh----hcC-CC
Q psy5021 76 KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG----IQPQTET-------------VW--FQSQ----KYK-VP 131 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g----~~~~t~~-------------~~--~~~~----~~~-~p 131 (1021)
.|.+.+||||+.. ...+..++..+|.+|+|+.+... ....... +| +.++ ..+ .+
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD 180 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHHHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCccHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence 5789999999985 56788899999999999988631 1110111 22 3222 224 67
Q ss_pred EEEEEeCcCCCC-CCHHHHHHHHHHH---hCC
Q psy5021 132 KMIFVNKMDRIG-ANYNNCIIDIKKK---FNC 159 (1021)
Q Consensus 132 ~iiviNK~D~~~-~~~~~~~~~i~~~---l~~ 159 (1021)
+.+|+|++|... ....+..+.+++. ++.
T Consensus 181 ~~vV~N~~~~~~~~~~~~~~~~l~~~~~~~g~ 212 (286)
T 2xj4_A 181 WVVLRNRLATTEARNRKRLEDRLNALAKRVGF 212 (286)
T ss_dssp EEEEEECCTTCCGGGHHHHHHHHHHHHHHHCC
T ss_pred EEEEEeeecCCCcchhHHHHHHHHHHHHHcCC
Confidence 788999999765 3344455555553 664
No 469
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=96.58 E-value=0.015 Score=51.98 Aligned_cols=62 Identities=29% Similarity=0.264 Sum_probs=46.7
Q ss_pred ceEEEEEEEeeEEecCCEEEeCCCc-eeeEeceEEEeecCCeeccccccCCCEEEE--ecCC-ccccCCeecc
Q psy5021 312 GSLSFIRIYSGFIKVGDLVYNSTKK-VKEKIFRILRMFANSKKDINDAHFGDIVVI--VGLK-ESSTGDTLCS 380 (1021)
Q Consensus 312 g~~~~~RV~sG~l~~gd~v~~~~~~-~~~~i~~i~~~~g~~~~~v~~a~aGdIv~i--~gl~-~~~~gdtl~~ 380 (1021)
|.+..|||.+|+|++|+.| +.+ ...+|.+|.. ..+++++|.|||-|++ .|.. ++..||.|..
T Consensus 48 gpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~----~~e~v~eA~~GdnVai~Ikg~~~~I~~GdVLyv 113 (116)
T 1xe1_A 48 KDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIER----NREKVEFAIAGDRIGISIEGKIGKVKKGDVLEI 113 (116)
T ss_dssp EEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEE----TTEEESEEETTCEEEEEEESCCCCCCTTCEEEE
T ss_pred CCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEE----CCcCcCCcCCCCEEEEEEECCccccCCCcEEEE
Confidence 7889999999999999999 333 3455666643 3467999999999998 3433 6777777653
No 470
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.51 E-value=0.0026 Score=69.17 Aligned_cols=151 Identities=17% Similarity=0.115 Sum_probs=72.8
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHc---CCCcccccccCCc-ccccCh-HHHhhhCceeeeeee-----EEE---ee-
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFYS---GSSHKIGEVHHGT-TITDWM-QQEQERGITITSASV-----SIF---WE- 71 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~~---~~~~~~g~~~~~~-~~~d~~-~~e~~rgiTi~~~~~-----~~~---~~- 71 (1021)
..-+.|+++|+.|+||||++..|...- +.-......+... ...+.. ..-...|+.+-.... .+. ..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 345789999999999999999886432 1110000001000 000000 000122443321100 000 00
Q ss_pred cccCceeEEEEcCCCCCCcHHHHHH-------Hh-----hccCeEEEEEeCCCCCchhHHHHHHHHh-hcCCCEEEEEeC
Q psy5021 72 VNKFKYMINIIDTPGHVDFTIEVER-------SL-----RVLDGAVIIICASSGIQPQTETVWFQSQ-KYKVPKMIFVNK 138 (1021)
Q Consensus 72 ~~~~~~~i~liDtPG~~~f~~~~~~-------~l-----~~~D~~ilvvda~~g~~~~t~~~~~~~~-~~~~p~iiviNK 138 (1021)
....++.+.++||||.......... .+ ...|.+++|+|+..+. ......+... ..++ .-+++||
T Consensus 182 a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a~~~~~~~~i-~gvVlTk 258 (306)
T 1vma_A 182 ALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAVNV-TGIILTK 258 (306)
T ss_dssp HHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHSCC-CEEEEEC
T ss_pred HHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHHHHHHhcCCC-CEEEEeC
Confidence 0113577999999997554433322 22 1378899999997431 1111122222 2222 3456899
Q ss_pred cCCCCCCHHHHHHHHHHHhCCce
Q psy5021 139 MDRIGANYNNCIIDIKKKFNCIV 161 (1021)
Q Consensus 139 ~D~~~~~~~~~~~~i~~~l~~~~ 161 (1021)
+|.. +.... +.++...++.+.
T Consensus 259 ~D~~-~~gG~-~l~~~~~~~~Pi 279 (306)
T 1vma_A 259 LDGT-AKGGI-TLAIARELGIPI 279 (306)
T ss_dssp GGGC-SCTTH-HHHHHHHHCCCE
T ss_pred CCCc-cchHH-HHHHHHHHCCCE
Confidence 9974 33333 455666666543
No 471
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.50 E-value=0.0052 Score=73.62 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=40.4
Q ss_pred CeEEEEEecCChhh------------hHHHHHHH-hhh-CCEEEEEEECCCCCcHH-HHHHHHHHHHcCCCeEEEEEeec
Q psy5021 713 NKHYAHVDCPGHAD------------YIKNMITG-AAQ-MDGAILVCSAVDGPMPQ-TREHILLARQVGVPNIVVFLNKA 777 (1021)
Q Consensus 713 ~~~i~liDtpG~~~------------~~~~~~~~-~~~-aD~ailVvDa~~g~~~q-t~e~l~~~~~~~ip~iIvviNK~ 777 (1021)
...++++|.||... -+..++.. +.. ..+++++++++.....+ ....+..+...|.+ .|+|+||+
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~r-tI~VlTK~ 224 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDR-TIGILTKP 224 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCS-EEEEEECG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCc-eEEEecch
Confidence 35689999997432 23333433 333 46777778876554422 23333333334667 88899999
Q ss_pred cccc
Q psy5021 778 DCVQ 781 (1021)
Q Consensus 778 Dl~~ 781 (1021)
|++.
T Consensus 225 Dlv~ 228 (608)
T 3szr_A 225 DLVD 228 (608)
T ss_dssp GGSS
T ss_pred hhcC
Confidence 9986
No 472
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.49 E-value=0.0071 Score=64.47 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=54.5
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhc--CCCEEEEEeCcCCCCCCHHHHHHH
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY--KVPKMIFVNKMDRIGANYNNCIID 152 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~--~~p~iiviNK~D~~~~~~~~~~~~ 152 (1021)
..|.+.+||||+... ..+..++..+|.+|+|+.+...-......+++.+... +.++.+|+|+.+... ...+..+.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~-~~~~~~~~ 219 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNR-THKTLFEI 219 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTTC-SCCHHHHH
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCcc-hHHHHHHH
Confidence 357899999999764 5677888899999999998765444455666666655 467889999995432 23344444
Q ss_pred HHH
Q psy5021 153 IKK 155 (1021)
Q Consensus 153 i~~ 155 (1021)
+++
T Consensus 220 l~~ 222 (267)
T 3k9g_A 220 LKT 222 (267)
T ss_dssp HTT
T ss_pred Hhc
Confidence 433
No 473
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.43 E-value=0.0094 Score=67.88 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=23.4
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHH
Q psy5021 6 LYFRNIGIIAHVDAGKTTTTERILFY 31 (1021)
Q Consensus 6 ~~irni~iiG~~~~GKTTL~~~Ll~~ 31 (1021)
.++--|+|+|..++|||||+|+|+..
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 46778999999999999999999865
No 474
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.36 E-value=0.0037 Score=71.62 Aligned_cols=124 Identities=19% Similarity=0.164 Sum_probs=64.1
Q ss_pred ceeeeeeeeeccchhhhhhhccccccccccccccc-cccCCc------h-hhhhcCceEeeeEEE-------------Ee
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAF-DTIDNA------P-EEKERGITISTSHVE-------------YE 710 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~-~~~d~~------~-~e~~~G~Ti~~~~~~-------------~~ 710 (1021)
...+++|.+++|||||++.|.+..... ++..... .-..+. . ....+++.+-..... ..
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAK 372 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHH
Confidence 467899999999999999997643211 1222110 000111 0 111233322111100 01
Q ss_pred eCCeEEEEEecCChhhh----HHH---HHHHhh-----hCCEEEEEEECCCCCcHHHHHHHHH-HHHcCCCeEEEEEeec
Q psy5021 711 SENKHYAHVDCPGHADY----IKN---MITGAA-----QMDGAILVCSAVDGPMPQTREHILL-ARQVGVPNIVVFLNKA 777 (1021)
Q Consensus 711 ~~~~~i~liDtpG~~~~----~~~---~~~~~~-----~aD~ailVvDa~~g~~~qt~e~l~~-~~~~~ip~iIvviNK~ 777 (1021)
..+..+.|+||+|.... +.. +...++ ..+-++||+|++.|.. ....+.. ....++. . +++||+
T Consensus 373 ~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~--al~~ak~f~~~~~it-g-vIlTKL 448 (503)
T 2yhs_A 373 ARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN--AVSQAKLFHEAVGLT-G-ITLTKL 448 (503)
T ss_dssp HTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH--HHHHHHHHHHHTCCS-E-EEEECG
T ss_pred hcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH--HHHHHHHHHhhcCCC-E-EEEEcC
Confidence 24567889999995322 211 111122 2578899999987521 2222322 2345776 3 467999
Q ss_pred ccc
Q psy5021 778 DCV 780 (1021)
Q Consensus 778 Dl~ 780 (1021)
|-.
T Consensus 449 D~t 451 (503)
T 2yhs_A 449 DGT 451 (503)
T ss_dssp GGC
T ss_pred CCc
Confidence 964
No 475
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.25 E-value=0.026 Score=58.95 Aligned_cols=81 Identities=17% Similarity=0.106 Sum_probs=58.6
Q ss_pred ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCC---CEEEEEeCcCCCCCCHHHHHHH
Q psy5021 76 KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV---PKMIFVNKMDRIGANYNNCIID 152 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~---p~iiviNK~D~~~~~~~~~~~~ 152 (1021)
.|.+.+||||+... .....++..+|.+|+|+.+.......+...++.+...+. ..-+++|+.|...... .++
T Consensus 118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~~---~~~ 192 (245)
T 3ea0_A 118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRIT---SDE 192 (245)
T ss_dssp HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTSC---HHH
T ss_pred hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCCC---HHH
Confidence 57899999999764 356778999999999998875545556666777766653 3677899999653322 256
Q ss_pred HHHHhCCce
Q psy5021 153 IKKKFNCIV 161 (1021)
Q Consensus 153 i~~~l~~~~ 161 (1021)
+++.++...
T Consensus 193 ~~~~~~~~v 201 (245)
T 3ea0_A 193 IEKVIGRPI 201 (245)
T ss_dssp HHHHHTSCE
T ss_pred HHHHhCCCe
Confidence 677777644
No 476
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.15 E-value=0.003 Score=72.07 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=40.0
Q ss_pred CCeEEEEEecCChhhhHHHHHH------HhhhCCEEEEEEECCCCCcHHHHHHHHHHH-HcCCCeEEEEEeeccccc
Q psy5021 712 ENKHYAHVDCPGHADYIKNMIT------GAAQMDGAILVCSAVDGPMPQTREHILLAR-QVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~~~~~~~~------~~~~aD~ailVvDa~~g~~~qt~e~l~~~~-~~~ip~iIvviNK~Dl~~ 781 (1021)
.+..+.|+||||...+...+.. .+..+|.+++|+|+..+.. ....+.... ..++. -|++||+|...
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f~~~l~i~--gvVlnK~D~~~ 254 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAFNEALPLT--GVVLTKVDGDA 254 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHHHHHSCCC--CEEEECTTSSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHHhccCCCe--EEEEecCCCCc
Confidence 4678999999996443222222 2346899999999987632 222222222 23433 35789999753
No 477
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.03 E-value=0.0038 Score=67.67 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=37.1
Q ss_pred HhhccCeEEEEEeCCCCCchhH--HHHHHHHhhcCCCEEEEEeCcCCCCC
Q psy5021 97 SLRVLDGAVIIICASSGIQPQT--ETVWFQSQKYKVPKMIFVNKMDRIGA 144 (1021)
Q Consensus 97 ~l~~~D~~ilvvda~~g~~~~t--~~~~~~~~~~~~p~iiviNK~D~~~~ 144 (1021)
.+..+|.+++|+|+.++..... .+.+..+...++|+++|+||+|+...
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIED 132 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCC
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCch
Confidence 6889999999999997654433 34444556789999999999999643
No 478
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.81 E-value=0.0051 Score=66.82 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=52.9
Q ss_pred ceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEE-EEEeCcCCC
Q psy5021 76 KYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKM-IFVNKMDRI 142 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~i-iviNK~D~~ 142 (1021)
.|.+.+||||+..... ........+|.+|+|+.+...........++.+...+.+++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 5789999999986653 23344578999999999988877888888888888888866 678999964
No 479
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.75 E-value=0.049 Score=58.64 Aligned_cols=86 Identities=12% Similarity=-0.015 Sum_probs=52.0
Q ss_pred CceeEEEEcCCCCCCcHHH-HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh----cCCCE-EEEEeCcCCCCCCHHH
Q psy5021 75 FKYMINIIDTPGHVDFTIE-VERSLRVLDGAVIIICASSGIQPQTETVWFQSQK----YKVPK-MIFVNKMDRIGANYNN 148 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~-~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~----~~~p~-iiviNK~D~~~~~~~~ 148 (1021)
..|.+.+|||||....... .......+|.+|+++.+...-...+..+++.+.. .+.++ -+++|+.+. ....+
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~--~~~~~ 194 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT--DREDE 194 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC--TTHHH
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc--hhHHH
Confidence 3688999999996432111 1123367999999998764333333333333322 36664 467899873 23456
Q ss_pred HHHHHHHHhCCcee
Q psy5021 149 CIIDIKKKFNCIVL 162 (1021)
Q Consensus 149 ~~~~i~~~l~~~~~ 162 (1021)
..+++.+.++....
T Consensus 195 ~~~~l~~~~g~~~l 208 (289)
T 2afh_E 195 LIIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHHTSCEE
T ss_pred HHHHHHHHcCcccc
Confidence 67778777876543
No 480
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.71 E-value=0.0081 Score=65.91 Aligned_cols=125 Identities=18% Similarity=0.136 Sum_probs=65.3
Q ss_pred cceeeeeeeeeccchhhhhhhcccccccccccccccc-ccCC-chh------hhhcCceEeeeEEEE-------------
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFD-TIDN-APE------EKERGITISTSHVEY------------- 709 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~-~~d~-~~~------e~~~G~Ti~~~~~~~------------- 709 (1021)
....+++|.+++||||+++.|.+.....+ +...... -+.+ ... -+..|+.+-......
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~-g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHG-FSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC-CEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 34668899999999999999986432211 1111000 0001 011 122333221110000
Q ss_pred eeCCeEEEEEecCChhh----hHHHHHH--HhhhCCEEEEEEECCCCCcHHHHHHHHHHH-HcCCCeEEEEEeecccc
Q psy5021 710 ESENKHYAHVDCPGHAD----YIKNMIT--GAAQMDGAILVCSAVDGPMPQTREHILLAR-QVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 710 ~~~~~~i~liDtpG~~~----~~~~~~~--~~~~aD~ailVvDa~~g~~~qt~e~l~~~~-~~~ip~iIvviNK~Dl~ 780 (1021)
...+..+.++||+|... +...... .+-.+|-.++++|+..+. +..+.+.... ..++. ++++||+|..
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it--~iilTKlD~~ 281 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKID--GIILTKLDAD 281 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCC--EEEEECGGGC
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCC--EEEEeCcCCc
Confidence 01245677899999533 2222211 123579999999988753 3333343333 45665 4577999964
No 481
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.65 E-value=0.034 Score=59.06 Aligned_cols=85 Identities=12% Similarity=-0.063 Sum_probs=52.0
Q ss_pred ceeEEEEcCCCCCCcHHH-HHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh----cCCCE-EEEEeCcCCCCCCHHHH
Q psy5021 76 KYMINIIDTPGHVDFTIE-VERSLRVLDGAVIIICASSGIQPQTETVWFQSQK----YKVPK-MIFVNKMDRIGANYNNC 149 (1021)
Q Consensus 76 ~~~i~liDtPG~~~f~~~-~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~----~~~p~-iiviNK~D~~~~~~~~~ 149 (1021)
.|.+.+|||||....... .......+|.+|+|+.+.......+..+++.+.. .++++ -+++|+.+.. . ..+.
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~-~-~~~~ 192 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA-N-EYEL 192 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS-C-CHHH
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc-h-hHHH
Confidence 588999999996432111 1122357999999998764333333334444432 35665 4679998742 2 2566
Q ss_pred HHHHHHHhCCcee
Q psy5021 150 IIDIKKKFNCIVL 162 (1021)
Q Consensus 150 ~~~i~~~l~~~~~ 162 (1021)
.+++.+.++....
T Consensus 193 ~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 193 LDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHTCCEE
T ss_pred HHHHHHHcCCccc
Confidence 7778777876543
No 482
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.61 E-value=0.037 Score=61.13 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=46.6
Q ss_pred hhhCCEEEEEEECCCCCc--HHHHHHHHHHHHcCCCeEEEEEeeccccchhhHHHHHHHHHHHhhhccccCCCceEEEEe
Q psy5021 735 AAQMDGAILVCSAVDGPM--PQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIG 812 (1021)
Q Consensus 735 ~~~aD~ailVvDa~~g~~--~qt~e~l~~~~~~~ip~iIvviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ii~i 812 (1021)
+.++|.+++|. |..+.+ ......+..+...++| .++|+||+|+.+++. .+.+ +++...++..|+ +++++
T Consensus 128 ~anvD~v~iv~-a~~P~~~~~~i~r~L~~a~~~~~~-~iivlNK~DL~~~~~-~~~~-~~~~~~y~~~G~-----~v~~~ 198 (358)
T 2rcn_A 128 AANIDQIVIVS-AILPELSLNIIDRYLVGCETLQVE-PLIVLNKIDLLDDEG-MDFV-NEQMDIYRNIGY-----RVLMV 198 (358)
T ss_dssp EECCCEEEEEE-ESTTTCCHHHHHHHHHHHHHHTCE-EEEEEECGGGCCHHH-HHHH-HHHHHHHHTTTC-----CEEEC
T ss_pred HhcCCEEEEEE-eCCCCCCHHHHHHHHHHHHhcCCC-EEEEEECccCCCchh-HHHH-HHHHHHHHhCCC-----cEEEE
Confidence 47899999765 444433 2223445556677998 678899999987432 1112 223334455565 57889
Q ss_pred cccccc
Q psy5021 813 SALLAL 818 (1021)
Q Consensus 813 Sa~~~~ 818 (1021)
||.++.
T Consensus 199 Sa~~~~ 204 (358)
T 2rcn_A 199 SSHTQD 204 (358)
T ss_dssp BTTTTB
T ss_pred ecCCCc
Confidence 998763
No 483
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=95.41 E-value=0.018 Score=65.38 Aligned_cols=91 Identities=15% Similarity=0.050 Sum_probs=55.9
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCc-------hhHHHHHHHHhhcCCC-----EEEEEeCcCCC
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQ-------PQTETVWFQSQKYKVP-----KMIFVNKMDRI 142 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~-------~~t~~~~~~~~~~~~p-----~iiviNK~D~~ 142 (1021)
..|.+.|||||+... ..+..++..+|.+|+|+.+..-.. .....+++.+...+.+ ++.++|+.|..
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~ 323 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGK 323 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---C
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCc
Confidence 357899999999775 567888999999999997643211 1223344445544433 35689999832
Q ss_pred CCCHHHHHHHHHHHhCCceeeeeeec
Q psy5021 143 GANYNNCIIDIKKKFNCIVLPINFNI 168 (1021)
Q Consensus 143 ~~~~~~~~~~i~~~l~~~~~~~~~p~ 168 (1021)
..-....+.+.+.+|...+...+|.
T Consensus 324 -~~~~~~~~~~~~~~g~~vl~~~IP~ 348 (403)
T 3ez9_A 324 -RDHETSHSLAREVYASNILDSSLPR 348 (403)
T ss_dssp -HHHHHHHHHHHHHHTTSEECCC---
T ss_pred -hhHHHHHHHHHHHhhHhhhceeCCc
Confidence 2234566778888887665445553
No 484
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.28 E-value=0.047 Score=59.14 Aligned_cols=147 Identities=12% Similarity=0.130 Sum_probs=73.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc-CCcccccChHHH------hhhCceeeeeeeE-EEe-----ec-
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH-HGTTITDWMQQE------QERGITITSASVS-IFW-----EV- 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~-~~~~~~d~~~~e------~~rgiTi~~~~~~-~~~-----~~- 72 (1021)
.-..++++|+.|+|||||+..|...... ..|++. .+.........| ..+++.+-..... +.. +.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l 176 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 176 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHH
Confidence 3467999999999999999998743211 112221 010000000001 1234544332211 100 00
Q ss_pred ---ccCceeEEEEcCCCCCCcHHHHH-------HHh-----hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEe
Q psy5021 73 ---NKFKYMINIIDTPGHVDFTIEVE-------RSL-----RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVN 137 (1021)
Q Consensus 73 ---~~~~~~i~liDtPG~~~f~~~~~-------~~l-----~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviN 137 (1021)
...++...++||.|...+..... .++ ...+-+++++|++.|...... ..+.....++ .+++++
T Consensus 177 ~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~-~~~~~~~~g~-t~iiiT 254 (302)
T 3b9q_A 177 KRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGI-TGLILT 254 (302)
T ss_dssp HHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCC-CEEEEE
T ss_pred HHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH-HHHHHHhcCC-CEEEEe
Confidence 01134467899999865533221 121 235667999998887655433 2222223454 467789
Q ss_pred CcCCCCCCHHHHHHHHHHHhCC
Q psy5021 138 KMDRIGANYNNCIIDIKKKFNC 159 (1021)
Q Consensus 138 K~D~~~~~~~~~~~~i~~~l~~ 159 (1021)
|+|-. +.....+ ++...++.
T Consensus 255 hlD~~-~~~g~~l-~~~~~~~~ 274 (302)
T 3b9q_A 255 KLDGS-ARGGCVV-SVVEELGI 274 (302)
T ss_dssp CCSSC-SCTHHHH-HHHHHHCC
T ss_pred CCCCC-CccChhe-ehHHHHCC
Confidence 99864 3333333 34444444
No 485
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=95.22 E-value=0.037 Score=58.47 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=58.2
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhh------cCCCEE-EEEeCcCCCCCCHH
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK------YKVPKM-IFVNKMDRIGANYN 147 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~------~~~p~i-iviNK~D~~~~~~~ 147 (1021)
..|.+.+||||+... .....++..+|.+|+++.+.......+...++.+.. .+++++ +++|+.|.......
T Consensus 110 ~~yD~iiiD~pp~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~ 187 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLS--PLTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ 187 (257)
T ss_dssp TTCSEEEEECCSSCC--HHHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH
T ss_pred cCCCEEEEeCCCCCC--HHHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH
Confidence 468899999999765 345677889999999999875433333334333321 356765 78999987544345
Q ss_pred HHHHHHHHHhCCce
Q psy5021 148 NCIIDIKKKFNCIV 161 (1021)
Q Consensus 148 ~~~~~i~~~l~~~~ 161 (1021)
+..+.+++.++...
T Consensus 188 ~~~~~l~~~~~~~~ 201 (257)
T 1wcv_1 188 QVEAQLRAHFGEKV 201 (257)
T ss_dssp HHHHHHHHHHGGGB
T ss_pred HHHHHHHHHccccc
Confidence 66777887776543
No 486
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.97 E-value=0.027 Score=61.11 Aligned_cols=126 Identities=21% Similarity=0.207 Sum_probs=63.5
Q ss_pred cceeeeeeeeeccchhhhhhhcccccccccccccccc-ccCCch-hh------hhcCceEeeeEEE----------E---
Q psy5021 651 SNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFD-TIDNAP-EE------KERGITISTSHVE----------Y--- 709 (1021)
Q Consensus 651 ~~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~-~~d~~~-~e------~~~G~Ti~~~~~~----------~--- 709 (1021)
.-..+++|.+++|||||++.|.+..... ++...... -+.+.. .+ ...++.+-..... +
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3577899999999999999997543211 11111000 000100 00 1122222111000 0
Q ss_pred eeCCeEEEEEecCChhhhHHHHHH-------Hh-----hhCCEEEEEEECCCCCcHHHHHHHH-HHHHcCCCeEEEEEee
Q psy5021 710 ESENKHYAHVDCPGHADYIKNMIT-------GA-----AQMDGAILVCSAVDGPMPQTREHIL-LARQVGVPNIVVFLNK 776 (1021)
Q Consensus 710 ~~~~~~i~liDtpG~~~~~~~~~~-------~~-----~~aD~ailVvDa~~g~~~qt~e~l~-~~~~~~ip~iIvviNK 776 (1021)
...+..+.++||+|.......... .+ ..++.+++++|+..+.. ..+.+. +....++. ++++||
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~t--~iivTh 256 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGLT--GVIVTK 256 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCCS--EEEEEC
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCCc--EEEEEC
Confidence 012345679999995332111111 11 24788999999987643 233333 23345776 456799
Q ss_pred ccccc
Q psy5021 777 ADCVQ 781 (1021)
Q Consensus 777 ~Dl~~ 781 (1021)
.|...
T Consensus 257 ~d~~a 261 (304)
T 1rj9_A 257 LDGTA 261 (304)
T ss_dssp TTSSC
T ss_pred Ccccc
Confidence 99653
No 487
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.77 E-value=0.02 Score=62.52 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=38.3
Q ss_pred CCeEEEEEecCChhhhHHHHHHHh------------hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccc
Q psy5021 712 ENKHYAHVDCPGHADYIKNMITGA------------AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADC 779 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~~~~~~~~~~------------~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl 779 (1021)
.++.+.|+||||........+..+ ..+|.+++|+|+..+ ..+.+.+.... ...+-.=+++||+|.
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~-~~~~i~GvVltk~d~ 266 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFS-KVADVSGIILTKMDS 266 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHT-TTSCCCEEEEECGGG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHh-hcCCCcEEEEeCCCC
Confidence 467899999999654322222111 237999999999854 22222222111 123322357899996
Q ss_pred cc
Q psy5021 780 VQ 781 (1021)
Q Consensus 780 ~~ 781 (1021)
..
T Consensus 267 ~~ 268 (320)
T 1zu4_A 267 TS 268 (320)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 488
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.67 E-value=0.065 Score=59.31 Aligned_cols=148 Identities=12% Similarity=0.124 Sum_probs=73.6
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHcCCCccccccc-CCcccccChHHH------hhhCceeeeeeeE-EEe-----ec-
Q psy5021 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH-HGTTITDWMQQE------QERGITITSASVS-IFW-----EV- 72 (1021)
Q Consensus 7 ~irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~-~~~~~~d~~~~e------~~rgiTi~~~~~~-~~~-----~~- 72 (1021)
.-..++++|+.|+|||||+..|...... ..|++. .+.........| ..+++.+-..... +.. ..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l 233 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 233 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHH
Confidence 3467999999999999999998753211 112221 010000000001 1234444322111 000 00
Q ss_pred ---ccCceeEEEEcCCCCCCcHHHHH-------HHh-----hccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEEEEEe
Q psy5021 73 ---NKFKYMINIIDTPGHVDFTIEVE-------RSL-----RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVN 137 (1021)
Q Consensus 73 ---~~~~~~i~liDtPG~~~f~~~~~-------~~l-----~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~iiviN 137 (1021)
...++...++||.|...+..... .++ ...+-+++|+|++.|...... ........++ .+++++
T Consensus 234 ~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~-~~~~~~~~g~-t~iiiT 311 (359)
T 2og2_A 234 KRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGI-TGLILT 311 (359)
T ss_dssp HHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCC-CEEEEE
T ss_pred HHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH-HHHHHHhcCC-eEEEEe
Confidence 01134467999999865532211 111 235677999998877655433 2122223454 467799
Q ss_pred CcCCCCCCHHHHHHHHHHHhCCc
Q psy5021 138 KMDRIGANYNNCIIDIKKKFNCI 160 (1021)
Q Consensus 138 K~D~~~~~~~~~~~~i~~~l~~~ 160 (1021)
|+|-. +..-.. -++...++.+
T Consensus 312 hlD~~-~~gG~~-lsi~~~~~~p 332 (359)
T 2og2_A 312 KLDGS-ARGGCV-VSVVEELGIP 332 (359)
T ss_dssp SCTTC-SCTHHH-HHHHHHHCCC
T ss_pred cCccc-ccccHH-HHHHHHhCCC
Confidence 99864 333333 3344445543
No 489
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.36 E-value=0.077 Score=58.55 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=30.5
Q ss_pred HhhccCeEEEEEeCCCCCchhH---HHHHHHHhhcCCCEEEEEeCcCCCC
Q psy5021 97 SLRVLDGAVIIICASSGIQPQT---ETVWFQSQKYKVPKMIFVNKMDRIG 143 (1021)
Q Consensus 97 ~l~~~D~~ilvvda~~g~~~~t---~~~~~~~~~~~~p~iiviNK~D~~~ 143 (1021)
.+..+|.+++| ||..+ .... .+.+..+...++|+++|+||+|+..
T Consensus 127 i~anvD~v~iv-~a~~P-~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~ 174 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILP-ELSLNIIDRYLVGCETLQVEPLIVLNKIDLLD 174 (358)
T ss_dssp EEECCCEEEEE-EESTT-TCCHHHHHHHHHHHHHHTCEEEEEEECGGGCC
T ss_pred HHhcCCEEEEE-EeCCC-CCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 35788999876 55543 2222 2334445567999999999999863
No 490
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.31 E-value=0.032 Score=60.45 Aligned_cols=66 Identities=23% Similarity=0.240 Sum_probs=37.5
Q ss_pred CCeEEEEEecCChhhhHHHH-------HHHh-----hhCCEEEEEEECCCCCcHHHHHHHH-HHHHcCCCeEEEEEeecc
Q psy5021 712 ENKHYAHVDCPGHADYIKNM-------ITGA-----AQMDGAILVCSAVDGPMPQTREHIL-LARQVGVPNIVVFLNKAD 778 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~~~~~~-------~~~~-----~~aD~ailVvDa~~g~~~qt~e~l~-~~~~~~ip~iIvviNK~D 778 (1021)
.+..+.++||||........ ...+ ..+|.+++|+|+..+ ....+.+. .....++. -+++||+|
T Consensus 185 ~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i~--gvVlTk~D 260 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNVT--GIILTKLD 260 (306)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCCC--EEEEECGG
T ss_pred cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCCC--EEEEeCCC
Confidence 45679999999953322221 1122 137899999999743 11222222 22234555 34679999
Q ss_pred ccc
Q psy5021 779 CVQ 781 (1021)
Q Consensus 779 l~~ 781 (1021)
...
T Consensus 261 ~~~ 263 (306)
T 1vma_A 261 GTA 263 (306)
T ss_dssp GCS
T ss_pred Ccc
Confidence 654
No 491
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=94.14 E-value=0.089 Score=54.54 Aligned_cols=82 Identities=12% Similarity=0.095 Sum_probs=58.9
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCE-EEEEeCcCCCCCCHHHHHHHH
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPK-MIFVNKMDRIGANYNNCIIDI 153 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~-iiviNK~D~~~~~~~~~~~~i 153 (1021)
..|.+.+||||+... ..+..++..+|.+|+|+++.......+...++.+...+.+. -+++||.|..... ..++++
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~ 185 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRD--IPPEAA 185 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTC--CCHHHH
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccch--hHHHHH
Confidence 357899999999765 66778899999999999887554455666677776667655 4679999965432 234556
Q ss_pred HHHhCCc
Q psy5021 154 KKKFNCI 160 (1021)
Q Consensus 154 ~~~l~~~ 160 (1021)
.+.++..
T Consensus 186 ~~~~~~~ 192 (237)
T 1g3q_A 186 EDVMEVP 192 (237)
T ss_dssp HHHHCSC
T ss_pred HHHhCcc
Confidence 6666654
No 492
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.86 E-value=0.038 Score=62.60 Aligned_cols=65 Identities=23% Similarity=0.283 Sum_probs=38.6
Q ss_pred CCeEEEEEecCChhhh----HHHH--HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHH-HcCCCeEEEEEeecccc
Q psy5021 712 ENKHYAHVDCPGHADY----IKNM--ITGAAQMDGAILVCSAVDGPMPQTREHILLAR-QVGVPNIVVFLNKADCV 780 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~~----~~~~--~~~~~~aD~ailVvDa~~g~~~qt~e~l~~~~-~~~ip~iIvviNK~Dl~ 780 (1021)
.+..+.|+||||.... ...+ +..+..+|.++||+|+..+. .....+.... ..++ .-|++||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f~~~l~i--~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAFDEKVGV--TGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHTCC--CEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHHHhcCCc--eEEEEeCcCCc
Confidence 5678999999995432 2221 12234689999999998652 2222222222 2343 34578999964
No 493
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=93.86 E-value=0.062 Score=61.12 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=22.6
Q ss_pred cccceeeeeeeeeccchhhhhhhccc
Q psy5021 649 LRSNTKGTIGHVDHGKTTLTAALTKV 674 (1021)
Q Consensus 649 l~~~t~g~~g~~~~GKSTLi~~L~~~ 674 (1021)
.+...++++|..++|||||+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45677889999999999999999864
No 494
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=93.80 E-value=0.049 Score=61.68 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=57.2
Q ss_pred CceeEEEEcCCCCCCcHHHHHHHhhccCeEEEEEeCCCCCc-------hhHHHHHHHHhhcC--CC---EEEEEeCcCCC
Q psy5021 75 FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQ-------PQTETVWFQSQKYK--VP---KMIFVNKMDRI 142 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f~~~~~~~l~~~D~~ilvvda~~g~~-------~~t~~~~~~~~~~~--~p---~iiviNK~D~~ 142 (1021)
..|.+.+||||+... ..+..++..+|.+|+|+.+..-.. ......++.+...+ .+ ++.++|+.+..
T Consensus 243 ~~yD~ViiD~pp~~~--~~~~~~l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~ 320 (398)
T 3ez2_A 243 SDYDFILVDSGPHLD--AFLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNK 320 (398)
T ss_dssp TTCSEEEEEECSCCS--HHHHHHHHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSC
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCc
Confidence 368899999999875 457778889999999997743211 11222334444443 33 35578887742
Q ss_pred CCCHHHHHHHHHHHhCCceeeeeeec
Q psy5021 143 GANYNNCIIDIKKKFNCIVLPINFNI 168 (1021)
Q Consensus 143 ~~~~~~~~~~i~~~l~~~~~~~~~p~ 168 (1021)
..-....+.+.+.++...++..+|.
T Consensus 321 -~~~~~~~~~l~~~~g~~vl~~~IP~ 345 (398)
T 3ez2_A 321 -ADHKYCHSLAKEVFGGDMLDVFLPR 345 (398)
T ss_dssp -HHHHHHHHHHHHHHGGGBCSCCEEC
T ss_pred -hhHHHHHHHHHHHhcccccceeccc
Confidence 2234567788888886555444553
No 495
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.71 E-value=0.049 Score=58.82 Aligned_cols=67 Identities=16% Similarity=0.048 Sum_probs=37.6
Q ss_pred CCeEEEEEecCChhhhH----HHHHHHhh--hCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Q psy5021 712 ENKHYAHVDCPGHADYI----KNMITGAA--QMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQ 781 (1021)
Q Consensus 712 ~~~~i~liDtpG~~~~~----~~~~~~~~--~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~Dl~~ 781 (1021)
.+..+.|+||||..... ..+...+. ..|.+++|+|++.+.. ...+........++. -+++||+|...
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~--giVltk~D~~~ 253 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVN--QYIFTKIDETT 253 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCC--EEEEECTTTCS
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCC--EEEEeCCCccc
Confidence 45689999999954432 22222222 3678899999986421 112222222223343 34669999754
No 496
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=93.58 E-value=0.2 Score=51.66 Aligned_cols=87 Identities=13% Similarity=0.034 Sum_probs=59.7
Q ss_pred CceeEEEEcCCCCC-----CcHHHHHHHhhccCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEE-EEEeCcCCCCCCHHH
Q psy5021 75 FKYMINIIDTPGHV-----DFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKM-IFVNKMDRIGANYNN 148 (1021)
Q Consensus 75 ~~~~i~liDtPG~~-----~f~~~~~~~l~~~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~ 148 (1021)
..+.+.+||+||.. +......-+-....-+|+|+++..+-..++...++.+...++++. +++|+++......+.
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~ 188 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSNIKYIDE 188 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSCHHH
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCcchhhHH
Confidence 46789999999742 111112222223356899999988776777777777788899976 468999865445677
Q ss_pred HHHHHHHHhCCce
Q psy5021 149 CIIDIKKKFNCIV 161 (1021)
Q Consensus 149 ~~~~i~~~l~~~~ 161 (1021)
..+.+++.++.++
T Consensus 189 ~~~~l~~~~g~pv 201 (228)
T 3of5_A 189 QINTIEELSGYKC 201 (228)
T ss_dssp HHHHHHHHHSCCC
T ss_pred HHHHHHHhhCCCE
Confidence 7888888887643
No 497
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=93.31 E-value=0.11 Score=45.17 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=60.0
Q ss_pred EEEEEEeecCCCceEEEEEEEeeEEecCCEEEeCCCceee---EeceEEEeecCCeeccccccCCCEEEEe--cCCcccc
Q psy5021 300 SLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKE---KIFRILRMFANSKKDINDAHFGDIVVIV--GLKESST 374 (1021)
Q Consensus 300 ~~V~k~~~~~~~g~~~~~RV~sG~l~~gd~v~~~~~~~~~---~i~~i~~~~g~~~~~v~~a~aGdIv~i~--gl~~~~~ 374 (1021)
|-|-++|..+..|.+|-++|.+|.++++..+...+.+.-. ++..|.+ ....++++.+|.=|+|. +..+++.
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr----~KddV~EV~~G~ECGi~l~~~~dik~ 84 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKR----YKDDVREVAQGYECGLTIKNFNDIKE 84 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEEC----SSSCCSCCBTTCEEEEECTTCSSCSS
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcc----cccccceECCCcEEEEEEcCcCCCCC
Confidence 4455666677889999999999999999999988877432 5555543 35679999999999994 5567899
Q ss_pred CCeec
Q psy5021 375 GDTLC 379 (1021)
Q Consensus 375 gdtl~ 379 (1021)
||.|-
T Consensus 85 GD~Ie 89 (99)
T 1d1n_A 85 GDVIE 89 (99)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 99873
No 498
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.94 E-value=0.14 Score=55.42 Aligned_cols=126 Identities=17% Similarity=0.122 Sum_probs=64.2
Q ss_pred ceeeeeeeeeccchhhhhhhcccccccccccccccc-ccCCch------h-hhhcCceEeeeEEE-E-------------
Q psy5021 652 NTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFD-TIDNAP------E-EKERGITISTSHVE-Y------------- 709 (1021)
Q Consensus 652 ~t~g~~g~~~~GKSTLi~~L~~~~~~~~~~~~~~~~-~~d~~~------~-e~~~G~Ti~~~~~~-~------------- 709 (1021)
-..+++|..++|||||++.|.+..... ++...... -+.+.. . ....++.+-..... .
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~ 179 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 179 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHH
Confidence 467899999999999999998643211 12211100 011110 0 01123333221111 0
Q ss_pred eeCCeEEEEEecCChhhhHHHH-------HHHh-----hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeec
Q psy5021 710 ESENKHYAHVDCPGHADYIKNM-------ITGA-----AQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKA 777 (1021)
Q Consensus 710 ~~~~~~i~liDtpG~~~~~~~~-------~~~~-----~~aD~ailVvDa~~g~~~qt~e~l~~~~~~~ip~iIvviNK~ 777 (1021)
...+....++|++|...+.... ...+ ..++-+++|+|++.|...... ...+....++. ++++||+
T Consensus 180 ~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~-~~~~~~~~g~t--~iiiThl 256 (302)
T 3b9q_A 180 KEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGIT--GLILTKL 256 (302)
T ss_dssp HHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCCC--EEEEECC
T ss_pred HHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH-HHHHHHhcCCC--EEEEeCC
Confidence 0123446789999954332211 1111 246777999998776543322 12223345776 4567999
Q ss_pred cccc
Q psy5021 778 DCVQ 781 (1021)
Q Consensus 778 Dl~~ 781 (1021)
|-..
T Consensus 257 D~~~ 260 (302)
T 3b9q_A 257 DGSA 260 (302)
T ss_dssp SSCS
T ss_pred CCCC
Confidence 9653
No 499
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.84 E-value=0.03 Score=64.91 Aligned_cols=105 Identities=10% Similarity=0.003 Sum_probs=56.9
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHcCCCcccccccCCcccccChHH-HhhhCceeeeeeeEEEeecccCceeEEEEcCCC
Q psy5021 8 FRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQ-EQERGITITSASVSIFWEVNKFKYMINIIDTPG 86 (1021)
Q Consensus 8 irni~iiG~~~~GKTTL~~~Ll~~~~~~~~~g~~~~~~~~~d~~~~-e~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 86 (1021)
-.+|.++|.+|+||||+..+|....+.... + +...+.... +...|. .....++|+.|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~----~--t~~~~~d~~r~~~~g~----------------~~~~~ifd~~g 96 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGV----P--TREFNVGQYRRDMVKT----------------YKSFEFFLPDN 96 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC----C--EEEEEHHHHHHHHHCS----------------CCCGGGGCTTC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCC----C--ceEEecchhhhhhccC----------------CCcccccCCCC
Confidence 458999999999999999999643221000 0 000000000 000010 11224678888
Q ss_pred CCCc--HHHH--------HHHhhccCeEEEEEeCCCCCchhHHHHH-HHHhhcCCCEEEE
Q psy5021 87 HVDF--TIEV--------ERSLRVLDGAVIIICASSGIQPQTETVW-FQSQKYKVPKMIF 135 (1021)
Q Consensus 87 ~~~f--~~~~--------~~~l~~~D~~ilvvda~~g~~~~t~~~~-~~~~~~~~p~iiv 135 (1021)
...| ...+ ..++..+++.++|+|++..- ...+..| ..+++.+.+++++
T Consensus 97 ~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~-~~~R~~~~~~~~~~~~~vv~l 155 (469)
T 1bif_A 97 EEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTT-RERRAMIFNFGEQNGYKTFFV 155 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCCS-HHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHHHHHHHHhcCCcEEEE
Confidence 6322 2222 44455578889999999864 4344444 5556666665544
No 500
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=92.75 E-value=0.52 Score=48.11 Aligned_cols=94 Identities=6% Similarity=-0.051 Sum_probs=60.9
Q ss_pred CceeEEEEcCCCCCCc--HH--HHHHHhhc-cCeEEEEEeCCCCCchhHHHHHHHHhhcCCCEE-EEEeCcCCCCCCHHH
Q psy5021 75 FKYMINIIDTPGHVDF--TI--EVERSLRV-LDGAVIIICASSGIQPQTETVWFQSQKYKVPKM-IFVNKMDRIGANYNN 148 (1021)
Q Consensus 75 ~~~~i~liDtPG~~~f--~~--~~~~~l~~-~D~~ilvvda~~g~~~~t~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~ 148 (1021)
..|.+.+|||||...- .. .....+.. .+.+|+|+++..+-..++...++.++..+++++ +++|+.|.......+
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~ 186 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAE 186 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHH
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHH
Confidence 3688999999986531 00 11111122 235888888865545556666677777788866 678999975555677
Q ss_pred HHHHHHHHhCCceeeeeeecc
Q psy5021 149 CIIDIKKKFNCIVLPINFNIG 169 (1021)
Q Consensus 149 ~~~~i~~~l~~~~~~~~~p~~ 169 (1021)
..+.+.+.++...+ -.+|..
T Consensus 187 ~~~~l~~~~~~~vl-~~Ip~~ 206 (224)
T 1byi_A 187 YMTTLTRMIPAPLL-GEIPWL 206 (224)
T ss_dssp HHHHHHHHSSSCEE-EEECCC
T ss_pred HHHHHHHHcCCCEE-EECCCC
Confidence 78888888876554 245543
Done!