RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5021
(1021 letters)
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 938 bits (2428), Expect = 0.0
Identities = 295/662 (44%), Positives = 444/662 (67%), Gaps = 19/662 (2%)
Query: 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV 66
RNIGI+AH+DAGKTTTTERIL+Y+G HKIGE H G + DWM+QEQ+RGITITSA+
Sbjct: 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAAT 68
Query: 67 SIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQ 126
+ WE + +NIIDTPGHVDFT+EVERSLRVLDGAV ++ A SG++PQTETVW Q+
Sbjct: 69 TAAWE----GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT 124
Query: 127 KYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSF 186
Y VP+++FVNKMD++GAN+ + + + PI IG E+ +E I+D++ K F
Sbjct: 125 TYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCF 184
Query: 187 FWKEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN-YSINDIKNSI 242
+ + I I +D L + ++E ++ + +EKY+ + S++++K +I
Sbjct: 185 KYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAI 244
Query: 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV------DFKNNDYNINLNSN 296
R+ + P++CG++ KNKG++ +L+++ +YLPSP DV N + + ++
Sbjct: 245 RQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKAD 304
Query: 297 ---KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKK 353
+F +L FK+ DP++G L+F R+YSG + G V NSTK +E++ R+L+M ANS++
Sbjct: 305 DSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQ 364
Query: 354 DINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQEKLL 413
+I+ + GDI VGLK++ TGDTLC +I LE++E P PVI +S+EP K DQ+K+
Sbjct: 365 EIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDKMT 424
Query: 414 NILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKE 473
L K +EDP+ + TG+ I+ GMGELHL+I+VDR+ KE N++ + P VSY+E
Sbjct: 425 QALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYRE 484
Query: 474 SIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIE 533
+ K +GK+ +QSGG+GQYG V I P E F F++ I+GG +P+E+IP++E
Sbjct: 485 TFKSSAQVQGKFSRQSGGRGQYGDVHIEFTP--NETGAGFEFENAIVGGVVPREYIPSVE 542
Query: 534 KGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILE 593
G+ + + GV+ GYP+I +K L +GS+H VDSSE AFK AA++ALK+A KK + ILE
Sbjct: 543 AGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILE 602
Query: 594 PIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNT 653
P+MKV + +P E++G ++GD+ +RG ++ + N +++N+Y+PL E+FGY+T LRSNT
Sbjct: 603 PMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRSNT 662
Query: 654 KG 655
+G
Sbjct: 663 QG 664
Score = 49.0 bits (118), Expect = 7e-06
Identities = 48/140 (34%), Positives = 65/140 (46%), Gaps = 31/140 (22%)
Query: 655 GTIGHVDHGKTTLTAAL---TKVSSEIYGGEVRAFD---TIDNAPEEKERGITISTSHVE 708
G + H+D GKTT T + T +I GE + +D +E++RGITI TS
Sbjct: 14 GIMAHIDAGKTTTTERILYYTGRIHKI--GETH--EGASQMDWMEQEQDRGITI-TSAAT 68
Query: 709 YESENKHYAHV-DCPGHADYIKNMITGAAQ-----MDGAILVCSAVDGPMPQT----REH 758
+ H ++ D PGH D+ T + +DGA+ V A G PQT R
Sbjct: 69 TAAWEGHRVNIIDTPGHVDF-----TVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-- 121
Query: 759 ILLARQVGVPNIVVFLNKAD 778
A GVP I VF+NK D
Sbjct: 122 --QATTYGVPRI-VFVNKMD 138
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 933 bits (2413), Expect = 0.0
Identities = 310/661 (46%), Positives = 451/661 (68%), Gaps = 18/661 (2%)
Query: 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV 66
RNIGI AH+DAGKTTTTERIL+Y+G HKIGEVH G D+M+QE+ERGITIT+A
Sbjct: 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVT 70
Query: 67 SIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQ 126
+ FW+ + INIIDTPGHVDFTIEVERS+RVLDGA+++ +S G++PQ+ETVW Q++
Sbjct: 71 TCFWK----DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 127 KYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSF 186
KYKVP++ F NKMD+ GA+ I ++++ + + IG E+ + GI+D++ K++
Sbjct: 127 KYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAY 186
Query: 187 FWKEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINN-NYSINDIKNSI 242
+ + I I ++ L Y+E ++E ++ DE + KY+ + ++ +I
Sbjct: 187 TYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAI 246
Query: 243 RKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV------DFKNNDYNINLNSN 296
RK + KI P+ GS+LKNKG++ LL+++ +YLPSP D+ + I+ + N
Sbjct: 247 RKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPN 306
Query: 297 -KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDI 355
+L FKI DP++G L+FIR+YSG + G VYN+TK KE++ R+LRM AN ++++
Sbjct: 307 GPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEV 366
Query: 356 NDAHFGDIVVIVGLKESSTGDTLCSLSE-NIQLENIETPIPVISISIEPIFKNDQEKLLN 414
+ GD+ +VGLKE+ TGDTL + LE+IE P PVI ++IEP K DQEKL
Sbjct: 367 EELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQ 426
Query: 415 ILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKES 474
L + +EDP+ +S + TG+TI+SGMGELHLEIIVDR+ +E + + KPQV+Y+E+
Sbjct: 427 ALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRET 486
Query: 475 IKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEK 534
I K V EGK+I+Q+GG+GQYGHV I++EP L F F + I+GG IPKE+IPA++K
Sbjct: 487 ITKPVDVEGKFIRQTGGRGQYGHVKIKVEP--LPRGSGFEFVNAIVGGVIPKEYIPAVQK 544
Query: 535 GIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEP 594
GI + G ++G+PV+ IKV L +GS+H VDSSE AFK A ++A+K+A++K + ILEP
Sbjct: 545 GIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEP 604
Query: 595 IMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTK 654
IM+VEV P E++G V+GD+N +RG I + N ++I +++PL E+FGY+TDLRS T+
Sbjct: 605 IMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQ 664
Query: 655 G 655
G
Sbjct: 665 G 665
Score = 49.0 bits (118), Expect = 8e-06
Identities = 48/140 (34%), Positives = 66/140 (47%), Gaps = 31/140 (22%)
Query: 655 GTIGHVDHGKTTLTAAL---TKVSSEIYGGEVRAFD---TIDNAPEEKERGITISTSHVE 708
G H+D GKTT T + T +I GEV + T+D +E+ERGITI T+ V
Sbjct: 16 GIAAHIDAGKTTTTERILYYTGRIHKI--GEVH--EGAATMDFMEQERERGITI-TAAVT 70
Query: 709 YESENKHYAHV-DCPGHADYIKNMITGAAQ-----MDGAILVCSAVDGPMPQT----REH 758
H ++ D PGH D+ T + +DGAI+V + G PQ+ R+
Sbjct: 71 TCFWKDHRINIIDTPGHVDF-----TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ- 124
Query: 759 ILLARQVGVPNIVVFLNKAD 778
A + VP I F NK D
Sbjct: 125 ---AEKYKVPRI-AFANKMD 140
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
50S subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 929 bits (2404), Expect = 0.0
Identities = 318/668 (47%), Positives = 449/668 (67%), Gaps = 19/668 (2%)
Query: 7 YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV 66
+RNIGI AH+DAGKTTTTERILFY+G +HKIGEVH G DWM+QEQERGITITSA+
Sbjct: 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAAT 68
Query: 67 SIFW---EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF 123
+ FW + INIIDTPGHVDFTIEVERS+RVLDGAV++ CA G+QPQ+ETVW
Sbjct: 69 TAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR 128
Query: 124 QSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINK 183
Q+ KYKVP++ FVNKMDR+GAN+ + IK + +P+ IG EE++ G+VD++
Sbjct: 129 QANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKM 188
Query: 184 KSFFWKENS----IIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN-YSINDI 238
K+ W + ++I D + + +++ ++E+ + E +EKY+ + +I
Sbjct: 189 KAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAEI 248
Query: 239 KNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDV------DFKNNDYNIN 292
K ++R+ VL N+II + CGS+ KNKG++ +L+++ +YLPSP DV D
Sbjct: 249 KGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAE 308
Query: 293 LNSN---KFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFA 349
+++ F +L FKI DPF+G+L+F R+YSG + GD V NS K +E+ RI++M A
Sbjct: 309 RHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHA 368
Query: 350 NSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQ 409
N +++I + GDI +GLK+ +TGDTLC I LE +E P PVISI++EP K DQ
Sbjct: 369 NKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIAVEPKTKADQ 428
Query: 410 EKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQV 469
EK+ L + KEDPS + + + +TI++GMGELHL+IIVDR+ +E N++ + KPQV
Sbjct: 429 EKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQV 488
Query: 470 SYKESIKKIVTQ-EGKYIKQSGGKGQYGHVVIRIEPI-SLENKENFIFKSEIIGGSIPKE 527
+Y+E+I++ VT EGK+ KQSGG+GQYGHVVI + P+ N + + F ++I GG IP E
Sbjct: 489 AYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGE 548
Query: 528 FIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKA 587
+IPA++KGI Q+ G + GYPV+ + + L GS+H VDSSE AFK AA+IA K+ KKA
Sbjct: 549 YIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKA 608
Query: 588 NSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYST 647
+LEPIMKVEV P E G V+GD++++RG++ I++ +PL E+FGY+T
Sbjct: 609 KPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYAT 668
Query: 648 DLRSNTKG 655
LRS TKG
Sbjct: 669 QLRSLTKG 676
Score = 49.8 bits (120), Expect = 4e-06
Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 36/146 (24%)
Query: 655 GTIGHVDHGKTTLTAAL---TKVSSEIYGGEVRAFD---TIDNAPEEKERGITIS----T 704
G H+D GKTT T + T V+ +I GEV D T+D +E+ERGITI+ T
Sbjct: 14 GISAHIDAGKTTTTERILFYTGVNHKI--GEVH--DGAATMDWMEQEQERGITITSAATT 69
Query: 705 SHVEYESENKHYAHV---DCPGHADYIKNMITGAAQ-----MDGAILVCSAVDGPMPQT- 755
+ ++ + D PGH D+ T + +DGA++V AV G PQ+
Sbjct: 70 AFWSGMAKQYEPHRINIIDTPGHVDF-----TIEVERSMRVLDGAVMVYCAVGGVQPQSE 124
Query: 756 ---REHILLARQVGVPNIVVFLNKAD 778
R+ A + VP I F+NK D
Sbjct: 125 TVWRQ----ANKYKVPRI-AFVNKMD 145
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 907 bits (2347), Expect = 0.0
Identities = 186/659 (28%), Positives = 338/659 (51%), Gaps = 28/659 (4%)
Query: 1 MKNKVL-YFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGI 59
M + R + ++ H +GKTT TE +L+ +G+ + G V GTT TD+ + +
Sbjct: 1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRT 60
Query: 60 TITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTE 119
T+ + + + + + ++D PG+ DF E+ +L D A++ + A +G+Q TE
Sbjct: 61 TVRTGVAPLLFR----GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE 116
Query: 120 TVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVD 179
W +++ +P+M+ V K+D+ G +Y + D++ I+ PI+ + + G++D
Sbjct: 117 RAWTVAERLGLPRMVVVTKLDK-GGDYYALLEDLRSTLGPIL-PIDLPLYEGGKWVGLID 174
Query: 180 IINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNN-YSINDI 238
+ + K++ ++ + ++ + + +LE + DE LEKY+ + +
Sbjct: 175 VFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEAL 234
Query: 239 KNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKF 298
+ + + V + + P+ S + G+ LL I E LPSP +
Sbjct: 235 EKAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTERF----------GDGPP 284
Query: 299 VSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDA 358
++ VFK+ DPF+G ++++R+Y G +K GD + + + ++ + ++ +A
Sbjct: 285 LAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQ--VRLPHLYVPMGKDLLEVEEA 342
Query: 359 HFGDIVVIVGLKESSTGDTLCSLSENIQLE--NIETPIPVISISIEPIFKNDQEKLLNIL 416
G ++ + + G L + E P P + +++ P + D+ +L L
Sbjct: 343 EAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFARLPDPNVPVALHPKGRTDEARLGEAL 402
Query: 417 QKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIK 476
+K +EDPSL L TGE +L G GELHL +R L++ ++ + S P+V Y+E+IK
Sbjct: 403 RKLLEEDPSLKLERQEETGELLLWGHGELHLATAKER-LQDYGVEVEFSVPKVPYRETIK 461
Query: 477 KIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGI 536
K+ +GKY KQ+GG GQYG V +R+EP + F+ I GG IP ++ AIE+GI
Sbjct: 462 KVAEGQGKYKKQTGGHGQYGDVWLRLEPA-----SEYGFEWRITGGVIPSKYQEAIEEGI 516
Query: 537 MNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIM 596
GV+ G+PV+ K + NGS+H VDSS+ AF+ AA++A K + +A+ +LEPI
Sbjct: 517 KEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIY 576
Query: 597 KVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKG 655
+++V P E +G V+ D+ +RG I + ++++ +PL E+ Y L T G
Sbjct: 577 RLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAEVPLAEVLEYYKALPGLTGG 635
Score = 74.5 bits (184), Expect = 1e-13
Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 11/130 (8%)
Query: 655 GTIGHVDHGKTTLTAAL---TKVSSEIYGGEVRAFD---TIDNAPEEKERGITISTSHVE 708
+GH GKTTLT AL T G V + T D PE K T+ T
Sbjct: 13 ALVGHAGSGKTTLTEALLYKTGAKERR--GRVE--EGTTTTDYTPEAKLHRTTVRTGVAP 68
Query: 709 YESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVP 768
+D PG+ D++ + D A++ SA G T +A ++G+P
Sbjct: 69 LLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLP 128
Query: 769 NIVVFLNKAD 778
+ V + K D
Sbjct: 129 RM-VVVTKLD 137
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 765 bits (1979), Expect = 0.0
Identities = 207/367 (56%), Positives = 279/367 (76%), Gaps = 1/367 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+TK+ +E G + + ++ IDNAPEE+ RGITI+ +HVEY + +
Sbjct: 7 GTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAAR 66
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAH DCPGHADY+KNMITG A +DG ILV +A DGPMPQTREH+LLARQ+GV ++VV++
Sbjct: 67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYV 126
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NKAD VQD E+++LVE+EIRELLTE+ + GE T I++GSAL ALE +D LG S++KL
Sbjct: 127 NKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPE-LGLKSVQKL 185
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
LD +D+ IP P R +KPFL+P+E V+SI GRGTVVTG +ERGI+K G+E E +G+ + I
Sbjct: 186 LDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNI 245
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
+T +TGIEMF K+LD AG+N+G L+R +KRE++ RG V+AK GSI+ + E +VYIL
Sbjct: 246 RTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYIL 305
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
+KEEGGRH PF + + P + T D+ LP E+ +PG+++KL + L + +E G
Sbjct: 306 TKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKG 365
Query: 1015 LRFAIRE 1021
RF +R+
Sbjct: 366 QRFTLRD 372
Score = 61.8 bits (151), Expect = 4e-10
Identities = 44/142 (30%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T I + + I D +E+ RGITI +A V
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKIL-AEGGGAKFKKYEEI-DNAPEERARGITINAAHVE-- 60
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRV---------LDGAVIIICASSGIQPQT-E 119
+ Y D PGH D+ V LDG ++++ A+ G PQT E
Sbjct: 61 YSTAARHYA--HTDCPGHADY---------VKNMITGTAPLDGCILVVAANDGPMPQTRE 109
Query: 120 TVWFQSQKYKVPKMI-FVNKMD 140
+ Q V ++ +VNK D
Sbjct: 110 HLLLARQ-IGVEHVVVYVNKAD 130
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 759 bits (1963), Expect = 0.0
Identities = 250/376 (66%), Positives = 293/376 (77%), Gaps = 9/376 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGG-EVRAFDTIDNAPEEKERGITISTSHVEYESEN 713
GTIGHVDHGKTTLTAALT V++ EV+ + ID APEE+ RGITI+T+HVEYE+
Sbjct: 15 GTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 74
Query: 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVF 773
+HY+HVDCPGHADYIKNMITGAAQMDGAILV SA DGPMPQTREHILLARQVGVP IVVF
Sbjct: 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 134
Query: 774 LNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDN-------QL 826
+NK D V D ELLDLVEME+R+LL +Y+F G+ ++ GSALLALE N
Sbjct: 135 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 194
Query: 827 GTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIE 886
I +LLD +D IPTP R DKPFLMP+EDVF+I+GRGTV TG+IERG VK G+E+E
Sbjct: 195 WVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVE 254
Query: 887 IVGYKQ-TIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYN 945
IVG T KT +TG+EM +KTL EG+AG+NVG+LLR V REEVERGQVLAK GSI +
Sbjct: 255 IVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHT 314
Query: 946 IFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTL 1005
FE VY+L KEEGGRHT FF+GY+PQFYFRTTDVTG+ +LP VEMV+PGDN+ V L
Sbjct: 315 KFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVEL 374
Query: 1006 LSSIAIEIGLRFAIRE 1021
+ +A+E GLRFAIRE
Sbjct: 375 IKPVALEEGLRFAIRE 390
Score = 63.0 bits (154), Expect = 2e-10
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 26/142 (18%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T + + + + + EV I D +E+ RGITI +A V
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI-DKAPEERARGITINTAHVE-- 69
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRV---------LDGAVIIICASSGIQPQT-E 119
+E K Y +D PGH D+ + +DGA++++ A+ G PQT E
Sbjct: 70 YETAKRHYS--HVDCPGHADY---------IKNMITGAAQMDGAILVVSAADGPMPQTRE 118
Query: 120 TVWFQSQKYKVPKMI-FVNKMD 140
+ Q VP ++ F+NK+D
Sbjct: 119 HILLARQ-VGVPYIVVFMNKVD 139
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 783 bits (2023), Expect = 0.0
Identities = 268/367 (73%), Positives = 309/367 (84%), Gaps = 3/367 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+T V ++ YGG RAFD IDNAPEEK RGITI+TSHVEY++ +
Sbjct: 300 GTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTR 359
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAHVDCPGHADY+KNMITGAAQMDGAILV +A DGPMPQTREHILL RQVGVP I+VFL
Sbjct: 360 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFL 419
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NK D V D+ELL+LVEME+RELL++YDF G++T IV GSAL ALEG + I +L
Sbjct: 420 NKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAE---WEAKILEL 476
Query: 835 LDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTI 894
LDS IP P R DKPFL+PIEDVFSISGRGTVVTG++ERGI+K GEE+EIVG K+T
Sbjct: 477 AGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQ 536
Query: 895 KTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYIL 954
K+T TG+EMF+K LDEG AGENVG+LLR +KREE+ERGQVLAK G+IK + FE EVYIL
Sbjct: 537 KSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYIL 596
Query: 955 SKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
SK+EGGRHTPFF GY+PQFYFRTTDVTG +LPE VEMV+PGDNIK+ VTL+ IA++ G
Sbjct: 597 SKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDG 656
Query: 1015 LRFAIRE 1021
LRFAIRE
Sbjct: 657 LRFAIRE 663
Score = 64.2 bits (156), Expect = 2e-10
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 37/147 (25%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQ-----QEQERGITITSA 64
N+G I HVD GKTT T I + +G + Q +E+ RGITI ++
Sbjct: 298 NVGTIGHVDHGKTTLTAAIT-------TVLAKTYGGAARAFDQIDNAPEEKARGITINTS 350
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRV---------LDGAVIIICASSGIQ 115
V ++ Y +D PGH D+ V +DGA++++ A+ G
Sbjct: 351 HVE--YDTPTRHYA--HVDCPGHADY---------VKNMITGAAQMDGAILVVAATDGPM 397
Query: 116 PQT-ETVWFQSQKYKVPKMI-FVNKMD 140
PQT E + Q VP +I F+NK D
Sbjct: 398 PQTREHILLGRQ-VGVPYIIVFLNKCD 423
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 551 bits (1423), Expect = 0.0
Identities = 70/369 (18%), Positives = 152/369 (41%), Gaps = 16/369 (4%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
G+ H H + L + +++ G ++ T A ++G + + + E +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMANVAIIGTEKSGRT-SLAANLGKKGTSSDITMYNNDKEGR 60
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
+ VD + +K++IT D A+L G T E I+ +G + ++ L
Sbjct: 61 NMVFVDAHSYPKTLKSLITALNISDIAVLCIPP-QGLDAHTGECIIALDLLGFKHGIIAL 119
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
++D +D ++ +++ + + + + + + + + G +K
Sbjct: 120 TRSDST-HMHAIDELKAKLKVITSGTVLQD--WECISLNTNKSAKNPFE---GVDELKAR 173
Query: 835 LDVLDSSIPTPNRITDK-PFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQT 893
++ + I N + P + I+ F+++G+G VV G +++GI K+ ++ +I +
Sbjct: 174 INEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDR- 232
Query: 894 IKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKSYNIFECEVYI 953
I I+ +D AG VG+ L++V+ +++ERG +++ + + EC V
Sbjct: 233 -DIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISDKEIVTTDYTLECTVSK 291
Query: 954 LSKE-EGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIE 1012
+K+ E F G + + V I VE PG L ++ +A
Sbjct: 292 FTKKIEPASVLHLFVGLQSE----PVRVEKILVDGNEVEEAKPGSTCVLELSGNKKLAYS 347
Query: 1013 IGLRFAIRE 1021
RF +
Sbjct: 348 KQDRFLLAN 356
Score = 55.3 bits (134), Expect = 5e-08
Identities = 21/145 (14%), Positives = 37/145 (25%), Gaps = 37/145 (25%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSH----KIGEVHHGTTITDWMQQEQERGITITSASV 66
+G H + R GS IG G T ++G +
Sbjct: 1 MGSSHHHHHHSSGLVPR-----GSHMANVAIIGTEKSGR--TSLAANLGKKGTSSDIT-- 51
Query: 67 SIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRV---------LDGAVIIICASSGIQPQ 117
+ +K + +D + + D AV+ I G+
Sbjct: 52 --MYNNDKEGRNMVFVDAHSYPKT---------LKSLITALNISDIAVLCI-PPQGLDAH 99
Query: 118 T-ETVWFQSQKYKVPKMI-FVNKMD 140
T E + I + + D
Sbjct: 100 TGECIIALDL-LGFKHGIIALTRSD 123
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 540 bits (1392), Expect = 0.0
Identities = 103/384 (26%), Positives = 177/384 (46%), Gaps = 51/384 (13%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
G GH+DHGKTTL+ LT+++S D PE ++RGITI ++ EN
Sbjct: 23 GIFGHIDHGKTTLSKVLTEIAS---------TSAHDKLPESQKRGITIDIGFSAFKLENY 73
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
VD PGHAD I+ +++ A +D A++V A +GP QT EH+L+ +P IVV +
Sbjct: 74 RITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVV-I 132
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
K+D E + EM ++ +L + +N+ I+ SA + +L
Sbjct: 133 TKSDNA-GTEEIKRTEMIMKSILQST-HNLKNSSIIPISAKTGFG-----------VDEL 179
Query: 835 LDVLDSSI--PTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQ 892
+++ +++ R T+ F MP++ F I G GTVVTG I +GIVK G+E++++
Sbjct: 180 KNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINM 239
Query: 893 TIKTTITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS-IKSYNIFECEV 951
T + I+ FK+++ E AG+ VG+ ++ V +++ RG +L + +++ + ++
Sbjct: 240 --STKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDTKLQTVDKIVAKI 297
Query: 952 YILSKEEGGRHTPFFNGYKPQFYFR----TTDVTGICKL-----------PENVEMVLPG 996
I F P+ V + + V+ G
Sbjct: 298 KISD--------IFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISG 349
Query: 997 DNIKLNVTLLSSIAIEIGLRFAIR 1020
+ L + E+G R I
Sbjct: 350 NEXYXAFELEEKVLAEVGDRVLIT 373
Score = 67.0 bits (164), Expect = 1e-11
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTI-----TDWMQQEQERGITITSA 64
N+GI H+D GKTT ++ + T I D + + Q+RGITI
Sbjct: 21 NLGIFGHIDHGKTTLSKVL----------------TEIASTSAHDKLPESQKRGITIDIG 64
Query: 65 SVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT-ETVWF 123
+ E Y I ++D PGH D V + ++D A+I++ A G + QT E +
Sbjct: 65 FSAFKLE----NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLI 120
Query: 124 QSQKYKVPKMIFVNKMD 140
+ +P ++ + K D
Sbjct: 121 LDH-FNIPIIVVITKSD 136
Score = 31.2 bits (71), Expect = 1.7
Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 252 IPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKI--FHDP 309
I+ S+ G++ L N I L + + +N + + + F I
Sbjct: 163 SSIIPISAKTGFGVDELKNLIITTLNNAEII--RNTESYFKMP----LDHAFPIKGA--- 213
Query: 310 FLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGD 362
G++ I G +KVGD + + K+ R ++ F K+ + +A GD
Sbjct: 214 --GTVVTGTINKGIVKVGDELKVLPINMSTKV-RSIQYF---KESVMEAKAGD 260
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate
translation, tRNA binding, mRNA bindin binding; HET: GCP
GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A*
3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A*
3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 519 bits (1340), Expect = e-177
Identities = 92/397 (23%), Positives = 156/397 (39%), Gaps = 55/397 (13%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAF---DTIDNAPEEKERGITISTSHVEYES 711
G +GHVDHGKTTL A+T + + G PE + + + E
Sbjct: 12 GVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEP 71
Query: 712 ENK-HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-PMPQTREHILLARQVGVPN 769
+ + +D PGH + M++GAA MDGAILV +A + P PQTREH + +GV N
Sbjct: 72 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKN 131
Query: 770 IVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTT 829
+++ NK D V +E L + EN I+ SAL +
Sbjct: 132 LIIVQNKVDVVSKEEALSQYRQIKQFT---KGTWAENVPIIPVSALHKIN---------- 178
Query: 830 SIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISG--------RGTVVTGKIERGIVKN 881
I L++ ++ I TP R + +M + F ++ +G V+ G I +G+ K
Sbjct: 179 -IDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKV 237
Query: 882 GEEIEIVGYKQT----------IKTTITGIEMFKKTLDEGLAGENVGI---LLRSVKREE 928
+EI+++ + I T I+ I + E G V I L S+ + +
Sbjct: 238 DQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKAD 297
Query: 929 VERGQVLAKIGS-IKSYNIFECEVYILSK----EEGGRHTPFFNGYKPQFYFRTTDVTGI 983
G ++ + + + +L + +E + P ++ G
Sbjct: 298 NLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLG- 356
Query: 984 CKLPENVEMVLPGDNIKLNVTLLSSIAIEIG-LRFAI 1019
+V ++ V L +A+ +R I
Sbjct: 357 --------IVTSVKKDEIEVELRRPVAVWSNNIRTVI 385
Score = 54.9 bits (133), Expect = 7e-08
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 12/137 (8%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSG--SSHKIGEVHHGTTITDWMQ--QEQERGITITSAS 65
NIG++ HVD GKTT + I +G +S K+G + + + + + S
Sbjct: 10 NIGVVGHVDHGKTTLVQAI---TGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCG 66
Query: 66 VSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-QPQTETVWFQ 124
+ KF I+ ID PGH + ++DGA++++ A+ QPQT +
Sbjct: 67 SD---DEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVA 123
Query: 125 SQKYKVPKM-IFVNKMD 140
V + I NK+D
Sbjct: 124 LGIIGVKNLIIVQNKVD 140
Score = 29.5 bits (67), Expect = 5.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 252 IPIMCGSSLKNKGIEFLLNSICEYLPSP 279
+PI+ S+L I+ L+ I EY+ +P
Sbjct: 166 VPIIPVSALHKINIDSLIEGIEEYIKTP 193
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 507 bits (1308), Expect = e-172
Identities = 111/418 (26%), Positives = 168/418 (40%), Gaps = 87/418 (20%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN- 713
G +GHVDHGKTTLT ALT V + D EE RGITI + E
Sbjct: 14 GMVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIKIGFADAEIRRC 60
Query: 714 ----------------------KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG- 750
+ + +D PGH + M+ GA+ MDGAILV +A +
Sbjct: 61 PNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPC 120
Query: 751 PMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIV 810
P PQTREH++ + +G NI++ NK + V ++ L+ + EN I+
Sbjct: 121 PRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE---GTVAENAPII 177
Query: 811 IGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGT-- 868
SAL I L+ ++ IPTP R +KP M + F ++ GT
Sbjct: 178 PISALHGAN-----------IDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPP 226
Query: 869 ------VVTGKIERGIVKNGEEIEIVGYK----------QTIKTTITGIEMFKKTLDEGL 912
V+ G I +G +K G+EIEI + I T I ++ + ++E
Sbjct: 227 EKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAY 286
Query: 913 AGENVGI---LLRSVKREEVERGQVLAKIGSIK-SYNIFECEVYILSKEEGGRH----TP 964
G VG+ L + + ++ G V+ K G + ++ EV++L + G P
Sbjct: 287 PGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEP 346
Query: 965 FFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAI-RE 1021
T G +V ++ V L + E G R AI R+
Sbjct: 347 IKRKEVLLLNVGTARTMG---------LVTGLGKDEIEVKLQIPVCAEPGDRVAISRQ 395
Score = 52.2 bits (126), Expect = 5e-07
Identities = 55/222 (24%), Positives = 79/222 (35%), Gaps = 75/222 (33%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV--S 67
NIG++ HVD GKTT T+ + +G TD +E RGITI
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TG------------VWTDTHSEELRRGITIKIGFADAE 56
Query: 68 IFWEVNKFKYMIN-----------------IIDTPGHVDFTIEVERSLR---VLDGAVII 107
I N +Y + ID PGH + L ++DGA+++
Sbjct: 57 IRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEAL---MTTMLAGASLMDGAILV 113
Query: 108 ICASSGI-QPQTETVWFQSQKYKVPKM-IFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN 165
I A+ +PQT Q + I NK++ ++D +K
Sbjct: 114 IAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIE---------LVDKEK---------- 154
Query: 166 FNIGIEENYEGIVDIINKKSFFWKENSIIIK-------NIDK 200
ENY I + I EN+ II NID
Sbjct: 155 ----ALENYRQIKEFIEG---TVAENAPIIPISALHGANIDV 189
Score = 31.1 bits (71), Expect = 2.3
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 242 IRKLVLKNKI--IPIMCGSSLKNKGIEFLLNSICEYLPSP 279
I++ + PI+ S+L I+ L+ +I +++P+P
Sbjct: 162 IKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 496 bits (1279), Expect = e-167
Identities = 110/415 (26%), Positives = 160/415 (38%), Gaps = 86/415 (20%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESEN- 713
G +GHVDHGKT+LT ALT V + D EE RGI+I + + E
Sbjct: 12 GMVGHVDHGKTSLTKALTGVWT-------------DRHSEELRRGISIRLGYADCEIRKC 58
Query: 714 ----------------------KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG- 750
+ + VD PGH + M++GA+ MDGAILV +A +
Sbjct: 59 PQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPC 118
Query: 751 PMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIV 810
P PQT+EH++ +G+ I++ NK D V +K+ + E + EN I+
Sbjct: 119 PQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVK---GTIAENAPII 175
Query: 811 IGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGT-- 868
SA +I LL + IPTP R D M + F I+ GT
Sbjct: 176 PISAHHEA-----------NIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEI 224
Query: 869 ------VVTGKIERGIVKNGEEIEI-VGYK---------QTIKTTITGIEMFKKTLDEGL 912
V+ G I +G+ K G+EIEI G K + + T I + L +
Sbjct: 225 KDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAH 284
Query: 913 AGENVGI---LLRSVKREEVERGQVLAKIGSIK-SYNIFECEVYILSKEEGGRH----TP 964
G +G+ L + + + G V+ G++ +L + G + P
Sbjct: 285 PGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEP 344
Query: 965 FFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIGLRFAI 1019
G T G V GD + L I EIG R AI
Sbjct: 345 LRTGEVLMLNIGTATTAG-------VITSARGDIAD--IKLKLPICAEIGDRVAI 390
Score = 54.2 bits (131), Expect = 1e-07
Identities = 53/219 (24%), Positives = 84/219 (38%), Gaps = 69/219 (31%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITI-------- 61
NIG++ HVD GKT+ T+ + +G TD +E RGI+I
Sbjct: 10 NIGMVGHVDHGKTSLTKAL---TG------------VWTDRHSEELRRGISIRLGYADCE 54
Query: 62 -----------TSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICA 110
T +F ++ +D+PGH + ++DGA+++I A
Sbjct: 55 IRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAA 114
Query: 111 SSGI-QPQTETVWFQSQKYKVPKM-IFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNI 168
+ QPQT+ + + K+ I NK+D ++D K+
Sbjct: 115 NEPCPQPQTKEHLMALEILGIDKIIIVQNKID---------LVDEKQ------------- 152
Query: 169 GIEENYEGIVDIINKKSFFWKENSIIIK-------NIDK 200
EENYE I + + EN+ II NID
Sbjct: 153 -AEENYEQIKEFVKG---TIAENAPIIPISAHHEANIDV 187
Score = 31.9 bits (73), Expect = 1.3
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 240 NSIRKLVLKNKI--IPIMCGSSLKNKGIEFLLNSICEYLPSP 279
I++ V PI+ S+ I+ LL +I +++P+P
Sbjct: 158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 423 bits (1089), Expect = e-134
Identities = 165/778 (21%), Positives = 304/778 (39%), Gaps = 138/778 (17%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RN+ +IAHVD GK+T T+ ++ +G TD + EQERGITI S ++S+
Sbjct: 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGE--ARFTDTRKDEQERGITIKSTAISL 77
Query: 69 FWEVNK------------FKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQP 116
+ E++ ++IN+ID+PGHVDF+ EV +LRV DGA++++ G+
Sbjct: 78 YSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCV 137
Query: 117 QTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINF---------- 166
QTETV Q+ ++ ++ +NK+DR D+ + F V +N
Sbjct: 138 QTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVL 197
Query: 167 ----------NIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLET 216
+ G I + + + + + K D+L ++N +
Sbjct: 198 GDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKW 257
Query: 217 LSNND------------EFFLEK-YINNNYSINDIKNSIRKLVLKNKII----------- 252
+ + F L+ + +N K+ I L+ K +I+
Sbjct: 258 TNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGK 317
Query: 253 PIMCGSSLKNKGI-EFLLNSICEYLPSPYDVDFK--NNDYNINLNSN------------K 297
++ K + LL I +LPSP Y +
Sbjct: 318 ALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKAD 377
Query: 298 FVSLVFKIFHDPFLGS-LSFIRIYSGFIKVGDLVY---------NSTKKVKEKIFRILRM 347
+ V K+ G +F R+++G +K G V + I R++ M
Sbjct: 378 LMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLM 437
Query: 348 FANSKKDINDAHFGDIVVIVGLKESSTGD-TLCSLSENIQLENIETPI-PVISISIEPIF 405
+ I+D G+I+ +VG+ + TL + ++ ++ + PV+ +++E
Sbjct: 438 MGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKN 497
Query: 406 KNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKE-NNIKTKI 464
ND KL+ L++ K DP +L + + +GE I++G GELHLEI + + + + KI
Sbjct: 498 ANDLPKLVEGLKRLSKSDPCVLTYM-SESGEHIVAGTGELHLEICLQDLEHDHAGVPLKI 556
Query: 465 SKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENF----------- 513
S P V+Y+E++ E S ++ + ++ EPI E
Sbjct: 557 SPPVVAYRETV----ESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDF 612
Query: 514 --------------------------------IFKSEIIGGSIPKEFIPAIEKGIMNQIN 541
+ + E ++
Sbjct: 613 KARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATK 672
Query: 542 YGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAI--ALKDALKKANSYILEPIMKVE 599
G + G + ++V +++ + H+ + + A A+ I EP+ VE
Sbjct: 673 EGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVE 732
Query: 600 VNLPSEFLGIVVGDINKKRGIINTIIDHEN--FKIINSYIPLRELFGYSTDLRSNTKG 655
+ P + +G + +NKKRG + + + +Y+P+ E FG++ +LR T G
Sbjct: 733 IQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGG 790
Score = 88.2 bits (218), Expect = 7e-18
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITI-STS-------- 705
I HVDHGK+TLT +L + + I + D +E+ERGITI ST+
Sbjct: 23 SVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMS 82
Query: 706 -----HVEYESENKHYA--HVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREH 758
++ +++ + +D PGH D+ + DGA++V ++G QT
Sbjct: 83 DEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV 142
Query: 759 ILLARQVGVPNIVVFLNKAD 778
+ A + VV +NK D
Sbjct: 143 LRQALGERIK-PVVVINKVD 161
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 216 bits (553), Expect = 6e-62
Identities = 117/420 (27%), Positives = 196/420 (46%), Gaps = 72/420 (17%)
Query: 657 IGHVDHGKTTLT---------------AALTKVSSEIYGGEVRAFDTIDNAPEEKERGIT 701
IGHVDHGK+TL + + ++ + +D EE+ERG+T
Sbjct: 12 IGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVT 71
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-------PMPQ 754
I+ + + +E++ + +D PGH D++KNMITGA+Q D AILV SA G Q
Sbjct: 72 INLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQ 131
Query: 755 TREHILLARQVGVPNIVVFLNKADCVQ---DKELLDLVEMEIRELLTEYDFDGENTKIVI 811
TREHI+LA+ +G+ ++V +NK D + D++ + ++ + + Y F+ + V
Sbjct: 132 TREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVP 191
Query: 812 GSALLALEGKDDNQL----------GTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVF 861
A G DN G T L + LD + P + DKP +PI+DV+
Sbjct: 192 VV---APSG--DNITHKSENMKWYNGPT----LEEYLD-QLELPPKPVDKPLRIPIQDVY 241
Query: 862 SISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILL 921
SISG GTV G++E G++K G++I + + + IE +D+ G+N+G +
Sbjct: 242 SISGVGTVPVGRVESGVLKVGDKIVFMPAGKV--GEVRSIETHHTKMDKAEPGDNIGFNV 299
Query: 922 RSVKREEVERGQVL-AKIGSIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDV 980
R V++++++RG V+ + F + ++ T NGY P + T V
Sbjct: 300 RGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVVWHP-----TALANGYTPVLHVHTASV 354
Query: 981 TG-----ICKL--------PENVEMVLPGDNIKLNVTLLSSIAIEI-----GL-RFAIRE 1021
+ KL +N + + GD + + + +E L RFA+R+
Sbjct: 355 ACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRD 414
Score = 73.5 bits (181), Expect = 1e-13
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 31/173 (17%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGS------------SHKIG-EVHHGTTITDWMQQEQE 56
N+ +I HVD GK+T R+L G + K+G E + D +++E+E
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG--- 113
RG+TI F KY IID PGH DF + D A++++ A G
Sbjct: 68 RGVTINLT----FMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYE 123
Query: 114 ----IQPQTETVWFQSQKYKVPKMI-FVNKMDRIGANYNNCIIDIKKKFNCIV 161
++ QT ++ + ++I VNKMD Y+ +K++ IV
Sbjct: 124 AGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD------EKRYKEIV 170
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 213 bits (544), Expect = 3e-59
Identities = 93/420 (22%), Positives = 162/420 (38%), Gaps = 81/420 (19%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIY--GG----EVRAFD---------------TIDNAPEE 695
GHVD GK+T+ + ++ G ++ +D EE
Sbjct: 183 TGHVDSGKSTMLGRI------MFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEE 236
Query: 696 KERGITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM--- 752
+ RG+T+ + +ES+ K Y D PGH D+I MI GA+ D A+LV +
Sbjct: 237 RARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERG 296
Query: 753 ----PQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEY-----DF 802
QTREH L R +G+ IVV +NK D + ++ EI+ +++++ F
Sbjct: 297 FLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQ----EIKNIVSDFLIKMVGF 352
Query: 803 DGENTKIVIGSALLA--LEGKDDNQL-----GTTSIKKLLDVLDSSIPTPNRITDKPFLM 855
N V SA+ L KD + L G T LL LD + P + KP +
Sbjct: 353 KTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPT----LLSALD-QLVPPEKPYRKPLRL 407
Query: 856 PIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTL-DEGLAG 914
I+DV+ TV G++E G V+ + + V ++ + + +AG
Sbjct: 408 SIDDVYRSPRSVTVT-GRVEAGNVQVNQVLYDVSSQED--AYVKNVIRNSDPSSTWAVAG 464
Query: 915 ENVGILLRSVKREEVERGQVLAKIG-SIKSYNIFECEVYILSKEEGGRH-TPFFNGYKPQ 972
+ V + L ++ ++ G +L+ ++ F E+ P +G
Sbjct: 465 DTVTLQLADIEVNQLRPGDILSNYENPVRRVRSFVAEIQTFD------IHGPILSGSTLV 518
Query: 973 FYFRTTDVTGICKLPE----NVEMVLPGDNIKLNVTLLS-SIAIEI-------GLRFAIR 1020
+ T + K+ + + ++ L + + G RF +R
Sbjct: 519 LHLGRTVTSVSLKIVTVNNKRSRHIASRKRALVRISFLDGLFPLCLAEECPALG-RFILR 577
Score = 57.8 bits (140), Expect = 1e-08
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 23/97 (23%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSG--SSHKI-------GEVHHGTT----ITDWMQQEQE 56
++ + HVD+GK+T RI+F G +S + G+ + D ++E+
Sbjct: 179 HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERA 238
Query: 57 RGITITSASVSIFWEVNKF---KYMINIIDTPGHVDF 90
RG+T+ A F K + I D PGH DF
Sbjct: 239 RGVTMDVA-------STTFESDKKIYEIGDAPGHRDF 268
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 208 bits (532), Expect = 1e-58
Identities = 86/393 (21%), Positives = 155/393 (39%), Gaps = 76/393 (19%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIY--GG----EVRAFDT---------------IDNAPEE 695
+GHVD GK+TL L +Y ++R +D EE
Sbjct: 39 LGHVDAGKSTLMGRL------LYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEE 92
Query: 696 KERGITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM--- 752
+ERG+T+S + + ++ VD PGH D++ N I G +Q D AIL
Sbjct: 93 RERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG 152
Query: 753 ----PQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENT 807
QT+EH+LLA +G+ N+++ +NK D V ++ + ++ ++ L + F +N
Sbjct: 153 FDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNI 212
Query: 808 KIV-----IGSALLALEGKDDNQL---GTTSIKKLLDVLDS-----SIPTPNRITDKPFL 854
V G + +E D+ + G L+ L++ S D PFL
Sbjct: 213 NWVPISGFSGEGVYKIEYTDEVRQWYNGPN----LMSTLENAAFKISKENEGINKDDPFL 268
Query: 855 MPIEDVFS---ISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK------ 905
+ ++ S +V+GK+E G ++ GE + I +Q+ + I++
Sbjct: 269 FSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQS--CIVDKIQVGSQQGQST 326
Query: 906 --KTLDEGLAGENVGILLRSVKREEVERGQVL--AKIGSIKSYNIFECEVYILSKEEGGR 961
+ D + G+ V + LR E+++ G + SI S F E+
Sbjct: 327 NHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFD------ 380
Query: 962 H-TPFFNGYKPQFYFRTTDVTGICKLPENVEMV 993
P G + + ++ + +
Sbjct: 381 MNRPLLPGTPFILFIGVKEQP--ARIKRLISFI 411
Score = 57.3 bits (139), Expect = 2e-08
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 35/103 (33%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTT-------------------ITDW 50
+ ++ HVDAGK+T R+L+ + V+ I D
Sbjct: 35 SFVVLGHVDAGKSTLMGRLLY------DLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQ 88
Query: 51 MQQEQERGITITSASVSIFWEVNKF---KYMINIIDTPGHVDF 90
+E+ERG+T++ + F + I+D PGH DF
Sbjct: 89 TNEERERGVTVSIC-------TSHFSTHRANFTIVDAPGHRDF 124
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 207 bits (530), Expect = 1e-58
Identities = 99/422 (23%), Positives = 168/422 (39%), Gaps = 75/422 (17%)
Query: 657 IGHVDHGKTTLT---------------AALTKVSSEIYGGEVRAFDTIDNAPEEKERGIT 701
IGHVD GK+TL + + + E +D+ EE+E+G T
Sbjct: 49 IGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKT 108
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-------PMPQ 754
+ +E+E++ ++ +D PGH Y+ NMI GA+Q D +LV SA G Q
Sbjct: 109 VEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ 168
Query: 755 TREHILLARQVGVPNIVVFLNKADCVQ---DKELLDLVEMEIRELLTE---YDFDGENTK 808
TREH +LAR G+ ++VV +NK D +E ++ L Y+ +
Sbjct: 169 TREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKY 228
Query: 809 IVIGSALLA---LEGKDDNQL----GTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVF 861
+ + SA + D + G + LL+ LD S+ R + PF+MPI +
Sbjct: 229 MPV-SAYTGQNVKDRVDSSVCPWYQGPS----LLEYLD-SMTHLERKVNAPFIMPIASKY 282
Query: 862 SISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGI-EMFKKTLDEGLAGENVGIL 920
GT++ GKIE G +K + ++ QT +T I + + + + G+ V +
Sbjct: 283 --KDLGTILEGKIEAGSIKKNSNVLVMPINQT--LEVTAIYDEADEEISSSICGDQVRLR 338
Query: 921 LR-SVKREEVERGQVLAKIG-SIKSYNIFECEVYILSKEEGGRH-TPFFNGYKPQFYFRT 977
+R +V+ G VL + + F ++ IL + GY + T
Sbjct: 339 VRGDDS--DVQTGYVLTSTKNPVHATTRFIAQIAILE------LPSILTTGYSCVMHIHT 390
Query: 978 TDVTGIC------------KLPENVEMVLPGDNIKLNVTLLSSIAIEI-----GL-RFAI 1019
K + G I + + + +E + RF +
Sbjct: 391 AVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTL 450
Query: 1020 RE 1021
R+
Sbjct: 451 RD 452
Score = 71.2 bits (175), Expect = 7e-13
Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 31/173 (17%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGS------------SHKIG-EVHHGTTITDWMQQEQE 56
NI I HVDAGK+T ILF +G + + G E + + D +E+E
Sbjct: 45 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 104
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG--- 113
+G T+ +++D PGH + + D V++I A G
Sbjct: 105 KGKTVEVG----RAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 160
Query: 114 ----IQPQTETVWFQSQKYKVPKMI-FVNKMDRIGANYNNCIIDIKKKFNCIV 161
QT ++ + ++ +NKMD ++ ++++ V
Sbjct: 161 AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS------EERYKECV 207
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A
{Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 206 bits (526), Expect = 4e-58
Identities = 121/426 (28%), Positives = 186/426 (43%), Gaps = 73/426 (17%)
Query: 657 IGHVDHGKTTLTAAL---------------TKVSSEIYGGEVRAFDTIDNAPEEKERGIT 701
IGHVD GK+T T L K ++E+ G + +D E+ERGIT
Sbjct: 13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGIT 72
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDG-------PMPQ 754
I + ++E+ +D PGH D+IKNMITG +Q D AIL+ + G Q
Sbjct: 73 IDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQ 132
Query: 755 TREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENTKIVIGS 813
TREH LLA +GV ++V +NK D V+ D+ + E + + ++ + V S
Sbjct: 133 TREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPIS 192
Query: 814 AL-----------------LALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMP 856
E K G T LL+ +D +I P+R TDKP +P
Sbjct: 193 GWNGDNMIEATTNAPWYKGWEKETKAGVVKGKT----LLEAID-AIEQPSRPTDKPLRLP 247
Query: 857 IEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGEN 916
++DV+ I G GTV G++E G++K G + T T + +EM + L++G+ G+N
Sbjct: 248 LQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVT--TEVKSVEMHHEQLEQGVPGDN 305
Query: 917 VGILLRSVKREEVERGQVL--AKIGSIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFY 974
VG +++V +E+ RG V AK K F V +L+ GY P
Sbjct: 306 VGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHP-----GQISAGYSPVLD 360
Query: 975 FRTTDVTGIC-------------KLPENVEMVLPGDNIKLNVTLLSSIAIEI-----GL- 1015
T + KL ++ + + GD + + +E L
Sbjct: 361 CHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLG 420
Query: 1016 RFAIRE 1021
RFA+R+
Sbjct: 421 RFAVRD 426
Score = 75.1 bits (185), Expect = 3e-14
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 25/152 (16%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGS------------SHKIG-EVHHGTTITDWMQQEQE 56
N+ +I HVD+GK+TTT +++ G + ++G + D ++ E+E
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQP 116
RGITI A W+ KY + +ID PGH DF + D A++II G
Sbjct: 69 RGITIDIA----LWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFE 124
Query: 117 QTETVWFQSQKYK-------VPKMIF-VNKMD 140
+ Q++++ V ++I VNKMD
Sbjct: 125 AGISKDGQTREHALLAFTLGVRQLIVAVNKMD 156
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 208 bits (532), Expect = 1e-57
Identities = 86/393 (21%), Positives = 155/393 (39%), Gaps = 76/393 (19%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIY--GG----EVRAFDT---------------IDNAPEE 695
+GHVD GK+TL L +Y ++R +D EE
Sbjct: 173 LGHVDAGKSTLMGRL------LYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEE 226
Query: 696 KERGITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM--- 752
+ERG+T+S + + ++ VD PGH D++ N I G +Q D AIL
Sbjct: 227 RERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG 286
Query: 753 ----PQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENT 807
QT+EH+LLA +G+ N+++ +NK D V ++ + ++ ++ L + F +N
Sbjct: 287 FDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNI 346
Query: 808 KIVIGSA-----LLALEGKDDNQL---GTTSIKKLLDVLDS-----SIPTPNRITDKPFL 854
V S + +E D+ + G L+ L++ S D PFL
Sbjct: 347 NWVPISGFSGEGVYKIEYTDEVRQWYNGPN----LMSTLENAAFKISKENEGINKDDPFL 402
Query: 855 MPIEDVFS---ISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK------ 905
+ ++ S +V+GK+E G ++ GE + I +Q+ + I++
Sbjct: 403 FSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQS--CIVDKIQVGSQQGQST 460
Query: 906 --KTLDEGLAGENVGILLRSVKREEVERGQVL--AKIGSIKSYNIFECEVYILSKEEGGR 961
+ D + G+ V + LR E+++ G + SI S F E+
Sbjct: 461 NHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFD------ 514
Query: 962 H-TPFFNGYKPQFYFRTTDVTGICKLPENVEMV 993
P G + + ++ + +
Sbjct: 515 MNRPLLPGTPFILFIGVKEQP--ARIKRLISFI 545
Score = 57.4 bits (139), Expect = 1e-08
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 23/97 (23%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSG--SSHKI-------GEVHHGTT----ITDWMQQEQE 56
+ ++ HVDAGK+T R+L+ + ++ + + I D +E+E
Sbjct: 169 SFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERE 228
Query: 57 RGITITSASVSIFWEVNKF---KYMINIIDTPGHVDF 90
RG+T++ + F + I+D PGH DF
Sbjct: 229 RGVTVSIC-------TSHFSTHRANFTIVDAPGHRDF 258
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis,
translation; HET: GDP; 2.11A {Coxiella burnetii}
Length = 528
Score = 189 bits (482), Expect = 1e-51
Identities = 128/488 (26%), Positives = 214/488 (43%), Gaps = 71/488 (14%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH----HGTTITDWMQQEQERGITITSA 64
R II+H DAGKTT TE++L + G+ G + +DWM+ E++RGI++T++
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTS 73
Query: 65 SVSIFWEVNKFKY---MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETV 121
V +F Y +IN++DTPGH DFT + R+L +D A+++I A+ G++P+T +
Sbjct: 74 -------VMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKL 126
Query: 122 WFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDII 181
+ P M F+NKMDR + +I+ P+ + IG+ + ++GI +I
Sbjct: 127 MEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPVTWPIGMGKYFKGIYHLI 186
Query: 182 NKKSFF-------WKENSIIIKNIDKDQLSAF--DYYNELMLETL---SNNDEFFLEKYI 229
+ S I+ I+ +L D +EL E + F E Y
Sbjct: 187 EDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGY- 245
Query: 230 NNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDY 289
LK ++ PI GS++ N G+ LL++ + P P + N
Sbjct: 246 -----------------LKGELTPIFFGSAINNFGVGELLDAFVKEAPPP--QGRETNSR 286
Query: 290 NINLNSNKFVSLVFKIF-------HDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIF 342
+ KF VFKI D ++F+RI SG + G Y+ K + +I
Sbjct: 287 LVKPEEEKFSGFVFKIQANMDPGHRD----RIAFLRIASGQYQKGMKAYHVRLKKEIQIN 342
Query: 343 RILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVIS---- 398
L A +++ +A GDI+ + GDT E + T IP +
Sbjct: 343 NALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQ-GERFKF----TGIPNFASELF 397
Query: 399 --ISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILK 456
+ ++ K LL L + +E + L ++ E IL +G L +++ R+
Sbjct: 398 RLVRLKDPLKQKA--LLKGLTQLSEEGATQLF-RPLDSNELILGAVGLLQFDVVAYRLEN 454
Query: 457 ENNIKTKI 464
E N+K
Sbjct: 455 EYNVKCVY 462
Score = 70.1 bits (172), Expect = 2e-12
Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 9/154 (5%)
Query: 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEI-YGGEVRA-----FDTIDNAPEEKERGITIS 703
T I H D GKTTLT L I G +++ T D EK+RGI+++
Sbjct: 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVT 71
Query: 704 TSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLAR 763
TS +++ ++ +D PGHAD+ ++ +D A++V A G P+T + + + R
Sbjct: 72 TSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCR 131
Query: 764 QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797
P I+ F+NK D + ++L++ EI +L
Sbjct: 132 LRHTP-IMTFINKMD-RDTRPSIELLD-EIESIL 162
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W*
3zvo_Y* 3uoq_W*
Length = 529
Score = 186 bits (473), Expect = 2e-50
Identities = 111/489 (22%), Positives = 218/489 (44%), Gaps = 72/489 (14%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVH----HGTTITDWMQQEQERGITITSA 64
R II+H DAGKTT TE++L + + G V + +DWM+ E++RGI+IT++
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 65 SVSIFWEVNKFKY---MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETV 121
V +F Y ++N++DTPGH DF+ + R+L +D +++I A+ G++ +T +
Sbjct: 74 -------VMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKL 126
Query: 122 WFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDII 181
++ P + F+NK+DR + + +++ + PI + IG + ++G+ +
Sbjct: 127 MEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLY 186
Query: 182 NKKSFFWKENS-------IIIKNIDKDQLSAF------DYYNELMLETLSNNDEFFLEKY 228
+++ ++ I+K ++ L A + + ++EF E +
Sbjct: 187 KDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELF 246
Query: 229 INNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNND 288
L +I P+ G++L N G++ +L+ + E+ P+P + + +
Sbjct: 247 ------------------LAGEITPVFFGTALGNFGVDHMLDGLVEWAPAP--MPRQTDT 286
Query: 289 YNINLNSNKFVSLVFKIF-------HDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKI 341
+ + +KF VFKI D ++F+R+ SG + G + I
Sbjct: 287 RTVEASEDKFTGFVFKIQANMDPKHRD----RVAFMRVVSGKYEKGMKLRQVRTAKDVVI 342
Query: 342 FRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVIS--- 398
L A + + +A+ GDI+ + GDT E ++ T IP +
Sbjct: 343 SDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQ-GEMMKF----TGIPNFAPEL 397
Query: 399 ---ISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRIL 455
I ++ K Q LL L + +E + + + I+ +G L +++V R+
Sbjct: 398 FRRIRLKDPLKQKQ--LLKGLVQLSEEGAVQVF-RPISNNDLIVGAVGVLQFDVVVARLK 454
Query: 456 KENNIKTKI 464
E N++
Sbjct: 455 SEYNVEAVY 463
Score = 69.0 bits (169), Expect = 4e-12
Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 9/154 (5%)
Query: 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEI-YGGEVRA-----FDTIDNAPEEKERGITIS 703
+ T I H D GKTT+T + I G V+ D EK+RGI+I+
Sbjct: 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISIT 71
Query: 704 TSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLAR 763
TS +++ + +D PGH D+ ++ +D ++V A G +TR+ + + R
Sbjct: 72 TSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR 131
Query: 764 QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797
P I+ F+NK D ++ ++L++ E+ L
Sbjct: 132 LRDTP-ILTFMNKLD-RDIRDPMELLD-EVENEL 162
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 160 bits (406), Expect = 2e-42
Identities = 79/313 (25%), Positives = 144/313 (46%), Gaps = 42/313 (13%)
Query: 656 TIGHVDHGKTTL---------------TAALTKVSSE--IYGGEVRAFDTIDNAPEEKER 698
T G+VD GK+TL A+T+ S + G +V +D E+E+
Sbjct: 29 TCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQ 88
Query: 699 GITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREH 758
GITI ++ + + + + D PGH Y +NM TGA+ D AI++ A G QTR H
Sbjct: 89 GITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH 148
Query: 759 ILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLA 817
+A +G+ +IVV +NK D D+ + + ++ + + F V S A
Sbjct: 149 SYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMS---A 205
Query: 818 LEGKDDNQLGTTSIKK-------LLDVLDSSIPTPNRITDKPFLMPIEDV--FSISGRGT 868
L+G DN + S + L+++L+ ++ + P++ V +++ RG
Sbjct: 206 LKG--DN-VVNKSERSPWYAGQSLMEILE-TVEIASDRNYTDLRFPVQYVNRPNLNFRG- 260
Query: 869 VVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSVKRE- 927
G + GIV G+EI ++ ++ + + I F+ L++ G+ V + + + E
Sbjct: 261 -FAGTLASGIVHKGDEIVVLPSGKS--SRVKSIVTFEGELEQAGPGQAVTLTM---EDEI 314
Query: 928 EVERGQVLAKIGS 940
++ RG +L +
Sbjct: 315 DISRGDLLVHADN 327
Score = 72.3 bits (178), Expect = 3e-13
Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 24/152 (15%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGS------------SHKIGEVHHGTTI-----TDWMQ 52
+VD GK+T R+L S S K G G + D +Q
Sbjct: 26 RFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSG--TTGDDVDLALLVDGLQ 83
Query: 53 QEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASS 112
E+E+GITI A ++ K K++ I DTPGH +T + D A+I++ A
Sbjct: 84 AEREQGITIDVA--YRYFSTAKRKFI--IADTPGHEQYTRNMATGASTCDLAIILVDARY 139
Query: 113 GIQPQTETVWFQSQKYKVPKMIF-VNKMDRIG 143
G+Q QT + + + ++ +NKMD G
Sbjct: 140 GVQTQTRRHSYIASLLGIKHIVVAINKMDLNG 171
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function,
protein structure INI secsg, conserved hypothetical
protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP:
b.43.3.1
Length = 116
Score = 108 bits (272), Expect = 4e-28
Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 845 PNRITDKPFL-MPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEM 903
++ KP + +E+V +I G+ ++ G +E G++ G +++ + I IE
Sbjct: 26 IEILSKKPAGKVVVEEVVNIMGKDVII-GTVESGMIGVGFKVK----GPSGIGGIVRIER 80
Query: 904 FKKTLDEGLAGENVGILLRSVKREEVERGQVLA 936
++ ++ +AG+ +GI + K +V++G VL
Sbjct: 81 NREKVEFAIAGDRIGISIEG-KIGKVKKGDVLE 112
Score = 28.9 bits (65), Expect = 2.8
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 968 GYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNV 1003
G+K + + I + E VE + GD I +++
Sbjct: 63 GFKVKGPSGIGGIVRIERNREKVEFAIAGDRIGISI 98
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 106 bits (267), Expect = 7e-24
Identities = 49/111 (44%), Positives = 73/111 (65%), Gaps = 4/111 (3%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RN IIAHVD GK+T +R+L Y+G+ I E + D + E+ERGIT+ +V +
Sbjct: 7 RNFCIIAHVDHGKSTLADRLLEYTGA---ISEREKREQLLDTLDVERERGITVKMQAVRM 63
Query: 69 FWEV-NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
F++ + Y +++IDTPGHVDF+ EV R+L +GA+++I AS GI+ QT
Sbjct: 64 FYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQT 114
Score = 53.2 bits (129), Expect = 3e-07
Identities = 82/280 (29%), Positives = 128/280 (45%), Gaps = 37/280 (13%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHV--EYESEN- 713
I HVDHGK+TL L + + I E R +D E+ERGIT+ V Y++++
Sbjct: 12 IAHVDHGKSTLADRLLEYTGAISEREKRE-QLLDTLDVERERGITVKMQAVRMFYKAKDG 70
Query: 714 KHYA--HVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIV 771
Y +D PGH D+ + A +GA+L+ A G QT + A + + I+
Sbjct: 71 NTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDL-VII 129
Query: 772 VFLNKADCVQDKELL-----DLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQL 826
+NK D L D V+ +I E+L D E ++ SA K +
Sbjct: 130 PVINKID-------LPSADVDRVKKQIEEVL---GLDPEE--AILASA------K--EGI 169
Query: 827 GTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIE 886
G I+++L+ + + IP P KP I D + RG V +I G VK G++I
Sbjct: 170 G---IEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIM 226
Query: 887 IVGYKQTIKTTITGIEMFKKTLDEGL-AGENVGILLRSVK 925
++ + + T G + K T + L AG+ VG + S+K
Sbjct: 227 LMSTGKEYEVTEVGAQTPKMTKFDKLSAGD-VGYIAASIK 265
Score = 50.5 bits (122), Expect = 2e-06
Identities = 51/228 (22%), Positives = 97/228 (42%), Gaps = 41/228 (17%)
Query: 264 GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGF 323
GIE +L +I +P P D L + L+F ++DP+ G+++F+RI+ G
Sbjct: 170 GIEEILEAIVNRIPPPKG------DPQKPLKA-----LIFDSYYDPYRGAVAFVRIFDGE 218
Query: 324 IKVGDLVYN-STKKVKEKIFRILRM--FANSKKDINDAHFGDI-VVIVGLK---ESSTGD 376
+K GD + ST K + + + + GD+ + +K + GD
Sbjct: 219 VKPGDKIMLMSTGKE----YEVTEVGAQTPKMTKFDKLSAGDVGYIAASIKDVRDIRIGD 274
Query: 377 TLCSLSENIQ--LENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNT 434
T+ + + + P++ I P E+L + L+K+ D +++
Sbjct: 275 TITHAKNPTKEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYEP---- 330
Query: 435 GETILSG----------MGELHLEIIVDRILKENNIKTKISKPQVSYK 472
E+ S +G LH+EI+ +R+ +E +K + P V Y+
Sbjct: 331 -ES--SPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIYR 375
Score = 37.1 bits (87), Expect = 0.033
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 590 YILEPIMKVEVNLPSEFLGIVVGDINKKRGI-INTIIDHENFKIINSYIPLRE-LFGYST 647
Y+ EP + V + P E++G ++ +KRGI N N + +PL E + +
Sbjct: 402 YVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEYEMPLSEIIVDFHD 461
Query: 648 DLRSNTKG 655
++S ++G
Sbjct: 462 KIKSISRG 469
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 106 bits (266), Expect = 1e-23
Identities = 46/111 (41%), Positives = 70/111 (63%), Gaps = 4/111 (3%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RN IIAH+D GK+T ++RI+ G + + + D M E+ERGITI + SV++
Sbjct: 5 RNFSIIAHIDHGKSTLSDRIIQICGG---LSDREMEAQVLDSMDLERERGITIKAQSVTL 61
Query: 69 FWEV-NKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
++ + Y +N IDTPGHVDF+ EV RSL +GA++++ A G++ QT
Sbjct: 62 DYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQT 112
Score = 53.2 bits (129), Expect = 4e-07
Identities = 77/281 (27%), Positives = 130/281 (46%), Gaps = 39/281 (13%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHV--EYESEN- 713
I H+DHGK+TL+ + ++ + E+ A +D+ E+ERGITI V +Y++ +
Sbjct: 10 IAHIDHGKSTLSDRIIQICGGLSDREMEA-QVLDSMDLERERGITIKAQSVTLDYKASDG 68
Query: 714 KHYA--HVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIV 771
+ Y +D PGH D+ + A +GA+LV A G QT + A ++ + +V
Sbjct: 69 ETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDL-EVV 127
Query: 772 VFLNKADCVQDKELL-----DLVEMEIRELLTEYDFDG-ENTKIVIGSALLALEGKDDNQ 825
LNK D L + V EI +++ G + T V SA K
Sbjct: 128 PVLNKID-------LPAADPERVAEEIEDIV------GIDATDAVRCSA------K--TG 166
Query: 826 LGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEI 885
+G ++ +L+ L IP P + P I D + + G V +I+ G ++ G+++
Sbjct: 167 VG---VQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKV 223
Query: 886 EIVGYKQTIKTTITGIEMFKKTLDEGL-AGENVGILLRSVK 925
+++ QT GI K+ L GE VG L+ ++K
Sbjct: 224 KVMSTGQTYNADRLGIFTPKQVDRTELKCGE-VGWLVCAIK 263
Score = 50.9 bits (123), Expect = 2e-06
Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 41/228 (17%)
Query: 264 GIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGF 323
G++ +L + +P P D L + L+ + D +LG +S IRI +G
Sbjct: 168 GVQDVLERLVRDIPPPEG------DPEGPLQA-----LIIDSWFDNYLGVVSLIRIKNGT 216
Query: 324 IKVGDLVYN-STKKVKEKIFRILRM--FANSKKDINDAHFGDI-VVIVGLK---ESSTGD 376
++ GD V ST + + R+ F + D + G++ ++ +K + GD
Sbjct: 217 LRKGDKVKVMSTGQT----YNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGD 272
Query: 377 TLCSLSENIQ--LENIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNT 434
TL + L + P + + P+ +D E + L K D SL
Sbjct: 273 TLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYEP---- 328
Query: 435 GETILSG----------MGELHLEIIVDRILKENNIKTKISKPQVSYK 472
E+ S +G LH+EII +R+ +E ++ + P V Y+
Sbjct: 329 -ES--SSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYE 373
Score = 39.4 bits (93), Expect = 0.006
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 590 YILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRE-LFGYSTD 648
+ EPI + + LP +LG V+ +KRG+ ++ H N + IP+ E + +
Sbjct: 398 ELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEVVLDFFDR 457
Query: 649 LRSNTKG 655
L+S ++G
Sbjct: 458 LKSTSRG 464
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation
termination, peptide release, PTC, P biosynthesis,
GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Length = 204
Score = 85.3 bits (212), Expect = 6e-19
Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 35/195 (17%)
Query: 849 TDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTL 908
P +PI D + GTVV GK+E G + G+++ ++ K + GI
Sbjct: 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHN--VEVLGILSDDVET 58
Query: 909 DEGLAGENVGILLRSVKREEVERGQVLAKIGS-IKSYNIFECEVYILSKEEGGRH-TPFF 966
D GEN+ I L+ ++ EE+ G +L + S F+ ++ I+ H +
Sbjct: 59 DTVAPGENLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDAQIVIIE------HKSIIC 112
Query: 967 NGYKPQFYFRTTDV--------------TGICKLPENVEMVLPGDNIKLNVTLLSSIAIE 1012
GY + T +G K V + +I +E
Sbjct: 113 PGYNAVLHIHTCIEEVEITALICLVDKKSGE-KSKTRPRFVKQDQVCIARLRTAGTICLE 171
Query: 1013 -------IGLRFAIR 1020
+G RF +R
Sbjct: 172 TFKDFPQMG-RFTLR 185
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 78.5 bits (194), Expect = 7e-17
Identities = 49/128 (38%), Positives = 60/128 (46%), Gaps = 26/128 (20%)
Query: 656 TI-GHVDHGKTTLTAAL--TKVSSEIYGGEVRAFDTIDNAPEEKERGIT--ISTSHVEYE 710
TI GHVDHGKTTL A+ +KV+ + GG IT I V
Sbjct: 12 TIMGHVDHGKTTLLDAIRHSKVTEQEAGG------------------ITQHIGAYQVTVN 53
Query: 711 SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNI 770
+K +D PGH + GA D ILV +A DG MPQT E I A+ VP I
Sbjct: 54 --DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-I 110
Query: 771 VVFLNKAD 778
+V +NK D
Sbjct: 111 IVAINKMD 118
Score = 59.2 bits (144), Expect = 4e-10
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 26/135 (19%)
Query: 13 IIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGIT--ITSASVSIFW 70
I+ HVD GKTT + I K+ E G GIT I + +
Sbjct: 13 IMGHVDHGKTTLLDAI-----RHSKVTEQEAG-------------GITQHIGA------Y 48
Query: 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV 130
+V I +DTPGH FT R +V D ++++ A G+ PQT ++ V
Sbjct: 49 QVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANV 108
Query: 131 PKMIFVNKMDRIGAN 145
P ++ +NKMD+ AN
Sbjct: 109 PIIVAINKMDKPEAN 123
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 72.9 bits (180), Expect = 2e-13
Identities = 53/128 (41%), Positives = 63/128 (49%), Gaps = 26/128 (20%)
Query: 656 TI-GHVDHGKTTLTAAL--TKVSSEIYGGEVRAFDTIDNAPEEKERGIT--ISTSHVEYE 710
TI GHVDHGKT+L + TKV+S GE GIT I HVE E
Sbjct: 8 TIMGHVDHGKTSLLEYIRSTKVAS----GEAG--------------GITQHIGAYHVETE 49
Query: 711 SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNI 770
N +D PGHA + GA D +LV +A DG MPQT E I A+ VP +
Sbjct: 50 --NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-V 106
Query: 771 VVFLNKAD 778
VV +NK D
Sbjct: 107 VVAVNKID 114
Score = 49.0 bits (118), Expect = 6e-06
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 78 MINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVN 137
MI +DTPGH FT R + D V+++ A G+ PQT ++ +VP ++ VN
Sbjct: 52 MITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVN 111
Query: 138 KMDRIGAN 145
K+D+ A+
Sbjct: 112 KIDKPEAD 119
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 71.8 bits (177), Expect = 4e-13
Identities = 48/128 (37%), Positives = 58/128 (45%), Gaps = 25/128 (19%)
Query: 656 TI-GHVDHGKTTLTAAL--TKVSSEIYGGEVRAFDTIDNAPEEKERGIT--ISTSHVEYE 710
TI GHVDHGKTTL L T+V++ GG IT I V
Sbjct: 8 TIMGHVDHGKTTLLDKLRKTQVAAMEAGG------------------ITQHIGAFLVSLP 49
Query: 711 SENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNI 770
S + +D PGHA + G D ILV +A DG M QT E I A+ VP I
Sbjct: 50 S-GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-I 107
Query: 771 VVFLNKAD 778
V+ +NK D
Sbjct: 108 VLAINKCD 115
Score = 50.3 bits (121), Expect = 3e-06
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 39 GEVHHG-TTITDWMQQ----EQERG-IT--ITSASVSIFWEVNKFKYMINIIDTPGHVDF 90
G V HG TT+ D +++ E G IT I + VS+ I +DTPGH F
Sbjct: 11 GHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSL-----PSGEKITFLDTPGHAAF 65
Query: 91 TIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGAN 145
+ R +V D ++++ A G+ QT ++ VP ++ +NK D+ A+
Sbjct: 66 SAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEAD 120
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 70.8 bits (174), Expect = 1e-12
Identities = 63/324 (19%), Positives = 101/324 (31%), Gaps = 88/324 (27%)
Query: 658 GHVDHGKTTLTAAL--TKVSSEIYGGEVRAFDTIDNAPEEKERGIT--ISTSHVEYESEN 713
GHVDHGKTTL + + V+S E GIT I + + +
Sbjct: 12 GHVDHGKTTLLDHIRGSAVAS----REAG--------------GITQHIGATEIPMDVIE 53
Query: 714 KHYAHVDCPGHADYIKNMIT----------------GAAQMDGAILVCSAVDGPMPQTRE 757
+ G A D AIL+ +G PQT+E
Sbjct: 54 GICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQE 113
Query: 758 HILLARQVGVPNIVVFLNKAD-----------------CVQDKELLDLVEM---EIRELL 797
+ + R P VV NK D QD ++ ++ E+ L
Sbjct: 114 ALNILRMYRTP-FVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKL 172
Query: 798 TEYDFD----------GENTKIVIGSALLALEGKDDNQLGTTSIKKLLD--VLDSSIPTP 845
E F+ I+ SA+ EG + LL + +
Sbjct: 173 HEEGFESERFDRVTDFASQVSIIPISAITG-EGIPE----------LLTMLMGLAQQYLR 221
Query: 846 NRITDKPFLMP----IEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGI 901
++ + +E V +G G + I GI++ + I ++ K I T I +
Sbjct: 222 EQLKIEEDSPARGTILE-VKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSL 280
Query: 902 EMFKKTLDEGLAGENVGILLRSVK 925
+ L+E + V
Sbjct: 281 LK-PRPLEEMRESRKKFQKVDEVV 303
Score = 49.2 bits (118), Expect = 7e-06
Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 44/163 (26%)
Query: 16 HVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQE-RGIT-------------- 60
HVD GKTT + I G+ + +E GIT
Sbjct: 13 HVDHGKTTLLDHI--------------RGSAV-----ASREAGGITQHIGATEIPMDVIE 53
Query: 61 ITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLR-----VLDGAVIIICASSGIQ 115
+ + + + IDTPGH FT +LR + D A++I+ + G +
Sbjct: 54 GICGDFLKKFSIRETLPGLFFIDTPGHEAFT-----TLRKRGGALADLAILIVDINEGFK 108
Query: 116 PQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFN 158
PQT+ + Y+ P ++ NK+DRI + + F+
Sbjct: 109 PQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFS 151
Score = 31.1 bits (71), Expect = 2.2
Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 13/67 (19%)
Query: 858 EDVFSISGRGTVVTGKIERGIVKNG-----EEIEIVGYKQTIKTTITGIEMFKKTLDEGL 912
+ VF + + ++ G+++ G ++ E VG T+ ++ + L
Sbjct: 471 KLVFR-QSKPAIGGVEVLTGVIRQGYPLMNDDGETVG-------TVESMQDKGENLKSAS 522
Query: 913 AGENVGI 919
G+ V +
Sbjct: 523 RGQKVAM 529
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.4 bits (161), Expect = 4e-11
Identities = 105/749 (14%), Positives = 225/749 (30%), Gaps = 256/749 (34%)
Query: 126 QKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKS 185
+Y+ ++ V + F+C + + D+ KS
Sbjct: 14 HQYQYKDILSVFEDA------------FVDNFDC---------------KDVQDMP--KS 44
Query: 186 FFWKENSIIIKNI--DKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIR 243
KE I +I KD +S +L + F+E+ + NY
Sbjct: 45 ILSKEE---IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY---------- 91
Query: 244 KLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVF 303
+FL++ I P ++ + ++
Sbjct: 92 ----------------------KFLMSPIKTEQRQP------------SMMTRMYIEQRD 117
Query: 304 KIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDI 363
++++D F K YN ++ + ++ + + N
Sbjct: 118 RLYNDN-----------QVFAK-----YNVSR--LQPYLKLRQALLELRPAKN------- 152
Query: 364 VVIVGL----KESSTGDTLCSLSENIQLENIETPIPV--ISISIEPIFKNDQEKLLNILQ 417
V+I G+ K D LS +Q + + +++ N E +L +LQ
Sbjct: 153 VLIDGVLGSGKTWVALDVC--LSYKVQCKM---DFKIFWLNLK----NCNSPETVLEMLQ 203
Query: 418 KFC---------KEDPSLLLSINNNTGETILSG--MGELHLE--IIVD-----RILKENN 459
K + D S + + ++ + L + + +++ + N
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 460 IKTKISKPQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISL---ENKENFIFK 516
+ KI ++T K + H+ + ++L E K +
Sbjct: 264 LSCKI-------------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 517 SEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYP-VIK-IKVFLVNGSFHSVDSSEYAFKN 574
+ +P+E + N P + I + +G + + + +K+
Sbjct: 311 LDCRPQDLPRE---------VLTTN-------PRRLSIIAESIRDG----LATWDN-WKH 349
Query: 575 AAAIALKDALKKANSY-ILEP-----------IMKVEVNLPSEFLGIVVGDINKKRGIIN 622
L ++ S +LEP + ++P+ L ++ D
Sbjct: 350 VNCDKLTTIIES--SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD--------- 398
Query: 623 TIIDHENFKIINSYIPLRELFGYSTDLRSNTKGTIG----HVD-HGKTTLTAALTKVSSE 677
+I + ++N +L YS + + TI +++ K AL + +
Sbjct: 399 -VIKSDVMVVVN------KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 678 IYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCPGHAD----------- 726
Y + FD+ D P ++ SH+ + H+ H +
Sbjct: 452 HY-NIPKTFDSDDLIPPYLDQYF---YSHIGH--------HLKNIEHPERMTLFRMVFLD 499
Query: 727 --YIKNMITGAAQMDGAILVCSAVDGPMPQT----REHI-----LLARQVGVPNIVVFLN 775
+++ I + D S Q + +I R V I+ FL
Sbjct: 500 FRFLEQKI----RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN--AILDFLP 553
Query: 776 KA--DCVQDKELLDLVEMEIRELLTEYDF 802
K + + K DL+ + L+ E +
Sbjct: 554 KIEENLICSKY-TDLLRI---ALMAEDEA 578
Score = 61.8 bits (149), Expect = 1e-09
Identities = 54/465 (11%), Positives = 138/465 (29%), Gaps = 119/465 (25%)
Query: 1 MKNKVLYFR-NIGIIAH--VDAGKTTTTERILFYSGSSHKI-----GEVH-----HGTTI 47
++ +L R ++ + +GKT + S+K+ ++ + +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVC----LSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 48 TDWMQQEQERGITIT-------SASVSIFWEVNKFKYMI-NIIDTPGHVDFTIEVERSLR 99
++ Q+ I S +I ++ + + ++ + + E L
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-------ENCLL 248
Query: 100 VLDGA--------------VIIICASSGIQPQTETVWFQSQKYKVPKMIFVNK------M 139
VL +++ + T+ + + + + +
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQV---TDFL--SAATTTHISLDHHSMTLTPDEV 303
Query: 140 DRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIIN--KKSFFWKENSII--- 194
+ Y +C + P +I I E+ + + K K +II
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 195 IKNIDKDQLSAFDYYNEL------------MLETL-----SNNDEFFLEKYIN------- 230
+ ++ + ++ L +L + ++ + K
Sbjct: 363 LNVLEPAEYR--KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 231 ---NNYSINDIKNSIR-----KLVLKNKII---PIMCGSSLKNKGIEFLLNSICEYLPSP 279
+ SI I ++ + L I+ I + +L ++
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--G 478
Query: 280 YDVDFKNNDYNINLNSNKFVSLVF---KIFHD--------PFLGSLSFIRIYSGFIKVGD 328
+ + + + L F+ F KI HD L +L ++ Y +I D
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 329 LVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESS 373
Y + + IL ++++ + + D++ I + E
Sbjct: 539 PKY------ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Score = 57.2 bits (137), Expect = 3e-08
Identities = 71/528 (13%), Positives = 159/528 (30%), Gaps = 113/528 (21%)
Query: 493 GQYGHVVIRIEPISLEN-KENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGYPVI 551
G++ + I + + +NF K + + K I+++ ++
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKD-----------VQDMPKSILSKEEIDHIIMSKDA 60
Query: 552 KIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVV 611
+ F ++ S + + +++ L+ +++ PI K E PS + +
Sbjct: 61 VSGTLRL---FWTLLSKQ---EEMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMMTRMYI 113
Query: 612 GDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLRSNTK----GTIGHVDHGKTTL 667
++ + N + Y+ LR+ +LR G +G GKT +
Sbjct: 114 EQRDRLYNDNQVFAKY-NVSRLQPYLKLRQAL---LELRPAKNVLIDGVLGS---GKTWV 166
Query: 668 TAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHV-DCPGHAD 726
+ ++ I + ++ +C
Sbjct: 167 ALDV-----------CLSYKVQCKMD----FKI--------------FWLNLKNCNSPET 197
Query: 727 YIKNMITGAAQMDGAILVCSAVDGPMP--------QTREHILLARQVGVPNIVVFLNKAD 778
++ + Q+D S D Q LL + N ++ L
Sbjct: 198 VLEMLQKLLYQIDPNW--TSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVL---L 251
Query: 779 CVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTT---SIKKLL 835
VQ+ + + + + LLT + T + + + D + + T LL
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTR--FKQVTDFLSAATTTHISL-DHHSMTLTPDEVKSLLL 308
Query: 836 DVLDSSIPT-PNRITD-KPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQT 893
LD P + P +S + + N + +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRR--------LSIIAESIRDGLAT--WDNWKHVNCDKLTTI 358
Query: 894 IKTTITGIE--MFKKTLDEGLA--GENVGI-------LLRSVKREEVER-GQVLAKIGSI 941
I++++ +E ++K D L+ + I + V + +V L K +
Sbjct: 359 IESSLNVLEPAEYRKMFDR-LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 942 K------SYNIFECEVYILSKEEGGR--HTPFFNGYKPQFYFRTTDVT 981
+ + +I + + K E H + Y F + D+
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Score = 49.1 bits (116), Expect = 7e-06
Identities = 78/659 (11%), Positives = 182/659 (27%), Gaps = 238/659 (36%)
Query: 357 DAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISIS-IEPIFK--NDQEKLL 413
+ DI+ + +++ + C +++Q + P ++S I+ I + L
Sbjct: 15 QYQYKDILSV--FEDAFVDNFDC---KDVQ----DMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 414 NILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKE 473
+ LLS + + + ++ + ++ I E S Y E
Sbjct: 66 RLF--------WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP---SMMTRMYIE 114
Query: 474 SIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIE 533
++ + K + V R++P +
Sbjct: 115 QRDRLYNDNQVFAKYN---------VSRLQPYL------------------------KLR 141
Query: 534 KGIMN-QINYGVVL-GYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKANSYI 591
+ ++ + V++ G V GS + A
Sbjct: 142 QALLELRPAKNVLIDG----------VLGSGKTW---------VALDVCLSY-------- 174
Query: 592 LEPIMKVEVNLPSEFLGIVVGDINKKRGIIN------TIIDHENFKIINSY---IPLREL 642
KV+ + + + + + N ++ ID N+ + + I LR
Sbjct: 175 -----KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP-NWTSRSDHSSNIKLR-- 226
Query: 643 FGYSTDLRSNTKGTIGHVDHGKTTLTAALTKV-SSEIYGGEVRAFDTIDNAPEEKERGIT 701
+++ + + + L L V +++ AF+
Sbjct: 227 ---IHSIQAELRRLLKSKPYENCLLV--LLNVQNAKA----WNAFN-------------- 263
Query: 702 ISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILL 761
+ C K ++T TR
Sbjct: 264 -----------------LSC-------KILLT---------------------TR----- 273
Query: 762 ARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY------DFDGENTKI---VIG 812
V + + D + L E++ LL +Y D E +
Sbjct: 274 --FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL- 330
Query: 813 SALLALEGKDD----NQLGTTSIKKLLDVLDSSI----PTPNR-ITDKPFLMPIEDVFSI 863
+++A +D + + KL +++SS+ P R + D+ + P
Sbjct: 331 -SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSA--- 385
Query: 864 SGRGTVVTGKIERGIVK----NGEEIEIVGYKQTIKTTITGIEMFKKTL-DEGLAGENVG 918
I ++ + + ++ + ++ K +L ++ +
Sbjct: 386 ---------HIPTILLSLIWFDVIKSDV----MVVVN-----KLHKYSLVEKQPKESTIS 427
Query: 919 I--LLRSVKREEVERGQVLAKIGSIKSYNIFECEVYILSKEEGGRHTPFFNGYKPQFYF 975
I + +K + + I + YNI + + P+ + Y FY
Sbjct: 428 IPSIYLELKVKLENEYALHRSI--VDHYNIPKT------FDSDDLIPPYLDQY---FYS 475
Score = 38.7 bits (89), Expect = 0.012
Identities = 30/213 (14%), Positives = 68/213 (31%), Gaps = 73/213 (34%)
Query: 61 ITSASVSIFWE----------VNKF-----------KYMINI----IDTPGHVDFTIEVE 95
I + +S+ W VNK + I+I ++ ++ +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 96 RSL----RVLDGAVIIICASSGIQPQTETVWF-----------QSQKYKVPKMIFVN--- 137
RS+ + + I P + ++ ++ + +M+F++
Sbjct: 447 RSIVDHYNIPKTF----DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 138 ---KMDRIGANYN------NCIIDIK--KKFNCIVLPINFNIGIEENYEGIV-DIINKKS 185
K+ +N N + +K K + I N + YE +V I++
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPY------ICDN---DPKYERLVNAILD--- 550
Query: 186 FFWKENSIIIKNIDKD--QLSAFDYYNELMLET 216
F K +I + D +++ + E
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.1 bits (158), Expect = 1e-10
Identities = 69/389 (17%), Positives = 117/389 (30%), Gaps = 154/389 (39%)
Query: 124 Q-SQK-------YK---VPKMIFVNKMDR-IGANYNNCIIDIKKKFNCIVLPINFNIG-- 169
Q SQ+ YK + ++ N+ D Y I+DI N + L I+F G
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVW-NRADNHFKDTYGFSILDIVIN-NPVNLTIHFG-GEK 1680
Query: 170 ---IEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLS-AFDYYNELMLETLSNNDEF-- 223
I ENY ++ E I K I++ S F L+ T +F
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEK--IFKEINEHSTSYTFRSEKGLLSAT-----QFTQ 1733
Query: 224 ---FLEKYINNNYSINDIKNSIRKLVLKNK-IIP---IMCGSSLKNKGIEFLLNSICEY- 275
L + LK+K +IP G SL G EY
Sbjct: 1734 PALTL-----MEKAA------FE--DLKSKGLIPADATFAGHSL---G---------EYA 1768
Query: 276 -LPSPYDV-DFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNS 333
L S DV ++ V +VF R G +
Sbjct: 1769 ALASLADVMSIES-----------LVEVVFY-------------R--------GMTMQV- 1795
Query: 334 TKKVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETP 393
A + ++ +++G ++ + +
Sbjct: 1796 ---------------AVPRDELGRSNYG----MIAINPGRVAASFS-------------- 1822
Query: 394 IPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSI-NNNT-GETILSGMGELH-LEII 450
QE L ++++ K L+ I N N + ++ G+L L+ +
Sbjct: 1823 ---------------QEALQYVVERVGKRT-GWLVEIVNYNVENQQYVAA-GDLRALDTV 1865
Query: 451 VDRILKENNI-KTKISKPQVSYK-ESIKK 477
+ +L + K I + Q S E ++
Sbjct: 1866 TN-VLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 62.0 bits (150), Expect = 1e-09
Identities = 82/512 (16%), Positives = 156/512 (30%), Gaps = 165/512 (32%)
Query: 219 NNDEFFLE-KYINNNYS--INDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEY 275
N D++F E + + Y + D+ + L I + + +G+ L E+
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAET-LSELIRTTLDAEKVFTQGLNIL-----EW 218
Query: 276 LPSPYDVDFKNNDYNINLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTK 335
L +P + + DY L S +S P +G + Y K+
Sbjct: 219 LENP--SNTPDKDY---LLSI-PISC-------PLIGVIQLAH-YVVTAKLLGFTP---- 260
Query: 336 KVKEKIFRILRMFANSKKDINDAHFGDIVVIVGLKESSTGDTLCSLSEN-------IQLE 388
++ L+ + H +V V + E+ + ++ I +
Sbjct: 261 ---GELRSYLK--GAT------GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 389 NIETPIPVISISIEPIFKNDQEKLLNILQKFCKED---PSLLLSINNNTGETILSGMGEL 445
E P S+ +IL+ + + PS +LSI S + +
Sbjct: 310 CYEA-YPNTSLP------------PSILEDSLENNEGVPSPMLSI---------SNLTQE 347
Query: 446 HLEIIVDRI---LKENNIKTKISKPQVSYKESIKK-IVTQEGKYIKQSGGKGQYGHVVIR 501
++ V++ L ++ +S K +V+ G
Sbjct: 348 QVQDYVNKTNSHLPAGK---QVE---ISLVNGAKNLVVS---------------GP---- 382
Query: 502 IEPISLENKENFIFKSEIIGGSIPKEF----IPAIEKGIMNQINYGVVLGYPVIKIKV-- 555
P SL + P IP E+ K+K
Sbjct: 383 --PQSLYG-----LNLTLRKAKAPSGLDQSRIPFSER-----------------KLKFSN 418
Query: 556 -FL-VNGSFHSVDSSEYAFKNAAAIALKDALKKANSYILEPIMKVEVNLPSEFLGIVVGD 613
FL V FHS L A+ I + ++K V+ ++ + I V D
Sbjct: 419 RFLPVASPFHS----HL-------------LVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 614 INKKRGIINTIIDHENFKIINSYIPLR---ELFGYSTDLRSNTKGTIGHV---DHGKTTL 667
D + ++++ I R + + T+ H+ G +
Sbjct: 462 TF----------DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG 511
Query: 668 TAALTKVSSEIYGGEVRAFDTIDNAPEEKERG 699
LT + + G V T+D P++ + G
Sbjct: 512 LGVLTHRNKDGTGVRVIVAGTLDINPDD-DYG 542
Score = 61.6 bits (149), Expect = 1e-09
Identities = 58/330 (17%), Positives = 98/330 (29%), Gaps = 132/330 (40%)
Query: 441 GMG-ELHLEIIV--------DRILKENNIKTKISKPQVSYKESIKKIVTQEGK--YIKQS 489
GMG +L+ D K+ Y SI IV I
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDT------------YGFSILDIVINNPVNLTIHFG 1677
Query: 490 GGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAI-----------EKGIMN 538
G KG+ IR EN IF++ + G ++ I EKG+++
Sbjct: 1678 GEKGKR----IR------ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727
Query: 539 Q----------INYGVVLGYPVIKIKVFLVNGSF---HSVDSSEYAFKNA-AAIA----L 580
+ + +K K + + HS+ EYA A A++A +
Sbjct: 1728 ATQFTQPALTLMEKAA---FEDLKSKGLIPADATFAGHSL--GEYA---ALASLADVMSI 1779
Query: 581 KDALKKANSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLR 640
+ ++ +V RG + +P
Sbjct: 1780 ESLVE-----------------------VV-----FYRG-----------MTMQVAVPRD 1800
Query: 641 ELFGYSTDLRSNTKGTIGHVDHGKTTLTAALTKVSS------EI--Y---------GGEV 683
EL + + + G + + L + +V EI Y G++
Sbjct: 1801 ELGRSNYGMIAINPGRVA-ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDL 1859
Query: 684 RAFDTIDNAPEE-KERGITIS----TSHVE 708
RA DT+ N K + I I + +E
Sbjct: 1860 RALDTVTNVLNFIKLQKIDIIELQKSLSLE 1889
Score = 59.3 bits (143), Expect = 7e-09
Identities = 99/643 (15%), Positives = 192/643 (29%), Gaps = 249/643 (38%)
Query: 369 LKESSTGDTLCSLSENIQLENIETPIPV---------ISISIEPIFKNDQEKLLN-ILQK 418
L+E L +E ++ E P +S +EP +++LN L +
Sbjct: 33 LQEQFN-KILPEPTEGFAADD-EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 419 FCKEDPSLLLSINNNTGETILSGMGELH-----LEIIVD-RILKENNI-------KTKIS 465
F E+ L G ++H L D ++K + +
Sbjct: 91 F--EN-------------CYLEG-NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 466 KPQVSYKES--IKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEI---- 519
+P S + + + + GG+G N +++ F+ E+
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQG---------------NTDDY-FE-ELRDLY 177
Query: 520 -IGGSIPKEFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAI 578
+ + I + L ++D+ + + +
Sbjct: 178 QTYHVLVGDLIKFSAE---------------------TLSELIRTTLDAEKVFTQ---GL 213
Query: 579 ALKDALKKANS-----YILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKII 633
+ + L+ ++ Y+L + ++ P +G+ + H
Sbjct: 214 NILEWLENPSNTPDKDYLLS----IPISCP--LIGV-------------IQLAH------ 248
Query: 634 NSYIPLRELFGYST-DLRSNTKGTIGHVDHGKTTLTAALTKVSSE--------------- 677
Y+ +L G++ +LRS KG GH + +TA +
Sbjct: 249 --YVVTAKLLGFTPGELRSYLKGATGH---SQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 678 IYGGEVR---AF-----------DTIDNAPEEKE-------RGITIST--SHVEYESENK 714
+ G VR A+ D+++N E +T +V N
Sbjct: 304 FFIG-VRCYEAYPNTSLPPSILEDSLEN--NEGVPSPMLSISNLTQEQVQDYVNKT--NS 358
Query: 715 HYAHVDCPGHAD-YI------KNM-ITGAAQ-MDGAILVCSAVDGPMP--QTREHILLA- 762
H P I KN+ ++G Q + G L P Q+R I +
Sbjct: 359 HL-----PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR--IPFSE 411
Query: 763 RQ---------VGVPNIVVF----LNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKI 809
R+ V P F L A D DLV+ + F+ ++ +I
Sbjct: 412 RKLKFSNRFLPVASP----FHSHLLVPA---SDLINKDLVKNNV-------SFNAKDIQI 457
Query: 810 -VIGSALLALEGKDDNQLGTTSIKKLLDVLDSSIPTPNRITDKPFLMPIEDVFSIS---- 864
V + +G D L + ++++D I P F +
Sbjct: 458 PVYDTF----DGSDLRVLSGSISERIVDC----------IIRLPVKWETTTQFKATHILD 503
Query: 865 -GRGTV-----VTGKIE--RGI-------VKNGEEIEIVGYKQ 892
G G +T + + G+ + + + G+KQ
Sbjct: 504 FGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDD-YGFKQ 545
Score = 57.0 bits (137), Expect = 4e-08
Identities = 111/693 (16%), Positives = 208/693 (30%), Gaps = 261/693 (37%)
Query: 241 SIRKLVLKN-KI---IPI-----MCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNI 291
S R L L + + + + S L+ +F + LP P + F +D
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQE---QFN-----KILPEPTE-GFAADD--- 52
Query: 292 NLNSNKFVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFR-ILRMFAN 350
+ LV K FLG + V LV S +++ L F N
Sbjct: 53 EPTTP--AELVGK-----FLG----------Y--VSSLVEPSKVGQFDQVLNLCLTEFEN 93
Query: 351 SKKDINDAHFGDIVVIVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEPIFKNDQE 410
+ ND H + L L+ +T + + + KN
Sbjct: 94 CYLEGNDIH----ALAAKL-----------------LQENDTTLV----KTKELIKNYIT 128
Query: 411 KLLNILQKFCKEDPSLLLSINNNTGE----TILSGMG-------ELHLEIIVDRILKENN 459
+ + F K+ S L G I G G EL R L +
Sbjct: 129 ARIMAKRPFDKKSNSALFR-AVGEGNAQLVAIFGGQGNTDDYFEEL-------RDLYQ-- 178
Query: 460 IKTKISKPQVSYKESIKKIVTQEGKYIKQ-----SGGKGQYGHVV-----IRIEPISLEN 509
+Y + ++ + + + + + + + P + +
Sbjct: 179 ----------TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE-NPSNTPD 227
Query: 510 KENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGV---VLGYPVIKIKVFLVNGSFHS-- 564
K+ + SIP P I G++ +Y V +LG+ +++ +L + HS
Sbjct: 228 KDYLL--------SIPISC-PLI--GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 565 ---------VDSSEYAFKNAAAIALK-------DALKKANSYILEPIM---KVEVN--LP 603
DS E +F + A+ + + L P + +E N +P
Sbjct: 277 LVTAVAIAETDSWE-SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 604 SEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRE-----LF---------GYSTDL 649
S L I ++ +++ + ++ NS++P + L G L
Sbjct: 336 SPMLSIS--NLTQEQ--VQDYVNK-----TNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTID--NAPEEKERGITISTSHV 707
L L K +A +D P ER + S
Sbjct: 387 YG---------------LNLTLRKA---------KAPSGLDQSRIPFS-ERKLKFSNR-- 419
Query: 708 EYESENKHYAHVDCPGHADYIKNMITGAAQMDGAI-LVCSAVDGPMPQTREHILL-ARQV 765
+ V P H+ + A L+ + + ++ A+ +
Sbjct: 420 --------FLPVASPFHSHL----------LVPASDLINKDL------VKNNVSFNAKDI 455
Query: 766 GVPNIVVF--LNKAD-CVQDKELL-DLVEMEIR-----ELLTEY------DF-------- 802
+P V+ + +D V + +V+ IR E T++ DF
Sbjct: 456 QIP---VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512
Query: 803 --------DGENTKIVIGSALLALEGKDDNQLG 827
DG ++++ L+ D+ G
Sbjct: 513 GVLTHRNKDGTGVRVIVAG---TLDINPDDDYG 542
Score = 52.7 bits (126), Expect = 7e-07
Identities = 61/404 (15%), Positives = 117/404 (28%), Gaps = 169/404 (41%)
Query: 560 GSFHSV-------DSSEYAFKNAAAIALKDALKKANSYILE----PIMKVEVNLPSEFLG 608
GS +S+ A +D +A+++ + I+ + +N P L
Sbjct: 1625 GS-QEQGMGMDLYKTSKAA---------QDVWNRADNHFKDTYGFSILDIVINNPVN-LT 1673
Query: 609 IVVGDINKKRGIINTIIDHENF------KIINSYIPLRELFGYSTDLRSNTKGTIGHVDH 662
I G K + I EN+ I++ + ++F + +T T +
Sbjct: 1674 IHFGGE-KGKRI------RENYSAMIFETIVDGKLKTEKIFKEINE--HSTSYTFRS-EK 1723
Query: 663 GKTTLTA----ALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAH 718
G + T ALT + + K +G+ + +A
Sbjct: 1724 GLLSATQFTQPALTLMEKAAF----EDL---------KSKGLI---------PADATFA- 1760
Query: 719 VDCPGHA--DYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNK 776
GH+ +Y AA L A V ++
Sbjct: 1761 ----GHSLGEY-------AA------LASLA------------------DV------MSI 1779
Query: 777 ADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLD 836
L+++V R G + +D+ + +
Sbjct: 1780 ES------LVEVVF--YR-----------------GMTMQVAVPRDELGRSNYGMIAI-- 1812
Query: 837 VLDSSIPTPNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGY----KQ 892
P R+ E + + +ER + G +EIV Y +Q
Sbjct: 1813 -------NPGRVAAS---FSQEALQYV----------VERVGKRTGWLVEIVNYNVENQQ 1852
Query: 893 TIKTTITG----IEMFKKTLDEGLAGENVGI--LLRSVKREEVE 930
+ G ++ L+ + + + I L +S+ EEVE
Sbjct: 1853 YV---AAGDLRALDTVTNVLNF-IKLQKIDIIELQKSLSLEEVE 1892
Score = 49.3 bits (117), Expect = 8e-06
Identities = 93/510 (18%), Positives = 152/510 (29%), Gaps = 176/510 (34%)
Query: 7 YF---RNIGII--AHVDAGKTTTTERILFYSGSSHKIGEVH-HGTTITDWMQQEQERGIT 60
YF R++ V + E + ++ +V G I +W++
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 61 --ITSASVS---IFWEVNKF-KYMI--NIID-TPGHVDFTIEVERSLRVLDG-------A 104
+ S +S I V + Y++ ++ TPG E+ L+ G A
Sbjct: 229 DYLLSIPISCPLIG--VIQLAHYVVTAKLLGFTPG------ELRSYLKGATGHSQGLVTA 280
Query: 105 VIIICASSGIQPQTETVW--FQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVL 162
V I S W F K ++F IG C + + L
Sbjct: 281 VAIAETDS---------WESFFVSVRKAITVLF-----FIGVR---C----YEAYPNTSL 319
Query: 163 PINFNIGIEENYEGIVDIINKKSFFWKENSII-IKNIDKDQLSAFDYYNELMLETLSNND 221
P + EN EG+ + ++ I N+ ++Q+ + + N
Sbjct: 320 PPSILEDSLENNEGV------------PSPMLSISNLTQEQV-------QDYVNKT--NS 358
Query: 222 EFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCG--SSLKNKGIEFLLNSICEYLPSP 279
K + I+ + N + LV+ G SL LN +P
Sbjct: 359 HLPAGKQV----EIS-LVNGAKNLVV--------SGPPQSLYG------LNLTLRKAKAP 399
Query: 280 YDVD------------FKNNDYNINLNSNKFVSL-VFKIFHDPFLGSLSFIRIYSGFIKV 326
+D F SN+F L V FH L
Sbjct: 400 SGLDQSRIPFSERKLKF----------SNRF--LPVASPFHSHLL--------------- 432
Query: 327 GDLVYNSTKKVKEKIFRILRMFANSKKDIN-DAHFGDIVVIVGLKESSTGDTLCSLSENI 385
+ I + L K +++ +A DI + V ++ G L LS +I
Sbjct: 433 --------VPASDLINKDL-----VKNNVSFNAK--DIQIPV--YDTFDGSDLRVLSGSI 475
Query: 386 QLENIETPIPVISISIEPIF--KNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMG 443
E I V I P+ Q K +IL F P + T G G
Sbjct: 476 -SERI-----VDCIIRLPVKWETTTQFKATHILD-F---GPGGASGLGVLTHR-NKDGTG 524
Query: 444 ELHLEIIVDRILKENNIKTKISKPQVSYKE 473
+ +IV L N +K+
Sbjct: 525 ---VRVIVAGTLDIN------PDDDYGFKQ 545
Score = 45.8 bits (108), Expect = 8e-05
Identities = 85/508 (16%), Positives = 144/508 (28%), Gaps = 195/508 (38%)
Query: 557 LVNGSF-HS--VDSSEYAFKNAAAIALKDALKK-----ANSYIL--EPIMKVEVNLPSEF 606
L +GS H V ++ + A L++ K + EP E L +F
Sbjct: 11 LSHGSLEHVLLVPTASFF----IASQLQEQFNKILPEPTEGFAADDEPTTPAE--LVGKF 64
Query: 607 LGIVVGDINKKRG-----IINTIIDHENFKIINSYIPLRELFGYSTDLRSNTKGTIGHVD 661
LG V + + ++N + F+ N Y L N D
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTE--FE--NCY------------LEGN--------D 100
Query: 662 -HGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVD 720
H L A L ++ K + + I K+Y
Sbjct: 101 IH---ALAAKL---------------LQENDTTLVKTKEL-I-----------KNY---- 126
Query: 721 CPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL------ 774
A P + L R VG N +
Sbjct: 127 ------I-------TA--------RIMAKRPFDKKSNSALF-RAVGEGNAQLVAIFGGQG 164
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSAL--LALEGKDDNQLGTTSIK 832
N D + E+R+L Y + L L D ++ T +
Sbjct: 165 NTDDYFE----------ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 833 KLLDVLDSSIPTPNRITDKPFL------MPIEDVFSISGRGTVVTGKIERGIVKNGEEIE 886
+L+ L++ TP DK +L P+ I G++ +
Sbjct: 215 -ILEWLENPSNTP----DKDYLLSIPISCPL----------------I--GVI------Q 245
Query: 887 IVGYKQTIKTT-ITGIEMFKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIKS-Y 944
+ Y T K T E+ +G G + G++ +A+ S +S +
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYL--KGATGHSQGLVT----------AVAIAETDSWESFF 293
Query: 945 NIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDV--TGICKLPENVE-----MV---- 993
+ +L FF G + + T + + + EN E M+
Sbjct: 294 VSVRKAITVL----------FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 994 LPGDNI-----KLNVTLLSSIAIEIGLR 1016
L + + K N L + +EI L
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Score = 43.9 bits (103), Expect = 3e-04
Identities = 44/261 (16%), Positives = 85/261 (32%), Gaps = 88/261 (33%)
Query: 2 KNKVLYF-----RNI-----GIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWM 51
N ++F + I +I TE+I E++ +T +
Sbjct: 1670 VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF---------KEINEHSTSYTFR 1720
Query: 52 QQEQERGIT------ITSASVSIFWEVNKFKYMINIIDTP-GHVDFTIEVERSLRVLDG- 103
++ T +T + F E K K +I T GH SL G
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAF-EDLKSKGLIPADATFAGH---------SL----GE 1766
Query: 104 --AVIIICASSGIQPQTETVW--FQ---SQKYKVPK---------MIFVNKMDRIGANYN 147
A + + + + V F + + VP+ MI +N R+ A+++
Sbjct: 1767 YAA---LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN-PGRVAASFS 1822
Query: 148 -----NCIIDIKKKFNCIVLPINFNI--------GIEENYEGIVDIINKKSFFWKENSII 194
+ + K+ +V +N+N+ G + + +++N
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK--------- 1873
Query: 195 IKNIDKDQLSAFDYYNELMLE 215
++ ID +L L LE
Sbjct: 1874 LQKIDIIELQK-----SLSLE 1889
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative,
midwest center for structural genomics, GTP-BIN
nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio
parahaemolyticus}
Length = 332
Score = 42.1 bits (99), Expect = 7e-04
Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 588 NSYILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKI-INSYIPLRELFGYS 646
+ ++EP V +++ E G ++ +I + G + + ++ ++ +P R L G+
Sbjct: 120 DGQLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRGLIGFQ 179
Query: 647 TDLRSNTKGT 656
T+ + T G+
Sbjct: 180 TEFMTLTSGS 189
Score = 32.9 bits (75), Expect = 0.55
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 34/129 (26%)
Query: 366 IVGLKESSTGDTLCSLSENIQLENIETPIPVISISIEP-----IFKND------------ 408
GL E DT+C+ +E +P +S+ EP N
Sbjct: 3 ATGLGELKISDTICA------QNAVE-ALPALSVD-EPTVTMTFQVNTSPFAGXEGXFVT 54
Query: 409 QEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKEN----NIKTKI 464
+L L+K + +L + ++ + +SG GELHL I++ EN + +
Sbjct: 55 SRNILERLEKELVHNVALRVEQTDDPDKFRVSGRGELHLSILI-----ENMRREGFELAV 109
Query: 465 SKPQVSYKE 473
S+P+V E
Sbjct: 110 SRPEVIIXE 118
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 36.7 bits (86), Expect = 0.034
Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 12/125 (9%)
Query: 79 INIIDTPG--HVDFTIE---VERSLRVLDGAVIIIC---ASSGIQPQTETVWFQSQKYKV 130
+ ++DT G +E VERS + + A +++ A++G + ++ ++ K
Sbjct: 274 VQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIY---EQVKH 330
Query: 131 PKMIFV-NKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWK 189
+I V NK+D + + + + GI+ I++I+
Sbjct: 331 RPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQTGKVQAA 390
Query: 190 ENSII 194
+ +
Sbjct: 391 DMDLA 395
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 35.3 bits (80), Expect = 0.12
Identities = 27/175 (15%), Positives = 54/175 (30%), Gaps = 29/175 (16%)
Query: 694 EEKERGITISTSHVEYESE--NKHYAHVDCPG------HADYIKNMITGAAQMDGAILVC 745
E+K+ + + VEY K VD PG + + + V
Sbjct: 152 EKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNC---HAILFVM 208
Query: 746 SAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQD---------------KELLDLVE 790
A R ++ + + +N D V++ L +
Sbjct: 209 RASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFN 268
Query: 791 MEIRELLTEYDFDGENTKIVIGSALLALEGK---DDNQLGTTSIKKLLDVLDSSI 842
+ E T + + ++ S++ AL + L T K +D L++ +
Sbjct: 269 ANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323
Score = 34.2 bits (77), Expect = 0.23
Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 21/153 (13%)
Query: 14 IAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSAS-------- 65
+ D T +L Y + G + Q + TI A
Sbjct: 94 LLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEK 153
Query: 66 ---------VSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQP 116
+ + + + I I+D+PG D E SL ++ I+ QP
Sbjct: 154 KQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQP 213
Query: 117 QTET---VWFQSQKYKVPKMIFV-NKMDRIGAN 145
T K + + F+ N D++ +
Sbjct: 214 CTLGERRYLENYIKGRGLTVFFLVNAWDQVRES 246
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 33.3 bits (77), Expect = 0.33
Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 30/108 (27%)
Query: 706 HVEYESENKHYAHVDCPGHADYI------KNMIT--GAAQMDGAILVCSAVDGPMPQTRE 757
+V Y++EN Y+ N + +D A+LV SAV P
Sbjct: 56 YVVYQAENDKEG---------YLMEIKERTNELIRPPICNVDQAVLVFSAVQ---PSFST 103
Query: 758 HIL-----LARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEY 800
+L L + I+ K D ++D++ D I+ +Y
Sbjct: 104 ALLDRFLVLVEANDIQPIICI-TKMDLIEDQDTED----TIQAYAEDY 146
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 33.4 bits (76), Expect = 0.35
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 14/117 (11%)
Query: 700 ITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQM-----DGAILVCSAVDGPMPQ 754
I + SH+ + N DC G +++N T I V + +
Sbjct: 39 IDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLK 97
Query: 755 TREH---ILLARQVGVPNIV--VFLNKADCVQD---KELLDLVEMEIRELLTEYDFD 803
E L + P+ V L+K D VQ +EL ++ + E +E+ F
Sbjct: 98 DIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFP 154
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 32.4 bits (74), Expect = 0.43
Identities = 30/140 (21%), Positives = 46/140 (32%), Gaps = 28/140 (20%)
Query: 19 AGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYM 78
+GKTT + ++ + GE+ T + + I EV FK
Sbjct: 25 SGKTTNLKW-IYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG--------EVKGFKTR 75
Query: 79 INIIDTPGHVDFTIEVERSLRVL-----DGAVIII---------CASSGIQPQTETVWFQ 124
++ PG V + + R L DG V + A S + +
Sbjct: 76 FHLYTVPGQVFY-----NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG 130
Query: 125 SQKYKVPKMIFVNKMDRIGA 144
VP +I VNK D A
Sbjct: 131 LTLDDVPIVIQVNKRDLPDA 150
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.62
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 25/43 (58%)
Query: 239 KNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLP--SP 279
K +++KL +SLK L Y +P
Sbjct: 19 KQALKKL-----------QASLK------L------YADDSAP 38
Score = 29.1 bits (64), Expect = 4.8
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 561 SFHSVDSS--EYAFKNAAAIALKDALK 585
+ + +S YA +A A+A+K ++
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATME 47
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 32.7 bits (74), Expect = 0.70
Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 3/70 (4%)
Query: 79 INIIDTPGHVDFTIEVERSL---RVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIF 135
+ D PG + L + + II +++ + + K
Sbjct: 122 VVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFV 181
Query: 136 VNKMDRIGAN 145
K+D N
Sbjct: 182 RTKVDSDITN 191
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 31.6 bits (72), Expect = 0.91
Identities = 31/155 (20%), Positives = 52/155 (33%), Gaps = 47/155 (30%)
Query: 663 GKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITIST--SHVEYESENKHYAHVD 720
GKT+L LT VR T+ + + + VD
Sbjct: 60 GKTSLLTLLT-------TDSVRP---------------TVVSQEPLSAADYDGSGVTLVD 97
Query: 721 CPGHA-------DYIKNMITGAAQMDGAILV--CSAVDGPMPQTREH---ILLARQV--- 765
PGH DY+K G I + + + T E IL +
Sbjct: 98 FPGHVKLRYKLSDYLKTRAKFV---KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCE 154
Query: 766 -GVPNIVVFLNKADCVQ---DKELLDLVEMEIREL 796
G+ I++ NK++ ++ D +E EI+++
Sbjct: 155 NGID-ILIACNKSELFTARPPSKIKDALESEIQKV 188
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP
binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 31.8 bits (73), Expect = 0.97
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 732 ITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEM 791
+ +DG I + AV Q + + QVG + ++ L K D + + +
Sbjct: 117 LCQRYLLDGVIALVDAVHA-DEQMNQFTIAQSQVGYADRIL-LTKTDVAGE---AEKLHE 171
Query: 792 EIREL 796
+ +
Sbjct: 172 RLARI 176
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation,
transcription; NMR {Saccharomyces cerevisiae}
Length = 109
Score = 30.1 bits (67), Expect = 1.1
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 371 ESSTGDTLCSLSENIQLE-NIETPIPVISISIEPIFKNDQEKLLNILQKFCKEDP 424
+ L I + N+ TP +IS + K Q K L Q++ + P
Sbjct: 15 ANFLSQKFPELPSGIDVNINMTTPAMMISSELAKKPKEVQLKFLQKFQEWTRAHP 69
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 31.3 bits (71), Expect = 1.2
Identities = 29/153 (18%), Positives = 50/153 (32%), Gaps = 43/153 (28%)
Query: 663 GKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHYAHVDCP 722
GKT+L LT + + G ++ VD P
Sbjct: 24 GKTSLLTLLT------TDSVRPTVVSQEPLSAADYDGSGVTL--------------VDFP 63
Query: 723 GHA-------DYIKNMITGAAQMDGAILV--CSAVDGPMPQTREH---ILLARQV----G 766
GH DY+K G I + + + T E IL + G
Sbjct: 64 GHVKLRYKLSDYLKTRAKFV---KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 120
Query: 767 VPNIVVFLNKAD---CVQDKELLDLVEMEIREL 796
+ I++ NK++ ++ D +E EI+++
Sbjct: 121 ID-ILIACNKSELFTARPPSKIKDALESEIQKV 152
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 30.9 bits (71), Expect = 1.8
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 28/109 (25%)
Query: 757 EHIL--LARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSA 814
E I + + P IVV +NK D + + + + EI + E +IV SA
Sbjct: 111 EEIYQNFIKPLNKPVIVV-INKIDKIGPAKNVLPLIDEIHKKHPELT------EIVPISA 163
Query: 815 LLALEGKDDNQLGTTSIKKLLDVLDSSIPT------PNRITDKP--FLM 855
L K N + +L+ + +P + ITD P L
Sbjct: 164 L-----KGAN------LDELVKTILKYLPEGEPLFPEDMITDLPLRLLA 201
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 30.9 bits (71), Expect = 1.8
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 30/109 (27%)
Query: 757 EHIL-LARQVGVPNIVVFLNKADCVQDKE-LLDLVEMEIRELLTEYDFDGENTKIVIGSA 814
E +L R+ P I+ +NK D VQ+K LL ++ L ++ +F IV SA
Sbjct: 106 EMVLNKLREGKAPVILA-VNKVDNVQEKADLLPHLQ----FLASQMNFL----DIVPISA 156
Query: 815 LLALEGKDDNQLGTTSIKKLLDVLDSSIPT------PNRITDKP--FLM 855
N + + ++ +P + ITD+ F+
Sbjct: 157 E-----TGLN------VDTIAAIVRKHLPEATHHFPEDYITDRSQRFMA 194
Score = 30.1 bits (69), Expect = 3.8
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 251 IIPIMCGSSLKNKGIEFLLNSICEYLP 277
I+PI S+ ++ + + ++LP
Sbjct: 151 IVPI---SAETGLNVDTIAAIVRKHLP 174
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface,
cell adhesion; 2.70A {Campylobacter jejuni subsp}
Length = 379
Score = 30.9 bits (69), Expect = 2.0
Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 1/132 (0%)
Query: 165 NFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFF 224
NF ++N + ++ K+ + N I K +S +YYN+L S
Sbjct: 80 NFKTLAKDNNDEYQELFQAKNIKIRSNEIY-KGETNTSISIKEYYNDLFKNQKSIQSNLV 138
Query: 225 LEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDF 284
E + ++DI S+ + K S + +N D+ F
Sbjct: 139 FEDFKLGEKVVSDINASLFQQDPKISSFINKLSSDSYTLSFDNSINKQENNYLDNLDIKF 198
Query: 285 KNNDYNINLNSN 296
N N N N N
Sbjct: 199 YNAKLNFNTNLN 210
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 30.6 bits (70), Expect = 2.3
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
Query: 729 KNMIT--GAAQMDGAILVCSAVDGPMPQTREHIL-----LARQVGVPNIVVFLNKADCVQ 781
KN++ A +D I+V + P+ ++L + V ++VF NK D +
Sbjct: 69 KNLLIRPKVANVDRVIIVETLKM---PEFNNYLLDNMLVVYEYFKVEPVIVF-NKIDLLN 124
Query: 782 DKELLDLVEMEIRELLTEY 800
++E E+ ++ Y
Sbjct: 125 EEEK-----KELERWISIY 138
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 30.8 bits (70), Expect = 2.5
Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 237 DIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLP 277
+ + + + K++ + S+L+ KG + + +I E LP
Sbjct: 158 EELKGLYESRYEAKVLLV---SALQKKGFDDIGKTISEILP 195
Score = 30.8 bits (70), Expect = 2.6
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 79 INIIDTPG-HVDFTIE---VERSLRVLDGA-VIIICASSGIQPQTETVWFQSQKYKVPKM 133
+ ++DTPG + VE++ RV A I+ S P + V ++ ++P +
Sbjct: 85 VTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFV 144
Query: 134 IFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN--FNIGIEE 172
+ VNK+D +G + ++ VL ++ G ++
Sbjct: 145 VVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDD 185
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 30.6 bits (70), Expect = 2.8
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 729 KNMIT--GAAQMDGAILVCSAVDGPMPQTREHIL-----LARQVGVPNIVVFLNKADCVQ 781
KN++T A +D ILV + P+T +I+ LA + + ++V NK D
Sbjct: 74 KNLLTKPHVANVDQVILVVTVKM---PETSTYIIDKFLVLAEKNELETVMVI-NKMDLYD 129
Query: 782 DKELLDLVEMEIRELLTEY 800
+ +L ++REL Y
Sbjct: 130 EDDL-----RKVRELEEIY 143
>2qoj_Z Intron-encoded DNA endonuclease I-ANII; laglidadg homing
endonuclease, hydrolase, intron homing, mitochondrion,
mRNA processing, mRNA splicing; 2.40A {Emericella
nidulans} PDB: 1p8k_Z 3eh8_A 3uvf_A
Length = 254
Score = 30.3 bits (68), Expect = 2.9
Identities = 24/209 (11%), Positives = 66/209 (31%), Gaps = 21/209 (10%)
Query: 136 VNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIII 195
V+ R I K +LPI + NK+ + + + ++
Sbjct: 56 VSFRKRNEIEMVALRIRDKNHLKSFILPIFEKYPM---------FSNKQYDYLRFRNALL 106
Query: 196 KNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIM 255
I + ++ L ++ + + + + L ++
Sbjct: 107 SGIISLEDLPDYTRSDEPLNSIESIINTSYFSAWLVGFI--EAEGCFSVYKLNKDDDYLI 164
Query: 256 CGSSLKNKGIEFLLNSICEYLPSPYDVDFKNNDYNI----NLNSNKFVSLVFKIFHDPFL 311
+ + + L+++I +YL V + + ++ S + + + L
Sbjct: 165 ASFDIAQRDGDILISAIRKYLSFTTKVYLDKTNCSKLKVTSVRSVENIIKFLQNAPVKLL 224
Query: 312 G--SLSFIRIYSGFIKVGDLVYNSTKKVK 338
G L ++ ++K + ++K+K
Sbjct: 225 GNKKLQYLL----WLKQLRKISRYSEKIK 249
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 29.6 bits (66), Expect = 3.0
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 11 IGIIAHVDAGKTTTTERIL-FYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
++ + +GKTT E+ + ++G V H + + E + A
Sbjct: 7 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVAT 66
Query: 70 WEVNKFKYMI 79
+
Sbjct: 67 AVEGDGLLQL 76
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 29.4 bits (65), Expect = 3.6
Identities = 23/172 (13%), Positives = 61/172 (35%), Gaps = 16/172 (9%)
Query: 11 IGIIAHVDAGKTTTTERIL-FYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
+ A GKTT ++++ + G + H D + + + A +
Sbjct: 9 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKP-GKDSYELRKAGAAQT 67
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
++ ++ + + +TP + ++ S +I+ + + V F+
Sbjct: 68 IVASQQRWAL-MTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGH 126
Query: 130 VPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDII 181
P+ + +++ + D+ + +L IN + EG+ D +
Sbjct: 127 RPEELVIDR------HVIAVASDVPLNLDVALLDIN-------DVEGLADFV 165
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199,
PSI-2, PR structure initiative 2; 1.86A {Agrobacterium
tumefaciens str}
Length = 317
Score = 29.9 bits (68), Expect = 4.0
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 751 PMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLV------EMEIRELL 797
P L+AR P + ++ A V+ K L + E E R L
Sbjct: 145 PEDTLTALGLIARACEKPLAAIAISPAKAVKLKAALGDIDILFMNEAEARALT 197
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.15A {Planctomyces limnophilus}
Length = 290
Score = 29.8 bits (67), Expect = 4.1
Identities = 21/156 (13%), Positives = 45/156 (28%), Gaps = 30/156 (19%)
Query: 657 IGHVDHGKTTLTAALTKVSS------EIYGGEVRAFDTIDNAPEE-----KERGITISTS 705
IG L L +++ + GI ++
Sbjct: 13 IGVFTSVDAGLGVHLEVAQDLKVPTVQVHAPHPHTRT--REHAQAFRAKCDAAGIQVTV- 69
Query: 706 HVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQV 765
+ + + YA + + + T A+++ + +E A V
Sbjct: 70 -IFGGFDGESYADIPTTARTVGLVPLETRASRVA--------------EMKEISDFASWV 114
Query: 766 GVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYD 801
G P I + + + +LV + ++LLT
Sbjct: 115 GCPAIGLHIGFVPESSSPDYSELVRV-TQDLLTHAA 149
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 29.4 bits (65), Expect = 4.6
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 89 DFTIEVERSLRVLDGA-VIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYN 147
+ + V + V+ G VI+ C +G WF + + + + G+
Sbjct: 1 EVRLSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASA--EMQGSELQ 58
Query: 148 NCIIDIKKKFNCIVLPINFNIGI 170
+ D + + L + +
Sbjct: 59 VTMHDTRGRSPPYQLDSQGRLVL 81
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin
utilization, structural genomics, PSI, Pro structure
initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP:
c.56.5.4 d.58.19.1 PDB: 2imo_A
Length = 423
Score = 29.8 bits (68), Expect = 4.6
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 10/52 (19%)
Query: 79 INIIDTPGHVDFTIEV--------ERSLRVLDGAVIIICASSGIQPQTETVW 122
+N++ PG FTI+ + L+ + IC I +
Sbjct: 276 VNVV--PGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWM 325
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 29.2 bits (65), Expect = 5.0
Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 11/120 (9%)
Query: 700 ITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQT---- 755
I + S ++ D PG D+ G + +D
Sbjct: 56 NKIYKDDISNSS-FVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALT 114
Query: 756 --REHILLARQVGVPNIV--VFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVI 811
+ A +V P++ VF++K D + D ++ +I + + D K+ +
Sbjct: 115 RLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQR-DIHQRANDDLADAGLEKLHL 172
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 29.8 bits (67), Expect = 5.3
Identities = 22/158 (13%), Positives = 46/158 (29%), Gaps = 8/158 (5%)
Query: 150 IIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLSAFDYY 209
+ +IK + F + + + WK + + + + + Y
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284
Query: 210 NELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLL 269
N L + + +EF + + I +KN S I+ L
Sbjct: 285 N-LTITERIDREEFTYSETALKSLMIEHVKN------QVFLFSKEALYSVFAEMNIKMLS 337
Query: 270 NSICEYLPSPYDVDFKNNDYNINLNSNKFVSLVFKIFH 307
S ++ + + +N N F VF+
Sbjct: 338 ISDTPFIHMVCPPSPSSFTF-LNFTQNVFTDSVFQGCS 374
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC,
transctiptional regulator, SUG binding protein,
structural genomics, PSI-2; 2.05A {Burkholderia
phymatum}
Length = 290
Score = 29.4 bits (67), Expect = 5.6
Identities = 19/140 (13%), Positives = 36/140 (25%), Gaps = 38/140 (27%)
Query: 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVE 708
L + G IG + YG ++ D R + ++T E
Sbjct: 3 LATQQLGIIGLF----------VPTFFGSYYGTILKQ---TDLELRAVHRHVVVATGCGE 49
Query: 709 YESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVP 768
+ + ++ +I DG +++ + L R
Sbjct: 50 STPREQA---------LEAVRFLIGR--DCDGVVVISHDLHDEDLD-----ELHRM-HPK 92
Query: 769 NIVVFLN------KADCVQD 782
+VFLN
Sbjct: 93 --MVFLNRAFDALPDASFCP 110
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 29.0 bits (65), Expect = 6.8
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 7/79 (8%)
Query: 719 VDCP-GHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKA 777
+D G + D I V + LA +G+ + +NK
Sbjct: 137 MDMGAGIEHLTRGTAKAV---DMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINK- 192
Query: 778 DCVQDKELLDLVEMEIREL 796
V++ + L++ + E
Sbjct: 193 --VRNIKEEKLIKKHLPED 209
>3bil_A Probable LACI-family transcriptional regulator; structural
genomics, unknown function, PSI-2, protein structure
initiative; 2.50A {Corynebacterium glutamicum atcc
13032}
Length = 348
Score = 29.1 bits (66), Expect = 7.6
Identities = 18/127 (14%), Positives = 43/127 (33%), Gaps = 35/127 (27%)
Query: 649 LRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVE 708
LRS+ TIG + + + + + V I + + I+ S+ +
Sbjct: 61 LRSSRSNTIGVI----------VPSLINHYFAAMVTE---IQSTASKAGLATIITNSNED 107
Query: 709 YESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVP 768
+ + ++ + + +DG I V + + ++ G+P
Sbjct: 108 ATTM------------SGSLEFLTSH--GVDGIICVPNEECA------NQLEDLQKQGMP 147
Query: 769 NIVVFLN 775
VV ++
Sbjct: 148 --VVLVD 152
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation,
transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A*
2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Length = 394
Score = 29.0 bits (64), Expect = 7.8
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 12/95 (12%)
Query: 486 IKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAI-----------EK 534
++ + + ++ I+ + +E+ K GG +P I + +
Sbjct: 244 MRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQP 303
Query: 535 GIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSE 569
G G G P+ ++ G + S E
Sbjct: 304 GTGGTPLAGFGYGLPISRLYAKYFQGDL-QLFSME 337
>3egc_A Putative ribose operon repressor; structural genomics, unknown
function, DNA-binding, transcri transcription
regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Length = 291
Score = 29.0 bits (66), Expect = 8.0
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 16/64 (25%)
Query: 725 ADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLN------KAD 778
+ + ++DG IL S + +++ P +V +N
Sbjct: 54 REAVGQFFER--RVDGLILAPSEGEH------DYLRTELPKTFP--IVAVNRELRIPGCG 103
Query: 779 CVQD 782
V
Sbjct: 104 AVLS 107
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 28.7 bits (65), Expect = 8.0
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 235 INDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYL 276
+ +R+ + + ++ SS KG + +I + +
Sbjct: 152 WDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP;
3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 458
Score = 28.9 bits (65), Expect = 9.0
Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 40/171 (23%)
Query: 644 GYSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEE-KERGITI 702
G + R+ H T++ T+ +S ++GG + N I +
Sbjct: 47 GCCSYHRTVL---SRHFKEPAMASTSSFTEGAS-VFGGGSNIKTAVKNIFSLYNPDIIAV 102
Query: 703 STSHV-------------EYESENKHYA-----HVDCPGHADYIKNMITGAAQMDGAILV 744
T+ + + E H + P Y+ + +TG A M I+
Sbjct: 103 HTTCLSETLGDDLPTYISQMEDAGSIPEGKLVIHTNTPS---YVGSHVTGFANMVQGIV- 158
Query: 745 CSAVDGPMPQTREHILLARQVGVPNIV-VFLNKADCVQDKELLDLVEMEIR 794
+ + I N++ F+ AD + K L + M+I
Sbjct: 159 -NYLSENTGAKNGKI---------NVIPGFVGPADMREIKRLFE--AMDIP 197
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.392
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,908,602
Number of extensions: 1041326
Number of successful extensions: 3219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2983
Number of HSP's successfully gapped: 175
Length of query: 1021
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 918
Effective length of database: 3,825,930
Effective search space: 3512203740
Effective search space used: 3512203740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)