RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5021
(1021 letters)
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 265 bits (677), Expect = 6e-82
Identities = 125/274 (45%), Positives = 186/274 (67%), Gaps = 8/274 (2%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
RNIGI AH+DAGKTTTTERIL+Y+G HKIGEVH G D+M+QE+ERGITIT+A +
Sbjct: 7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC 66
Query: 69 FWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128
FW+ + INIID PGHVDFTIEVERS+RVLDGA+++ +S G++PQ+ETVW Q++KY
Sbjct: 67 FWK----DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY 122
Query: 129 KVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFW 188
KVP++ F NKMD+ GA+ I ++++ + + IG E+ + GI+D++ K++ +
Sbjct: 123 KVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTY 182
Query: 189 KEN---SIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNY-SINDIKNSIRK 244
+ I I ++ L Y+E ++E ++ DE + KY+ + ++ +IRK
Sbjct: 183 GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRK 242
Query: 245 LVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPS 278
+ KI P+ GS+LKNKG++ LL+++ +YLPS
Sbjct: 243 GTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPS 276
Score = 134 bits (338), Expect = 1e-35
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 3/142 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYG-GEVRAFD-TIDNAPEEKERGITISTSHVEYESE 712
G H+D GKTT T + + I+ GEV T+D +E+ERGITI+ + +
Sbjct: 10 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK 69
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
+ +D PGH D+ + +DGAI+V + G PQ+ A + VP +
Sbjct: 70 DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-RIA 128
Query: 773 FLNKADCVQDKELLDLVEMEIR 794
F NK D L + M+ R
Sbjct: 129 FANKMDKTGADLWLVIRTMQER 150
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 231 bits (590), Expect = 1e-70
Identities = 130/198 (65%), Positives = 150/198 (75%), Gaps = 8/198 (4%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYG-GEVRAFDTIDNAPEEKERGITISTSHVEYESEN 713
GTIGHVDHGKTTLTAALT V++ EV+ + ID APEE+ RGITI+T+HVEYE+
Sbjct: 7 GTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 66
Query: 714 KHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVF 773
+HY+HVDCPGHADYIKNMITGAAQMDGAILV SA DGPMPQTREHILLARQVGVP IVVF
Sbjct: 67 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 126
Query: 774 LNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDN-------QL 826
+NK D V D ELLDLVEME+R+LL +Y+F G+ ++ GSALLALE N
Sbjct: 127 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 186
Query: 827 GTTSIKKLLDVLDSSIPT 844
I +LLD +D IPT
Sbjct: 187 WVDKIWELLDAIDEYIPT 204
Score = 152 bits (384), Expect = 1e-42
Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 15/205 (7%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T + + + + + EV I D +E+ RGITI +A
Sbjct: 5 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI-DKAPEERARGITINTA----H 59
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
E K + +D PGH D+ + +DGA++++ A+ G PQT +++
Sbjct: 60 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 119
Query: 130 VPKMI-FVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFW 188
VP ++ F+NK+D +D + + + + + + E V +I +
Sbjct: 120 VPYIVVFMNKVDM---------VDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLA 170
Query: 189 KENSIIIKNIDKDQLSAFDYYNELM 213
E + + D EL+
Sbjct: 171 LEQMHRNPKTRRGENEWVDKIWELL 195
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 219 bits (558), Expect = 2e-66
Identities = 122/191 (63%), Positives = 156/191 (81%), Gaps = 1/191 (0%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
GTIGHVDHGKTTLTAA+TK+ +E G + + ++ IDNAPEE+ RGITI+ +HVEY + +
Sbjct: 7 GTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAAR 66
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
HYAH DCPGHADY+KNMITG A +DG ILV +A DGPMPQTREH+LLARQ+GV ++VV++
Sbjct: 67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYV 126
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
NKAD VQD E+++LVE+EIRELLTE+ + GE T I++GSAL ALE +D LG S++KL
Sbjct: 127 NKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPE-LGLKSVQKL 185
Query: 835 LDVLDSSIPTP 845
LD +D+ IP P
Sbjct: 186 LDAVDTYIPVP 196
Score = 128 bits (322), Expect = 3e-34
Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+G I HVD GKTT T I G D +E+ RGITI +A
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGG--GAKFKKYEEIDNAPEERARGITINAA----H 58
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
E + D PGH D+ + LDG ++++ A+ G PQT +++
Sbjct: 59 VEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIG 118
Query: 130 VPKMI-FVNKMD 140
V ++ +VNK D
Sbjct: 119 VEHVVVYVNKAD 130
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 201 bits (511), Expect = 6e-59
Identities = 64/271 (23%), Positives = 129/271 (47%), Gaps = 7/271 (2%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
R + ++ H +GKTT TE +L+ +G+ + G V GTT TD+ + + T+ +
Sbjct: 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTV----RTG 58
Query: 69 FWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128
+ + + ++D PG+ DF E+ +L D A++ + A +G+Q TE W +++
Sbjct: 59 VAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL 118
Query: 129 KVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFW 188
+P+M+ V K+D+ G Y + PI+ + + G++D+ + K++ +
Sbjct: 119 GLPRMVVVTKLDKGGDYYALLEDLRSTLGPIL--PIDLPLYEGGKWVGLIDVFHGKAYRY 176
Query: 189 KENSIIIKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNY-SINDIKNSIRKLVL 247
+ + ++ + + +LE + DE LEKY+ + ++ + + V
Sbjct: 177 ENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVR 236
Query: 248 KNKIIPIMCGSSLKNKGIEFLLNSICEYLPS 278
+ + P+ S + G+ LL I E LPS
Sbjct: 237 RGLLYPVALASGEREIGVLPLLELILEALPS 267
Score = 76.9 bits (188), Expect = 7e-16
Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 3/129 (2%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIY--GGEVRAFDTIDNAPEEKERGITISTSHVEYESE 712
+GH GKTTLT AL + G T D PE K T+ T
Sbjct: 6 ALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR 65
Query: 713 NKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVV 772
+D PG+ D++ + D A++ SA G T +A ++G+P +VV
Sbjct: 66 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVV 125
Query: 773 FLNKADCVQ 781
K D
Sbjct: 126 V-TKLDKGG 133
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 195 bits (497), Expect = 2e-57
Identities = 68/231 (29%), Positives = 103/231 (44%), Gaps = 37/231 (16%)
Query: 655 GTIGHVDHGKTTLTAALT---------------KVSSEIYGGEVRAFDTIDNAPEEKERG 699
IGHVD GK+T T L K ++E+ G + +D E+ERG
Sbjct: 10 VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERG 69
Query: 700 ITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPM------- 752
ITI + ++E+ +D PGH D+IKNMITG +Q D AIL+ + G
Sbjct: 70 ITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKD 129
Query: 753 PQTREHILLARQVGVPNIVVFLNKADCVQ-DKELLDLVEMEIRELLTEYDFDGENTKIVI 811
QTREH LLA +GV ++V +NK D V+ D+ + E + + ++ + V
Sbjct: 130 GQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVP 189
Query: 812 GSALLALE-------------GKDDNQLGTTSIKKLLDVLDSSIPTPNRIT 849
S + + + G K LL+ +D +I P+R T
Sbjct: 190 ISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAID-AIEQPSRPT 239
Score = 143 bits (361), Expect = 5e-39
Identities = 52/227 (22%), Positives = 87/227 (38%), Gaps = 33/227 (14%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSG-------------SSHKIGEVHHGTTITDWMQQEQE 56
N+ +I HVD+GK+TTT +++ G ++ + D ++ E+E
Sbjct: 8 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 67
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-- 114
RGITI A KY + +ID PGH DF + D A++II G
Sbjct: 68 RGITIDIALWKFETP----KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFE 123
Query: 115 -----QPQTETVWFQSQKYKVPKMI-FVNKMDRIGANYN------NCIIDIKKKFNCIVL 162
QT + V ++I VNKMD + + + + KK
Sbjct: 124 AGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPK 183
Query: 163 PINFNIGIEENYEGIVDIINKKSFF--WKENSIIIKNIDKDQLSAFD 207
+ F N + +++ ++ W++ + K L A D
Sbjct: 184 TVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAID 230
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 162 bits (410), Expect = 2e-44
Identities = 68/296 (22%), Positives = 124/296 (41%), Gaps = 28/296 (9%)
Query: 1 MKNKVLYFRNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGIT 60
+ +KV RN+ +IAHVD GK+T T+ ++ +G T D + EQERGIT
Sbjct: 10 LMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFT--DTRKDEQERGIT 67
Query: 61 ITSASVSIFWEVNKF------------KYMINIIDTPGHVDFTIEVERSLRVLDGAVIII 108
I S ++S++ E++ ++IN+ID+PGHVDF+ EV +LRV DGA++++
Sbjct: 68 IKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVV 127
Query: 109 CASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNI 168
G+ QTETV Q+ ++ ++ +NK+DR D+ + F V +N +
Sbjct: 128 DTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIV 187
Query: 169 GIEENYEGIVDIINKKSFFWKENSIIIKNIDKDQLS-AFDYYNELMLETLSNNDEFFLEK 227
D + + + + + + + +++
Sbjct: 188 ------STYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDR 241
Query: 228 YINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVD 283
+++ K K G L+ F+L+ I + +
Sbjct: 242 LWGDSFFNPKTKKWTNKDTDAE-------GKPLERAFNMFILDPIFRLFTAIMNFK 290
Score = 114 bits (286), Expect = 4e-28
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 21/175 (12%)
Query: 639 LRELFGYSTDLRSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKER 698
+R L T++R I HVDHGK+TLT +L + + I + D +E+ER
Sbjct: 7 MRSLMDKVTNVR--NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQER 64
Query: 699 GITISTSHVEYESENKH----------------YAHVDCPGHADYIKNMITGAAQMDGAI 742
GITI ++ + SE +D PGH D+ + DGA+
Sbjct: 65 GITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGAL 124
Query: 743 LVCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELL 797
+V ++G QT + A + + V +NK D + + + ++ +
Sbjct: 125 VVVDTIEGVCVQTETVLRQALGERIKPV-VVINKVDRALLEL--QVSKEDLYQTF 176
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 154 bits (389), Expect = 5e-43
Identities = 65/220 (29%), Positives = 109/220 (49%), Gaps = 29/220 (13%)
Query: 655 GTIGHVDHGKTTLTAALT---------------KVSSEIYGGEVRAFDTIDNAPEEKERG 699
IGHVDHGK+TL L + + ++ + +D EE+ERG
Sbjct: 7 IVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERG 66
Query: 700 ITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-------M 752
+TI+ + + +E++ + +D PGH D++KNMITGA+Q D AILV SA G
Sbjct: 67 VTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVE 126
Query: 753 PQTREHILLARQVGVPNIVVFLNKADCVQ---DKELLDLVEMEIRELLTEYDFDGENTKI 809
QTREHI+LA+ +G+ ++V +NK D + D++ + ++ + + Y F+ +
Sbjct: 127 GQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRF 186
Query: 810 VIGSALLA--LEGKDDNQLGTTSIKKLLDVLDSSIPTPNR 847
V A + K +N + + L + LD + P +
Sbjct: 187 VPVVAPSGDNITHKSEN-MKWYNGPTLEEYLD-QLELPPK 224
Score = 120 bits (301), Expect = 3e-31
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 25/167 (14%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSG-------------SSHKIGEVHHGTTITDWMQQEQE 56
N+ +I HVD GK+T R+L G + E + D +++E+E
Sbjct: 5 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 64
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-- 114
RG+TI F KY IID PGH DF + D A++++ A G
Sbjct: 65 RGVTINL----TFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYE 120
Query: 115 -----QPQTETVWFQSQKYKVPKMI-FVNKMDRIGANYNNCIIDIKK 155
+ QT ++ + ++I VNKMD Y+
Sbjct: 121 AGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIV 167
>d2bv3a3 d.14.1.1 (A:479-599) Elongation factor G (EF-G), domain IV
{Thermus thermophilus [TaxId: 274]}
Length = 121
Score = 138 bits (350), Expect = 4e-39
Identities = 64/122 (52%), Positives = 92/122 (75%), Gaps = 2/122 (1%)
Query: 467 PQVSYKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPK 526
PQV+Y+E+I K V EGK+I+Q+GG+GQYGHV I++EP L F F + I+GG IPK
Sbjct: 1 PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEP--LPRGSGFEFVNAIVGGVIPK 58
Query: 527 EFIPAIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKK 586
E+IPA++KGI + G ++G+PV+ IKV L +GS+H VDSSE AFK A ++A+K+A++K
Sbjct: 59 EYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQK 118
Query: 587 AN 588
+
Sbjct: 119 GD 120
>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2
{Escherichia coli [TaxId: 562]}
Length = 92
Score = 132 bits (333), Expect = 4e-37
Identities = 70/90 (77%), Positives = 82/90 (91%)
Query: 850 DKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLD 909
DKPFL+PIEDVFSISGRGTVVTG++ERGI+K GEE+EIVG K+T K+T TG+EMF+K LD
Sbjct: 3 DKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLD 62
Query: 910 EGLAGENVGILLRSVKREEVERGQVLAKIG 939
EG AGENVG+LLR +KREE+ERGQVLAK G
Sbjct: 63 EGRAGENVGVLLRGIKREEIERGQVLAKPG 92
>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2
{Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Length = 98
Score = 129 bits (327), Expect = 3e-36
Identities = 55/96 (57%), Positives = 76/96 (79%)
Query: 847 RITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKK 906
R +KPFL+P+E V+SI GRGTVVTG +ERGI+K G+E E +G+ + I+T +TGIEMF K
Sbjct: 2 RDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHK 61
Query: 907 TLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIK 942
+LD AG+N+G L+R +KRE++ RG V+AK GSI+
Sbjct: 62 SLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQ 97
>d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2
{Thermus thermophilus [TaxId: 274]}
Length = 100
Score = 125 bits (315), Expect = 1e-34
Identities = 69/99 (69%), Positives = 82/99 (82%), Gaps = 1/99 (1%)
Query: 845 PNRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYK-QTIKTTITGIEM 903
P R DKPFLMP+EDVF+I+GRGTV TG+IERG VK G+E+EIVG +T KT +TG+EM
Sbjct: 1 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEM 60
Query: 904 FKKTLDEGLAGENVGILLRSVKREEVERGQVLAKIGSIK 942
+KTL EG+AG+NVG+LLR V REEVERGQVLAK GSI
Sbjct: 61 HRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSIT 99
Score = 27.5 bits (61), Expect = 2.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 976 RTTDVTGICKLPENVEMVLPGDNIKLNVTLLSSIAIEIG 1014
R T VTG+ + ++ + GDN+ + + +S +E G
Sbjct: 51 RKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERG 89
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 120 bits (301), Expect = 2e-31
Identities = 62/207 (29%), Positives = 92/207 (44%), Gaps = 30/207 (14%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSH-------- 706
G +GHVDHGKTTL A+T + + + E++ TI E G+ S
Sbjct: 12 GVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEP 71
Query: 707 -------VEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCS-AVDGPMPQTREH 758
+ + + +D PGH + M++GAA MDGAILV + P PQTREH
Sbjct: 72 SCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREH 131
Query: 759 ILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLAL 818
+ +GV N+++ NK D V KE +I++ EN I+ SAL +
Sbjct: 132 FVALGIIGVKNLIIVQNKVDVV-SKEEALSQYRQIKQFTKGT--WAENVPIIPVSALHKI 188
Query: 819 EGKDDNQLGTTSIKKLLDVLDSSIPTP 845
I L++ ++ I TP
Sbjct: 189 N-----------IDSLIEGIEEYIKTP 204
Score = 81.5 bits (200), Expect = 5e-18
Identities = 43/194 (22%), Positives = 69/194 (35%), Gaps = 24/194 (12%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
NIG++ HVD GKTT + I S K E E G+ + +
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTS--KHSEELKRGMTIKLGYAETNIGVCESCKKPEAY 67
Query: 70 W-----------EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQT 118
+ KF I+ ID PGH + ++DGA++++ A+
Sbjct: 68 VTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQ 127
Query: 119 ETVWFQ--SQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKF-------NCIVLPIN--FN 167
F +I NK+D + K+F N ++P++
Sbjct: 128 TREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHK 187
Query: 168 IGIEENYEGIVDII 181
I I+ EGI + I
Sbjct: 188 INIDSLIEGIEEYI 201
>d2dy1a3 d.14.1.1 (A:455-569) Elongation factor G (EF-G), domain IV
{Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 115
Score = 116 bits (291), Expect = 3e-31
Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 5/118 (4%)
Query: 471 YKESIKKIVTQEGKYIKQSGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIP 530
Y+E+IKK+ +GKY KQ+GG GQYG V +R+E + F+ I GG IP ++
Sbjct: 2 YRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLE-----PASEYGFEWRITGGVIPSKYQE 56
Query: 531 AIEKGIMNQINYGVVLGYPVIKIKVFLVNGSFHSVDSSEYAFKNAAAIALKDALKKAN 588
AIE+GI GV+ G+PV+ K + NGS+H VDSS+ AF+ AA++A K + +A+
Sbjct: 57 AIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAH 114
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 119 bits (300), Expect = 4e-31
Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 22/211 (10%)
Query: 656 TIGHVDHGKTTLTAALTKVSSEIY-----------------GGEVRAFDTIDNAPEEKER 698
T G+VD GK+TL L S IY G +V +D E+E+
Sbjct: 14 TCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQ 73
Query: 699 GITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREH 758
GITI ++ + + + + D PGH Y +NM TGA+ D AI++ A G QTR H
Sbjct: 74 GITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH 133
Query: 759 ILLARQVGVPNIVVFLNKAD-CVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSAL-- 815
+A +G+ +IVV +NK D D+ + + ++ + + F V SAL
Sbjct: 134 SYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKG 193
Query: 816 LALEGKDDNQLGTTSIKKLLDVLDSSIPTPN 846
+ K + + + L+++L+ ++ +
Sbjct: 194 DNVVNKSER-SPWYAGQSLMEILE-TVEIAS 222
Score = 102 bits (255), Expect = 4e-25
Identities = 39/176 (22%), Positives = 62/176 (35%), Gaps = 19/176 (10%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGS---------------SHKIGEVHHGTTITDWMQQ 53
+VD GK+T R+L S S G+ + D +Q
Sbjct: 10 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQA 69
Query: 54 EQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG 113
E+E+GITI A + + K I DTPGH +T + D A+I++ A G
Sbjct: 70 EREQGITIDVA----YRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG 125
Query: 114 IQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIG 169
+Q QT + + + ++ + IK + I F
Sbjct: 126 VQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPT 181
>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 94
Score = 106 bits (266), Expect = 4e-28
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 850 DKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLD 909
DKP +P++DV+ I G GTV G++E G++K G + T + + +EM + L+
Sbjct: 1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTE--VKSVEMHHEQLE 58
Query: 910 EGLAGENVGILLRSVKREEVERGQVLAK 937
+G+ G+NVG +++V +E+ RG V
Sbjct: 59 QGVPGDNVGFNVKNVSVKEIRRGNVCGD 86
>d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and
4 {Methanococcus maripaludis [TaxId: 39152]}
Length = 92
Score = 106 bits (265), Expect = 5e-28
Identities = 34/94 (36%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Query: 847 RITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKK 906
R T+ F MP++ F I G GTVVTG I +GIVK G+E++++ + T + I+ FK+
Sbjct: 1 RNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMS--TKVRSIQYFKE 58
Query: 907 TLDEGLAGENVGILLRSVKREEVERGQVLAKIGS 940
++ E AG+ VG+ ++ V +++ RG +L +
Sbjct: 59 SVMEAKAGDRVGMAIQGVDAKQIYRGCILTSKDT 92
>d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 95
Score = 104 bits (261), Expect = 2e-27
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 849 TDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTL 908
DKP +PI+DV+SISG GTV G++E G++K G++I + IE +
Sbjct: 2 VDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVF--MPAGKVGEVRSIETHHTKM 59
Query: 909 DEGLAGENVGILLRSVKREEVERGQVLAKIGS 940
D+ G+N+G +R V++++++RG V+ +
Sbjct: 60 DKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNN 91
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 101 bits (253), Expect = 1e-24
Identities = 57/190 (30%), Positives = 89/190 (46%), Gaps = 31/190 (16%)
Query: 655 GTIGHVDHGKTTLTAALTKVS--------------SEIYGGEVRAFDTIDNA-PEEKERG 699
IGHVD GK+TL + ++ ++ G E ++ EE+E+G
Sbjct: 28 VFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKG 87
Query: 700 ITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMP------ 753
T+ +E+E++ ++ +D PGH Y+ NMI GA+Q D +LV SA G
Sbjct: 88 KTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERG 147
Query: 754 -QTREHILLARQVGVPNIVVFLNKADCVQD-------KELLDLVEMEIRELLTEYDFDGE 805
QTREH +LAR G+ ++VV +NK D KE +D + M +R +
Sbjct: 148 GQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY--NSKT 205
Query: 806 NTKIVIGSAL 815
+ K + SA
Sbjct: 206 DVKYMPVSAY 215
Score = 88.4 bits (218), Expect = 5e-20
Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 35/221 (15%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSG-------------SSHKIGEVHHGTTITDWMQQEQE 56
NI I HVDAGK+T ILF +G + E + + D +E+E
Sbjct: 26 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 85
Query: 57 RGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI-- 114
+G T+ +++D PGH + + D V++I A G
Sbjct: 86 KGKTVE----VGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 141
Query: 115 -----QPQTETVWFQSQKYKVPKMI-FVNKMDRIGANYNNCIID-IKKKFNCIVLPINFN 167
QT ++ + ++ +NKMD ++ K + + +
Sbjct: 142 AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 201
Query: 168 IGIEE---------NYEGIVDIINKKSFFWKENSIIIKNID 199
+ + + D ++ W + +++ +D
Sbjct: 202 NSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLD 242
>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos
taurus), mitochondrial [TaxId: 9913]}
Length = 103
Score = 95.4 bits (237), Expect = 4e-24
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 944 YNIFECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNV 1003
+ E +VYIL+KEEGGRH PF + + P + T D+ LP E+ +PG+++KL +
Sbjct: 1 HQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTL 60
Query: 1004 TLLSSIAIEIGLRFAIRE 1021
L + +E G RF +R+
Sbjct: 61 ILRQPMILEKGQRFTLRD 78
>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 121
Score = 95.5 bits (237), Expect = 7e-24
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 21/119 (17%)
Query: 845 PNRITDKPFLMPIEDVFSISG--------RGTVVTGKIERGIVKNGEEIEIVGYK----- 891
P R +KP M + F ++ G V+ G I +G +K G+EIEI
Sbjct: 1 PKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEH 60
Query: 892 -----QTIKTTITGIEMFKKTLDEGLAGENVGILLR---SVKREEVERGQVLAKIGSIK 942
+ I T I ++ + ++E G VG+ + + + ++ G V+ K G +
Sbjct: 61 GRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLP 119
>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release
factor ERF2, post-G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 95
Score = 93.7 bits (233), Expect = 1e-23
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 846 NRITDKPFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFK 905
R + PF+MPI + GT++ GKIE G +K + ++ QT++ T +
Sbjct: 3 ERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIY-DEAD 59
Query: 906 KTLDEGLAGENVGILLRSVKREEVERGQVLAKIGS 940
+ + + G+ V + +R +V+ G VL +
Sbjct: 60 EEISSSICGDQVRLRVRGDD-SDVQTGYVLTSTKN 93
Score = 30.2 bits (68), Expect = 0.29
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 318 RIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDINDAHFGDIVVIV--GLKES-ST 374
+I +G IK V ++ I ++I+ + GD V + G T
Sbjct: 28 KIEAGSIKKNSNVLVMPINQTLEVTAIYDEA---DEEISSSICGDQVRLRVRGDDSDVQT 84
Query: 375 GDTLCSLSENI 385
G L S +
Sbjct: 85 GYVLTSTKNPV 95
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 97.0 bits (240), Expect = 2e-23
Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 25/201 (12%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTID---------NAPEEKERGITISTS 705
G +GHVDHGKTTLT ALT V ++ + E+R TI P +
Sbjct: 9 GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCP 68
Query: 706 HVEYESEN-KHYAHVDCPGHADYIKNMITGA-AQMDGAILVCSAVDGPMPQTREHILLAR 763
+ +E+E + + +D PGH + M+ GA +++ + P PQTREH++ +
Sbjct: 69 YCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ 128
Query: 764 QVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDD 823
+G NI++ NK + V ++ L+ +I+E + EN I+ SAL
Sbjct: 129 IIGQKNIIIAQNKIELVDKEKALENYR-QIKEFIEGT--VAENAPIIPISAL-----HGA 180
Query: 824 NQLGTTSIKKLLDVLDSSIPT 844
N I L+ ++ IPT
Sbjct: 181 N------IDVLVKAIEDFIPT 195
Score = 74.6 bits (182), Expect = 1e-15
Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 15/187 (8%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGT----TITDWMQQEQERGITITSAS 65
NIG++ HVD GKTT T+ + +H T +++ G TS
Sbjct: 7 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPV 66
Query: 66 VSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIIC-ASSGIQPQTETVWFQ 124
+F ++ ID PGH + ++DGA+++I +PQT
Sbjct: 67 CPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA 126
Query: 125 SQKYKVPKM-IFVNKMDRIGANYNNCIIDIKKKF-------NCIVLPIN--FNIGIEENY 174
Q + I NK++ + K+F N ++PI+ I+
Sbjct: 127 LQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLV 186
Query: 175 EGIVDII 181
+ I D I
Sbjct: 187 KAIEDFI 193
>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Methanococcus jannaschii [TaxId:
2190]}
Length = 118
Score = 93.6 bits (232), Expect = 3e-23
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 21/117 (17%)
Query: 847 RITDKPFLMPIEDVFSISG--------RGTVVTGKIERGIVKNGEEIEIVGYKQT----- 893
R D M + F I+ +G V+ G I +G+ K G+EIEI +
Sbjct: 1 RDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNK 60
Query: 894 -----IKTTITGIEMFKKTLDEGLAGENVGILLR---SVKREEVERGQVLAKIGSIK 942
+ T I + L + G +G+ + + + G V+ G++
Sbjct: 61 TFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLP 117
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 94.4 bits (233), Expect = 3e-22
Identities = 46/226 (20%), Positives = 92/226 (40%), Gaps = 10/226 (4%)
Query: 9 RN--IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASV 66
R+ + ++ HVD GKTT + I + +S + G + T+ E
Sbjct: 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKF 63
Query: 67 SIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQ 126
SI + ++ DTPGH FT +R + D A++I+ + G +PQT+ +
Sbjct: 64 SIRETLPGLFFI----DTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILR 119
Query: 127 KYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINK--K 184
Y+ P ++ NK+DRI + + F+ + + + + YE + + + +
Sbjct: 120 MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL-DTKVYELVGKLHEEGFE 178
Query: 185 SFFWKENSIIIKNIDKDQLSAFDYYN-ELMLETLSNNDEFFLEKYI 229
S + + + +SA +L L + +L + +
Sbjct: 179 SERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQL 224
Score = 77.0 bits (188), Expect = 3e-16
Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 3/148 (2%)
Query: 649 LRSNTKGTIGHVDHGKTTLTAALTK--VSSEIYGGEVRAFDTIDNAPEEKERGITISTSH 706
+RS +GHVDHGKTTL + V+S GG + + + E
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKK 62
Query: 707 VEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVG 766
+D PGH + G A D AIL+ +G PQT+E + + R
Sbjct: 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYR 122
Query: 767 VPNIVVFLNKADCVQDKELLDLVEMEIR 794
VV NK D + + +
Sbjct: 123 T-PFVVAANKIDRIHGWRVHEGRPFMET 149
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus
thermophilus [TaxId: 274]}
Length = 75
Score = 88.3 bits (219), Expect = 5e-22
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 393 PIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVD 452
P PVI ++IEP K DQEKL L + +E P+ +S + TG TI+SGMGEL LEIIVD
Sbjct: 2 PEPVIDVAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVD 61
Query: 453 RILKENNIKTKISK 466
R+ +E + + K
Sbjct: 62 RLKREFKVDANVGK 75
>d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) {Thermus
thermophilus [TaxId: 274]}
Length = 93
Score = 86.9 bits (215), Expect = 3e-21
Identities = 51/75 (68%), Positives = 61/75 (81%)
Query: 947 FECEVYILSKEEGGRHTPFFNGYKPQFYFRTTDVTGICKLPENVEMVLPGDNIKLNVTLL 1006
FE VY+L KEEGGRHT FF+GY+PQFYFRTTDVTG+ +LP VEMV+PGDN+ V L+
Sbjct: 4 FEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELI 63
Query: 1007 SSIAIEIGLRFAIRE 1021
+A+E GLRFAIRE
Sbjct: 64 KPVALEEGLRFAIRE 78
>d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus
thermophilus [TaxId: 274]}
Length = 89
Score = 86.4 bits (214), Expect = 4e-21
Identities = 34/66 (51%), Positives = 49/66 (74%)
Query: 591 ILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLR 650
ILEPIM+VEV P E++G V+GD+N +RG I + N ++I +++PL E+FGY+TDLR
Sbjct: 2 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLR 61
Query: 651 SNTKGT 656
S T+G
Sbjct: 62 SKTQGR 67
>d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II
{Thermus thermophilus [TaxId: 274]}
Length = 121
Score = 85.9 bits (212), Expect = 2e-20
Identities = 44/95 (46%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Query: 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDIND 357
+L FKI DP++G L+FIR+YSG + G VYN+TK KE++ R+LRM AN ++++ +
Sbjct: 27 LAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEE 86
Query: 358 AHFGDIVVIVGLKESSTGDTLCSLSE-NIQLENIE 391
GD+ +VGLKE+ TGDTL + LE+IE
Sbjct: 87 LKAGDLGAVVGLKETITGDTLVGEDAPRVILESIE 121
>d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit,
domain II {Sulfolobus solfataricus [TaxId: 2287]}
Length = 114
Score = 82.3 bits (203), Expect = 2e-19
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 21/112 (18%)
Query: 847 RITDKPFLMPIEDVFSISG--------RGTVVTGKIERGIVKNGEEIEIVGYKQT----- 893
R + +M + F ++ +G V+ G I +G+ K +EI+++ +
Sbjct: 1 RDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGK 60
Query: 894 -----IKTTITGIEMFKKTLDEGLAGENVGILLR---SVKREEVERGQVLAK 937
I T I+ I + E G V I S+ + + G ++
Sbjct: 61 VSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITL 112
>d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 91
Score = 81.0 bits (200), Expect = 3e-19
Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 848 ITDKPFL-MPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKK 906
++ KP + +E+V +I G V+ G +E G++ G +++ + I IE ++
Sbjct: 4 LSKKPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKVKG----PSGIGGIVRIERNRE 58
Query: 907 TLDEGLAGENVGILLRSVKREEVERGQVLA 936
++ +AG+ +GI + K +V++G VL
Sbjct: 59 KVEFAIAGDRIGISIEG-KIGKVKKGDVLE 87
>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus
thermophilus, EF-G-2 [TaxId: 274]}
Length = 77
Score = 78.0 bits (192), Expect = 2e-18
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 393 PIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVD 452
P P + +++ P + D+ +L L+K +EDPSL L TGE +L G GELHL +
Sbjct: 2 PDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKE 61
Query: 453 RILKENNIKTKISKPQV 469
R L++ ++ + S P+V
Sbjct: 62 R-LQDYGVEVEFSVPKV 77
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 79
Score = 77.6 bits (191), Expect = 4e-18
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 392 TPIPVISISIEPIFKNDQEKLLNILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIV 451
+ PV+ +++E ND KL+ L++ K DP +L+ + +GE I++G GELHLEI +
Sbjct: 3 SVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPC-VLTYMSESGEHIVAGTGELHLEICL 61
Query: 452 DRILKE-NNIKTKISKP 467
+ + + KIS P
Sbjct: 62 QDLEHDHAGVPLKISPP 78
>d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II
{Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 103
Score = 78.2 bits (192), Expect = 5e-18
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 298 FVSLVFKIFHDPFLGSLSFIRIYSGFIKVGDLVYNSTKKVKEKIFRILRMFANSKKDIND 357
++ VFK+ DPF+G ++++R+Y G +K GD + + +V+ ++ +
Sbjct: 10 PLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQVRLPHL--YVPMGKDLLEVEE 67
Query: 358 AHFGDIVVIVGLKESSTGDTLCS 380
A G ++ + + G L
Sbjct: 68 AEAGFVLGVPKAEGLHRGMVLWQ 90
>d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus
thermophilus, EF-G-2 [TaxId: 274]}
Length = 96
Score = 75.0 bits (184), Expect = 5e-17
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 591 ILEPIMKVEVNLPSEFLGIVVGDINKKRGIINTIIDHENFKIINSYIPLRELFGYSTDLR 650
+LEPI +++V P E +G V+ D+ +RG I + ++++ +PL E+ Y L
Sbjct: 2 LLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAEVPLAEVLEYYKALP 61
Query: 651 SNTKGT 656
T G
Sbjct: 62 GLTGGA 67
>d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 92
Score = 72.7 bits (178), Expect = 3e-16
Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 852 PFLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEG 911
P++ V + G + GIV G+EI ++ ++ + + I F+ L++
Sbjct: 6 DLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKS--SRVKSIVTFEGELEQA 63
Query: 912 LAGENVGILLRSVKREEVERGQVLAKIGS 940
G+ V + + ++ RG +L +
Sbjct: 64 GPGQAVTLTME--DEIDISRGDLLVHADN 90
>d1n0ua3 d.14.1.1 (A:561-725) Elongation factor 2 (eEF-2), domain IV
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 165
Score = 70.1 bits (171), Expect = 2e-14
Identities = 16/162 (9%), Positives = 46/162 (28%), Gaps = 8/162 (4%)
Query: 429 SINNNTGETILSGMGELHLEIIVDRILKENNIKTKISKPQVSYKESIKKIVTQEGKYIKQ 488
++ + + +T LS H I + + + I ++ ++ K + +
Sbjct: 6 TVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFK----ARARIMAD 61
Query: 489 SGGKGQYGHVVIRIEPISLENKENFIFKSEIIGGSIPKEFIPAIEKGIMNQINYGVVLGY 548
G I + + + E ++ G + G
Sbjct: 62 DYGWDVTDARKIWCFGP--DGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGE 119
Query: 549 PVIKIKVFLVNGSFHSVDSSEYAFK--NAAAIALKDALKKAN 588
+ ++V +++ + H+ + A A+
Sbjct: 120 EMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLAD 161
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 138
Score = 68.2 bits (166), Expect = 4e-14
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 298 FVSLVFKIFHDPFLGSL-SFIRIYSGFIKVGDLVYNSTKK---------VKEKIFRILRM 347
+ V K+ G +F R+++G +K G V + I R++ M
Sbjct: 35 LMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLM 94
Query: 348 FANSKKDINDAHFGDIVVIVGLKES-STGDTLCSLSENIQLEN 389
+ I+D G+I+ +VG+ + TL + ++
Sbjct: 95 MGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKV 137
>d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 117
Score = 66.6 bits (162), Expect = 8e-14
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 593 EPIMKVEVNLPSEFLGIVVGDINKKRGII--NTIIDHENFKIINSYIPLRELFGYSTDLR 650
EP+ VE+ P + +G + +NKKRG + + +Y+P+ E FG++ +LR
Sbjct: 1 EPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELR 60
Query: 651 SNTKGT 656
T G
Sbjct: 61 QATGGQ 66
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 65.5 bits (158), Expect = 1e-12
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 23/191 (12%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
G GH+DHGKTTL+ LT+++S D PE ++RGITI ++ EN
Sbjct: 9 GIFGHIDHGKTTLSKVLTEIASTSA---------HDKLPESQKRGITIDIGFSAFKLENY 59
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
VD PGHAD I+ +++ A +D A++V A +GP QT EH+L+ +P ++ +
Sbjct: 60 RITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP--IIVV 117
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKL 834
E + EM ++ +L + +N+ I+ SA + +L
Sbjct: 118 ITKSDNAGTEEIKRTEMIMKSILQST-HNLKNSSIIPISAK-----TGFG------VDEL 165
Query: 835 LDVLDSSIPTP 845
+++ +++
Sbjct: 166 KNLIITTLNNA 176
Score = 63.2 bits (152), Expect = 7e-12
Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 25/183 (13%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+GI H+D GKTT ++ + + T+ D + + Q+RGITI F
Sbjct: 7 NLGIFGHIDHGKTTLSKVLTEIA-----------STSAHDKLPESQKRGITID----IGF 51
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
Y I ++D PGH D V + ++D A+I++ A G + QT +
Sbjct: 52 SAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFN 111
Query: 130 VPKMIFVNKMDRIGANYNNCIIDIKKKF--------NCIVLPIN--FNIGIEENYEGIVD 179
+P ++ + K D G I K N ++PI+ G++E I+
Sbjct: 112 IPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIIT 171
Query: 180 IIN 182
+N
Sbjct: 172 TLN 174
Score = 28.9 bits (63), Expect = 2.1
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 235 INDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSP 279
I SI + K I+ S+ G++ L N I L +
Sbjct: 132 TEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNA 176
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 65.8 bits (159), Expect = 2e-12
Identities = 29/217 (13%), Positives = 54/217 (24%), Gaps = 45/217 (20%)
Query: 657 IGHVDHGKTTLTAALTK--------------VSSEIYGGEV----RAFDTIDNAPEEK-- 696
+G GKTTLT + + E R F T++ E
Sbjct: 6 VGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYG 65
Query: 697 ------------ERGITISTSHVEYESENKHYAHVDCPGHADYIKNMITGAAQMDG---- 740
+ + + Y +D PG + G M+
Sbjct: 66 PNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYP 125
Query: 741 -AILVCSAVDGPMPQTREHILLAR-----QVGVPNIVVFLNKADCVQDKELLDLVEMEIR 794
+ + P + ++G I LNK D + ++E +
Sbjct: 126 LVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPA-LNKVDLLSEEEK--ERHRKYF 182
Query: 795 ELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSI 831
E + + + G + L +
Sbjct: 183 EDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRV 219
Score = 57.7 bits (138), Expect = 1e-09
Identities = 23/184 (12%), Positives = 53/184 (28%), Gaps = 36/184 (19%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEV--HHGTT---------ITDWMQQEQERGI 59
+ + +GKTT T Y ++K+ V G + +++ E+
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 60 TITSASVSIF---------------WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDG- 103
+ + + +IDTPG ++ + E +R+++
Sbjct: 63 GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL 122
Query: 104 ----AVIIICASSGIQPQTETVWF-----QSQKYKVPKMIFVNKMDRIGANYNNCIIDIK 154
V I +P + + +NK+D +
Sbjct: 123 PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYF 182
Query: 155 KKFN 158
+ +
Sbjct: 183 EDID 186
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 46.6 bits (109), Expect = 3e-06
Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 7/161 (4%)
Query: 655 GTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
+G + GK+TL A+ + + + + +++
Sbjct: 12 AIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSR 71
Query: 715 HYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFL 774
+ + I A D ++V A G Q + L + G ++VVF
Sbjct: 72 VEPRTVEKYSNYRVVDSIEKA---DVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFN 128
Query: 775 NKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSAL 815
V ++ D RE L D+ + ++ SA
Sbjct: 129 KWDLVVHREKRYDEFTKLFREKLYFIDY----SPLIFTSAD 165
Score = 40.8 bits (94), Expect = 3e-04
Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 9/146 (6%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
+ I+ + GK+T IL + GTT + G +F
Sbjct: 10 KVAIVGRPNVGKSTLFNAIL---NKERALVSPIPGTTRDPVDDEVFIDGRKY------VF 60
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
+ + + V S+ D VI++ A+ GI Q + + ++
Sbjct: 61 VDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRG 120
Query: 130 VPKMIFVNKMDRIGANYNNCIIDIKK 155
++ NK D + K
Sbjct: 121 RASVVVFNKWDLVVHREKRYDEFTKL 146
>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2
and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 128
Score = 44.4 bits (105), Expect = 6e-06
Identities = 10/84 (11%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 853 FLMPIEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGL 912
+ + VF S + ++ G+++ G + + + ++ + L
Sbjct: 7 IRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMNDDGETVGT--VESMQDKGENLKSAS 63
Query: 913 AGENVGILLRSV-KREEVERGQVL 935
G+ V + ++ + + G L
Sbjct: 64 RGQKVAMAIKDAVYGKTIHEGDTL 87
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 43.5 bits (101), Expect = 4e-05
Identities = 25/219 (11%), Positives = 63/219 (28%), Gaps = 49/219 (22%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFW 70
I I ++GKT+ + + + +
Sbjct: 6 IIIAGPQNSGKTSLLTLLT----------------------TDSVRPTVVSQEPLSAADY 43
Query: 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWF------- 123
+ + + + ++ + + G + ++ ++ + T T F
Sbjct: 44 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSI 103
Query: 124 --QSQKYKVPKMIFVNKMDRIGANYNNCIID--------IKKKFNCIVLPINFNIGIEEN 173
S + + +I NK + A + I D + ++ + + I E+
Sbjct: 104 TESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDY 163
Query: 174 YEGIVDIINKKSFF----------WKENSIIIKNIDKDQ 202
E +D++ F E SI + I + +
Sbjct: 164 AENTLDVLQSTDGFKFANLEASVVAFEGSINKRKISQWR 202
Score = 38.8 bits (89), Expect = 0.001
Identities = 20/186 (10%), Positives = 49/186 (26%), Gaps = 8/186 (4%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHY 716
G + GKT+L LT VR + + T Y
Sbjct: 9 AGPQNSGKTSLLTLLT-------TDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61
Query: 717 AHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNK 776
D + + + + + G+ I++ NK
Sbjct: 62 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNK 120
Query: 777 ADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTSIKKLLD 836
++ + + + E+ + ++ V ++ + ++
Sbjct: 121 SELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFA 180
Query: 837 VLDSSI 842
L++S+
Sbjct: 181 NLEASV 186
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 38.6 bits (88), Expect = 0.001
Identities = 23/176 (13%), Positives = 58/176 (32%), Gaps = 14/176 (7%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFW 70
+ I+ + GK+T +++ I E G T + +
Sbjct: 3 VLIVGRPNVGKSTLFNKLV---KKKKAIVEDEEGVTRDPVQDTVEWY---------GKTF 50
Query: 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV 130
++ + + +R D + ++ GI + E++ +K V
Sbjct: 51 KLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTV 110
Query: 131 PKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN--FNIGIEENYEGIVDIINKK 184
++ NK + + ++ +P++ NI ++ E I+ + +K
Sbjct: 111 DTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEK 166
Score = 31.3 bits (69), Expect = 0.32
Identities = 14/146 (9%), Positives = 43/146 (29%), Gaps = 4/146 (2%)
Query: 140 DRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNID 199
D G + ++ L + + +E +++ +D
Sbjct: 30 DEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVD 89
Query: 200 KDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSS 259
+ + + S D + N + + + ++ + + S+
Sbjct: 90 GKRGITKEDESLADFLRKSTVDTILVANKAEN---LREFEREVKPELYSLGFGEPIPVSA 146
Query: 260 LKNKGIEFLLNSICEYLPSPYDVDFK 285
N ++ +L +I + L +D +
Sbjct: 147 EHNINLDTMLETIIKKLEEK-GLDLE 171
Score = 28.6 bits (62), Expect = 2.7
Identities = 10/74 (13%), Positives = 15/74 (20%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHY 716
+G + GK+TL L K I E E +
Sbjct: 6 VGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDI 65
Query: 717 AHVDCPGHADYIKN 730
+
Sbjct: 66 ISQKMKEVTLNMIR 79
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 38.5 bits (88), Expect = 0.002
Identities = 26/196 (13%), Positives = 54/196 (27%), Gaps = 23/196 (11%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHY 716
+G D GKT L L G +I + + V N
Sbjct: 6 VGLCDSGKTLLFVRLLT------GQYRDTQTSI---------TDSSAIYKVNNNRGNSLT 50
Query: 717 AHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQV-------GVPN 769
+ + + + + V + L + + P+
Sbjct: 51 LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPS 110
Query: 770 IVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALE-GKDDNQLGT 828
+++ NK D K + + +EL T + S+ + GK +
Sbjct: 111 LLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEF 170
Query: 829 TSIKKLLDVLDSSIPT 844
+ + ++ L+ S
Sbjct: 171 SQLPLKVEFLECSAKG 186
Score = 32.3 bits (72), Expect = 0.18
Identities = 17/137 (12%), Positives = 36/137 (26%), Gaps = 13/137 (9%)
Query: 9 RNIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSI 68
R + + D+GKT R+L + + + S+
Sbjct: 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60
Query: 69 FWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKY 128
+ + V + +R ++ + + + S + K
Sbjct: 61 RF--QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDS-----------MALKN 107
Query: 129 KVPKMIFVNKMDRIGAN 145
+I NK D A
Sbjct: 108 SPSLLIACNKQDIAMAK 124
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 37.9 bits (87), Expect = 0.003
Identities = 21/149 (14%), Positives = 38/149 (25%), Gaps = 8/149 (5%)
Query: 60 TITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVI---IICASSGIQP 116
TI E++ + I DT G F R G +I + S
Sbjct: 38 TIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGV 97
Query: 117 QTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINF-----NIGIE 171
+ + V + K+ + +P + +E
Sbjct: 98 KMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVE 157
Query: 172 ENYEGIVDIINKKSFFWKENSIIIKNIDK 200
+ + + I + N K DK
Sbjct: 158 DAFLTMARQIKESMSQQNLNETTQKKEDK 186
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 37.1 bits (85), Expect = 0.004
Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 7/132 (5%)
Query: 60 TITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG-----I 114
TI ++N K + I DT G F R G +++ + I
Sbjct: 34 TIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNI 93
Query: 115 QPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN--FNIGIEE 172
+ +TV + ++ + + K+ + + + + E
Sbjct: 94 KQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNE 153
Query: 173 NYEGIVDIINKK 184
+ + +I +K
Sbjct: 154 IFFTLAKLIQEK 165
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 36.5 bits (83), Expect = 0.005
Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 21/178 (11%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
+ I+ + GK+T R+L I GTT ++ RG
Sbjct: 2 RMVIVGKPNVGKSTLLNRLL---NEDRAIVTDIPGTTRDVISEEIVIRG----------- 47
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYK 129
+T V+ +ER+L+ ++ A I++ P E ++ K
Sbjct: 48 ILFRIVDTAGVRSETNDLVERLG-IERTLQEIEKADIVLFVLDASSPLDEEDRKILERIK 106
Query: 130 VPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN--FNIGIEENYEGIVDIINKKS 185
+ + V + N I K + ++ I+ G+E+ + + I +++
Sbjct: 107 NKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEK----LEESIYRET 160
Score = 28.4 bits (62), Expect = 3.2
Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 21/140 (15%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHY 716
+G + GK+TL L D A G T E +
Sbjct: 6 VGKPNVGKSTLLNRLLNE---------------DRAIVTDIPGTTRDVISEEIVIRGILF 50
Query: 717 AHVDCPGHADYIKNMITGAAQM------DGAILVCSAVDGPMPQTREHILLARQVGVPNI 770
VD G +++ + A +V +D P E + ++
Sbjct: 51 RIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRY 110
Query: 771 VVFLNKADCVQDKELLDLVE 790
+V +NK D V+ ++
Sbjct: 111 LVVINKVDVVEKINEEEIKN 130
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 37.0 bits (84), Expect = 0.006
Identities = 34/193 (17%), Positives = 60/193 (31%), Gaps = 22/193 (11%)
Query: 657 IGHVDHGKTTLTAALT--KVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENK 714
G + GK+TL LT KV G R I+ + + +
Sbjct: 6 AGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQE 65
Query: 715 HYAHVDCPGHADYIKNM----ITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNI 770
D KN+ + + I+ G +P E R++ +P I
Sbjct: 66 RIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTI 125
Query: 771 VVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTTS 830
V NK D +++ + + + E + + SA DN
Sbjct: 126 VAV-NKLDKIKNVQEV----INFLAEKFEVPLSEIDKVFIPISAK-----FGDN------ 169
Query: 831 IKKLLDVLDSSIP 843
I++L + + I
Sbjct: 170 IERLKNRIFEVIR 182
Score = 34.3 bits (77), Expect = 0.035
Identities = 33/187 (17%), Positives = 65/187 (34%), Gaps = 18/187 (9%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFW 70
I + GK+T R+ G + G+ G T + + I +
Sbjct: 3 IIFAGRSNVGKSTLIYRLT---GKKVRRGK-RPGVTRKIIEIEWKNHKIIDMPGFGFMMG 58
Query: 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGA----VIIICASSGIQPQTETVWFQSQ 126
+ + I D ++ ++ V+DG +I G P + +
Sbjct: 59 LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR 118
Query: 127 KYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNI---------GIEENYEGI 177
+ +P ++ VNK+D+I N I + +KF + I+ IE I
Sbjct: 119 ELDIPTIVAVNKLDKI-KNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRI 177
Query: 178 VDIINKK 184
++I ++
Sbjct: 178 FEVIRER 184
Score = 28.1 bits (61), Expect = 3.9
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 247 LKNKIIPIMCGSSLKNKGIEFLLNSICEYLP 277
+ IPI S+ IE L N I E +
Sbjct: 155 IDKVFIPI---SAKFGDNIERLKNRIFEVIR 182
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 36.7 bits (84), Expect = 0.006
Identities = 17/134 (12%), Positives = 36/134 (26%), Gaps = 8/134 (5%)
Query: 59 ITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICAS---SGIQ 115
TI E++ + + I DT G F R G +++ + S
Sbjct: 37 STIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 96
Query: 116 PQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINF-----NIGI 170
+ + + + + + +K + NI +
Sbjct: 97 IRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINV 156
Query: 171 EENYEGIVDIINKK 184
E + + I K
Sbjct: 157 ENAFFTLARDIKAK 170
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 36.3 bits (83), Expect = 0.016
Identities = 14/150 (9%), Positives = 35/150 (23%), Gaps = 21/150 (14%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
N+ + +GK++ + + +
Sbjct: 58 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER-----------------HP 100
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVERSLR---VLDGAVIIICASSGIQPQTETVWFQSQ 126
++ ++ D PG + L + II +++ + +
Sbjct: 101 YKHPNIPNVV-FWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAIS 159
Query: 127 KYKVPKMIFVNKMDRIGANYNNCIIDIKKK 156
K K+D N + K
Sbjct: 160 MMKKEFYFVRTKVDSDITNEADGEPQTFDK 189
Score = 35.1 bits (80), Expect = 0.044
Identities = 15/146 (10%), Positives = 30/146 (20%), Gaps = 16/146 (10%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHY 716
G GK++ L + +E G H +
Sbjct: 62 TGETGSGKSSFINTLRGIGNEEEGAAKTGVVE------------VTMERHPYKHPNIPNV 109
Query: 717 AHVDCPG---HADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVF 773
D PG + + + + + + V
Sbjct: 110 VFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVR 169
Query: 774 LNKADCVQDKELLDLVEMEIRELLTE 799
K D E + +E + +
Sbjct: 170 -TKVDSDITNEADGEPQTFDKEKVLQ 194
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 34.9 bits (79), Expect = 0.020
Identities = 28/185 (15%), Positives = 51/185 (27%), Gaps = 34/185 (18%)
Query: 11 IGIIAHVDAGKTTTTERIL---FYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVS 67
I II + GKT+ R F +G TI +
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDK--------------- 52
Query: 68 IFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK 127
+ + I DT G + R G +++ ++ W K
Sbjct: 53 --------RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK 104
Query: 128 YKVPKMIFVN------KMDRIGANYNNCIIDIKKKFNCIVLPIN--FNIGIEENYEGIVD 179
V M+ + + + NI +++ +E +VD
Sbjct: 105 TYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD 164
Query: 180 IINKK 184
+I +K
Sbjct: 165 VICEK 169
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 34.1 bits (77), Expect = 0.039
Identities = 18/137 (13%), Positives = 40/137 (29%), Gaps = 8/137 (5%)
Query: 61 ITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTET 120
I V+ K + I DT G F R G +++ +
Sbjct: 40 IGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLD 99
Query: 121 VWFQSQKYKVPKM------IFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN--FNIGIEE 172
W + + + N + +K + + + + G++
Sbjct: 100 NWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQC 159
Query: 173 NYEGIVDIINKKSFFWK 189
+E +V+ I + W+
Sbjct: 160 AFEELVEKIIQTPGLWE 176
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 34.2 bits (77), Expect = 0.041
Identities = 24/189 (12%), Positives = 61/189 (32%), Gaps = 35/189 (18%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
++G++ + +AGK++ + + + KI T ++
Sbjct: 3 DVGLVGYPNAGKSSLLAAM---TRAHPKIAPYPFTTLSP------------------NLG 41
Query: 70 WEVNKFKYMINIIDTPGHVDFTIEVE----RSLRVLDGAVIIICASSGIQPQT------- 118
+ + D PG ++ E + LR + +++
Sbjct: 42 VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLR 101
Query: 119 -ETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINF--NIGIEENYE 175
E + + P ++ +NK+D + + D + VLP++ G+ E
Sbjct: 102 KEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKE 161
Query: 176 GIVDIINKK 184
+ ++
Sbjct: 162 ALHALVRST 170
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 33.4 bits (75), Expect = 0.081
Identities = 20/126 (15%), Positives = 35/126 (27%), Gaps = 8/126 (6%)
Query: 67 SIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQ 126
S V + I DT G F R GA+++ +S T W
Sbjct: 44 SKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA 103
Query: 127 KYKVPKMIFV------NKMDRIGANYNNCIIDIKKKFNCIVLPIN--FNIGIEENYEGIV 178
+ + I + +D ++ + L + +EE +
Sbjct: 104 RMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA 163
Query: 179 DIINKK 184
I K
Sbjct: 164 RKILNK 169
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 32.8 bits (73), Expect = 0.11
Identities = 30/207 (14%), Positives = 56/207 (27%), Gaps = 33/207 (15%)
Query: 650 RSNTKGTIGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEY 709
S +G + GK+TL L G +V ++ RGI
Sbjct: 4 YSGFVAIVGKPNVGKSTLLNNLL-------GVKVAPISPRPQTTRKRLRGILTEGRRQIV 56
Query: 710 ESENKHYAHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPN 769
+ + + A ++ + V P P+
Sbjct: 57 FVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVA--------RA 108
Query: 770 IVVFLNKADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSALLALEGKDDNQLGTT 829
+ + K + LD + E + Y + + SAL +
Sbjct: 109 LKPLVGKVPILLVGNKLDAAKYP-EEAMKAYHELLPEAEPRMLSAL-----DERQ----- 157
Query: 830 SIKKLLDVLDSSIPTPNRITDKPFLMP 856
+ +L L + +P + PF P
Sbjct: 158 -VAELKADLLALMP------EGPFFYP 177
Score = 32.0 bits (71), Expect = 0.23
Identities = 22/184 (11%), Positives = 44/184 (23%), Gaps = 17/184 (9%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFW 70
+ I+ + GK+T +L G TT E I
Sbjct: 8 VAIVGKPNVGKSTLLNNLL---GVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLH 64
Query: 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV 130
+ + + V ++ P+ E V +
Sbjct: 65 KPMDALGEFMDQEVYEALADVNAVV----------WVVDLRHPPTPEDELVARALKPLVG 114
Query: 131 PKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINF----NIGIEENYEGIVDIINKKSF 186
I + A Y + + P + E ++ ++ + F
Sbjct: 115 KVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPF 174
Query: 187 FWKE 190
F+ E
Sbjct: 175 FYPE 178
Score = 29.7 bits (65), Expect = 1.3
Identities = 5/50 (10%), Positives = 15/50 (30%)
Query: 228 YINNNYSINDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLP 277
N + + +++ S+L + + L + +P
Sbjct: 121 VGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP 170
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 32.8 bits (73), Expect = 0.11
Identities = 17/159 (10%), Positives = 42/159 (26%), Gaps = 9/159 (5%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHY 716
G + GK++ LT S + + N E + + Y
Sbjct: 22 AGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY----AEV 77
Query: 717 AHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNK 776
+ + + G +++ ++ I A + +V+
Sbjct: 78 PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL--T 135
Query: 777 ADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSAL 815
+RE + + + ++ S+L
Sbjct: 136 KADKLASGARKAQLNMVREAVLAF---NGDVQVETFSSL 171
Score = 29.8 bits (65), Expect = 1.2
Identities = 14/141 (9%), Positives = 45/141 (31%), Gaps = 4/141 (2%)
Query: 140 DRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNID 199
G + ++ + LP + E + + +++ + +
Sbjct: 47 KTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLM 106
Query: 200 KDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSI----RKLVLKNKIIPIM 255
+ D +++ + +N + + + K + ++ N + +
Sbjct: 107 DIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE 166
Query: 256 CGSSLKNKGIEFLLNSICEYL 276
SSLK +G++ L + +
Sbjct: 167 TFSSLKKQGVDKLRQKLDTWF 187
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 32.8 bits (73), Expect = 0.12
Identities = 19/180 (10%), Positives = 52/180 (28%), Gaps = 17/180 (9%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFW 70
I + + GK++ ++ + + T ++ E
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLA-RTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84
Query: 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV 130
++ + +I+T ++ I+ ++ + Y +
Sbjct: 85 SKSEREAWGRMIETYITTREELKAVV---------QIVDLRHAPSNDDVQMYEFLKYYGI 135
Query: 131 PKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINF-------NIGIEENYEGIVDIINK 183
P ++ K D+I + + ++ I G +E + I +IN+
Sbjct: 136 PVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMINR 195
Score = 30.1 bits (66), Expect = 0.91
Identities = 19/159 (11%), Positives = 49/159 (30%), Gaps = 10/159 (6%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHY 716
G + GK++ +L + N + + +
Sbjct: 29 AGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGF----AKV 84
Query: 717 AHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNK 776
+ + I+ IT ++ + + P + + G+P ++V K
Sbjct: 85 SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIP-VIVIATK 143
Query: 777 ADCVQDKELLDLVEMEIRELLTEYDFDGENTKIVIGSAL 815
AD + + + +R+ L D ++++ S+
Sbjct: 144 ADKIPKGKWDKHAK-VVRQTLNIDPED----ELILFSSE 177
Score = 29.7 bits (65), Expect = 1.2
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 235 INDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYL 276
+ +R+ + + ++ SS KG + +I + +
Sbjct: 152 WDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 32.2 bits (72), Expect = 0.16
Identities = 11/138 (7%), Positives = 40/138 (28%), Gaps = 8/138 (5%)
Query: 54 EQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSG 113
T+ + +V+ K + + DT G F R +++ ++
Sbjct: 33 AGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNK 92
Query: 114 IQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIID------IKKKFNCIVLPIN-- 165
W + + + + + ++ + K++ + +
Sbjct: 93 ASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAK 152
Query: 166 FNIGIEENYEGIVDIINK 183
+ ++ + I + +
Sbjct: 153 TGLNVDLAFTAIAKELKR 170
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 32.0 bits (71), Expect = 0.24
Identities = 26/185 (14%), Positives = 57/185 (30%), Gaps = 18/185 (9%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFW 70
I I+ + GK+T ++L G I TT + E +
Sbjct: 8 IAIVGRPNVGKSTLLNKLL---GQKISITSRKAQTTRHRIVGIHTEG----------AYQ 54
Query: 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV 130
+ +++ + + S VI + + P E V + ++ K
Sbjct: 55 AIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKA 114
Query: 131 PKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINF-----NIGIEENYEGIVDIINKKS 185
P ++ VNK+D + + L I + ++ + + + +
Sbjct: 115 PVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEAT 174
Query: 186 FFWKE 190
+ E
Sbjct: 175 HHFPE 179
Score = 30.5 bits (67), Expect = 0.71
Identities = 16/138 (11%), Positives = 45/138 (32%)
Query: 140 DRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSIIIKNID 199
R + I+ I + + ++ E I ++NK + + ++ +
Sbjct: 34 SRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVV 93
Query: 200 KDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKNSIRKLVLKNKIIPIMCGSS 259
+ D L ++N D+ ++ L + + I+ S+
Sbjct: 94 EGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISA 153
Query: 260 LKNKGIEFLLNSICEYLP 277
++ + + ++LP
Sbjct: 154 ETGLNVDTIAAIVRKHLP 171
Score = 28.5 bits (62), Expect = 3.3
Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 8/146 (5%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHY 716
+G + GK+TL L I + + + I +
Sbjct: 11 VGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTP------GLH 64
Query: 717 AHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGPMPQTREHILLARQVGVPNIVVFLNK 776
+ K + ++ I V E +L + G +++ +NK
Sbjct: 65 MEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDD--EMVLNKLREGKAPVILAVNK 122
Query: 777 ADCVQDKELLDLVEMEIRELLTEYDF 802
D VQ+K L + + D
Sbjct: 123 VDNVQEKADLLPHLQFLASQMNFLDI 148
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 31.3 bits (70), Expect = 0.29
Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 8/123 (6%)
Query: 71 EVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGI----QPQTETVWFQSQ 126
E+N K + I DT G F + R + ++ + P+ Q
Sbjct: 48 EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA 107
Query: 127 KYKVPKMIFVNKMDRIGANYN--NCIIDIKKKFNCIVLPIN--FNIGIEENYEGIVDIIN 182
KV ++ NK+D + + + L + + +E+ + + +
Sbjct: 108 SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 167
Query: 183 KKS 185
++
Sbjct: 168 SEA 170
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 31.4 bits (70), Expect = 0.36
Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 17/189 (8%)
Query: 10 NIGIIAHVDAGKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIF 69
++G++ GK+T + S + KI + H T + + E + G + A +
Sbjct: 3 DVGLVGFPSVGKSTLLSVV---SSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGL 59
Query: 70 WE-----VNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQ 124
E V + I+ + I++ G + E +
Sbjct: 60 IEGAHQGVGLGHQFLRHIERTRVIVHVIDM-------SGLEGRDPYDDYLTINQELSEYN 112
Query: 125 SQKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPIN--FNIGIEENYEGIVDIIN 182
+ + P++I NKMD A N K + V PI+ G+ E + + +
Sbjct: 113 LRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE 172
Query: 183 KKSFFWKEN 191
F +
Sbjct: 173 NTPEFPLYD 181
Score = 28.0 bits (61), Expect = 4.7
Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 236 NDIKNSIRKLVLKNKIIPIMCGSSLKNKGIEFLLNSICEYLPSPYDVDFKNND 288
+++ KL + PI S++ +G+ LL + L + + + +
Sbjct: 134 ENLEAFKEKLTDDYPVFPI---SAVTREGLRELLFEVANQLENTPEFPLYDEE 183
>d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 99
Score = 28.9 bits (65), Expect = 0.83
Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 857 IEDVFSISGRGTVVTGKIERGIVKNGEEIEIVGYKQTIKT-TITGIEMFKKTLDEGLAGE 915
+ F +S GT+ + G + ++ ++ + I ++ +K + E G
Sbjct: 11 VRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGY 70
Query: 916 NVGILL 921
G+ +
Sbjct: 71 ECGLTI 76
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 27.7 bits (61), Expect = 1.6
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 108 ICASSGIQPQTETVWFQSQKYKVPK 132
CA +G++ Q +W + K P
Sbjct: 54 FCAETGVRRQVLKIWMHNNKNSGPS 78
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 29.7 bits (66), Expect = 1.8
Identities = 11/132 (8%), Positives = 45/132 (34%), Gaps = 19/132 (14%)
Query: 126 QKYKVPKMIFVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDII---- 181
+ + + I A + ++++ + + + + N + IV +
Sbjct: 350 SSEFSHEAVKTHIETVINALKTERDVSVRQR----AVDLLYAMCDRSNAQQIVAEMLSYL 405
Query: 182 NKKSFFWKENSII-IKNIDKDQLSAFDYYNELMLETLSNNDEFFLEKYINNNYSINDIKN 240
+ +E ++ + + + + +Y + +L + I +Y ++
Sbjct: 406 ETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIR----------IAGDYVSEEVWY 455
Query: 241 SIRKLVLKNKII 252
+ ++V+ +
Sbjct: 456 RVIQIVINRDDV 467
>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 28.3 bits (62), Expect = 2.7
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 687 DTIDNAPEEKERGITISTS--HVEYESENKHYAHVDCPGHADYIKNMITGAAQMDGAILV 744
DT+ P E I+ + + + + E N+ +DC Y + I A + ++
Sbjct: 3 DTLRPVPFASEMAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIM 62
Query: 745 CSAVDGPMPQTREHI 759
+ R
Sbjct: 63 LRRLQKGNLPVRALF 77
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 28.7 bits (63), Expect = 2.7
Identities = 24/130 (18%), Positives = 41/130 (31%), Gaps = 17/130 (13%)
Query: 657 IGHVDHGKTTLTAALTKVSSEIYGGEVRAFDTIDNAPEEKERGITISTSHVEYESENKHY 716
IG GK+ L + T+ F+ + G+ +T ++ + +
Sbjct: 10 IGDSGVGKSNLLSRFTR----------NEFNLE----SKSTIGVEFATRSIQVDGKTIKA 55
Query: 717 AHVDCPGHADYIKNMITGAAQMDGAILVCSAVDGP-MPQTREHILLARQVGVPNIVVFL- 774
D G Y + GA+LV + R NIV+ L
Sbjct: 56 QIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 115
Query: 775 -NKADCVQDK 783
NK+D +
Sbjct: 116 GNKSDLRHLR 125
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 28.3 bits (62), Expect = 4.7
Identities = 24/159 (15%), Positives = 44/159 (27%), Gaps = 31/159 (19%)
Query: 11 IGIIAHVDAGKTTTTERILFYSGSSHK---IGEVHHGTTITDWMQQEQERGITITSASVS 67
+GI GK+TT + + ++ + V +T T + + + +
Sbjct: 54 VGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN 113
Query: 68 IFWEVNKFKYMINIIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQK 127
F + + G T E VI++ + Q+ET
Sbjct: 114 AF-----IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILV--ETVGVGQSETAVADLTD 166
Query: 128 YKV---------------------PKMIFVNKMDRIGAN 145
+ + MI VNK D
Sbjct: 167 FFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGE 205
Score = 27.9 bits (61), Expect = 6.0
Identities = 23/191 (12%), Positives = 45/191 (23%), Gaps = 30/191 (15%)
Query: 650 RSNTKGTIGHVDHGKTTLTAALTKVSSE------IYGGEVRAFDTIDNAPEEKERGITIS 703
R+ G G GK+T AL + + + + + T + +K R ++
Sbjct: 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLA 109
Query: 704 TSH--VEYESENKHYAHVDCPGHADYIK----------------NMITGAAQMDGAI--L 743
S + + + + A D L
Sbjct: 110 IDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFL 169
Query: 744 VCSAVDGPMPQTREHILLARQVGVPNIVVFLNKADCVQDKELLDLVEMEIRELLTEYDFD 803
V + ++ +NKAD + E R L
Sbjct: 170 VLMLPGAGDELQGIKKGIFELAD----MIAVNKADDGDGERRASAAASEYRAALHILTPP 225
Query: 804 GENTKIVIGSA 814
+ +
Sbjct: 226 SATWTPPVVTI 236
>d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2
and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 101
Score = 26.6 bits (59), Expect = 4.9
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 865 GRGTVVTGKIERGIVKNGEEIEIVGYKQTIKTTITGIEMFKKTLDEGLAGENVGILLRSV 924
G G + I GI++ + I ++ K I T I + + L+E + V
Sbjct: 17 GLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRP-LEEMRESRKKFQKVDEV 75
Query: 925 K 925
Sbjct: 76 V 76
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 28.1 bits (61), Expect = 5.0
Identities = 13/149 (8%), Positives = 40/149 (26%), Gaps = 1/149 (0%)
Query: 36 HKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMINIIDTPGHVDFTIEVE 95
+ + G ++ ++ ++ A+ E + D
Sbjct: 74 GNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT 133
Query: 96 RSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMIFVNKMDRIGANYNNCIIDIKK 155
+ + +S + + + +R + N + +
Sbjct: 134 VVFPDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVP 193
Query: 156 KFNCIVLPINFNIGIEENYEGIVDIINKK 184
+ +VL + + IE+ E + +K
Sbjct: 194 AADALVL-DSTTLSIEQVIEKALQYARQK 221
>d1in0a1 d.58.49.1 (A:2-89) Hypothetical protein HI1034 {Haemophilus
influenzae [TaxId: 727]}
Length = 88
Score = 26.6 bits (59), Expect = 5.0
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 784 ELLDLVEMEIRELLTEYDFDGENTKIVI--GSALLALEGKDDNQLGTTSIKKLLDVL 838
E+ + VE R L T YDF G I + + + + + D QL ++L+++L
Sbjct: 13 EVRNAVENANRVLSTRYDFRGVEAVIELNEKNETIKITTESDFQL-----EQLIEIL 64
>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 27.8 bits (61), Expect = 7.0
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 414 NILQKFCKEDPSLLLSINNNTGETILSGMGELHLEIIVDRILKENNI 460
++L + K LL + + GMG L + + R L N+
Sbjct: 96 SLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNL 142
>d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase
{Thermotoga maritima [TaxId: 2336]}
Length = 296
Score = 27.3 bits (59), Expect = 9.4
Identities = 22/203 (10%), Positives = 56/203 (27%), Gaps = 6/203 (2%)
Query: 20 GKTTTTERILFYSGSSHKIGEVHHGTTITDWMQQEQERGITITSASVSIFWEVNKFKYMI 79
GK + + S ++ ++ + ++ + I+ V +E +
Sbjct: 53 GKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNE 112
Query: 80 NIID-----TPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKVPKMI 134
+ + V + ++ G T V+
Sbjct: 113 LDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNVVFPLCSTIVTVDRD 172
Query: 135 FVNKMDRIGANYNNCIIDIKKKFNCIVLPINFNIGIEENYEGIVDIINKKSFFWKENSII 194
+ I K+ +V ++ + ++ K+ S+
Sbjct: 173 HEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVMEDVARKKSSRMYVIDKDFSVK 232
Query: 195 IKNIDKDQLSAFDYYNELMLETL 217
+K++ + + FDY E E L
Sbjct: 233 VKSLKLHE-NRFDYCGENTFEDL 254
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 26.8 bits (58), Expect = 9.8
Identities = 16/177 (9%), Positives = 44/177 (24%), Gaps = 11/177 (6%)
Query: 19 AGKTTTTERILFYSGSSHK------IGEVHHGTTITDWMQQEQERGITITSASVSIFWEV 72
AGK T ++ H V G+ + ++ + G ++ V E
Sbjct: 14 AGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEK 73
Query: 73 NKFKYMIN--IIDTPGHVDFTIEVERSLRVLDGAVIIICASSGIQPQTETVWFQSQKYKV 130
N + + + + + + +
Sbjct: 74 NLETPPCKNGFLLDGFPRTVRQAEMLDDLMEK-RKEKLDSVIEFSIPDSLLIRRITGRLI 132
Query: 131 PKMIFVNKMDRIGANYNNCIIDIKKKF--NCIVLPINFNIGIEENYEGIVDIINKKS 185
+ Y+ + + + I I+ + + + I+ +K +
Sbjct: 133 HSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKAT 189
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.138 0.392
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,915,100
Number of extensions: 203149
Number of successful extensions: 882
Number of sequences better than 10.0: 1
Number of HSP's gapped: 805
Number of HSP's successfully gapped: 151
Length of query: 1021
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 927
Effective length of database: 1,116,976
Effective search space: 1035436752
Effective search space used: 1035436752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.8 bits)