BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5022
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 227 bits (579), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 117/203 (57%), Positives = 150/203 (73%), Gaps = 10/203 (4%)
Query: 64 EGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQE 123
EG+ Q TEVDLFIST++I VLN D +E MMDHALRTISYIADIG++VVLMARRR
Sbjct: 59 EGDAQTLTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSA 118
Query: 124 ADEPPKISRTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGIEDHSFVKEMDYQE 183
+ KMICHVFES++AQ IAQSIGQAF VAY EFL+ANGI ++ +Y +
Sbjct: 119 G------KKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQK-EYSD 171
Query: 184 VLNSQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGA 243
++N+QE++ D+L F+ E KE+ + K KGEILGVV+VES S+LPTV++AN+ G
Sbjct: 172 IINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVES---SILPTVILANMMNGGP 228
Query: 244 AARCGQLNIGDQIIAVNGVSLVA 266
AAR G+L+IGDQI+++NG SLV
Sbjct: 229 AARSGKLSIGDQIMSINGTSLVG 251
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 27/107 (25%)
Query: 265 VAYMEFLKANGIEDHSFVKEMDYQEVLNSQEIFGDELQMFAK----KELQKE-------- 312
VAY EFL+ANGI ++ +Y +++N+QE++ D+L F+ KELQ E
Sbjct: 148 VAYQEFLRANGINPEDLSQK-EYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILG 206
Query: 313 -------------ICSLLRGGIAERGG-VRVGHRIIEINNQSVVAVP 345
+ +++ GG A R G + +G +I+ IN S+V +P
Sbjct: 207 VVVVESSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLP 253
>pdb|4DBB|A Chain A, The Ptb Domain Of Mint1 Is Autoinhibited By A Helix In The
C-Terminal Linker Region
Length = 162
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 115/178 (64%), Gaps = 19/178 (10%)
Query: 16 PEDPVVDTGLGPGTLFRLKFLGSVQV--DEDDPXXXXXXXXXXMVEEAAPEGETQPSTEV 73
PED ++D G +F +LGS Q+ D+ V PEGE+QP TEV
Sbjct: 2 PED-LID-----GIIFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKPEGESQPMTEV 55
Query: 74 DLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRT 133
DLFIST++I VLN D +E MMDH LRTISYIADIG++VVLMARRR +
Sbjct: 56 DLFISTQRIKVLNADTQEPMMDHPLRTISYIADIGNIVVLMARRRMPRSQY--------- 106
Query: 134 PKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGIEDHSFVKEMDYQEVLNSQEIF 191
KMICHVFES++AQ IAQSIGQAF VAY EFL+ANGI ++ +Y ++LN+Q+++
Sbjct: 107 -KMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQK-EYSDLLNTQDMY 162
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 265 VAYMEFLKANGIEDHSFVKEMDYQEVLNSQEIF 297
VAY EFL+ANGI ++ +Y ++LN+Q+++
Sbjct: 131 VAYQEFLRANGINPEDLSQK-EYSDLLNTQDMY 162
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 110/163 (67%), Gaps = 11/163 (6%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
K+V + K KGEILGVVIVESGWGS+LPTV+IAN+ G A + G+LNIGDQI+++NG SL
Sbjct: 3 KDVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSL 62
Query: 265 V--------AYMEFLKANGIEDHSFVKEMDYQEVLNSQEIFGDELQMFAKKELQKEICSL 316
V + ++ LK + V+ VL + +L + + ICSL
Sbjct: 63 VGLPLSTCQSIIKGLKNQSRVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGI---ICSL 119
Query: 317 LRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
+RGGIAERGGVRVGHRIIEIN QSVVA PHEKIV++L+ +VGE
Sbjct: 120 MRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGE 162
>pdb|3SV1|A Chain A, Crystal Structure Of App Peptide Bound Rat Mint2 Parm
pdb|3SV1|B Chain B, Crystal Structure Of App Peptide Bound Rat Mint2 Parm
pdb|3SV1|C Chain C, Crystal Structure Of App Peptide Bound Rat Mint2 Parm
Length = 190
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 79/135 (58%), Positives = 97/135 (71%), Gaps = 12/135 (8%)
Query: 64 EGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQE 123
EG+ Q TEVDLFIST++I VLN D +E MMDHALRTISYIADIG++VVLMARRR
Sbjct: 59 EGDAQTLTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSA 118
Query: 124 ADEPPKISRTP---------KMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGIEDHS 174
+ + I TP KMICHVFES++AQ IAQSIGQAF VAY EFL+ANGI
Sbjct: 119 SQDC--IETTPGAQEGKKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGINPED 176
Query: 175 FVKEMDYQEVLNSQE 189
++ +Y +++N+QE
Sbjct: 177 LSQK-EYSDIINTQE 190
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 265 VAYMEFLKANGIEDHSFVKEMDYQEVLNSQE 295
VAY EFL+ANGI ++ +Y +++N+QE
Sbjct: 161 VAYQEFLRANGINPEDLSQK-EYSDIINTQE 190
>pdb|1AQC|A Chain A, X11 Ptb Domain-10mer Peptide Complex
pdb|1AQC|B Chain B, X11 Ptb Domain-10mer Peptide Complex
pdb|1X11|A Chain A, X11 Ptb Domain
pdb|1X11|B Chain B, X11 Ptb Domain
Length = 172
Score = 144 bits (363), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 73/116 (62%), Positives = 84/116 (72%), Gaps = 7/116 (6%)
Query: 62 APEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVS 121
APEGE+QP TEVDLFI T++I VLN D +E DH LRTISYIADIG++VVL ARRR
Sbjct: 55 APEGESQPXTEVDLFILTQRIKVLNADTQETXXDHPLRTISYIADIGNIVVLXARRRIPR 114
Query: 122 QEADEPPKIS-------RTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGI 170
+ E + S R K ICHVFES++AQ IAQSIGQAF VAY EFL+ANGI
Sbjct: 115 SNSQENVEASHPSQDGKRQYKXICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGI 170
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 51/63 (80%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
K+V + K KGEILGVVIVESGWGS+LPTV+IAN+ G A + G+LNIGDQI+++NG SL
Sbjct: 3 KDVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSL 62
Query: 265 VAY 267
V
Sbjct: 63 VGL 65
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid Beta
A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 85.9 bits (211), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 206 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
+V + K KGEILGVVIVESGWGS+LPTV+IAN+ G A + G+LNIGDQI+++NG SLV
Sbjct: 8 DVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLV 67
Query: 266 A 266
Sbjct: 68 G 68
>pdb|1Y7N|A Chain A, Solution Structure Of The Second Pdz Domain Of The Human
Neuronal Adaptor X11alpha
Length = 90
Score = 85.1 bits (209), Expect = 5e-17, Method: Composition-based stats.
Identities = 39/47 (82%), Positives = 44/47 (93%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
ICSL+RGGIAERGGVRVGHRIIEIN QSVVA PHEKIV++L+ +VGE
Sbjct: 35 ICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGE 81
>pdb|1U39|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 80
Score = 84.3 bits (207), Expect = 8e-17, Method: Composition-based stats.
Identities = 39/47 (82%), Positives = 44/47 (93%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
ICSL+RGGIAERGGVRVGHRIIEIN QSVVA PHEKIV++L+ +VGE
Sbjct: 26 ICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGE 72
>pdb|2YT8|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3 (Neuron-
Specific X11l2 Protein) (Neuronal Munc18-1-Interacting
Protein 3) (Mint-3) (Adapter Protein X11gamma)
Length = 94
Score = 79.3 bits (194), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/47 (76%), Positives = 40/47 (85%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
ICSLLRGGIAERGG+RVGHRIIEIN QSVVA PH +I+ LL + GE
Sbjct: 31 ICSLLRGGIAERGGIRVGHRIIEINGQSVVATPHARIIELLTEAYGE 77
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 77.8 bits (190), Expect = 9e-15, Method: Composition-based stats.
Identities = 37/62 (59%), Positives = 46/62 (74%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+EV + K +GE LGV +VESGWGS+LPT VIANL G A R G L+IGD++ A+NG SL
Sbjct: 11 REVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSL 70
Query: 265 VA 266
V
Sbjct: 71 VG 72
Score = 32.3 bits (72), Expect = 0.39, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVP 345
I +LL GG AER G + +G R+ IN S+V +P
Sbjct: 41 IANLLHGGPAERSGALSIGDRLTAINGTSLVGLP 74
>pdb|1N3H|A Chain A, Coupling Of Folding And Binding In The Ptb Domain Of The
Signaling Protein Shc
pdb|1OY2|A Chain A, Coupling Of Folding And Binding In The Ptb Domain Of The
Signaling Protein Shc
Length = 207
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 44/181 (24%)
Query: 16 PEDPVVDTGLGPGTLFRLKFLGSVQVDED------DPXXXXXXXXXXMVEEAAP--EGET 67
P D V +GPG + ++++G V+V + + +V EA P +G T
Sbjct: 41 PNDKV----MGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGAT 96
Query: 68 Q---PSTE-----------------VDLFISTEKIMVLNTDLKEIMMDHALRTISYIADI 107
+ P + + L +ST + ++ D K+I+ +H +++IS+ A
Sbjct: 97 RRRKPCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISF-ASG 155
Query: 108 GDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE--AQFIAQSIGQAFQVAYMEFL 165
GD +V+ A +P + CH+ E E AQ + +IGQAF++ + ++L
Sbjct: 156 GDPDTA----EYVAYVAKDP-----VNQRACHILECPEGLAQDVISTIGQAFELRFKQYL 206
Query: 166 K 166
+
Sbjct: 207 R 207
>pdb|2L1C|A Chain A, Shc-Ptb:biphosphorylated Integrin Beta3 Cytoplasmic Tail
Complex (1:1)
Length = 211
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 44/181 (24%)
Query: 16 PEDPVVDTGLGPGTLFRLKFLGSVQVDED------DPXXXXXXXXXXMVEEAAP--EGET 67
P D V +GPG + ++++G V+V + + +V EA P +G T
Sbjct: 45 PNDKV----MGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGAT 100
Query: 68 Q---PSTE-----------------VDLFISTEKIMVLNTDLKEIMMDHALRTISYIADI 107
+ P + + L +ST + ++ D K+I+ +H +++IS+ A
Sbjct: 101 RRRKPCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISF-ASG 159
Query: 108 GDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE--AQFIAQSIGQAFQVAYMEFL 165
GD +V+ A +P + CH+ E E AQ + +IGQAF++ + ++L
Sbjct: 160 GDPDTA----EYVAYVAKDP-----VNQRACHILECPEGLAQDVISTIGQAFELRFKQYL 210
Query: 166 K 166
+
Sbjct: 211 R 211
>pdb|1SHC|A Chain A, Shc Ptb Domain Complexed With A Trka Receptor
Phosphopeptide, Nmr, Minimized Average Structure
Length = 195
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 44/181 (24%)
Query: 16 PEDPVVDTGLGPGTLFRLKFLGSVQVDED------DPXXXXXXXXXXMVEEAAP--EGET 67
P D V +GPG + ++++G V+V + + +V EA P +G T
Sbjct: 29 PNDKV----MGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGAT 84
Query: 68 Q---PSTE-----------------VDLFISTEKIMVLNTDLKEIMMDHALRTISYIADI 107
+ P + + L +ST + ++ D K+I+ +H +++IS+ A
Sbjct: 85 RRRKPCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISF-ASG 143
Query: 108 GDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE--AQFIAQSIGQAFQVAYMEFL 165
GD +V+ A +P + CH+ E E AQ + +IGQAF++ + ++L
Sbjct: 144 GDPDTA----EYVAYVAKDP-----VNQRACHILECPEGLAQDVISTIGQAFELRFKQYL 194
Query: 166 K 166
+
Sbjct: 195 R 195
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 315 SLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
S+ GG+A R G+R+G +IE+N Q+VV V H ++VN++
Sbjct: 71 SVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMI 109
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 315 SLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
S+ GG+A R G+R+G +IE+N Q+VV V H ++VN++
Sbjct: 51 SVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMI 89
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 315 SLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
S+ GG+A R G+R+G +IE+N Q+VV V H ++VN++
Sbjct: 51 SVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMI 89
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
++V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 29 RKVLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 86
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
++V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 11 RKVLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 68
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
++V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 4 RKVLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 61
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLAT 355
I L++GG A+ G++VG I+ IN S+ + HE+++NL+ T
Sbjct: 114 ISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT 156
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 11/130 (8%)
Query: 234 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLKANGIEDHSF-------VKEMD 286
+ L A + A L GDQ++ +NG + + KA+ + +F +++
Sbjct: 29 IFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD-KAHKVLKQAFGEKITXTIRDRP 87
Query: 287 YQEVLNSQEIFGDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPH 346
++ + + + K +I S+++ A R G+ H I EIN Q+V+ +
Sbjct: 88 FERTITXHKDSTGHVGFIFK---NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKD 144
Query: 347 EKIVNLLATS 356
+I ++L+TS
Sbjct: 145 SQIADILSTS 154
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 311 KEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ + ++L GG A+R GVR G RI+E+N +V H+++V+L+
Sbjct: 45 QHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLI 87
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 31/147 (21%)
Query: 235 IANLAPAGAAARCGQLNIGDQIIAVNGVSLVAY-----MEFLKANGIEDHSFVKEMDYQ- 288
++NL G AAR QL++GD I AVNG++L + + LK G V E++Y+
Sbjct: 37 VSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVG---ERVVLEVEYEL 93
Query: 289 ---------------EVLNSQE--IFGDELQMFAKKELQKE----ICSLLRGGIAER-GG 326
EV +E FG ++ A + K I + GG A+R G
Sbjct: 94 PPVSIQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGT 153
Query: 327 VRVGHRIIEINNQSVVAVPHEKIVNLL 353
++ G R++ ++ ++ H + +++L
Sbjct: 154 IKPGDRLLSVDGIRLLGTTHAEAMSIL 180
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 205 KEVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 263
+E+++ +KG LG+ IV G + L +VI + GAAAR G+L GDQI+ VNGV
Sbjct: 17 QEMIIEISKGRSGLGLSIV-GGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVD 75
Query: 264 L 264
L
Sbjct: 76 L 76
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 311 KEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ + ++L GG A+R GVR G RI+E+N +V H+++V+L+
Sbjct: 45 QHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLI 87
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 11/130 (8%)
Query: 234 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLKANGIEDHSF-------VKEMD 286
+ L A + A L GDQ++ +NG + + KA+ + +F +++
Sbjct: 29 IFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD-KAHKVLKQAFGEKITMTIRDRP 87
Query: 287 YQEVLNSQEIFGDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPH 346
++ + + + K +I S+++ A R G+ H I EIN Q+V+ +
Sbjct: 88 FERTITMHKDSTGHVGFIFK---NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKD 144
Query: 347 EKIVNLLATS 356
+I ++L+TS
Sbjct: 145 SQIADILSTS 154
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 311 KEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ + ++L GG A+R GVR G RI+E+N +V H+++V+L+
Sbjct: 45 QHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLI 87
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Kiaa1526 Protein
Length = 103
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 211 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEF 270
K LG+ I E G + P I + G+A CGQL +G I+ VNG++L
Sbjct: 13 KKSAATLGIAI-EGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHR 71
Query: 271 LKANGIEDHSFVKEMDYQEVLNSQ 294
A I + K+ DY + L ++
Sbjct: 72 EAARIIAEAFKTKDRDYIDFLVTE 95
Score = 28.1 bits (61), Expect = 7.0, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
I ++ RGG A G ++VGH I+E+N ++ H + ++A +
Sbjct: 36 IVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEA 80
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSML----PT---VVIANLAPAGAAARCGQLNIGDQII 257
+E+ + KA GE LG+ I G PT + I+ ++P GAA R G+L +G +++
Sbjct: 11 RELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLL 70
Query: 258 AVNGVSLVA 266
VN SL+
Sbjct: 71 EVNQQSLLG 79
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 319 GGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
G G +RVG R++E+N QS++ + H + V LL SVG+
Sbjct: 55 GAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLL-RSVGD 94
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 198 FAKKELQKEVVVPKAKG-EILGVVIVES--GWGSMLPTVVIANLAPAGAAARCGQLNIGD 254
+ K++ K + + KG E LG I G P + + N+ P GAA + G+L GD
Sbjct: 23 YNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAP-IYVKNILPRGAAIQDGRLKAGD 81
Query: 255 QIIAVNGVSLVA 266
++I VNGV LV
Sbjct: 82 RLIEVNGVDLVG 93
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 316 LLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
L RG + G ++ G R+IE+N +V E++V+LL ++
Sbjct: 66 LPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRST 106
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 36.6 bits (83), Expect = 0.021, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 206 EVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
E + +KG LG+ IV G ++L ++I + GAA + G+L GDQI+ VNG+ L
Sbjct: 5 ETTIEISKGRTGLGLSIV-GGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDL 63
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 36.6 bits (83), Expect = 0.022, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 206 EVVVPKAKGEILGVVIV------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 259
+VV+ + + E G VI+ ESG +P I + A RC +L +GD+I+AV
Sbjct: 13 DVVIHRKENEGFGFVIISSLNRPESGSTITVPHK-IGRIIDGSPADRCAKLKVGDRILAV 71
Query: 260 NGVSLV 265
NG S++
Sbjct: 72 NGQSII 77
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 312 EICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+I ++ G A+R ++VG RI+ +N QS++ +PH IV L+
Sbjct: 46 KIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLI 88
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 18/144 (12%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL-----VAYMEFLKANG--IEDHSFVK 283
P++ I + P GAAA+ G+L + D I+ VN V + A +E LK G + + +
Sbjct: 89 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 148
Query: 284 EMDYQEVLNSQEIFGDELQMFA----------KKELQKEICSLLRGGIAERGG-VRVGHR 332
+ ++V+ + I G + F+ + + ++ GG A + G +++G +
Sbjct: 149 KPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDK 208
Query: 333 IIEINNQSVVAVPHEKIVNLLATS 356
I+ +N+ + V HE V L +
Sbjct: 209 ILAVNSVGLEDVMHEDAVAALKNT 232
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 201 KELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 260
+E ++ V+ + G +V E G G + I+ + G A G+L GDQI++VN
Sbjct: 306 REPRRIVIHRGSTGLGFNIVGGEDGEG-----IFISFILAGGPADLSGELRKGDQILSVN 360
Query: 261 GVSL 264
GV L
Sbjct: 361 GVDL 364
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 35.8 bits (81), Expect = 0.033, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 211 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
K G LG+ I SG ++I++L G A R G ++IGD+I+A+N SL
Sbjct: 12 KRYGGPLGITI--SGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSL 63
Score = 35.8 bits (81), Expect = 0.034, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I SL +GG+AER G + +G RI+ IN+ S+ P + ++LL
Sbjct: 34 ISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLL 75
>pdb|1NTE|A Chain A, Crystal Structure Analysis Of The Second Pdz Domain Of
Syntenin
pdb|1R6J|A Chain A, Ultrahigh Resolution Crystal Structure Of Syntenin Pdz2
Length = 82
Score = 35.4 bits (80), Expect = 0.051, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 312 EICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+I S+++ A R G+ H I EIN Q+V+ + +I ++L+TS
Sbjct: 26 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTS 70
>pdb|1OBY|A Chain A, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With
A Syndecan-4 Peptide.
pdb|1OBY|B Chain B, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With
A Syndecan-4 Peptide.
pdb|1OBX|A Chain A, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With
An Interleukin 5 Receptor Alpha Peptide
Length = 79
Score = 35.4 bits (80), Expect = 0.052, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 312 EICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+I S+++ A R G+ H I EIN Q+V+ + +I ++L+TS
Sbjct: 26 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTS 70
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 35.0 bits (79), Expect = 0.057, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLKANGIEDH 279
P + I L P AA G+L++GD+I+ VNG SL+ + +L+A + H
Sbjct: 36 PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLG-LGYLRAVDLIRH 83
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 35.0 bits (79), Expect = 0.064, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ ++ +A GAA R G L +GD+++++NGV +
Sbjct: 40 IFVSRIAEGGAAHRAGTLQVGDRVLSINGVDV 71
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 18/144 (12%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL-----VAYMEFLKANG--IEDHSFVK 283
P++ I + P GAAA+ G+L + D I+ VN V + A +E LK G + + +
Sbjct: 35 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 94
Query: 284 EMDYQEVLNSQEIFGDELQMFA----------KKELQKEICSLLRGGIAERGG-VRVGHR 332
+ ++V+ + I G + F+ + + ++ GG A + G +++G +
Sbjct: 95 KPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDK 154
Query: 333 IIEINNQSVVAVPHEKIVNLLATS 356
I+ +N+ + V HE V L +
Sbjct: 155 ILAVNSVGLEDVMHEDAVAALKNT 178
>pdb|1WJ1|A Chain A, Solution Structure Of Phosphotyrosine Interaction Domain
Of Mouse Numb Protein
Length = 156
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/143 (19%), Positives = 64/143 (44%), Gaps = 22/143 (15%)
Query: 31 FRLKFLGSVQVDEDDPXXXXXXXXXXMVEEAAP--EGETQPSTEVDLFISTEKIMVLNTD 88
F +K+LG V+VDE + E+A + + + + L++S + + V++
Sbjct: 28 FPVKYLGHVEVDE--------SRGMHICEDAVKRLKATGKKAVKAVLWVSADGLRVVDEK 79
Query: 89 LKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFES--DEA 146
K++++D + +S+ A + + ++ ++ T + ICH F + D
Sbjct: 80 TKDLIVDQTIEKVSFCAPDRNFDRAFS---YICRDGT-------TRRWICHCFMAVKDTG 129
Query: 147 QFIAQSIGQAFQVAYMEFLKANG 169
+ ++ ++G AF K +G
Sbjct: 130 ERLSHAVGCAFAACLERKQKRSG 152
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 217 LGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLK 272
LG+ I+ G G+ + + + GAA R G++ + DQI+ V+G+SLV +
Sbjct: 93 LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFA 152
Query: 273 A 273
A
Sbjct: 153 A 153
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 18/144 (12%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL-----VAYMEFLKANG--IEDHSFVK 283
P++ I + P GAAA+ G+L + D I+ VN V + A +E LK G + + +
Sbjct: 32 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 91
Query: 284 EMDYQEVLNSQEIFGDELQMFA----------KKELQKEICSLLRGGIAERGG-VRVGHR 332
+ ++V+ + I G + F+ + + ++ GG A + G +++G +
Sbjct: 92 KPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDK 151
Query: 333 IIEINNQSVVAVPHEKIVNLLATS 356
I+ +N+ + V HE V L +
Sbjct: 152 ILAVNSVGLEDVMHEDAVAALKNT 175
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA 266
+ + N+ P GAA + G+L GD++I VNGV L
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAG 74
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 316 LLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
L RG + G ++ G R+IE+N + E++V+LL ++
Sbjct: 47 LPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRST 87
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 18/144 (12%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL-----VAYMEFLKANG--IEDHSFVK 283
P++ I + P GAAA+ G+L + D I+ VN V + A +E LK G + + +
Sbjct: 42 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR 101
Query: 284 EMDYQEVLNSQEIFGDELQMFA----------KKELQKEICSLLRGGIAERGG-VRVGHR 332
+ ++V+ + I G + F+ + + ++ GG A + G +++G +
Sbjct: 102 KPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDK 161
Query: 333 IIEINNQSVVAVPHEKIVNLLATS 356
I+ +N+ + V HE V L +
Sbjct: 162 ILAVNSVGLEDVMHEDAVAALKNT 185
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA 266
+ + N+ P GAA + G+L GD++I VNGV L
Sbjct: 35 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAG 68
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 217 LGVVIVESGWGSM---LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
LG IV G+GS LP + + + GAA+ G+L GDQIIAVNG SL
Sbjct: 38 LGFSIV-GGYGSPHGDLP-IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSL 86
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 318 RGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVG 358
+G +E G ++ G +II +N QS+ V HE+ V +L + G
Sbjct: 63 KGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG 103
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-----YMEFLKA 273
+ I+ + P G A R G L GDQ+++VNGVS+ +E LKA
Sbjct: 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKA 77
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVG 358
I ++ GG+A+R GG++ G +++ +N SV HEK V LL + G
Sbjct: 34 ISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQG 80
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 319 GGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
G +AE+ G+RVG +I+ +N++S+ V H + V L S
Sbjct: 45 GSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGS 82
>pdb|2M38|A Chain A, Ptb Domain Of Aida1
Length = 153
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 28/148 (18%)
Query: 31 FRLKFLGSVQVDEDDPXXXXXXXXXXMVEEAAPEGETQPSTE-------VDLFISTEKIM 83
++ +LGS+ + E M Q STE + L +S + +
Sbjct: 21 YKAAYLGSMLIKELRGTESTQDACAKM------RANCQKSTEQMKKVPTIILSVSAKGVK 74
Query: 84 VLNTDLKEIMMDHALRTISYIA-DIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFE 142
++ K I+ +H +R IS A D DL +++++ ++ CHVF
Sbjct: 75 FIDATNKNIIAEHEIRNISCAAQDPEDLSTFA----YITKDL-------KSNHHYCHVFT 123
Query: 143 SDEAQFIAQ---SIGQAFQVAYMEFLKA 167
+ + A+ ++GQAF+VAY L+A
Sbjct: 124 AFDVNLAAEIILTLGQAFEVAYQLALQA 151
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 24/143 (16%)
Query: 234 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLKANG-IEDHSFVK------EMD 286
+I+ + A RCG L IGD+++A+NG+ F +AN + D S E D
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGIP-TEDSTFEEANQLLRDSSITSKVTLEIEFD 97
Query: 287 YQE-VLNSQEIFGDELQMFAKKELQKEICS--------------LLRGGIAER-GGVRVG 330
E V+ S F +L EL I S + +G +A R G + +G
Sbjct: 98 VAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELG 157
Query: 331 HRIIEINNQSVVAVPHEKIVNLL 353
+++ I+N + + E V +L
Sbjct: 158 DKLLAIDNIRLDSCSMEDAVQIL 180
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 232 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
++ + + GAA + G+L IGD+++AVN VSL
Sbjct: 34 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSL 66
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 217 LGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLK 272
LG+ I+ G G+ + + + GAA R G++ + DQI+ V+G+SLV +
Sbjct: 17 LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFA 76
Query: 273 A 273
A
Sbjct: 77 A 77
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 33.1 bits (74), Expect = 0.25, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA 266
+ + ++ GAA++ G+L + DQ+IAVNG SL+
Sbjct: 41 IFVKSIINGGAASKDGRLRVNDQLIAVNGESLLG 74
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAY-----MEFLKANGIEDHSFVKEMDY 287
VVI ++ P G A R G + GD++++V+G+ L+ M LK G ++ + + E D
Sbjct: 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG-QEAALLIEYDV 92
Query: 288 QEV 290
E
Sbjct: 93 SET 95
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 193 DELQMFAKKELQKEV-------VVPKAKGEILGVVIVESGWGSMLP----TVVIANLAPA 241
D + A+ EL+K V V + E LG+ I+ G G+ + + + +
Sbjct: 62 DPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEG 121
Query: 242 GAAARCGQLNIGDQIIAVNGVSLVAYMEFLKAN 274
GAA R G++ + D ++ V+G SLV + A+
Sbjct: 122 GAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAAS 154
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 32.7 bits (73), Expect = 0.30, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA 266
+ + ++ GAA++ G+L + DQ+IAVNG SL+
Sbjct: 38 IFVKSIINGGAASKDGRLRVNDQLIAVNGESLLG 71
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ + + P GAA G+++ GD+++AVNGVSL
Sbjct: 39 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSL 70
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 193 DELQMFAKKELQKEV-------VVPKAKGEILGVVIVESGWGSMLP----TVVIANLAPA 241
D + A+ EL+K V V + E LG+ I+ G G+ + + + +
Sbjct: 62 DPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEG 121
Query: 242 GAAARCGQLNIGDQIIAVNGVSLVAYMEFLKAN 274
GAA R G++ + D ++ V+G SLV + A+
Sbjct: 122 GAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAAS 154
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 222 VESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSLVAYME-----FLKANG 275
V+ G+ +P V+++ +AP A C +LN GDQ++ +NG + + F+KA+
Sbjct: 35 VKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS- 92
Query: 276 IEDHS 280
E HS
Sbjct: 93 CERHS 97
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 222 VESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSLVAYME-----FLKANG 275
V+ G+ +P V+++ +AP A C +LN GDQ++ +NG + + F+KA+
Sbjct: 33 VKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS- 90
Query: 276 IEDHS 280
E HS
Sbjct: 91 CERHS 95
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 222 VESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSLVAYME-----FLKANG 275
V+ G+ +P V+++ +AP A C +LN GDQ++ +NG + + F+KA+
Sbjct: 22 VKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS- 79
Query: 276 IEDHS 280
E HS
Sbjct: 80 CERHS 84
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ + + P GAA G+++ GD+++AVNGVSL
Sbjct: 42 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSL 73
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ + + P GAA G+++ GD+++AVNGVSL
Sbjct: 34 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSL 65
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
P++ I + P GAAA+ G+L + D I+ VN V +
Sbjct: 32 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 65
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 32.3 bits (72), Expect = 0.39, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV-----AYMEFLKANGIEDH 279
P V+I++L GAA + G + GD I+AVN LV + +E L+ E H
Sbjct: 26 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETH 79
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL-----VAYMEFLKANG 275
P++ I + P GAAA+ G+L + D I+ VN V + A +E LK G
Sbjct: 31 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG 80
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL-----VAYMEFLKANG 275
P++ I + P GAAA+ G+L + D I+ VN V + A +E LK G
Sbjct: 31 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG 80
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 290 VLNSQEIFGDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKI 349
VL G ++ A+ L I + G AE G++VG +I+E+N +S + + H++
Sbjct: 27 VLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEA 86
Query: 350 VNLLATS 356
V LL +S
Sbjct: 87 VRLLKSS 93
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated Peptide
Length = 127
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV-----AYMEFLKANGIEDH 279
P V+I++L GAA + G + GD I+AVN LV + +E L+ E H
Sbjct: 33 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETH 86
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 217 LGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLK 272
LG+ I+ G G+ + + + GAA R G++ + DQI+ V+G+SLV +
Sbjct: 22 LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFA 81
Query: 273 A 273
A
Sbjct: 82 A 82
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 32.3 bits (72), Expect = 0.42, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV-----AYMEFLKANGIEDH 279
P V+I++L GAA + G + GD I+AVN LV + +E L+ E H
Sbjct: 28 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETH 81
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 232 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
++ + ++ GAA + G+L IGD+++AVN V L
Sbjct: 34 SIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGL 66
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 240 PAGAAARCGQLNIGDQIIAVNGVSL 264
P GAA G+++ GD+++AVNGVSL
Sbjct: 51 PQGAAESDGRIHKGDRVLAVNGVSL 75
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 240 PAGAAARCGQLNIGDQIIAVNGVSL 264
P GAA G+++ GD+++AVNGVSL
Sbjct: 42 PQGAAESDGRIHKGDRVLAVNGVSL 66
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 244 AARCGQLNIGDQIIAVNGV 262
A RCG L IGD+++A+NG+
Sbjct: 49 AERCGVLQIGDRVMAINGI 67
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse Glutamate
Receptor Interacting Protein 1a-L (Grip1) Homolog
Length = 122
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 244 AARCGQLNIGDQIIAVNGV 262
A RCG L IGD+++A+NG+
Sbjct: 58 AERCGVLQIGDRVMAINGI 76
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 240 PAGAAARCGQLNIGDQIIAVNGVSL 264
P GAA G+++ GD+++AVNGVSL
Sbjct: 42 PQGAAESDGRIHKGDRVLAVNGVSL 66
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 234 VIANLAPAGAAARCGQLNIGDQIIAVNGVS 263
++ + P A RCG L +GD+++++NG++
Sbjct: 48 LVCFIEPDSPAERCGLLQVGDRVLSINGIA 77
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 31.6 bits (70), Expect = 0.62, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 235 IANLAPAGAAARCGQLNIGDQIIAVNGVS 263
+ LA G A R G++ +GDQII +NG S
Sbjct: 40 VLRLAEDGPAIRNGRMRVGDQIIEINGES 68
Score = 29.3 bits (64), Expect = 3.8, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 297 FGDELQMFAKKELQKEICSLLRGGIAERGG-VRVGHRIIEINNQSVVAVPHEKIVNLLAT 355
FG ++ + ++ + L G A R G +RVG +IIEIN +S + H + + L+ +
Sbjct: 24 FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS 83
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 31.6 bits (70), Expect = 0.62, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLKANGIEDHSFVKEMDYQ 288
+ I + P A CG+L +GD+I+++NG + E + I++ F E++ Q
Sbjct: 39 IFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQ 94
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 31.6 bits (70), Expect = 0.64, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 232 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
++ + + GAA + G+L IGD+++AVN V+L
Sbjct: 33 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVAL 65
Score = 28.1 bits (61), Expect = 8.3, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 313 ICSLLRGGIAERGG-VRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+ ++ GG A + G +++G +++ +NN ++ V HE+ V L +
Sbjct: 36 VTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNT 80
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 232 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 34 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGL 66
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 232 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
++ + + GAA + G+L IGD+I+AVN V L
Sbjct: 34 SIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 66
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 31.6 bits (70), Expect = 0.76, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 232 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
++ + + GAA + G+L IGD+++AVN V+L
Sbjct: 39 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVAL 71
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 262
P + I+ L P G A G L + D++I VNG+
Sbjct: 38 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGI 69
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 262
P + I+ L P G A G L + D++I VNG+
Sbjct: 40 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGI 71
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 262
P + I+ L P G A G L + D++I VNG+
Sbjct: 66 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGI 97
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 215 EILGVVIVESGWGSMLP----TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEF 270
E LG+ I+ G G+ + + + + GAA R G++ + D ++ V+G SLV +
Sbjct: 15 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQS 74
Query: 271 LKAN 274
A+
Sbjct: 75 FAAS 78
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 232 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 34 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCL 66
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 232 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 42 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 74
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 230 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 262
+P + I+ L P G A G L + D+++ VNG+
Sbjct: 64 VPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGI 96
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 211 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ GE LG+ +V + P V I +L G AA+ G+L+ D+++A+NG L
Sbjct: 12 RDSGEQLGIKLVRR---TDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDL 62
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 230 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ +V+I+ + GAA + G L+ GD+++ +NG+ +
Sbjct: 47 MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEI 81
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 313 ICSLLRGGIAERGG-VRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+ ++ GG A++ G ++VG R++ +NN S+ V HE+ V +L +
Sbjct: 58 VTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNT 102
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 232 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
++ + + GAA + G+L +GD+++ VN SL
Sbjct: 55 SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 87
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 315 SLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLAT 355
S+ GG A + GV+ G RII++N V H ++V L+ +
Sbjct: 35 SVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKS 75
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 281 FVKEMDYQ--EVLNSQEIFGDELQMFAKKELQKEICSLLRGGIAERGG-VRVGHRIIEIN 337
+ + MD+ E+ + FG L+ + + + L G AER G +R+G I+EIN
Sbjct: 19 YFQSMDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEIN 78
Query: 338 NQSVVAVPHEKIVNLL 353
++ + H + + L+
Sbjct: 79 GETTKNMKHSRAIELI 94
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 235 IANLAPAGAAARCGQLNIGDQIIAVNG 261
+ LA G A R G++ IGD+I+ +NG
Sbjct: 53 VLRLAEDGPAERSGKMRIGDEILEING 79
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL-----VAYMEFLKANGIEDHSFVK 283
+ + L G A RCG+L +GD ++ +NG S +E ++A G + H ++
Sbjct: 40 LAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIR 95
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 232 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 40 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 72
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 262
P + I+ L P G A G L + D++I VNG+
Sbjct: 66 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGI 97
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 232 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 29 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCL 61
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTV--VIANLAPAGAAARCGQLNIGDQIIAVNGV 262
+ V + K + LG+ I G GS L V IA + P G AA+ +L +GD+I+ + G
Sbjct: 26 RTVEMKKGPTDSLGISIA-GGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGT 84
Query: 263 SLVAYMEFLKANGIEDHSFVKEM 285
S N +++ S EM
Sbjct: 85 STEGMTHTQAVNLLKNASGSIEM 107
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 319 GGIAERGGVRVGHRIIEINNQSVVAVPHEKIV 350
G A R G+R R+IE+N Q+V + H ++V
Sbjct: 38 GSPAARSGLRAQDRLIEVNGQNVEGLRHAEVV 69
>pdb|3QIK|A Chain A, Crystal Structure Of The First Pdz Domain Of Prex1
Length = 101
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 290 VLNSQEIFGDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKI 349
+L +E +G +++ K + K S+ RG +AE G++VG +I IN V P ++
Sbjct: 23 ILPQEEDYGFDIEEKNKAVVVK---SVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEV 79
Query: 350 VNLLATS 356
++L S
Sbjct: 80 ESILNQS 86
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA 266
+ I ++ GAA + G+L + DQ+IAVNG +L+
Sbjct: 57 IFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLG 90
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 232 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
++ I + GAA + G+L IGD+++AVN +L
Sbjct: 34 SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 66
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 313 ICSLLRGGIAERGG-VRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
I ++ GG A++ G +++G R++ +NN ++ V HE+ V L +
Sbjct: 37 ITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT 81
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 232 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
++ + + GAA + G+L IGD+++AVN V L
Sbjct: 30 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 62
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 262
P + I+++ P +A G L IGDQI+ VNGV
Sbjct: 27 PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGV 57
>pdb|1V62|A Chain A, Solution Structure Of The 3rd Pdz Domain Of Grip2
Length = 117
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 207 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
V + K G LG+ + + + + I + PA R G L+ GD I++++G S+
Sbjct: 19 VEIVKTPGSALGISLTTTSLRNK-SVITIDRIKPASVVDRSGALHPGDHILSIDGTSM 75
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+++A + GAA R G +++GD++ VNG+ +
Sbjct: 30 IIVARIXRGGAADRSGLIHVGDELREVNGIPV 61
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA 266
+ I ++ P GAA G+L GD++I+V+G ++
Sbjct: 29 IYIGHIVPLGAADTDGRLRSGDELISVDGTPVIG 62
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
P + I + P GAAA G+L + D I+ VN V +
Sbjct: 39 PGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDV 72
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 204 QKEVVVPKAKGEILGVVIVESG----WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 259
+K V + K GE LG+ + W LP VI+ + P G +R G++ GD ++ V
Sbjct: 25 EKVVNIQKDPGESLGMTVAGGASHREWD--LPIYVIS-VEPGGVISRDGRIKTGDILLNV 81
Query: 260 NGVSL 264
+GV L
Sbjct: 82 DGVEL 86
>pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mg And Zn
pdb|3F2C|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp And Mn
pdb|3F2D|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mn And Zn
Length = 1041
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 282 VKEMDYQEVLNSQEIFGDELQMFAKKELQKEICSLLRGGIA 322
++EM Y+ ++EI+GD L ++ L+KE+ S++ G A
Sbjct: 419 IREMSYRR---AKEIYGDPLPKLVEERLEKELKSIIGHGFA 456
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 262
P + I+++ P +A G L IGDQI+ VNGV
Sbjct: 41 PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGV 71
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 319 GGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
GG A G+ G RII++N +SV+ + +++ L+ S
Sbjct: 71 GGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNS 108
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 214 GEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
G LG IV G VV+ + P G A R G+L GD I+ + G ++
Sbjct: 25 GSGLGFGIV----GGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNV 71
>pdb|3ID2|A Chain A, Crystal Structure Of Rsep Pdz2 Domain
pdb|3ID2|B Chain B, Crystal Structure Of Rsep Pdz2 Domain
Length = 90
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 234 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFL 271
V+ N+ P AA++ G L GD+I+ V+G L ++ F+
Sbjct: 6 VLENVQPNSAASKAG-LQAGDRIVKVDGQPLTQWVTFV 42
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 230 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
L ++A + G R G L++GD+I +NG+S+
Sbjct: 24 LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISV 58
>pdb|3ID4|A Chain A, Crystal Structure Of Rsep Pdz2 Domain Fused Gkaspv Peptide
Length = 93
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 234 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFL 271
V+ N+ P AA++ G L GD+I+ V+G L ++ F+
Sbjct: 5 VLENVQPNSAASKAG-LQAGDRIVKVDGQPLTQWVTFV 41
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAY 267
+ + ++ + A G++ IGDQIIAV+G +L +
Sbjct: 35 IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGF 69
>pdb|3ID3|A Chain A, Crystal Structure Of Rsep Pdz2 I304a Domain
pdb|3ID3|B Chain B, Crystal Structure Of Rsep Pdz2 I304a Domain
Length = 89
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 234 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFL 271
V+ N+ P AA++ G L GD+I+ V+G L ++ F+
Sbjct: 5 VLENVQPNSAASKAG-LQAGDRIVKVDGQPLTQWVTFV 41
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 201 KELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 260
+E ++ V+ + G +V E G G + I+ + G A G+L GDQI++VN
Sbjct: 13 REPRRIVIHRGSTGLGFNIVGGEDGEG-----IFISFILAGGPADLSGELRKGDQILSVN 67
Query: 261 GVSL 264
GV L
Sbjct: 68 GVDL 71
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 307 KELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
KE+QK GG A+ G+ IIE+N +V+ P+EK+V+ + +S
Sbjct: 36 KEVQK-------GGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSS 78
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLKANGI 276
P V I + P G + G+L GDQ++++N S++ + F +A I
Sbjct: 41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIG-VSFEEAKSI 85
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 29.3 bits (64), Expect = 3.1, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 319 GGIAERGGVRVGHRIIEINNQSVVAVPHEKIVN 351
G AE+ G+ G R++E+N ++V H+++V+
Sbjct: 36 GSPAEKAGLLAGDRLVEVNGENVEKETHQQVVS 68
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 319 GGIAERGGVRVGHRIIEINNQSVVAVPHEKIVN 351
G AE+ G+ G R++E+N ++V H+++V+
Sbjct: 37 GSPAEKAGLLAGDRLVEVNGENVEKETHQQVVS 69
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 307 KELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
KE+QK GG A+ G+ IIE+N +V+ P+EK+V+ + +S
Sbjct: 32 KEVQK-------GGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSS 74
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 197 MFAKKELQ-KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQ 255
MF+ +++ K+V + + K E + +E G S + VV++ + GAA R G + GD+
Sbjct: 8 MFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDE 67
Query: 256 IIAVNGVSLVAY 267
I+A+NG + Y
Sbjct: 68 IMAINGKIVTDY 79
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ I+ + G A G+L GDQI++VNGV L
Sbjct: 40 IFISFILAGGPADLSGELRKGDQILSVNGVDL 71
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 201 KELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 260
+E ++ V+ + G +V E G G + I+ + G A G+L GDQI++VN
Sbjct: 5 REPRRIVIHRGSTGLGFNIVGGEXGEG-----IFISFILAGGPADLSGELRKGDQILSVN 59
Query: 261 GVSL 264
GV L
Sbjct: 60 GVDL 63
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 201 KELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 260
+E ++ V+ + G +V E G G + I+ + G A G+L GDQI++VN
Sbjct: 10 REPRRIVIHRGSTGLGFNIVGGEXGEG-----IFISFILAGGPADLSGELRKGDQILSVN 64
Query: 261 GVSL 264
GV L
Sbjct: 65 GVDL 68
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVN-----GVSLVAYMEFLKA 273
+VI +L G A R G L GD++++VN SL +E LKA
Sbjct: 46 IVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKA 91
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 28.9 bits (63), Expect = 5.2, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 227 GSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
GS + ++ + +G AA+ G L I D+II VNG L
Sbjct: 37 GSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDL 74
Score = 28.5 bits (62), Expect = 6.8, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 319 GGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
G A+ GG+++ RIIE+N + + H++ V T+
Sbjct: 52 GPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTA 89
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGV 262
+ I+ + P AA+ G++ GD+II +NG+
Sbjct: 50 IYISEIDPNSIAAKDGRIREGDRIIQINGI 79
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 320 GIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
G A R GVRVG +++E+N ++ H + V L
Sbjct: 57 GPAARAGVRVGDKLLEVNGVALQGAEHHEAVEAL 90
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ I+ ++ G AAR G + +GD+++ VNGV+L
Sbjct: 48 IFISRVSEEGPAARAG-VRVGDKLLEVNGVAL 78
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ V V K + LG+ I + G + +P ++I+ + P AA + L +GD I++VNG L
Sbjct: 5 RRVRVVKQEAGGLGISI-KGGRENRMP-ILISKIFPGLAADQSRALRLGDAILSVNGTDL 62
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 320 GIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLAT 355
G A R GV+ G RII++N V H ++V L+ +
Sbjct: 39 GAAMRAGVQTGDRIIKVNGTLVTHSNHLEVVKLIKS 74
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 320 GIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
G A R GVRVG +++E+N ++ H + V L
Sbjct: 45 GPAARAGVRVGDKLLEVNGVALQGAEHHEAVEAL 78
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ I+ ++ G AAR G + +GD+++ VNGV+L
Sbjct: 36 IFISRVSEEGPAARAG-VRVGDKLLEVNGVAL 66
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
P + I + P GAAA G+L + D ++ VN V +
Sbjct: 34 PGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDV 67
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 220 VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA 266
++ G G + + ++ GAA G+L GDQ+++V+G SLV
Sbjct: 21 IVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVG 67
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 319 GGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSV 357
G AE+ G+ G R++E+N ++V H+++V+ + ++
Sbjct: 37 GSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAAL 75
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 319 GGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSV 357
G AE+ G+ G R++E+N ++V H+++V+ + ++
Sbjct: 37 GSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAAL 75
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 220 VIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA 266
++ G G + + ++ GAA G+L GDQ+++V+G SLV
Sbjct: 21 IVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVG 67
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 27.7 bits (60), Expect = 9.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ ++ + GAAA G+L GD+I++VNG L
Sbjct: 41 IYVSRIKENGAAALDGRLQEGDKILSVNGQDL 72
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 27.7 bits (60), Expect = 9.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ ++ + GAAA G+L GD+I++VNG L
Sbjct: 39 IYVSRIKENGAAALDGRLQEGDKILSVNGQDL 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,652,115
Number of Sequences: 62578
Number of extensions: 367607
Number of successful extensions: 1067
Number of sequences better than 100.0: 170
Number of HSP's better than 100.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 830
Number of HSP's gapped (non-prelim): 238
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)