Query psy5022
Match_columns 359
No_of_seqs 397 out of 2140
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 23:50:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3605|consensus 100.0 6E-70 1.3E-74 523.3 15.1 336 17-359 438-806 (829)
2 cd01208 X11 X11 Phosphotyrosin 100.0 1.3E-42 2.7E-47 285.1 16.5 146 25-170 1-156 (156)
3 cd01273 CED-6 CED-6 Phosphotyr 100.0 5.9E-35 1.3E-39 244.0 14.3 135 22-166 1-142 (142)
4 cd01274 AIDA-1b AIDA-1b Phosph 100.0 2.2E-32 4.7E-37 223.0 12.0 122 29-165 2-127 (127)
5 cd01268 Numb Numb Phosphotyros 100.0 4.7E-32 1E-36 221.9 12.2 126 21-163 5-134 (138)
6 cd01267 CED6_AIDA1b Phosphotyr 100.0 1.3E-31 2.7E-36 221.9 14.0 127 29-165 2-132 (132)
7 cd01270 DYC-1 DYC-1 (DYB-1 bin 100.0 8.8E-32 1.9E-36 219.3 12.3 123 27-162 1-139 (140)
8 cd01212 JIP JNK-interacting pr 100.0 9.5E-31 2.1E-35 218.0 13.2 128 30-168 4-139 (148)
9 cd01209 SHC SHC phosphotyrosin 100.0 6.5E-30 1.4E-34 211.3 10.6 129 24-164 6-160 (160)
10 cd01215 Dab Disabled (Dab) Pho 100.0 5.8E-29 1.2E-33 202.3 11.6 124 26-163 10-135 (139)
11 cd01216 Fe65 Fe65 Phosphotyros 99.9 2.7E-27 5.8E-32 192.0 12.1 119 30-165 3-123 (123)
12 PF00640 PID: Phosphotyrosine 99.9 4E-26 8.8E-31 191.0 11.8 127 31-167 1-140 (140)
13 smart00462 PTB Phosphotyrosine 99.9 2.5E-25 5.4E-30 184.9 14.7 130 27-168 2-132 (134)
14 cd01271 Fe65_C Fe65 C-terminal 99.9 9.5E-26 2.1E-30 178.3 10.6 119 30-165 3-124 (124)
15 KOG3536|consensus 99.9 3.5E-26 7.7E-31 205.0 2.3 147 14-170 30-180 (321)
16 cd00934 PTB Phosphotyrosine-bi 99.9 1.3E-23 2.9E-28 171.7 13.0 122 28-161 1-123 (123)
17 cd01214 CG8312 CG8312 Phosphot 99.9 2.6E-23 5.7E-28 167.5 10.8 125 30-166 3-131 (133)
18 KOG3209|consensus 99.9 2.3E-21 4.9E-26 189.8 13.4 152 202-356 752-971 (984)
19 KOG3209|consensus 99.8 1.2E-20 2.5E-25 184.8 14.8 178 175-356 617-826 (984)
20 KOG3775|consensus 99.8 4.1E-19 8.8E-24 162.9 9.3 148 3-168 318-473 (482)
21 cd01269 PLX Pollux (PLX) Phosp 99.8 7.2E-18 1.6E-22 132.4 10.8 121 30-160 3-128 (129)
22 PF14719 PID_2: Phosphotyrosin 99.7 3.4E-17 7.4E-22 140.2 11.9 126 30-168 1-130 (182)
23 KOG3537|consensus 99.7 3.4E-17 7.4E-22 153.0 12.1 144 7-167 15-161 (543)
24 cd01211 GAPCenA GAPCenA Phosph 99.7 1.2E-16 2.7E-21 125.7 10.7 111 32-157 5-124 (125)
25 cd01213 tensin Tensin Phosphot 99.6 4.7E-15 1E-19 121.5 10.4 120 25-153 2-133 (138)
26 KOG3535|consensus 99.5 3.2E-14 6.9E-19 132.5 10.4 124 26-163 46-173 (557)
27 KOG3697|consensus 99.5 3.3E-15 7.1E-20 133.0 3.6 131 21-162 9-169 (345)
28 KOG3580|consensus 99.5 5E-14 1.1E-18 136.5 12.0 148 204-359 9-270 (1027)
29 PRK10779 zinc metallopeptidase 99.5 1.4E-13 3E-18 136.6 12.1 121 232-358 127-268 (449)
30 TIGR02037 degP_htrA_DO peripla 99.5 5.9E-13 1.3E-17 131.5 13.0 123 231-356 257-407 (428)
31 PRK10942 serine endoprotease; 99.4 2.1E-12 4.5E-17 128.6 14.1 123 231-356 311-453 (473)
32 PRK10139 serine endoprotease; 99.4 2.4E-12 5.1E-17 127.6 13.7 123 231-356 290-435 (455)
33 TIGR00054 RIP metalloprotease 99.4 2E-12 4.2E-17 127.2 12.6 117 231-358 128-250 (420)
34 KOG3580|consensus 99.3 2E-11 4.2E-16 118.8 9.9 58 295-354 417-474 (1027)
35 cd01272 FE65_N Fe65 Phosphotyr 99.2 1.3E-10 2.8E-15 92.4 10.3 115 29-153 2-126 (138)
36 PF00595 PDZ: PDZ domain (Also 99.2 3.1E-11 6.6E-16 91.1 6.5 66 293-358 8-74 (81)
37 KOG3550|consensus 99.2 2.7E-11 5.9E-16 98.5 6.4 71 289-359 95-166 (207)
38 PF08416 PTB: Phosphotyrosine- 99.2 5.4E-10 1.2E-14 91.9 12.6 116 31-156 2-120 (131)
39 PF10480 ICAP-1_inte_bdg: Beta 99.2 4.4E-10 9.5E-15 95.0 11.6 122 29-162 61-196 (200)
40 PF00595 PDZ: PDZ domain (Also 99.0 1.6E-09 3.4E-14 81.7 8.4 75 206-282 1-81 (81)
41 cd00136 PDZ PDZ domain, also c 99.0 2.5E-09 5.5E-14 78.0 7.8 61 296-358 2-62 (70)
42 cd00992 PDZ_signaling PDZ doma 98.8 1.5E-08 3.2E-13 76.2 8.1 64 294-357 11-74 (82)
43 KOG3553|consensus 98.8 5.8E-09 1.3E-13 79.0 4.1 61 296-356 36-106 (124)
44 PF13180 PDZ_2: PDZ domain; PD 98.7 9E-08 1.9E-12 72.3 7.9 67 216-286 2-74 (82)
45 cd00988 PDZ_CTP_protease PDZ d 98.6 1.2E-07 2.5E-12 71.9 6.9 60 296-358 3-62 (85)
46 smart00228 PDZ Domain present 98.6 2.6E-07 5.7E-12 69.6 8.1 62 295-356 12-73 (85)
47 PF13180 PDZ_2: PDZ domain; PD 98.6 1.1E-07 2.3E-12 71.8 5.9 56 296-354 2-57 (82)
48 cd00992 PDZ_signaling PDZ doma 98.6 4E-07 8.8E-12 68.3 9.1 74 205-281 2-81 (82)
49 KOG3550|consensus 98.5 3.4E-07 7.3E-12 74.8 7.3 77 203-282 90-172 (207)
50 smart00228 PDZ Domain present 98.5 1.5E-06 3.3E-11 65.3 9.5 75 206-284 4-84 (85)
51 cd00136 PDZ PDZ domain, also c 98.4 1.3E-06 2.9E-11 63.4 7.3 61 216-281 2-69 (70)
52 KOG1930|consensus 98.4 1.1E-06 2.3E-11 83.0 7.6 112 23-142 339-457 (483)
53 cd00990 PDZ_glycyl_aminopeptid 98.3 3.5E-06 7.6E-11 63.0 8.6 63 217-285 3-68 (80)
54 cd00991 PDZ_archaeal_metallopr 98.3 1.8E-06 3.8E-11 64.7 6.2 46 309-356 10-55 (79)
55 cd00989 PDZ_metalloprotease PD 98.3 2.4E-06 5.3E-11 63.6 6.3 46 310-357 13-58 (79)
56 cd00991 PDZ_archaeal_metallopr 98.2 3.9E-06 8.4E-11 62.8 7.0 54 231-285 10-69 (79)
57 KOG3551|consensus 98.2 1.2E-06 2.6E-11 82.0 4.0 65 292-356 93-158 (506)
58 KOG3549|consensus 98.2 1.4E-06 3.1E-11 80.5 4.2 64 293-356 64-128 (505)
59 cd00988 PDZ_CTP_protease PDZ d 98.0 1.7E-05 3.7E-10 59.8 7.2 63 216-284 3-72 (85)
60 cd00989 PDZ_metalloprotease PD 98.0 1.5E-05 3.3E-10 59.2 6.4 54 230-285 11-70 (79)
61 cd00990 PDZ_glycyl_aminopeptid 98.0 1.2E-05 2.6E-10 60.0 5.7 50 297-351 3-52 (80)
62 cd00986 PDZ_LON_protease PDZ d 98.0 1.7E-05 3.7E-10 59.2 5.8 43 310-355 9-51 (79)
63 PLN00049 carboxyl-terminal pro 98.0 1.7E-05 3.8E-10 77.4 7.4 49 310-358 103-151 (389)
64 cd00987 PDZ_serine_protease PD 98.0 2.3E-05 4.9E-10 59.7 6.5 54 231-285 24-83 (90)
65 KOG3553|consensus 98.0 1.1E-05 2.5E-10 61.3 4.6 49 216-265 36-92 (124)
66 KOG1892|consensus 98.0 2.3E-05 5.1E-10 80.8 8.1 78 204-283 934-1018(1629)
67 TIGR00225 prc C-terminal pepti 98.0 1.5E-05 3.2E-10 76.4 6.4 61 295-358 51-111 (334)
68 cd00986 PDZ_LON_protease PDZ d 98.0 2.4E-05 5.3E-10 58.4 6.3 52 232-285 9-66 (79)
69 cd00987 PDZ_serine_protease PD 97.9 2.4E-05 5.3E-10 59.5 6.0 45 310-356 25-69 (90)
70 KOG3651|consensus 97.9 3.5E-05 7.5E-10 70.2 7.0 59 206-266 7-65 (429)
71 COG0793 Prc Periplasmic protea 97.9 2.7E-05 5.9E-10 76.2 6.7 62 295-358 100-161 (406)
72 KOG3938|consensus 97.8 1.6E-05 3.4E-10 71.1 4.2 126 146-282 75-208 (334)
73 KOG3549|consensus 97.8 2.7E-05 5.9E-10 72.1 5.6 78 203-282 54-137 (505)
74 KOG3606|consensus 97.8 4.3E-05 9.4E-10 68.5 6.3 99 200-298 155-267 (358)
75 KOG3551|consensus 97.8 3.5E-05 7.6E-10 72.4 5.7 77 204-282 85-167 (506)
76 KOG3571|consensus 97.8 2.6E-05 5.7E-10 75.5 5.0 64 294-357 260-326 (626)
77 KOG3651|consensus 97.8 4.6E-05 1E-09 69.4 6.1 65 295-359 16-81 (429)
78 KOG0507|consensus 97.7 3.4E-06 7.4E-11 85.2 -2.8 130 27-166 505-639 (854)
79 cd01217 CG12581 CG12581 Phosph 97.7 0.00054 1.2E-08 56.0 10.1 74 30-106 3-80 (158)
80 TIGR01713 typeII_sec_gspC gene 97.6 0.00013 2.8E-09 67.2 6.9 55 231-286 191-251 (259)
81 KOG1892|consensus 97.6 8.8E-05 1.9E-09 76.7 5.9 66 291-356 939-1008(1629)
82 KOG3542|consensus 97.6 3.7E-05 8E-10 76.8 2.8 64 294-357 547-610 (1283)
83 TIGR01713 typeII_sec_gspC gene 97.6 0.00015 3.2E-09 66.8 6.2 58 297-356 179-236 (259)
84 KOG3606|consensus 97.5 0.00016 3.5E-09 65.0 5.7 63 294-356 170-242 (358)
85 PRK11186 carboxy-terminal prot 97.5 0.00014 3.1E-09 75.1 5.9 61 295-358 244-310 (667)
86 KOG0609|consensus 97.5 0.00022 4.8E-09 70.1 6.4 77 202-284 121-205 (542)
87 PRK10139 serine endoprotease; 97.5 0.00021 4.6E-09 71.2 6.4 45 309-355 290-334 (455)
88 TIGR00225 prc C-terminal pepti 97.4 0.00033 7.2E-09 67.1 6.9 63 216-284 52-121 (334)
89 KOG3571|consensus 97.4 0.00067 1.4E-08 66.0 8.4 81 202-282 248-337 (626)
90 cd01210 EPS8 Epidermal growth 97.4 0.0016 3.4E-08 52.7 9.1 118 30-157 3-123 (127)
91 TIGR02037 degP_htrA_DO peripla 97.4 0.00033 7.1E-09 69.5 6.4 55 231-286 362-422 (428)
92 PF04495 GRASP55_65: GRASP55/6 97.4 0.0011 2.5E-08 54.9 8.5 80 202-283 9-100 (138)
93 PRK10898 serine endoprotease; 97.4 0.00044 9.5E-09 66.7 7.0 54 231-285 279-338 (353)
94 PLN00049 carboxyl-terminal pro 97.4 0.00061 1.3E-08 66.7 8.0 69 215-284 85-161 (389)
95 COG0793 Prc Periplasmic protea 97.3 0.00051 1.1E-08 67.3 7.4 65 215-284 100-171 (406)
96 PRK10779 zinc metallopeptidase 97.3 0.00021 4.6E-09 71.2 4.8 44 310-355 127-170 (449)
97 TIGR02038 protease_degS peripl 97.3 0.00034 7.3E-09 67.5 5.9 54 231-285 278-337 (351)
98 KOG3552|consensus 97.3 0.0003 6.6E-09 72.7 5.6 58 295-357 65-122 (1298)
99 TIGR02038 protease_degS peripl 97.3 0.00032 7E-09 67.6 5.6 44 310-355 279-322 (351)
100 PRK10898 serine endoprotease; 97.3 0.00039 8.5E-09 67.1 5.9 45 309-355 279-323 (353)
101 KOG3552|consensus 97.3 0.00027 5.8E-09 73.1 4.8 69 204-284 56-132 (1298)
102 TIGR03279 cyano_FeS_chp putati 97.2 0.00054 1.2E-08 66.8 5.9 117 235-355 2-137 (433)
103 PRK10942 serine endoprotease; 97.2 0.00061 1.3E-08 68.3 6.3 46 309-356 311-356 (473)
104 TIGR00054 RIP metalloprotease 97.2 0.00058 1.3E-08 67.5 6.1 53 232-286 204-262 (420)
105 KOG1421|consensus 97.2 0.0019 4E-08 65.2 9.3 118 232-355 304-446 (955)
106 KOG3605|consensus 97.1 0.0003 6.6E-09 70.2 3.4 67 293-359 655-724 (829)
107 PF04495 GRASP55_65: GRASP55/6 97.1 0.001 2.2E-08 55.2 5.5 64 293-358 24-91 (138)
108 KOG0609|consensus 97.1 0.00088 1.9E-08 66.0 5.6 64 293-358 132-196 (542)
109 KOG3542|consensus 97.0 0.0012 2.6E-08 66.3 6.3 78 202-282 534-617 (1283)
110 PRK11186 carboxy-terminal prot 97.0 0.0016 3.4E-08 67.6 7.0 62 216-283 245-319 (667)
111 KOG4407|consensus 96.9 0.0011 2.5E-08 70.7 5.3 122 206-358 48-192 (1973)
112 KOG4458|consensus 96.9 0.00064 1.4E-08 47.3 2.3 36 14-49 19-54 (78)
113 KOG4448|consensus 96.9 0.0051 1.1E-07 56.8 8.8 127 29-168 61-192 (374)
114 KOG3834|consensus 96.9 0.0041 8.9E-08 59.7 8.5 124 232-358 16-157 (462)
115 KOG1320|consensus 96.9 0.002 4.3E-08 63.5 6.1 122 231-356 287-443 (473)
116 KOG1421|consensus 96.7 0.0059 1.3E-07 61.7 7.8 117 233-357 773-907 (955)
117 TIGR02860 spore_IV_B stage IV 96.6 0.0025 5.5E-08 61.8 4.7 38 319-358 123-160 (402)
118 COG3975 Predicted protease wit 96.6 0.01 2.2E-07 58.7 8.6 55 231-288 462-516 (558)
119 KOG4371|consensus 96.5 0.0072 1.6E-07 63.7 7.6 140 207-354 1151-1316(1332)
120 KOG0606|consensus 96.4 0.0057 1.2E-07 65.1 5.8 65 292-356 634-705 (1205)
121 KOG3938|consensus 96.3 0.0023 5.1E-08 57.5 2.5 65 290-356 132-197 (334)
122 KOG3129|consensus 96.1 0.012 2.6E-07 51.3 5.8 55 231-286 139-201 (231)
123 TIGR02860 spore_IV_B stage IV 96.1 0.015 3.2E-07 56.6 7.0 44 241-286 123-172 (402)
124 KOG3129|consensus 96.1 0.01 2.2E-07 51.8 4.9 45 312-356 142-187 (231)
125 PRK09681 putative type II secr 95.9 0.015 3.3E-07 53.6 5.7 45 242-287 218-268 (276)
126 PF14685 Tricorn_PDZ: Tricorn 95.8 0.019 4E-07 43.8 4.8 47 310-358 13-69 (88)
127 COG0265 DegQ Trypsin-like seri 95.7 0.02 4.3E-07 55.1 5.9 54 231-285 270-329 (347)
128 PF14685 Tricorn_PDZ: Tricorn 95.7 0.056 1.2E-06 41.1 7.0 53 232-285 13-80 (88)
129 COG3975 Predicted protease wit 95.2 0.02 4.4E-07 56.6 4.1 29 311-339 464-492 (558)
130 PF12812 PDZ_1: PDZ-like domai 95.2 0.042 9.1E-07 40.9 4.8 46 310-357 31-76 (78)
131 COG0265 DegQ Trypsin-like seri 95.1 0.036 7.8E-07 53.3 5.4 46 309-356 270-315 (347)
132 KOG3532|consensus 94.6 0.05 1.1E-06 55.2 4.9 47 310-358 399-445 (1051)
133 COG3480 SdrC Predicted secrete 94.2 0.18 4E-06 47.0 7.5 52 231-284 130-187 (342)
134 KOG0507|consensus 94.0 0.019 4.2E-07 58.9 0.8 89 70-170 757-848 (854)
135 KOG3532|consensus 93.8 0.16 3.4E-06 51.8 6.6 51 211-266 382-432 (1051)
136 PRK09681 putative type II secr 93.5 0.11 2.4E-06 48.1 4.7 38 315-354 210-250 (276)
137 KOG1738|consensus 93.2 0.081 1.7E-06 53.4 3.6 63 292-356 210-273 (638)
138 KOG0606|consensus 93.2 0.24 5.3E-06 53.3 7.2 76 206-283 629-715 (1205)
139 COG3031 PulC Type II secretory 91.9 0.31 6.7E-06 43.7 5.1 47 239-286 215-267 (275)
140 KOG1320|consensus 91.3 0.37 8E-06 47.8 5.5 52 232-284 399-456 (473)
141 KOG3557|consensus 89.1 0.47 1E-05 48.2 4.2 118 30-157 47-167 (721)
142 KOG1738|consensus 89.1 0.55 1.2E-05 47.7 4.6 57 213-273 211-272 (638)
143 COG3480 SdrC Predicted secrete 86.6 1 2.3E-05 42.1 4.6 43 310-355 131-173 (342)
144 KOG3834|consensus 86.4 3.4 7.3E-05 40.3 8.0 79 203-282 77-165 (462)
145 COG0750 Predicted membrane-ass 86.3 1.3 2.9E-05 42.8 5.5 45 311-357 131-175 (375)
146 KOG2921|consensus 85.4 1 2.2E-05 43.3 3.9 45 310-356 221-266 (484)
147 PF12812 PDZ_1: PDZ-like domai 82.4 2.5 5.3E-05 31.4 4.2 33 233-266 32-64 (78)
148 PF02174 IRS: PTB domain (IRS- 80.2 24 0.00052 27.3 9.3 74 72-158 23-96 (100)
149 KOG4436|consensus 80.0 0.64 1.4E-05 48.4 0.4 71 82-159 79-152 (948)
150 cd00900 PH-like Pleckstrin hom 72.5 24 0.00052 25.5 7.4 66 69-145 18-85 (99)
151 COG0750 Predicted membrane-ass 70.3 8.4 0.00018 37.2 5.4 32 234-266 132-163 (375)
152 COG3031 PulC Type II secretory 70.2 6 0.00013 35.7 3.9 34 320-355 218-251 (275)
153 cd00824 PTBI IRS-like phosphot 68.7 27 0.00058 27.4 6.8 75 71-158 21-95 (104)
154 PF11874 DUF3394: Domain of un 61.2 13 0.00027 32.4 4.1 28 231-259 122-149 (183)
155 smart00310 PTBI Phosphotyrosin 60.4 54 0.0012 25.4 7.0 72 72-156 21-92 (98)
156 KOG0792|consensus 59.1 5.4 0.00012 43.2 1.7 64 293-356 714-797 (1144)
157 PF11874 DUF3394: Domain of un 48.1 29 0.00062 30.2 4.1 38 297-337 113-150 (183)
158 KOG4407|consensus 48.1 22 0.00049 39.6 4.2 34 312-345 99-132 (1973)
159 KOG4815|consensus 41.3 12 0.00027 34.8 1.0 20 146-165 11-30 (511)
160 cd01203 DOK_PTB Downstream of 40.7 1.4E+02 0.0031 23.4 6.6 73 72-157 22-94 (104)
161 KOG4371|consensus 36.5 34 0.00074 37.3 3.4 57 207-266 1249-1305(1332)
162 KOG2921|consensus 33.2 35 0.00076 33.2 2.6 34 232-266 221-255 (484)
163 COG5233 GRH1 Peripheral Golgi 32.2 27 0.00058 32.9 1.6 31 312-342 66-96 (417)
164 COG3127 Predicted ABC-type tra 26.5 50 0.0011 34.9 2.6 25 318-342 602-627 (829)
165 cd00836 FERM_C FERM_C domain. 24.5 2.2E+02 0.0048 21.2 5.3 38 70-109 14-51 (92)
166 COG5233 GRH1 Peripheral Golgi 21.1 74 0.0016 30.1 2.3 32 234-266 66-97 (417)
167 COG4273 Uncharacterized conser 20.9 1.8E+02 0.004 23.6 4.2 48 234-282 49-99 (135)
No 1
>KOG3605|consensus
Probab=100.00 E-value=6e-70 Score=523.31 Aligned_cols=336 Identities=64% Similarity=0.930 Sum_probs=302.9
Q ss_pred CCCcccCcCCCCcEEEEeeeEEEEe-ccCCChhhHHHHH--HHHHHHh-----------CCCCCCCCCcEEEEEEECCee
Q psy5022 17 EDPVVDTGLGPGTLFRLKFLGSVQV-DEDDPKCCKRRVK--KVMVEEA-----------APEGETQPSTEVDLFISTEKI 82 (359)
Q Consensus 17 ~~~~~~~~l~~gv~f~~kylGs~~V-~~~~~~~~~~~~~--~~~~~~~-----------~~~~~~~~~~~v~l~iS~~gi 82 (359)
+.|..++.|++||.|.++||||++. ++.++...+++++ ..+.+.+ +++++.|++++|+|+||+++|
T Consensus 438 pg~~epe~LidGvif~A~ylgsTqllse~~psk~~rm~Qaqeavsrvk~~~~~~~s~~~Apegesqp~tevdlfist~ri 517 (829)
T KOG3605|consen 438 PGPCEPEDLIDGVIFGARYLGSTQLLSERNPSKAVRMMQAQEAVSRVKGGQKNAKSGKKAPEGESQPMTEVDLFISTQRI 517 (829)
T ss_pred CCCCCHHHhhhhheeecccccccccccCCCCcHHHHHHHHHHHHhhhccccccccccccCCCCCCCcceeeeeeeeccee
Confidence 4467778899999999999999999 8888888887643 2222222 788999999999999999999
Q ss_pred EEEeCCccceeeccccceeeeEEecCCceEEeeecccccccCC-------CCCCCCCCCcceeeEeeccchhhHHhhcch
Q psy5022 83 MVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEAD-------EPPKISRTPKMICHVFESDEAQFIAQSIGQ 155 (359)
Q Consensus 83 ~~~~~~t~~~~~~~~l~~IS~~~~~~~~~~~~~~~~f~~~~~~-------~~~~~~~~~~~~Chvf~s~~a~~i~~~ig~ 155 (359)
++++.++++++|+|+|+.|||++|++++++||++|.+..-... ...+..++++++||||+|++||.|+++|||
T Consensus 518 ~VLnadlqe~mmdhaLrtisyiadIg~lvvlMarrr~~~~s~~~~~~~~~~~~~~~rtpKMICHVFESdeAQfIAQSIGQ 597 (829)
T KOG3605|consen 518 KVLNADLQETMMDHALRTISYIADIGNVVVLMARRRDVRSSSEDCSEDIDPAQKGNRTPKMICHVFESDEAQFIAQSIGQ 597 (829)
T ss_pred EEEechhHHhhhhhhhhhhHHHhhhhHHHHHHHHhhcccccccccCCCCCcccccCCCcceEEEEeccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999998543221 234556889999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCCcccccchhhhhhhcccccccchhhhhhcccccEEEEeeCCCCCccceEEEecCCCCcCCcEEE
Q psy5022 156 AFQVAYMEFLKANGIEDHSFVKEMDYQEVLNSQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVI 235 (359)
Q Consensus 156 af~~ay~~~L~~~gi~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~l~r~~~~~lG~~i~~~~~g~~~~~~~V 235 (359)
||++||++||++||++++++.++++|+++++++++++++|..|+..+++++|.+.|..|+.||+.|++++||+..|.++|
T Consensus 598 AFqVAY~EFLrANGI~~e~l~~q~dYqevlNsQei~gDeLe~FakkE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVVi 677 (829)
T KOG3605|consen 598 AFQVAYMEFLRANGIEPEDLVSQMDYQEVLNSQEIFGDELEHFAKKENQKEVVLEKHKGEILGVVIVESGWGSILPTVVI 677 (829)
T ss_pred HHHHHHHHHHHHcCCCchHhhhhcchhhccchhhhhccHHHHhhhhcccceeeeecccCceeeEEEEecCccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCChhhhcCCCCCCCEEEEECCccHHH--------HHHhhcCCCeEEEEEEeCcceEE--eecc--ccccCcEEec
Q psy5022 236 ANLAPAGAAARCGQLNIGDQIIAVNGVSLVA--------YMEFLKANGIEDHSFVKEMDYQE--VLNS--QEIFGDELQM 303 (359)
Q Consensus 236 ~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~--------~~~~~~~~~~v~l~v~~~~~~~~--~~~~--~~~~G~~~~~ 303 (359)
++..+++||+++|+|..||+|++|||.++.+ .++.+++...|+|+|++-..... +.++ ..-|||++.
T Consensus 678 Anmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~cpPV~~V~I~RPd~kyQLGFSVQ- 756 (829)
T KOG3605|consen 678 ANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVSCPPVTTVLIRRPDLRYQLGFSVQ- 756 (829)
T ss_pred HhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEEEEecCCCceEEEeecccchhhccceee-
Confidence 9999999999999999999999999999888 78888999999999987544332 2233 356799998
Q ss_pred ccccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCC
Q psy5022 304 FAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359 (359)
Q Consensus 304 ~~~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~g~ 359 (359)
..+|+++..||.|+|+|+|+|.||++|||++|...+|+.+|++|.++.||
T Consensus 757 ------NGiICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGE 806 (829)
T KOG3605|consen 757 ------NGIICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGE 806 (829)
T ss_pred ------CcEeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhhh
Confidence 67999999999999999999999999999999999999999999999986
No 2
>cd01208 X11 X11 Phosphotyrosine-binding (PTB) domain. X11 Phosphotyrosine-binding (PTB) domain. The neuronal protein X11 has a PTB domain followed by two PDZ domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether. X11 binds to the cytoplasmic domain of the beta-amyloid precursor protein (beta-APP) and does not require the substrate to be tyrosine-phosphorylated for binding.
Probab=100.00 E-value=1.3e-42 Score=285.13 Aligned_cols=146 Identities=70% Similarity=0.972 Sum_probs=128.0
Q ss_pred CCCCcEEEEeeeEEEEe-ccCCChhhHHH--HHHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccceeecccccee
Q psy5022 25 LGPGTLFRLKFLGSVQV-DEDDPKCCKRR--VKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTI 101 (359)
Q Consensus 25 l~~gv~f~~kylGs~~V-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~I 101 (359)
|++||+|.|+||||++| ++.+++..+|+ +++.+-+.++++++.+++++|+|+||++||+++|++|++++|+|+|++|
T Consensus 1 l~~Gv~f~a~YlG~t~~~~~~~~~~~tR~~~a~Eai~rik~~eG~~~~~t~V~L~IS~~gV~v~~~~tk~im~~h~L~~I 80 (156)
T cd01208 1 LIEGVLFRARYLGSTQLLCEKTPSKNVRMXQAQEAVSRIKAPEGESQPSTEVDLFISTEKIMVLNTDLQEIXMDHALRTI 80 (156)
T ss_pred CcCceEEEEEeeceeeeeecCCCChhhhHHHHHHHHHHHhccccCCCCCcEEEEEEEeCeEEEEecCccceeccCcccce
Confidence 68999999999999997 77889998885 3445555567899999999999999999999999999999999999999
Q ss_pred eeEEecCCceEEeeecccccccCC-------CCCCCCCCCcceeeEeeccchhhHHhhcchhhHHHHHHHHHhcCC
Q psy5022 102 SYIADIGDLVVLMARRRFVSQEAD-------EPPKISRTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGI 170 (359)
Q Consensus 102 S~~~~~~~~~~~~~~~~f~~~~~~-------~~~~~~~~~~~~Chvf~s~~a~~i~~~ig~af~~ay~~~L~~~gi 170 (359)
|||||++++|+||++|.+.+.... ...+++.+.+++||||+|++|++|+++|||||++||++||++||+
T Consensus 81 Sy~AD~~d~~v~mAkr~~~~~~~~~~~~~~~~~~~~~~~~k~~ChVFes~~Aq~Ia~TIGQAF~lAY~~fL~~nGi 156 (156)
T cd01208 81 SYIADIGDLVVLMARRRIPRSSSQENSEASHPSQDGKRTPKXICHVFESDEAQFIAQSIGQAFQVAYQEFLRANGI 156 (156)
T ss_pred EEEecCCCeEEEEEeccccccccccccccCCcccccccccceeEEEEecCcHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999998643321 123345667899999999999999999999999999999999985
No 3
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=100.00 E-value=5.9e-35 Score=243.98 Aligned_cols=135 Identities=31% Similarity=0.435 Sum_probs=114.7
Q ss_pred cCcCCCC-cEEEEeeeEEEEeccCCChhhHHH-HHHHHHHH--h-CCCCCCCCCcEEEEEEECCeeEEEeCCccceeecc
Q psy5022 22 DTGLGPG-TLFRLKFLGSVQVDEDDPKCCKRR-VKKVMVEE--A-APEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDH 96 (359)
Q Consensus 22 ~~~l~~g-v~f~~kylGs~~V~~~~~~~~~~~-~~~~~~~~--~-~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~ 96 (359)
+|.|++| |.|.||||||++|.+++|+.+++. ++++.... + ...++.++.++|.|+||++||+++|.+|++++++|
T Consensus 1 p~~l~~g~v~f~vkyLG~~eV~~~~g~~v~~eAi~ki~~a~~~k~~~~~~~~k~~~V~L~IS~~GI~v~d~~t~~~~~~~ 80 (142)
T cd01273 1 PEYLINGHVEYVAKFLGCVEVDQPKGSEVVREAIRKLRFARDLKKSEQTRTAKLQKVEIRISIDGVIIAEPKTKAPMHTF 80 (142)
T ss_pred ChhHccCceEEEEEEeeeEEecCCCCchHHHHHHHHHHHHHhhhhccccccccCcEEEEEEECCeEEEEEcCCCcEEEEc
Confidence 4679999 899999999999999999999764 45543221 1 12222356789999999999999999999999999
Q ss_pred ccceeeeEEecCCceEEeeecccccccCCCCCCCCCC-CcceeeEeeccc-hhhHHhhcchhhHHHHHHHHH
Q psy5022 97 ALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRT-PKMICHVFESDE-AQFIAQSIGQAFQVAYMEFLK 166 (359)
Q Consensus 97 ~l~~IS~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~Chvf~s~~-a~~i~~~ig~af~~ay~~~L~ 166 (359)
+|++|||||+|++ ++|.|+||+ +++.. ++++||||.|++ |++|+.+|||||++|||+||+
T Consensus 81 ~i~~ISfca~d~~-----~~r~FayIa-----k~~~~~~~~~ChvF~s~~~A~~I~~tigqAF~~ay~~fl~ 142 (142)
T cd01273 81 PLGRISFCADDKD-----DKRMFSFIA-----KAEGASGKHSCFVFTSEKLAEDITLTIGQAFDLAYRKFLD 142 (142)
T ss_pred CcceEEEEecCCC-----CCeEEEEEe-----cCCCCCCcEEEEEEeccchHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999988 899999995 45544 789999999988 999999999999999999984
No 4
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.98 E-value=2.2e-32 Score=222.96 Aligned_cols=122 Identities=22% Similarity=0.334 Sum_probs=104.5
Q ss_pred cEEEEeeeEEEEeccCCChhhHHH-HHHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccceeeccccceeeeEEec
Q psy5022 29 TLFRLKFLGSVQVDEDDPKCCKRR-VKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADI 107 (359)
Q Consensus 29 v~f~~kylGs~~V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~~~~ 107 (359)
|.|.+|||||++|.+++|+.++++ ++++... .+..++.++|.|+||++||+++|.+|++++++|+|+|||||++|
T Consensus 2 v~f~akyLGs~eV~~~~G~~~~~~Am~kik~~----~~~~~k~~~V~L~IS~~Gv~v~d~~tk~~i~~~~i~~ISf~~~D 77 (127)
T cd01274 2 VVYRAHYLGSLEIGELEGTDSTHAAMTKIKES----IIDWETIPRVTLDLTCNGVKFIDETFKTLIDGHGIYNIRCVCQD 77 (127)
T ss_pred cEEEEEccceEEccCCCCcHHHHHHHHHHHHh----hhccCCCCEEEEEEeCCeEEEEECCCCeEEEEeeeeEEEEEecC
Confidence 689999999999999999999764 4444322 22345678999999999999999999999999999999999988
Q ss_pred CCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc---hhhHHhhcchhhHHHHHHHH
Q psy5022 108 GDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE---AQFIAQSIGQAFQVAYMEFL 165 (359)
Q Consensus 108 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~---a~~i~~~ig~af~~ay~~~L 165 (359)
.+ +.+.|+||+ +++. ++++||||.|.+ |++|+.+|||||+++||-.|
T Consensus 78 ~~-----d~~~FayIa-----kd~~-~~~~CHvF~~~~~~~A~~I~~tigqAF~~ay~~~~ 127 (127)
T cd01274 78 RE-----DLNFFAYIT-----KDTE-NRHYCHVFCVLTSGLAAEIITTLGQAFEVAYQLAL 127 (127)
T ss_pred CC-----CceEEEEEe-----eCCC-CCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 77 789999994 5566 799999999854 99999999999999998653
No 5
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.98 E-value=4.7e-32 Score=221.91 Aligned_cols=126 Identities=21% Similarity=0.375 Sum_probs=110.6
Q ss_pred ccCcCCCC-cEEEEeeeEEEEeccCCChhhHHH-HHHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccceeecccc
Q psy5022 21 VDTGLGPG-TLFRLKFLGSVQVDEDDPKCCKRR-VKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHAL 98 (359)
Q Consensus 21 ~~~~l~~g-v~f~~kylGs~~V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l 98 (359)
.++.|.+| +.|.+|||||+||.+++|+.+++. ++++.+.. .+.++|.|.||++||+++|.+|++++++|+|
T Consensus 5 ~~~~~~~g~~~f~vKyLG~veV~~~rG~~v~~~A~~klk~~~-------~k~~kv~L~VS~~Gi~vvd~~Tk~~i~~~~i 77 (138)
T cd01268 5 DEEAVRTGTCSFPVKYLGHVEVDESRGMQVCEDALKRLKASR-------RKPVKAVLWVSGDGLRVVDEKTKGLIVDQTI 77 (138)
T ss_pred CHHHHhcCceeEEeEecceEEccCcCCChHHHHHHHHHHhhc-------cCCCEEEEEEecCcEEEEecCCCcEEEEEeE
Confidence 35668888 799999999999999999999754 45543321 2356899999999999999999999999999
Q ss_pred ceeeeEEecCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc--hhhHHhhcchhhHHHHHH
Q psy5022 99 RTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE--AQFIAQSIGQAFQVAYME 163 (359)
Q Consensus 99 ~~IS~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~--a~~i~~~ig~af~~ay~~ 163 (359)
++|||||+|++ ++|.|+|| ++++.++++.||||.|.+ |+.|+.+||+||+++|+.
T Consensus 78 ~~ISfca~D~~-----d~r~FayI-----akd~~~~r~~CHvF~~~k~sa~~i~~avG~AF~~c~~~ 134 (138)
T cd01268 78 EKVSFCAPDRN-----FDRGFSYI-----CRDGTTRRWMCHGFLAVKDTGERLSHAVGCAFAACLER 134 (138)
T ss_pred EEEEEEecCCC-----CCcEEEEE-----ecCCCcccEEEEEEEeeccchhHHHHHHHHHHHHHHHH
Confidence 99999999988 89999999 677888999999999975 999999999999999975
No 6
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.97 E-value=1.3e-31 Score=221.89 Aligned_cols=127 Identities=31% Similarity=0.421 Sum_probs=107.7
Q ss_pred cEEEEeeeEEEEeccCCChhhHHHH-HHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccceeeccccceeeeEEec
Q psy5022 29 TLFRLKFLGSVQVDEDDPKCCKRRV-KKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADI 107 (359)
Q Consensus 29 v~f~~kylGs~~V~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~~~~ 107 (359)
|.|.||||||++|++++|+.+++.+ +++..+...+.++.++.++|.|.||.+||+++|.+|++++++|+|++||||+++
T Consensus 2 v~f~vkyLGs~~V~~~~g~~~~~~Ai~~l~~~~~~~~~~~~k~~~V~L~IS~~gi~i~d~~t~~~l~~~~i~~ISfc~~d 81 (132)
T cd01267 2 VVYRAKFLGSLEIGKLKGTEVAREAIRKLKFSRILKTAEWEKIPKVELDISIKGVKIIDPKTKTVLHGHPLYNISCCAQD 81 (132)
T ss_pred cEEEEEEEEEEEecCCCChHHHHHHHHHHHhhhhcchhccCCCCeEEEEEEcCcEEEEeCCCCcEEEEcccceEEEEecC
Confidence 6899999999999999999887644 444333222223334578999999999999999999999999999999999988
Q ss_pred CCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc---hhhHHhhcchhhHHHHHHHH
Q psy5022 108 GDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE---AQFIAQSIGQAFQVAYMEFL 165 (359)
Q Consensus 108 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~---a~~i~~~ig~af~~ay~~~L 165 (359)
++ +++.|+||+ +++..++++||||.|++ |++|+.+|||||++||++||
T Consensus 82 ~~-----~~~~FafIa-----~~~~~~~~~ChvF~~~~~~~A~~I~~tig~AF~~ay~~~~ 132 (132)
T cd01267 82 KE-----DLRFFAFIA-----KDTETNKHYCHVFCSEKLGLAEEIILTIGQAFELAYRLAL 132 (132)
T ss_pred CC-----CCeEEEEEE-----ecCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 87 789999994 55666789999999976 89999999999999999986
No 7
>cd01270 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 contains an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domains of both SHC and IRS-1, for example, bind to a NPXpY sequence. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=99.97 E-value=8.8e-32 Score=219.34 Aligned_cols=123 Identities=22% Similarity=0.378 Sum_probs=103.8
Q ss_pred CCcEEEEeeeEEEEeccCCChhhHH-HHHHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCC------------cccee
Q psy5022 27 PGTLFRLKFLGSVQVDEDDPKCCKR-RVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTD------------LKEIM 93 (359)
Q Consensus 27 ~gv~f~~kylGs~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~------------t~~~~ 93 (359)
.||+|.+|||||+||.++++..++. +++++.. +.+..+.+ .++|.|.||++||+++|.. |++++
T Consensus 1 ~GitF~vKYlG~~eV~~~~g~~~~~~A~rrir~-~~ka~~~K--k~kV~l~VS~~Gv~v~d~k~~~~~~~~~~~~tk~li 77 (140)
T cd01270 1 HGITFEAKYVGSEEVPRPNTRAEIVAAMRRIRY-EFKAQNIK--KRKVTIHVSVDGVKVVLKKKKRKKKNWTWDESKILV 77 (140)
T ss_pred CceEEEEEEcceEEecCCCCcCHHHHHHHHHHH-HHHHhCCC--ceeEEEEEecCcEEEEecccccccccccccCcccEE
Confidence 4899999999999999999887754 4454442 22223333 4589999999999999964 67899
Q ss_pred eccccceeeeEEecCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc---hhhHHhhcchhhHHHHH
Q psy5022 94 MDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE---AQFIAQSIGQAFQVAYM 162 (359)
Q Consensus 94 ~~~~l~~IS~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~---a~~i~~~ig~af~~ay~ 162 (359)
++|+|+||||||+|++ +.+.|+|| ++++..++++||||.|.+ |++|+.||||||++||+
T Consensus 78 ~~~~i~rISf~a~D~~-----~~k~FayI-----akd~~~~~~~ChvF~~~k~~~A~~I~~TIGqAFev~~~ 139 (140)
T cd01270 78 MNHPIYRIFYVSHDSQ-----DLKIFSYI-----ARDGASNTFKCNVFKSHKKSQAMRIVRTVGQAFEVCHK 139 (140)
T ss_pred EecCeeEEEEeecCCC-----CCcEEEEE-----ecCCCCCceEEEEEEEcChhhHHHHHHHHHHHHHHHhc
Confidence 9999999999999988 89999999 566778899999999986 99999999999999995
No 8
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JIP is a mitogen-activated protein kinase scaffold protein. JIP consists of a C-terminal SH3 domain, followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.97 E-value=9.5e-31 Score=218.02 Aligned_cols=128 Identities=26% Similarity=0.334 Sum_probs=107.8
Q ss_pred EEEEeeeEEEEeccCCChhhHH-HHHHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccce-----eecc-ccceee
Q psy5022 30 LFRLKFLGSVQVDEDDPKCCKR-RVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEI-----MMDH-ALRTIS 102 (359)
Q Consensus 30 ~f~~kylGs~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~-----~~~~-~l~~IS 102 (359)
+|.||||||+||.+++|+.++. ++++++...+.... ..+.++|.|.||.+||+++|..|++. ++.| +|+|||
T Consensus 4 ~f~vkyLGsveV~~~kG~~v~~~A~rki~~~~k~~~~-~~~~~~v~L~VS~~Girl~D~~t~~~~~~~~~~~f~~l~nIS 82 (148)
T cd01212 4 RFLLGYLGSVEVLAHKGNGVLCQAMRKIVGEYKNSEE-SPTPQTCILEISDRGLRMVDRSGPNKDKKPCIDFFYSLKNIS 82 (148)
T ss_pred eEEeEecceEEecCCCCcHHHHHHHHHHHHHHHhhcc-CCCCcEEEEEEecCcEEEEecCCCcccccchhhccccccceE
Confidence 6999999999999999999964 56666654433322 33457999999999999999999853 3334 599999
Q ss_pred eEEecCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc-hhhHHhhcchhhHHHHHHHHHhc
Q psy5022 103 YIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE-AQFIAQSIGQAFQVAYMEFLKAN 168 (359)
Q Consensus 103 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~-a~~i~~~ig~af~~ay~~~L~~~ 168 (359)
||++|++ ++|.|+|| ++++..+++.||||.|.+ |++|+.+||+||++|||+||+..
T Consensus 83 FCa~d~~-----~~r~F~FI-----ak~~~~~~~~CHVF~s~~~~~~I~~aIG~AF~~~y~~~~~~~ 139 (148)
T cd01212 83 FCGFHPR-----DHRYFGFI-----TKHPLLQRFACHVFKSSESTRPVAEAVGRAFQRFYQEFIATA 139 (148)
T ss_pred EEEEcCC-----CCcEEEEE-----eccCCCCceEEEEEEeCCcchHHHHHHHHHHHHHHHHHHhhc
Confidence 9999988 89999999 566777899999999988 99999999999999999999865
No 9
>cd01209 SHC SHC phosphotyrosine-binding (PTB) domain. SHC phosphotyrosine-binding (PTB) domain. SHC is a substrate for receptor tyrosine kinases, which can interact with phosphoproteins at NPXY motifs. SHC contains an PTB domain followed by an SH2 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.96 E-value=6.5e-30 Score=211.35 Aligned_cols=129 Identities=22% Similarity=0.415 Sum_probs=95.9
Q ss_pred cCCCCcEEEEeeeEEEEec--cCCChhh-----HHHHHHHHHHHh----CCC-----------CC-CCCCcEEEEEEECC
Q psy5022 24 GLGPGTLFRLKFLGSVQVD--EDDPKCC-----KRRVKKVMVEEA----APE-----------GE-TQPSTEVDLFISTE 80 (359)
Q Consensus 24 ~l~~gv~f~~kylGs~~V~--~~~~~~~-----~~~~~~~~~~~~----~~~-----------~~-~~~~~~v~l~iS~~ 80 (359)
.+-.||+|.||||||+||. ++..+.. ++++...++ ++ ++. .+ ..+.++|.|+||.+
T Consensus 6 l~~~GV~y~vrYlG~~eV~~Smr~~~~~~Rtqv~rEaI~rV~-ea~~~~~~~~~~~~~~~~~~~~~~~~~~~V~l~IS~~ 84 (160)
T cd01209 6 VMGPGVSYLVRYMGCVEVLQSMRALDFETRTQVTRECISLVC-EAVGGAKAATERNLNSILGRSNLKFAGMPITINVSSS 84 (160)
T ss_pred hhcCCcEEEEEEeeEEeehhhcccCCcchhHHHHHHHHHHHH-hccccccccccccccccccCccccccCceEEEEEEee
Confidence 4567899999999999994 4444433 333322221 12 111 00 12468899999999
Q ss_pred eeEEEeCCccceeeccccceeeeEEe-cCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc--hhhHHhhcchhh
Q psy5022 81 KIMVLNTDLKEIMMDHALRTISYIAD-IGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE--AQFIAQSIGQAF 157 (359)
Q Consensus 81 gi~~~~~~t~~~~~~~~l~~IS~~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~--a~~i~~~ig~af 157 (359)
||++++.+|+++|++|+|++|||||+ +++ ..+.|+||++ ++. ++++||||+|++ |++|+.||||||
T Consensus 85 ~v~~~~~~t~~ii~~H~l~~ISfaa~gd~d-----~~~~~ayIAK-----d~~-~~r~ChVf~~~~~lAq~Ii~TIGQAF 153 (160)
T cd01209 85 SLNLMAQDCKQIIANHHMQSISFASGGDPD-----TAEYVAYIAK-----NPD-NQRACHVLECPEGLAQDLISTIGQAF 153 (160)
T ss_pred EEEEeccCchhHHhcCCCcceEEEeCCCCC-----cceeEEEEEc-----CCC-CCceeEEEEcCCchHHHHHHHHHHHH
Confidence 99999999999999999999999994 444 3456677743 232 568999999977 999999999999
Q ss_pred HHHHHHH
Q psy5022 158 QVAYMEF 164 (359)
Q Consensus 158 ~~ay~~~ 164 (359)
+++|++|
T Consensus 154 ~lay~~~ 160 (160)
T cd01209 154 ELRFKQY 160 (160)
T ss_pred HHHhhcC
Confidence 9999874
No 10
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=99.96 E-value=5.8e-29 Score=202.30 Aligned_cols=124 Identities=22% Similarity=0.283 Sum_probs=103.6
Q ss_pred CCCcEEEEeeeEEEEeccCCChhhHHH-HHHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccceeeccccceeeeE
Q psy5022 26 GPGTLFRLKFLGSVQVDEDDPKCCKRR-VKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYI 104 (359)
Q Consensus 26 ~~gv~f~~kylGs~~V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~ 104 (359)
.+||.|.+||||++||++++|+.+++. ++++... ++..+. +.++|.|.||++||+++|..|+.++++|+|++||||
T Consensus 10 g~gv~f~aKylG~~eV~e~RG~~v~~~Ai~klk~~-~k~~~~--kk~kV~L~IS~dGi~v~D~~T~~ll~~~~i~rISfc 86 (139)
T cd01215 10 GNGVSYKAKLIGIQEVDKARGDAMCAEAMRKAKSI-IKGAGA--HKTRITLQINIDGIKVLDEKTGAVLHHHPVHRISFI 86 (139)
T ss_pred CCcEEEEEEecccEecccCCchHHHHHHHHHHHHH-hhhhcc--ccceEEEEEccCCEEEEcCCCCcEEEeeceeeEEEE
Confidence 488999999999999999999999764 4554433 222232 246899999999999999999999999999999999
Q ss_pred EecCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc-hhhHHhhcchhhHHHHHH
Q psy5022 105 ADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE-AQFIAQSIGQAFQVAYME 163 (359)
Q Consensus 105 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~-a~~i~~~ig~af~~ay~~ 163 (359)
|+|.+ ++|.|+||++ +++ ..+.|++|.+.+ |++|+++|||||+++|+.
T Consensus 87 a~D~~-----d~r~FsyI~~-----~~~-~~H~f~~~k~~k~A~~i~lti~~aF~va~e~ 135 (139)
T cd01215 87 ARDST-----DARAFGYVYG-----EPG-GKHRFYGIKTAQAADQVVLAIRDLFQVVFEL 135 (139)
T ss_pred ecCCC-----CCeEEEEEEE-----cCC-CcEEEEEEEhHHcchhhhhhHHHHHHHHHHH
Confidence 99998 9999999964 333 346677777877 999999999999999964
No 11
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.95 E-value=2.7e-27 Score=191.97 Aligned_cols=119 Identities=19% Similarity=0.362 Sum_probs=102.7
Q ss_pred EEEEeeeEEEEeccCCChhhHHH-HHHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccceeeccccceeeeEEecC
Q psy5022 30 LFRLKFLGSVQVDEDDPKCCKRR-VKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIG 108 (359)
Q Consensus 30 ~f~~kylGs~~V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~~~~~ 108 (359)
.|.|+||||+||.+++|..++.. ++++....+ ...+++|.|.||.+||+++|++|++++++++|++||||+.+.
T Consensus 3 ~F~VkyLG~~eV~~~~g~~vv~~ai~~L~~~~~-----~~~~~~v~l~Vs~~~l~l~d~~t~~~l~~~~i~~Isf~~~gk 77 (123)
T cd01216 3 VFAVRSLGWVEVAEEDGSEALNKAIDDLSSCSN-----WEDWKDLNMDLAPSTLSLIDPDNLTVLHECRVRYLSFWGVGR 77 (123)
T ss_pred EEEEEeeeeEEECCCCCHHHHHHHHHHHHhccc-----cccCeEEEEEEecCcEEEEcCCCCeEEEEEEeeEEEEEEcCC
Confidence 59999999999999999998654 444443321 344779999999999999999999999999999999999988
Q ss_pred CceEEeeecccccccCCCCCCCCCCCcceeeEeeccc-hhhHHhhcchhhHHHHHHHH
Q psy5022 109 DLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE-AQFIAQSIGQAFQVAYMEFL 165 (359)
Q Consensus 109 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~-a~~i~~~ig~af~~ay~~~L 165 (359)
+ + |.|+||.+ +++ +++.||||+|++ |++|+.+|++||+++||+.|
T Consensus 78 ~-----~-r~FafI~~-----~~~-~~~~CHVF~c~~~a~~i~~tv~~ac~l~y~k~~ 123 (123)
T cd01216 78 D-----V-RDFAFIMR-----TER-RRFMCHVFRCEPNAGALATTVEAACKLRYQKCL 123 (123)
T ss_pred C-----C-cEEEEEEE-----cCC-CeEEEEEEEcCCCHHHHHHHHHHHHHHHhhccC
Confidence 7 5 89999964 333 889999999999 99999999999999999864
No 12
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=99.93 E-value=4e-26 Score=191.02 Aligned_cols=127 Identities=35% Similarity=0.612 Sum_probs=102.1
Q ss_pred EEEeeeEEEEeccC-C-----ChhhHH-HHHHHHHH----HhCCCCCCCCCcEEEEEEECCeeEEEeCCccceeeccccc
Q psy5022 31 FRLKFLGSVQVDED-D-----PKCCKR-RVKKVMVE----EAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALR 99 (359)
Q Consensus 31 f~~kylGs~~V~~~-~-----~~~~~~-~~~~~~~~----~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~ 99 (359)
|.||||||++|..+ . +...++ ++.++... .........+.++|.|.||.+||+++|.+|++++++|+|+
T Consensus 1 F~vkYLGs~~V~~~~~~~~~~g~~~v~~ai~~~~~~~~~~~~~~~~~~~~~~~V~l~vs~~gI~v~~~~t~~~l~~~~i~ 80 (140)
T PF00640_consen 1 FEVKYLGSVEVSSSRRGDKSRGSDVVREAIQRLKAEKIAKSKKSKSNKKKPQKVTLNVSSDGIKVIDPDTGEVLMSHPIR 80 (140)
T ss_dssp EEEEEEEEEEESSSSSTCHHHHHHHHHHHHHHHHHHCCCSHHHHHTTTSTSEEEEEEEETTEEEEEETTTTCEEEEEEGG
T ss_pred CEEEEEEEEEECCccCCCcchhHHHHHHHHHHHHhhhhhhhhccccccccCeEEEEEEcCCeEEEecCccccccccCCcc
Confidence 89999999999776 2 333344 33333322 0011223445789999999999999999999999999999
Q ss_pred eeeeEEe-cCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc-hhhHHhhcchhhHHHHHHHHHh
Q psy5022 100 TISYIAD-IGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE-AQFIAQSIGQAFQVAYMEFLKA 167 (359)
Q Consensus 100 ~IS~~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~-a~~i~~~ig~af~~ay~~~L~~ 167 (359)
+||||+. +.+ +++.|+||. ++.+.+++.||||.|.+ |++|+.+||+||++||++++++
T Consensus 81 ~Is~~~~~d~~-----~~~~Fafi~-----~~~~~~~~~CHVF~~~~~A~~i~~~i~~aF~~a~~~~~~~ 140 (140)
T PF00640_consen 81 RISFCAVGDPD-----DKRVFAFIA-----RDPRSSRFYCHVFKCEDQAQEICQAIGQAFELAYQEFLRA 140 (140)
T ss_dssp GEEEEEESSTT-----ETTEEEEEE-----EETSSSCEEEEEEEESSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCC-----cceEEEEEe-----ccCCCCccccEeeeHhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999998 877 789999984 45667789999999998 9999999999999999999874
No 13
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=99.93 E-value=2.5e-25 Score=184.90 Aligned_cols=130 Identities=33% Similarity=0.463 Sum_probs=108.1
Q ss_pred CCcEEEEeeeEEEEeccCCChhhHHHHHHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccceeeccccceeeeEEe
Q psy5022 27 PGTLFRLKFLGSVQVDEDDPKCCKRRVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIAD 106 (359)
Q Consensus 27 ~gv~f~~kylGs~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~~~ 106 (359)
.|+.|.|+||||++|.+.+|...++.+.+.+..... ....++++|.|.||.+||+++|.+++.++++|+|++||||+.
T Consensus 2 ~~~~f~v~YLGs~~v~~~~g~~~~~~ai~~l~~~~~--~~~~~~~~v~l~vs~~gv~v~~~~~~~~l~~~~l~~Isf~~~ 79 (134)
T smart00462 2 SGVSFRVKYLGSVEVPEARGLQVVQEAIRKLRAAQG--SEKKEPQKVILSISSRGVKLIDEDTKAVLHEHPLRRISFCAV 79 (134)
T ss_pred CceEEEEEEEEEEEecCCCCcHHHHHHHHHHHHhhh--hccCCCCEEEEEEECCcEEEEECCCCeEEEEccccceEEEec
Confidence 578999999999999999998887654333322111 123456799999999999999999999999999999999998
Q ss_pred cCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc-hhhHHhhcchhhHHHHHHHHHhc
Q psy5022 107 IGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE-AQFIAQSIGQAFQVAYMEFLKAN 168 (359)
Q Consensus 107 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~-a~~i~~~ig~af~~ay~~~L~~~ 168 (359)
+.+ +.+.|+||+ ++.....+.||||+|++ |++|+.+|++||+++|+++++.+
T Consensus 80 ~~~-----~~~~F~fI~-----~~~~~~~~~CHvF~c~~~a~~i~~~i~~aF~~a~~~~~~~~ 132 (134)
T smart00462 80 GPD-----DLDVFGYIA-----RDPGSSRFACHVFRCEKAAEDIALAIGQAFQLAYELKLKAR 132 (134)
T ss_pred CCC-----CCcEEEEEe-----eCCCCCeEEEEEEEcCchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 766 678999995 44555679999999988 88999999999999999999754
No 14
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.93 E-value=9.5e-26 Score=178.29 Aligned_cols=119 Identities=18% Similarity=0.340 Sum_probs=103.3
Q ss_pred EEEEeeeEEEEeccCCChhhHH-HHHHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCc-cceeeccccceeeeEEec
Q psy5022 30 LFRLKFLGSVQVDEDDPKCCKR-RVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDL-KEIMMDHALRTISYIADI 107 (359)
Q Consensus 30 ~f~~kylGs~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t-~~~~~~~~l~~IS~~~~~ 107 (359)
.|.++|||+++|+.+.|.++.. ++++++.. ++...|.+|.++|++.+|.+++.++ .+++.+++++.||||+.+
T Consensus 3 ~f~~~yLG~~~V~~p~Gmdvln~AI~~l~~~-----~~~~~w~~V~vsvaps~v~v~~~~~~~~~l~ecrVr~lSF~Gvg 77 (124)
T cd01271 3 VFRVQYLGMLPVDKPTGMEILNSAIDNLMSS-----SNKEDWLSVNVNVAPSTITVISEKNEEEVLVECRVRYLSFLGIG 77 (124)
T ss_pred EEEEEEeccEeecCCccHHHHHHHHHHHHhc-----CCcccCceEEEEeCCceEEEEccCccceeeeeeeEEEeccccCC
Confidence 4999999999999999999965 44554432 3445699999999999999999997 689999999999999997
Q ss_pred CCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc-hhhHHhhcchhhHHHHHHHH
Q psy5022 108 GDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE-AQFIAQSIGQAFQVAYMEFL 165 (359)
Q Consensus 108 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~-a~~i~~~ig~af~~ay~~~L 165 (359)
+| .+.|+||. +..+++|.||||+|++ |.+++.+|++||+++||++|
T Consensus 78 Kd------~k~fafI~------~~~~~~f~ChVF~ce~~A~~ls~av~aAc~lrYQkcl 124 (124)
T cd01271 78 KD------VHTCAFIM------DTGNQRFECHVFWCEPNAGNVSKAVEAACKLRYQKCL 124 (124)
T ss_pred CC------ccEEEEEE------ecCCCcEEEEEEEecCChHHHHHHHHHHHHHHHhhcC
Confidence 75 77999995 3457889999999999 99999999999999999976
No 15
>KOG3536|consensus
Probab=99.92 E-value=3.5e-26 Score=204.96 Aligned_cols=147 Identities=27% Similarity=0.382 Sum_probs=122.3
Q ss_pred CCCCCCc-ccCcCCCC-cEEEEeeeEEEEeccCCChhhHH-HHHHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCcc
Q psy5022 14 ALPEDPV-VDTGLGPG-TLFRLKFLGSVQVDEDDPKCCKR-RVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLK 90 (359)
Q Consensus 14 ~~~~~~~-~~~~l~~g-v~f~~kylGs~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~ 90 (359)
+.++.+. -+|.|++| |.|.+||||+++|.+++|+++++ ++++...+..-.+.+.++.++|+|.||.+||.|.+..|+
T Consensus 30 ~~~~~w~~t~e~l~~g~v~y~~kflg~~ev~qpkG~~vv~~a~r~~rr~~~~kkseg~k~~kvE~~Isi~gviI~~~~T~ 109 (321)
T KOG3536|consen 30 KLPENWTHTRETLIEGHVPYSAKFLGMTEVEQPKGTDVVREAIRAIRRTNPFKKSEGEKLQKVELSISIQGVIIRDLGTM 109 (321)
T ss_pred CCccccccchhhhhcccHHHHHHhcccccccCCCccHHHHHHHHhhhhcccccccccccccceeeeeccceeEEeecccc
Confidence 3444333 36889999 99999999999999999998875 445544333322222356789999999999999999999
Q ss_pred ceeeccccceeeeEEecCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc-hhhHHhhcchhhHHHHHHHHHhcC
Q psy5022 91 EIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE-AQFIAQSIGQAFQVAYMEFLKANG 169 (359)
Q Consensus 91 ~~~~~~~l~~IS~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~-a~~i~~~ig~af~~ay~~~L~~~g 169 (359)
+++++++|+|||||+|++. ++|.|.||++. ...+.+.||+|.|.+ |+.|++++||||.+||..|+.+++
T Consensus 110 ~v~~~~~l~rIs~caddk~-----~kR~fsfIar~-----~es~~hlc~~f~s~Kla~~iTltigqaFdLay~~~~~s~~ 179 (321)
T KOG3536|consen 110 AVKHNFPLYRISYCADDKL-----AKRAFSFIARM-----TESQSHLCVAFDSLKLADDITLTIGQAFDLAYVKFLDSHE 179 (321)
T ss_pred cceecCChhhhhHhHhHHH-----HHHHHHHHHHh-----cccCCceEEEeehhhhcchHHHHHHhhcchhhHHHHhhcc
Confidence 9999999999999999997 99999999654 444559999999999 999999999999999999998885
Q ss_pred C
Q psy5022 170 I 170 (359)
Q Consensus 170 i 170 (359)
.
T Consensus 180 e 180 (321)
T KOG3536|consen 180 E 180 (321)
T ss_pred h
Confidence 4
No 16
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=99.91 E-value=1.3e-23 Score=171.74 Aligned_cols=122 Identities=31% Similarity=0.498 Sum_probs=100.6
Q ss_pred CcEEEEeeeEEEEeccCCChhhHHHHHHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccceeeccccceeeeEEec
Q psy5022 28 GTLFRLKFLGSVQVDEDDPKCCKRRVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADI 107 (359)
Q Consensus 28 gv~f~~kylGs~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~~~~ 107 (359)
|+.|.|+|||+++|++.++...++.+...+....+. ...+.++|.|.||.+||+++|.++++++++|+|++||||+.+
T Consensus 1 ~~~f~v~ylG~~~v~~~~g~~~~~~ai~~l~~~~~~--~~~~~~~v~l~vs~~gv~l~d~~~~~~l~~~~l~~Is~~~~~ 78 (123)
T cd00934 1 GISFNVKYLGSVEVPEPRGSQVVRDAIRKLKAASKQ--GGEKGQKVILSVSSDGVKLIDPKTKEVLASHPIRRISFCAAD 78 (123)
T ss_pred CcEEEEEEEEEEEecCCCCchHHHHHHHHHHHhhhh--cccCCCEEEEEEEcCcEEEEeCCCCcEEEeeccceEEEEECC
Confidence 578999999999999988888876543333222211 123467999999999999999999999999999999999977
Q ss_pred CCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc-hhhHHhhcchhhHHHH
Q psy5022 108 GDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE-AQFIAQSIGQAFQVAY 161 (359)
Q Consensus 108 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~-a~~i~~~ig~af~~ay 161 (359)
.+ +++.|+|+. +++....+.||||+|++ |+.|+.+|++||+++|
T Consensus 79 ~~-----~~~~F~~i~-----~~~~~~~~~CHvF~c~~~a~~i~~~l~~af~~~~ 123 (123)
T cd00934 79 PD-----DLRIFAFIA-----REPGSSRFECHVFKCEKVAEPIALTLGQAFQVAY 123 (123)
T ss_pred CC-----CCcEEEEEE-----EcCCCCcEEEEEEEeCchHHHHHHHHHHHHHHhC
Confidence 76 688999995 34455789999999988 8999999999999987
No 17
>cd01214 CG8312 CG8312 Phosphotyrosine-binding (PTB) domain. CG8312 Phosphotyrosine-binding (PTB) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.90 E-value=2.6e-23 Score=167.47 Aligned_cols=125 Identities=18% Similarity=0.237 Sum_probs=100.4
Q ss_pred EEEEeeeEEEEeccCCChhhHHHH-HHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccceeeccccceeeeEEecC
Q psy5022 30 LFRLKFLGSVQVDEDDPKCCKRRV-KKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIG 108 (359)
Q Consensus 30 ~f~~kylGs~~V~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~~~~~ 108 (359)
+|.|+|||++.|..++|++.++.+ +++... +...++ +.++|.|+||++||++.+.+ ..++.++|+|||||+.|+
T Consensus 3 ty~VkYLG~~~t~~~~Geg~t~~av~~I~~~-~~~~~k--~~~km~L~Vsp~GI~~~~~~--~~~~~~~i~RIsYCsad~ 77 (133)
T cd01214 3 TYTVLYLGNVLTIQARGEGCTEKALGKIWSK-YEAGAR--QDTKMKLTVSASGLKAVTAQ--RGLTEYWAHRITYCVAPA 77 (133)
T ss_pred cEEEEEcccccccccCCCccHHHHHHHHHHH-Hhhccc--ccceEEEEEcCCceEEEecc--ccceEEEEeeeeeecCCc
Confidence 599999999999999999887654 444433 222222 24589999999999999877 556789999999999998
Q ss_pred CceEEeeecccccccCCCCCCCCCCCcceeeEeeccc---hhhHHhhcchhhHHHHHHHHH
Q psy5022 109 DLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE---AQFIAQSIGQAFQVAYMEFLK 166 (359)
Q Consensus 109 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~---a~~i~~~ig~af~~ay~~~L~ 166 (359)
+ ..+.|+||.+.++. .....+.||+|.|++ |+.|+++++|+|..||++|-+
T Consensus 78 ~-----~p~VFa~I~r~~~~--~~~~~l~CHAvlC~k~~~A~aial~L~q~f~~A~~~~kr 131 (133)
T cd01214 78 R-----YPKVFCWIYRHEGK--HLKVELRCHAVLCSKPEKAQAIALLLYQTLANALAEFKR 131 (133)
T ss_pred C-----CCcEEEEEEeeccc--ccCcceEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7 67899999754321 124679999999987 999999999999999999965
No 18
>KOG3209|consensus
Probab=99.86 E-value=2.3e-21 Score=189.77 Aligned_cols=152 Identities=28% Similarity=0.444 Sum_probs=124.9
Q ss_pred cccEEEEeeCCCCCccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH-----HHHhhc-CCC
Q psy5022 202 ELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-----YMEFLK-ANG 275 (359)
Q Consensus 202 ~~~~~v~l~r~~~~~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~-----~~~~~~-~~~ 275 (359)
....+|.|.|.++++|||.|..+-. .+..-|..|++||||++||+|++||+|++|||.++.+ .+..++ .+-
T Consensus 752 ~~~yDV~lhR~ENeGFGFVi~sS~~---kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGl 828 (984)
T KOG3209|consen 752 SGPYDVVLHRKENEGFGFVIMSSQN---KPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGL 828 (984)
T ss_pred CCCeeeEEecccCCceeEEEEeccc---CCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCc
Confidence 3467899999999999999986421 1223388999999999999999999999999999887 444444 344
Q ss_pred eEEEEEEeCcc-----------------------------------eE--------------------------Eeeccc
Q psy5022 276 IEDHSFVKEMD-----------------------------------YQ--------------------------EVLNSQ 294 (359)
Q Consensus 276 ~v~l~v~~~~~-----------------------------------~~--------------------------~~~~~~ 294 (359)
.|+|+|.+..+ +. .+.+..
T Consensus 829 sVtLtIip~ee~~~~~~~~sa~~~s~~t~~~~~~q~~glp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~VelErG~ 908 (984)
T KOG3209|consen 829 SVTLTIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQQYGLPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVELERGA 908 (984)
T ss_pred eEEEEEcChhccCCCCCCcchhhcCcccccCCHhHccCCCCCCccccccCCCCccccceeccccccccCCeeEEEeeccc
Confidence 68999875321 00 033667
Q ss_pred cccCcEEecccccccCcEEEEEcCCChhhc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 295 EIFGDELQMFAKKELQKEICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 295 ~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~-~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
++|||+++++...+.+.||.++.++|||.+ +++++||+|++|||++..+++|+.++++||+.
T Consensus 909 kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~g 971 (984)
T KOG3209|consen 909 KGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQG 971 (984)
T ss_pred cccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhC
Confidence 899999999977778889999999999999 56999999999999999999999999999974
No 19
>KOG3209|consensus
Probab=99.85 E-value=1.2e-20 Score=184.83 Aligned_cols=178 Identities=25% Similarity=0.417 Sum_probs=138.3
Q ss_pred cccchhhhhhhcccccccchhh----hhhcccccEEEEeeCCCCCccceEEEecCCCCcCCcEEEEEECCCChhhhcCCC
Q psy5022 175 FVKEMDYQEVLNSQEIFGDELQ----MFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQL 250 (359)
Q Consensus 175 ~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~v~l~r~~~~~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L 250 (359)
.++.+.++.++.+..+|.+... .+..+..-.+|.|.|.+ .+|||.|.++. .....++|..|.+.+.|++.|||
T Consensus 617 qrkpdp~~~we~Sraiyesr~~Ps~tsn~~pdk~ldV~L~rke-sGFGFRiLGG~--ep~qpi~iG~Iv~lGaAe~DGRL 693 (984)
T KOG3209|consen 617 QRKPDPTEEWEKSRAIYESRMRPSSTSNQKPDKELDVFLRRKE-SGFGFRILGGD--EPGQPIYIGAIVPLGAAEEDGRL 693 (984)
T ss_pred ccCCChHHHhhhcccchhccCCCCCccccCCccceeEEEEeec-cccceEEecCC--CCCCeeEEeeeeecccccccCcc
Confidence 4466778888888888865521 12223344568888876 49999999542 23357899999999999999999
Q ss_pred CCCCEEEEECCccHHH--------HHHhhcCCCeEEEEEEeCc-----------------ceEEee--ccccccCcEEec
Q psy5022 251 NIGDQIIAVNGVSLVA--------YMEFLKANGIEDHSFVKEM-----------------DYQEVL--NSQEIFGDELQM 303 (359)
Q Consensus 251 ~~GD~Il~Vng~~v~~--------~~~~~~~~~~v~l~v~~~~-----------------~~~~~~--~~~~~~G~~~~~ 303 (359)
+.||.|+.|||++|.+ +++....++.|.|+|.|.. .|.+++ +.+++|||.+..
T Consensus 694 ~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtVRRkv~~~~~~rsp~~s~~~~~~yDV~lhR~ENeGFGFVi~s 773 (984)
T KOG3209|consen 694 REGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTVRRKVRTGPARRSPRNSAAPSGPYDVVLHRKENEGFGFVIMS 773 (984)
T ss_pred cCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEEeeeeeeccccCCcccccCCCCCeeeEEecccCCceeEEEEe
Confidence 9999999999999987 5555555668999998642 233333 567899999875
Q ss_pred ccccccCcEEEEEcCCChhhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 304 FAKKELQKEICSLLRGGIAERGG-VRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 304 ~~~~~~~~~I~~v~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
..+.. +.-|.+|.+||||+++| |++||+|++|||++|.+++|.++|++||.+
T Consensus 774 S~~kp-~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKda 826 (984)
T KOG3209|consen 774 SQNKP-ESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDA 826 (984)
T ss_pred cccCC-CCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhc
Confidence 44332 23499999999999965 999999999999999999999999999975
No 20
>KOG3775|consensus
Probab=99.78 E-value=4.1e-19 Score=162.86 Aligned_cols=148 Identities=26% Similarity=0.292 Sum_probs=117.6
Q ss_pred eecccccccccCCCCCCcccCcCCCCcEEEEeeeEEEEeccCCChhh-HHHHHHHHHHHhCCCCCCCCCcEEEEEEECCe
Q psy5022 3 YVDSHHVGCTQALPEDPVVDTGLGPGTLFRLKFLGSVQVDEDDPKCC-KRRVKKVMVEEAAPEGETQPSTEVDLFISTEK 81 (359)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~l~~gv~f~~kylGs~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~iS~~g 81 (359)
+||.++..+...|+.+-.. -+|.++||||+||..++|+++ ++|++|+....+.+ -+.++...|.|.||..|
T Consensus 318 evd~~eed~lg~l~~~~~~-------erf~l~~LgSVEv~~HKGngVlcqAm~KI~t~ykns-~~~~~p~s~~lEislRg 389 (482)
T KOG3775|consen 318 EVDGPEEDLLGSLRSPCWV-------ERFDLQFLGSVEVPCHKGNGVLCQAMQKIATAYKNS-VHLRPPASCVLEISLRG 389 (482)
T ss_pred ecCCchhhhhhccCCccch-------hheeeeeeeeeEeecccCccHHHHHHHHHHHHhcCC-ccccCcchhhhhhhcce
Confidence 3455555555555544322 249999999999999999998 56777776443333 34556788999999999
Q ss_pred eEEEeCC------ccceeeccccceeeeEEecCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc-hhhHHhhcc
Q psy5022 82 IMVLNTD------LKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE-AQFIAQSIG 154 (359)
Q Consensus 82 i~~~~~~------t~~~~~~~~l~~IS~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~-a~~i~~~ig 154 (359)
|++.+.. ++.+-+.+.|+|||||+-+.. ++++|+|| +|++...+++||||.|.+ ...++..||
T Consensus 390 V~~s~k~~~~~~k~~~c~~f~~lknisfc~~hpr-----~n~~~gfi-----tkhp~~~rfachVfks~es~rpvA~sVg 459 (482)
T KOG3775|consen 390 VKLSLKGGGPEFKFQRCSHFFQLKNISFCGCHPR-----NNCYFGFI-----TKHPLLSRFACHVFKSQESTRPVAESVG 459 (482)
T ss_pred eEeecCCCCccccccccceeeEecccceeccccc-----cceEEEee-----ccchhhhheeeeeeecccCChHHHHHHH
Confidence 9998754 445667789999999997775 78899999 788889999999999988 899999999
Q ss_pred hhhHHHHHHHHHhc
Q psy5022 155 QAFQVAYMEFLKAN 168 (359)
Q Consensus 155 ~af~~ay~~~L~~~ 168 (359)
+||+..||+||+..
T Consensus 460 RaF~~~yq~fl~~a 473 (482)
T KOG3775|consen 460 RAFQEFYQEFLEYA 473 (482)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999754
No 21
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.76 E-value=7.2e-18 Score=132.37 Aligned_cols=121 Identities=17% Similarity=0.264 Sum_probs=93.0
Q ss_pred EEEEeeeEEEEeccCC-ChhhHH-HHHHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccceeeccccceeeeEEec
Q psy5022 30 LFRLKFLGSVQVDEDD-PKCCKR-RVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADI 107 (359)
Q Consensus 30 ~f~~kylGs~~V~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~~~~ 107 (359)
.|.+-|-|-+.|...+ +..+++ .++|........ +...+++.|.|+-.+|.++|++|+.++++|++++||||+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~li~e~I~K~~~~~~~k---r~~nrtm~~~I~~~~v~lispdtK~vl~~k~f~dISsC~qg 79 (129)
T cd01269 3 KFEVLYCGRVTVTHKKAPSSLIDDCIEKFSLHEQQR---LKDNRTMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQG 79 (129)
T ss_pred eeEEEEEeeEEEeeccCChHHHHHHHHHhhhhhhhh---ccCCcEEEEEEeccceEEEcCCcceEEEecCccccchhhcC
Confidence 3899999999995554 555555 445554222111 11245799999999999999999999999999999999988
Q ss_pred CCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc---hhhHHhhcchhhHHH
Q psy5022 108 GDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE---AQFIAQSIGQAFQVA 160 (359)
Q Consensus 108 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~---a~~i~~~ig~af~~a 160 (359)
.+ +.+.|+||++.. .......++||||+|+. |.+|..+++|||.+|
T Consensus 80 ~~-----~~dhFgFIcrEs--~~~~~~~f~CyVFqc~Se~la~eI~lti~QAF~~a 128 (129)
T cd01269 80 IK-----HVDHFGFICRES--PEPGLSQYICYVFQCADESLVDEVMLTLKQAFSTA 128 (129)
T ss_pred CC-----CcceEEEEeccC--CCCCcceEEEEEEEcCCHHHHHHHHHHHHHHHhhc
Confidence 87 789999996432 11122459999999654 999999999999986
No 22
>PF14719 PID_2: Phosphotyrosine interaction domain (PTB/PID)
Probab=99.73 E-value=3.4e-17 Score=140.20 Aligned_cols=126 Identities=19% Similarity=0.320 Sum_probs=98.7
Q ss_pred EEEEeeeEEEEeccCCChhhHHHHHHHH-HHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccceeeccccceeeeEEecC
Q psy5022 30 LFRLKFLGSVQVDEDDPKCCKRRVKKVM-VEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIG 108 (359)
Q Consensus 30 ~f~~kylGs~~V~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~~~~~ 108 (359)
+|.|+|||++.+...+|++.++.+...+ .+.. .. .+..++.|+|+.+||++.+.+ .-+..++|+|||||+.|+
T Consensus 1 ty~V~YLG~~~t~~~~Gegct~kpV~~lw~~~~-~~---k~~~~m~L~V~~~Gik~~~~~--~~~~~y~i~RItYC~ad~ 74 (182)
T PF14719_consen 1 TYKVRYLGNVLTRGAKGEGCTEKPVSKLWRRYK-QG---KPDKKMKLTVSPSGIKMETKD--KGLTEYWIHRITYCTADP 74 (182)
T ss_pred CeEEEEecceecccccccchHHHHHHHHHHHhc-cC---CCCceeEEEEcCCceEEEECC--CCceEEEeeeEEEecCCC
Confidence 5999999999998888988877554444 4332 22 145689999999999999988 556668999999999876
Q ss_pred CceEEeeecccccccCCCCCCCCCCCcceeeEeeccc---hhhHHhhcchhhHHHHHHHHHhc
Q psy5022 109 DLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE---AQFIAQSIGQAFQVAYMEFLKAN 168 (359)
Q Consensus 109 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~---a~~i~~~ig~af~~ay~~~L~~~ 168 (359)
. ..+.|++|.+.+.. .....+.||+|.|++ |+.|+.++.++|..||++|.+..
T Consensus 75 ~-----~PrVFawIyrhe~~--~~~~~L~CHAvlC~k~~~Akama~~L~~af~~Af~~~kr~k 130 (182)
T PF14719_consen 75 Q-----HPRVFAWIYRHEGK--KLKVELRCHAVLCSKEEKAKAMARALYQAFRSAFQEFKRDK 130 (182)
T ss_pred C-----CCceEEEEEEcccC--CCcccEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 57778777643211 123559999999987 99999999999999999998644
No 23
>KOG3537|consensus
Probab=99.72 E-value=3.4e-17 Score=153.02 Aligned_cols=144 Identities=18% Similarity=0.279 Sum_probs=118.9
Q ss_pred cccccccCCCCCCcccCcCCCC-cEEEEeeeEEEEeccCCChhhHHHHHHHHHHHhCCCCCCCCCcEEEEEEECCeeEEE
Q psy5022 7 HHVGCTQALPEDPVVDTGLGPG-TLFRLKFLGSVQVDEDDPKCCKRRVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVL 85 (359)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~l~~g-v~f~~kylGs~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~ 85 (359)
-+++.|.+|.|+++.+ ....| +.|.|||||++||.+.+|..+++.+.|.+.+. +. +.-+-.|-||-+|++|+
T Consensus 15 ~Vpe~SkphQWQ~DE~-aVRtgtCsF~VkYLG~VEV~ESRGM~vCE~AlK~Lkas----~r--k~VkavL~VS~DGLRVV 87 (543)
T KOG3537|consen 15 YVPEASKPHQWQADEE-AVRTGTCSFPVKYLGHVEVFESRGMQVCEDALKVLKAS----RR--KPVKAVLWVSGDGLRVV 87 (543)
T ss_pred CCCCCCCccccccchh-hhccceeeeeeeeeeeEEEecccCcHHHHHHHHHHHHh----cc--CcceeEEEEccCceEEe
Confidence 4678899999998874 45556 89999999999999999999988665544221 11 12356799999999999
Q ss_pred eCCccceeeccccceeeeEEecCCceEEeeecccccccCCCCCCCCCCCcceeeEee-ccc-hhhHHhhcchhhHHHHHH
Q psy5022 86 NTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFE-SDE-AQFIAQSIGQAFQVAYME 163 (359)
Q Consensus 86 ~~~t~~~~~~~~l~~IS~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~-s~~-a~~i~~~ig~af~~ay~~ 163 (359)
|.+|+-+|-+--|.+|||||-|-+ ..|.|+||+ .|....+..||-|. |.+ ++.++.++|.||..+.++
T Consensus 88 D~~tk~LiVDQTIEKVSFCAPDRn-----~Dr~FsYIC-----RDGttRRW~CH~FlA~KdsGERLSHAVGCAFa~CLEr 157 (543)
T KOG3537|consen 88 DDKTKGLIVDQTIEKVSFCAPDRN-----HDRGFSYIC-----RDGTTRRWMCHGFLACKDSGERLSHAVGCAFAACLER 157 (543)
T ss_pred ccCccceeeeeeeeeeeccccccc-----cccceeEEe-----ecCCcceeeeeeeeeecchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877 678999994 56778899999999 445 999999999999999877
Q ss_pred HHHh
Q psy5022 164 FLKA 167 (359)
Q Consensus 164 ~L~~ 167 (359)
-.+.
T Consensus 158 KqRR 161 (543)
T KOG3537|consen 158 KQRR 161 (543)
T ss_pred Hhhh
Confidence 6653
No 24
>cd01211 GAPCenA GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA is a centrosome-associated GTPase activating protein (GAP) for rab 6. It consists of an N-terminal PTB domain and a C-terminal TBC domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.70 E-value=1.2e-16 Score=125.69 Aligned_cols=111 Identities=19% Similarity=0.300 Sum_probs=81.2
Q ss_pred EEeeeEEEEeccCCChhhHHHHHHHHHHHhCCCCCCCCCcEEEEEEE--CCe-eEEEeCCccceeeccccceeeeEEe--
Q psy5022 32 RLKFLGSVQVDEDDPKCCKRRVKKVMVEEAAPEGETQPSTEVDLFIS--TEK-IMVLNTDLKEIMMDHALRTISYIAD-- 106 (359)
Q Consensus 32 ~~kylGs~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~iS--~~g-i~~~~~~t~~~~~~~~l~~IS~~~~-- 106 (359)
.++|||++.|..++++.++.++.+.|... ...+ ..+|.|.|. ++| |+++|++|+..|++++|+||+||+.
T Consensus 5 ~vtYLGct~V~aP~sE~e~~r~m~~l~~~----s~~~-~i~Vtl~Vp~~seG~V~l~D~~t~~~ias~~I~rI~fC~rG~ 79 (125)
T cd01211 5 NVTYLGCSQLVNPDSENEMKRLMKVLDEQ----SGAQ-TINVTLVVPNNIEGTVKLIDAQSNKVIASFSIVNIRFCIRGE 79 (125)
T ss_pred CcEEeeeEEecCCCCHHHHHHHHHHHHhh----cccC-CeEEEEEecCCCCceEEEEcCCCCcEEEEEEEEEEEEEEecC
Confidence 36899999999999888876544444221 1111 457888887 666 9999999999999999999999994
Q ss_pred -cCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc---hhhHHhhcchhh
Q psy5022 107 -IGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE---AQFIAQSIGQAF 157 (359)
Q Consensus 107 -~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~---a~~i~~~ig~af 157 (359)
+.. .++.|+|. ..+.....|.||||.|+. +..+-.+.+.||
T Consensus 80 ~~t~-----e~~cFAft-----~s~~~se~~qcHVFrC~~~eav~kil~sF~~AF 124 (125)
T cd01211 80 SSTS-----ENNCFAFT-----FTHKISILFQCHVFRCSIAEAVAKALYSFSYAF 124 (125)
T ss_pred CCCc-----ccccEEEE-----eecCCceEEEEEEEecCCHHHHHHHHHHHHHhh
Confidence 443 56678887 455667899999999986 333444344444
No 25
>cd01213 tensin Tensin Phosphotyrosine-binding (PTB) domain. Tensin Phosphotyrosine-binding (PTB) domain. Tensin is a a focal adhesion protein, which contains a C-terminal SH2 domain followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.61 E-value=4.7e-15 Score=121.49 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=87.3
Q ss_pred CCCCcEEEEeeeEEEEeccCCChhhHH-HHHHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccc-eeeccccceee
Q psy5022 25 LGPGTLFRLKFLGSVQVDEDDPKCCKR-RVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKE-IMMDHALRTIS 102 (359)
Q Consensus 25 l~~gv~f~~kylGs~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~-~~~~~~l~~IS 102 (359)
|..|+.|.++||||++|....|....+ ++++.+.+ ....+.++|.|.||.+||+++|..++. ...++++.+||
T Consensus 2 l~qgaa~nv~yLgS~evesltg~~av~kAv~~~l~~-----~~~~~~t~vh~kVS~qGItLtDn~rk~ffrrhypl~~Vs 76 (138)
T cd01213 2 LAQGAACNVLYLGSVDTESLTGNEAIKKAIAQCSGQ-----APDPQATEVHFKVSSQGITLTDNTRKKFFRRHYKVDSVI 76 (138)
T ss_pred cccccccceeeeeeEeeccccCcHHHHHHHHHHHhc-----CCCCCceEEEEEEEcCCeeeeccccceeehhhCCcCeEE
Confidence 567899999999999998888887754 44444432 224457899999999999999998877 44568999999
Q ss_pred eEEecCCceEE------eeecccccccCCCCCCCCCCCcceeeEeeccc----hhhHHhhc
Q psy5022 103 YIADIGDLVVL------MARRRFVSQEADEPPKISRTPKMICHVFESDE----AQFIAQSI 153 (359)
Q Consensus 103 ~~~~~~~~~~~------~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~----a~~i~~~i 153 (359)
||+.|++---| .++|.|+|+++.. .......||||..-+ |..|..-+
T Consensus 77 ~ca~dp~n~~~~~~~~~~~kriFgFVar~~----~~~~~~~ChvF~e~~~~qpa~~iv~~~ 133 (138)
T cd01213 77 FCAIDPEERMWENEGAIAKARIFAFVARIP----HSSTDNACHVFAELEPEQPASAIVNFA 133 (138)
T ss_pred EEeeCCccccccccccccccEEEEEEEecC----CCCCCeeEEEeccCCCCCCHHHHHHHH
Confidence 99987752111 1468899997531 222458999999432 66665433
No 26
>KOG3535|consensus
Probab=99.54 E-value=3.2e-14 Score=132.52 Aligned_cols=124 Identities=22% Similarity=0.299 Sum_probs=98.0
Q ss_pred CCCcEEEEeeeEEEEeccCCChhhHH-HHHHHH--HHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccceeeccccceee
Q psy5022 26 GPGTLFRLKFLGSVQVDEDDPKCCKR-RVKKVM--VEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTIS 102 (359)
Q Consensus 26 ~~gv~f~~kylGs~~V~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS 102 (359)
.+||.|.+|.+|--+|+..+|+.+++ .++|+. +...+..+.. .+++.|.||++||||+|.+|+.++|+|++++||
T Consensus 46 g~GV~YKaKLIGiddV~~ARGDkmcqdsMmklKGvva~~rs~G~H--KqrI~l~Is~~GIKI~DEKtGav~H~hpV~~IS 123 (557)
T KOG3535|consen 46 GNGVSYKAKLIGIDDVDKARGDKMCQDSMMKLKGVVAIIRSAGAH--KQRITLQISIDGIKILDEKTGAVLHNHPVSRIS 123 (557)
T ss_pred CCCeeeeeeeccccccchhhhhhHHHHHHHHhhhhhhhhhccccc--cceEEEEEeecceEEeeccccceeccCccceee
Confidence 57899999999999999999999976 444443 3444444543 468999999999999999999999999999999
Q ss_pred eEEecCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc-hhhHHhhcchhhHHHHHH
Q psy5022 103 YIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE-AQFIAQSIGQAFQVAYME 163 (359)
Q Consensus 103 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~-a~~i~~~ig~af~~ay~~ 163 (359)
|+|.|-. |+|.|+|++.. ..++.-+...... |+.+.+.+-.-|++-|.-
T Consensus 124 fIArD~t-----D~RAFGyVcG~-------eG~hkF~aIKTaQaAep~VldlrDlFQvIye~ 173 (557)
T KOG3535|consen 124 FIARDST-----DARAFGYVCGE-------EGKHKFYAIKTAQAAEPAVLDLRDLFQVIYEM 173 (557)
T ss_pred eeecccc-----cccceeeeecC-------CCceeEEEEecccccchhhHhHHHHHHHHHHH
Confidence 9996655 79999999732 2333334444444 777999999999999953
No 27
>KOG3697|consensus
Probab=99.54 E-value=3.3e-15 Score=133.01 Aligned_cols=131 Identities=27% Similarity=0.436 Sum_probs=94.1
Q ss_pred ccCcCCCCcEEEEeeeEEEEeccCC--ChhhHH--HHHHHH--HHHh----------CC-----------CCCCCCCcEE
Q psy5022 21 VDTGLGPGTLFRLKFLGSVQVDEDD--PKCCKR--RVKKVM--VEEA----------AP-----------EGETQPSTEV 73 (359)
Q Consensus 21 ~~~~l~~gv~f~~kylGs~~V~~~~--~~~~~~--~~~~~~--~~~~----------~~-----------~~~~~~~~~v 73 (359)
.++.+..||.|.++||||+||.+.. -++.++ ..++.+ ..++ ++ ..-......+
T Consensus 9 ~d~v~~~GVs~~v~YlGcVeV~~Sm~~ldf~trtq~~re~is~vceav~g~kgat~rR~~n~~~s~i~gr~~lq~a~m~I 88 (345)
T KOG3697|consen 9 ADEVRGPGVSYSVTYLGCVEVLESMNVLDFNTRTQMTREAISRVCEAVPGAKGATKRRPINPVLSSILGRSNLQFAGMSI 88 (345)
T ss_pred HHhhccCCceEEEEEeeeehHHhhhhhhhhccHHHHHHHHHHHHHHhccccccccccCCCcccchhhcCccccccCCcce
Confidence 3457889999999999999994433 333322 112221 1111 10 0012346789
Q ss_pred EEEEECCeeEEEeCCccceeeccccceeeeEE-ecCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc--hhhHH
Q psy5022 74 DLFISTEKIMVLNTDLKEIMMDHALRTISYIA-DIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE--AQFIA 150 (359)
Q Consensus 74 ~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~~-~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~--a~~i~ 150 (359)
.|+||+..|.+...++++++.+|.++.|||.+ .|.+ --.+.+|+ +|++ .++.+||||+|.. |+.+.
T Consensus 89 ~itvst~sL~l~~~d~kqiianh~m~~isfasGgD~D-----t~~~~ayv-----aKD~-~~rRac~Vlec~~g~a~DVI 157 (345)
T KOG3697|consen 89 TLTISTSSLNLMTADCKQIIANHHMQSISFASGGDPD-----TADYVAYV-----AKDP-VNRRACHILECCDGLAQDVI 157 (345)
T ss_pred EEEeehhhhhhhhhHhhhhhhhccccccccccCCCch-----hhhHHhhh-----ccCc-cccceeEEEeccCchhHHHH
Confidence 99999999999999999999999999999998 3333 12244555 3433 4568999999987 99999
Q ss_pred hhcchhhHHHHH
Q psy5022 151 QSIGQAFQVAYM 162 (359)
Q Consensus 151 ~~ig~af~~ay~ 162 (359)
.||||||.+.|+
T Consensus 158 ~Tigqaf~lrfk 169 (345)
T KOG3697|consen 158 GTIGQAFELRFK 169 (345)
T ss_pred Hhhhhhheeecc
Confidence 999999999998
No 28
>KOG3580|consensus
Probab=99.53 E-value=5e-14 Score=136.47 Aligned_cols=148 Identities=24% Similarity=0.381 Sum_probs=111.4
Q ss_pred cEEEEeeCCCCCccceEEEecC----CCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH-----HHHhhcC-
Q psy5022 204 QKEVVVPKAKGEILGVVIVESG----WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-----YMEFLKA- 273 (359)
Q Consensus 204 ~~~v~l~r~~~~~lG~~i~~~~----~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~-----~~~~~~~- 273 (359)
.++++|.|+.+.+||+.|.++. +......++|+.|.||+||+ |+||.||+|+.|||++..+ .++.++.
T Consensus 9 QhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQqLrks 86 (1027)
T KOG3580|consen 9 QHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQLRKS 86 (1027)
T ss_pred hheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHHHHhh
Confidence 3579999999889999998652 11223468999999999998 7899999999999999988 5666654
Q ss_pred CCeEEEEEEeCcceEE----------------------------------------------------------------
Q psy5022 274 NGIEDHSFVKEMDYQE---------------------------------------------------------------- 289 (359)
Q Consensus 274 ~~~v~l~v~~~~~~~~---------------------------------------------------------------- 289 (359)
++...++|.|....++
T Consensus 87 gK~A~ItvkRprkvqvpa~~asPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~~R~rsre 166 (1027)
T KOG3580|consen 87 GKVAAITVKRPRKVQVPALQASPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSRE 166 (1027)
T ss_pred ccceeEEecccceeeccccCCCCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCccccccccc
Confidence 3344555553210000
Q ss_pred -------------------------------------ee--ccccccCcEEecccccccCcEEEEEcCCChhhc-CCCCC
Q psy5022 290 -------------------------------------VL--NSQEIFGDELQMFAKKELQKEICSLLRGGIAER-GGVRV 329 (359)
Q Consensus 290 -------------------------------------~~--~~~~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~-~gL~~ 329 (359)
++ +..+.||+.+.. .+||..|...|.|++ ++|+.
T Consensus 167 r~ls~~~~gprs~~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrLgS------qIFvKeit~~gLAardgnlqE 240 (1027)
T KOG3580|consen 167 RDLSRDRRGPRSRSREHPSSRSPSPEPRGRPGPIKVLLVKSRANEEYGLRLGS------QIFVKEITRTGLAARDGNLQE 240 (1027)
T ss_pred cccccCCCCCcccccccccCCCCCCCccCCCCcceEEEEeeccchhhcccccc------hhhhhhhcccchhhccCCccc
Confidence 00 123345554432 458999999999999 77999
Q ss_pred CCEEEEECCEECCCCCHHHHHHHHHhccCC
Q psy5022 330 GHRIIEINNQSVVAVPHEKIVNLLATSVGE 359 (359)
Q Consensus 330 GD~Il~INg~~v~~~~~~~~v~~l~~s~g~ 359 (359)
||.||.|||+...|++..++..+|..+.|+
T Consensus 241 GDiiLkINGtvteNmSLtDar~LIEkS~GK 270 (1027)
T KOG3580|consen 241 GDIILKINGTVTENMSLTDARKLIEKSRGK 270 (1027)
T ss_pred ccEEEEECcEeeccccchhHHHHHHhccCc
Confidence 999999999999999999999999999885
No 29
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.50 E-value=1.4e-13 Score=136.56 Aligned_cols=121 Identities=17% Similarity=0.296 Sum_probs=91.3
Q ss_pred cEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCcceEE---eec----------
Q psy5022 232 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEMDYQE---VLN---------- 292 (359)
Q Consensus 232 ~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~~~~~---~~~---------- 292 (359)
..+|..|.++|||+++| |++||+|++|||+++.+ .+.....++++++++.|+..... ...
T Consensus 127 ~~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~~~~~~ 205 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWAFEPDK 205 (449)
T ss_pred CccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEecccccccCccc
Confidence 45789999999999999 99999999999999877 34444556678999988653211 110
Q ss_pred --cccccCcEEecccccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccC
Q psy5022 293 --SQEIFGDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVG 358 (359)
Q Consensus 293 --~~~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~g 358 (359)
....+|+... .+..+..|..|.++|||+++||++||+|++|||+++.+ ++++.+.++...|
T Consensus 206 ~~~~~~lGl~~~---~~~~~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s--~~dl~~~l~~~~~ 268 (449)
T PRK10779 206 QDPVSSLGIRPR---GPQIEPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQ--WQTFVTLVRDNPG 268 (449)
T ss_pred cchhhccccccc---CCCcCcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhCCC
Confidence 1123454322 12224689999999999999999999999999999976 5888888876554
No 30
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.46 E-value=5.9e-13 Score=131.55 Aligned_cols=123 Identities=21% Similarity=0.358 Sum_probs=95.2
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCcceEE---eec---------
Q psy5022 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEMDYQE---VLN--------- 292 (359)
Q Consensus 231 ~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~~~~~---~~~--------- 292 (359)
.+++|..|.++|||+++| |++||+|++|||+++.+ .+.....+..+++++.|+..... ...
T Consensus 257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~ 335 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKGKEKTITVTLGASPEEQASS 335 (428)
T ss_pred CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECcCCCccccc
Confidence 478999999999999999 99999999999999876 44445567789999988653321 110
Q ss_pred cccccCcEEecccc----------cccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 293 SQEIFGDELQMFAK----------KELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 293 ~~~~~G~~~~~~~~----------~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
....+|+.+..... ...+.+|.+|.++|||+++||++||+|++|||+++.+ .+++.++|++.
T Consensus 336 ~~~~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s--~~d~~~~l~~~ 407 (428)
T TIGR02037 336 SNPFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSS--VAELRKVLDRA 407 (428)
T ss_pred cccccceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhc
Confidence 11235766653211 1146799999999999999999999999999999976 58889988864
No 31
>PRK10942 serine endoprotease; Provisional
Probab=99.42 E-value=2.1e-12 Score=128.60 Aligned_cols=123 Identities=20% Similarity=0.266 Sum_probs=93.0
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCcceEEe---e-c--------
Q psy5022 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEMDYQEV---L-N-------- 292 (359)
Q Consensus 231 ~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~~~~~~---~-~-------- 292 (359)
.+++|..|.++|||+++| |+.||+|++|||+++.+ .+.....++.+.+.+.|+.....+ . .
T Consensus 311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l~~~~~~~~~~ 389 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQQSSQNQVDS 389 (473)
T ss_pred CceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCeEEEEEEEeCcCccccccc
Confidence 478999999999999999 99999999999999876 344445677889998886543211 1 1
Q ss_pred cccccCcEEeccc--ccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 293 SQEIFGDELQMFA--KKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 293 ~~~~~G~~~~~~~--~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
....+|+...... ....+.+|.+|.++|+|+++||++||+|++|||+++.+ ++++.+++++.
T Consensus 390 ~~~~lGl~g~~l~~~~~~~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s--~~dl~~~l~~~ 453 (473)
T PRK10942 390 SNIFNGIEGAELSNKGGDKGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKN--IAELRKILDSK 453 (473)
T ss_pred ccccccceeeecccccCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhC
Confidence 0112454332211 11236789999999999999999999999999999986 58999888763
No 32
>PRK10139 serine endoprotease; Provisional
Probab=99.41 E-value=2.4e-12 Score=127.58 Aligned_cols=123 Identities=19% Similarity=0.289 Sum_probs=91.0
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCcceEE---eeccc-----c-
Q psy5022 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEMDYQE---VLNSQ-----E- 295 (359)
Q Consensus 231 ~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~~~~~---~~~~~-----~- 295 (359)
.+++|..|.++|||+++| |++||+|++|||+++.+ .+...+.++.+.+++.|+..... ..... .
T Consensus 290 ~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~~~~~~~~~~ 368 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASA 368 (455)
T ss_pred CceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCCCccccc
Confidence 478999999999999999 99999999999999876 34444556788999888654321 11100 1
Q ss_pred ------ccCcEEeccc--ccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 296 ------IFGDELQMFA--KKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 296 ------~~G~~~~~~~--~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
..|+.+.... ....+.+|..|.++|||+++||++||+|++|||+++.+ ++++.+.+++.
T Consensus 369 ~~~~~~~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~--~~~~~~~l~~~ 435 (455)
T PRK10139 369 EMITPALQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNS--IAEMRKVLAAK 435 (455)
T ss_pred ccccccccccEecccccccCCCceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhC
Confidence 1122222110 01136789999999999999999999999999999976 58899988764
No 33
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.40 E-value=2e-12 Score=127.22 Aligned_cols=117 Identities=19% Similarity=0.250 Sum_probs=87.6
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCcceEEeeccccccCcEEecc
Q psy5022 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEMDYQEVLNSQEIFGDELQMF 304 (359)
Q Consensus 231 ~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~~~~~~~~~~~~~G~~~~~~ 304 (359)
.+.+|..|.++|||+++| |++||+|++|||+++.+ .+.... +.+.+.+.++.....+ .-.+++...
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~~dl~~~ia~~~--~~v~~~I~r~g~~~~l---~v~l~~~~~-- 199 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGFKDVRQQIADIA--GEPMVEILAERENWTF---EVMKELIPR-- 199 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhc--ccceEEEEEecCceEe---cccccceec--
Confidence 456889999999999999 99999999999999877 233333 4677777765332211 011222211
Q ss_pred cccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccC
Q psy5022 305 AKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVG 358 (359)
Q Consensus 305 ~~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~g 358 (359)
.+..+..|.+|.++|||+++||++||+|++|||+++.+ ++++.+.++.+++
T Consensus 200 -~~~~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s--~~dl~~~l~~~~~ 250 (420)
T TIGR00054 200 -GPKIEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRS--WTDFVSAVKENPG 250 (420)
T ss_pred -CCCcCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhCCC
Confidence 12236789999999999999999999999999999976 5899998887554
No 34
>KOG3580|consensus
Probab=99.26 E-value=2e-11 Score=118.76 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=50.3
Q ss_pred cccCcEEecccccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy5022 295 EIFGDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLA 354 (359)
Q Consensus 295 ~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~ 354 (359)
...|+.+.++ .+.++||..|.+|+||++-||+.||+||.||.+++.++..+++|..|-
T Consensus 417 dSvGLRLAGG--NDVGIFVaGvqegspA~~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL 474 (1027)
T KOG3580|consen 417 DSVGLRLAGG--NDVGIFVAGVQEGSPAEQEGLQEGDQILKVNTVDFRNLVREEAVLFLL 474 (1027)
T ss_pred CeeeeEeccC--CceeEEEeecccCCchhhccccccceeEEeccccchhhhHHHHHHHHh
Confidence 4457777764 456889999999999999999999999999999999999999987664
No 35
>cd01272 FE65_N Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor protein-binding. It contains an N-terminal WW domain followed by two PTB domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=99.21 E-value=1.3e-10 Score=92.35 Aligned_cols=115 Identities=21% Similarity=0.303 Sum_probs=81.1
Q ss_pred cEEEEeeeEEEEecc--CCChhhHHHHHHHHHHHhCCCCCC-------CCCcEEEEEEECCeeEEEeCCccceeeccccc
Q psy5022 29 TLFRLKFLGSVQVDE--DDPKCCKRRVKKVMVEEAAPEGET-------QPSTEVDLFISTEKIMVLNTDLKEIMMDHALR 99 (359)
Q Consensus 29 v~f~~kylGs~~V~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~ 99 (359)
+.|.|+-||.+|+.+ .-+..+..++.+-+.+....+... -.+++..|..--.-++++|+.++.+|+..||+
T Consensus 2 ~~faVrslGWve~~Eedl~p~~sS~avn~cI~~Ls~~~~d~~d~~g~wgeGk~~~m~L~~g~lkLiDP~~~s~LhSqPI~ 81 (138)
T cd01272 2 IRFAVRSLGWVEIAEEDLTPEKSSKAVNKCIVDLSLGRNDMLDVVGRWGDGKDLFMDLDEGALKLIDPENLTVLHSQPIH 81 (138)
T ss_pred cceeeeccceEEcchhhcCCcccHHHHHHHHHHHhccccccccCcCcccCcceeEEEecCCceEeeCCCCCceEEeeeee
Confidence 469999999999943 224444444433332222111111 12467788888899999999999999999999
Q ss_pred eeeeEEecCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc-hhhHHhhc
Q psy5022 100 TISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE-AQFIAQSI 153 (359)
Q Consensus 100 ~IS~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~-a~~i~~~i 153 (359)
+|-||+.-.+ +-+-|+|. ..+.+...+.||||.|+. |..|+.++
T Consensus 82 ~IRvwGvGrd-----ngrdFA~v-----ard~~T~~~~CHVFRC~~pak~ia~~l 126 (138)
T cd01272 82 TIRVWGVGRD-----NGRDFAYV-----IRDERTRGSNCHVFRCDTRAKDIATEL 126 (138)
T ss_pred EEEEEEecCC-----CCcceEEE-----eecCCCceeEEEEEEcCCCCccchHHH
Confidence 9999994433 33458888 456777899999999987 77776543
No 36
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.21 E-value=3.1e-11 Score=91.10 Aligned_cols=66 Identities=33% Similarity=0.500 Sum_probs=58.7
Q ss_pred cccccCcEEecccccc-cCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccC
Q psy5022 293 SQEIFGDELQMFAKKE-LQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVG 358 (359)
Q Consensus 293 ~~~~~G~~~~~~~~~~-~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~g 358 (359)
....|||.+....... .+.+|.+|.++|||+++||++||+|++|||+++.++++++++++|+.+.+
T Consensus 8 ~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~ 74 (81)
T PF00595_consen 8 GNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASN 74 (81)
T ss_dssp TTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTS
T ss_pred CCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCC
Confidence 5678999999765443 47899999999999998899999999999999999999999999998754
No 37
>KOG3550|consensus
Probab=99.20 E-value=2.7e-11 Score=98.46 Aligned_cols=71 Identities=31% Similarity=0.499 Sum_probs=65.4
Q ss_pred EeeccccccCcEEecccccccCcEEEEEcCCChhhc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCC
Q psy5022 289 EVLNSQEIFGDELQMFAKKELQKEICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359 (359)
Q Consensus 289 ~~~~~~~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~-~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~g~ 359 (359)
.+++...++||.+-++...+.++||++|+|||.|++ +||+.||++++|||.++.+-.|+.++++||++.|.
T Consensus 95 elpktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gs 166 (207)
T KOG3550|consen 95 ELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGS 166 (207)
T ss_pred ecCccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCc
Confidence 456778899999999888888999999999999999 88999999999999999999999999999998873
No 38
>PF08416 PTB: Phosphotyrosine-binding domain; InterPro: IPR013625 The phosphotyrosine-binding domain (PTB, also phosphotyrosine-interaction or PI domain) of tensin tends to be found at the C terminus of a protein. Tensin is a multi-domain protein that binds to actin filaments and functions as a focal-adhesion molecule (focal adhesions are regions of plasma membrane through which cells attach to the extracellular matrix). Human tensin has actin-binding sites, an SH2 (IPR000980 from INTERPRO) domain and a region similar to the tumour suppressor PTEN []. The PTB domain interacts with the cytoplasmic tails of beta integrin by binding to an NPXY motif []. ; GO: 0005515 protein binding; PDB: 3HQC_A 2DKQ_A 2LOZ_A 2CY5_A 2CY4_A 2GJY_A 1WVH_A.
Probab=99.17 E-value=5.4e-10 Score=91.90 Aligned_cols=116 Identities=17% Similarity=0.193 Sum_probs=82.6
Q ss_pred EEEeeeEEEEeccCCChhhHHH-HHHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccceeeccccceeeeEEecCC
Q psy5022 31 FRLKFLGSVQVDEDDPKCCKRR-VKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGD 109 (359)
Q Consensus 31 f~~kylGs~~V~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~~~~~~ 109 (359)
|.+.||+++.++...|...++. ++++..-++. .....+.|.|.|+.+||+++|..+++.+.++|+..|+||..+.+
T Consensus 2 ~~V~hL~T~~~e~~~g~~~v~d~i~~l~~l~~~---~~~w~q~~~lkV~~~~v~L~D~~~k~~le~yPl~~I~~c~~~~~ 78 (131)
T PF08416_consen 2 YNVEHLATFDVESLTGPQAVEDAIRRLKLLEAK---GRIWPQEMHLKVSDQGVTLTDIETKEFLEHYPLSSIQFCGADPD 78 (131)
T ss_dssp EEEEEEEEEEECTTSCCCHHHHHHHHHHHHHCS---S-SS-EEEEEEEETTEEEEEESSTSSECEEEECCCEEEEEEETT
T ss_pred cEEEEEEEEEcCCCcchhhHHHHHHHHHhhccC---CCcccEEEEEEEeCCeEEEEECcccchhhhCCHhHeeeccccCC
Confidence 8999999999987776555543 3444333322 23346899999999999999999999999999999999996654
Q ss_pred ceEEeeecccccccCCCCCCCCCCCcceeeEeeccc--hhhHHhhcchh
Q psy5022 110 LVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE--AQFIAQSIGQA 156 (359)
Q Consensus 110 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~--a~~i~~~ig~a 156 (359)
-..| ...|+|+++ .+......||+|.|++ |+.++..|-++
T Consensus 79 ~~~~--~~il~fV~r-----~~~~~~~~~H~Fqc~ev~a~~~~~~I~~~ 120 (131)
T PF08416_consen 79 SRRY--NSILGFVVR-----KPGSSKPNVHLFQCEEVDAEQPAEDIVSA 120 (131)
T ss_dssp TTEE--CBEEEEEEE-----ETTCCCEEEEEEEETCTCTTSHHHHHHHH
T ss_pred CCcc--ceEEEEEEe-----cCCCCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 2222 235666643 2334467789999987 77777766554
No 39
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin. The cytoplasmic domains of integrins are essential for cell adhesion, and the fact that phosphorylation of ICAP-1 by interaction with the cell-matrix implies an important role of ICAP-1 during integrin-dependent cell adhesion []. Over expression of ICAP-1 strongly reduces the integrin-mediated cell spreading on extracellular matrix and inhibits both Cdc42 and Rac1. In addition, ICAP-1 induces release of Cdc42 from cellular membranes and prevents the dissociation of GDP from this GTPase []. An additional function of ICAP-1 is to promote differentiation of osteoprogenitors by supporting their condensation through modulating the integrin high affinity state [].
Probab=99.16 E-value=4.4e-10 Score=94.98 Aligned_cols=122 Identities=23% Similarity=0.293 Sum_probs=85.1
Q ss_pred cEEEEeeeEEEEecc---CC-Ch---hhHHHHHHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccceeecccccee
Q psy5022 29 TLFRLKFLGSVQVDE---DD-PK---CCKRRVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTI 101 (359)
Q Consensus 29 v~f~~kylGs~~V~~---~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~I 101 (359)
..|.|||+|.++=-+ .+ .+ ++...+-......+.|-.. ...+|.|.||-.||||.+.+...+++.|||+.|
T Consensus 61 ~ef~Vkyvg~i~~l~~~~~~~le~pl~lI~~ID~aQq~GkLP~v~--~~eevil~VSKyGiKvt~~d~~~VL~RhpL~~I 138 (200)
T PF10480_consen 61 AEFRVKYVGAIESLQFSMSKSLEGPLELINYIDSAQQDGKLPFVP--SDEEVILSVSKYGIKVTDNDQRDVLHRHPLHEI 138 (200)
T ss_pred hheeeeeeeehhhcccccccccccHHHHHHHHHHHhhcCcCCCCC--CCCeEEEEEeeccEEEeecCCcceeeeeeeeeE
Confidence 579999999998732 22 22 2222211111222344332 235899999999999999999999999999999
Q ss_pred eeEE--ecC--CceEEeeecccccccCCCCCCCCCCCcceeeEeeccc---hhhHHhhcchhhHHHHH
Q psy5022 102 SYIA--DIG--DLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE---AQFIAQSIGQAFQVAYM 162 (359)
Q Consensus 102 S~~~--~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~---a~~i~~~ig~af~~ay~ 162 (359)
=-|. ||+ ....+++-+ .....+..+-||||+|.. |++|+..++++|+.+|.
T Consensus 139 vr~V~YdDGlG~g~~llAlK----------~~~~~~e~y~l~v~Qcss~~qA~~ICk~l~~aF~~v~t 196 (200)
T PF10480_consen 139 VRMVCYDDGLGAGKNLLALK----------VGDERQEEYQLWVYQCSSDEQAQEICKVLGQAFDSVLT 196 (200)
T ss_pred EEEEEEecCcCCcceEEEEE----------ccCCCcceEEEEEEEcCCHHHHHHHHHHHHHHHHHhhc
Confidence 8655 443 122444444 234556679999999876 99999999999999883
No 40
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.02 E-value=1.6e-09 Score=81.71 Aligned_cols=75 Identities=25% Similarity=0.417 Sum_probs=58.2
Q ss_pred EEEeeCCCCCccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH-----HHHhhc-CCCeEEE
Q psy5022 206 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-----YMEFLK-ANGIEDH 279 (359)
Q Consensus 206 ~v~l~r~~~~~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~-----~~~~~~-~~~~v~l 279 (359)
+|.+.|..+++|||.+.++.... ..+++|..+.|+|||+++| |++||+|++|||.++.+ .+..++ ....++|
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~-~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L 78 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDND-EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTL 78 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSS-SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCC-cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEE
Confidence 47788877789999998654321 3578999999999999999 99999999999999987 333333 2236887
Q ss_pred EEE
Q psy5022 280 SFV 282 (359)
Q Consensus 280 ~v~ 282 (359)
+|.
T Consensus 79 ~V~ 81 (81)
T PF00595_consen 79 TVQ 81 (81)
T ss_dssp EEE
T ss_pred EEC
Confidence 763
No 41
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.97 E-value=2.5e-09 Score=77.98 Aligned_cols=61 Identities=26% Similarity=0.345 Sum_probs=53.3
Q ss_pred ccCcEEecccccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccC
Q psy5022 296 IFGDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVG 358 (359)
Q Consensus 296 ~~G~~~~~~~~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~g 358 (359)
.+||.+..... .+.+|.+|.++|||+++||++||+|++|||.++.+++++++.++|+.+.|
T Consensus 2 ~~G~~~~~~~~--~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g 62 (70)
T cd00136 2 GLGFSIRGGTE--GGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVG 62 (70)
T ss_pred CccEEEecCCC--CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCC
Confidence 46888875322 36799999999999999999999999999999999999999999998764
No 42
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.84 E-value=1.5e-08 Score=76.19 Aligned_cols=64 Identities=38% Similarity=0.436 Sum_probs=55.3
Q ss_pred ccccCcEEecccccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Q psy5022 294 QEIFGDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSV 357 (359)
Q Consensus 294 ~~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~ 357 (359)
...|||.+........+.+|..|.++|||+++||++||+|++|||.++.+++++++.+.++.+.
T Consensus 11 ~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~ 74 (82)
T cd00992 11 GGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSG 74 (82)
T ss_pred CCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCC
Confidence 5678999886433234689999999999999999999999999999999999999999998754
No 43
>KOG3553|consensus
Probab=98.79 E-value=5.8e-09 Score=79.01 Aligned_cols=61 Identities=20% Similarity=0.316 Sum_probs=52.3
Q ss_pred ccCcEEecccc----------cccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 296 IFGDELQMFAK----------KELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 296 ~~G~~~~~~~~----------~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
.+||.+.++.+ .+.+.||.+|.+||||+.+|||.+|.|+.+||..++-++|++++..|+.+
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k~ 106 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITKE 106 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhHh
Confidence 35777766543 23467999999999999999999999999999999999999999998864
No 44
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.68 E-value=9e-08 Score=72.26 Aligned_cols=67 Identities=25% Similarity=0.361 Sum_probs=52.4
Q ss_pred ccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCcc
Q psy5022 216 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEMD 286 (359)
Q Consensus 216 ~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~~ 286 (359)
.||+.+..... ..+++|..|.++|||+++| |++||+|++|||.++.+ .+.....++.+++++.|+.+
T Consensus 2 ~lGv~~~~~~~---~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 74 (82)
T PF13180_consen 2 GLGVTVQNLSD---TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLRDGE 74 (82)
T ss_dssp E-SEEEEECSC---SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEETTE
T ss_pred EECeEEEEccC---CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 57877764221 3478999999999999999 99999999999999855 44455678899999998754
No 45
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.62 E-value=1.2e-07 Score=71.90 Aligned_cols=60 Identities=30% Similarity=0.452 Sum_probs=50.4
Q ss_pred ccCcEEecccccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccC
Q psy5022 296 IFGDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVG 358 (359)
Q Consensus 296 ~~G~~~~~~~~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~g 358 (359)
++|+.+.. ...+.+|..|.++|||+++||++||+|++|||.++.++++.++..+++...|
T Consensus 3 ~lG~~~~~---~~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~ 62 (85)
T cd00988 3 GIGLELKY---DDGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAG 62 (85)
T ss_pred EEEEEEEE---cCCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCC
Confidence 45777653 2246789999999999999999999999999999999988999988876544
No 46
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.59 E-value=2.6e-07 Score=69.57 Aligned_cols=62 Identities=27% Similarity=0.344 Sum_probs=52.6
Q ss_pred cccCcEEecccccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 295 EIFGDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 295 ~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
..+|+.+........+.+|..|.++|||+++||++||+|++|||+++.++++.+...+++.+
T Consensus 12 ~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~ 73 (85)
T smart00228 12 GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKA 73 (85)
T ss_pred CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 67788887543222478999999999999999999999999999999999999888888764
No 47
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.59 E-value=1.1e-07 Score=71.83 Aligned_cols=56 Identities=27% Similarity=0.421 Sum_probs=43.9
Q ss_pred ccCcEEecccccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy5022 296 IFGDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLA 354 (359)
Q Consensus 296 ~~G~~~~~~~~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~ 354 (359)
.+|+.+..... ..+.+|.+|.++|||+++||++||+|++|||.++.+ ..++.+.+.
T Consensus 2 ~lGv~~~~~~~-~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~ 57 (82)
T PF13180_consen 2 GLGVTVQNLSD-TGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNS--SEDLVNILS 57 (82)
T ss_dssp E-SEEEEECSC-SSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSS--HHHHHHHHH
T ss_pred EECeEEEEccC-CCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCC--HHHHHHHHH
Confidence 35666664322 236789999999999999999999999999999965 588888885
No 48
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.58 E-value=4e-07 Score=68.26 Aligned_cols=74 Identities=30% Similarity=0.438 Sum_probs=55.2
Q ss_pred EEEEeeCCCCCccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHH--H---HHHhhcCC-CeEE
Q psy5022 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV--A---YMEFLKAN-GIED 278 (359)
Q Consensus 205 ~~v~l~r~~~~~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~--~---~~~~~~~~-~~v~ 278 (359)
+++.+.+.....||+.+.+... ...+++|..+.++|||+++| |++||+|++|||.++. + +...++.. ..++
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~--~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~ 78 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKD--SGGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVT 78 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCccc--CCCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEE
Confidence 4577888766799999985321 13478999999999999999 9999999999999987 3 44444432 2455
Q ss_pred EEE
Q psy5022 279 HSF 281 (359)
Q Consensus 279 l~v 281 (359)
+.+
T Consensus 79 l~v 81 (82)
T cd00992 79 LTV 81 (82)
T ss_pred EEE
Confidence 543
No 49
>KOG3550|consensus
Probab=98.52 E-value=3.4e-07 Score=74.83 Aligned_cols=77 Identities=34% Similarity=0.480 Sum_probs=60.2
Q ss_pred ccEEEEeeCCCCCccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH-----HHHhhc-CCCe
Q psy5022 203 LQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-----YMEFLK-ANGI 276 (359)
Q Consensus 203 ~~~~v~l~r~~~~~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~-----~~~~~~-~~~~ 276 (359)
..+-|.|.|.. ++|||.+.++. ....+++|+.|+||+.|++-|.|+.||.+++|||.++.+ .+..++ ..+.
T Consensus 90 hprvvelpktd-eglgfnvmggk--eqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gs 166 (207)
T KOG3550|consen 90 HPRVVELPKTD-EGLGFNVMGGK--EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGS 166 (207)
T ss_pred CCceeecCccc-cccceeeccCc--ccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCc
Confidence 45778888874 69999998653 233578999999999999999999999999999999987 333333 1235
Q ss_pred EEEEEE
Q psy5022 277 EDHSFV 282 (359)
Q Consensus 277 v~l~v~ 282 (359)
|.|.|.
T Consensus 167 vklvvr 172 (207)
T KOG3550|consen 167 VKLVVR 172 (207)
T ss_pred EEEEEe
Confidence 778775
No 50
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.46 E-value=1.5e-06 Score=65.34 Aligned_cols=75 Identities=31% Similarity=0.426 Sum_probs=55.3
Q ss_pred EEEeeCCCCCccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH-----HHHhh-cCCCeEEE
Q psy5022 206 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-----YMEFL-KANGIEDH 279 (359)
Q Consensus 206 ~v~l~r~~~~~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~-----~~~~~-~~~~~v~l 279 (359)
++.+.+.. ..+|+.+..... ...+++|..|.++|||+++| |++||+|++|||..+.+ ....+ ..+..+.+
T Consensus 4 ~~~~~~~~-~~~G~~~~~~~~--~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l 79 (85)
T smart00228 4 LVELEKGG-GGLGFSLVGGKD--EGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTL 79 (85)
T ss_pred EEEEEECC-CcccEEEECCCC--CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence 56777776 689999875321 11579999999999999999 99999999999998865 22222 22346777
Q ss_pred EEEeC
Q psy5022 280 SFVKE 284 (359)
Q Consensus 280 ~v~~~ 284 (359)
.+.+.
T Consensus 80 ~i~r~ 84 (85)
T smart00228 80 TVLRG 84 (85)
T ss_pred EEEeC
Confidence 77653
No 51
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.39 E-value=1.3e-06 Score=63.44 Aligned_cols=61 Identities=33% Similarity=0.417 Sum_probs=46.1
Q ss_pred ccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH-----HHHhhcC--CCeEEEEE
Q psy5022 216 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-----YMEFLKA--NGIEDHSF 281 (359)
Q Consensus 216 ~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~-----~~~~~~~--~~~v~l~v 281 (359)
.+||.+..... .+++|..+.++|||+.+| |++||+|++|||.++.+ +.+.++. +..++|.+
T Consensus 2 ~~G~~~~~~~~----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCC----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 57888874321 478999999999999999 99999999999999865 3333332 35677654
No 52
>KOG1930|consensus
Probab=98.36 E-value=1.1e-06 Score=82.99 Aligned_cols=112 Identities=17% Similarity=0.200 Sum_probs=76.2
Q ss_pred CcCCCCcEEEEeeeEEEEeccCCChhhHHHHHHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccceee-cccccee
Q psy5022 23 TGLGPGTLFRLKFLGSVQVDEDDPKCCKRRVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMM-DHALRTI 101 (359)
Q Consensus 23 ~~l~~gv~f~~kylGs~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~-~~~l~~I 101 (359)
+.|..|-.-.+-||||++|+...|...++.+.. .+.+ .......+.|...||.+||++.|..-+.... ++++..|
T Consensus 339 ~LLkqGAACnVlyl~SVd~ESLTG~~av~kAt~--~~~~--~~p~p~~tvVHFKVSsQGITLTDNqRK~FFRRHypv~sv 414 (483)
T KOG1930|consen 339 ALLKQGAACNVLYLGSVDVESLTGNEAVQKATS--SQRA--INPTPRATVVHFKVSSQGITLTDNQRKVFFRRHYPVNSV 414 (483)
T ss_pred HHHhhCccceEEEEeeeeccccccHHHHHHHHH--HHhh--cCCCCCceEEEEEEeccceeeeccchhhheeccccccee
Confidence 457889899999999999988888776543211 1111 1223345799999999999999998876655 5699999
Q ss_pred eeEEecCCceEEe------eecccccccCCCCCCCCCCCcceeeEee
Q psy5022 102 SYIADIGDLVVLM------ARRRFVSQEADEPPKISRTPKMICHVFE 142 (359)
Q Consensus 102 S~~~~~~~~~~~~------~~~~f~~~~~~~~~~~~~~~~~~Chvf~ 142 (359)
.||+-|+.-==|+ ..+.|+|++++. .++.. =.||||.
T Consensus 415 ~Fc~mDPq~R~w~~~g~~~~s~iFgFVAr~~--gS~te--N~CHlFA 457 (483)
T KOG1930|consen 415 IFCGMDPQERRWTNTGCGAQSKIFGFVARKP--GSSTE--NVCHLFA 457 (483)
T ss_pred EEecCChHHhccccCCCCCcceEEEEEeccC--CCCcc--cceeeee
Confidence 9999442111111 256677776542 22222 3699998
No 53
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.34 E-value=3.5e-06 Score=62.96 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=49.2
Q ss_pred cceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH---HHHhhcCCCeEEEEEEeCc
Q psy5022 217 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA---YMEFLKANGIEDHSFVKEM 285 (359)
Q Consensus 217 lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~---~~~~~~~~~~v~l~v~~~~ 285 (359)
+|+.+... ..+++|..|.++|||+++| |++||+|++|||.++.+ +++.+..+..+.+.+.|+.
T Consensus 3 ~G~~~~~~-----~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~~~~~l~~~~~~~~v~l~v~r~g 68 (80)
T cd00990 3 LGLTLDKE-----EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDALQDRLKEYQAGDPVELTVFRDD 68 (80)
T ss_pred ccEEEEcc-----CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHHHHHHHHhcCCCCEEEEEEEECC
Confidence 56666421 2368899999999999999 99999999999999986 5555555667888877653
No 54
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.30 E-value=1.8e-06 Score=64.68 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=41.0
Q ss_pred cCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 309 LQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 309 ~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
.+..|.+|.++|||+++||++||+|++|||.++.+ ++++...|...
T Consensus 10 ~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~--~~d~~~~l~~~ 55 (79)
T cd00991 10 AGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITT--LEDFMEALKPT 55 (79)
T ss_pred CcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCC--HHHHHHHHhcC
Confidence 36789999999999999999999999999999985 58888888764
No 55
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.26 E-value=2.4e-06 Score=63.57 Aligned_cols=46 Identities=26% Similarity=0.497 Sum_probs=40.6
Q ss_pred CcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Q psy5022 310 QKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSV 357 (359)
Q Consensus 310 ~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~ 357 (359)
+..|.+|.++|+|+++||++||+|++|||.++.+ ++++...++...
T Consensus 13 ~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~--~~~~~~~l~~~~ 58 (79)
T cd00989 13 EPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKS--WEDLVDAVQENP 58 (79)
T ss_pred CcEEEeECCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHHCC
Confidence 4689999999999999999999999999999986 478888887653
No 56
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.24 E-value=3.9e-06 Score=62.82 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=43.8
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCc
Q psy5022 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEM 285 (359)
Q Consensus 231 ~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~ 285 (359)
.+++|..|.++|||+++| |++||+|++|||.++.+ .+.....+..+.+.+.|+.
T Consensus 10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~~~d~~~~l~~~~~g~~v~l~v~r~g 69 (79)
T cd00991 10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITTLEDFMEALKPTKPGEVITVTVLPST 69 (79)
T ss_pred CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCCHHHHHHHHhcCCCCCEEEEEEEECC
Confidence 478899999999999999 99999999999998876 3333334567888887754
No 57
>KOG3551|consensus
Probab=98.20 E-value=1.2e-06 Score=81.99 Aligned_cols=65 Identities=17% Similarity=0.316 Sum_probs=59.8
Q ss_pred ccccccCcEEecccccccCcEEEEEcCCChhhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 292 NSQEIFGDELQMFAKKELQKEICSLLRGGIAERGG-VRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 292 ~~~~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
.+.+++|+++.++.+...++.|+.|.+|=+|++.+ |..||.|++|||.++.+.+|+++|+.||.+
T Consensus 93 ~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKra 158 (506)
T KOG3551|consen 93 QDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRA 158 (506)
T ss_pred ecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhh
Confidence 35678999999998888899999999999999965 999999999999999999999999999965
No 58
>KOG3549|consensus
Probab=98.19 E-value=1.4e-06 Score=80.46 Aligned_cols=64 Identities=28% Similarity=0.407 Sum_probs=59.5
Q ss_pred cccccCcEEecccccccCcEEEEEcCCChhhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 293 SQEIFGDELQMFAKKELQKEICSLLRGGIAERGG-VRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 293 ~~~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
..++||+++.++.+-+.|.+|+.|.++-+|+..| |-+||-|+.|||+.|++.+|+++|++||++
T Consensus 64 ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNA 128 (505)
T KOG3549|consen 64 KVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNA 128 (505)
T ss_pred ecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhc
Confidence 4678999999998888899999999999999965 999999999999999999999999999975
No 59
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.05 E-value=1.7e-05 Score=59.83 Aligned_cols=63 Identities=24% Similarity=0.389 Sum_probs=47.8
Q ss_pred ccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH-----HHHhh--cCCCeEEEEEEeC
Q psy5022 216 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-----YMEFL--KANGIEDHSFVKE 284 (359)
Q Consensus 216 ~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~-----~~~~~--~~~~~v~l~v~~~ 284 (359)
+||+.+... ..+++|..+.++|||+++| |++||+|++|||.++.+ +...+ ..+..+.+.+.+.
T Consensus 3 ~lG~~~~~~-----~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 3 GIGLELKYD-----DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred EEEEEEEEc-----CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 578777632 2468999999999999999 99999999999988754 33333 2355677877765
No 60
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.02 E-value=1.5e-05 Score=59.20 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=42.2
Q ss_pred CCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCc
Q psy5022 230 LPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEM 285 (359)
Q Consensus 230 ~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~ 285 (359)
...++|..+.++|||+++| |++||+|++|||.++.+ .+... .+..+.+.+.|+.
T Consensus 11 ~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~l~~~-~~~~~~l~v~r~~ 70 (79)
T cd00989 11 PIEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSWEDLVDAVQEN-PGKPLTLTVERNG 70 (79)
T ss_pred ccCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHHC-CCceEEEEEEECC
Confidence 3457899999999999999 99999999999999866 23332 2456778777653
No 61
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.01 E-value=1.2e-05 Score=59.97 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=39.0
Q ss_pred cCcEEecccccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHH
Q psy5022 297 FGDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVN 351 (359)
Q Consensus 297 ~G~~~~~~~~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~ 351 (359)
+|+.+.. .+.+..|.+|.++|||+++||++||+|++|||.++.+ +.+++.
T Consensus 3 ~G~~~~~---~~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~--~~~~l~ 52 (80)
T cd00990 3 LGLTLDK---EEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDA--LQDRLK 52 (80)
T ss_pred ccEEEEc---cCCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHH--HHHHHH
Confidence 4666642 1235789999999999999999999999999999976 344443
No 62
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.97 E-value=1.7e-05 Score=59.19 Aligned_cols=43 Identities=16% Similarity=0.363 Sum_probs=38.0
Q ss_pred CcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy5022 310 QKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLAT 355 (359)
Q Consensus 310 ~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~ 355 (359)
+..|..|.++|||+. +|++||+|++|||.++.+ ++++..+++.
T Consensus 9 Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~--~~~~~~~l~~ 51 (79)
T cd00986 9 GVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKE--AEELIDYIQS 51 (79)
T ss_pred CEEEEEECCCCchhh-CCCCCCEEEEECCEECCC--HHHHHHHHHh
Confidence 578999999999997 699999999999999975 5788888875
No 63
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.97 E-value=1.7e-05 Score=77.43 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=44.2
Q ss_pred CcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccC
Q psy5022 310 QKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVG 358 (359)
Q Consensus 310 ~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~g 358 (359)
+..|..|.++|||+++||++||+|++|||+++.+++..++..+|+...|
T Consensus 103 g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g 151 (389)
T PLN00049 103 GLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEG 151 (389)
T ss_pred cEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence 5689999999999999999999999999999999988898888876544
No 64
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.97 E-value=2.3e-05 Score=59.73 Aligned_cols=54 Identities=30% Similarity=0.435 Sum_probs=43.5
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCc
Q psy5022 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEM 285 (359)
Q Consensus 231 ~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~ 285 (359)
.+++|..|.++|||+++| |++||.|++|||.++.+ .+.....+..+.+.+.|+.
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~~~~~~~l~~~~~~~~i~l~v~r~g 83 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVADLRRALAELKPGDKVTLTVLRGG 83 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 368899999999999999 99999999999998865 3333334567888887654
No 65
>KOG3553|consensus
Probab=97.96 E-value=1.1e-05 Score=61.31 Aligned_cols=49 Identities=27% Similarity=0.393 Sum_probs=39.5
Q ss_pred ccceEEEec--------CCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHH
Q psy5022 216 ILGVVIVES--------GWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265 (359)
Q Consensus 216 ~lG~~i~~~--------~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~ 265 (359)
.+||.|-++ +++-...+++|..|..||||+.+| |+.+|.|+++||-+..
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfT 92 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFT 92 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeE
Confidence 467777543 344344689999999999999999 9999999999997643
No 66
>KOG1892|consensus
Probab=97.96 E-value=2.3e-05 Score=80.75 Aligned_cols=78 Identities=26% Similarity=0.406 Sum_probs=61.2
Q ss_pred cEEEEeeCCCCCccceEEEec-CCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH-----HHH-hhcCCCe
Q psy5022 204 QKEVVVPKAKGEILGVVIVES-GWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-----YME-FLKANGI 276 (359)
Q Consensus 204 ~~~v~l~r~~~~~lG~~i~~~-~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~-----~~~-~~~~~~~ 276 (359)
...|+|.|+ + ++|++|+.. +.|-...+++|..|.+|++|+..|+|+.||.+++|||.++.+ .-+ ..+.+..
T Consensus 934 i~~vtL~Kn-n-GmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~v 1011 (1629)
T KOG1892|consen 934 IITVTLKKN-N-GMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNV 1011 (1629)
T ss_pred eEEEEEecc-C-CceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCCe
Confidence 456889888 3 799998642 455566799999999999999999999999999999999887 111 1234567
Q ss_pred EEEEEEe
Q psy5022 277 EDHSFVK 283 (359)
Q Consensus 277 v~l~v~~ 283 (359)
|+|.|..
T Consensus 1012 V~leVaK 1018 (1629)
T KOG1892|consen 1012 VHLEVAK 1018 (1629)
T ss_pred EEEehhh
Confidence 8888763
No 67
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.95 E-value=1.5e-05 Score=76.42 Aligned_cols=61 Identities=31% Similarity=0.477 Sum_probs=49.4
Q ss_pred cccCcEEecccccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccC
Q psy5022 295 EIFGDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVG 358 (359)
Q Consensus 295 ~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~g 358 (359)
.++|+.+.. ...+..|..|.++|||+++||++||+|++|||+++.+++..++..+++...|
T Consensus 51 ~~lG~~~~~---~~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g 111 (334)
T TIGR00225 51 EGIGIQVGM---DDGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKG 111 (334)
T ss_pred EEEEEEEEE---ECCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCC
Confidence 346766652 1225789999999999999999999999999999999888888888866544
No 68
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.95 E-value=2.4e-05 Score=58.35 Aligned_cols=52 Identities=27% Similarity=0.354 Sum_probs=41.8
Q ss_pred cEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCc
Q psy5022 232 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEM 285 (359)
Q Consensus 232 ~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~ 285 (359)
+++|..|.++|||+. | |++||.|++|||.++.+ .+.....+..+.+.+.|+.
T Consensus 9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~~~~~~~~l~~~~~~~~v~l~v~r~g 66 (79)
T cd00986 9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKEAEELIDYIQSKKEGDTVKLKVKREE 66 (79)
T ss_pred CEEEEEECCCCchhh-C-CCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEECC
Confidence 578899999999986 8 99999999999998875 3333345667888887754
No 69
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.93 E-value=2.4e-05 Score=59.55 Aligned_cols=45 Identities=24% Similarity=0.359 Sum_probs=39.3
Q ss_pred CcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 310 QKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 310 ~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
+.+|..|.++|||+++||++||+|++|||.++.++ .++.+.+...
T Consensus 25 g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~--~~~~~~l~~~ 69 (90)
T cd00987 25 GVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSV--ADLRRALAEL 69 (90)
T ss_pred EEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCH--HHHHHHHHhc
Confidence 57899999999999999999999999999999864 6777777654
No 70
>KOG3651|consensus
Probab=97.88 E-value=3.5e-05 Score=70.19 Aligned_cols=59 Identities=29% Similarity=0.497 Sum_probs=51.3
Q ss_pred EEEeeCCCCCccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH
Q psy5022 206 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA 266 (359)
Q Consensus 206 ~v~l~r~~~~~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~ 266 (359)
.|.|.|+....+|++|-+|. ..-|.++|..|..++||++.|+++.||.|++|||.++.+
T Consensus 7 ~v~ltKD~~nliGISIGGGa--pyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKG 65 (429)
T KOG3651|consen 7 TVELTKDEKNLIGISIGGGA--PYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKG 65 (429)
T ss_pred cEEEeeccccceeEEecCCC--CcCCeEEEEEeccCCchhccCccccCCeeEEecceeecC
Confidence 58899998889999997542 233678999999999999999999999999999999988
No 71
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.87 E-value=2.7e-05 Score=76.21 Aligned_cols=62 Identities=31% Similarity=0.385 Sum_probs=52.3
Q ss_pred cccCcEEecccccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccC
Q psy5022 295 EIFGDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVG 358 (359)
Q Consensus 295 ~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~g 358 (359)
.+.|..+..... ....|.+..+++||+++||++||+|++|||.++.+++.++++..|+..+|
T Consensus 100 ~GiG~~i~~~~~--~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~G 161 (406)
T COG0793 100 GGIGIELQMEDI--GGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPG 161 (406)
T ss_pred cceeEEEEEecC--CCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCC
Confidence 455666654211 46789999999999999999999999999999999999999999998776
No 72
>KOG3938|consensus
Probab=97.85 E-value=1.6e-05 Score=71.11 Aligned_cols=126 Identities=25% Similarity=0.350 Sum_probs=95.7
Q ss_pred hhhHHhhcchhhHHHHHHHHHhcCCCCcccccchhhhhhhcccccccchhhhhhcccccEEEEeeCCCCCccceEEEecC
Q psy5022 146 AQFIAQSIGQAFQVAYMEFLKANGIEDHSFVKEMDYQEVLNSQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVIVESG 225 (359)
Q Consensus 146 a~~i~~~ig~af~~ay~~~L~~~gi~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~l~r~~~~~lG~~i~~~~ 225 (359)
.+++.+.|+.||.+.-.+.|-.. ++. ...+...++..+.-+.+.+..... ...++|.+.|... .||++|...+
T Consensus 75 v~ELY~kIAe~F~Is~~dIlfcT-lNs----hKvDM~~llgGqigleDfiFAHvk-Gq~kEv~v~Ksed-alGlTITDNG 147 (334)
T KOG3938|consen 75 VRELYQKIAEAFDISPDDILFCT-LNS----HKVDMKRLLGGQIGLEDFIFAHVK-GQAKEVEVVKSED-ALGLTITDNG 147 (334)
T ss_pred HHHHHHHHHHHhcCCccceEEEe-cCC----CcccHHHHhcCccChhhhhhhhhc-CcceeEEEEeccc-ccceEEeeCC
Confidence 78899999999999988877433 111 122556666666666555443332 3456899999965 9999999765
Q ss_pred CCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH--------HHHhhcCCCeEEEEEE
Q psy5022 226 WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA--------YMEFLKANGIEDHSFV 282 (359)
Q Consensus 226 ~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~--------~~~~~~~~~~v~l~v~ 282 (359)
.| -.||..|.++|..++--.+++||.|-+|||+++.+ +++.++.+...++.+.
T Consensus 148 ~G----yAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLi 208 (334)
T KOG3938|consen 148 AG----YAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLI 208 (334)
T ss_pred cc----eeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEee
Confidence 54 56999999999999988899999999999999988 6788888877777665
No 73
>KOG3549|consensus
Probab=97.83 E-value=2.7e-05 Score=72.12 Aligned_cols=78 Identities=27% Similarity=0.336 Sum_probs=64.4
Q ss_pred ccEEEEeeCCCCCccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH-----HHHhhcC-CCe
Q psy5022 203 LQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-----YMEFLKA-NGI 276 (359)
Q Consensus 203 ~~~~v~l~r~~~~~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~-----~~~~~~~-~~~ 276 (359)
+.|+|+|.|..-++||++|.+|. .-.-+++|+.|...-.|+..|.|-+||-|++|||..+.. ++..+++ |+.
T Consensus 54 ~eRtVtirRQ~vGGlGLSIKGGa--EHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGde 131 (505)
T KOG3549|consen 54 KERTVTIRRQKVGGLGLSIKGGA--EHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDE 131 (505)
T ss_pred CceeEEEEeeecCcceeeecccc--ccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCE
Confidence 45789999988789999999643 122467899999999999999999999999999998877 6666664 567
Q ss_pred EEEEEE
Q psy5022 277 EDHSFV 282 (359)
Q Consensus 277 v~l~v~ 282 (359)
|+|+|.
T Consensus 132 VtlTV~ 137 (505)
T KOG3549|consen 132 VTLTVK 137 (505)
T ss_pred EEEEeH
Confidence 888885
No 74
>KOG3606|consensus
Probab=97.80 E-value=4.3e-05 Score=68.55 Aligned_cols=99 Identities=22% Similarity=0.348 Sum_probs=68.6
Q ss_pred cccccEEEEeeCCC-CCccceEEEec------CCCC-cCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH----H
Q psy5022 200 KKELQKEVVVPKAK-GEILGVVIVES------GWGS-MLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA----Y 267 (359)
Q Consensus 200 ~~~~~~~v~l~r~~-~~~lG~~i~~~------~~g~-~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~----~ 267 (359)
-++..|.|.|.|-. ..+|||-|..+ +.|. ..+++||+...||+.|+..|.|-+.|++++|||..|.+ -
T Consensus 155 vPEtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQ 234 (358)
T KOG3606|consen 155 VPETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQ 234 (358)
T ss_pred cchhhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHH
Confidence 34555668888753 46899999764 3554 34899999999999999999999999999999999887 1
Q ss_pred HHh--hcCCCeEEEEEEeCcceEEeeccccccC
Q psy5022 268 MEF--LKANGIEDHSFVKEMDYQEVLNSQEIFG 298 (359)
Q Consensus 268 ~~~--~~~~~~v~l~v~~~~~~~~~~~~~~~~G 298 (359)
++. ..+...+.++|.+..+...+.+....||
T Consensus 235 VTDMMvANshNLIiTVkPANQRnnvvr~~~~~~ 267 (358)
T KOG3606|consen 235 VTDMMVANSHNLIITVKPANQRNNVVRGRRSFG 267 (358)
T ss_pred HHHHHhhcccceEEEecccccccceeecccccc
Confidence 111 1122346677776655444444444433
No 75
>KOG3551|consensus
Probab=97.79 E-value=3.5e-05 Score=72.37 Aligned_cols=77 Identities=27% Similarity=0.264 Sum_probs=62.5
Q ss_pred cEEEEeeCCCCCccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH-----HHHhhc-CCCeE
Q psy5022 204 QKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-----YMEFLK-ANGIE 277 (359)
Q Consensus 204 ~~~v~l~r~~~~~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~-----~~~~~~-~~~~v 277 (359)
.|.|.+.|...++||++|.++.- ..-+++|+.|.+|-.|++.+-|..||.|++|||.++.+ .++.++ .++.|
T Consensus 85 ~R~V~V~K~d~gGLGISIKGGre--NkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV 162 (506)
T KOG3551|consen 85 ERRVRVVKQDAGGLGISIKGGRE--NKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEV 162 (506)
T ss_pred cceeEEEEecCCcceEEeecCcc--cCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCcee
Confidence 46789999888899999996431 22467899999999999999999999999999999987 566654 56667
Q ss_pred EEEEE
Q psy5022 278 DHSFV 282 (359)
Q Consensus 278 ~l~v~ 282 (359)
.+.|.
T Consensus 163 ~levK 167 (506)
T KOG3551|consen 163 LLEVK 167 (506)
T ss_pred eeeee
Confidence 77665
No 76
>KOG3571|consensus
Probab=97.79 E-value=2.6e-05 Score=75.51 Aligned_cols=64 Identities=19% Similarity=0.341 Sum_probs=55.3
Q ss_pred ccccCcEEeccc--ccccCcEEEEEcCCChhhc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Q psy5022 294 QEIFGDELQMFA--KKELQKEICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSV 357 (359)
Q Consensus 294 ~~~~G~~~~~~~--~~~~~~~I~~v~~gs~A~~-~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~ 357 (359)
-.-||+++.+.. ..+.++||.+|++||+.+. +++.+||.||.||.+++.+++-+++|+.|+..+
T Consensus 260 vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV 326 (626)
T KOG3571|consen 260 VNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAV 326 (626)
T ss_pred cccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHh
Confidence 345799998743 3456789999999999888 779999999999999999999999999999765
No 77
>KOG3651|consensus
Probab=97.78 E-value=4.6e-05 Score=69.38 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=56.2
Q ss_pred cccCcEEecccccccCcEEEEEcCCChhhc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCC
Q psy5022 295 EIFGDELQMFAKKELQKEICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359 (359)
Q Consensus 295 ~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~-~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~g~ 359 (359)
.-.|+++.|+...-...||..|..++||++ +.++.||.|++|||.+|.+.+-.++.++|+.+.++
T Consensus 16 nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~e 81 (429)
T KOG3651|consen 16 NLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNE 81 (429)
T ss_pred cceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccc
Confidence 445889887755544569999999999999 66999999999999999999999999999988764
No 78
>KOG0507|consensus
Probab=97.69 E-value=3.4e-06 Score=85.22 Aligned_cols=130 Identities=17% Similarity=0.148 Sum_probs=95.7
Q ss_pred CCcEEEE-eeeEEEEeccCCChhhHHHH-HHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccceeeccccceeeeE
Q psy5022 27 PGTLFRL-KFLGSVQVDEDDPKCCKRRV-KKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYI 104 (359)
Q Consensus 27 ~gv~f~~-kylGs~~V~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~ 104 (359)
.-+.|.. -|+|++.+.+.+++..++-+ -++-.+..+..-..++...+.+.++.+|.+.+|++..+.+..|.++|+|+.
T Consensus 505 ~~~~~~d~ty~nsm~i~dlr~t~ltedaeaklg~n~~~slevrk~v~ti~~s~tYkGst~Ld~d~~~~i~e~e~~ra~ca 584 (854)
T KOG0507|consen 505 ASCQYPDKTYLNSMLIKDLRGTELTEDAEAKLGLNQSKSLEVRKKVPTIILSLTYKGSTFLDADNKNRIAEHEIRRASCA 584 (854)
T ss_pred hhhccchhhhhcchhhhhcccccccchhhhhccccccchHHHHhhccchhhheeecCccccchhcccCCCCCCCCccccc
Confidence 3377888 59999999888887776532 222111111100111123457899999999999999999999999999998
Q ss_pred EecCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc---hhhHHhhcchhhHHHHHHHHH
Q psy5022 105 ADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE---AQFIAQSIGQAFQVAYMEFLK 166 (359)
Q Consensus 105 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~---a~~i~~~ig~af~~ay~~~L~ 166 (359)
+.+.. +--.|.|+ +++-..+.++||+|+-.+ +.++..|++|+|.++|+.-++
T Consensus 585 sp~m~-----ds~~s~~~-----tk~l~~qh~yg~~~ed~sv~l~~~ei~T~~q~~s~e~~~~~q 639 (854)
T KOG0507|consen 585 SPDME-----DSTTSAYI-----TKDLANQHHYGHVFEDFSVNLIYEEILTLGQAFSVEYQLALQ 639 (854)
T ss_pred CCCch-----hhhHHHHH-----HHhhccccccccccccccccccchhhhhcccccccccchhhh
Confidence 85543 45577888 566677888999999655 888999999999999988775
No 79
>cd01217 CG12581 CG12581 Phosphotyrosine-binding (PTB) domain. CG12581 Phosphotyrosine-binding (PTB) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=97.67 E-value=0.00054 Score=56.04 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=45.6
Q ss_pred EEEEeeeEEEEeccCC-ChhhHHHHHHHH-HHHhCCCCCCCCCcEEEEEEECCeeEEEeCCcc--ceeeccccceeeeEE
Q psy5022 30 LFRLKFLGSVQVDEDD-PKCCKRRVKKVM-VEEAAPEGETQPSTEVDLFISTEKIMVLNTDLK--EIMMDHALRTISYIA 105 (359)
Q Consensus 30 ~f~~kylGs~~V~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~--~~~~~~~l~~IS~~~ 105 (359)
.|.|.||||+...... +-.-.+.-.+++ ..+..+. .+...-.|.|+..|+++-..... .--.-+|+++|-|||
T Consensus 3 ~f~V~yLGS~pl~dk~~sLqgiQEPLr~LY~se~~~~---kKl~~gsL~Ics~GLrvk~s~~~~~~E~~~fP~~~i~~~a 79 (158)
T cd01217 3 RCRVLYLGSLVPKDKKDGLQGIQEPLRQLYPSEVTPK---KKGIDSWLSVWSNGLLLEISALAEKNETLFFPIHNLHYCA 79 (158)
T ss_pred eEEEEEEcCcCCccccchhhhhhhHHHHhhhhccccc---cccccceEEEecCceEEEeccccccccccccccceeeEee
Confidence 5999999999874422 222233332332 1122112 22345569999999999876542 222458999999999
Q ss_pred e
Q psy5022 106 D 106 (359)
Q Consensus 106 ~ 106 (359)
.
T Consensus 80 A 80 (158)
T cd01217 80 A 80 (158)
T ss_pred E
Confidence 6
No 80
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.63 E-value=0.00013 Score=67.15 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=47.6
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCcc
Q psy5022 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEMD 286 (359)
Q Consensus 231 ~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~~ 286 (359)
.+..|..+.+++||+++| |+.||+|++|||.++.+ ++..++.++.+++++.|+..
T Consensus 191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R~G~ 251 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDPEQAFQALQMLREETNLTLTVERDGQ 251 (259)
T ss_pred eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEECCE
Confidence 477888899999999999 99999999999999976 56666777789999998754
No 81
>KOG1892|consensus
Probab=97.61 E-value=8.8e-05 Score=76.67 Aligned_cols=66 Identities=18% Similarity=0.453 Sum_probs=55.1
Q ss_pred eccccccCcEEec---ccccccCcEEEEEcCCChhhc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 291 LNSQEIFGDELQM---FAKKELQKEICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 291 ~~~~~~~G~~~~~---~~~~~~~~~I~~v~~gs~A~~-~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
++...++|+++.. ......|+||++|++||+|+. ++|..||+++.|||+++.+++.+.+.+++..+
T Consensus 939 L~KnnGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrt 1008 (1629)
T KOG1892|consen 939 LKKNNGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRT 1008 (1629)
T ss_pred EeccCCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhcc
Confidence 3455888888753 223456889999999999998 77999999999999999999999999988754
No 82
>KOG3542|consensus
Probab=97.59 E-value=3.7e-05 Score=76.79 Aligned_cols=64 Identities=20% Similarity=0.300 Sum_probs=58.2
Q ss_pred ccccCcEEecccccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Q psy5022 294 QEIFGDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSV 357 (359)
Q Consensus 294 ~~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~ 357 (359)
...+-|.+.++.+...+.||.+|.||+.|++.||+.||+|++|||++..+++...+.++|+++.
T Consensus 547 e~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLrnnt 610 (1283)
T KOG3542|consen 547 EDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILRNNT 610 (1283)
T ss_pred cCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhcCCc
Confidence 3567788888887777899999999999999999999999999999999999999999999864
No 83
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.56 E-value=0.00015 Score=66.81 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=44.2
Q ss_pred cCcEEecccccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 297 FGDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 297 ~G~~~~~~~~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
+|+..........|..|..+.++++|+++||++||+|++|||+++.++ +++.+++.+.
T Consensus 179 lgi~p~~~~g~~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~--~~~~~~l~~~ 236 (259)
T TIGR01713 179 IRLSPVMKNDKLEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDP--EQAFQALQML 236 (259)
T ss_pred EeEEEEEeCCceeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhc
Confidence 455543222222467889999999999999999999999999999874 7777777653
No 84
>KOG3606|consensus
Probab=97.53 E-value=0.00016 Score=64.99 Aligned_cols=63 Identities=21% Similarity=0.344 Sum_probs=51.5
Q ss_pred ccccCcEEecccc---------cccCcEEEEEcCCChhhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 294 QEIFGDELQMFAK---------KELQKEICSLLRGGIAERGG-VRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 294 ~~~~G~~~~~~~~---------~~~~~~I~~v~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
.+.+||.++.+.. ...++||+++.+||-|+..| |-+.|.+++|||+.|.+.+.+++.+|+-++
T Consensus 170 ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvAN 242 (358)
T KOG3606|consen 170 EKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVAN 242 (358)
T ss_pred CCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhc
Confidence 3556777765431 22367999999999999977 899999999999999999999999987653
No 85
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.51 E-value=0.00014 Score=75.12 Aligned_cols=61 Identities=30% Similarity=0.418 Sum_probs=48.0
Q ss_pred cccCcEEecccccccCcEEEEEcCCChhhcC-CCCCCCEEEEEC--C---EECCCCCHHHHHHHHHhccC
Q psy5022 295 EIFGDELQMFAKKELQKEICSLLRGGIAERG-GVRVGHRIIEIN--N---QSVVAVPHEKIVNLLATSVG 358 (359)
Q Consensus 295 ~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~~-gL~~GD~Il~IN--g---~~v~~~~~~~~v~~l~~s~g 358 (359)
.+.|..+... ....+|.+|.+||||+++ ||++||+|++|| | .++.+++.++++++|+..+|
T Consensus 244 ~GIGa~l~~~---~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~G 310 (667)
T PRK11186 244 EGIGAVLQMD---DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKG 310 (667)
T ss_pred eEEEEEEEEe---CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCC
Confidence 3456665431 224688999999999996 999999999999 4 36678889999999997665
No 86
>KOG0609|consensus
Probab=97.47 E-value=0.00022 Score=70.10 Aligned_cols=77 Identities=31% Similarity=0.457 Sum_probs=63.2
Q ss_pred cccEEEEeeCCCCCccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH--------HHHhhcC
Q psy5022 202 ELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA--------YMEFLKA 273 (359)
Q Consensus 202 ~~~~~v~l~r~~~~~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~--------~~~~~~~ 273 (359)
...+-|.+.|+.++.+|.++.... ...++|+.|..|+.+++.|.|+.||.|++|||..+.+ +++.++
T Consensus 121 ~~vriv~i~k~~~eplG~Tik~~e----~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~- 195 (542)
T KOG0609|consen 121 EAVRIVRIVKNTGEPLGATIRVEE----DTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR- 195 (542)
T ss_pred ceeEEEEEeecCCCccceEEEecc----CCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC-
Confidence 446778999998999999998421 1268999999999999999999999999999999887 344443
Q ss_pred CCeEEEEEEeC
Q psy5022 274 NGIEDHSFVKE 284 (359)
Q Consensus 274 ~~~v~l~v~~~ 284 (359)
+.+++.+.+.
T Consensus 196 -G~itfkiiP~ 205 (542)
T KOG0609|consen 196 -GSITFKIIPS 205 (542)
T ss_pred -CcEEEEEccc
Confidence 5799998875
No 87
>PRK10139 serine endoprotease; Provisional
Probab=97.47 E-value=0.00021 Score=71.22 Aligned_cols=45 Identities=18% Similarity=0.300 Sum_probs=40.5
Q ss_pred cCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy5022 309 LQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLAT 355 (359)
Q Consensus 309 ~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~ 355 (359)
.+.+|.+|.++|||+++||++||+|++|||+++.+ ++++...|..
T Consensus 290 ~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s--~~dl~~~l~~ 334 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNS--FAELRSRIAT 334 (455)
T ss_pred CceEEEEECCCChHHHCCCCCCCEEEEECCEECCC--HHHHHHHHHh
Confidence 36789999999999999999999999999999986 4888887765
No 88
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.42 E-value=0.00033 Score=67.10 Aligned_cols=63 Identities=21% Similarity=0.336 Sum_probs=47.7
Q ss_pred ccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH-----HHHhh--cCCCeEEEEEEeC
Q psy5022 216 ILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-----YMEFL--KANGIEDHSFVKE 284 (359)
Q Consensus 216 ~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~-----~~~~~--~~~~~v~l~v~~~ 284 (359)
++|+.+... ..+++|..|.++|||+++| |++||+|++|||.++.+ +...+ ..+..+.+++.|+
T Consensus 52 ~lG~~~~~~-----~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~ 121 (334)
T TIGR00225 52 GIGIQVGMD-----DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRA 121 (334)
T ss_pred EEEEEEEEE-----CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeC
Confidence 577766531 2368899999999999999 99999999999999864 22322 2456788888765
No 89
>KOG3571|consensus
Probab=97.39 E-value=0.00067 Score=66.04 Aligned_cols=81 Identities=22% Similarity=0.238 Sum_probs=61.0
Q ss_pred cccEEEEeeCCCCCccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH-----HHHhhc----
Q psy5022 202 ELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-----YMEFLK---- 272 (359)
Q Consensus 202 ~~~~~v~l~r~~~~~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~-----~~~~~~---- 272 (359)
.+..+|.|.-..-.-||++|++-...-...+++|..|.++++.+..|++.+||.|++||.+...+ +++.++
T Consensus 248 lnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~ 327 (626)
T KOG3571|consen 248 LNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVS 327 (626)
T ss_pred eeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhc
Confidence 34556777766555699999853222224589999999999999999999999999999999887 444333
Q ss_pred CCCeEEEEEE
Q psy5022 273 ANGIEDHSFV 282 (359)
Q Consensus 273 ~~~~v~l~v~ 282 (359)
..+.++|+|.
T Consensus 328 ~~gPi~ltvA 337 (626)
T KOG3571|consen 328 RPGPIKLTVA 337 (626)
T ss_pred cCCCeEEEEe
Confidence 3456888886
No 90
>cd01210 EPS8 Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. EPS8 is a regulator of Rac signaling. It consists of a PTB and an SH3 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=97.37 E-value=0.0016 Score=52.65 Aligned_cols=118 Identities=14% Similarity=0.203 Sum_probs=81.9
Q ss_pred EEEEeeeEEEEeccCCChhhHH-HHHHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccceeeccccceeeeEEecC
Q psy5022 30 LFRLKFLGSVQVDEDDPKCCKR-RVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIG 108 (359)
Q Consensus 30 ~f~~kylGs~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~~~~~ 108 (359)
.|.+.=|=.+.+....+....+ +++++..-++. ++ -..++..|.++.+-|.++|.+|++.+.++|+..|..|...-
T Consensus 3 qy~veHL~Tf~l~~~~~~~~~~D~i~kL~~le~~--G~-iW~Q~m~lqv~~~~v~LlD~etk~elE~fpl~~I~~~~a~~ 79 (127)
T cd01210 3 QYLVEHLATFTVGKQSGVVYPEDAMRKLLQMDKQ--GR-VWSQKMILRVRYQWVTLLDYETKEELESYPLSLIQEPTAFT 79 (127)
T ss_pred eeeeeeeEEEEEcCccCcCCHHHHHHHHHHHHhc--CC-ccccceEEEEcCCeEEEEcCCCcChhhcCCHhhccccceec
Confidence 4777878888886655444443 45555322332 32 24678899999999999999999999999999999998554
Q ss_pred CceEEeeecccccccCCCCCCCCCCCcceeeEeeccc--hhhHHhhcchhh
Q psy5022 109 DLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE--AQFIAQSIGQAF 157 (359)
Q Consensus 109 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~--a~~i~~~ig~af 157 (359)
+-+.| +....+. .+.+++.+-.=|+|+|++ |+.|...|.+|.
T Consensus 80 ~~~~y--nslL~~v-----vq~~~~~~~e~hlFQc~~v~A~~i~~DL~~a~ 123 (127)
T cd01210 80 SMELY--NSILLFV-----VQEPGGSRTEMHIFQCQRVGAEHLVEDLQQAL 123 (127)
T ss_pred CCCCc--CceEEEE-----EeCCCCCCCcEEEEEeccccHHHHHHHHHHHH
Confidence 32211 1222333 233455667799999998 999988777664
No 91
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.37 E-value=0.00033 Score=69.45 Aligned_cols=55 Identities=25% Similarity=0.357 Sum_probs=46.7
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCcc
Q psy5022 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEMD 286 (359)
Q Consensus 231 ~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~~ 286 (359)
.+++|..|.++|||+++| |++||+|++|||+++.+ +++..+.++.+.|.+.|+..
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s~~d~~~~l~~~~~g~~v~l~v~R~g~ 422 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSSVAELRKVLDRAKKGGRVALLILRGGA 422 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 478999999999999999 99999999999999876 44555567789999888643
No 92
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.37 E-value=0.0011 Score=54.90 Aligned_cols=80 Identities=21% Similarity=0.239 Sum_probs=50.1
Q ss_pred cccEEEEeeCC----CCCccceEEEecCCC-CcCCcEEEEEECCCChhhhcCCCCC-CCEEEEECCccHHH------HHH
Q psy5022 202 ELQKEVVVPKA----KGEILGVVIVESGWG-SMLPTVVIANLAPAGAAARCGQLNI-GDQIIAVNGVSLVA------YME 269 (359)
Q Consensus 202 ~~~~~v~l~r~----~~~~lG~~i~~~~~g-~~~~~~~V~~v~~~s~A~~~G~L~~-GD~Il~Vng~~v~~------~~~ 269 (359)
...|+|.+... ..+.||+++.-.... ......-|..|.|+|||++|| |++ .|-|+.+++..+.+ .++
T Consensus 9 ~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~~~l~~~v~ 87 (138)
T PF04495_consen 9 QTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDEDDLFELVE 87 (138)
T ss_dssp SSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--STCHHHHHHH
T ss_pred CeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCHHHHHHHHH
Confidence 45677777542 136899999643222 334577888999999999999 998 69999999977766 344
Q ss_pred hhcCCCeEEEEEEe
Q psy5022 270 FLKANGIEDHSFVK 283 (359)
Q Consensus 270 ~~~~~~~v~l~v~~ 283 (359)
. ..+..+.|.|..
T Consensus 88 ~-~~~~~l~L~Vyn 100 (138)
T PF04495_consen 88 A-NENKPLQLYVYN 100 (138)
T ss_dssp H-TTTS-EEEEEEE
T ss_pred H-cCCCcEEEEEEE
Confidence 3 345678888874
No 93
>PRK10898 serine endoprotease; Provisional
Probab=97.37 E-value=0.00044 Score=66.75 Aligned_cols=54 Identities=20% Similarity=0.449 Sum_probs=45.5
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCc
Q psy5022 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEM 285 (359)
Q Consensus 231 ~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~ 285 (359)
.+++|..|.++|||+++| |++||+|++|||+++.+ .+...+.++.+.+++.|+.
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R~g 338 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISALETMDQVAEIRPGSVIPVVVMRDD 338 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 478999999999999999 99999999999999865 3444456678889888764
No 94
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.36 E-value=0.00061 Score=66.66 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=47.8
Q ss_pred CccceEEEecC-CCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH-----HHHhh--cCCCeEEEEEEeC
Q psy5022 215 EILGVVIVESG-WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-----YMEFL--KANGIEDHSFVKE 284 (359)
Q Consensus 215 ~~lG~~i~~~~-~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~-----~~~~~--~~~~~v~l~v~~~ 284 (359)
.++|+.+.... .+....+++|..|.++|||+++| |++||+|++|||+++.+ +...+ ..+..+.|++.++
T Consensus 85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~ 161 (389)
T PLN00049 85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRG 161 (389)
T ss_pred eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEEC
Confidence 35666664211 11112368899999999999999 99999999999999864 22222 2355777877764
No 95
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.35 E-value=0.00051 Score=67.34 Aligned_cols=65 Identities=17% Similarity=0.293 Sum_probs=51.0
Q ss_pred CccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH-----HHHhhc--CCCeEEEEEEeC
Q psy5022 215 EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-----YMEFLK--ANGIEDHSFVKE 284 (359)
Q Consensus 215 ~~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~-----~~~~~~--~~~~v~l~v~~~ 284 (359)
+++|+.+..... ..+.|..+.+++||+++| |++||.|+.|||.++.+ ++..++ .|..|+|++.|.
T Consensus 100 ~GiG~~i~~~~~----~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 100 GGIGIELQMEDI----GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred cceeEEEEEecC----CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 477887764211 467888899999999999 99999999999999877 344444 456899999884
No 96
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.34 E-value=0.00021 Score=71.20 Aligned_cols=44 Identities=9% Similarity=0.164 Sum_probs=37.9
Q ss_pred CcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy5022 310 QKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLAT 355 (359)
Q Consensus 310 ~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~ 355 (359)
...|..|.++|||++|||++||+|++|||+++.++ +++...+..
T Consensus 127 ~~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~--~~l~~~v~~ 170 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDW--DAVRLALVS 170 (449)
T ss_pred CccccccCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHh
Confidence 45799999999999999999999999999999875 676655543
No 97
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.34 E-value=0.00034 Score=67.51 Aligned_cols=54 Identities=20% Similarity=0.370 Sum_probs=45.6
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCc
Q psy5022 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEM 285 (359)
Q Consensus 231 ~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~ 285 (359)
.+++|..|.++|||+++| |++||+|++|||+++.+ .+...+.++.+.+.+.|+.
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~dl~~~l~~~~~g~~v~l~v~R~g 337 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIGAEELMDRIAETRPGSKVMVTVLRQG 337 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 378999999999999999 99999999999999876 3444456778899988764
No 98
>KOG3552|consensus
Probab=97.33 E-value=0.0003 Score=72.68 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=48.1
Q ss_pred cccCcEEecccccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Q psy5022 295 EIFGDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSV 357 (359)
Q Consensus 295 ~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~ 357 (359)
..|||.+..+ .+.+|..|.+|||+. +.|++||+|++|||+++.+.+++.+++++|++.
T Consensus 65 ~~lGFgfvag----rPviVr~VT~GGps~-GKL~PGDQIl~vN~Epv~daprervIdlvRace 122 (1298)
T KOG3552|consen 65 ASLGFGFVAG----RPVIVRFVTEGGPSI-GKLQPGDQILAVNGEPVKDAPRERVIDLVRACE 122 (1298)
T ss_pred ccccceeecC----CceEEEEecCCCCcc-ccccCCCeEEEecCcccccccHHHHHHHHHHHh
Confidence 3445555432 478899999999974 569999999999999999999999999999864
No 99
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.32 E-value=0.00032 Score=67.63 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=39.9
Q ss_pred CcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy5022 310 QKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLAT 355 (359)
Q Consensus 310 ~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~ 355 (359)
+.+|.+|.++|||+++||++||+|++|||+++.+ ++++.+.+++
T Consensus 279 Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s--~~dl~~~l~~ 322 (351)
T TIGR02038 279 GIVITGVDPNGPAARAGILVRDVILKYDGKDVIG--AEELMDRIAE 322 (351)
T ss_pred cceEeecCCCChHHHCCCCCCCEEEEECCEEcCC--HHHHHHHHHh
Confidence 6789999999999999999999999999999976 4788887775
No 100
>PRK10898 serine endoprotease; Provisional
Probab=97.30 E-value=0.00039 Score=67.06 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=39.3
Q ss_pred cCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy5022 309 LQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLAT 355 (359)
Q Consensus 309 ~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~ 355 (359)
.+.+|.+|.++|||+++||++||+|++|||+++.++ .++.+.+.+
T Consensus 279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~~l~~~l~~ 323 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISA--LETMDQVAE 323 (353)
T ss_pred CeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHh
Confidence 367899999999999999999999999999999764 677776654
No 101
>KOG3552|consensus
Probab=97.29 E-value=0.00027 Score=73.10 Aligned_cols=69 Identities=23% Similarity=0.401 Sum_probs=54.1
Q ss_pred cEEEEeeCCCCCccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH--------HHHhhcCCC
Q psy5022 204 QKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA--------YMEFLKANG 275 (359)
Q Consensus 204 ~~~v~l~r~~~~~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~--------~~~~~~~~~ 275 (359)
.|.|.+.|+. .|||.++.+ ..++|..|.+|||+. |+|++||+|++|||.++.+ +++.+.+.
T Consensus 56 pr~vq~~r~~--~lGFgfvag------rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~s- 124 (1298)
T KOG3552|consen 56 PRQVQLQRNA--SLGFGFVAG------RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESS- 124 (1298)
T ss_pred chhhhhhccc--cccceeecC------CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhh-
Confidence 6668888875 577766643 367888999999997 7899999999999999987 55666554
Q ss_pred eEEEEEEeC
Q psy5022 276 IEDHSFVKE 284 (359)
Q Consensus 276 ~v~l~v~~~ 284 (359)
|.|+|...
T Consensus 125 -v~ltV~qP 132 (1298)
T KOG3552|consen 125 -VNLTVCQP 132 (1298)
T ss_pred -cceEEecc
Confidence 88888753
No 102
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.22 E-value=0.00054 Score=66.81 Aligned_cols=117 Identities=16% Similarity=0.155 Sum_probs=70.2
Q ss_pred EEEECCCChhhhcCCCCCCCEEEEECCccHHH--HHHhhcCCCeEEEEEE-eCcce-EE--eeccccccCcEEeccc---
Q psy5022 235 IANLAPAGAAARCGQLNIGDQIIAVNGVSLVA--YMEFLKANGIEDHSFV-KEMDY-QE--VLNSQEIFGDELQMFA--- 305 (359)
Q Consensus 235 V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~--~~~~~~~~~~v~l~v~-~~~~~-~~--~~~~~~~~G~~~~~~~--- 305 (359)
|..|.|+|||+++| |++||+|++|||+++.+ -+...-.+..+.+++. ++.+. .. .......+|+......
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw~D~~~~l~~e~l~L~V~~rdGe~~~l~Ie~~~dedlG~~f~~~~~d~ 80 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRDLIDYQFLCADEELELEVLDANGESHQIEIEKDLDEDLGLEFTTALFDG 80 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHhcCCcEEEEEEcCCCeEEEEEEecCCCCCCcEEeccccCCc
Confidence 56789999999999 99999999999999887 1221113356888876 43322 22 1234567887765321
Q ss_pred -c--cccCc--EEEEEcCCChhhcCC--CCCCCEEE---EECCEECCCCCHHHHHHHHHh
Q psy5022 306 -K--KELQK--EICSLLRGGIAERGG--VRVGHRII---EINNQSVVAVPHEKIVNLLAT 355 (359)
Q Consensus 306 -~--~~~~~--~I~~v~~gs~A~~~g--L~~GD~Il---~INg~~v~~~~~~~~v~~l~~ 355 (359)
+ .+... ||...-+ .-|.. +|--|-=+ .=|=..++|++.+++-++++.
T Consensus 81 ~~~C~N~C~FCFidQlP~---gmR~sLY~KDDDyRLSFL~GnyiTLTNl~~~d~~RI~~~ 137 (433)
T TIGR03279 81 LIQCNNRCPFCFIDQQPP---GKRESLYLKDDDYRLSFLYGSYLTLTNLPPAEWQRIEQL 137 (433)
T ss_pred ccccCCcCceEeccCCCC---CCcCcceeccCcchhhhhccceeeecCCCHHHHHHHHHc
Confidence 0 11111 3443332 23322 34444222 235567788888888888774
No 103
>PRK10942 serine endoprotease; Provisional
Probab=97.21 E-value=0.00061 Score=68.26 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=40.4
Q ss_pred cCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 309 LQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 309 ~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
.+.+|.+|.++|||+++||++||+|++|||+++.++ +++...+...
T Consensus 311 ~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~--~dl~~~l~~~ 356 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGTM 356 (473)
T ss_pred CceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhc
Confidence 367899999999999999999999999999999864 7787777653
No 104
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.21 E-value=0.00058 Score=67.48 Aligned_cols=53 Identities=23% Similarity=0.359 Sum_probs=43.4
Q ss_pred cEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCcc
Q psy5022 232 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEMD 286 (359)
Q Consensus 232 ~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~~ 286 (359)
+++|..|.++|||+++| |++||+|++|||+++.+ .++. ..++.+.+++.|+..
T Consensus 204 g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s~~dl~~~l~~-~~~~~v~l~v~R~g~ 262 (420)
T TIGR00054 204 EPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRSWTDFVSAVKE-NPGKSMDIKVERNGE 262 (420)
T ss_pred CcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHh-CCCCceEEEEEECCE
Confidence 57899999999999999 99999999999999876 2332 235568888888654
No 105
>KOG1421|consensus
Probab=97.19 E-value=0.0019 Score=65.23 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=80.1
Q ss_pred cEEEEEECCCChhhhcCCCCCCCEEEEECCccHHHH---HHhh--cCCCeEEEEEEeCcceEEe-e--cc-----cccc-
Q psy5022 232 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAY---MEFL--KANGIEDHSFVKEMDYQEV-L--NS-----QEIF- 297 (359)
Q Consensus 232 ~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~~---~~~~--~~~~~v~l~v~~~~~~~~~-~--~~-----~~~~- 297 (359)
-++|..|.++|||++. |++||.+++||+.-+.+. -+.+ ..++.+.|+|.|+.+.-.+ . .+ ...|
T Consensus 304 mLvV~~vL~~gpa~k~--Le~GDillavN~t~l~df~~l~~iLDegvgk~l~LtI~Rggqelel~vtvqdlh~itp~R~l 381 (955)
T KOG1421|consen 304 MLVVETVLPEGPAEKK--LEPGDILLAVNSTCLNDFEALEQILDEGVGKNLELTIQRGGQELELTVTVQDLHGITPDRFL 381 (955)
T ss_pred eEEEEEeccCCchhhc--cCCCcEEEEEcceehHHHHHHHHHHhhccCceEEEEEEeCCEEEEEEEEeccccCCCCceEE
Confidence 3578899999999984 999999999999888772 1222 3567889999987653221 0 00 0000
Q ss_pred ---CcEEeccc--------ccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy5022 298 ---GDELQMFA--------KKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLAT 355 (359)
Q Consensus 298 ---G~~~~~~~--------~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~ 355 (359)
|-.+.... -+..+.||.+-. |+++.++++. |-.|.+||++++.++ +.+++.++.
T Consensus 382 evcGav~hdlsyq~ar~y~lP~~GvyVa~~~-gsf~~~~~~y-~~ii~~vanK~tPdL--daFidvlk~ 446 (955)
T KOG1421|consen 382 EVCGAVFHDLSYQLARLYALPVEGVYVASPG-GSFRHRGPRY-GQIIDSVANKPTPDL--DAFIDVLKE 446 (955)
T ss_pred EEcceEecCCCHHHHhhcccccCcEEEccCC-CCccccCCcc-eEEEEeecCCcCCCH--HHHHHHHHh
Confidence 11111000 011256888766 8899998888 999999999999875 888888875
No 106
>KOG3605|consensus
Probab=97.15 E-value=0.0003 Score=70.21 Aligned_cols=67 Identities=24% Similarity=0.390 Sum_probs=52.2
Q ss_pred cccccCcEEeccc--ccccCcEEEEEcCCChhhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhccCC
Q psy5022 293 SQEIFGDELQMFA--KKELQKEICSLLRGGIAERGG-VRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359 (359)
Q Consensus 293 ~~~~~G~~~~~~~--~~~~~~~I~~v~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~v~~l~~s~g~ 359 (359)
..+.||..+.... .--...+|..++.+|||+++| |..||+|++|||.++.+++......+||+.+++
T Consensus 655 kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQ 724 (829)
T KOG3605|consen 655 KGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQ 724 (829)
T ss_pred cCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhccccc
Confidence 4456777665211 011124788999999999965 999999999999999999999999999987753
No 107
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.10 E-value=0.001 Score=55.19 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=44.1
Q ss_pred cccccCcEEeccccc---ccCcEEEEEcCCChhhcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHhccC
Q psy5022 293 SQEIFGDELQMFAKK---ELQKEICSLLRGGIAERGGVRV-GHRIIEINNQSVVAVPHEKIVNLLATSVG 358 (359)
Q Consensus 293 ~~~~~G~~~~~~~~~---~~~~~I~~v~~gs~A~~~gL~~-GD~Il~INg~~v~~~~~~~~v~~l~~s~g 358 (359)
..+.+|++++-.... ....-|.+|.++|||++|||++ .|-|+.+|+..+.+. +++.++++++.+
T Consensus 24 ~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~--~~l~~~v~~~~~ 91 (138)
T PF04495_consen 24 GQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDE--DDLFELVEANEN 91 (138)
T ss_dssp SSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--ST--CHHHHHHHHTTT
T ss_pred CCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCH--HHHHHHHHHcCC
Confidence 346788888643222 2234689999999999999999 699999999998864 788888887765
No 108
>KOG0609|consensus
Probab=97.07 E-value=0.00088 Score=65.97 Aligned_cols=64 Identities=30% Similarity=0.556 Sum_probs=54.5
Q ss_pred cccccCcEEecccccccCcEEEEEcCCChhhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhccC
Q psy5022 293 SQEIFGDELQMFAKKELQKEICSLLRGGIAERGG-VRVGHRIIEINNQSVVAVPHEKIVNLLATSVG 358 (359)
Q Consensus 293 ~~~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~v~~l~~s~g 358 (359)
.+..+|.+++.. .....+|.+|..||.|++.| |+.||.|++|||+++.+....++..+|+++.|
T Consensus 132 ~~eplG~Tik~~--e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G 196 (542)
T KOG0609|consen 132 TGEPLGATIRVE--EDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRG 196 (542)
T ss_pred CCCccceEEEec--cCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCC
Confidence 356678888742 22257999999999999955 99999999999999999999999999999876
No 109
>KOG3542|consensus
Probab=97.04 E-value=0.0012 Score=66.33 Aligned_cols=78 Identities=27% Similarity=0.344 Sum_probs=61.8
Q ss_pred cccEEEEeeC-CCCCccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH-----HHHhhcCCC
Q psy5022 202 ELQKEVVVPK-AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-----YMEFLKANG 275 (359)
Q Consensus 202 ~~~~~v~l~r-~~~~~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~-----~~~~~~~~~ 275 (359)
...|.|.|.| .....|-|.+.+|. ...-+++|..|.||+-|++.| |+.||.|++|||+...+ ....++++.
T Consensus 534 AK~RqviLtk~sre~pl~f~L~GGs--EkGfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnnt 610 (1283)
T KOG3542|consen 534 AKPRQVILTKASREDPLMFRLVGGS--EKGFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNNT 610 (1283)
T ss_pred ccceeEEEecccccCCceeEeccCc--cccceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCCc
Confidence 3457788888 33467888887542 122478999999999999999 99999999999999887 667788887
Q ss_pred eEEEEEE
Q psy5022 276 IEDHSFV 282 (359)
Q Consensus 276 ~v~l~v~ 282 (359)
.++|++.
T Consensus 611 hLtltvK 617 (1283)
T KOG3542|consen 611 HLTLTVK 617 (1283)
T ss_pred eEEEEEe
Confidence 7777775
No 110
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.00 E-value=0.0016 Score=67.55 Aligned_cols=62 Identities=24% Similarity=0.415 Sum_probs=43.3
Q ss_pred ccceEEEecCCCCcCCcEEEEEECCCChhhhc-CCCCCCCEEEEEC--CccH---HH-----HHHhhc--CCCeEEEEEE
Q psy5022 216 ILGVVIVESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVN--GVSL---VA-----YMEFLK--ANGIEDHSFV 282 (359)
Q Consensus 216 ~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~-G~L~~GD~Il~Vn--g~~v---~~-----~~~~~~--~~~~v~l~v~ 282 (359)
++|+.+... ...++|..|.|||||+++ | |++||+|++|| |.++ .+ +...++ .|..|+|+|.
T Consensus 245 GIGa~l~~~-----~~~~~V~~vipGsPA~ka~g-Lk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~ 318 (667)
T PRK11186 245 GIGAVLQMD-----DDYTVINSLVAGGPAAKSKK-LSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEIL 318 (667)
T ss_pred EEEEEEEEe-----CCeEEEEEccCCChHHHhCC-CCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEE
Confidence 556555421 235788899999999998 7 99999999999 4332 22 333333 4667888887
Q ss_pred e
Q psy5022 283 K 283 (359)
Q Consensus 283 ~ 283 (359)
+
T Consensus 319 r 319 (667)
T PRK11186 319 P 319 (667)
T ss_pred e
Confidence 5
No 111
>KOG4407|consensus
Probab=96.92 E-value=0.0011 Score=70.70 Aligned_cols=122 Identities=16% Similarity=0.235 Sum_probs=87.8
Q ss_pred EEEeeCCCCCccceEEEec-------------CCCCcC--------C--cEEEEEECCCChhhhcCCCCCCCEEEEECCc
Q psy5022 206 EVVVPKAKGEILGVVIVES-------------GWGSML--------P--TVVIANLAPAGAAARCGQLNIGDQIIAVNGV 262 (359)
Q Consensus 206 ~v~l~r~~~~~lG~~i~~~-------------~~g~~~--------~--~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~ 262 (359)
.+.+.|+.+.+|||++.-. ..|... + ..++..+..++++..+| +..||.|..|||.
T Consensus 48 ~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v~~itG~ 126 (1973)
T KOG4407|consen 48 LIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGVAGITGL 126 (1973)
T ss_pred eEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cccccceeeeccc
Confidence 4556666788999998420 111111 1 23556667788999999 9999999999996
Q ss_pred cHHHHHHhhcCCCeEEEEEEeCcceEEeeccccccCcEEecccccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECC
Q psy5022 263 SLVAYMEFLKANGIEDHSFVKEMDYQEVLNSQEIFGDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVV 342 (359)
Q Consensus 263 ~v~~~~~~~~~~~~v~l~v~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~ 342 (359)
.+.+ ...+. .|++ . .....+|.+|.+++||.-+-|+-||+++.||.+++.
T Consensus 127 e~~~---------~TS~~-----~~~v------------k----~~eT~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A 176 (1973)
T KOG4407|consen 127 EPTS---------PTSLP-----PYQV------------K----AMETIFIKEVQANGPAHYANLQTGDRVLMVNNQPIA 176 (1973)
T ss_pred ccCC---------Ccccc-----HHHH------------h----hhhhhhhhhhccCChhHHHhhhccceeEEeecCccc
Confidence 6532 00110 0110 0 011468999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccC
Q psy5022 343 AVPHEKIVNLLATSVG 358 (359)
Q Consensus 343 ~~~~~~~v~~l~~s~g 358 (359)
++...+++.++++.+-
T Consensus 177 ~i~~s~~~S~~~qt~~ 192 (1973)
T KOG4407|consen 177 GIAYSTIVSMIKQTPA 192 (1973)
T ss_pred chhhhhhhhhhccCCC
Confidence 9999999999998653
No 112
>KOG4458|consensus
Probab=96.92 E-value=0.00064 Score=47.29 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=29.5
Q ss_pred CCCCCCcccCcCCCCcEEEEeeeEEEEeccCCChhh
Q psy5022 14 ALPEDPVVDTGLGPGTLFRLKFLGSVQVDEDDPKCC 49 (359)
Q Consensus 14 ~~~~~~~~~~~l~~gv~f~~kylGs~~V~~~~~~~~ 49 (359)
++.-|.++++++..|+.|.+||+||+++..++..-.
T Consensus 19 d~riplhne~a~qhgi~feakyvgsldiprp~srie 54 (78)
T KOG4458|consen 19 DCRIPLHNEDAFQHGICFEAKYVGSLDIPRPGSRIE 54 (78)
T ss_pred cceeeccchhhhhccceEeeeeeeeecCCCCCCeee
Confidence 344567788899999999999999999988775544
No 113
>KOG4448|consensus
Probab=96.92 E-value=0.0051 Score=56.81 Aligned_cols=127 Identities=14% Similarity=0.181 Sum_probs=87.1
Q ss_pred cEEEEeeeEEEEeccCCChhhHHHH-HHHH-HHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccceeeccccceeeeEEe
Q psy5022 29 TLFRLKFLGSVQVDEDDPKCCKRRV-KKVM-VEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIAD 106 (359)
Q Consensus 29 v~f~~kylGs~~V~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~~~ 106 (359)
-.|.+-|+|..---+.+++..+... -..- ++... +.+.....|.|+..|+++.-.. +-+.-+-.++|-||..
T Consensus 61 p~y~V~ylgnalti~argegc~ek~ls~iw~~~t~~----~r~~~~M~Lkv~asglk~~h~q--e~l~ly~ahrityc~a 134 (374)
T KOG4448|consen 61 PPYVVFYLGNALTICARGEGCKEKTLSGIWHFYTML----KRKDNVMTLKVEASGLKAFHEQ--EGLTLYWAHRITYCRA 134 (374)
T ss_pred CCeEEEEecceeEEEecCCCcchhhhhhHHHHHHhh----cccCceeEEEEecccceeeecc--Ccceeeeeeeeeeeec
Confidence 3599999999888777777775432 1111 22221 1224467899999999998774 5677788999999998
Q ss_pred cCCceEEeeecccccccCCCCCCCCCCCcceeeEeec-cc--hhhHHhhcchhhHHHHHHHHHhc
Q psy5022 107 IGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFES-DE--AQFIAQSIGQAFQVAYMEFLKAN 168 (359)
Q Consensus 107 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s-~~--a~~i~~~ig~af~~ay~~~L~~~ 168 (359)
+.+ -+++|..|-+.++-+ ...-+.||.-.| .+ |+.|+..+.+-...|.++|-+..
T Consensus 135 ~~~-----~pkvf~wiyrhegk~--~~~~lrchaVL~sk~k~aqai~d~l~~n~~~aLreFKr~k 192 (374)
T KOG4448|consen 135 PSG-----YPKVFCWIYRHEGKQ--LKSELRCHAVLCSKKKHAQAIEDVLPANLLLALREFKREK 192 (374)
T ss_pred CCC-----CCeEEEEEEecchhh--hhhccceeeeeecchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 877 466777765433211 123467995554 33 99999999888888888887533
No 114
>KOG3834|consensus
Probab=96.91 E-value=0.0041 Score=59.69 Aligned_cols=124 Identities=17% Similarity=0.203 Sum_probs=80.7
Q ss_pred cEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH---HHHh-hc-CCCeEEEEEEeCcceEE-----eecccc---ccC
Q psy5022 232 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA---YMEF-LK-ANGIEDHSFVKEMDYQE-----VLNSQE---IFG 298 (359)
Q Consensus 232 ~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~---~~~~-~~-~~~~v~l~v~~~~~~~~-----~~~~~~---~~G 298 (359)
+.-|-.|..+|+|+++|..---|-|++|||..+.. .++. ++ +...|++++........ ...... -||
T Consensus 16 g~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~dnd~Lk~llk~~sekVkltv~n~kt~~~R~v~I~ps~~wggqllG 95 (462)
T KOG3834|consen 16 GYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKDNDTLKALLKANSEKVKLTVYNSKTQEVRIVEIVPSNNWGGQLLG 95 (462)
T ss_pred eEEEEEeecCChHHhcCcchhhhhhheeCcccccCchHHHHHHHHhcccceEEEEEecccceeEEEEecccccccccccc
Confidence 44566799999999999444558999999999874 3322 22 22348888875432211 112222 377
Q ss_pred cEEeccccc---ccCcEEEEEcCCChhhcCCCC-CCCEEEEE-CCEECCCCCHHHHHHHHHhccC
Q psy5022 299 DELQMFAKK---ELQKEICSLLRGGIAERGGVR-VGHRIIEI-NNQSVVAVPHEKIVNLLATSVG 358 (359)
Q Consensus 299 ~~~~~~~~~---~~~~~I~~v~~gs~A~~~gL~-~GD~Il~I-Ng~~v~~~~~~~~v~~l~~s~g 358 (359)
.+++--... ..---|.+|.++|||+.+||+ -+|-|+-+ |...- ..+++..+|..+.+
T Consensus 96 vsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~---~~eDl~~lIeshe~ 157 (462)
T KOG3834|consen 96 VSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMH---EEEDLFTLIESHEG 157 (462)
T ss_pred eEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhcc---chHHHHHHHHhccC
Confidence 777621100 001147899999999999998 88999988 65443 24788888877655
No 115
>KOG1320|consensus
Probab=96.86 E-value=0.002 Score=63.50 Aligned_cols=122 Identities=15% Similarity=0.157 Sum_probs=72.3
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH-H-----------HHhhcCCCeEEEEEEeCcceEEeec------
Q psy5022 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-Y-----------MEFLKANGIEDHSFVKEMDYQEVLN------ 292 (359)
Q Consensus 231 ~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~-~-----------~~~~~~~~~v~l~v~~~~~~~~~~~------ 292 (359)
.+..+..+.+-+.|.+. ++.||.|++++|..+.- . +......+.+...+.+..+++...+
T Consensus 287 ~g~~i~~~~qtd~ai~~--~nsg~~ll~~DG~~IgVn~~~~~ri~~~~~iSf~~p~d~vl~~v~r~~e~~~~lr~~~~~~ 364 (473)
T KOG1320|consen 287 TGVLISKINQTDAAINP--GNSGGPLLNLDGEVIGVNTRKVTRIGFSHGISFKIPIDTVLVIVLRLGEFQISLRPVKPLV 364 (473)
T ss_pred cceeeeeecccchhhhc--ccCCCcEEEecCcEeeeeeeeeEEeeccccceeccCchHhhhhhhhhhhhceeeccccCcc
Confidence 34688888888888774 69999999999988732 0 0000011111111112111111100
Q ss_pred ------------cccccCcEEecccc-----cccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy5022 293 ------------SQEIFGDELQMFAK-----KELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLAT 355 (359)
Q Consensus 293 ------------~~~~~G~~~~~~~~-----~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~ 355 (359)
-..+|=|.+..-.. .....+|..|.+|+++..+++++||+|.+|||+++.++ .++..+|+.
T Consensus 365 p~~~~~g~~s~~i~~g~vf~~~~~~~~~~~~~~q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~--~~l~~~i~~ 442 (473)
T KOG1320|consen 365 PVHQYIGLPSYYIFAGLVFVPLTKSYIFPSGVVQLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNL--KHLYELIEE 442 (473)
T ss_pred cccccCCceeEEEecceEEeecCCCccccccceeEEEEEEeccCCCcccccccCCCEEEEECCEEeech--HHHHHHHHh
Confidence 00111122211100 01135788999999999999999999999999999987 566666665
Q ss_pred c
Q psy5022 356 S 356 (359)
Q Consensus 356 s 356 (359)
+
T Consensus 443 ~ 443 (473)
T KOG1320|consen 443 C 443 (473)
T ss_pred c
Confidence 3
No 116
>KOG1421|consensus
Probab=96.66 E-value=0.0059 Score=61.73 Aligned_cols=117 Identities=20% Similarity=0.162 Sum_probs=74.3
Q ss_pred EEEEEECCCChhhhcCCCCCCCEEEEECCccHHH----------HHHhhcCCCeEEEEEEeCcceEEeeccccccCcEEe
Q psy5022 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA----------YMEFLKANGIEDHSFVKEMDYQEVLNSQEIFGDELQ 302 (359)
Q Consensus 233 ~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~----------~~~~~~~~~~v~l~v~~~~~~~~~~~~~~~~G~~~~ 302 (359)
.+|+++.+.-+- - |..||.|+++||+.+.. -...++.|..+.+++.--+.|+. .+----+|-.+.
T Consensus 773 ~~ishv~~~~~k---i-l~~gdiilsvngk~itr~~dl~d~~eid~~ilrdg~~~~ikipt~p~~et-~r~vi~~gailq 847 (955)
T KOG1421|consen 773 YVISHVRPLLHK---I-LGVGDIILSVNGKMITRLSDLHDFEEIDAVILRDGIEMEIKIPTYPEYET-SRAVIWMGAILQ 847 (955)
T ss_pred EEEEeeccCccc---c-cccccEEEEecCeEEeeehhhhhhhhhheeeeecCcEEEEEecccccccc-ceEEEEEecccc
Confidence 567888776543 2 88999999999988754 12334555555555432222211 000000121111
Q ss_pred cc--------cccccCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Q psy5022 303 MF--------AKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSV 357 (359)
Q Consensus 303 ~~--------~~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~ 357 (359)
.. .+-..+.|+.....||||-+ +|++-.-|.+|||+.+.+ .++++.+|+.-+
T Consensus 848 ~ph~av~~q~edlp~gvyvt~rg~gspalq-~l~aa~fitavng~~t~~--lddf~~~~~~ip 907 (955)
T KOG1421|consen 848 PPHSAVFEQVEDLPEGVYVTSRGYGSPALQ-MLRAAHFITAVNGHDTNT--LDDFYHMLLEIP 907 (955)
T ss_pred CchHHHHHHHhccCCceEEeecccCChhHh-hcchheeEEEecccccCc--HHHHHHHHhhCC
Confidence 10 01113679999999999999 999999999999999976 599999988643
No 117
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.60 E-value=0.0025 Score=61.79 Aligned_cols=38 Identities=26% Similarity=0.580 Sum_probs=33.5
Q ss_pred CChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccC
Q psy5022 319 GGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVG 358 (359)
Q Consensus 319 gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~g 358 (359)
+|||+++||++||+|++|||.++.+ ++++.++++...|
T Consensus 123 ~SPAa~AGLq~GDiIvsING~~V~s--~~DL~~iL~~~~g 160 (402)
T TIGR02860 123 HSPGEEAGIQIGDRILKINGEKIKN--MDDLANLINKAGG 160 (402)
T ss_pred CCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhCCC
Confidence 5899999999999999999999976 4888888887654
No 118
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.57 E-value=0.01 Score=58.67 Aligned_cols=55 Identities=29% Similarity=0.422 Sum_probs=41.6
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHHHHHhhcCCCeEEEEEEeCcceE
Q psy5022 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLKANGIEDHSFVKEMDYQ 288 (359)
Q Consensus 231 ~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~~v~l~v~~~~~~~ 288 (359)
....|..|.++|||+++| |.+||+|++|||.+ ..+...+.+..+.+.+.+.....
T Consensus 462 g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s--~~l~~~~~~d~i~v~~~~~~~L~ 516 (558)
T COG3975 462 GHEKITFVFPGGPAYKAG-LSPGDKIVAINGIS--DQLDRYKVNDKIQVHVFREGRLR 516 (558)
T ss_pred CeeEEEecCCCChhHhcc-CCCccEEEEEcCcc--ccccccccccceEEEEccCCceE
Confidence 356899999999999999 99999999999982 23344445556777777654443
No 119
>KOG4371|consensus
Probab=96.53 E-value=0.0072 Score=63.65 Aligned_cols=140 Identities=20% Similarity=0.284 Sum_probs=93.7
Q ss_pred EEeeCCCCCccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH-----HHHhhc-CCCeEEEE
Q psy5022 207 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-----YMEFLK-ANGIEDHS 280 (359)
Q Consensus 207 v~l~r~~~~~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~-----~~~~~~-~~~~v~l~ 280 (359)
+.+.|++ ..||..++... ....+....-.+.-.+-. |+.||.++-+||..+.+ ++..++ .++.+.|.
T Consensus 1151 ~~~~r~~-~~l~~~~a~~~-----~~~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~ 1223 (1332)
T KOG4371|consen 1151 VELDRNE-GSLGVQIASLS-----GRVCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLG 1223 (1332)
T ss_pred ccCCCCC-CCCCceeccCc-----cceehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccCceEEEE
Confidence 5566666 48998887432 123333333333333334 99999999999987776 333344 34568888
Q ss_pred EEeCcc-eE------------------EeeccccccCcEEecccccccCcEEEEEcCCChhhc-CCCCCCCEEEEECCEE
Q psy5022 281 FVKEMD-YQ------------------EVLNSQEIFGDELQMFAKKELQKEICSLLRGGIAER-GGVRVGHRIIEINNQS 340 (359)
Q Consensus 281 v~~~~~-~~------------------~~~~~~~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~-~gL~~GD~Il~INg~~ 340 (359)
+.|... |. ++.++..++|+.+.... ...+.+|..+..++.|.. +.+|+||++...+|++
T Consensus 1224 ~~r~~~~~~d~~~~s~~~~~~~l~~~~~~~~p~~~~~~~~~~~~-~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~ 1302 (1332)
T KOG4371|consen 1224 VQRPPPAYSDQHHASSTSASAPLISVMLLKKPMATLGLSLAKRT-MSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEP 1302 (1332)
T ss_pred eecCCcccccchhhhhhcccchhhhheeeecccccccccccccC-cCCceeeecccccccccccccccccceeeccCCcc
Confidence 887532 11 13356677888776422 223568888888877776 6699999999999999
Q ss_pred CCCCCHHHHHHHHH
Q psy5022 341 VVAVPHEKIVNLLA 354 (359)
Q Consensus 341 v~~~~~~~~v~~l~ 354 (359)
+.+.+...+++.++
T Consensus 1303 ~~~~~p~~~l~~~~ 1316 (1332)
T KOG4371|consen 1303 VDGFTPATILEKLK 1316 (1332)
T ss_pred CCCCChHHHHHHhh
Confidence 99988877776655
No 120
>KOG0606|consensus
Probab=96.35 E-value=0.0057 Score=65.14 Aligned_cols=65 Identities=23% Similarity=0.337 Sum_probs=52.6
Q ss_pred ccccccCcEEecccc--cccC-----cEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 292 NSQEIFGDELQMFAK--KELQ-----KEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 292 ~~~~~~G~~~~~~~~--~~~~-----~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
.....|||++....- +... ..+..|.+||||..+||++||.|+.|||+++.++.|.+++++|-++
T Consensus 634 ~~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~ 705 (1205)
T KOG0606|consen 634 FSGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKS 705 (1205)
T ss_pred ccccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhc
Confidence 456789988764321 1111 3688999999999999999999999999999999999999998744
No 121
>KOG3938|consensus
Probab=96.35 E-value=0.0023 Score=57.52 Aligned_cols=65 Identities=23% Similarity=0.319 Sum_probs=54.9
Q ss_pred eeccccccCcEEecccccccCcEEEEEcCCChhhc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 290 VLNSQEIFGDELQMFAKKELQKEICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 290 ~~~~~~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~-~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
+.+....||+++... +-...+|..|.+||.-.+ --+++||.|-+|||+++.++-|.++.++||.-
T Consensus 132 v~KsedalGlTITDN--G~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel 197 (334)
T KOG3938|consen 132 VVKSEDALGLTITDN--GAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKEL 197 (334)
T ss_pred EEecccccceEEeeC--CcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhc
Confidence 456778899999742 222459999999999998 45999999999999999999999999999973
No 122
>KOG3129|consensus
Probab=96.15 E-value=0.012 Score=51.30 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=40.0
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH--------HHHhhcCCCeEEEEEEeCcc
Q psy5022 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA--------YMEFLKANGIEDHSFVKEMD 286 (359)
Q Consensus 231 ~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~--------~~~~~~~~~~v~l~v~~~~~ 286 (359)
+-++|..|.|+|||+.+| |+.||.|+.+....-.+ .+.....+..+.+++.|...
T Consensus 139 ~Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~ 201 (231)
T KOG3129|consen 139 PFAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQ 201 (231)
T ss_pred ceEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCC
Confidence 356889999999999999 99999999986644322 23333445567777776543
No 123
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.13 E-value=0.015 Score=56.56 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=35.0
Q ss_pred CChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCcc
Q psy5022 241 AGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEMD 286 (359)
Q Consensus 241 ~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~~ 286 (359)
+|||+++| |++||.|++|||.++.+ .++... +..+.+.+.|+..
T Consensus 123 ~SPAa~AG-Lq~GDiIvsING~~V~s~~DL~~iL~~~~-g~~V~LtV~R~Ge 172 (402)
T TIGR02860 123 HSPGEEAG-IQIGDRILKINGEKIKNMDDLANLINKAG-GEKLTLTIERGGK 172 (402)
T ss_pred CCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhCC-CCeEEEEEEECCE
Confidence 68999999 99999999999998876 344433 5678888887653
No 124
>KOG3129|consensus
Probab=96.08 E-value=0.01 Score=51.80 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=33.0
Q ss_pred EEEEEcCCChhhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHhc
Q psy5022 312 EICSLLRGGIAERGGVRVGHRIIEINNQSVVAVP-HEKIVNLLATS 356 (359)
Q Consensus 312 ~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~-~~~~v~~l~~s 356 (359)
+|.+|.++|||++|||+.||.|+.+....-.+.. ...+....+++
T Consensus 142 ~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~ 187 (231)
T KOG3129|consen 142 VVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSN 187 (231)
T ss_pred EEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhc
Confidence 7899999999999999999999998765544432 34444444443
No 125
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=95.92 E-value=0.015 Score=53.61 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=39.2
Q ss_pred ChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCcce
Q psy5022 242 GAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEMDY 287 (359)
Q Consensus 242 s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~~~ 287 (359)
....++| |++||.+++|||.++.+ +++.+++...++|+|.|+.+.
T Consensus 218 ~lF~~~G-Lq~GDva~sING~dL~D~~qa~~l~~~L~~~tei~ltVeRdGq~ 268 (276)
T PRK09681 218 SLFDASG-FKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGAR 268 (276)
T ss_pred HHHHHcC-CCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEECCEE
Confidence 4578889 99999999999999976 778899999999999998653
No 126
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=95.81 E-value=0.019 Score=43.76 Aligned_cols=47 Identities=32% Similarity=0.403 Sum_probs=30.4
Q ss_pred CcEEEEEcCC--------ChhhcCC--CCCCCEEEEECCEECCCCCHHHHHHHHHhccC
Q psy5022 310 QKEICSLLRG--------GIAERGG--VRVGHRIIEINNQSVVAVPHEKIVNLLATSVG 358 (359)
Q Consensus 310 ~~~I~~v~~g--------s~A~~~g--L~~GD~Il~INg~~v~~~~~~~~v~~l~~s~g 358 (359)
...|.+|.+| ||-.+.| +++||.|++|||+++... .+.-.+|.+..|
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~ag 69 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAG 69 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTT
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCC
Confidence 3467788776 6666755 779999999999999764 567777777665
No 127
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.02 Score=55.14 Aligned_cols=54 Identities=22% Similarity=0.342 Sum_probs=45.2
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCc
Q psy5022 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEM 285 (359)
Q Consensus 231 ~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~ 285 (359)
.+++|..+.+++||+++| ++.||.|+++||.++.+ .+...+.+..+.+.+.|+.
T Consensus 270 ~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g 329 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGG 329 (347)
T ss_pred CceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECC
Confidence 357899999999999999 99999999999999877 3344446678888888863
No 128
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=95.69 E-value=0.056 Score=41.14 Aligned_cols=53 Identities=28% Similarity=0.323 Sum_probs=33.4
Q ss_pred cEEEEEECCC--------ChhhhcC-CCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCc
Q psy5022 232 TVVIANLAPA--------GAAARCG-QLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEM 285 (359)
Q Consensus 232 ~~~V~~v~~~--------s~A~~~G-~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~ 285 (359)
+..|.+|.++ ||..+.| .+++||.|++|||+++.. ++.. ..++.|.|++.+..
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~~~~lL~~-~agk~V~Ltv~~~~ 80 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADANPYRLLEG-KAGKQVLLTVNRKP 80 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB-HHHHHHT-TTTSEEEEEEE-ST
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCCCHHHHhcc-cCCCEEEEEEecCC
Confidence 5667777665 7777777 135999999999999876 3333 34568999988654
No 129
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=95.23 E-value=0.02 Score=56.61 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=27.8
Q ss_pred cEEEEEcCCChhhcCCCCCCCEEEEECCE
Q psy5022 311 KEICSLLRGGIAERGGVRVGHRIIEINNQ 339 (359)
Q Consensus 311 ~~I~~v~~gs~A~~~gL~~GD~Il~INg~ 339 (359)
..|..|.++|||.+|||.+||+|++|||.
T Consensus 464 ~~i~~V~~~gPA~~AGl~~Gd~ivai~G~ 492 (558)
T COG3975 464 EKITFVFPGGPAYKAGLSPGDKIVAINGI 492 (558)
T ss_pred eEEEecCCCChhHhccCCCccEEEEEcCc
Confidence 47999999999999999999999999999
No 130
>PF12812 PDZ_1: PDZ-like domain
Probab=95.20 E-value=0.042 Score=40.86 Aligned_cols=46 Identities=15% Similarity=0.303 Sum_probs=39.5
Q ss_pred CcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Q psy5022 310 QKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSV 357 (359)
Q Consensus 310 ~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~ 357 (359)
+.++.+...|+++...|+..|-.|.+|||+++.++ +++++.+|.-+
T Consensus 31 ~gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~L--d~f~~vvk~ip 76 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDL--DDFIKVVKKIP 76 (78)
T ss_pred CEEEEEecCCChhhhCCCCCCeEEEeECCcCCcCH--HHHHHHHHhCC
Confidence 35666778889999888999999999999999875 99999988754
No 131
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.036 Score=53.33 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=39.3
Q ss_pred cCcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 309 LQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 309 ~~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
.+.+|..+.++|||+++|++.||.|+++||.++.+ ..++.+.+...
T Consensus 270 ~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~--~~~l~~~v~~~ 315 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVAS--LSDLVAAVASN 315 (347)
T ss_pred CceEEEecCCCChHHHcCCCCCCEEEEECCEEccC--HHHHHHHHhcc
Confidence 35789999999999999999999999999999976 46777666543
No 132
>KOG3532|consensus
Probab=94.58 E-value=0.05 Score=55.22 Aligned_cols=47 Identities=17% Similarity=0.485 Sum_probs=41.2
Q ss_pred CcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccC
Q psy5022 310 QKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVG 358 (359)
Q Consensus 310 ~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~g 358 (359)
-..|..|.++++|.++.+++||++++|||.+|.. ..++...++...|
T Consensus 399 ~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s--~~q~~~~~~s~~~ 445 (1051)
T KOG3532|consen 399 AVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRS--ERQATRFLQSTTG 445 (1051)
T ss_pred EEEEEEecCCChhhHhcCCCcceEEEecCccchh--HHHHHHHHHhccc
Confidence 3468899999999999999999999999999975 5888888887655
No 133
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=94.25 E-value=0.18 Score=46.97 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=43.4
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeC
Q psy5022 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKE 284 (359)
Q Consensus 231 ~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~ 284 (359)
.++++..+..++|+. |.|+.||.|++|||+++.+ ++...+.++.|++...|.
T Consensus 130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s~~e~i~~v~~~k~Gd~VtI~~~r~ 187 (342)
T COG3480 130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTSSDELIDYVSSKKPGDEVTIDYERH 187 (342)
T ss_pred eeEEEEEccCCcchh--ceeccCCeEEeeCCeecCCHHHHHHHHhccCCCCeEEEEEEec
Confidence 367888888898887 5799999999999999877 566667788999999863
No 134
>KOG0507|consensus
Probab=94.05 E-value=0.019 Score=58.85 Aligned_cols=89 Identities=11% Similarity=-0.050 Sum_probs=72.1
Q ss_pred CcEEEEEEECCeeEEEeCCccceeeccccceeeeEEecCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc---h
Q psy5022 70 STEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE---A 146 (359)
Q Consensus 70 ~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~---a 146 (359)
..++...+|.-|++..+.+++..+..|+..+|-.+..+.. ..++|++++ ......+||+|.-+. +
T Consensus 757 r~~g~~a~s~~gv~~~~~d~k~~~~c~~pe~i~e~~~~~~-----~l~~~a~~~-------~~~~l~~~~~~~vd~~g~~ 824 (854)
T KOG0507|consen 757 RDRGSKALSVTGVEDEFRDHKSLLVCKQPETIIEWLESDV-----MLAPVAADS-------VGALLQTHGYDRVDQKGII 824 (854)
T ss_pred ccccccccccccCCCCCCCcccceeecChhhhcccccchh-----hhhhhhhhh-------hhcchhhccccccccchhH
Confidence 4567788999999999999999999999999999886554 466787774 234567999999433 7
Q ss_pred hhHHhhcchhhHHHHHHHHHhcCC
Q psy5022 147 QFIAQSIGQAFQVAYMEFLKANGI 170 (359)
Q Consensus 147 ~~i~~~ig~af~~ay~~~L~~~gi 170 (359)
.++.+++|+||++||+--+...++
T Consensus 825 ~~~i~t~g~af~~a~~~~~~~q~~ 848 (854)
T KOG0507|consen 825 NRSILTEGTAFKIASEIEKLKQDV 848 (854)
T ss_pred HHHHHhhhhhhhhHHHHHhhhccc
Confidence 788999999999999887765543
No 135
>KOG3532|consensus
Probab=93.81 E-value=0.16 Score=51.77 Aligned_cols=51 Identities=18% Similarity=0.310 Sum_probs=39.1
Q ss_pred CCCCCccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH
Q psy5022 211 KAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA 266 (359)
Q Consensus 211 r~~~~~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~ 266 (359)
+.....+|+.....+ ...+-|..|.+++||.++. |.+||.+++|||.++..
T Consensus 382 ~~~s~~ig~vf~~~~----~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~s 432 (1051)
T KOG3532|consen 382 YDVSSPIGLVFDKNT----NRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIRS 432 (1051)
T ss_pred ccccCceeEEEecCC----ceEEEEEEecCCChhhHhc-CCCcceEEEecCccchh
Confidence 344445565554221 2356788999999999999 99999999999999988
No 136
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=93.52 E-value=0.11 Score=48.06 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=28.4
Q ss_pred EEcCCChhh---cCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Q psy5022 315 SLLRGGIAE---RGGVRVGHRIIEINNQSVVAVPHEKIVNLLA 354 (359)
Q Consensus 315 ~v~~gs~A~---~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~ 354 (359)
++.||..++ ++||++||.+++|||.++.+. +++.++++
T Consensus 210 rl~Pgkd~~lF~~~GLq~GDva~sING~dL~D~--~qa~~l~~ 250 (276)
T PRK09681 210 AVKPGADRSLFDASGFKEGDIAIALNQQDFTDP--RAMIALMR 250 (276)
T ss_pred EECCCCcHHHHHHcCCCCCCEEEEeCCeeCCCH--HHHHHHHH
Confidence 466776553 399999999999999999875 55554444
No 137
>KOG1738|consensus
Probab=93.23 E-value=0.081 Score=53.41 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=51.5
Q ss_pred ccccccCcEEecccccccCcEEEEEcCCChhhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 292 NSQEIFGDELQMFAKKELQKEICSLLRGGIAERGG-VRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 292 ~~~~~~G~~~~~~~~~~~~~~I~~v~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
++..++|+.+... .+...+|..+.+++||.... |..||.++.||++.+.+|.+.-+|+-|+..
T Consensus 210 kp~eglg~~I~Ss--ydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~ 273 (638)
T KOG1738|consen 210 SPSEGLGLYIDSS--YDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRET 273 (638)
T ss_pred CcccCCceEEeee--cCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccC
Confidence 4456678887643 33357899999999999954 999999999999999999999888877754
No 138
>KOG0606|consensus
Probab=93.18 E-value=0.24 Score=53.26 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=54.2
Q ss_pred EEEeeCCCCCccceEEEecC--CCCcC---CcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH-----HHHhh-cCC
Q psy5022 206 EVVVPKAKGEILGVVIVESG--WGSML---PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-----YMEFL-KAN 274 (359)
Q Consensus 206 ~v~l~r~~~~~lG~~i~~~~--~g~~~---~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~-----~~~~~-~~~ 274 (359)
.+.+.+. +..+||++..-. .|... --..|..|.++|||..+| |+.||.|+.|||+++.+ ++..+ +++
T Consensus 629 pI~i~~~-~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~g 706 (1205)
T KOG0606|consen 629 PITIHFS-GKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSG 706 (1205)
T ss_pred ceeeecc-ccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcC
Confidence 3667766 568998875321 23221 134788999999999999 99999999999999988 44433 345
Q ss_pred CeEEEEEEe
Q psy5022 275 GIEDHSFVK 283 (359)
Q Consensus 275 ~~v~l~v~~ 283 (359)
..+.+.+.+
T Consensus 707 n~v~~~ttp 715 (1205)
T KOG0606|consen 707 NKVTLRTTP 715 (1205)
T ss_pred CeeEEEeec
Confidence 567777653
No 139
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=91.94 E-value=0.31 Score=43.66 Aligned_cols=47 Identities=17% Similarity=0.293 Sum_probs=39.6
Q ss_pred CCCChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeCcc
Q psy5022 239 APAGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKEMD 286 (359)
Q Consensus 239 ~~~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~~~ 286 (359)
.+++..+..| ||.||..++||+.++.+ +++.+++.....++|.|+..
T Consensus 215 kd~slF~~sg-lq~GDIavaiNnldltdp~~m~~llq~l~~m~s~qlTv~R~G~ 267 (275)
T COG3031 215 KDGSLFYKSG-LQRGDIAVAINNLDLTDPEDMFRLLQMLRNMPSLQLTVIRRGK 267 (275)
T ss_pred CCcchhhhhc-CCCcceEEEecCcccCCHHHHHHHHHhhhcCcceEEEEEecCc
Confidence 4567888899 99999999999999877 77888888889999988643
No 140
>KOG1320|consensus
Probab=91.32 E-value=0.37 Score=47.83 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=40.2
Q ss_pred cEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH------HHHhhcCCCeEEEEEEeC
Q psy5022 232 TVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA------YMEFLKANGIEDHSFVKE 284 (359)
Q Consensus 232 ~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~------~~~~~~~~~~v~l~v~~~ 284 (359)
.++|..|.|++++...+ +..||.|.+|||+++.+ +++.+...+.+.+...+.
T Consensus 399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~~~l~~~i~~~~~~~~v~vl~~~~ 456 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNLKHLYELIEECSTEDKVAVLDRRS 456 (473)
T ss_pred EEEEEEeccCCCccccc-ccCCCEEEEECCEEeechHHHHHHHHhcCcCceEEEEEecC
Confidence 46788999999999999 99999999999999988 444444444555554443
No 141
>KOG3557|consensus
Probab=89.11 E-value=0.47 Score=48.17 Aligned_cols=118 Identities=17% Similarity=0.266 Sum_probs=80.3
Q ss_pred EEEEeeeEEEEeccCCChhh-HHHHHHHHHHHhCCCCCCCCCcEEEEEEECCeeEEEeCCccceeeccccceeeeEEecC
Q psy5022 30 LFRLKFLGSVQVDEDDPKCC-KRRVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIG 108 (359)
Q Consensus 30 ~f~~kylGs~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~~~~~ 108 (359)
.|.+.-|-.+-+....+..- ..+++|+.... + .+ .-..++..|.+..+-+.++|..|++.+..+++..|-+|++.-
T Consensus 47 qyrveHL~Tf~~~ksd~i~~~eD~~rkL~~ld-~-~~-~vWsQ~miLqv~d~~v~llD~Es~~ele~fpl~~iq~~~a~~ 123 (721)
T KOG3557|consen 47 QYRVEHLATFILGKSDGITGPEDAIRKLLQLD-A-QG-GVWSQDMILQVDDQWVLLLDIETKEELESFPLSTIQRPQAVL 123 (721)
T ss_pred cccchhhhheecccccccccHHHHhHHHHhhc-c-cc-ccccccceeEeccCceeeechhhhHHHhhcCcchhhhhhhhc
Confidence 46666666666644333322 33455543222 2 12 224567889999999999999999999999999999999776
Q ss_pred CceEEeeecccccccCCCCCCCCCCCcceeeEeeccc--hhhHHhhcchhh
Q psy5022 109 DLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE--AQFIAQSIGQAF 157 (359)
Q Consensus 109 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~--a~~i~~~ig~af 157 (359)
+.+-|+.. ..+| .+.+...+..-|.|+|++ |+.|.+.|-+|.
T Consensus 124 ~~~~y~si--L~lv-----~qep~~~r~d~h~Fq~~ev~Aell~edi~~al 167 (721)
T KOG3557|consen 124 NMCSYNSI--LSLV-----VQEPGRSRPDVHIFQCQEVGAELLREDIQGAL 167 (721)
T ss_pred ccccccch--hhee-----eccCCCCCCceeEEeeccchhHHHHHhHHHHH
Confidence 54444332 3344 344667788899999998 888887766653
No 142
>KOG1738|consensus
Probab=89.06 E-value=0.55 Score=47.65 Aligned_cols=57 Identities=21% Similarity=0.266 Sum_probs=45.3
Q ss_pred CCCccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH-----HHHhhcC
Q psy5022 213 KGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA-----YMEFLKA 273 (359)
Q Consensus 213 ~~~~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~-----~~~~~~~ 273 (359)
+++++|+-|... + ....+|..+.+++||+.++.|..||.|++||+..+.+ ++..++.
T Consensus 211 p~eglg~~I~Ss-y---dg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~ 272 (638)
T KOG1738|consen 211 PSEGLGLYIDSS-Y---DGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRE 272 (638)
T ss_pred cccCCceEEeee-c---CCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhccc
Confidence 357888888742 1 2356889999999999999999999999999999777 5555553
No 143
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=86.58 E-value=1 Score=42.09 Aligned_cols=43 Identities=12% Similarity=0.370 Sum_probs=36.5
Q ss_pred CcEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy5022 310 QKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLAT 355 (359)
Q Consensus 310 ~~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~ 355 (359)
+.|+..+..++++. +-|+.||.|++|||+++.+ .+++.+++++
T Consensus 131 gvyv~~v~~~~~~~-gkl~~gD~i~avdg~~f~s--~~e~i~~v~~ 173 (342)
T COG3480 131 GVYVLSVIDNSPFK-GKLEAGDTIIAVDGEPFTS--SDELIDYVSS 173 (342)
T ss_pred eEEEEEccCCcchh-ceeccCCeEEeeCCeecCC--HHHHHHHHhc
Confidence 56888888888874 4699999999999999976 5899988875
No 144
>KOG3834|consensus
Probab=86.42 E-value=3.4 Score=40.28 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=50.9
Q ss_pred ccEEEEeeCCCCCc---cceEEEecCC-CCcCCcEEEEEECCCChhhhcCCCC-CCCEEEEE-CCccHHH--H--HHhhc
Q psy5022 203 LQKEVVVPKAKGEI---LGVVIVESGW-GSMLPTVVIANLAPAGAAARCGQLN-IGDQIIAV-NGVSLVA--Y--MEFLK 272 (359)
Q Consensus 203 ~~~~v~l~r~~~~~---lG~~i~~~~~-g~~~~~~~V~~v~~~s~A~~~G~L~-~GD~Il~V-ng~~v~~--~--~~~~~ 272 (359)
..|++.|.+....+ ||+.|.--.+ +.....+-|-.|.++|||+++| |+ .+|-|+-+ |...-.. + +-...
T Consensus 77 ~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAg-l~~~~DYivG~~~~~~~~~eDl~~lIesh 155 (462)
T KOG3834|consen 77 EVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAG-LRPYTDYIVGIWDAVMHEEEDLFTLIESH 155 (462)
T ss_pred eeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcc-cccccceEecchhhhccchHHHHHHHHhc
Confidence 45677787765545 8887762111 1122345667899999999999 77 78999988 6644333 2 22234
Q ss_pred CCCeEEEEEE
Q psy5022 273 ANGIEDHSFV 282 (359)
Q Consensus 273 ~~~~v~l~v~ 282 (359)
.++.+.|.|.
T Consensus 156 e~kpLklyVY 165 (462)
T KOG3834|consen 156 EGKPLKLYVY 165 (462)
T ss_pred cCCCcceeEe
Confidence 5567777776
No 145
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=86.28 E-value=1.3 Score=42.80 Aligned_cols=45 Identities=20% Similarity=0.385 Sum_probs=36.5
Q ss_pred cEEEEEcCCChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Q psy5022 311 KEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSV 357 (359)
Q Consensus 311 ~~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s~ 357 (359)
..+..+..+++|..+++++||+|+++|+..+..+ ++....+..+.
T Consensus 131 ~~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~--~~~~~~~~~~~ 175 (375)
T COG0750 131 PVVGEVAPKSAAALAGLRPGDRIVAVDGEKVASW--DDVRRLLVAAA 175 (375)
T ss_pred CeeeecCCCCHHHHcCCCCCCEEEeECCEEccCH--HHHHHHHHhcc
Confidence 3555799999999999999999999999999875 66655555443
No 146
>KOG2921|consensus
Probab=85.37 E-value=1 Score=43.34 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=38.4
Q ss_pred CcEEEEEcCCChhhc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy5022 310 QKEICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356 (359)
Q Consensus 310 ~~~I~~v~~gs~A~~-~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~s 356 (359)
+..|.+|...||+.- -||.+||+|..+||.+|.+ .++..+.++.+
T Consensus 221 gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~--v~dW~ecl~ts 266 (484)
T KOG2921|consen 221 GVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHK--VSDWLECLATS 266 (484)
T ss_pred eEEEEeccccCCCcCcccCCccceEEecCCcccCC--HHHHHHHHHhh
Confidence 556889999999876 6899999999999999976 48888888774
No 147
>PF12812 PDZ_1: PDZ-like domain
Probab=82.44 E-value=2.5 Score=31.37 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=27.5
Q ss_pred EEEEEECCCChhhhcCCCCCCCEEEEECCccHHH
Q psy5022 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA 266 (359)
Q Consensus 233 ~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~ 266 (359)
.++.....++++...| +..|-.|.+|||+++.+
T Consensus 32 gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~ 64 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPD 64 (78)
T ss_pred EEEEEecCCChhhhCC-CCCCeEEEeECCcCCcC
Confidence 3444567888888877 99999999999999887
No 148
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=80.25 E-value=24 Score=27.30 Aligned_cols=74 Identities=12% Similarity=0.214 Sum_probs=55.2
Q ss_pred EEEEEEECCeeEEEeCCccceeeccccceeeeEEecCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccchhhHHh
Q psy5022 72 EVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDEAQFIAQ 151 (359)
Q Consensus 72 ~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~a~~i~~ 151 (359)
+..|.|+...|.+.+..+...+..-||..|-=|+.+.+ .|.|.+... + ...+- =+.|.+.+|++|..
T Consensus 23 ~~~L~l~~~~l~L~~~~~~~~~~~Wpl~~lRryG~~~~--------~F~fEaGRr-c--~tG~G--~f~f~t~~a~~I~~ 89 (100)
T PF02174_consen 23 PYLLCLTPDELILIDPQSGEPILEWPLRYLRRYGRDDG--------IFSFEAGRR-C--PTGEG--LFWFQTPDAEEIFE 89 (100)
T ss_dssp EEEEEEESSEEEEEETTTTEEEEEEEGGGEEEEEEETT--------EEEEEESTT-S--TTCSE--EEEEEESTHHHHHH
T ss_pred EEEEEECCCEEEEecCCCCceEEEEEhHHhhhhccCCC--------EEEEEECCc-C--CCCCc--EEEEEeCCHHHHHH
Confidence 67899999999999999999999999999998988776 444443211 1 11222 24788888999988
Q ss_pred hcchhhH
Q psy5022 152 SIGQAFQ 158 (359)
Q Consensus 152 ~ig~af~ 158 (359)
+|-++.+
T Consensus 90 ~v~~~i~ 96 (100)
T PF02174_consen 90 TVERAIK 96 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766643
No 149
>KOG4436|consensus
Probab=80.03 E-value=0.64 Score=48.44 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=53.6
Q ss_pred eEEEeCCccceeeccccceeeeEEecCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc---hhhHHhhcchhhH
Q psy5022 82 IMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE---AQFIAQSIGQAFQ 158 (359)
Q Consensus 82 i~~~~~~t~~~~~~~~l~~IS~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~---a~~i~~~ig~af~ 158 (359)
+-.+.++|++++..-.-++||+|+|... ....|+||++.. .-+.+..+.|+||.|.. -.+...++-+||.
T Consensus 79 ~~~iSpD~kel~ak~e~~~is~eSq~~~-----~~~~~g~~sr~~--sg~s~~~~v~~v~~~~n~s~~DE~m~Tl~~a~s 151 (948)
T KOG4436|consen 79 APLISPDTKELLAKKEFKNISGESQSIS-----HVSHFGFISRES--SGNSQLEAVCYVFQCQNESLVDEDMWTLWGAFS 151 (948)
T ss_pred cCCCCccHHHHhhhhhhhhccchhhhhh-----hhhhcCcccccC--CCCCcccceeeeeccCCCcchhhhHHHHHHHHh
Confidence 3446678888888888899999999877 667888886432 12234459999999866 6678888888888
Q ss_pred H
Q psy5022 159 V 159 (359)
Q Consensus 159 ~ 159 (359)
.
T Consensus 152 ~ 152 (948)
T KOG4436|consen 152 A 152 (948)
T ss_pred h
Confidence 7
No 150
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=72.50 E-value=24 Score=25.51 Aligned_cols=66 Identities=18% Similarity=0.157 Sum_probs=44.0
Q ss_pred CCcEEEEEEECCeeEEEeCCccceee--ccccceeeeEEecCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccc
Q psy5022 69 PSTEVDLFISTEKIMVLNTDLKEIMM--DHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE 145 (359)
Q Consensus 69 ~~~~v~l~iS~~gi~~~~~~t~~~~~--~~~l~~IS~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~ 145 (359)
.+++.-+.++...+.+.+.+...... .+++..+. |+...+.. =.+..|..+. .+. ...||+|.++.
T Consensus 18 ~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~--~~~~~F~i~~-----~~~---~~~~~~~~~~~ 85 (99)
T cd00900 18 RWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGS--DDPNCFAIVT-----KDR---GRRVFVFQADS 85 (99)
T ss_pred CceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceE-EEECCCCC--CCCceEEEEC-----CCC---CcEEEEEEcCC
Confidence 46788899999999999998866665 78999999 66443200 0123343332 111 35799999865
No 151
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=70.31 E-value=8.4 Score=37.21 Aligned_cols=32 Identities=44% Similarity=0.721 Sum_probs=29.3
Q ss_pred EEEEECCCChhhhcCCCCCCCEEEEECCccHHH
Q psy5022 234 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA 266 (359)
Q Consensus 234 ~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~ 266 (359)
++..+..+++|..+| ++.||+|+++|+.++..
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~ 163 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVAS 163 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEccC
Confidence 455789999999999 99999999999999887
No 152
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=70.20 E-value=6 Score=35.66 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=26.2
Q ss_pred ChhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy5022 320 GIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLAT 355 (359)
Q Consensus 320 s~A~~~gL~~GD~Il~INg~~v~~~~~~~~v~~l~~ 355 (359)
+.=+..||+.||..++||+.++++ .++..++++.
T Consensus 218 slF~~sglq~GDIavaiNnldltd--p~~m~~llq~ 251 (275)
T COG3031 218 SLFYKSGLQRGDIAVAINNLDLTD--PEDMFRLLQM 251 (275)
T ss_pred chhhhhcCCCcceEEEecCcccCC--HHHHHHHHHh
Confidence 344558999999999999999975 4666666653
No 153
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=68.66 E-value=27 Score=27.44 Aligned_cols=75 Identities=11% Similarity=0.136 Sum_probs=52.7
Q ss_pred cEEEEEEECCeeEEEeCCccceeeccccceeeeEEecCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccchhhHH
Q psy5022 71 TEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDEAQFIA 150 (359)
Q Consensus 71 ~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~a~~i~ 150 (359)
-...|.++.+.|.+.+..+...+..-|+..|==|..+.+ .|.|-+... +..+. . =+.|++..+++|+
T Consensus 21 G~y~L~lt~~~l~L~~~~~~~~~~~wpl~~lRRyG~~~~--------~FsfEaGRr-c~tG~-G---~f~f~t~~~~~I~ 87 (104)
T cd00824 21 GSYRLCLTSKELTLVKLGSRVALVVWPLMFLRRYGYDSN--------LFSFEAGRR-CVTGE-G---IFTFQTDRAEEIF 87 (104)
T ss_pred eeEEEEECCCEEEEEecCCCceEEEeehHHeeecccCCC--------EEEEEccCc-CCCCC-C---EEEEEcCCHHHHH
Confidence 367899999999999999999999999999999998877 454443211 11111 1 2467777677777
Q ss_pred hhcchhhH
Q psy5022 151 QSIGQAFQ 158 (359)
Q Consensus 151 ~~ig~af~ 158 (359)
+.+-.+..
T Consensus 88 ~~v~~~i~ 95 (104)
T cd00824 88 QNVHETIL 95 (104)
T ss_pred HHHHHHHH
Confidence 66555443
No 154
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=61.23 E-value=13 Score=32.37 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=25.4
Q ss_pred CcEEEEEECCCChhhhcCCCCCCCEEEEE
Q psy5022 231 PTVVIANLAPAGAAARCGQLNIGDQIIAV 259 (359)
Q Consensus 231 ~~~~V~~v~~~s~A~~~G~L~~GD~Il~V 259 (359)
..+.|..+..||||+++| +..|+.|++|
T Consensus 122 ~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v 149 (183)
T PF11874_consen 122 GKVIVDEVEFGSPAEKAG-IDFDWEITEV 149 (183)
T ss_pred CEEEEEecCCCCHHHHcC-CCCCcEEEEE
Confidence 467899999999999999 9999999876
No 155
>smart00310 PTBI Phosphotyrosine-binding domain (IRS1-like).
Probab=60.39 E-value=54 Score=25.43 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=51.6
Q ss_pred EEEEEEECCeeEEEeCCccceeeccccceeeeEEecCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccchhhHHh
Q psy5022 72 EVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDEAQFIAQ 151 (359)
Q Consensus 72 ~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~a~~i~~ 151 (359)
...|.++.+.|.+.+.+++..+..-|+..|==|..+.+ .|.|-+... +..+. . =+.|++..|++|..
T Consensus 21 ~y~L~lt~~~L~L~~~~~~~~~~~wpl~~lRRyG~~~~--------~FsfEaGRr-c~tG~-G---~f~f~t~~a~~i~~ 87 (98)
T smart00310 21 SYRLRLTSETLVLWRLNPRVELVVWPLLSLRRYGRDKN--------FFFFEAGRR-CVSGP-G---EFTFQTVVAQEIFQ 87 (98)
T ss_pred eEEEEECCcEEEEEecCCCccEEEeehhHeeeecCCCC--------EEEEEccCc-CCCCC-C---EEEEEcCcHHHHHH
Confidence 67899999999999998999999999999999998877 444443221 11111 1 23566766999887
Q ss_pred hcchh
Q psy5022 152 SIGQA 156 (359)
Q Consensus 152 ~ig~a 156 (359)
+|-.|
T Consensus 88 ~v~~a 92 (98)
T smart00310 88 LVLEA 92 (98)
T ss_pred HHHHH
Confidence 77544
No 156
>KOG0792|consensus
Probab=59.11 E-value=5.4 Score=43.18 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=51.6
Q ss_pred cccccCcEEecccccc-----cCcEEEEEc-------------CCChhhcCC--CCCCCEEEEECCEECCCCCHHHHHHH
Q psy5022 293 SQEIFGDELQMFAKKE-----LQKEICSLL-------------RGGIAERGG--VRVGHRIIEINNQSVVAVPHEKIVNL 352 (359)
Q Consensus 293 ~~~~~G~~~~~~~~~~-----~~~~I~~v~-------------~gs~A~~~g--L~~GD~Il~INg~~v~~~~~~~~v~~ 352 (359)
+.+.|||.+.++.+-. .+..+.++. ++++|+.+. +..||.++.|||..+....|+..+.+
T Consensus 714 ~~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~ 793 (1144)
T KOG0792|consen 714 PPGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSL 793 (1144)
T ss_pred CCccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHH
Confidence 3677888888765543 345566677 888888854 99999999999999999999999999
Q ss_pred HHhc
Q psy5022 353 LATS 356 (359)
Q Consensus 353 l~~s 356 (359)
|++.
T Consensus 794 irs~ 797 (1144)
T KOG0792|consen 794 IRSP 797 (1144)
T ss_pred Hhhh
Confidence 9864
No 157
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=48.11 E-value=29 Score=30.21 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=29.7
Q ss_pred cCcEEecccccccCcEEEEEcCCChhhcCCCCCCCEEEEEC
Q psy5022 297 FGDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEIN 337 (359)
Q Consensus 297 ~G~~~~~~~~~~~~~~I~~v~~gs~A~~~gL~~GD~Il~IN 337 (359)
.|+.+.. ......|..|.-||+|+++|+.-|++|.+|-
T Consensus 113 ~GL~l~~---e~~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~ 150 (183)
T PF11874_consen 113 AGLTLME---EGGKVIVDEVEFGSPAEKAGIDFDWEITEVE 150 (183)
T ss_pred CCCEEEe---eCCEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence 4666653 1224589999999999999999999998874
No 158
>KOG4407|consensus
Probab=48.09 E-value=22 Score=39.63 Aligned_cols=34 Identities=6% Similarity=-0.018 Sum_probs=29.4
Q ss_pred EEEEEcCCChhhcCCCCCCCEEEEECCEECCCCC
Q psy5022 312 EICSLLRGGIAERGGVRVGHRIIEINNQSVVAVP 345 (359)
Q Consensus 312 ~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~~~~ 345 (359)
++..+..++++..+|+..||.|..|||..+.+-+
T Consensus 99 ~~~Q~~s~~~~~nsG~~s~~~v~~itG~e~~~~T 132 (1973)
T KOG4407|consen 99 NWPQEASSAAGSNSGSSSSVGVAGITGLEPTSPT 132 (1973)
T ss_pred ccchhcccCcccccCcccccceeeecccccCCCc
Confidence 4566778888899999999999999999988765
No 159
>KOG4815|consensus
Probab=41.32 E-value=12 Score=34.84 Aligned_cols=20 Identities=40% Similarity=0.389 Sum_probs=17.4
Q ss_pred hhhHHhhcchhhHHHHHHHH
Q psy5022 146 AQFIAQSIGQAFQVAYMEFL 165 (359)
Q Consensus 146 a~~i~~~ig~af~~ay~~~L 165 (359)
|..|..+|||||++|.+-..
T Consensus 11 amrivrtigqafevchk~aq 30 (511)
T KOG4815|consen 11 AMRIVRTIGQAFEVCHKLAQ 30 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999986553
No 160
>cd01203 DOK_PTB Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. This domain has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules The DOK family of eukaryotic signaling molecules have an N-terminal PH domain, followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=40.72 E-value=1.4e+02 Score=23.37 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=50.1
Q ss_pred EEEEEEECCeeEEEeCCccceeeccccceeeeEEecCCceEEeeecccccccCCCCCCCCCCCcceeeEeeccchhhHHh
Q psy5022 72 EVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDEAQFIAQ 151 (359)
Q Consensus 72 ~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~Chvf~s~~a~~i~~ 151 (359)
+..|.|....+.+.|.++++.++.-|++.+-=-..++. .|.|.+... +..+ + -=+.|.+..|++|..
T Consensus 22 ~y~L~v~~~~l~L~d~~~~~~l~~WP~~~LRryG~d~~--------~FsFEAGRr-C~tG--e--G~f~F~t~~~~~if~ 88 (104)
T cd01203 22 SYMLRMGPTELQLKSEDLGATLYMWPYRFLRKYGRDKG--------KFSFEAGRR-CTSG--E--GVFTFDTTQGNEIFR 88 (104)
T ss_pred eEEEEEcCCEEEEEcCCCCcEEEEeehHhhhhhcccCC--------EEEEEecCc-CCCC--C--cEEEEecCCHHHHHH
Confidence 67899999999999999999999988876644443444 565554221 1111 1 136788888888887
Q ss_pred hcchhh
Q psy5022 152 SIGQAF 157 (359)
Q Consensus 152 ~ig~af 157 (359)
.|-.+.
T Consensus 89 ~v~~~i 94 (104)
T cd01203 89 AVEAAI 94 (104)
T ss_pred HHHHHH
Confidence 665553
No 161
>KOG4371|consensus
Probab=36.51 E-value=34 Score=37.33 Aligned_cols=57 Identities=26% Similarity=0.466 Sum_probs=41.6
Q ss_pred EEeeCCCCCccceEEEecCCCCcCCcEEEEEECCCChhhhcCCCCCCCEEEEECCccHHH
Q psy5022 207 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA 266 (359)
Q Consensus 207 v~l~r~~~~~lG~~i~~~~~g~~~~~~~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~ 266 (359)
+.+.+++--++|+.+.. .....++++..+...+.|...|+++.||++...+|+++.+
T Consensus 1249 ~~~~~~p~~~~~~~~~~---~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~ 1305 (1332)
T KOG4371|consen 1249 VMLLKKPMATLGLSLAK---RTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDG 1305 (1332)
T ss_pred heeeecccccccccccc---cCcCCceeeecccccccccccccccccceeeccCCccCCC
Confidence 33444443455555542 1233578999888899999999999999999999999877
No 162
>KOG2921|consensus
Probab=33.18 E-value=35 Score=33.19 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=27.5
Q ss_pred cEEEEEECCCChhhhc-CCCCCCCEEEEECCccHHH
Q psy5022 232 TVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSLVA 266 (359)
Q Consensus 232 ~~~V~~v~~~s~A~~~-G~L~~GD~Il~Vng~~v~~ 266 (359)
++.|..|...||+.-- | |.+||.|.++||-+|.+
T Consensus 221 gV~Vtev~~~Spl~gprG-L~vgdvitsldgcpV~~ 255 (484)
T KOG2921|consen 221 GVTVTEVPSVSPLFGPRG-LSVGDVITSLDGCPVHK 255 (484)
T ss_pred eEEEEeccccCCCcCccc-CCccceEEecCCcccCC
Confidence 5678888877776433 6 99999999999988766
No 163
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=32.24 E-value=27 Score=32.94 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=27.8
Q ss_pred EEEEEcCCChhhcCCCCCCCEEEEECCEECC
Q psy5022 312 EICSLLRGGIAERGGVRVGHRIIEINNQSVV 342 (359)
Q Consensus 312 ~I~~v~~gs~A~~~gL~~GD~Il~INg~~v~ 342 (359)
-+.+|.+-+||+++|.-.||-|+-+|+.++.
T Consensus 66 ~~lrv~~~~~~e~~~~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 66 EVLRVNPESPAEKAGMVVGDYILGINEDPLR 96 (417)
T ss_pred hheeccccChhHhhccccceeEEeecCCcHH
Confidence 4678999999999999999999999988763
No 164
>COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.48 E-value=50 Score=34.89 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=20.8
Q ss_pred CCChhhcCCCCCCCEEEE-ECCEECC
Q psy5022 318 RGGIAERGGVRVGHRIIE-INNQSVV 342 (359)
Q Consensus 318 ~gs~A~~~gL~~GD~Il~-INg~~v~ 342 (359)
+.+.|++-|||.||++.- |+|++++
T Consensus 602 e~~~A~~LglKLGDtvTf~v~gq~i~ 627 (829)
T COG3127 602 EEGEAKRLGLKLGDTVTFMVLGQNIT 627 (829)
T ss_pred hHhHHHHhCCccCCEEEEEeccceEE
Confidence 456788899999999875 9999875
No 165
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=24.46 E-value=2.2e+02 Score=21.21 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=28.3
Q ss_pred CcEEEEEEECCeeEEEeCCccceeeccccceeeeEEecCC
Q psy5022 70 STEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGD 109 (359)
Q Consensus 70 ~~~v~l~iS~~gi~~~~~~t~~~~~~~~l~~IS~~~~~~~ 109 (359)
.+++.|-|+..||.+.+... .+..++-.+|--.+..++
T Consensus 14 g~~~~lGV~~~Gi~v~~~~~--~~~~f~W~~I~~isf~~k 51 (92)
T cd00836 14 GTELLLGVTAEGILVYDDGT--PINEFPWPEIRKISFKRK 51 (92)
T ss_pred CCeEEEEEeCCCcEEecCCC--EEEEEEcccceEEEEcCC
Confidence 56899999999999999875 566676665555554443
No 166
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=21.13 E-value=74 Score=30.09 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=27.7
Q ss_pred EEEEECCCChhhhcCCCCCCCEEEEECCccHHH
Q psy5022 234 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA 266 (359)
Q Consensus 234 ~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~ 266 (359)
-+-.|.+-+||.++| .-.||-|+-+|+-++.-
T Consensus 66 ~~lrv~~~~~~e~~~-~~~~dyilg~n~Dp~~f 97 (417)
T COG5233 66 EVLRVNPESPAEKAG-MVVGDYILGINEDPLRF 97 (417)
T ss_pred hheeccccChhHhhc-cccceeEEeecCCcHHH
Confidence 345678999999999 99999999999988754
No 167
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=20.86 E-value=1.8e+02 Score=23.61 Aligned_cols=48 Identities=15% Similarity=0.136 Sum_probs=31.9
Q ss_pred EEEEECCCChhhhcCCCCCCCEEEEECCccHHH---HHHhhcCCCeEEEEEE
Q psy5022 234 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA---YMEFLKANGIEDHSFV 282 (359)
Q Consensus 234 ~V~~v~~~s~A~~~G~L~~GD~Il~Vng~~v~~---~~~~~~~~~~v~l~v~ 282 (359)
-+..|-.+.|+...- -+.|++|+.+||-++.- .+....-.-.+.|++.
T Consensus 49 C~agvg~gv~~l~~~-arsgrrIlalDGCp~~Catk~l~~AGv~~D~~l~it 99 (135)
T COG4273 49 CTAGVGAGVPALVDA-ARSGRRILALDGCPLRCATKCLAEAGVQADVHLTIT 99 (135)
T ss_pred eeecccCCcHHHHHH-hhcCCceEEecCChHHHHHHHHHHhccceeEEEEeh
Confidence 344566777877766 78999999999998876 3343333334555543
Done!