RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5022
(359 letters)
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 238 bits (608), Expect = 5e-76
Identities = 171/362 (47%), Positives = 222/362 (61%), Gaps = 28/362 (7%)
Query: 25 LGPGTLFRLKFLGSVQVD---------------EDDPKCCKRRVKKVMVEEAAPEGETQP 69
L G +F +LGS Q+ E + + + + ++A EG+ Q
Sbjct: 5 LIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANSEGDAQT 64
Query: 70 STEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPK 129
TEVDLFIST++I VLN D +E MMDHALRTISYIADIG++VVLMARRR + + +
Sbjct: 65 LTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSASQDCIE 124
Query: 130 IS-------RTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGIEDHSFVKEMDYQ 182
+ + KMICHVFES++AQ IAQSIGQAF VAY EFL+ANGI + +Y
Sbjct: 125 TTPGAQEGKKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDL-SQKEYS 183
Query: 183 EVLNSQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAG 242
+++N+QE++ D+L F+ E KE+ + K KGEILGVV+VESGWGS+LPTV++AN+ G
Sbjct: 184 DIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGG 243
Query: 243 AAARCGQLNIGDQIIAVNGVSLVAY-----MEFLKANGIEDHSFVKEMDYQEVLNSQEIF 297
AAR G+L+IGDQI+++NG SLV +K + + + V
Sbjct: 244 PAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKR 303
Query: 298 GDELQMFAKKELQKEICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSV 357
D ICSL+RGGIAERGGVRVGHRIIEIN QSVVA HEKIV L+ SV
Sbjct: 304 PDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSV 363
Query: 358 GE 359
GE
Sbjct: 364 GE 365
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB
domain, chimera protein, protein transport; HET: IPA
GOL; 1.90A {Rattus norvegicus}
Length = 162
Score = 139 bits (351), Expect = 2e-40
Identities = 88/169 (52%), Positives = 111/169 (65%), Gaps = 13/169 (7%)
Query: 25 LGPGTLFRLKFLGSVQVDED--DPKCCKRRVKKVMVEEAAPEGETQPSTEVDLFISTEKI 82
L G +F +LGS Q+ D K + + V PEGE+QP TEVDLFIST++I
Sbjct: 5 LIDGIIFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKPEGESQPMTEVDLFISTQRI 64
Query: 83 MVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFE 142
VLN D +E MMDH LRTISYIADIG++VVLMARRR KMICHVFE
Sbjct: 65 KVLNADTQEPMMDHPLRTISYIADIGNIVVLMARRR----------MPRSQYKMICHVFE 114
Query: 143 SDEAQFIAQSIGQAFQVAYMEFLKANGIEDHSFVKEMDYQEVLNSQEIF 191
S++AQ IAQSIGQAF VAY EFL+ANGI + + +Y ++LN+Q+++
Sbjct: 115 SEDAQLIAQSIGQAFSVAYQEFLRANGINPED-LSQKEYSDLLNTQDMY 162
Score = 36.7 bits (84), Expect = 0.004
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 265 VAYMEFLKANGIEDHSFVKEMDYQEVLNSQEIF 297
VAY EFL+ANGI + + +Y ++LN+Q+++
Sbjct: 131 VAYQEFLRANGINPED-LSQKEYSDLLNTQDMY 162
>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*
Length = 172
Score = 136 bits (342), Expect = 4e-39
Identities = 88/170 (51%), Positives = 106/170 (62%), Gaps = 25/170 (14%)
Query: 25 LGPGTLFRLKFLGSVQVDEDDPKCCKRRVKKVMVEEA----------------APEGETQ 68
L G +F +LGS Q+ K + V+ + +EA APEGE+Q
Sbjct: 4 LIDGIIFAANYLGSTQLLS--DKTPSKNVRMMQAQEAVSRIKMAQKLAKSRKKAPEGESQ 61
Query: 69 PSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPP 128
P TEVDLFI T++I VLN D +E MMDH LRTISYIADIG++VVLMARRR + E
Sbjct: 62 PMTEVDLFILTQRIKVLNADTQETMMDHPLRTISYIADIGNIVVLMARRRIPRSNSQENV 121
Query: 129 KIS-------RTPKMICHVFESDEAQFIAQSIGQAFQVAYMEFLKANGIE 171
+ S R KMICHVFES++AQ IAQSIGQAF VAY EFL+ANGI
Sbjct: 122 EASHPSQDGKRQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGIN 171
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper
motif 1; APPL, cell cycle; 2.00A {Homo sapiens}
Length = 175
Score = 122 bits (306), Expect = 9e-34
Identities = 35/175 (20%), Positives = 70/175 (40%), Gaps = 9/175 (5%)
Query: 7 HHVGCTQALPEDPVVDTGLGPGTLFRLKFLGSVQVDEDD-PKCCKRRVKKVMVEEAAPEG 65
HH + +P + LF ++FLGS++V DD P +++++ A
Sbjct: 7 HHHHSSGLVPRGSHMTEDSILHQLFIVRFLGSMEVKSDDHPDVVYETMRQILAARAIHNI 66
Query: 66 ETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEAD 125
TE L ++ + + +++ + + L + A + L FV +
Sbjct: 67 --FRMTESHLLVTCDCLKLIDPQTQVTRLTFPLPCVVLYATHQENKRLFG---FVLR--T 119
Query: 126 EPPKISRTPKMICHVFESD-EAQFIAQSIGQAFQVAYMEFLKANGIEDHSFVKEM 179
+ +C++FES+ E + I S+G A Q+A L E ++ +
Sbjct: 120 SSGRSESNLSSVCYIFESNNEGEKICDSVGLAKQIALHAELDRRASEKQKEIERV 174
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus}
SCOP: b.55.1.2 PDB: 1m7e_A
Length = 160
Score = 112 bits (282), Expect = 2e-30
Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 14/158 (8%)
Query: 17 EDPVVDTGLGPGTLFRLKFLGSVQVDEDD-PKCCKRRVKKVMVEEAAPEGETQPSTEVDL 75
++ ++ G G ++ K +G V + K + + K+ AA + Q + +
Sbjct: 5 DEYLLARFKGDGVKYKAKLIGIDDVPDARGDKMSQDSMMKLKGMAAAGRSQGQHKQRIWV 64
Query: 76 FISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPK 135
IS I +++ I +H + IS+IA +V +
Sbjct: 65 NISLSGIKIIDEKTGVIEHEHPVNKISFIARDVTDNRAFG---YVCGG---------EGQ 112
Query: 136 MICHVFES-DEAQFIAQSIGQAFQVAYMEFLKANGIED 172
++ +A+ + + FQV Y K +
Sbjct: 113 HQFFAIKTGQQAEPLVVDLKDLFQVIYNVKKKEEDKKK 150
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.84A {Homo sapiens}
Length = 160
Score = 108 bits (271), Expect = 1e-28
Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 9/151 (5%)
Query: 30 LFRLKFLGSVQVDEDD-PKCCKRRVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTD 88
LF ++FLGS++V DD P +++++ A TE L ++ + + +++
Sbjct: 17 LFIVRFLGSMEVKSDDHPDVVYETMRQILAARAI--HNIFRMTESHLLVTCDCLKLIDPQ 74
Query: 89 LKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESD-EAQ 147
+ + L + A + L FV + + +C++FES+ E +
Sbjct: 75 TQVTRLTFPLPCVVLYATHQENKRLFG---FVLR--TSSGRSESNLSSVCYIFESNNEGE 129
Query: 148 FIAQSIGQAFQVAYMEFLKANGIEDHSFVKE 178
I S+G A Q+A L E ++
Sbjct: 130 KICDSVGLAKQIALHAELDRRASEKQKEIER 160
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus
musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A*
Length = 152
Score = 105 bits (263), Expect = 1e-27
Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 14/146 (9%)
Query: 25 LGPGTLFRLKFLGSVQVDEDD-PKCCKRRVKKVMVEEAAPEGETQPSTEVDLFISTEKIM 83
G G ++ K +G +V K C+ + K+ A + + ++ L IS I
Sbjct: 14 KGEGVRYKAKLIGIDEVSAARGDKLCQDSMMKLKGVVAGARSKGEHKQKIFLTISFGGIK 73
Query: 84 VLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFES 143
+ + + HA+ ISYIA +V + ++
Sbjct: 74 IFDEKTGALQHHHAVHEISYIAKDITDHRAFG---YVCGKEG---------NHRFVAIKT 121
Query: 144 -DEAQFIAQSIGQAFQVAYMEFLKAN 168
A+ + + FQ+ Y +
Sbjct: 122 AQAAEPVILDLRDLFQLIYELKQREE 147
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain,
phosphoprotein, signaling protei structural genomics,
structural genomics consortium, SGC; 2.70A {Homo
sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Length = 168
Score = 101 bits (252), Expect = 6e-26
Identities = 28/145 (19%), Positives = 64/145 (44%), Gaps = 20/145 (13%)
Query: 25 LGPGTLFRLKFLGSVQVDEDD-PKCCKRRVKKVMVEEAAPEGETQPSTEVDLFISTEKIM 83
F +++LG V+V+E C+ VKK+ + S + L++S + +
Sbjct: 38 RKGTCSFPVRYLGHVEVEESRGMHVCEDAVKKLK-------AMGRKSVKSVLWVSADGLR 90
Query: 84 VLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFES 143
V++ K++++D + +S+ A +L + ++ ++ T + ICH F +
Sbjct: 91 VVDDKTKDLLVDQTIEKVSFCAPDRNLDKAFS---YICRD-------GTTRRWICHCFLA 140
Query: 144 --DEAQFIAQSIGQAFQVAYMEFLK 166
D + ++ ++G AF +
Sbjct: 141 LKDSGERLSHAVGCAFAACLERKQR 165
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 97.5 bits (243), Expect = 2e-24
Identities = 36/178 (20%), Positives = 72/178 (40%), Gaps = 24/178 (13%)
Query: 206 EVVVPKAKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQIIAVNGVS 263
EVV+ G+ + S + + + +I+ + A RCG L IGD+++A+NG+
Sbjct: 9 EVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIP 68
Query: 264 LVAY-----MEFLKANGIEDHSFVK--EMDYQEVLNSQEIFGDELQMFAKKEL------- 309
+ L+ + I ++ + V+ S F +L EL
Sbjct: 69 TEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSP 128
Query: 310 -QKE------ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
++ I + +G +A R G + +G +++ I+N + + E V +L
Sbjct: 129 SSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDL 186
Score = 59.4 bits (144), Expect = 1e-10
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 193 DELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNI 252
D + V +PK LG+ I +VI+++ A R G L +
Sbjct: 97 DVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLEL 156
Query: 253 GDQIIAVNGVSL 264
GD+++A++ + L
Sbjct: 157 GDKLLAIDNIRL 168
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 96.4 bits (240), Expect = 3e-24
Identities = 33/161 (20%), Positives = 70/161 (43%), Gaps = 15/161 (9%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+EV++ K + +G+ + G + + + A+ G L GDQ++ +NG +
Sbjct: 6 REVILCKDQDGKIGLRLKSIDNG-----IFVQLVQANSPASLVG-LRFGDQVLQINGENC 59
Query: 265 VAY-----MEFLKANGIEDHSF-VKEMDYQEVLNSQEIFGDELQMFAKKELQKEICSLLR 318
+ + LK E + +++ ++ + + D +I S+++
Sbjct: 60 AGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHK---DSTGHVGFIFKNGKITSIVK 116
Query: 319 GGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
A R G+ H I EIN Q+V+ + +I ++L+TS
Sbjct: 117 DSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTV 157
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 96.0 bits (239), Expect = 1e-23
Identities = 35/179 (19%), Positives = 73/179 (40%), Gaps = 21/179 (11%)
Query: 202 ELQKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 258
++ E + + LG I ++ P++ I + P GAAA+ G+L + D I+
Sbjct: 3 SMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 62
Query: 259 VNGVSLVAY-----MEFLKANG-------IEDHSFVKEMDYQEVLNSQEIFGDELQMFAK 306
VN V + +E LK G + +++ +++ + G +
Sbjct: 63 VNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVG 122
Query: 307 KELQKE-----ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
+ + ++ GG A + G +++G +I+ +N+ + V HE V L +
Sbjct: 123 NQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDV 181
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 95.3 bits (237), Expect = 2e-23
Identities = 27/173 (15%), Positives = 60/173 (34%), Gaps = 25/173 (14%)
Query: 206 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
+ + + + +GV++ + VI ++ P G A +L I D I +NG +
Sbjct: 21 LIELKV-EKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIH 79
Query: 266 AYMEFLKANGIEDHSFVKEMDYQEVLNSQEIFGDELQMFAKK-ELQKE------------ 312
+ + Y++ + D ++ +L K+
Sbjct: 80 V-----GSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPN 134
Query: 313 -----ICSLLRGGIAERGG-VRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I L++G E ++ G I + N ++ +P + L + G+
Sbjct: 135 EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGK 187
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal
reces hypercholesterolemia, ARH, cholesterol; 1.37A
{Rattus norvegicus}
Length = 137
Score = 92.2 bits (229), Expect = 5e-23
Identities = 31/148 (20%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 28 GTLFRLKFLGSVQVDEDD-PKCCKRRVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLN 86
G +F LK+LG V+ + VK+++ A + + +V L +S I++ +
Sbjct: 3 GMVFSLKYLGMTLVERPKGEELSAAAVKRIV---ATAKASGKKLQKVTLKVSPRGIILTD 59
Query: 87 TDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESD-- 144
+ +++ + ++ ISY + A +++Q + + CH F
Sbjct: 60 SLTSQLIENVSIYRISYCTADKMHDKVFA---YIAQS-------QQNESLECHAFLCTKR 109
Query: 145 -EAQFIAQSIGQAFQVAYMEFLKANGIE 171
AQ + ++ QAF+VA+ EF + + +
Sbjct: 110 KVAQAVTLTVAQAFKVAF-EFWQVSLVP 136
>1n3h_A SHC transforming protein; free protein, beta sandwich, signaling
protein; NMR {Homo sapiens} SCOP: b.55.1.2 PDB: 1oy2_A
2l1c_A* 1shc_A*
Length = 207
Score = 93.7 bits (232), Expect = 8e-23
Identities = 32/179 (17%), Positives = 70/179 (39%), Gaps = 48/179 (26%)
Query: 22 DTGLGPGTLFRLKFLGSVQVDEDDP----------------KCC------------KRRV 53
D +GPG + ++++G V+V + C ++
Sbjct: 43 DKVMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPC 102
Query: 54 KKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIA----DIGD 109
+ + + L +ST + ++ D K+I+ +H +++IS+ + D +
Sbjct: 103 SRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAE 162
Query: 110 LVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE--AQFIAQSIGQAFQVAYMEFLK 166
V +A+ + CH+ E E AQ + +IGQAF++ + ++L+
Sbjct: 163 YVAYVAK--------------DPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLR 207
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S
disease, APP, AICD, Fe65, PTB domain, alternative
splicing, polymorphism, alzheimer disease, apoptosis;
2.00A {Homo sapiens} PDB: 3dxd_A 3dxc_A
Length = 140
Score = 91.5 bits (227), Expect = 1e-22
Identities = 23/148 (15%), Positives = 57/148 (38%), Gaps = 23/148 (15%)
Query: 31 FRLKFLGSVQVDEDDPK---CCKRRVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNT 87
F++ +LG+V V + P ++ V+ + T + ++ + +L+
Sbjct: 10 FQVYYLGNVPVAK--PVGVDVINGALESVL-----SSSSREQWTPSHVSVAPATLTILHQ 62
Query: 88 DLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE-A 146
+ ++ + +R +S++A D+ F+ CH+F + A
Sbjct: 63 QTEAVLGECRVRFLSFLAVGRDVHTFA----FIMAAGPA--------SFCCHMFWCEPNA 110
Query: 147 QFIAQSIGQAFQVAYMEFLKANGIEDHS 174
+++++ A + Y + L A H
Sbjct: 111 ASLSEAVQAACMLRYQKCLDARSQHHHH 138
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 91.3 bits (227), Expect = 5e-22
Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 27/180 (15%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
V + K +G LG+ + G ++NL G AAR QL++GD I AVNG++L
Sbjct: 9 TVVELMKKEGTTLGLTVS--GGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINL 66
Query: 265 VAY-----MEFLKANG---------------IEDHSFVKEMDYQEVLNSQEIFGDELQMF 304
+ + LK G I+ S + + FG ++
Sbjct: 67 AKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNTFGFVIRGG 126
Query: 305 AKKELQKE----ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
A + K I + GG A+R G ++ G R++ ++ ++ H + +++L E
Sbjct: 127 AHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE 186
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 87.5 bits (217), Expect = 1e-21
Identities = 37/61 (60%), Positives = 46/61 (75%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+EV + K +GE LGV +VESGWGS+LPT VIANL G A R G L+IGD++ A+NG SL
Sbjct: 11 REVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSL 70
Query: 265 V 265
V
Sbjct: 71 V 71
Score = 48.2 bits (115), Expect = 1e-07
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I +LL GG AER G + +G R+ IN S+V +P + + +
Sbjct: 41 IANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQ 88
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 68.5 bits (168), Expect = 6e-15
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 312 EICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
+I S+++ A R G+ H I EIN Q+V+ + +I ++L+TS
Sbjct: 26 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTV 73
Score = 40.4 bits (95), Expect = 4e-05
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ + + K +G + I ++ +AAR G L I +NG ++
Sbjct: 6 RTITMHKDSTGHVGFIFKNG---------KITSIVKDSSAARNG-LLTEHNICEINGQNV 55
Query: 265 VA 266
+
Sbjct: 56 IG 57
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 65.9 bits (161), Expect = 5e-14
Identities = 39/47 (82%), Positives = 44/47 (93%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
ICSL+RGGIAERGGVRVGHRIIEIN QSVVA PHEKIV++L+ +VGE
Sbjct: 35 ICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGE 81
Score = 38.6 bits (90), Expect = 3e-04
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 234 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVA 266
+I +L G A R G + +G +II +NG S+VA
Sbjct: 34 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVA 65
>2dyq_A Amyloid beta A4 precursor protein-binding family 3;
phosphotyrosine-interaction domain (PTB/PID alzheimer'S
disease, structural genomics, NPPSFA; 3.10A {Homo
sapiens}
Length = 144
Score = 67.3 bits (164), Expect = 7e-14
Identities = 19/162 (11%), Positives = 48/162 (29%), Gaps = 22/162 (13%)
Query: 10 GCTQALPEDPVVDTGLGPGTLFRLKFLGSVQVDEDDPK---CCKRRVKKVMVEEAAPEGE 66
G + + D V + ++G++ V + + +
Sbjct: 1 GSSGSSGLDAVSQ----AAQKYEALYMGTLPVTK--AMGMDVLNEAIGTLTARGDRNAWV 54
Query: 67 TQPSTEVDLFISTEKIMVLNTDLKEIMMDHALRTISYIADIGDLVVLMARRRFVSQEADE 126
+ D ++ I + +E + +R +++I D ++ +
Sbjct: 55 PTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFG----LIADLGRQ 110
Query: 127 PPKISRTPKMICHVFESDE-AQFIAQSIGQAFQVAYMEFLKA 167
C F A +++++ A V Y + L A
Sbjct: 111 --------SFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVA 144
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 71.1 bits (173), Expect = 1e-13
Identities = 34/179 (18%), Positives = 72/179 (40%), Gaps = 21/179 (11%)
Query: 202 ELQKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 258
E++ E + + LG I ++ P++ I + P GAAA+ G+L + D I+
Sbjct: 57 EMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILF 116
Query: 259 VNGVSL------VAYMEFLKANG------IEDHSFVKEMDYQEVLNSQEIFGDELQMFAK 306
VN V + A +A + +++ +++ + G +
Sbjct: 117 VNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVG 176
Query: 307 KELQKE-----ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
+ + ++ GG A + G +++G +I+ +N+ + V HE V L +
Sbjct: 177 NQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDV 235
Score = 45.7 bits (107), Expect = 2e-05
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ +V+ + LG IV G + I+ + G A G+L GDQI++VNGV L
Sbjct: 309 RRIVIHR-GSTGLGFNIV---GGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 364
Score = 43.0 bits (100), Expect = 1e-04
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I +L GG A+ G +R G +I+ +N + HE+ L +
Sbjct: 335 ISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQT 382
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 65.9 bits (161), Expect = 1e-13
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
K+V + + K E + +E G S + VV++ + GAA R G + GD+I+A+NG +
Sbjct: 17 KDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIV 76
Query: 265 V 265
Sbjct: 77 T 77
Score = 42.8 bits (101), Expect = 1e-05
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ ++ GG AER GGV G I+ IN + V + L
Sbjct: 47 VSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAAL 88
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 64.7 bits (158), Expect = 2e-13
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ + K E +G+ + + S +A + G R G L++GD+I+ +NG ++
Sbjct: 14 RLIQFEKVTEEPMGICLKLNEKQS----CTVARILHGGMIHRQGSLHVGDEILEINGTNV 69
Query: 265 V 265
Sbjct: 70 T 70
Score = 47.7 bits (114), Expect = 2e-07
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
+ +L GG+ R G + VG I+EIN +V +++ + + G
Sbjct: 40 VARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGM 87
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 62.8 bits (153), Expect = 2e-12
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 206 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
V + K G LG+ + + + I + PA R G L+ GD I++++G S+
Sbjct: 18 MVEIVKTPGSALGISLT-TTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSM 75
Score = 47.4 bits (113), Expect = 4e-07
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I + + +R G + G I+ I+ S+ + LLA+ +
Sbjct: 46 IDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEK 93
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 60.8 bits (148), Expect = 3e-12
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ V K E +G+ + + ++A + G R G L++GD+I +NG+S+
Sbjct: 3 RLVQFQKNTDEPMGITLKMNELNH----CIVARIMHGGMIHRQGTLHVGDEIREINGISV 58
Query: 265 V 265
Sbjct: 59 A 59
Score = 42.3 bits (100), Expect = 1e-05
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
+ ++ GG+ R G + VG I EIN SV E++ +L G
Sbjct: 29 VARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGS 76
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 61.7 bits (150), Expect = 4e-12
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 205 KEVVVPKAKGEILGVVIV------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 258
+VV+ + + E G VI+ ESG +P I + A RC +L +GD+I+A
Sbjct: 12 SDVVIHRKENEGFGFVIISSLNRPESGSTITVP-HKIGRIIDGSPADRCAKLKVGDRILA 70
Query: 259 VNGVSLV 265
VNG S++
Sbjct: 71 VNGQSII 77
Score = 47.8 bits (114), Expect = 2e-07
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I ++ G A+R ++VG RI+ +N QS++ +PH IV L+
Sbjct: 47 IGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLI 88
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 61.3 bits (149), Expect = 5e-12
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 179 MDYQEVLNSQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANL 238
M + +S G E F + + +V + K ++G+ I G P + I +
Sbjct: 1 MHHHHHHSSGVDLGTENLYF-QSMVPGKVTLQKDAQNLIGISIG--GGAQYCPCLYIVQV 57
Query: 239 APAGAAARCGQLNIGDQIIAVNGVSL 264
AA G + GD+I VNG S+
Sbjct: 58 FDNTPAALDGTVAAGDEITGVNGRSI 83
Score = 41.7 bits (98), Expect = 3e-05
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I + A G V G I +N +S+ ++ ++ GE
Sbjct: 54 IVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 101
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 60.9 bits (148), Expect = 6e-12
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
K V + KA+ LG + +V+I+ + GAA + G L+ GD+++ +NG+ +
Sbjct: 27 KIVRIEKARDIPLGATVRNEM-----DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEI 81
Score = 49.0 bits (117), Expect = 1e-07
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I +++GG AE+ G + G ++EIN + ++ +LL+ G
Sbjct: 52 ISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGT 99
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 59.3 bits (144), Expect = 2e-11
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 206 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
V + K G+ LG+ + + G IA+L +L GD I NG +L
Sbjct: 5 NVDLMKKAGKELGLSLSPNEIG-----CTIADLIQGQYPEIDSKLQRGDIITKFNGDALE 59
Score = 44.3 bits (105), Expect = 4e-06
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I L++G E ++ G I + N ++ +P + L + G+
Sbjct: 29 IADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGK 76
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 58.5 bits (142), Expect = 3e-11
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 206 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
V + K G+ LG+ + + G IA+L +L GD I NG +L
Sbjct: 11 NVDLMKKAGKELGLSLSPNEIG-----CTIADLIQGQYPEIDSKLQRGDIITKFNGDALE 65
Score = 44.6 bits (106), Expect = 2e-06
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I L++G E ++ G I + N ++ +P + L + G+
Sbjct: 35 IADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGK 82
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 59.4 bits (144), Expect = 4e-11
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 206 EVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 262
V + + G+ LG+ IV + + + ++ P AA G + + D+I+AV+GV
Sbjct: 18 NVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGV 77
Query: 263 SLV 265
++
Sbjct: 78 NIQ 80
Score = 43.2 bits (102), Expect = 2e-05
Identities = 8/42 (19%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ S++ G A G ++V +I+ ++ ++ + +V +L
Sbjct: 50 VKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVL 91
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 58.6 bits (142), Expect = 4e-11
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
++V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 29 RKVLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 86
Score = 44.0 bits (104), Expect = 5e-06
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I + G A+R GG+ VG I+ +N ++ H++ V +L+ GE
Sbjct: 57 ISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGE 104
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 58.6 bits (142), Expect = 4e-11
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 179 MDYQEVLNSQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVI 235
M + +S G E F +K V + K GE LG+ + + + +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMH-EKVVNIQKDPGESLGMTVAGGASHREWDL--PIYV 57
Query: 236 ANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
++ P G +R G++ GD ++ V+GV L
Sbjct: 58 ISVEPGGVISRDGRIKTGDILLNVDGVELT 87
Score = 41.6 bits (98), Expect = 4e-05
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ S+ GG+ R G ++ G ++ ++ + V + V LL
Sbjct: 57 VISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALL 98
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 58.1 bits (141), Expect = 5e-11
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 206 EVVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 261
V + K + G+ IV + + + I + P A CG+L +GD+I+++NG
Sbjct: 8 MVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNG 67
Query: 262 VSLV 265
+
Sbjct: 68 KDVR 71
Score = 43.8 bits (104), Expect = 4e-06
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I ++ A G ++VG RI+ +N + V + +++L+
Sbjct: 41 IKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLI 82
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 57.5 bits (139), Expect = 5e-11
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ V + K GE LGV G +VIA + G A+ G L++GD I VNG +
Sbjct: 8 RMVGIRKTAGEHLGVTFRVEG-----GELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV 62
Score = 33.2 bits (76), Expect = 0.024
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I +L GG+ + G + VG I E+N Q V + LL + G
Sbjct: 33 IARILHGGMVAQQGLLHVGDIIKEVNGQP-VGSDPRALQELLRNASGS 79
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 58.2 bits (141), Expect = 5e-11
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 199 AKKELQKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQ 255
A+ ++ ++ G LG+ IV E S IA + P G+A + G+L G Q
Sbjct: 14 ARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQ 73
Query: 256 IIAVNGVSL 264
++ NG+ L
Sbjct: 74 VLEWNGIPL 82
Score = 43.2 bits (102), Expect = 1e-05
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I +L GG AE+ G + G +++E N + + +E++ ++++ GE
Sbjct: 53 IAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGE 100
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 57.5 bits (139), Expect = 1e-10
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 206 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
V + K K LG ++ E P V+I++L GAA + G + GD I+AVN L
Sbjct: 4 SVRLFKRKVGGLGFLVKE---RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPL 59
Score = 44.0 bits (104), Expect = 4e-06
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I L+RGG AE+ G ++ G I+ +N++ +V + ++ + +L E
Sbjct: 30 ISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE 77
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 57.0 bits (138), Expect = 1e-10
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 204 QKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 263
+V K LG+ I G + P I + G+A CGQL +G I+ VNG++
Sbjct: 6 SGTLVRVKKSAATLGIAIE-GGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLT 64
Query: 264 L 264
L
Sbjct: 65 L 65
Score = 42.0 bits (99), Expect = 2e-05
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
I ++ RGG A G ++VGH I+E+N ++ H + ++A +
Sbjct: 36 IVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEA 80
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 57.4 bits (139), Expect = 1e-10
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 205 KEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 261
+ V + K + LG+ I S G + + IA + P G AA+ +L +GD+I+ + G
Sbjct: 26 RTVEMKKGPTDSLGISIAGGVGSPLGDV--PIFIAMMHPTGVAAQTQKLRVGDRIVTICG 83
Query: 262 VSLV 265
S
Sbjct: 84 TSTE 87
Score = 42.4 bits (100), Expect = 3e-05
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I + G+A + +RVG RI+ I S + H + VNLL
Sbjct: 57 IAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLL 98
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 56.6 bits (137), Expect = 1e-10
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
++V++ K E LG+ I G +P ++I+ + P A RCG L++GD I+AVNGV+L
Sbjct: 11 RKVLLLKEDHEGLGISIT-GGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNL 68
Score = 43.1 bits (102), Expect = 8e-06
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I + G A+R GG+ VG I+ +N ++ H++ V +L+ GE
Sbjct: 39 ISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGE 86
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 57.1 bits (138), Expect = 2e-10
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 205 KEVVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 257
+ V + + + LG+ IV G ++ + I ++ A + G L GD+I+
Sbjct: 26 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIV 85
Query: 258 AVNGVSLV 265
V+G+ L
Sbjct: 86 EVDGMDLR 93
Score = 41.3 bits (97), Expect = 5e-05
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I +L A + G ++ G RI+E++ + HE+ V + +
Sbjct: 63 IKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNP 110
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 56.6 bits (137), Expect = 2e-10
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 205 KEVVVPKAKGEILGVVIV---ESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQII 257
+E+ + KA GE LG+ I G+ + I+ ++P GAA R G+L +G +++
Sbjct: 11 RELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLL 70
Query: 258 AVNGVSLV 265
VN SL+
Sbjct: 71 EVNQQSLL 78
Score = 41.6 bits (98), Expect = 3e-05
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I + G A R G +RVG R++E+N QS++ + H + V LL
Sbjct: 48 ISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLL 89
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 55.8 bits (135), Expect = 2e-10
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 204 QKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 263
++ V V KA LG+ I G + +P ++I+ + AA + L +GD I++VNG
Sbjct: 5 RRRVTVRKADAGGLGISIK-GGRENKMP-ILISKIFKGLAADQTEALFVGDAILSVNGED 62
Query: 264 L 264
L
Sbjct: 63 L 63
Score = 41.9 bits (99), Expect = 2e-05
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I + +G A++ + VG I+ +N + + + H++ V L + E
Sbjct: 34 ISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKE 81
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 55.8 bits (135), Expect = 3e-10
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 204 QKEVVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQI 256
+ V + + + LG+ IV G ++ + I ++ A + G L GD+I
Sbjct: 5 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 64
Query: 257 IAVNGVSLV 265
+ V+G+ L
Sbjct: 65 VEVDGMDLR 73
Score = 41.2 bits (97), Expect = 4e-05
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I +L A + G ++ G RI+E++ + HE+ V + +
Sbjct: 43 IKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNP 90
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 56.4 bits (136), Expect = 3e-10
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 206 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
V + K K LG ++ E P V+I++L GAA + G + GD I+AVN L
Sbjct: 11 SVRLFKRKVGGLGFLVKE---RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPL 66
Score = 41.8 bits (98), Expect = 4e-05
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I L+RGG AE+ G ++ G I+ +N++ +V + ++ + +L E
Sbjct: 37 ISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE 84
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 58.6 bits (141), Expect = 5e-10
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 204 QKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 263
++ V V KA LG+ I G + +P ++I+ + AA + L +GD I++VNG
Sbjct: 78 RRRVTVRKADAGGLGISIK-GGRENKMP-ILISKIFKGLAADQTEALFVGDAILSVNGED 135
Query: 264 L 264
L
Sbjct: 136 L 136
Score = 45.5 bits (107), Expect = 9e-06
Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
I + +G A++ + VG I+ +N + + + H++ V L +
Sbjct: 107 ISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT 151
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 55.5 bits (134), Expect = 6e-10
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 200 KKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 259
+ + ++ K +G LG + G + + + P G A++ G + G++++++
Sbjct: 12 QLDGIHVTILHKEEGAGLGFSLA-GGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSI 70
Query: 260 NGVSL 264
NG SL
Sbjct: 71 NGKSL 75
Score = 39.4 bits (92), Expect = 3e-04
Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ + G+A + G ++ G+ ++ IN +S+ H + +L
Sbjct: 46 VHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAIL 87
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 55.2 bits (133), Expect = 7e-10
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 204 QKEVVVPKAKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQIIAVNG 261
EVV+ G+ + S + + + +I+ + A RCG L IGD+++A+NG
Sbjct: 16 TTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING 75
Query: 262 VSL 264
+
Sbjct: 76 IPT 78
Score = 46.0 bits (109), Expect = 1e-06
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
I + AER G +++G R++ IN E+ LL S
Sbjct: 49 ISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS 93
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 55.2 bits (133), Expect = 7e-10
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 205 KEVVVPKAKGEILGVVIV-------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQII 257
+ V + + LG+ IV G L + I + A + L GD+I+
Sbjct: 17 RIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKIL 76
Query: 258 AVNGVSL 264
V+GV L
Sbjct: 77 EVSGVDL 83
Score = 43.2 bits (102), Expect = 1e-05
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
I +L A + ++ G +I+E++ + H + V + +
Sbjct: 54 IKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNA 98
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 55.2 bits (133), Expect = 8e-10
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 205 KEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 261
K+ VP+ G +LG+ +V + G + I + A G L GD+++ NG
Sbjct: 38 KDGSVPRDSGAMLGLKVVGGKMTESGRL--CAFITKVKKGSLADTVGHLRPGDEVLEWNG 95
Query: 262 VSLV 265
L
Sbjct: 96 RLLQ 99
Score = 42.5 bits (100), Expect = 3e-05
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I + +G +A+ G +R G ++E N + + E++ N++ S E
Sbjct: 69 ITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPE 116
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 54.2 bits (131), Expect = 8e-10
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 203 LQKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 259
++ V +G G VI P VVI ++ P G A R G + GD++++V
Sbjct: 2 MRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRP-VVITSVRPGGPADREGTIKPGDRLLSV 60
Query: 260 NGVSLV 265
+G+ L+
Sbjct: 61 DGIRLL 66
Score = 42.6 bits (101), Expect = 1e-05
Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I S+ GG A+R G ++ G R++ ++ ++ H + +++L
Sbjct: 36 ITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSIL 77
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 54.8 bits (132), Expect = 1e-09
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 202 ELQKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 258
+L E+ + + LGV + G+ L + I ++ GAA + G+L + DQ+IA
Sbjct: 24 QLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLG-IFIKSIIHGGAAFKDGRLRMNDQLIA 82
Query: 259 VNGVSLV 265
VNG +L+
Sbjct: 83 VNGETLL 89
Score = 39.0 bits (91), Expect = 4e-04
Identities = 10/42 (23%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I S++ GG A + G +R+ ++I +N ++++ + + + L
Sbjct: 59 IKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETL 100
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 53.4 bits (129), Expect = 1e-09
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 206 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
+ + K G+ LG+ IV G V ++++ G A G+L GDQI+ VNG +
Sbjct: 7 TIGLQKKPGKGLGLSIV--G-KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVR 63
Score = 41.1 bits (97), Expect = 4e-05
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
+ +++GGIA+ G + G +I+ +N + V E + LL S+G
Sbjct: 33 VSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGT 80
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 54.0 bits (130), Expect = 2e-09
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 187 SQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGA 243
E F +Q A+ + + + + LG +V G + + + ++ P
Sbjct: 9 GNEDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKV--DIFVKDVQPGSV 66
Query: 244 AARCGQLNIGDQIIAVNGVSL 264
A R +L DQI+A+N L
Sbjct: 67 ADRDQRLKENDQILAINHTPL 87
Score = 39.7 bits (93), Expect = 2e-04
Identities = 9/43 (20%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSV-VAVPHEKIVNLL 353
+ + G +A+R ++ +I+ IN+ + + H++ + LL
Sbjct: 58 VKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALL 100
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 52.7 bits (127), Expect = 3e-09
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
V + + G LG+ I G ++I++L G A R G ++IGD+I+A+N SL
Sbjct: 7 YTVELKR-YGGPLGITIS--GTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSL 63
Query: 265 V 265
Sbjct: 64 K 64
Score = 46.5 bits (111), Expect = 5e-07
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I SL +GG+AER G + +G RI+ IN+ S+ P + ++LL +
Sbjct: 34 ISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGET 81
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 53.6 bits (129), Expect = 3e-09
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+V + K ++G+ I G + I + AA G + GD+I VNG S+
Sbjct: 21 GKVTLQKDAQNLIGISIG-GGAQYCPC-LYIVQVFDNTPAALDGTVAAGDEITGVNGRSI 78
Query: 265 V 265
Sbjct: 79 K 79
Score = 40.9 bits (96), Expect = 7e-05
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I + A G V G I +N +S+ ++ ++ GE
Sbjct: 49 IVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 96
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 52.9 bits (127), Expect = 4e-09
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 207 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSL 264
+ + + G + G+ +P V+++ +AP A C +LN GDQ++ +NG +
Sbjct: 21 IRMKPDENGRFGFNVK-GGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDI 77
Score = 43.6 bits (103), Expect = 7e-06
Identities = 7/43 (16%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 313 ICSLLRGGIAER--GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ + G A+ + G +++ IN + + H+++V +
Sbjct: 47 VSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFI 89
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 52.8 bits (127), Expect = 5e-09
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 192 GDELQMFAKKELQ----KEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAA 244
DE K Q + + K LG +V G + + + + A
Sbjct: 5 CDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGEL--GIFVQEIQEGSVA 62
Query: 245 ARCGQLNIGDQIIAVNGVSL 264
R G+L DQI+A+NG +L
Sbjct: 63 HRDGRLKETDQILAINGQAL 82
Score = 36.6 bits (85), Expect = 0.002
Identities = 10/43 (23%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSV-VAVPHEKIVNLL 353
+ + G +A R G ++ +I+ IN Q++ + H++ +++L
Sbjct: 53 VQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISIL 95
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 52.3 bits (126), Expect = 5e-09
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 206 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
+ + K + LG+ IV G ++L ++I + GAA + G+L GDQI+ VNG+ L
Sbjct: 7 TIEISKGRTG-LGLSIV-GGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLR 64
Score = 41.1 bits (97), Expect = 3e-05
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I + G A + G + G +I+E+N + H++ +N+L
Sbjct: 34 IHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVL 75
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 52.4 bits (126), Expect = 5e-09
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 192 GDELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLN 251
G + + V + K LG+ IV + I ++ GA A G++
Sbjct: 1 GSHMNII-------TVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIE 53
Query: 252 IGDQIIAVNGVSLV 265
GD ++ VN ++
Sbjct: 54 PGDMLLQVNDMNFE 67
Score = 38.2 bits (89), Expect = 6e-04
Identities = 9/42 (21%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I S+++GG G + G ++++N+ + + ++ V +L
Sbjct: 37 IGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 52.8 bits (127), Expect = 5e-09
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 205 KEVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 263
+E+++ +KG LG+ IV G + L +VI + GAAAR G+L GDQI+ VNGV
Sbjct: 17 QEMIIEISKGRSGLGLSIV-GGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVD 75
Query: 264 LV 265
L
Sbjct: 76 LR 77
Score = 41.2 bits (97), Expect = 6e-05
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I + G A R G + G +I+E+N + HE+ + L
Sbjct: 47 IHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITAL 88
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 52.4 bits (126), Expect = 6e-09
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 206 EVVVPKAKGEI-LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 261
V + + K LG+ I + + + +L P AAA G++ D+I+ V+
Sbjct: 15 SVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDD 74
Query: 262 VSLV 265
V++
Sbjct: 75 VNVQ 78
Score = 41.6 bits (98), Expect = 4e-05
Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ SL+ G A G + +I+ +++ +V + +V +L
Sbjct: 48 VKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVL 89
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 51.8 bits (125), Expect = 6e-09
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 206 EVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 262
EV + K LG+ + + + + + P GAA G+++ GD+++AVNGV
Sbjct: 8 EVELAKNDNS-LGISVTGGVNTSVRHG--GIYVKAVIPQGAAESDGRIHKGDRVLAVNGV 64
Query: 263 SLV 265
SL
Sbjct: 65 SLE 67
Score = 41.4 bits (98), Expect = 3e-05
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ +++ G AE G + G R++ +N S+ H++ V L
Sbjct: 37 VKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL 78
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 51.9 bits (125), Expect = 6e-09
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 206 EVVVPK-AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+V + K GE LG+ +V + P V I +L G AA+ G+L+ D+++A+NG L
Sbjct: 6 QVALHKRDSGEQLGIKLVR---RTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDL 62
Query: 265 V 265
Sbjct: 63 K 63
Score = 42.3 bits (100), Expect = 1e-05
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I LL GG+A + G + R++ IN + E ++ S
Sbjct: 33 ILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGER 80
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 51.6 bits (124), Expect = 7e-09
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+ ++ G + GG++ R++++N+ +V L+A S
Sbjct: 36 VKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAES 79
Score = 44.3 bits (105), Expect = 3e-06
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 202 ELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 261
EL K + + E G + + G + V + N+ PAG G L D+++ VN
Sbjct: 6 ELHKVTLYKDSGMEDFGFSVAD---GLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNH 61
Query: 262 VSL 264
V
Sbjct: 62 VRT 64
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 52.0 bits (125), Expect = 7e-09
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 207 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
V+ K LG+ I+ + P V I + P G + G+L GDQ++++N S++
Sbjct: 17 RVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMI 75
Score = 39.7 bits (93), Expect = 2e-04
Identities = 10/42 (23%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I ++ GG + G ++ G +++ IN +S++ V E+ +++
Sbjct: 45 IHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSII 86
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 51.5 bits (124), Expect = 8e-09
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
I + G AE+ G+ G R++E+N ++V H+++V+ + +
Sbjct: 31 IRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA 74
Score = 38.0 bits (89), Expect = 4e-04
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
I + P A + G L GD+++ VNG ++
Sbjct: 27 LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENV 59
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 51.7 bits (124), Expect = 9e-09
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
IC + A G++ G + IN S ++++V+L+ +S
Sbjct: 52 ICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSS 95
Score = 39.4 bits (92), Expect = 2e-04
Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 205 KEVVVPKAKGEILGVVIV-----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 259
K V V K E G I S +I + A G L GD + +
Sbjct: 17 KLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANI 75
Query: 260 NGVSL 264
NGVS
Sbjct: 76 NGVST 80
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 52.1 bits (125), Expect = 1e-08
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 217 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
LG+ + ++ + + P G AA G++ IGD+++ +N L
Sbjct: 38 LGLSLA-GNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILY 85
Score = 40.9 bits (96), Expect = 8e-05
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ + G A G +R+G ++EINNQ + H+ ++
Sbjct: 55 VVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAII 96
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 51.1 bits (123), Expect = 1e-08
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
+ + L G A RCG+L +GD ++ +NG S
Sbjct: 40 LAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQ 72
Score = 43.4 bits (103), Expect = 7e-06
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ LL+ G A+R G + VG ++ IN +S + H + V +
Sbjct: 42 VRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERI 83
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 51.2 bits (123), Expect = 1e-08
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 206 EVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 262
V + + LG+ ++ + G+ P + I L P AA G+L++GD+I+ VNG
Sbjct: 11 TVELERGPSG-LGMGLIDGMHTHLGA--PGLYIQTLLPGSPAAADGRLSLGDRILEVNGS 67
Query: 263 SLV 265
SL+
Sbjct: 68 SLL 70
Score = 42.3 bits (100), Expect = 2e-05
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I +LL G A G + +G RI+E+N S++ + + + V+L+
Sbjct: 40 IQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLI 81
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 51.7 bits (124), Expect = 1e-08
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 210 PKAKGEILGVVIV--ESGWG-------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 260
+ KG+ + + G+G + I +L G AA G++ GD I++VN
Sbjct: 13 SELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVN 72
Query: 261 GVSL 264
+
Sbjct: 73 DTCV 76
Score = 42.5 bits (100), Expect = 3e-05
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I SL+ G A G + G I+ +N+ V+ H ++V +
Sbjct: 47 IKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIF 88
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 50.7 bits (122), Expect = 1e-08
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+++ + + K G I+ G P + I ++ P GAA G+L GD++I+V+G +
Sbjct: 4 QDIFLWR-KETGFGFRIL-GGNEPGEP-IYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60
Query: 265 V 265
+
Sbjct: 61 I 61
Score = 39.9 bits (94), Expect = 8e-05
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I ++ G A+ G +R G +I ++ V+ H+ +V L+
Sbjct: 31 IGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLM 72
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 50.5 bits (121), Expect = 2e-08
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
KEV V K + LG+ I ++G G I + G + +GD I ++NG ++
Sbjct: 7 KEVNVYK-SEDSLGLTITDNGVGY----AFIKRIKDGGVIDSVKTICVGDHIESINGENI 61
Query: 265 V 265
V
Sbjct: 62 V 62
Score = 41.3 bits (97), Expect = 4e-05
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I + GG+ + + VG I IN +++V H + L
Sbjct: 32 IKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKL 73
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 50.5 bits (121), Expect = 2e-08
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+ + A+ G+ G I +N +V + H +IV+++ S
Sbjct: 41 VARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKAS 84
Score = 38.9 bits (91), Expect = 3e-04
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 205 KEVVVPKAKGEILGVVIVESG-----WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 259
K + + K + G I G + +A + + A G L GD I +V
Sbjct: 6 KVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASV 64
Query: 260 NGVSLV 265
NG+++
Sbjct: 65 NGLNVE 70
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 50.8 bits (122), Expect = 2e-08
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 206 EVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
+V + + + G I+ G P ++I + G+A R G+L+ GD+++ V+G+ +
Sbjct: 12 DVHLRRMESG-FGFRIL-GGDEPGQP-ILIGAVIAMGSADRDGRLHPGDELVYVDGIPVA 68
Score = 41.5 bits (98), Expect = 3e-05
Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I +++ G A+R G + G ++ ++ V H +++L+
Sbjct: 38 IGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLM 79
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 50.8 bits (122), Expect = 2e-08
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 207 VVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 263
+ V K +G+ IV +G + + + ++ GAA G+L GDQ+++V+G S
Sbjct: 13 ITVTLKKQNGMGLSIVAAKGAGQDKL--GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRS 70
Query: 264 LV 265
LV
Sbjct: 71 LV 72
Score = 40.0 bits (94), Expect = 1e-04
Identities = 10/42 (23%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ S+++GG A+ G + G +++ ++ +S+V + E+ L+
Sbjct: 42 VKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM 83
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 50.8 bits (122), Expect = 2e-08
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 217 LGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
LG+ I+ G G+ + + + GAA R G++ + DQI+ V+G+SLV
Sbjct: 22 LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLV 74
Score = 41.2 bits (97), Expect = 5e-05
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ ++ GG A+R G ++V +I+E++ S+V V +L
Sbjct: 44 VKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVL 85
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 50.8 bits (122), Expect = 2e-08
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 179 MDYQEVLNSQEIFGDELQMFAKKELQKEVVVPK-AKGEILGVVIV---ESGWGSMLPTVV 234
M + +S G E F K + + + G LG IV S G + +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMPQCKSITLERGPDG--LGFSIVGGYGSPHGDL--PIY 56
Query: 235 IANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
+ + GAA+ G+L GDQIIAVNG SL
Sbjct: 57 VKTVFAKGAASEDGRLKRGDQIIAVNGQSLE 87
Score = 41.2 bits (97), Expect = 5e-05
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ ++ G A G ++ G +II +N QS+ V HE+ V +L
Sbjct: 57 VKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAIL 98
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 50.4 bits (121), Expect = 2e-08
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I S+ G A R G+R R+IE+N Q+V + H ++V +
Sbjct: 32 IRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASI 72
Score = 39.6 bits (93), Expect = 1e-04
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
P I ++ P AAR G L D++I VNG ++
Sbjct: 28 PGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNV 60
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 50.4 bits (121), Expect = 2e-08
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
I + G AE G++ ++ +N +SV A+ H+ +V ++
Sbjct: 33 IKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKG 76
Score = 37.3 bits (87), Expect = 9e-04
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+I ++ P A G L D ++AVNG S+
Sbjct: 31 QIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSV 61
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 50.4 bits (121), Expect = 2e-08
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 206 EVVVPK-AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
V + K AKG G I G + + + LA G A R G++ +GDQII +NG S
Sbjct: 14 TVDMEKGAKG--FGFSIR-GGREYKMD-LYVLRLAEDGPAIRNGRMRVGDQIIEINGEST 69
Query: 265 V 265
Sbjct: 70 R 70
Score = 43.1 bits (102), Expect = 9e-06
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ L G A R G +RVG +IIEIN +S + H + + L+
Sbjct: 40 VLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELI 81
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 50.3 bits (121), Expect = 2e-08
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
+ + ++ + A G++ IGDQIIAV+G +L
Sbjct: 35 IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQ 67
Score = 42.3 bits (100), Expect = 2e-05
Identities = 8/42 (19%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ S+ + E G +++G +II ++ ++ +++ V +L
Sbjct: 37 VKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVL 78
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 50.4 bits (121), Expect = 3e-08
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 204 QKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 260
+E+V+ + LG I ++ P + I + P GAAA G+L + D ++ VN
Sbjct: 5 YEEIVLERGNSG-LGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVN 63
Query: 261 GVSLV 265
V +
Sbjct: 64 EVDVS 68
Score = 39.2 bits (92), Expect = 2e-04
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I ++ GG A G + V ++ +N V V H + V L
Sbjct: 38 ITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEAL 79
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 50.5 bits (121), Expect = 3e-08
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 206 EVVVPKAKGEILGVVIV------ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 259
+V+ + G LG I+ ++ GS + ++ + +G AA+ G L I D+II V
Sbjct: 11 TLVLHRDSGS-LGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEV 69
Query: 260 NGVSL 264
NG L
Sbjct: 70 NGRDL 74
Score = 40.5 bits (95), Expect = 8e-05
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ ++ G A + GG+++ RIIE+N + + H++ V
Sbjct: 45 VSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAF 86
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 50.0 bits (120), Expect = 3e-08
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
I + +GG A+ G+ IIE+N +V+ P+EK+V+ + +S
Sbjct: 31 IKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSS 74
Score = 38.4 bits (90), Expect = 3e-04
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
P I + G A G L D II VNGV++
Sbjct: 27 PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNV 59
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 50.6 bits (121), Expect = 3e-08
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 217 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
LG+V++++G P + I++L GAAA G L GD +I+V +++
Sbjct: 40 LGLVVIQNG-----PYLQISHLINKGAAASDGILQPGDVLISVGHANVL 83
Score = 45.2 bits (107), Expect = 3e-06
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I L+ G A G ++ G +I + + +V+ + + LL
Sbjct: 53 ISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLL 94
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 50.7 bits (121), Expect = 3e-08
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+ + GG A G+ G RII++N +SV+ + +++ L+ S
Sbjct: 65 VKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNS 108
Score = 39.1 bits (91), Expect = 3e-04
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 191 FGDELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQL 250
FG L+ F + + E + + T+ + + G A G L
Sbjct: 21 FGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-L 79
Query: 251 NIGDQIIAVNGVSL 264
GD+II VNG S+
Sbjct: 80 CTGDRIIKVNGESV 93
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 50.1 bits (120), Expect = 3e-08
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+ + G+A R GV +IE+N ++V HE++V + S
Sbjct: 36 MTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKS 79
Score = 39.7 bits (93), Expect = 2e-04
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
V + ++ P G A R G + D +I VNG ++
Sbjct: 34 VYMTDITPQGVAMRAG-VLADDHLIEVNGENV 64
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 50.5 bits (121), Expect = 3e-08
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 204 QKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 260
++E+ + + LG IV + + S + ++ + GAAA G+L GD+I++VN
Sbjct: 18 EEEINLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVN 76
Query: 261 GVSLV 265
G L
Sbjct: 77 GQDLK 81
Score = 42.4 bits (100), Expect = 2e-05
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ + G A G ++ G +I+ +N Q + + H+ V+L
Sbjct: 51 VSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLF 92
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 49.7 bits (119), Expect = 3e-08
Identities = 8/41 (19%), Positives = 22/41 (53%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ ++ GG AER G++ ++++N + V ++ + +
Sbjct: 40 VQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEI 80
Score = 37.8 bits (88), Expect = 7e-04
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAY-----MEFLKANG 275
V + + G A R G L D ++ +N + + +++
Sbjct: 38 VRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCP 84
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 50.3 bits (120), Expect = 3e-08
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 207 VVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARC-GQLNIGDQIIAVNGVSL 264
+ + + G + G+ +P V+++ +AP A C +LN GDQ++ +NG +
Sbjct: 19 IRMKPDENGRFGFNVK-GGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDI 75
Score = 43.3 bits (102), Expect = 1e-05
Identities = 8/46 (17%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 313 ICSLLRGGIAER--GGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+ + G A+ + G +++ IN + + H+++V + S
Sbjct: 45 VSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS 90
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 49.5 bits (119), Expect = 4e-08
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 217 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
LG I+ G P + I+ + P G A R G L GDQ+++VNGVS+
Sbjct: 18 LGFNIM-GGKEQNSP-IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 63
Score = 42.6 bits (101), Expect = 1e-05
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I ++ GG+A+R GG++ G +++ +N SV HEK V LL + G
Sbjct: 34 ISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGS 81
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 50.1 bits (120), Expect = 4e-08
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
+ + LA G A R G++ IGD+I+ +NG +
Sbjct: 51 LYVLRLAEDGPAERSGKMRIGDEILEINGETTK 83
Score = 43.9 bits (104), Expect = 6e-06
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ L G AER G +R+G I+EIN ++ + H + + L+
Sbjct: 53 VLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELI 94
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 50.0 bits (120), Expect = 4e-08
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 206 EVVVPKAKGEILGVVIVESGWGSMLPT------VVIANLAPAGAAARCGQLNIGDQIIAV 259
EV + K LG+ + + T + + + P GAA G+++ GD+++AV
Sbjct: 12 EVELAKNDNS-LGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 70
Query: 260 NGVSLV 265
NGVSL
Sbjct: 71 NGVSLE 76
Score = 40.4 bits (95), Expect = 7e-05
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ +++ G AE G + G R++ +N S+ H++ V L
Sbjct: 46 VKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL 87
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 50.6 bits (121), Expect = 4e-08
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 206 EVVVPK-AKGEILGVVIVESGWGSMLPT--VVIANLAPAGAAARCGQLNIGDQIIAVNGV 262
V + K + G LG + G GS+ + I + A+ + + GD+I+ + G
Sbjct: 32 TVTLEKMSAG--LGFSLE-GGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGT 88
Query: 263 SL 264
++
Sbjct: 89 AM 90
Score = 42.1 bits (99), Expect = 4e-05
Identities = 7/42 (16%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I + +G +E+ V+ G I+++ ++ + + N++
Sbjct: 61 INRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNII 102
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 50.0 bits (120), Expect = 4e-08
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
+ ++ +A GAA R G L +GD+++++NGV +
Sbjct: 40 IFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVT 72
Score = 41.9 bits (99), Expect = 3e-05
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ + GG A R G ++VG R++ IN V H+ V+LL
Sbjct: 42 VSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLL 83
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 49.7 bits (119), Expect = 4e-08
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+ S+ G A+ G+R G I IN +SV+ + H +V LL S
Sbjct: 38 VWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKS 81
Score = 36.6 bits (85), Expect = 0.001
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 203 LQKEVVVPKAKG----EILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 258
++ +V+ + + + + V+ ++ A G L GD I
Sbjct: 2 MRPPIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITH 60
Query: 259 VNGVS 263
+NG S
Sbjct: 61 INGES 65
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 50.2 bits (120), Expect = 4e-08
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
K+V + G LG+ I G L + I + P A G L +GDQI+ VNG S
Sbjct: 22 KKVNLVLGDGRSLGLTIR-GGAEYGLG-IYITGVDPGSEAEGSG-LKVGDQILEVNGRSF 78
Query: 265 VAY-----MEFLKANG 275
+ + LK++
Sbjct: 79 LNILHDEAVRLLKSSR 94
Score = 47.9 bits (114), Expect = 3e-07
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
I + G AE G++VG +I+E+N +S + + H++ V LL +S
Sbjct: 50 ITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSS 93
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 49.7 bits (119), Expect = 4e-08
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 217 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
LG IV G VV+ + P G A R G+L GD I+ + G ++
Sbjct: 28 LGFGIV----GGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQ 72
Score = 40.4 bits (95), Expect = 8e-05
Identities = 11/42 (26%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ +++ GG+A+R G ++ G I++I +V + E++ +L
Sbjct: 42 VRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVL 83
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 49.7 bits (119), Expect = 4e-08
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ ++L GG A+R GVR G RI+E+N +V H+++V+L+
Sbjct: 47 VSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLI 87
Score = 41.2 bits (97), Expect = 5e-05
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
P ++ + P GAA R G + GD+I+ VNGV++
Sbjct: 43 PLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNV 75
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 49.3 bits (118), Expect = 5e-08
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I S+ AE G+R RI+E+N + H +V+ +
Sbjct: 37 IRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAI 77
Score = 37.7 bits (88), Expect = 7e-04
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
P I ++ P A G L D+I+ VNGV +
Sbjct: 33 PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCM 65
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 49.3 bits (118), Expect = 5e-08
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ + G A++ G++ G R++ + +SV + HE+ V+ +
Sbjct: 34 LWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRI 74
Score = 39.2 bits (92), Expect = 2e-04
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 217 LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
G ++ E P + + P A + G + GD+++AV G S+
Sbjct: 16 FGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESV 62
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 49.3 bits (118), Expect = 5e-08
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
I + G AE G++ ++ +N +SV A+ H+ +V ++
Sbjct: 34 IKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKG 77
Score = 37.3 bits (87), Expect = 0.001
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+I ++ P A G L D ++AVNG S+
Sbjct: 32 QIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSV 62
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and
amyloid beta A4 protein...; chimera, Fe65L, PID domain,
amyloid precursor protein; NMR {Mus musculus}
Length = 185
Score = 51.4 bits (122), Expect = 5e-08
Identities = 21/143 (14%), Positives = 56/143 (39%), Gaps = 24/143 (16%)
Query: 31 FRLKFLGSVQVDEDDPK---CCKRRVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNT 87
FR+++LG + VD P ++ +M + V++ ++ + V++
Sbjct: 18 FRVQYLGMLPVDR--PVGMDTLNSAIENLMTSSSKE-----DWPSVNMNVADATVTVISE 70
Query: 88 DLKE-IMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESD-E 145
+E ++++ +R +S++ D+ F+ ++ + CHVF +
Sbjct: 71 KNEEEVLVECRVRFLSFMGVGKDVHTFA----FIMDTGNQ--------RFECHVFWCEPN 118
Query: 146 AQFIAQSIGQAFQVAYMEFLKAN 168
A +++++ A
Sbjct: 119 AANVSEAVQAACSGPSSGIEGRG 141
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 49.0 bits (117), Expect = 5e-08
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+ S+ G AE ++V II INN ++ +A +
Sbjct: 32 VASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKA 75
Score = 40.1 bits (94), Expect = 7e-05
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 202 ELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 261
+++ + K G I W P + +A++ A L + D+IIA+N
Sbjct: 4 DMRISINQTPGKSLDFGFTIK---WDI--PGIFVASVEAGSPAEFSQ-LQVDDEIIAINN 57
Query: 262 VSLV 265
Sbjct: 58 TKFS 61
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 48.9 bits (117), Expect = 6e-08
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
K + + K E LG I + +++A + GAA R G +++GD++ VNG+ +
Sbjct: 6 KIIRLVK-NREPLGATIKK---DEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPV 61
Score = 47.7 bits (114), Expect = 2e-07
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
+ ++RGG A+R G + VG + E+N V E+I+ +LA S G
Sbjct: 32 VARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGA 79
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 49.4 bits (118), Expect = 6e-08
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+ S+ GG+A R G+R+G +IE+N Q+VV V H ++VN++
Sbjct: 49 LESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQG 92
Score = 36.0 bits (83), Expect = 0.003
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 204 QKEVVVPKAKGEILGVVIVES----------GWGSMLPTVVIANLAPAGAAARCGQLNIG 253
+K V++ K E G V+ + + + ++ G A R G L +G
Sbjct: 8 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMG 66
Query: 254 DQIIAVNGVSLV 265
D +I VNG ++V
Sbjct: 67 DFLIEVNGQNVV 78
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 49.3 bits (118), Expect = 6e-08
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 204 QKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 263
+ V V G G + G P + ++ + G AA ++ GD+++ +NG
Sbjct: 10 FQYVPVQLQGGAPWGFTLK-GGLEHCEP-LTVSKIEDGGKAALSQKMRTGDELVNINGTP 67
Query: 264 LVAY----MEFLKANG 275
L + +K +
Sbjct: 68 LYGSRQEALILIKGSF 83
Score = 34.2 bits (79), Expect = 0.011
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
+ + GG A +R G ++ IN + ++ + L+ S
Sbjct: 39 VSKIEDGGKAALSQKMRTGDELVNINGTP-LYGSRQEALILIKGSFRI 85
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 49.7 bits (119), Expect = 6e-08
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 210 PKAKGEILGVVIV--ESGWG-------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 260
+ KG L + G+G + + ++ P G AA+ G++ GD I+ +N
Sbjct: 14 SQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYIN 73
Query: 261 GVSLV 265
V ++
Sbjct: 74 EVCVL 78
Score = 42.4 bits (100), Expect = 2e-05
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ S++ G A + G + G I+ IN V+ H +V L
Sbjct: 48 VKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLF 89
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 48.8 bits (117), Expect = 6e-08
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ S+ GG A + GV+ G RII++N V H ++V L+
Sbjct: 33 VQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLI 73
Score = 37.3 bits (87), Expect = 8e-04
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVS 263
V++ ++ P GAA + G + GD+II VNG
Sbjct: 31 VLVQSVRPGGAAMKAG-VKEGDRIIKVNGTM 60
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 49.2 bits (118), Expect = 7e-08
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 204 QKEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 260
++E+ + + LG IV + + S + ++ + GAAA G+L GD+I++VN
Sbjct: 8 EEEINLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVN 66
Query: 261 GVSLV 265
G L
Sbjct: 67 GQDLK 71
Score = 40.8 bits (96), Expect = 5e-05
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ + G A G ++ G +I+ +N Q + + H+ V+L
Sbjct: 41 VSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLF 82
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 50.0 bits (119), Expect = 7e-08
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+ S+ GG+A R G+R+G +IE+N Q+VV V H ++VN++
Sbjct: 69 LESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQG 112
Score = 35.7 bits (82), Expect = 0.006
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 204 QKEVVVPKAKGEILGVVIVES----------GWGSMLPTVVIANLAPAGAAARCGQLNIG 253
+K V++ K E G V+ + + + ++ G A R G L +G
Sbjct: 28 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMG 86
Query: 254 DQIIAVNGVSLV 265
D +I VNG ++V
Sbjct: 87 DFLIEVNGQNVV 98
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 48.9 bits (117), Expect = 7e-08
Identities = 8/41 (19%), Positives = 22/41 (53%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ ++ GG AER G++ ++++N + V ++ + +
Sbjct: 28 VQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEI 68
Score = 37.3 bits (87), Expect = 8e-04
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVS 263
V + + G A R G L D ++ +N
Sbjct: 26 VRVQAVDSGGPAERAG-LQQLDTVLQLNERP 55
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 48.4 bits (116), Expect = 7e-08
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ ++RG A+ G+R G +I+ +N +V HE +V L+
Sbjct: 27 LSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLI 67
Score = 38.0 bits (89), Expect = 3e-04
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
V++ + A G L GDQI+AVN +++
Sbjct: 25 CVLSCVMRGSPADFVG-LRAGDQILAVNEINV 55
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 48.9 bits (117), Expect = 7e-08
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 200 KKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 259
+ L + V + K G LG I G S L + I+ + P A R G L GDQ++AV
Sbjct: 12 TQFLPRIVTLKKPPGAQLGFNIR-GGKASQLG-IFISKVIPDSDAHRAG-LQEGDQVLAV 68
Query: 260 NGVSL 264
N V
Sbjct: 69 NDVDF 73
Score = 44.3 bits (105), Expect = 4e-06
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
I ++ A R G++ G +++ +N+ + H K V +L T+
Sbjct: 45 ISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTA 88
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 48.4 bits (116), Expect = 8e-08
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 206 EVVVPK-AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ K ++G G +V G + I +L G AA G++ GD I++VN +
Sbjct: 3 HTKLRKSSRG--FGFTVV--GGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCV 58
Query: 265 V 265
+
Sbjct: 59 L 59
Score = 42.3 bits (100), Expect = 1e-05
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I SL+ G A G + G I+ +N+ V+ H ++V +
Sbjct: 29 IKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIF 70
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 50.7 bits (121), Expect = 8e-08
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 217 LGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
LG+ I+ G G+ + + + + GAA R G++ + D ++ V+G SLV
Sbjct: 93 LGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLV 145
Score = 42.2 bits (99), Expect = 6e-05
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ ++ GG A R G ++V ++E++ S+V V ++L
Sbjct: 115 VKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVL 156
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 49.3 bits (118), Expect = 8e-08
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+++++ K LG IV G G + ++ + G A G+L GD+I++VNGV+L
Sbjct: 17 RKIILHK-GSTGLGFNIV--G-GEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNL 72
Score = 42.7 bits (101), Expect = 2e-05
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ +L GG A+ G +R G RI+ +N ++ HE+ L
Sbjct: 43 VSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAAL 84
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 49.0 bits (117), Expect = 9e-08
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
I + G AE+ G+ G R++ IN V H ++V L+ S
Sbjct: 42 IRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKS 85
Score = 39.4 bits (92), Expect = 2e-04
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+E + K +G+ G + +I + A + G L GD+++ +NGV +
Sbjct: 15 RECKLSKQEGQNYGFFLRI---EKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFV 70
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 48.9 bits (117), Expect = 1e-07
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 217 LGVVIVESGWGSMLPT----VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
LG+ I+ G G+ + + + + GAA R G++ + D ++ V+G SLV
Sbjct: 17 LGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLV 69
Score = 40.4 bits (95), Expect = 8e-05
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ ++ GG A R G ++V ++E++ S+V V ++L
Sbjct: 39 VKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVL 80
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 48.9 bits (117), Expect = 1e-07
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 206 EVVVPK-AKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 261
E+ + K KG LG I + ++ + + GAA + G+L +GD+++ VN
Sbjct: 27 EIKLFKGPKG--LGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNN 84
Query: 262 VSLV 265
SL
Sbjct: 85 YSLE 88
Score = 39.3 bits (92), Expect = 2e-04
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ ++ GG A++ G ++VG R++ +NN S+ V HE+ V +L
Sbjct: 58 VTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAIL 99
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 48.1 bits (115), Expect = 1e-07
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
+ I + GAA + G+L IGD+++AVN +L
Sbjct: 35 IYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQ 67
Score = 40.0 bits (94), Expect = 9e-05
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I ++ GG A++ G +++G R++ +NN ++ V HE+ V L
Sbjct: 37 ITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASL 78
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 48.6 bits (116), Expect = 1e-07
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
I + G AE+ G+ G R++ IN V H ++V L+ S
Sbjct: 30 IRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKS 73
Score = 38.6 bits (90), Expect = 4e-04
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+E + K +G+ G + +I + A + G L GD+++ +NGV +
Sbjct: 3 RESKLSKQEGQNYGFFLRI---EKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFV 58
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 48.7 bits (116), Expect = 1e-07
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I S+ AE G+R RI+E+N + H +V+ +
Sbjct: 37 IRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAI 77
Score = 34.1 bits (78), Expect = 0.018
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 231 PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
P I ++ P A G L D+I+ VNGV +
Sbjct: 33 PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCME 66
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 48.6 bits (116), Expect = 1e-07
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 199 AKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIA 258
++ +K+V + LG I SG + I+++ P +A G L IGDQI+
Sbjct: 11 NRENKEKKVFISLVGSRGLGCSIS-SGPIQKPG-IFISHVKPGSLSAEVG-LEIGDQIVE 67
Query: 259 VNGVSLVAY-----MEFLKANGIEDHSFVKEMDYQEVLNSQE 295
VNGV + LK++ + +E+ +
Sbjct: 68 VNGVDFSNLDHKEAVNVLKSSR-SLTISIVAAAGRELFMTDR 108
Score = 44.8 bits (106), Expect = 3e-06
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I + G ++ G+ +G +I+E+N + H++ VN+L
Sbjct: 45 ISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVL 85
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 48.6 bits (116), Expect = 2e-07
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ +V+ + LG IV G G + I+ + G A G+L GDQI++VNGV L
Sbjct: 16 RRIVIHR-GSTGLGFNIV--G-GEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 71
Score = 40.9 bits (96), Expect = 7e-05
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I +L GG A+ G +R G +I+ +N + HE+ L
Sbjct: 42 ISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL 83
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 48.1 bits (115), Expect = 2e-07
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 217 LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
LG I + ++ + + GAA + G+L IGD+++AVN VSL
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLE 67
Score = 39.6 bits (93), Expect = 2e-04
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ ++ GG A + G +++G +++ +N+ S+ V HE+ V L
Sbjct: 37 VTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTAL 78
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 48.5 bits (116), Expect = 2e-07
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
+ + N+ P GAA + G+L GD++I VNGV LV
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLV 92
Score = 40.8 bits (96), Expect = 9e-05
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ ++L G A + G ++ G R+IE+N +V E++V+LL
Sbjct: 62 VKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLL 103
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 50.5 bits (120), Expect = 2e-07
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I S+ AE G+R RI+E+N + H +V+ +
Sbjct: 37 IRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAI 77
Score = 36.3 bits (83), Expect = 0.009
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 219 VVIV--ESGWGSML------PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ SG+G L P I ++ P A G L D+I+ VNGV +
Sbjct: 13 CTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCM 65
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 48.1 bits (115), Expect = 2e-07
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ +V+ + LG IV G G + I+ + G A G+L GDQI++VNGV L
Sbjct: 13 RRIVIHRGSTG-LGFNIV--G-GEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDL 68
Score = 41.9 bits (99), Expect = 3e-05
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I +L GG A+ G +R G +I+ +N + HE+ L
Sbjct: 39 ISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL 80
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 48.7 bits (116), Expect = 2e-07
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 205 KEVVVPKAK-GEILGVVIVESGWGSMLPT-------VVIANLAPAGAAARCGQLNIGDQI 256
+ V + K + LG I + + P + I+ L P G A G L + D++
Sbjct: 31 RRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEV 90
Query: 257 IAVNGVSL 264
+ VNG+ +
Sbjct: 91 LEVNGIEV 98
Score = 43.3 bits (102), Expect = 1e-05
Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I L+ GG+A+ G + V ++E+N V +++ +++ +
Sbjct: 69 ISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRN 116
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 48.2 bits (115), Expect = 2e-07
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 217 LGVVIVESGWGSMLPT---VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
LG I+ + PT +VI +L G A R G L GD++++VN L
Sbjct: 28 LGFSIL-DYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCL 77
Score = 41.2 bits (97), Expect = 4e-05
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I SL+ G+AER GG+ G R++ +N + + V +L
Sbjct: 48 IRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEIL 89
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 48.3 bits (115), Expect = 2e-07
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 192 GDELQMFAKKELQKEVVV--PKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQ 249
GD Q ++EL+ E V + LG+ + + I+ + P AA+ G+
Sbjct: 7 GDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGR 66
Query: 250 LNIGDQIIAVNGVSL 264
+ GD+II +NG+ +
Sbjct: 67 IREGDRIIQINGIEV 81
Score = 35.6 bits (82), Expect = 0.005
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
I + IA + G +R G RII+IN V + +
Sbjct: 52 ISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEEN 96
>2yt0_A Amyloid beta A4 protein and amyloid beta A4 precursor
protein-binding family B member...; chimera, Fe65L, PID
domain, amyloid precursor protein; NMR {Mus musculus}
PDB: 2yt1_A
Length = 176
Score = 49.3 bits (117), Expect = 2e-07
Identities = 21/131 (16%), Positives = 56/131 (42%), Gaps = 24/131 (18%)
Query: 31 FRLKFLGSVQVDEDDPK---CCKRRVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNT 87
FR+++LG + VD P ++ +M + V++ ++ + V++
Sbjct: 64 FRVQYLGMLPVDR--PVGMDTLNSAIENLMT-----SSSKEDWPSVNMNVADATVTVISE 116
Query: 88 DLKE-IMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE- 145
+E ++++ +R +S++ D+ F+ ++ + CHVF +
Sbjct: 117 KNEEEVLVECRVRFLSFMGVGKDVHTFA----FIMDTGNQ--------RFECHVFWCEPN 164
Query: 146 AQFIAQSIGQA 156
A +++++ A
Sbjct: 165 AANVSEAVQAA 175
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 47.7 bits (114), Expect = 3e-07
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
+ + N+ P GAA + G+L GD++I VNGV L
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLA 73
Score = 40.4 bits (95), Expect = 9e-05
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ ++L G A + G ++ G R+IE+N + E++V+LL
Sbjct: 43 VKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLL 84
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 46.9 bits (112), Expect = 3e-07
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
V V K+ LG + G L + ++ + +A R G L +GD+I VNG+SL
Sbjct: 12 HSVRVEKSPAGRLGFSVR-GGSEHGLG-IFVSKVEEGSSAERAG-LCVGDKITEVNGLSL 68
Score = 45.4 bits (108), Expect = 1e-06
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ + G AER G+ VG +I E+N S+ + V +L
Sbjct: 40 VSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVL 80
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 47.5 bits (113), Expect = 3e-07
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
+ L A G + G I+ I + +++ LL + GE
Sbjct: 40 VHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGE 86
Score = 37.9 bits (88), Expect = 7e-04
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
V + L P +A+ G GD I+++ GV
Sbjct: 38 VQVHFLDPHCSASLAG-AKEGDYIVSIQGVDC 68
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 47.3 bits (113), Expect = 3e-07
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I + G A R GVRVG +++E+N ++ H + V L
Sbjct: 50 ISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEAL 90
Score = 43.5 bits (103), Expect = 6e-06
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
+ I+ ++ G AAR G + +GD+++ VNGV+L
Sbjct: 48 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQ 79
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 46.6 bits (111), Expect = 3e-07
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 205 KEVVVPKA-KGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 263
+V + K+ K E G+ + + + ++ AAR G + GD ++ +NG
Sbjct: 4 TKVTLVKSAKNEEYGLRLASH--------IFVKEISQDSLAARDGNIQEGDVVLKINGTV 55
Query: 264 L 264
Sbjct: 56 T 56
Score = 42.4 bits (100), Expect = 1e-05
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
+ + + +A R G ++ G +++IN + L+ S G+
Sbjct: 27 VKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGK 74
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 46.1 bits (110), Expect = 4e-07
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ + ++ AAR G + GD ++ +NG
Sbjct: 23 IFVKEISQDSLAARDGNIQEGDVVLKINGTVT 54
Score = 42.3 bits (100), Expect = 1e-05
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
+ + + +A R G ++ G +++IN + L+ S G+
Sbjct: 25 VKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGK 72
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 46.6 bits (111), Expect = 5e-07
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ + G +AE+ G+RVG +I+ +N++S+ V H + V L
Sbjct: 39 VSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKAL 79
Score = 43.1 bits (102), Expect = 1e-05
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 205 KEVVVPKAKGEI-LGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVN 260
+ V + +AK LG I E G G + ++ + P A + G L +GDQI+ VN
Sbjct: 10 RLVSLRRAKAHEGLGFSIRGGSEHGVG-----IYVSLVEPGSLAEKEG-LRVGDQILRVN 63
Query: 261 GVSL 264
SL
Sbjct: 64 DKSL 67
>1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B, member
2; phosphotyrosine-interaction domain, amyloid disease,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.2
PDB: 2roz_B
Length = 136
Score = 47.6 bits (113), Expect = 5e-07
Identities = 21/133 (15%), Positives = 56/133 (42%), Gaps = 24/133 (18%)
Query: 31 FRLKFLGSVQVDEDDPK---CCKRRVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNT 87
FR+++LG + VD P ++ +M + V++ ++ + V++
Sbjct: 18 FRVQYLGMLPVDR--PVGMDTLNSAIENLMTSSSKE-----DWPSVNMNVADATVTVISE 70
Query: 88 DLKE-IMMDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDE- 145
+E ++++ +R +S++ D+ F+ ++ + CHVF +
Sbjct: 71 KNEEEVLVECRVRFLSFMGVGKDVHTFA----FIMDTGNQ--------RFECHVFWCEPN 118
Query: 146 AQFIAQSIGQAFQ 158
A +++++ A
Sbjct: 119 AANVSEAVQAACS 131
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 46.7 bits (111), Expect = 5e-07
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ L A G R G I+ I + +++ LL
Sbjct: 48 VHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLL 88
Score = 38.6 bits (90), Expect = 3e-04
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
V + L P +A+ G GD I+++ V
Sbjct: 46 VQVHFLDPYCSASVAG-AREGDYIVSIQLVDC 76
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 46.2 bits (110), Expect = 6e-07
Identities = 7/47 (14%), Positives = 17/47 (36%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I + G A + G I+ I+ ++ H + + + +
Sbjct: 33 ITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQ 79
Score = 38.5 bits (90), Expect = 4e-04
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 11/62 (17%)
Query: 212 AKGEILGVVIVE-SGWG--------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 262
+ G VV+ + WG P +VI + P AA L GD I+A++G
Sbjct: 2 SSGSSGNVVLPGPAPWGFRLSGGIDFNQP-LVITRITPGSKAAAAN-LCPGDVILAIDGF 59
Query: 263 SL 264
Sbjct: 60 GT 61
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 46.1 bits (110), Expect = 7e-07
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I + G A R GVRVG +++E+N ++ H + V L
Sbjct: 38 ISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEAL 78
Score = 43.4 bits (103), Expect = 6e-06
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
+ I+ ++ G AAR G + +GD+++ VNGV+L
Sbjct: 36 IFISRVSEEGPAARAG-VRVGDKLLEVNGVALQ 67
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 45.4 bits (108), Expect = 8e-07
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 216 ILGVVIVESGWGSML-----PTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
++GV++++S + + + G A + G L+ GD I+ +NG
Sbjct: 1 MIGVLLMKSRANEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVT 54
Score = 43.5 bits (103), Expect = 4e-06
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 313 ICSLLRGGIAER-GGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
+ + R G+A + G + G I++IN + L+ S G+
Sbjct: 25 VKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGK 72
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 45.4 bits (108), Expect = 1e-06
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
+ + G AE +R G I+ IN QS + H + + + S
Sbjct: 34 VTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASP 80
Score = 38.0 bits (89), Expect = 4e-04
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 11/62 (17%)
Query: 212 AKGEILGVVIVE-SGWG--------SMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGV 262
+ L V + + WG P +++ + G A L GD I+A+NG
Sbjct: 3 SGSSGLTVDVAGPAPWGFRISGGRDFHTP-IIVTKVTERGKAEAAD-LRPGDIIVAINGQ 60
Query: 263 SL 264
S
Sbjct: 61 SA 62
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 45.0 bits (107), Expect = 1e-06
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I SL GG A + VR+G ++ I+ + + H + N + G
Sbjct: 31 ISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGS 77
Score = 37.6 bits (88), Expect = 5e-04
Identities = 9/32 (28%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ I++L G AA+ + IGD +++++G++
Sbjct: 29 LTISSLKDGGKAAQAN-VRIGDVVLSIDGINA 59
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 45.1 bits (107), Expect = 1e-06
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPT------VVIANLAPAGAAARCGQLNIGDQIIA 258
E+ V K LG I G P + + + P G A+ L GD+II
Sbjct: 3 MEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQ 60
Query: 259 VNGVSLV 265
NG S +
Sbjct: 61 ANGYSFI 67
Score = 36.6 bits (85), Expect = 0.002
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+ + G A ++ G +II+ N S + + H + V+LL T
Sbjct: 39 VTRVQPEGPAS-KLLQPGDKIIQANGYSFINIEHGQAVSLLKTF 81
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 45.3 bits (108), Expect = 1e-06
Identities = 10/47 (21%), Positives = 16/47 (34%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I + G A + G I IN +S + H + N +
Sbjct: 36 ISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDH 82
Score = 38.0 bits (89), Expect = 5e-04
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ I+ + AA L GD I A+NG S
Sbjct: 34 LTISRVHAGSKAALAA-LCPGDLIQAINGEST 64
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 46.2 bits (109), Expect = 1e-06
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
+ + GG AE G+++G +I+++N + V H++ L E
Sbjct: 68 VTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEE 114
Score = 39.2 bits (91), Expect = 4e-04
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 179 MDYQEVLNSQEIFGDELQMFAKKELQKEVV-VPKAKGEILGVVIV----ESGWGSMLPT- 232
M + +S G E F + E+ + + + ILG I + +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSED 60
Query: 233 -----VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ + ++ G A G L IGD+I+ VNG +
Sbjct: 61 KTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDM 96
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 45.5 bits (108), Expect = 1e-06
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 204 QKEVVVPKAKGEILGVVIVESGWGSMLPT------VVIANLAPAGAAARCGQLNIGDQII 257
++E+ V K LG I G P + + + P G A+ L GD+II
Sbjct: 10 KQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKII 67
Query: 258 AVNGVSLV 265
NG S +
Sbjct: 68 QANGYSFI 75
Score = 37.8 bits (88), Expect = 7e-04
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+ + G A ++ G +II+ N S + + H + V+LL T
Sbjct: 47 VTRVQPEGPAS-KLLQPGDKIIQANGYSFINIEHGQAVSLLKTF 89
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 47.2 bits (112), Expect = 1e-06
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 205 KEVVVPKAKGEILGVVIV---ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 261
KEV + + E LG+ + E G G + I++L G A G L +GD+I+ +NG
Sbjct: 86 KEVRLDRLHPEGLGLSVRGGLEFGCG-----LFISHLIKGGQADSVG-LQVGDEIVRING 139
Query: 262 VSL 264
S+
Sbjct: 140 YSI 142
Score = 47.2 bits (112), Expect = 2e-06
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
I L++GG A+ G++VG I+ IN S+ + HE+++NL+ T
Sbjct: 114 ISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRTE 157
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 45.5 bits (108), Expect = 2e-06
Identities = 7/47 (14%), Positives = 21/47 (44%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
+ + G IA + G+ G +++E N ++ + ++ ++
Sbjct: 46 VSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDT 92
Score = 42.5 bits (100), Expect = 2e-05
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ V V K E LG+ IV + ++ + A + G L GDQ++ NG++L
Sbjct: 21 RHVKVQKG-SEPLGISIV----SGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINL 74
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 44.7 bits (106), Expect = 2e-06
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I SL GG A + VR+G ++ I+ S + H + N + G
Sbjct: 33 ISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGS 79
Score = 38.9 bits (91), Expect = 2e-04
Identities = 9/32 (28%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ I++L G A++ + IGD +++++G+S
Sbjct: 31 LTISSLKDGGKASQAH-VRIGDVVLSIDGISA 61
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 44.7 bits (106), Expect = 2e-06
Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+ ++ GG A G + G +I+++NN+ + E+ V++L +
Sbjct: 35 VVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILREA 77
Score = 37.7 bits (88), Expect = 6e-04
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ + + G+A G+L GDQI+ +N
Sbjct: 33 LTVVAVTAGGSA--HGKLFPGDQILQMNNEPA 62
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 45.1 bits (107), Expect = 3e-06
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 204 QKEVVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 259
Q V + K G+ + + + ++VI+++ P G A G L D+++ V
Sbjct: 15 QYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMV 72
Query: 260 NGVSLV 265
NG +
Sbjct: 73 NGTPME 78
Score = 41.3 bits (97), Expect = 5e-05
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I +L GG A+ G ++ R++ +N + V H V L
Sbjct: 50 ISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQL 89
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 3e-06
Identities = 37/225 (16%), Positives = 65/225 (28%), Gaps = 83/225 (36%)
Query: 116 RRRFVSQEADEPPKISRTPKMICHVFESDEA-----QFIAQ-SIGQAFQVAYMEFLKANG 169
+ + +E +E + F S++ QF Q ++ + A E LK+ G
Sbjct: 1702 KTEKIFKEINE-----HSTSYT---FRSEKGLLSATQF-TQPALT-LMEKAAFEDLKSKG 1751
Query: 170 IED-------HS---------------F------VKE--MDYQEVLNSQEIFGDELQMFA 199
+ HS V M Q + E+ M A
Sbjct: 1752 LIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 200 KKELQKEVVVPKAKGEILGVVI----VESGWGSMLPTVVIANLAPAGAAARCGQLNI-GD 254
+ V E L V+ +GW V I N N+
Sbjct: 1812 ---INPGRVAASFSQEALQYVVERVGKRTGW-----LVEIVN------------YNVENQ 1851
Query: 255 QIIA---VNGV-SLVAYMEFLKANGIE----DHSF----VKEMDY 287
Q +A + + ++ + F+K I+ S V+ +
Sbjct: 1852 QYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 42.0 bits (98), Expect = 3e-04
Identities = 60/372 (16%), Positives = 100/372 (26%), Gaps = 127/372 (34%)
Query: 3 YVDSHHVGCTQALPEDPVVDTGLGPGTLFRLKFLG---------SVQVDEDDPKCCKRRV 53
YV S V ++ D V++ L F +L + + D + +
Sbjct: 67 YV-SSLVEPSKVGQFDQVLNLCLTE---FENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 54 KK----VMVEEAAPEGETQPSTEVDLFISTE----KIMVL-----NTD--LKEIMMDHAL 98
K + P + S LF + +++ + NTD +E L
Sbjct: 123 IKNYITARIMAKRPFDKKSNSA---LFRAVGEGNAQLVAIFGGQGNTDDYFEE------L 173
Query: 99 RTI--SYIADIGDLVVLMARR--RFVSQEADEPPKISR-------------TP------- 134
R + +Y +GDL+ A + D ++ TP
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 135 -----KMI-----------CHVFESDEAQFIAQSIG-----QAFQVAYMEFLKANGIEDH 173
+I + + + G Q A A
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA---VAIAETDSWE 290
Query: 174 SFVKEMD-YQEVL-----NSQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVIVESGWG 227
SF + VL E + + L+ + E+ G
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPN--TSLPPSILEDSL---------------ENNEG 333
Query: 228 SMLPTVVIANLAPAGAAARCGQLN----IGDQI-IA-VNG-----VS--------LVAYM 268
P + I+NL + N G Q+ I+ VNG VS L +
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 269 EFLKANGIEDHS 280
KA D S
Sbjct: 394 RKAKAPSGLDQS 405
Score = 37.0 bits (85), Expect = 0.010
Identities = 59/374 (15%), Positives = 108/374 (28%), Gaps = 124/374 (33%)
Query: 59 EEAAPEGETQPSTEVDL------FISTEK--------IMVLNTDLKE----IMMD---HA 97
E A + E P+T +L ++S+ VLN L E + HA
Sbjct: 46 EGFAADDE--PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 98 L-RTISYIADIGDLVVLMARRRFVS--QEADEPPKISRTPKMICHVFESDEAQFIAQSIG 154
L + D + + +++ A P + V AQ +A G
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV-GEGNAQLVAIFGG 162
Query: 155 QAFQVAYMEFLKANG-IEDHSFVKEM-----DYQEVLNSQEIF---GDELQMFAKKELQK 205
Q G +D + +E+ Y ++ ++ + L + L
Sbjct: 163 Q-------------GNTDD--YFEELRDLYQTYHVLV--GDLIKFSAETLSELIRTTLDA 205
Query: 206 EVVVPKAKGEILGVVIVESGWG-----------------SMLPTVVIANLAPAGAAARCG 248
E V + G+ I+E W S P + + LA A+
Sbjct: 206 EKVFTQ------GLNILE--WLENPSNTPDKDYLLSIPISC-PLIGVIQLAHYVVTAKLL 256
Query: 249 QLNIGDQIIAVNGVS------LVAYMEFLKANGIEDHSFVKEMD-YQEVL-----NSQEI 296
G+ + G + + A A SF + VL E
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTA---VAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 297 FG----------DELQ--------MFA-----KKELQKEICSLLRGGIAERGGVRVGHRI 333
+ D L+ M + ++++Q + + + V +
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV-NKTNSHLPAGKQVEISL-- 370
Query: 334 IEIN--NQSVVAVP 345
+N VV+ P
Sbjct: 371 --VNGAKNLVVSGP 382
Score = 35.0 bits (80), Expect = 0.039
Identities = 44/300 (14%), Positives = 78/300 (26%), Gaps = 124/300 (41%)
Query: 93 M-MDHALRTISYIADIGDLVVLMARRRFVSQEADE---------PPKISRT-PKMICHVF 141
M MD L S A + V AD I P + F
Sbjct: 1631 MGMD--LYKTSKAA------------QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHF 1676
Query: 142 ESDEAQFIAQSIGQAFQVAYMEFLKANGIEDHSFVKEMDYQEVLNSQEIFGDELQMFAKK 201
++ + I + Y M ++ +++ + +
Sbjct: 1677 GGEKGKRIRE--------NYSA---------------MIFETIVDGKLKT---------E 1704
Query: 202 ELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNG 261
++ KE+ E S G + T PA + +
Sbjct: 1705 KIFKEI------NEHSTSYTFRSEKGLLSAT---QFTQPA--------------LTLME- 1740
Query: 262 VSLVAYMEFLKANGIED-------HSFVKEMDYQ------EVLNSQEIFGDELQMFAKKE 308
A E LK+ G+ HS + E Y +V++ +++
Sbjct: 1741 ---KAAFEDLKSKGLIPADATFAGHS-LGE--YAALASLADVMS----IESLVEVVFY-- 1788
Query: 309 LQKEICSLLRG----GIAERGGV-RVGHRIIEINNQSVVAVPHE----KIVNLLATSVGE 359
RG R + R + +I IN V A + +V + G
Sbjct: 1789 ---------RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW 1839
Score = 33.5 bits (76), Expect = 0.12
Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 43/132 (32%)
Query: 94 MD-HALR--TISYIADIGDL--VVLMARRRFV--SQEADEPPKISRTPKMICHVFESDEA 146
MD ++ R T+S+ G L V+L+ F SQ ++ KI P F +D+
Sbjct: 1 MDAYSTRPLTLSH----GSLEHVLLVPTASFFIASQLQEQFNKILPEPT---EGFAADDE 53
Query: 147 Q------------FIAQSIGQAFQVAYME------------FLKANGIEDHSFVKEMDYQ 182
+++ + + + + +L+ N I H+ ++ +
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--HALAAKLLQE 111
Query: 183 E---VLNSQEIF 191
++ ++E+
Sbjct: 112 NDTTLVKTKELI 123
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 44.2 bits (105), Expect = 3e-06
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I L GG A + GV VG ++ I+ ++ ++ H + N +
Sbjct: 31 ISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGER 77
Score = 39.2 bits (92), Expect = 2e-04
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ I+ L P G AA+ G + +GD +++++G +
Sbjct: 29 LSISRLTPGGKAAQAG-VAVGDWVLSIDGENA 59
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 44.8 bits (106), Expect = 3e-06
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 205 KEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+V KG+ +G+ + G + +A + AA+ G L GDQI+ VN V
Sbjct: 29 SMKLVKFRKGDSVGLRLA----GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDF 83
Query: 265 V------AYMEFLKANGIEDHSFV---KEMDYQEVLNSQ 294
A + L E+ + + K+ Y+ ++ S
Sbjct: 84 TNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESD 122
Score = 42.9 bits (101), Expect = 2e-05
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
+ +L A + G+ G +I+ +NN + E+ V L
Sbjct: 55 VAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFL 95
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 43.8 bits (104), Expect = 4e-06
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
+ + G A+ +R G I+ IN +S + H + + + S
Sbjct: 30 VTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSP 76
Score = 37.2 bits (87), Expect = 7e-04
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 225 GWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
G P +++ +A G A L GD I+A+NG S
Sbjct: 21 GRDFHTP-IMVTKVAERGKAKDAD-LRPGDIIVAINGESA 58
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 43.9 bits (104), Expect = 5e-06
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 204 QKEVVVPKAKGEILGVVIV----ESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAV 259
Q V + +A G G+ I + S ++VI+++ G A GQL D++ V
Sbjct: 8 QHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAMV 65
Query: 260 NGVSL 264
NGVS+
Sbjct: 66 NGVSM 70
Score = 41.6 bits (98), Expect = 3e-05
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
I +L+GG AE G ++ R+ +N S+ V H V L
Sbjct: 43 ISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQL 82
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 43.0 bits (102), Expect = 6e-06
Identities = 7/47 (14%), Positives = 19/47 (40%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I + G A + + G ++ I+ + + H + N + ++
Sbjct: 29 ISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYN 75
Score = 37.6 bits (88), Expect = 5e-04
Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ I+ + P AA+ L+ GD ++A++GV+
Sbjct: 27 LTISRITPGSKAAQSQ-LSQGDLVVAIDGVNT 57
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 42.7 bits (101), Expect = 8e-06
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
I + G A + +G I I+ ++ + H + N +
Sbjct: 31 ISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDN 77
Score = 36.2 bits (84), Expect = 0.002
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ I+ + P AA L IGD I A++G +
Sbjct: 29 LAISRVTPGSKAALAN-LCIGDVITAIDGENT 59
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 42.3 bits (100), Expect = 1e-05
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 322 AERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
G++ G I+E+N ++V A+ H ++V++L
Sbjct: 38 PRSRGLKEGDLIVEVNKKNVQALTHNQVVDML 69
Score = 34.6 bits (80), Expect = 0.006
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 244 AARCGQLNIGDQIIAVNGVSL 264
+ R L GD I+ VN ++
Sbjct: 37 SPRSRGLKEGDLIVEVNKKNV 57
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 42.7 bits (100), Expect = 2e-05
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLA 354
+ S+ G+A + G++ G I+EINN++ A+ + + L+
Sbjct: 48 VNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLS 89
Score = 38.1 bits (88), Expect = 6e-04
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 194 ELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIG 253
E+++ K + + G + S + + + ++ G A++ G L G
Sbjct: 8 EIEICPKVTQSIHIEKSDTAADTYGFS-LSSVEEDGIRRLYVNSVKETGLASKKG-LKAG 65
Query: 254 DQIIAVNGVSL 264
D+I+ +N +
Sbjct: 66 DEILEINNRAA 76
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 43.3 bits (101), Expect = 8e-05
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+ +L A + G+ G +I+ +NN + E+ V L
Sbjct: 35 VAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDL 78
Score = 39.8 bits (92), Expect = 0.001
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 208 VVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+V KG+ +G+ + G + +A + AA+ G L GDQI+ VN V
Sbjct: 12 LVKFRKGDSVGLRLA----GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDF 63
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 39.2 bits (91), Expect = 2e-04
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLA 354
+ S+ G+A + G++ G I+EINN++ A+ + + L+
Sbjct: 39 VNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLS 80
Score = 36.1 bits (83), Expect = 0.002
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 222 VESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ S + + + ++ G A++ G L GD+I+ +N +
Sbjct: 26 LSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAA 67
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 39.4 bits (92), Expect = 2e-04
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 325 GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
G++ G I EI +Q+V + H ++V +L
Sbjct: 48 QGLQKGDIIKEIYHQNVQNLTHLQVVEVL 76
Score = 37.9 bits (88), Expect = 8e-04
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 205 KEVVVPKAKGEI-LGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 263
V +P KG G I +S G + ++ + C L GD I + +
Sbjct: 12 LLVTIPLIKGPKGFGFAIADSPTGQKVKMIL--------DSQWCQGLQKGDIIKEIYHQN 63
Query: 264 L 264
+
Sbjct: 64 V 64
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 41.1 bits (95), Expect = 4e-04
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+ +L A + G+ G +I+ +NN + E+ V L
Sbjct: 27 VAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDL 70
Score = 39.5 bits (91), Expect = 0.001
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 208 VVPKAKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+V KG+ +G+ + G + +A + AA+ G L GDQI+ VN V
Sbjct: 4 LVKFRKGDSVGLRLA----GGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDF 55
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 38.1 bits (89), Expect = 4e-04
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 325 GGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
G+ G I+EIN Q+V + H ++V++L
Sbjct: 46 PGLCEGDLIVEINQQNVQNLSHTEVVDIL 74
Score = 34.7 bits (80), Expect = 0.008
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 11/61 (18%)
Query: 205 KEVVVPK-AKGEILGVVIVESGWGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVS 263
+ + K A+G G I +S G + ++ C L GD I+ +N +
Sbjct: 12 MTLTIVKGAQG--FGFTIADSPTGQRVKQIL--------DIQGCPGLCEGDLIVEINQQN 61
Query: 264 L 264
+
Sbjct: 62 V 62
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.001
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 139 HV-FESDEAQFIAQSIGQAFQVAYMEFLKANGIED--HSFVKEMDYQEVLNSQEIFGDEL 195
H+ FE+ E Q+ + I F+ A+++ ++D S + + + ++ S++ L
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 196 QMFAKKELQKEVVVPKAKGEIL 217
++F ++E +V K E+L
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVL 87
Score = 28.7 bits (63), Expect = 4.1
Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 30/92 (32%)
Query: 267 YMEFLKANGIEDHS-----------FVKEMDYQEVLNSQEIFGDELQMFAKKELQKEICS 315
+M+F G + FV D ++V + + +K+E+ I
Sbjct: 6 HMDF--ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDM------PKSILSKEEI-DHI-- 54
Query: 316 LLRGGIAERGGVRVGHRIIEI---NNQSVVAV 344
I + V R+ + +V
Sbjct: 55 -----IMSKDAVSGTLRLFWTLLSKQEEMVQK 81
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 35.9 bits (82), Expect = 0.005
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 207 VVVPKAKGEILGV-VIVESGWGSMLPTVVIANLAPAG-AAARCGQLNIGDQIIAVNGVSL 264
+ +P G V VES + TV + + + ++ GD+I+ +NG +
Sbjct: 19 ISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPV 78
Score = 32.5 bits (73), Expect = 0.055
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 314 CSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+ + R + G RI+EIN V + E++ + + +
Sbjct: 51 VNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQT 93
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 37.3 bits (87), Expect = 0.007
Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 21/129 (16%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLKA----------------NGI 276
++ + P +AA+ G + GD I ++NG + ++ +G
Sbjct: 288 AFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGK 346
Query: 277 EDHSFVK--EMDYQEVLNSQEIFGDELQMFAKKELQK--EICSLLRGGIAERGGVRVGHR 332
+ + ++ + +V +S G E + K + + ++ G A + G++ G
Sbjct: 347 QVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDV 406
Query: 333 IIEINNQSV 341
II N Q+V
Sbjct: 407 IIGANQQAV 415
Score = 30.8 bits (70), Expect = 0.71
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLKA 273
VV+ N+ AA+ G L GD II N ++ E K
Sbjct: 385 VVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVKNIAELRKV 424
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta
structure, phosphotyrosine binding domain; 2.20A {Homo
sapiens} PDB: 3d8e_A 3d8f_A
Length = 148
Score = 33.9 bits (77), Expect = 0.028
Identities = 22/147 (14%), Positives = 50/147 (34%), Gaps = 9/147 (6%)
Query: 31 FRLKFLGSVQVDEDD--PKCCKRRVKKVMVEEAAPEGETQPSTEVDLFISTEKIMVLNTD 88
F ++ LG V++ E++ P V + + + + + ++ L +
Sbjct: 5 FAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNNLHDPMSGGWGEGKDLLLQLEDE 64
Query: 89 LKEIM--MDHALRTISYIADIGDLVVLMARRRFVSQEADEPPKISRTPKMICHVFESDEA 146
+++ AL I I V + R ++ + T + CHVF +
Sbjct: 65 TLKLVEPQSQALLHAQPIISI--RVWGVGRDSGRERDFAYVARDKLTQMLKCHVFRCEAP 122
Query: 147 QFIAQSIGQAFQVAYMEFLKANGIEDH 173
A++I + + + H
Sbjct: 123 ---AKNIATSLHEICSKIMAELEHHHH 146
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 34.2 bits (79), Expect = 0.053
Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 24/132 (18%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLKA----------------NGI 276
++ + P +A+ G + GD I ++NG L ++ E NG
Sbjct: 265 AFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGK 323
Query: 277 EDHSFVK-----EMDYQEVLNSQEIFGDELQMFAKKELQK--EICSLLRGGIAERGGVRV 329
V + + + G L K+ K +I +++G A + G++
Sbjct: 324 PLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAGLQK 383
Query: 330 GHRIIEINNQSV 341
II +N V
Sbjct: 384 DDVIIGVNRDRV 395
Score = 31.1 bits (71), Expect = 0.60
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLKA 273
+ I + AA+ G L D II VN + + E K
Sbjct: 365 IKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSIAEMRKV 404
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 33.0 bits (74), Expect = 0.080
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLV 265
+ + + P G A+ L GD+II NG S +
Sbjct: 26 IFVTRVQPEGPAS--KLLQPGDKIIQANGYSFI 56
Score = 29.9 bits (66), Expect = 1.0
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATS 356
+ + G A ++ G +II+ N S + + H + V+LL T
Sbjct: 28 VTRVQPEGPAS-KLLQPGDKIIQANGYSFINIEHGQAVSLLKTF 70
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 30.2 bits (68), Expect = 0.22
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 234 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLKA 273
V+ N+ P AA+ G L GD+I+ V+G L ++ F+
Sbjct: 7 VLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQWVTFVML 45
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 31.9 bits (73), Expect = 0.30
Identities = 17/136 (12%), Positives = 32/136 (23%), Gaps = 28/136 (20%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLKA----------------NGI 276
+++ + P A G L GD I +N + + +
Sbjct: 284 ALVSQVNPNSPAELAG-LKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNK 342
Query: 277 EDHSFVK--EMDYQEVLNSQEIFG------DELQMFAKKELQKE---ICSLLRGGIAERG 325
++ E + + + R
Sbjct: 343 PLTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAGWRA 402
Query: 326 GVRVGHRIIEINNQSV 341
G+R G II N + V
Sbjct: 403 GIRPGDIIISANKKPV 418
Score = 30.7 bits (70), Expect = 0.68
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLKA 273
V + + A R G + GD II+ N +
Sbjct: 388 VQVVGASENSAGWRAG-IRPGDIIISANKKPVTDVKSLQTI 427
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 31.6 bits (71), Expect = 0.31
Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 16/104 (15%)
Query: 175 FVKEMDYQEVLNSQEIFGDELQMFAKKELQKEVVVPKAKGEILGVVIVESGWGSMLP--- 231
F+ ++ + + D L+ +K ++ + K V + WG
Sbjct: 40 FIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGV 99
Query: 232 -------------TVVIANLAPAGAAARCGQLNIGDQIIAVNGV 262
+ + AA G D II + V
Sbjct: 100 SIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTV 143
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.9 bits (69), Expect = 0.49
Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 34/129 (26%)
Query: 92 IMMDHALRTISYIADIGDLVVLMARRRFVS----QEADEPPK----ISRTPKMICHVFES 143
I ++++ D D + R VS + + K I+ P FE+
Sbjct: 120 IQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEP------FEN 173
Query: 144 DEAQFIAQSIGQAFQVAYMEFLKANGIEDHSFVKEMDYQEVLNSQEIFGDE------LQM 197
I A ++ E L + + + +D LN + F D +Q
Sbjct: 174 -----I------AIELPPNEILFSENNDMDNNNDGVDE---LNKKCTFWDAISKLYYVQF 219
Query: 198 FAKKELQKE 206
F K+ Q++
Sbjct: 220 FFKQAEQEQ 228
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 29.2 bits (66), Expect = 0.64
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLKA 273
V + ++ P AA G+L GD+I A++G + + +
Sbjct: 7 VYVMSVLPNMPAA--GRLEAGDRIAAIDGQPINTSEQIVSY 45
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 29.4 bits (66), Expect = 0.83
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLKA 273
V I ++ P A+ L G I ++NG+ + A
Sbjct: 27 VQIDSVVPGSPAS--KVLTPGLVIESINGMPTSNLTTYSAA 65
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 28.4 bits (64), Expect = 1.0
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLKA 273
V + ++ AA L+ GD I ++G + + EF+
Sbjct: 9 VYVMSVKDDVPAA--DVLHAGDLITEIDGNAFKSSQEFIDY 47
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 30.4 bits (67), Expect = 1.1
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 226 WGSMLPTVVIANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+ + + + N+ +A G L+ GD+IIA++ +
Sbjct: 491 YKASPQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQA 528
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 29.2 bits (66), Expect = 2.0
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 322 AERGGVRVGHRIIEINNQSVVAVPHEKIVNLL 353
AE+ G R G I+ ++ +V + + +LL
Sbjct: 112 AEKAGARAGDVIVTVDGTAVKGMSLYDVSDLL 143
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 27.7 bits (62), Expect = 2.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSV 341
I ++ G A R G+R G I+ I Q V
Sbjct: 39 IHKVILGSPAHRAGLRPGDVILAIGEQMV 67
>2gqc_A Rhomboid intramembrane protease; alpha-beta domain, hydrolase; NMR
{Pseudomonas aeruginosa}
Length = 70
Score = 26.9 bits (59), Expect = 2.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 317 LRGGIAERGGVRVGHRIIEINNQSVVAVPHEKIV 350
L G + + V HR+ E + Q V+ VP E++
Sbjct: 15 LAGFVGLLRRLNVPHRVSEESGQQVLWVPDERLA 48
>1xtm_B Hypothetical superoxide dismutase-like protein YO; SOD, Cu-Zn SOD,
SOD-like, superoxide dismutase mutants, STRU genomics,
unknown function; 1.60A {Bacillus subtilis} PDB: 1xtl_B
1s4i_B 1u3n_A
Length = 175
Score = 28.1 bits (63), Expect = 3.3
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 194 ELQMFAKKELQKEVVVPKAKGEILGVV-IVESGWGSMLPTVVIANLAP 240
E ++ V + +G+ +G + I ES + + +L P
Sbjct: 11 EKKVVETSAFGHHVQLVNREGKAVGFIEIKESDDEGLDIHISANSLRP 58
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance,
cell WALL, transmembrane; 2.4A {Streptococcus
pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1
PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B*
2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A*
2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Length = 702
Score = 28.9 bits (65), Expect = 3.4
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 187 SQEIFGDELQMFAKKELQKEVVVPKAKGEIL---GVVIVES 224
+ FG +L AKK Q VP +G I GV I E
Sbjct: 2 TGTRFGTDLAKEAKKVHQTTRTVPAKRGTIYDRNGVPIAED 42
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 28.4 bits (64), Expect = 3.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSV 341
I ++ G A R G+R G I+ I Q V
Sbjct: 260 IHKVILGSPAHRAGLRPGDVILAIGEQMV 288
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 26.8 bits (59), Expect = 3.7
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 234 VIANLAPAGAAARCGQLNIGDQIIAVNGVSLVAYMEFLKA 273
V+ +A AA + G ++ AV+G+ +
Sbjct: 5 VVGEIAANSIAAEAQ-IAPGTELKAVDGIETPDWDAVRLQ 43
Score = 26.1 bits (57), Expect = 6.9
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 319 GGIAERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSVGE 359
IA + G + ++ + + L +G+
Sbjct: 12 NSIAAEAQIAPGTELKAVDGIETPD--WDAVRLQLVDKIGD 50
>1eso_A SOD, Cu, Zn superoxide dismutase; oxidoreductase, monomeric
superoxide dismutase, copper enzymes, enzyme evolution,
X- RAY; 2.00A {Escherichia coli} SCOP: b.1.8.1 PDB:
2k4w_A
Length = 154
Score = 27.6 bits (62), Expect = 3.7
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 199 AKKELQKEVVVPKAKGEILGVVIVESGWGSMLPTVVIANLAP 240
A ++++ +V + G+ +G V + + + + L P
Sbjct: 1 ASEKVEMNLVTSQGVGQSIGSVTITETDKGLEFSPDLKALPP 42
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 28.3 bits (64), Expect = 3.7
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSV 341
+ + G A G++V II ++N+
Sbjct: 248 VNEVSPDGPAANAGIQVNDLIISVDNKPA 276
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 28.4 bits (64), Expect = 4.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSV 341
I ++ AE GG++ II IN QSV
Sbjct: 258 IIEVIPDTPAEAGGLKENDVIISINGQSV 286
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 26.9 bits (60), Expect = 4.3
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 313 ICSLLRGGIAERGGVRVGHRIIEINNQSV 341
+ + ++RGG++ G I+++N + +
Sbjct: 39 VQEVAPNSPSQRGGIQDGDIIVKVNGRPL 67
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 26.5 bits (59), Expect = 4.8
Identities = 7/29 (24%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNG 261
+ +++ A G++ +GD+II+ +G
Sbjct: 3 IYASSVVENMPAK--GKIEVGDKIISADG 29
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 27.8 bits (62), Expect = 5.7
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 322 AERGGVRVGHRIIEINNQSVVAVPHEKIVNLLATSV 357
AE G++ GH I+ +N + +++ +
Sbjct: 103 AEEAGLQRGHWIMMMNGDYITKKVESELLQGSTRQL 138
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 27.8 bits (61), Expect = 7.1
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 235 IANLAPAGAAARCGQLNIGDQIIAVNGVSL 264
+N G G I ++G ++
Sbjct: 760 YSNEGEKSPIFEYGIDPTGYLIEDIDGETV 789
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 27.2 bits (61), Expect = 7.9
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 233 VVIANLAPAGAAARCGQLNIGDQIIAVNG 261
++ + P +A+ G + GD I ++NG
Sbjct: 265 AFVSEVLPGSGSAKAG-VKAGDIITSLNG 292
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 27.2 bits (61), Expect = 8.2
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 18/72 (25%)
Query: 208 VVP--KAKGEI----LGVVIVESGWGSMLPT--VVIANLAPAGAAARCG----------Q 249
+V G++ LG+ L V++ + P+G A + G +
Sbjct: 220 IVDQLVRFGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYGR 279
Query: 250 LNIGDQIIAVNG 261
L +GD I +VNG
Sbjct: 280 LVLGDIITSVNG 291
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.384
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,632,663
Number of extensions: 361725
Number of successful extensions: 1326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1214
Number of HSP's successfully gapped: 384
Length of query: 359
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 264
Effective length of database: 4,049,298
Effective search space: 1069014672
Effective search space used: 1069014672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)