BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5023
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 6 YIFWIGDLNFRLNNPETYTQDIITDRIRDGQFNDLLEQDQLRAVMQSGEAFSEFNETTPT 65
Y+ W GD N+R+ + T + + I G+ + L E DQL M +G+ F F+E T
Sbjct: 201 YVVWFGDFNYRI----SLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPIT 256
Query: 66 FQPTFKYQFNSHNYD 80
F PT+K+ + YD
Sbjct: 257 FPPTYKFDIGTDIYD 271
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 7 IFWIGDLNFRLNNPETYTQDIITDRIRDGQFNDLLEQDQLRAVMQSGEAFSEFNETTPTF 66
I W+GDLN+R+ E + + I + F L DQL+ + + F F E TF
Sbjct: 182 ILWLGDLNYRI---EELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTF 238
Query: 67 QPTFKYQFNSHNYD 80
QPT+KY S ++D
Sbjct: 239 QPTYKYDTGSDDWD 252
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 7 IFWIGDLNFRLNNPETYTQDIITDRIRDGQFNDLLEQDQLRAVMQSGEAFSEFNETTPTF 66
I W+GDLN+R+ E + + I + F L DQL+ + + F F E TF
Sbjct: 185 ILWLGDLNYRI---EELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTF 241
Query: 67 QPTFKYQFNSHNYDN 81
QPT+KY S ++D
Sbjct: 242 QPTYKYDTGSDDWDT 256
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin
pdb|1Y21|A Chain A, Crystal Structure Of Cimex Nitrophorin No Complex
pdb|1SI6|X Chain X, Crystal Structure Of Cimex Nitrophorin Complex With Co
pdb|1YJH|A Chain A, Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
pdb|2IMQ|X Chain X, Crystal Structure Of Ferrous Cimex Nitrophorin
Length = 282
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 2 DKLSYIFWIGDLNFRLNNPETYTQDIITDRIRDGQFNDLLEQDQLRAVMQSGEAFSEFNE 61
D ++FWIGDLN R+ T+ + ++ DG L+ DQL+ + + F + E
Sbjct: 161 DPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDG----LMAFDQLKKAKEQ-KLFDGWTE 215
Query: 62 TTPTFQPTFKYQFNSHNYD 80
TF+PT+K++ N+ YD
Sbjct: 216 PQVTFKPTYKFKPNTDEYD 234
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 3 KLSYIFWIGDLNFRLNNPETYT-----QDIITDRIRDGQFNDLLEQDQLRAVMQSGEAFS 57
+ +FW GD NFRL+ T Q ++ D LL+ DQL M+ G F
Sbjct: 195 RFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVD------VPALLQHDQLIREMRKGSIFK 248
Query: 58 EFNETTPTFQPTFKYQFNSHNYDN 81
F E F P++K+ YD+
Sbjct: 249 GFQEPDIHFLPSYKFDIGKDTYDS 272
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 3 KLSYIFWIGDLNFRLNNPETYTQDI--ITDRIRDGQFNDLLEQDQLRAVMQSGEAFSEFN 60
+ +++FW GDLN+RL+ DI I + I +F LL DQL + + F F+
Sbjct: 182 RFTHLFWFGDLNYRLD------MDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFS 235
Query: 61 ETTPTFQPTFKYQFNSHN 78
E +F PT++Y+ S +
Sbjct: 236 EEEISFPPTYRYERGSRD 253
>pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca
Sexta Apolipophorin-Iii
Length = 166
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 53 GEAFSEFNETTPTFQPTFKYQFNS 76
G AF E + FQ TF QFNS
Sbjct: 6 GNAFEEMEKHAKEFQKTFSEQFNS 29
>pdb|2W0C|L Chain L, X-Ray Structure Of The Entire Lipid-Containing
Bacteriophage Pm2
Length = 335
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 8 FWIGDLNFRLNNPETYTQDIITDRI--RDGQFNDLLEQDQLR 47
+W+GDL++ T ++D+ + +I RDG +LL +D R
Sbjct: 74 YWVGDLDYSFQEQTTKSRDVNSFQIPLRDG-VRELLPEDASR 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,763,521
Number of Sequences: 62578
Number of extensions: 98983
Number of successful extensions: 173
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 8
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)