Query psy5023
Match_columns 82
No_of_seqs 125 out of 882
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 23:52:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 9.3E-34 3.2E-38 206.4 9.1 78 1-81 179-256 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 6.9E-32 2.4E-36 196.7 8.7 74 3-80 182-256 (316)
3 2xsw_A 72 kDa inositol polypho 100.0 1.7E-30 6E-35 191.3 8.2 75 3-81 195-272 (357)
4 1i9z_A Synaptojanin, phosphati 100.0 7.6E-29 2.6E-33 181.8 8.9 77 1-81 196-272 (347)
5 2imq_X Salivary nitrophorin; f 99.9 4.5E-27 1.5E-31 166.8 8.6 76 2-82 161-236 (282)
6 3pt1_A UPF0364 protein YMR027W 87.1 0.068 2.3E-06 40.6 -1.3 15 2-16 375-389 (471)
7 4f1h_A Tyrosyl-DNA phosphodies 77.8 0.65 2.2E-05 29.1 0.8 13 4-16 144-156 (250)
8 1ako_A Exonuclease III; AP-end 74.2 1 3.4E-05 29.3 0.9 15 4-18 143-157 (268)
9 3teb_A Endonuclease/exonucleas 74.1 1.3 4.5E-05 28.7 1.5 14 4-17 168-181 (266)
10 4gz1_A Tyrosyl-DNA phosphodies 72.6 1.5 5.1E-05 27.9 1.5 13 4-16 150-162 (256)
11 1vyb_A ORF2 contains A reverse 70.8 1.2 4.2E-05 28.3 0.8 14 5-18 138-151 (238)
12 2jc4_A Exodeoxyribonuclease II 70.8 1.2 4.2E-05 28.7 0.8 15 4-18 138-152 (256)
13 2jc5_A Exodeoxyribonuclease; h 70.2 1.3 4.4E-05 28.6 0.8 15 4-18 141-155 (259)
14 3l1w_A Uncharacterized protein 69.3 1.4 4.7E-05 28.7 0.8 12 6-17 160-171 (257)
15 3g6s_A Putative endonuclease/e 69.1 1.4 4.8E-05 28.9 0.8 14 5-18 165-178 (267)
16 1zwx_A SMCL, sphingomyelinase- 68.9 2 6.9E-05 28.6 1.5 15 4-18 187-201 (301)
17 2a40_B Deoxyribonuclease-1; WA 68.8 1.4 4.9E-05 29.2 0.8 14 5-18 161-174 (260)
18 2voa_A AF_EXO, XTHA, exodeoxyr 67.6 1.6 5.4E-05 28.3 0.8 13 4-16 138-150 (257)
19 2o3h_A DNA-(apurinic or apyrim 67.3 1.6 5.5E-05 28.9 0.8 13 5-17 170-182 (285)
20 2ddr_A Sphingomyelin phosphodi 65.3 2.2 7.4E-05 28.5 1.1 13 5-17 188-200 (306)
21 3mpr_A Putative endonuclease/e 64.7 1.9 6.6E-05 29.1 0.8 14 4-17 170-183 (298)
22 3g91_A MTH0212, exodeoxyribonu 64.1 2 6.8E-05 28.3 0.8 13 5-17 144-156 (265)
23 4fva_A 5'-tyrosyl-DNA phosphod 64.0 3 0.0001 26.5 1.6 15 4-18 157-171 (256)
24 1hd7_A DNA-(apurinic or apyrim 62.7 2.2 7.6E-05 29.2 0.8 13 5-17 203-215 (318)
25 3i41_A Beta-hemolysin; beta to 61.5 2.7 9.4E-05 28.9 1.1 15 4-18 206-220 (317)
26 1wdu_A TRAS1 ORF2P; four-layer 61.3 2.4 8.3E-05 27.6 0.8 12 5-16 147-158 (245)
27 2j63_A AP-endonuclease; base e 52.3 5.3 0.00018 29.8 1.4 12 4-15 347-358 (467)
28 2ei9_A Non-LTR retrotransposon 52.0 4.3 0.00015 27.1 0.8 12 5-16 120-131 (240)
29 3ngq_A CCR4-NOT transcription 48.4 5.2 0.00018 29.3 0.8 23 6-35 247-269 (398)
30 4gew_A 5'-tyrosyl-DNA phosphod 42.8 9.3 0.00032 27.0 1.4 15 4-18 263-277 (362)
31 2ffj_A Conserved hypothetical 41.4 2.4 8.3E-05 30.0 -1.9 17 2-18 248-264 (300)
32 4b8c_D Glucose-repressible alc 35.8 7.7 0.00026 30.0 0.0 13 6-18 597-609 (727)
33 1sr4_B CDT B, cytolethal diste 33.7 14 0.00049 25.7 1.1 10 5-14 170-179 (261)
34 2lp1_A C99; alzheimer'S D memb 39.6 8.9 0.0003 24.1 0.0 8 67-74 89-96 (122)
35 1xm7_A Hypothetical protein AQ 27.7 30 0.001 21.7 1.8 15 2-16 42-56 (195)
36 1uf3_A Hypothetical protein TT 27.7 30 0.001 21.6 1.8 12 3-14 32-43 (228)
37 2f1n_A CDT B, cytolethal diste 26.9 19 0.00065 25.3 0.8 13 6-18 179-191 (262)
38 2g8l_A 287AA long hypothetical 26.6 4.6 0.00016 28.6 -2.5 17 2-18 244-260 (299)
39 2yvt_A Hypothetical protein AQ 24.3 36 0.0012 21.8 1.8 12 3-14 32-43 (260)
40 3ib7_A ICC protein; metallopho 23.3 37 0.0013 22.6 1.7 12 3-14 66-77 (330)
41 2ysz_A Amyloid beta A4 precurs 22.6 23 0.0008 23.5 0.5 8 67-74 174-181 (185)
42 3d03_A Phosphohydrolase; glyce 21.9 43 0.0015 21.5 1.8 12 3-14 41-52 (274)
43 2nxf_A Putative dimetal phosph 21.8 41 0.0014 21.9 1.7 13 3-15 51-63 (322)
44 3rl5_A Metallophosphoesterase 21.4 45 0.0015 23.4 1.9 13 2-14 78-90 (296)
45 1t0b_A THUA-like protein; treh 21.2 33 0.0011 23.3 1.1 15 2-16 66-80 (252)
46 1s3l_A Hypothetical protein MJ 20.9 46 0.0016 21.2 1.7 11 3-13 52-62 (190)
47 2a22_A Vacuolar protein sortin 20.2 47 0.0016 21.3 1.7 11 3-13 55-65 (215)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=9.3e-34 Score=206.35 Aligned_cols=78 Identities=32% Similarity=0.646 Sum_probs=74.6
Q ss_pred CCCccEEEEeCcCCCccCCCCCCCHHHHHHHHhccChHHHHHhHHHHHHHhhCcccCCcccCCCCCCCCCCCcCCCCCcc
Q psy5023 1 MDKLSYIFWIGDLNFRLNNPETYTQDIITDRIRDGQFNDLLEQDQLRAVMQSGEAFSEFNETTPTFQPTFKYQFNSHNYD 80 (82)
Q Consensus 1 ~~~~d~vfw~GDlNyRi~~~~~l~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~s~~Yd 80 (82)
|.+||+|||+|||||||+. ++.++|+++|++++|..|+++|||+++++++.+|.||+|++|+|||||||++||+.||
T Consensus 179 i~~~d~vfw~GDLNyRi~~---~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s~~yd 255 (313)
T 3mtc_A 179 ISNHDVILWLGDLNYRIEE---LDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWD 255 (313)
T ss_dssp TTSSSEEEEEEECCCCBCS---SCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTSSSBC
T ss_pred ccCCceEEEeccccccccC---CCHHHHHHHHhcCCHHHHHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCCcccc
Confidence 4689999999999999984 5889999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q psy5023 81 N 81 (82)
Q Consensus 81 t 81 (82)
|
T Consensus 256 t 256 (313)
T 3mtc_A 256 T 256 (313)
T ss_dssp C
T ss_pred c
Confidence 7
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=99.97 E-value=6.9e-32 Score=196.67 Aligned_cols=74 Identities=34% Similarity=0.666 Sum_probs=70.4
Q ss_pred CccEEEEeCcCCCccCCCCCCCHHHHHHHHhccChHHHHHhHHHHHHHhhCcccCCcccCCCCCCCCCCCcCCCC-Ccc
Q psy5023 3 KLSYIFWIGDLNFRLNNPETYTQDIITDRIRDGQFNDLLEQDQLRAVMQSGEAFSEFNETTPTFQPTFKYQFNSH-NYD 80 (82)
Q Consensus 3 ~~d~vfw~GDlNyRi~~~~~l~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~s~-~Yd 80 (82)
++|||||+|||||||+ ++.++|+++|++++|..||++|||+++|+++++|.||+|++|+|||||||++|++ .|+
T Consensus 182 ~~d~vfw~GDLNyRi~----~~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E~~i~F~PTYKy~~~s~~~y~ 256 (316)
T 4a9c_A 182 RFTHLFWFGDLNYRLD----MDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYA 256 (316)
T ss_dssp TSSEEEEEEECCCCBS----SCHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTCSSCBC
T ss_pred cCCeEEEcCCccCCcC----CCHHHHHHHHhcccHHHHhccChHHHHHhcCCcccccccCCcccCCCccccCCCccccc
Confidence 5899999999999999 5889999999999999999999999999999999999999999999999999995 575
No 3
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.96 E-value=1.7e-30 Score=191.29 Aligned_cols=75 Identities=31% Similarity=0.643 Sum_probs=70.5
Q ss_pred CccEEEEeCcCCCccCCCCCCCHHHHHHHHh---ccChHHHHHhHHHHHHHhhCcccCCcccCCCCCCCCCCCcCCCCCc
Q psy5023 3 KLSYIFWIGDLNFRLNNPETYTQDIITDRIR---DGQFNDLLEQDQLRAVMQSGEAFSEFNETTPTFQPTFKYQFNSHNY 79 (82)
Q Consensus 3 ~~d~vfw~GDlNyRi~~~~~l~~~~v~~~i~---~~~~~~Ll~~DQL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~s~~Y 79 (82)
++|+|||+|||||||+ ++.+++.++|+ .++|..|+++|||+.+++++.+|.||+|++|+|||||||+.+++.|
T Consensus 195 ~~d~vfw~GDlNyRi~----~~~~~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~~t~~Y 270 (357)
T 2xsw_A 195 RFDEVFWFGDFNFRLS----GGRTVVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTY 270 (357)
T ss_dssp SSSEEEEEEECCCCBS----SCHHHHHHHHC---CCCHHHHHTTBHHHHHHHHTSSSTTCBCCCCCSCCCBCBCTTSSSB
T ss_pred ccceEEEecccCcccc----cchHHHHHHHhhcchhhHHHHHhcChhHHHHhccccccCccccCCCCCCCccccCCCccc
Confidence 6899999999999999 46778888886 5799999999999999999999999999999999999999999999
Q ss_pred cC
Q psy5023 80 DN 81 (82)
Q Consensus 80 dt 81 (82)
||
T Consensus 271 dt 272 (357)
T 2xsw_A 271 DS 272 (357)
T ss_dssp CC
T ss_pred cc
Confidence 97
No 4
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.95 E-value=7.6e-29 Score=181.80 Aligned_cols=77 Identities=34% Similarity=0.675 Sum_probs=73.9
Q ss_pred CCCccEEEEeCcCCCccCCCCCCCHHHHHHHHhccChHHHHHhHHHHHHHhhCcccCCcccCCCCCCCCCCCcCCCCCcc
Q psy5023 1 MDKLSYIFWIGDLNFRLNNPETYTQDIITDRIRDGQFNDLLEQDQLRAVMQSGEAFSEFNETTPTFQPTFKYQFNSHNYD 80 (82)
Q Consensus 1 ~~~~d~vfw~GDlNyRi~~~~~l~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~s~~Yd 80 (82)
|.+||+|||+||||||++ ++.+.+.++|.+++|..|+++|||.++++++.+|.+|+|++|+|+|||||+.+++.||
T Consensus 196 i~~~d~v~~~GDlNyRi~----~~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~~~yd 271 (347)
T 1i9z_A 196 IFNHDYVVWFGDFNYRIS----LTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYD 271 (347)
T ss_dssp TTSSSEEEEEEECCCCBS----SCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBC
T ss_pred cccCccEEEecccccccC----CCHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCCcccc
Confidence 468999999999999999 5889999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy5023 81 N 81 (82)
Q Consensus 81 t 81 (82)
|
T Consensus 272 ~ 272 (347)
T 1i9z_A 272 T 272 (347)
T ss_dssp C
T ss_pred c
Confidence 6
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.94 E-value=4.5e-27 Score=166.76 Aligned_cols=76 Identities=30% Similarity=0.625 Sum_probs=71.8
Q ss_pred CCccEEEEeCcCCCccCCCCCCCHHHHHHHHhccChHHHHHhHHHHHHHhhCcccCCcccCCCCCCCCCCCcCCCCCccC
Q psy5023 2 DKLSYIFWIGDLNFRLNNPETYTQDIITDRIRDGQFNDLLEQDQLRAVMQSGEAFSEFNETTPTFQPTFKYQFNSHNYDN 81 (82)
Q Consensus 2 ~~~d~vfw~GDlNyRi~~~~~l~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~s~~Ydt 81 (82)
.++++|||+||||||++ .+.+.+.++|+++++..|+++|||..+++ +.+|.+|+|++|+|+|||||+.+++.||+
T Consensus 161 ~~~~~vi~~GDfN~r~~----~~~~~~~~~i~~~~~~~l~~~DqL~~~~~-~~~f~~f~e~~i~f~PTYk~~~~~~~y~~ 235 (282)
T 2imq_X 161 DPSDFLFWIGDLNVRVE----TNATHAKSLVDQNNIDGLMAFDQLKKAKE-QKLFDGWTEPQVTFKPTYKFKPNTDEYDL 235 (282)
T ss_dssp SCCSEEEEEEECSCCBC----SCHHHHHHHHHTTCHHHHHTTBTHHHHHH-TTSSTTCBCCCCCSCCCBCBCTTSSCBCT
T ss_pred CccceEEEecccccccC----CCHHHHHHHHhhccHHHHhhhhHHHHhhc-cccccccccCCcCCCCCccccCCCccccc
Confidence 46899999999999999 47889999999999999999999999999 99999999999999999999999999987
Q ss_pred C
Q psy5023 82 K 82 (82)
Q Consensus 82 k 82 (82)
+
T Consensus 236 ~ 236 (282)
T 2imq_X 236 S 236 (282)
T ss_dssp T
T ss_pred c
Confidence 4
No 6
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=87.05 E-value=0.068 Score=40.64 Aligned_cols=15 Identities=40% Similarity=0.831 Sum_probs=13.8
Q ss_pred CCccEEEEeCcCCCc
Q psy5023 2 DKLSYIFWIGDLNFR 16 (82)
Q Consensus 2 ~~~d~vfw~GDlNyR 16 (82)
.+++.||+=||||||
T Consensus 375 ~~S~LVIFKGDLNYR 389 (471)
T 3pt1_A 375 QKSNLVIFKGDLNYR 389 (471)
T ss_dssp TTCSEEEEEHHHHHH
T ss_pred hhCcEEEEecchhhh
Confidence 578999999999998
No 7
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=77.79 E-value=0.65 Score=29.05 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=10.0
Q ss_pred ccEEEEeCcCCCc
Q psy5023 4 LSYIFWIGDLNFR 16 (82)
Q Consensus 4 ~d~vfw~GDlNyR 16 (82)
..-|+++||||-.
T Consensus 144 ~~pvIl~GDfN~~ 156 (250)
T 4f1h_A 144 DAIVIFAGDTNLR 156 (250)
T ss_dssp TEEEEEEEECCCC
T ss_pred CCCEEEEEecCCC
Confidence 3468999999953
No 8
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=74.16 E-value=1 Score=29.31 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=11.9
Q ss_pred ccEEEEeCcCCCccC
Q psy5023 4 LSYIFWIGDLNFRLN 18 (82)
Q Consensus 4 ~d~vfw~GDlNyRi~ 18 (82)
...++++||||-..+
T Consensus 143 ~~~~Il~GDFN~~~~ 157 (268)
T 1ako_A 143 DNPVLIMGDMNISPT 157 (268)
T ss_dssp TSCEEEEEECCCCCS
T ss_pred CCCEEEEeECCCCCc
Confidence 467999999997544
No 9
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=74.11 E-value=1.3 Score=28.72 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=11.7
Q ss_pred ccEEEEeCcCCCcc
Q psy5023 4 LSYIFWIGDLNFRL 17 (82)
Q Consensus 4 ~d~vfw~GDlNyRi 17 (82)
..-++++||||-..
T Consensus 168 ~~~~il~GDfN~~~ 181 (266)
T 3teb_A 168 SNLKILMGDFNTDA 181 (266)
T ss_dssp CCEEEEEEECCCCT
T ss_pred CCcEEEEeECCCCC
Confidence 45789999999876
No 10
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=72.63 E-value=1.5 Score=27.90 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=10.4
Q ss_pred ccEEEEeCcCCCc
Q psy5023 4 LSYIFWIGDLNFR 16 (82)
Q Consensus 4 ~d~vfw~GDlNyR 16 (82)
..-|+++||||-+
T Consensus 150 ~~pvIl~GDfN~~ 162 (256)
T 4gz1_A 150 STTVIFAGDTNLR 162 (256)
T ss_dssp TSEEEEEEECCCC
T ss_pred cceEEEeCccCCC
Confidence 4568999999964
No 11
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=70.83 E-value=1.2 Score=28.25 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=10.9
Q ss_pred cEEEEeCcCCCccC
Q psy5023 5 SYIFWIGDLNFRLN 18 (82)
Q Consensus 5 d~vfw~GDlNyRi~ 18 (82)
..++++||||-...
T Consensus 138 ~~~Il~GDFN~~~~ 151 (238)
T 1vyb_A 138 SHTLIMGDFNTPLS 151 (238)
T ss_dssp TTEEEEEECSSCSS
T ss_pred CCEEEEccCCCCCC
Confidence 46899999997543
No 12
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=70.77 E-value=1.2 Score=28.68 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=11.9
Q ss_pred ccEEEEeCcCCCccC
Q psy5023 4 LSYIFWIGDLNFRLN 18 (82)
Q Consensus 4 ~d~vfw~GDlNyRi~ 18 (82)
..-++++||||-...
T Consensus 138 ~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 138 HGKLVLLGDFNIAPA 152 (256)
T ss_dssp CSSEEEEEECCCCCS
T ss_pred CCCEEEEeECCCCCc
Confidence 456899999997654
No 13
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=70.19 E-value=1.3 Score=28.63 Aligned_cols=15 Identities=27% Similarity=0.149 Sum_probs=12.1
Q ss_pred ccEEEEeCcCCCccC
Q psy5023 4 LSYIFWIGDLNFRLN 18 (82)
Q Consensus 4 ~d~vfw~GDlNyRi~ 18 (82)
..-++++||||-..+
T Consensus 141 ~~~~Il~GDFN~~~~ 155 (259)
T 2jc5_A 141 GRDIVVCGDWNIAHQ 155 (259)
T ss_dssp CSEEEEEEECCCCCS
T ss_pred CCCEEEEeeCCCCCc
Confidence 457999999998654
No 14
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=69.27 E-value=1.4 Score=28.73 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=9.8
Q ss_pred EEEEeCcCCCcc
Q psy5023 6 YIFWIGDLNFRL 17 (82)
Q Consensus 6 ~vfw~GDlNyRi 17 (82)
-++++||||-.-
T Consensus 160 pvil~GDfN~~~ 171 (257)
T 3l1w_A 160 PTLLMGDFNAES 171 (257)
T ss_dssp CEEEEEECCCCT
T ss_pred CEEEEeeCCCCC
Confidence 689999999643
No 15
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=69.09 E-value=1.4 Score=28.91 Aligned_cols=14 Identities=21% Similarity=0.133 Sum_probs=10.5
Q ss_pred cEEEEeCcCCCccC
Q psy5023 5 SYIFWIGDLNFRLN 18 (82)
Q Consensus 5 d~vfw~GDlNyRi~ 18 (82)
.-++++||||-.-.
T Consensus 165 ~pvIl~GDfN~~~~ 178 (267)
T 3g6s_A 165 RPAVVTGDFNVTDA 178 (267)
T ss_dssp SCEEEEEECSSCTT
T ss_pred CCEEEEeECCCCCC
Confidence 45899999996433
No 16
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=68.90 E-value=2 Score=28.60 Aligned_cols=15 Identities=40% Similarity=0.448 Sum_probs=12.2
Q ss_pred ccEEEEeCcCCCccC
Q psy5023 4 LSYIFWIGDLNFRLN 18 (82)
Q Consensus 4 ~d~vfw~GDlNyRi~ 18 (82)
..-++++||||-.-.
T Consensus 187 ~~pvIl~GDfN~~~~ 201 (301)
T 1zwx_A 187 DEIIFIGGDLNVNYG 201 (301)
T ss_dssp TSEEEEEEECCCCTT
T ss_pred CCeEEEEeeCCCCCC
Confidence 357999999997665
No 17
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=68.80 E-value=1.4 Score=29.17 Aligned_cols=14 Identities=21% Similarity=0.441 Sum_probs=11.1
Q ss_pred cEEEEeCcCCCccC
Q psy5023 5 SYIFWIGDLNFRLN 18 (82)
Q Consensus 5 d~vfw~GDlNyRi~ 18 (82)
.-++++||||=...
T Consensus 161 ~~vil~GDfN~~~~ 174 (260)
T 2a40_B 161 NDVMLMGDFNADCS 174 (260)
T ss_dssp CCEEEEEECCCSTT
T ss_pred CCEEEEecCCCCCc
Confidence 46899999997544
No 18
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=67.61 E-value=1.6 Score=28.29 Aligned_cols=13 Identities=38% Similarity=0.894 Sum_probs=10.4
Q ss_pred ccEEEEeCcCCCc
Q psy5023 4 LSYIFWIGDLNFR 16 (82)
Q Consensus 4 ~d~vfw~GDlNyR 16 (82)
..-++++||||-.
T Consensus 138 ~~p~Il~GDFN~~ 150 (257)
T 2voa_A 138 RSFAVWCGDMNVA 150 (257)
T ss_dssp TSCEEEEEECSCC
T ss_pred CCCEEEEeeCCCC
Confidence 4568999999954
No 19
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=67.34 E-value=1.6 Score=28.92 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=10.6
Q ss_pred cEEEEeCcCCCcc
Q psy5023 5 SYIFWIGDLNFRL 17 (82)
Q Consensus 5 d~vfw~GDlNyRi 17 (82)
.-++++||||-..
T Consensus 170 ~p~Il~GDFN~~~ 182 (285)
T 2o3h_A 170 KPLVLCGDLNVAH 182 (285)
T ss_dssp SCEEEEEECSCCC
T ss_pred CCEEEEEECCCCC
Confidence 5689999999654
No 20
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=65.31 E-value=2.2 Score=28.46 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.2
Q ss_pred cEEEEeCcCCCcc
Q psy5023 5 SYIFWIGDLNFRL 17 (82)
Q Consensus 5 d~vfw~GDlNyRi 17 (82)
.-++++||||-..
T Consensus 188 ~pvil~GDfN~~~ 200 (306)
T 2ddr_A 188 EYVLIGGDMNVNK 200 (306)
T ss_dssp SCEEEEEECCCCC
T ss_pred CEEEEEeeCCCCc
Confidence 5789999999876
No 21
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=64.73 E-value=1.9 Score=29.10 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=10.5
Q ss_pred ccEEEEeCcCCCcc
Q psy5023 4 LSYIFWIGDLNFRL 17 (82)
Q Consensus 4 ~d~vfw~GDlNyRi 17 (82)
..-++++||||-.-
T Consensus 170 ~~pvIl~GDfN~~~ 183 (298)
T 3mpr_A 170 NLPAILTGDFNVDQ 183 (298)
T ss_dssp CCCEEEEEECSSCT
T ss_pred CCcEEEEEeCCCCC
Confidence 34689999999543
No 22
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=64.14 E-value=2 Score=28.26 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=10.4
Q ss_pred cEEEEeCcCCCcc
Q psy5023 5 SYIFWIGDLNFRL 17 (82)
Q Consensus 5 d~vfw~GDlNyRi 17 (82)
..++++||||--.
T Consensus 144 ~~~ii~GDfN~~~ 156 (265)
T 3g91_A 144 RNVIICGDFNTAH 156 (265)
T ss_dssp CCEEEEEECCCCC
T ss_pred CCEEEECccccCC
Confidence 5689999999544
No 23
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=63.96 E-value=3 Score=26.46 Aligned_cols=15 Identities=40% Similarity=0.636 Sum_probs=11.8
Q ss_pred ccEEEEeCcCCCccC
Q psy5023 4 LSYIFWIGDLNFRLN 18 (82)
Q Consensus 4 ~d~vfw~GDlNyRi~ 18 (82)
...|+++||||-+-.
T Consensus 157 ~~~vIl~GDfN~~~~ 171 (256)
T 4fva_A 157 GALVFFGGDLNLRDE 171 (256)
T ss_dssp TCEEEEEEECCCCGG
T ss_pred CCcEEEeccCCCCcc
Confidence 457999999997654
No 24
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=62.68 E-value=2.2 Score=29.20 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=10.5
Q ss_pred cEEEEeCcCCCcc
Q psy5023 5 SYIFWIGDLNFRL 17 (82)
Q Consensus 5 d~vfw~GDlNyRi 17 (82)
.-++++||||-..
T Consensus 203 ~pvIl~GDFN~~~ 215 (318)
T 1hd7_A 203 KPLVLCGDLNVAH 215 (318)
T ss_dssp SCEEEEEECSCCC
T ss_pred CCEEEEeeCCCCC
Confidence 4689999999654
No 25
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=61.54 E-value=2.7 Score=28.87 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=11.9
Q ss_pred ccEEEEeCcCCCccC
Q psy5023 4 LSYIFWIGDLNFRLN 18 (82)
Q Consensus 4 ~d~vfw~GDlNyRi~ 18 (82)
..-|+++||||-.-.
T Consensus 206 ~~pvIl~GDfN~~~~ 220 (317)
T 3i41_A 206 DETVYIGGDLNVNKG 220 (317)
T ss_dssp TSCEEEEEECCCCTT
T ss_pred CCeEEEEeECCCCCC
Confidence 346899999997765
No 26
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=61.30 E-value=2.4 Score=27.57 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=9.8
Q ss_pred cEEEEeCcCCCc
Q psy5023 5 SYIFWIGDLNFR 16 (82)
Q Consensus 5 d~vfw~GDlNyR 16 (82)
..++++||||=.
T Consensus 147 ~~~Ii~GDfN~~ 158 (245)
T 1wdu_A 147 KRLIFGGDANAK 158 (245)
T ss_dssp SSEEEEEECCCC
T ss_pred CcEEEEeccccC
Confidence 468999999954
No 27
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=52.29 E-value=5.3 Score=29.77 Aligned_cols=12 Identities=42% Similarity=0.780 Sum_probs=10.2
Q ss_pred ccEEEEeCcCCC
Q psy5023 4 LSYIFWIGDLNF 15 (82)
Q Consensus 4 ~d~vfw~GDlNy 15 (82)
..-++++||||=
T Consensus 347 ~~pvIL~GDFN~ 358 (467)
T 2j63_A 347 PHGFIWAGDLNV 358 (467)
T ss_dssp SCEEEEEEECCC
T ss_pred CCcEEEeccccC
Confidence 367999999994
No 28
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=52.01 E-value=4.3 Score=27.05 Aligned_cols=12 Identities=17% Similarity=0.158 Sum_probs=9.7
Q ss_pred cEEEEeCcCCCc
Q psy5023 5 SYIFWIGDLNFR 16 (82)
Q Consensus 5 d~vfw~GDlNyR 16 (82)
.-++++||||=-
T Consensus 120 ~~~Ii~GDfN~~ 131 (240)
T 2ei9_A 120 ARVVICADTNAH 131 (240)
T ss_dssp SCEEEEEECCCC
T ss_pred CcEEEEEecccc
Confidence 468999999954
No 29
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=48.44 E-value=5.2 Score=29.29 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=15.8
Q ss_pred EEEEeCcCCCccCCCCCCCHHHHHHHHhcc
Q psy5023 6 YIFWIGDLNFRLNNPETYTQDIITDRIRDG 35 (82)
Q Consensus 6 ~vfw~GDlNyRi~~~~~l~~~~v~~~i~~~ 35 (82)
-||++||||---+ ..+.+.+..|
T Consensus 247 PvIl~GDFNs~P~-------s~vy~~L~~G 269 (398)
T 3ngq_A 247 PLVLCADLNSLPD-------SGVVEYLSNG 269 (398)
T ss_dssp CEEEEEECSCCTT-------SHHHHHHHHT
T ss_pred ceEEEeeCCCCCC-------CHHHHHHhcC
Confidence 5899999996544 3466666554
No 30
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=42.84 E-value=9.3 Score=27.03 Aligned_cols=15 Identities=40% Similarity=0.636 Sum_probs=11.5
Q ss_pred ccEEEEeCcCCCccC
Q psy5023 4 LSYIFWIGDLNFRLN 18 (82)
Q Consensus 4 ~d~vfw~GDlNyRi~ 18 (82)
..-|+++||||-+-.
T Consensus 263 ~~pvIl~GDFN~~p~ 277 (362)
T 4gew_A 263 GALVFFGGDLNLRDE 277 (362)
T ss_dssp TCEEEEEEECCCCGG
T ss_pred CCCeEEeecCCCCCc
Confidence 356899999996644
No 31
>2ffj_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.45A {Archaeoglobus fulgidus} SCOP: e.50.1.1
Probab=41.43 E-value=2.4 Score=29.97 Aligned_cols=17 Identities=18% Similarity=0.174 Sum_probs=14.6
Q ss_pred CCccEEEEeCcCCCccC
Q psy5023 2 DKLSYIFWIGDLNFRLN 18 (82)
Q Consensus 2 ~~~d~vfw~GDlNyRi~ 18 (82)
.++|.|+.=||+|||-=
T Consensus 248 ~~adLVI~KG~~Nyr~L 264 (300)
T 2ffj_A 248 EEADLIVAKGMANYECL 264 (300)
T ss_dssp HHCSEEEEESHHHHHHH
T ss_pred ccCCEEEEECChHHHHH
Confidence 46899999999999864
No 32
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=35.81 E-value=7.7 Score=30.02 Aligned_cols=13 Identities=31% Similarity=0.468 Sum_probs=0.0
Q ss_pred EEEEeCcCCCccC
Q psy5023 6 YIFWIGDLNFRLN 18 (82)
Q Consensus 6 ~vfw~GDlNyRi~ 18 (82)
-|+++||||-.-+
T Consensus 597 pvIl~GDFNs~P~ 609 (727)
T 4b8c_D 597 PVLICGDFNSYIN 609 (727)
T ss_dssp -------------
T ss_pred ceEEecccCCCCC
Confidence 5899999996544
No 33
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=33.66 E-value=14 Score=25.71 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=9.0
Q ss_pred cEEEEeCcCC
Q psy5023 5 SYIFWIGDLN 14 (82)
Q Consensus 5 d~vfw~GDlN 14 (82)
.-.+.+||||
T Consensus 170 ~~~ii~GDFN 179 (261)
T 1sr4_B 170 YSWMVVGDFN 179 (261)
T ss_dssp CEEEEEEECS
T ss_pred CcEEEEeeCC
Confidence 5789999999
No 34
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=39.63 E-value=8.9 Score=24.12 Aligned_cols=8 Identities=38% Similarity=0.737 Sum_probs=6.1
Q ss_pred CCCCCCcC
Q psy5023 67 QPTFKYQF 74 (82)
Q Consensus 67 ~PTYK~~~ 74 (82)
-|||||--
T Consensus 89 NPTYKffE 96 (122)
T 2lp1_A 89 NPTYKFFE 96 (122)
Confidence 49999854
No 35
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=27.71 E-value=30 Score=21.73 Aligned_cols=15 Identities=13% Similarity=0.525 Sum_probs=11.8
Q ss_pred CCccEEEEeCcCCCc
Q psy5023 2 DKLSYIFWIGDLNFR 16 (82)
Q Consensus 2 ~~~d~vfw~GDlNyR 16 (82)
.+.|.|+.+||+=.+
T Consensus 42 ~~~D~vi~~GDl~~~ 56 (195)
T 1xm7_A 42 KPEDTLYHLGDFTWH 56 (195)
T ss_dssp CTTCEEEECSCCBSC
T ss_pred CCCCEEEECCCCCCC
Confidence 367999999999443
No 36
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=27.69 E-value=30 Score=21.56 Aligned_cols=12 Identities=33% Similarity=0.324 Sum_probs=10.5
Q ss_pred CccEEEEeCcCC
Q psy5023 3 KLSYIFWIGDLN 14 (82)
Q Consensus 3 ~~d~vfw~GDlN 14 (82)
+.|.|+.+||+=
T Consensus 32 ~~D~vi~~GDl~ 43 (228)
T 1uf3_A 32 GADAIALIGNLM 43 (228)
T ss_dssp TCSEEEEESCSS
T ss_pred CCCEEEECCCCC
Confidence 579999999994
No 37
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=26.88 E-value=19 Score=25.31 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=10.1
Q ss_pred EEEEeCcCCCccC
Q psy5023 6 YIFWIGDLNFRLN 18 (82)
Q Consensus 6 ~vfw~GDlNyRi~ 18 (82)
=++++||||=.-+
T Consensus 179 pwii~GDFNr~P~ 191 (262)
T 2f1n_A 179 NWMILGDFNREPA 191 (262)
T ss_dssp EEEEEEECSSCHH
T ss_pred cEEEEecCCCCCc
Confidence 5789999996544
No 38
>2g8l_A 287AA long hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1
Probab=26.57 E-value=4.6 Score=28.61 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=14.6
Q ss_pred CCccEEEEeCcCCCccC
Q psy5023 2 DKLSYIFWIGDLNFRLN 18 (82)
Q Consensus 2 ~~~d~vfw~GDlNyRi~ 18 (82)
.++|.|+.=||+|||--
T Consensus 244 ~~adLVI~KG~~Nye~L 260 (299)
T 2g8l_A 244 NKADVIIAKGQGNFETL 260 (299)
T ss_dssp HHCSEEEEEHHHHHHHH
T ss_pred hcCCEEEEeCCchHhhh
Confidence 46899999999999864
No 39
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=24.25 E-value=36 Score=21.84 Aligned_cols=12 Identities=8% Similarity=0.307 Sum_probs=10.4
Q ss_pred CccEEEEeCcCC
Q psy5023 3 KLSYIFWIGDLN 14 (82)
Q Consensus 3 ~~d~vfw~GDlN 14 (82)
+.|.|+.+|||=
T Consensus 32 ~~D~vi~~GDl~ 43 (260)
T 2yvt_A 32 QPDILVVVGNIL 43 (260)
T ss_dssp CCSEEEEESCCC
T ss_pred CCCEEEECCCCC
Confidence 579999999993
No 40
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=23.31 E-value=37 Score=22.58 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=10.5
Q ss_pred CccEEEEeCcCC
Q psy5023 3 KLSYIFWIGDLN 14 (82)
Q Consensus 3 ~~d~vfw~GDlN 14 (82)
+.|.|+++|||=
T Consensus 66 ~~d~vi~~GDl~ 77 (330)
T 3ib7_A 66 RPDAIVFTGDLA 77 (330)
T ss_dssp CCSEEEECSCCB
T ss_pred CCCEEEECCCCC
Confidence 679999999993
No 41
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and amyloid beta A4 protein...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus}
Probab=22.62 E-value=23 Score=23.51 Aligned_cols=8 Identities=38% Similarity=0.737 Sum_probs=6.0
Q ss_pred CCCCCCcC
Q psy5023 67 QPTFKYQF 74 (82)
Q Consensus 67 ~PTYK~~~ 74 (82)
-|||||--
T Consensus 174 ~~~~~~~~ 181 (185)
T 2ysz_A 174 NPTYKFFE 181 (185)
T ss_dssp CSSCCCSC
T ss_pred Ccchhhhh
Confidence 48999854
No 42
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=21.87 E-value=43 Score=21.49 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=10.2
Q ss_pred CccEEEEeCcCC
Q psy5023 3 KLSYIFWIGDLN 14 (82)
Q Consensus 3 ~~d~vfw~GDlN 14 (82)
+.|.|++.||+=
T Consensus 41 ~~d~vi~~GDl~ 52 (274)
T 3d03_A 41 RPDAVVVSGDIV 52 (274)
T ss_dssp CCSEEEEESCCB
T ss_pred CCCEEEECCCCC
Confidence 469999999983
No 43
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=21.85 E-value=41 Score=21.94 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=10.8
Q ss_pred CccEEEEeCcCCC
Q psy5023 3 KLSYIFWIGDLNF 15 (82)
Q Consensus 3 ~~d~vfw~GDlNy 15 (82)
+.|.|+++||+=.
T Consensus 51 ~~d~vi~~GD~~~ 63 (322)
T 2nxf_A 51 RVQCVVQLGDIID 63 (322)
T ss_dssp TCSEEEECSCCBC
T ss_pred CCCEEEECCCccC
Confidence 5699999999943
No 44
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=21.37 E-value=45 Score=23.39 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=11.2
Q ss_pred CCccEEEEeCcCC
Q psy5023 2 DKLSYIFWIGDLN 14 (82)
Q Consensus 2 ~~~d~vfw~GDlN 14 (82)
.+.|.|+.+|||-
T Consensus 78 ~~~D~vi~aGDl~ 90 (296)
T 3rl5_A 78 PYGDILLHTGDFT 90 (296)
T ss_dssp CSCSEEEECSCCS
T ss_pred CCCCEEEECCccc
Confidence 4689999999993
No 45
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=21.23 E-value=33 Score=23.26 Aligned_cols=15 Identities=20% Similarity=0.660 Sum_probs=12.0
Q ss_pred CCccEEEEeCcCCCc
Q psy5023 2 DKLSYIFWIGDLNFR 16 (82)
Q Consensus 2 ~~~d~vfw~GDlNyR 16 (82)
++.|.|+|.||.+-.
T Consensus 66 ~~~DvvV~~~~~~~~ 80 (252)
T 1t0b_A 66 DRCDVLVWWGHIAHD 80 (252)
T ss_dssp HTCSEEEEECSSCGG
T ss_pred hcCCEEEEecCCCCC
Confidence 578999999987554
No 46
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=20.90 E-value=46 Score=21.16 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=10.1
Q ss_pred CccEEEEeCcC
Q psy5023 3 KLSYIFWIGDL 13 (82)
Q Consensus 3 ~~d~vfw~GDl 13 (82)
+.|.|+.+||+
T Consensus 52 ~~D~ii~~GDl 62 (190)
T 1s3l_A 52 NVETVIHCGDF 62 (190)
T ss_dssp CCSEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 57999999998
No 47
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=20.18 E-value=47 Score=21.35 Aligned_cols=11 Identities=27% Similarity=0.872 Sum_probs=9.9
Q ss_pred CccEEEEeCcC
Q psy5023 3 KLSYIFWIGDL 13 (82)
Q Consensus 3 ~~d~vfw~GDl 13 (82)
+.|.|+.+||+
T Consensus 55 ~~D~vi~~GDl 65 (215)
T 2a22_A 55 KINYVLCTGNV 65 (215)
T ss_dssp TCCEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 47999999998
Done!