RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5023
(82 letters)
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling,
SGC stockholm, structural genomics CONS hydrolase; 1.90A
{Homo sapiens}
Length = 357
Score = 87.3 bits (216), Expect = 1e-22
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 2 DKLSYIFWIGDLNFRLNNPETYTQDIITDRIRDGQFNDLLEQDQLRAVMQSGEAFSEFNE 61
+ +FW GD NFRL+ T ++ + LL+ DQL M+ G F F E
Sbjct: 194 TRFDEVFWFGDFNFRLSGGRTVVDALL-CQGLVVDVPALLQHDQLIREMRKGSIFKGFQE 252
Query: 62 TTPTFQPTFKYQFNSHNYDNK 82
F P++K+ YD+
Sbjct: 253 PDIHFLPSYKFDIGKDTYDST 273
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling,
structural genomics consortium stockholm, magnesium
binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB:
3nr8_B*
Length = 316
Score = 84.2 bits (208), Expect = 2e-21
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 6 YIFWIGDLNFRLNNPETYTQDIITDRIRDGQFNDLLEQDQLRAVMQSGEAFSEFNETTPT 65
++FW GDLN+RL+ I + I +F LL DQL + + F F+E +
Sbjct: 185 HLFWFGDLNYRLDMDI----QEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEIS 240
Query: 66 FQPTFKYQFNSHNYDN 81
F PT++Y+ S +
Sbjct: 241 FPPTYRYERGSRDTYA 256
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas;
INPP5BA,phosphoinositide 5-phosphatase, inositol
signalling, phosphatase, magnesium; HET: PIF; 2.40A
{Homo sapiens} PDB: 3n9v_A
Length = 313
Score = 82.9 bits (205), Expect = 5e-21
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 6 YIFWIGDLNFRLNNPETYTQDIITDRIRDGQFNDLLEQDQLRAVMQSGEAFSEFNETTPT 65
I W+GDLN+R+ + + I + F L DQL+ + + F F E T
Sbjct: 184 VILWLGDLNYRIEEL---DVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELT 240
Query: 66 FQPTFKYQFNSHNYDNK 82
FQPT+KY S ++D
Sbjct: 241 FQPTYKYDTGSDDWDTS 257
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase;
spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP;
1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB:
1i9y_A*
Length = 347
Score = 82.3 bits (203), Expect = 1e-20
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 6 YIFWIGDLNFRLNNPETYTQDIITDRIRDGQFNDLLEQDQLRAVMQSGEAFSEFNETTPT 65
Y+ W GD N+R++ + + I G+ + L E DQL M +G+ F F+E T
Sbjct: 201 YVVWFGDFNYRISLTY----EEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPIT 256
Query: 66 FQPTFKYQFNSHNYDNK 82
F PT+K+ + YD
Sbjct: 257 FPPTYKFDIGTDIYDTS 273
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport
protein; HET: HEM; 1.30A {Cimex lectularius} SCOP:
d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Length = 282
Score = 81.1 bits (200), Expect = 1e-20
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 6 YIFWIGDLNFRLNNPETYTQDIITDRIRDGQFNDLLEQDQLRAVMQSGEAFSEFNETTPT 65
++FWIGDLN R+ T+ + ++ + L+ DQL+ + F + E T
Sbjct: 165 FLFWIGDLNVRVETNATHAKSLV----DQNNIDGLMAFDQLKKAK-EQKLFDGWTEPQVT 219
Query: 66 FQPTFKYQFNSHNYDNK 82
F+PT+K++ N+ YD
Sbjct: 220 FKPTYKFKPNTDEYDLS 236
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.037
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 31/91 (34%)
Query: 4 LSYIFWIGDLNFR-------LNNPETYTQDIITD---------RIRDGQFNDLLEQDQLR 47
++ +F+IG R + P + +D + + I + L Q+Q++
Sbjct: 300 ITVLFFIG---VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN------LTQEQVQ 350
Query: 48 AVMQSGEAFSEFNETTPTFQPTFKYQFNSHN 78
+ + N P + N
Sbjct: 351 DYVN------KTNSHLPAGKQVEISLVNGAK 375
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske
oxygenase, 2Fe-2S, electron transfer, oxidoreductase;
2.30A {Nocardioides aromaticivorans}
Length = 394
Score = 26.9 bits (59), Expect = 0.70
Identities = 7/51 (13%), Positives = 13/51 (25%), Gaps = 1/51 (1%)
Query: 2 DKLSYIFWIGDLNFRLNNPETYTQDIITDRIRDGQFNDLLEQDQ-LRAVMQ 51
+ F + + +R RD + + D R Q
Sbjct: 295 ETQHEYFQVLQRKVEGPEDVKTFEVEFEERWRDDALHGFNDDDVWAREAQQ 345
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction,
fatty-acid binding, sigma regulator, signaling protein;
HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB:
3k3d_A
Length = 158
Score = 25.3 bits (56), Expect = 1.9
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 10/59 (16%)
Query: 7 IFWIGDLNFRLNNPETYTQ-----DIITDRIRDGQFNDLLEQ---DQLRAVMQSGEAFS 57
D F N Y D + R+ + +L Q + L V Q+GE S
Sbjct: 32 GLEGPDHRFVAVNA-AYRGFSPLLDTVGQPAREV-YPELEGQQIYEMLDRVYQTGEPQS 88
>2w0c_L Protein 2; virus, member of PRD1-adeno viral lineage,
membrane-containing bacteriophage, virus virion,
membrane; 7.00A {Pseudoalteromonas phage PM2}
Length = 335
Score = 25.4 bits (55), Expect = 2.1
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 8 FWIGDLNFRLNNPETYTQDIITDRI--RDGQFNDLLEQDQLR 47
+W+GDL++ T ++D+ + +I RDG +LL +D R
Sbjct: 74 YWVGDLDYSFQEQTTKSRDVNSFQIPLRDG-VRELLPEDASR 114
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain,
mycobacteium tuberculos molecule binding domain; 2.30A
{Mycobacterium tuberculosis}
Length = 185
Score = 24.6 bits (54), Expect = 4.2
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 10/59 (16%)
Query: 7 IFWIGDLNFRLNNPETYTQ-----DIITDRIRDGQFNDLLEQ---DQLRAVMQSGEAFS 57
D F N Y D + R+ + +L Q + L V Q+GE S
Sbjct: 52 GLEGPDHRFVAVNA-AYRGFSPLLDTVGQPAREV-YPELEGQQIYEMLDRVYQTGEPQS 108
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 24.3 bits (53), Expect = 5.3
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 47 RAVMQSGEAFSEFNETTPTFQPTFK 71
A++QSG + ++ ++
Sbjct: 244 SAILQSGGPLPYHDSSSVGPDISYN 268
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 24.2 bits (53), Expect = 6.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 47 RAVMQSGEAFSEFNETTPTFQ 67
RA++ SG + S F T P F
Sbjct: 225 RAILMSGTSSSAFFTTNPVFA 245
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 23.9 bits (52), Expect = 6.8
Identities = 4/25 (16%), Positives = 6/25 (24%)
Query: 47 RAVMQSGEAFSEFNETTPTFQPTFK 71
+MQSG +
Sbjct: 236 AGIMQSGAMVPSDPVDGTYGNEIYD 260
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske
nonheme iron oxygenase, electron transfer,
putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Length = 389
Score = 24.2 bits (52), Expect = 7.3
Identities = 2/41 (4%), Positives = 8/41 (19%)
Query: 5 SYIFWIGDLNFRLNNPETYTQDIITDRIRDGQFNDLLEQDQ 45
+ + ++ + N + D
Sbjct: 295 HLYLQMLGRRVGSEEEARSFEAEFREKWVELALNGFNDDDI 335
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.0 bits (51), Expect = 7.7
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 27/82 (32%)
Query: 7 IFWIGDLNF-RLNNPETYTQDIITDRIRDGQFNDLLEQDQ--LRAVMQSGEAFSEFNETT 63
IFW+ N N+PE +LE Q L + + + S+ +
Sbjct: 184 IFWL---NLKNCNSPE-----------------TVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 64 P----TFQPTFKYQFNSHNYDN 81
+ Q + S Y+N
Sbjct: 224 KLRIHSIQAELRRLLKSKPYEN 245
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 23.8 bits (52), Expect = 8.2
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 21 ETYTQDIITDRIRDGQFNDLLEQDQL----RAVMQSGEAFSE 58
+ +II R + D D L AV + G S
Sbjct: 210 QKILSEIIIARKEEEVNKDSSTSDLLSGLLSAVYRDGTPMSL 251
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,247,612
Number of extensions: 58816
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 19
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)