BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5025
(533 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PVE|A Chain A, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
pdb|3PVE|B Chain B, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
Length = 189
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 89 FNGSSYLRYQGL-------GEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYL 141
FNG SYL +GL GE+ + L +VF A P+G+LLYNG + DG GDF++L L
Sbjct: 14 FNGFSYLELKGLHTFERDLGEK----MALEMVFLARGPSGLLLYNGQKTDGKGDFVSLAL 69
Query: 142 NDRYVDFTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFT 201
++R+++F +DLG GAA +RS PI+LG W ++ L R GR LQV P SP P T
Sbjct: 70 HNRHLEFRYDLGKGAAIIRSKEPIALGTWVRVFLERNGRKGALQVGDGPRVLGESPVPHT 129
Query: 202 QXXXXXXXXXGGVPDYNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAIQGVNVVNCA 260
GG PD++ ++ + S F G IQ V + H+L ++ V+V A
Sbjct: 130 MLNLKEPLYVGGAPDFSKLARGAAVASGFDGAIQLVSLRGHQLLTQEHVLRAVDVAPFA 188
>pdb|1Q56|A Chain A, Nmr Structure Of The B0 Isoform Of The Agrin G3 Domain In
Its Ca2+ Bound State
Length = 195
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 5/182 (2%)
Query: 83 DLQVPQFNGSSYLRYQGL---GEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIAL 139
D + F+G +Y+ Y E+ L + K G++L++G + D+IAL
Sbjct: 13 DAEAIAFDGRTYMEYHNAVTKSEKALQSNHFELSIKTEATQGLILWSGKGLER-SDYIAL 71
Query: 140 YLNDRYVDFTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGP 199
+ D +V +DLG+ LRS+ PI+ W ++ R R LQV SP
Sbjct: 72 AIVDGFVQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLG 131
Query: 200 FTQXXXXXXXXXGGVPDYNIVSPKVKIKSS-FIGCIQKVLINNHELNILGEAIQGVNVVN 258
TQ GG+ ++ K S+ FIGCI+ V+++ EL+++ +A+ +++
Sbjct: 132 ATQLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDRQELHLVEDALNNPTILH 191
Query: 259 CA 260
C+
Sbjct: 192 CS 193
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 37/193 (19%)
Query: 312 DPEIIHSSGLLHYKFQLHVDFRITGYEFN-IDMRIKTSSSSGLILWTGSS-QSKDFLALG 369
D E I G + ++ V + N ++ IKT ++ GLILW+G + D++AL
Sbjct: 13 DAEAIAFDGRTYMEYHNAVTKSEKALQSNHFELSIKTEATQGLILWSGKGLERSDYIALA 72
Query: 370 IHNGYAHVMYXXXXXXXXXXXXQTKINNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEF 429
I +G+ +MY VV+ + +N + I
Sbjct: 73 IVDGFVQMMYDLGSKP-------------------------VVLRSTVPINTNHWTHI-- 105
Query: 430 KCLSIQRLHRTGKQCLIRIDTDYSMQSISGGKFEQLNTDSGLYVGGVEDIEELTR--SKY 487
+ +R ++ +++ + + S QL+TD L++GG+E + + Y
Sbjct: 106 ------KAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAHKLPKAY 159
Query: 488 HHSFKGWISNLIL 500
F G I ++I+
Sbjct: 160 STGFIGCIRDVIV 172
>pdb|1PZ8|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|C Chain C, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|D Chain D, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 201
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 13/190 (6%)
Query: 83 DLQVPQFNGSSYLRYQGL-----------GEQYLSLLDLTIVFKAIEPNGILLYNGHRAD 131
D + F+G +Y+ Y E+ L + K G++L++G +
Sbjct: 11 DAEAIAFDGRTYMEYHNAVTKSHLSNEIPAEKALQSNHFELSIKTEATQGLILWSGKGLE 70
Query: 132 GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYLQVDRFPS 191
D+IAL + D +V +DLG+ LRS+ PI+ W ++ R R LQV
Sbjct: 71 R-SDYIALAIVDGFVQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGSLQVGNEAP 129
Query: 192 SQILSPGPFTQXXXXXXXXXGGVPDYNIVSPKVKIKSS-FIGCIQKVLINNHELNILGEA 250
SP TQ GG+ ++ K S+ FIGCI+ V+++ EL+++ +A
Sbjct: 130 ITGSSPLGATQLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDRQELHLVEDA 189
Query: 251 IQGVNVVNCA 260
+ +++C+
Sbjct: 190 LNNPTILHCS 199
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 36/162 (22%)
Query: 342 DMRIKTSSSSGLILWTGSS-QSKDFLALGIHNGYAHVMYXXXXXXXXXXXXQTKINNGVW 400
++ IKT ++ GLILW+G + D++AL I +G+ +MY
Sbjct: 50 ELSIKTEATQGLILWSGKGLERSDYIALAIVDGFVQMMYDLGSKP--------------- 94
Query: 401 HRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSMQSISGG 460
VV+ + +N + I + +R ++ +++ + + S
Sbjct: 95 ----------VVLRSTVPINTNHWTHI--------KAYRVQREGSLQVGNEAPITGSSPL 136
Query: 461 KFEQLNTDSGLYVGGVEDIEELTR--SKYHHSFKGWISNLIL 500
QL+TD L++GG+E + + Y F G I ++I+
Sbjct: 137 GATQLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIV 178
>pdb|3SH4|A Chain A, Laminin G Like Domain 3 From Human Perlecan
pdb|3SH5|A Chain A, Calcium-Bound Laminin G Like Domain 3 From Human Perlecan
Length = 195
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 12/151 (7%)
Query: 120 NGILLYNGHRADGVG---DFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWHKLRLT 176
+G+LL+ G G DFI+L L D ++ F + LG+G A L S +PI+ GEWH++
Sbjct: 44 SGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSGEARLVSEDPINDGEWHRVTAL 103
Query: 177 RTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGVPDYNIVSPKVKIKSSFIGCIQK 236
R GR +QVD SPGP GG PD ++ + S GC++
Sbjct: 104 REGRRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATLT-GGRFSSGITGCVKN 162
Query: 237 VLINN--------HELNILGEAIQGVNVVNC 259
+++++ L++ A G N C
Sbjct: 163 LVLHSARPGAPPPQPLDLQHRAQAGANTRPC 193
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 41/191 (21%)
Query: 316 IHSSGLLHYKFQLHVDFR-ITGYEFNIDMRIKTSSSSGLILWTG-----SSQSKDFLALG 369
H G L F HV R + I++ ++TS++SGL+LW G + Q KDF++LG
Sbjct: 10 FHDDGFL--AFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLG 67
Query: 370 IHNGYAHVMYXXXXXXXXXXXXQTKINNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEF 429
+ +G+ Y + IN+G WHR+T R
Sbjct: 68 LQDGHLVFRY-QLGSGEARLVSEDPINDGEWHRVTALRE--------------------- 105
Query: 430 KCLSIQRLHRTGKQCLIRIDTDYSMQSISGGKFEQLNTDSGLYVGGVEDIEELTRSKYHH 489
G++ I++D + + S G +N +Y+GG D+ LT ++
Sbjct: 106 -----------GRRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATLTGGRFSS 154
Query: 490 SFKGWISNLIL 500
G + NL+L
Sbjct: 155 GITGCVKNLVL 165
>pdb|1PZ7|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ7|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 204
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 16/193 (8%)
Query: 83 DLQVPQFNGSSYLRYQGLGEQYLSLLD--------------LTIVFKAIEPNGILLYNGH 128
D + F+G +Y+ Y + LD + K G++L++G
Sbjct: 11 DAEAIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGK 70
Query: 129 RADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYLQVDR 188
+ D+IAL + D +V +DLG+ LRS+ PI+ W ++ R R LQV
Sbjct: 71 GLER-SDYIALAIVDGFVQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGSLQVGN 129
Query: 189 FPSSQILSPGPFTQXXXXXXXXXGGVPDYNIVSPKVKIKSS-FIGCIQKVLINNHELNIL 247
SP TQ GG+ ++ K S+ FIGCI+ V+++ EL+++
Sbjct: 130 EAPITGSSPLGATQLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDRQELHLV 189
Query: 248 GEAIQGVNVVNCA 260
+A+ +++C+
Sbjct: 190 EDALNNPTILHCS 202
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 36/162 (22%)
Query: 342 DMRIKTSSSSGLILWTGSS-QSKDFLALGIHNGYAHVMYXXXXXXXXXXXXQTKINNGVW 400
++ IKT ++ GLILW+G + D++AL I +G+ +MY
Sbjct: 53 ELSIKTEATQGLILWSGKGLERSDYIALAIVDGFVQMMYDLGSKP--------------- 97
Query: 401 HRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSMQSISGG 460
VV+ + +N + I + +R ++ +++ + + S
Sbjct: 98 ----------VVLRSTVPINTNHWTHI--------KAYRVQREGSLQVGNEAPITGSSPL 139
Query: 461 KFEQLNTDSGLYVGGVEDIEELTR--SKYHHSFKGWISNLIL 500
QL+TD L++GG+E + + Y F G I ++I+
Sbjct: 140 GATQLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIV 181
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 97/454 (21%), Positives = 170/454 (37%), Gaps = 116/454 (25%)
Query: 52 CEHGGKCITTPGSSYCLCP-LGFTGDLCQTRLDLQVPQFNGSSYLRYQGLGEQYLSLLD- 109
C +GG C + C C GF G C + + F GS Y Y S D
Sbjct: 198 CLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDE 257
Query: 110 LTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGA--ATLRSSN-PIS 166
+T+ FK ++ NG++L+ G A D++ L L + V +LG+GA A + N +
Sbjct: 258 ITLSFKTLQRNGLMLHTGKSA----DYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFN 313
Query: 167 LGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGVPDYNIVSPKVKI 226
WH +++TR R + VD ++ + +T GG P + P +
Sbjct: 314 DNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADL-PGSPV 372
Query: 227 KSSFIGCIQKVLINNH----ELNILGE------AIQGVNVVNCAHPCITQPCGSGSCVPL 276
++F+GC+++V+ N+ EL+ L + I GV C + P
Sbjct: 373 SNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPI-------- 424
Query: 277 YDGYKCVCTQSCKESHLTEVMCASFDHGASFLHYLDPEIIHSSGLLHYKFQLHVDFRITG 336
+F+ SF+ L +G + + F
Sbjct: 425 -----------------------TFETPESFIS-LPKWNAKKTGSISFDF---------- 450
Query: 337 YEFNIDMRIKTSSSSGLILWT-GSSQSK-----------DFLALGIHNGYAHVMYXXXXX 384
+T+ +GLIL++ G + + DF A+ + +G+ +++
Sbjct: 451 ---------RTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSG 501
Query: 385 XXXXXXXQTKINNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTGKQC 444
Q K+N+G W+ H +F QR R+G
Sbjct: 502 TIKIKALQKKVNDGEWY----HVDF-------------------------QRDGRSGTIS 532
Query: 445 LIRIDTDYSMQSISGGKFEQLNTDSGLYVGGVED 478
+ + T Y+ + G+ E L+ D LY+GG+ +
Sbjct: 533 VNTLRTPYT----APGESEILDLDDELYLGGLPE 562
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 136/334 (40%), Gaps = 43/334 (12%)
Query: 92 SSYLRYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFD 151
SSY+ L Q + + L FK +G++LYN DG DFI + L Y+ + FD
Sbjct: 855 SSYVALATL--QAYTSMHLFFQFKTTSLDGLILYNS--GDG-NDFIVVELVKGYLHYVFD 909
Query: 152 LGTGAATLR--SSNPISLGEWHKLRLTR-TGRHAYLQVDRFPSSQILSPGPFTQXXXXXX 208
LG GA ++ S+ P++ +WH + ++R T +++D ++QI +
Sbjct: 910 LGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGA--RNLDLKSD 967
Query: 209 XXXGGVPD--YNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAI--QGVNVVNCAHP-- 262
GGV Y + V K F GC+ V +N +++ +A+ G C P
Sbjct: 968 LYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPST 1027
Query: 263 -CITQPCGS-GSCVPLYDGYKCVCTQS------CKESHLTEVMCASFDHGASFLHYLDPE 314
C C + G C+ +DG+ C C+ + C + T + F G + Y P
Sbjct: 1028 TCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYI----FSKGGGQITYKWPP 1083
Query: 315 IIHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGY 374
S +L + F E + ++ SSSGL D+L L IH G
Sbjct: 1084 NDRPSTRAD---RLAIGFSTVQKEA---VLVRVDSSSGL---------GDYLELHIHQGK 1128
Query: 375 AHVMYXXXXXXXXXXXXQTKINNGVWHRLTVHRN 408
V + IN+G +H + R+
Sbjct: 1129 IGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRS 1162
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 125/295 (42%), Gaps = 55/295 (18%)
Query: 110 LTIVFKAIEPNGILLYN----GHRADGVG------DFIALYLNDRYVDFTFDLGTGAATL 159
++ F+ EPNG++L++ H+ D DF A+ + D ++ D+G+G +
Sbjct: 446 ISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKI 505
Query: 160 RS-SNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGVPD-- 216
++ ++ GEW+ + R GR + V+ + +PG GG+P+
Sbjct: 506 KALQKKVNDGEWYHVDFQRDGRSGTISVNTL-RTPYTAPGESEILDLDDELYLGGLPENK 564
Query: 217 YNIVSP----KVKIKSSFIGCIQKVLINNHELNILGEA-IQGVNVV------NCAHPCIT 265
+V P + ++GCI+ + I+ +I A +Q V A PC++
Sbjct: 565 AGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLS 624
Query: 266 QPC-GSGSCVPLYDGYKCVCT------QSCKESHLTEVMCASFDHGASFLHYLDPEIIHS 318
PC +G C ++ Y C C+ +SC+ E S+D G+ F+ P ++H+
Sbjct: 625 NPCKNNGMCRDGWNRYVCDCSGTGYLGRSCER----EATVLSYD-GSMFMKIQLPVVMHT 679
Query: 319 SGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNG 373
++ +R ++ + G+++ T S S D L L + G
Sbjct: 680 EAE------------------DVSLRFRSQRAYGILMATTSRDSADTLRLELDAG 716
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 89/433 (20%), Positives = 149/433 (34%), Gaps = 88/433 (20%)
Query: 109 DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLN-DRYVDFTFDLGTG-AATLRSSNPIS 166
+++ K G++LY +G DF+ L L + +F + ATL + P++
Sbjct: 23 EMSFQLKTRSARGLVLY--FDDEGFCDFLELILTRGGRLQLSFSIFCAEPATLLTDTPVN 80
Query: 167 LGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGVPD------YNIV 220
G WH +R+ R R+ L +D+ + + GG+P +
Sbjct: 81 DGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDMTVFSGLFVGGLPPELRAAALKLT 140
Query: 221 SPKVKIKSSFIGCIQKVLINNHELNILGEAIQGVNVVNCAHPCIT---QPC--------- 268
V+ + F G I+ V +N+ L + V P + PC
Sbjct: 141 LASVREREPFKGWIRDVRVNSS----LALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGG 196
Query: 269 ---GSGSCVPLYDGYKCVCTQSCKE----SHLTEVMCASFDHGASFLHYLDPEIIHSSGL 321
G C + D C C+++ S E A+F F + L I SS
Sbjct: 197 VCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSS-- 254
Query: 322 LHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGYAHVMYXX 381
I + KT +GL+L TG +S D++ L + NG ++
Sbjct: 255 ----------------SDEITLSFKTLQRNGLMLHTG--KSADYVNLALKNGAVSLVINL 296
Query: 382 XXXXXXXXXXQT--KINNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHR 439
K N+ WH + V RN
Sbjct: 297 GSGAFEALVEPVNGKFNDNAWHDVKVTRNL------------------------------ 326
Query: 440 TGKQCLIRIDTDYSMQSISGGKFEQLNTDSGLYVGGVEDIEELTRSKYHHSFKGWISNLI 499
+Q I +D + + + L +D YVGG +L S ++F G + ++
Sbjct: 327 --RQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVV 384
Query: 500 LSNDYQVKLPLSR 512
N+ V+L LSR
Sbjct: 385 YKNN-DVRLELSR 396
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 27/167 (16%)
Query: 36 KGRSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPL-GFTGDLCQTRLDLQVPQFNGSSY 94
+G S C ED C+ + G C+ C C + F+G LC G++Y
Sbjct: 1023 EGPSTTCQEDSCS-----NQGVCLQQWDGFSCDCSMTSFSGPLCNDP---------GTTY 1068
Query: 95 LRYQGLGE---------QYLSLLD-LTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDR 144
+ +G G+ + + D L I F ++ +L+ + G+GD++ L+++
Sbjct: 1069 IFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLV-RVDSSSGLGDYLELHIHQG 1127
Query: 145 YVDFTFDLGTGAATLRSSNPI-SLGEWHKLRLTRTGRHAYLQVDRFP 190
+ F++GT + SN I + G++H +R TR+G +A LQVD +P
Sbjct: 1128 KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWP 1174
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 71/199 (35%), Gaps = 50/199 (25%)
Query: 338 EFNIDMRIKTSSSSGLILWTGSSQSKDFLALGI-HNGYAHVMYXXXXXXXXXXXXQTKIN 396
E + ++KT S+ GL+L+ DFL L + G + + T +N
Sbjct: 21 ESEMSFQLKTRSARGLVLYFDDEGFCDFLELILTRGGRLQLSFSIFCAEPATLLTDTPVN 80
Query: 397 NGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSMQS 456
+G WH + + R F + ++E K + ++ R
Sbjct: 81 DGAWHNVRIRRQF--------RNTTLFIDQVEAKWVEVKSKRR----------------- 115
Query: 457 ISGGKFEQLNTDSGLYVGGVEDIEE-------LTRSKYHHSFKGWI------SNLILSND 503
+ SGL+VGG+ L + FKGWI S+L L D
Sbjct: 116 -------DMTVFSGLFVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVNSSLALPVD 168
Query: 504 Y-QVKL---PLSRSQGSSC 518
+VKL P + GS C
Sbjct: 169 SGEVKLDDEPPNSGGGSPC 187
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
Length = 1245
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 136/334 (40%), Gaps = 43/334 (12%)
Query: 92 SSYLRYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFD 151
SSY+ L Q + + L FK +G++LYN DG DFI + L Y+ + FD
Sbjct: 846 SSYVALATL--QAYTSMHLFFQFKTTSLDGLILYNS--GDG-NDFIVVELVKGYLHYVFD 900
Query: 152 LGTGAATLR--SSNPISLGEWHKLRLTR-TGRHAYLQVDRFPSSQILSPGPFTQXXXXXX 208
LG GA ++ S+ P++ +WH + ++R T +++D ++QI +
Sbjct: 901 LGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGA--RNLDLKSD 958
Query: 209 XXXGGVPD--YNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAI--QGVNVVNCAHP-- 262
GGV Y + V K F GC+ V +N +++ +A+ G C P
Sbjct: 959 LYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPST 1018
Query: 263 -CITQPCGS-GSCVPLYDGYKCVCTQS------CKESHLTEVMCASFDHGASFLHYLDPE 314
C C + G C+ +DG+ C C+ + C + T + F G + Y P
Sbjct: 1019 TCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYI----FSKGGGQITYKWPP 1074
Query: 315 IIHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGY 374
S +L + F E + ++ SSSGL D+L L IH G
Sbjct: 1075 NDRPSTRAD---RLAIGFSTVQKEA---VLVRVDSSSGL---------GDYLELHIHQGK 1119
Query: 375 AHVMYXXXXXXXXXXXXQTKINNGVWHRLTVHRN 408
V + IN+G +H + R+
Sbjct: 1120 IGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRS 1153
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 97/454 (21%), Positives = 170/454 (37%), Gaps = 116/454 (25%)
Query: 52 CEHGGKCITTPGSSYCLCP-LGFTGDLCQTRLDLQVPQFNGSSYLRYQGLGEQYLSLLD- 109
C +GG C + C C GF G C + + F GS Y Y S D
Sbjct: 198 CLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDE 257
Query: 110 LTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGA--ATLRSSN-PIS 166
+T+ FK ++ NG++L+ G A D++ L L + V +LG+GA A + N +
Sbjct: 258 ITLSFKTLQRNGLMLHTGKSA----DYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFN 313
Query: 167 LGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGVPDYNIVSPKVKI 226
WH +++TR R + VD ++ + +T GG P + P +
Sbjct: 314 DNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADL-PGSPV 372
Query: 227 KSSFIGCIQKVLINNH----ELNILGE------AIQGVNVVNCAHPCITQPCGSGSCVPL 276
++F+GC+++V+ N+ EL+ L + I GV C + P
Sbjct: 373 SNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPI-------- 424
Query: 277 YDGYKCVCTQSCKESHLTEVMCASFDHGASFLHYLDPEIIHSSGLLHYKFQLHVDFRITG 336
+F+ SF+ L +G + + F
Sbjct: 425 -----------------------TFETPESFIS-LPKWNAKKTGSISFDF---------- 450
Query: 337 YEFNIDMRIKTSSSSGLILWT-GSSQSK-----------DFLALGIHNGYAHVMYXXXXX 384
+T+ +GLIL++ G + + DF A+ + +G+ +++
Sbjct: 451 ---------RTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSG 501
Query: 385 XXXXXXXQTKINNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTGKQC 444
Q K+N+G W+ H +F QR R+G
Sbjct: 502 TIKIKALQKKVNDGEWY----HVDF-------------------------QRDGRSGTIS 532
Query: 445 LIRIDTDYSMQSISGGKFEQLNTDSGLYVGGVED 478
+ + T Y+ + G+ E L+ D LY+GG+ +
Sbjct: 533 VNTLRTPYT----APGESEILDLDDELYLGGLPE 562
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/329 (21%), Positives = 134/329 (40%), Gaps = 56/329 (17%)
Query: 110 LTIVFKAIEPNGILLYN----GHRADGVG------DFIALYLNDRYVDFTFDLGTGAATL 159
++ F+ EPNG++L++ H+ D DF A+ + D ++ D+G+G +
Sbjct: 446 ISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKI 505
Query: 160 RS-SNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGVPD-- 216
++ ++ GEW+ + R GR + V+ + +PG GG+P+
Sbjct: 506 KALQKKVNDGEWYHVDFQRDGRSGTISVNTL-RTPYTAPGESEILDLDDELYLGGLPENK 564
Query: 217 YNIVSP----KVKIKSSFIGCIQKVLINNHELNILGEA-IQGVNVV------NCAHPCIT 265
+V P + ++GCI+ + I+ +I A +Q V A PC++
Sbjct: 565 AGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLS 624
Query: 266 QPC-GSGSCVPLYDGYKCVCT------QSCKESHLTEVMCASFDHGASFLHYLDPEIIHS 318
PC +G C ++ Y C C+ +SC+ E S+D G+ F+ P ++H+
Sbjct: 625 NPCKNNGMCRDGWNRYVCDCSGTGYLGRSCER----EATVLSYD-GSMFMKIQLPVVMHT 679
Query: 319 SGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGYAHVM 378
++ +R ++ + G+++ T S S D L L + G +
Sbjct: 680 EAE------------------DVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLT 721
Query: 379 YXXXXXXXXXXXXQTKINNGVWHRLTVHR 407
+N+ WH + V R
Sbjct: 722 VNLGKGPETLFAGY-NLNDNEWHTVRVVR 749
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 47 CNKTPCEHGGKCITTPGSSYCLCP-LGFTGDLCQTRLDLQVPQFNGSSYLRYQGLGEQYL 105
C PC++ G C C C G+ G C+ + V ++GS +++ Q +
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCER--EATVLSYDGSMFMKIQLPVVMHT 679
Query: 106 SLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPI 165
D+++ F++ GIL+ R D + L L+ V T +LG G TL + +
Sbjct: 680 EAEDVSLRFRSQRAYGILMATTSRDSA--DTLRLELDAGRVKLTVNLGKGPETLFAGYNL 737
Query: 166 SLGEWHKLRLTRTGRHAYLQVD 187
+ EWH +R+ R G+ L VD
Sbjct: 738 NDNEWHTVRVVRRGKSLKLTVD 759
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 88/433 (20%), Positives = 148/433 (34%), Gaps = 88/433 (20%)
Query: 109 DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLN-DRYVDFTFDLGTG-AATLRSSNPIS 166
+++ K G++LY +G DF+ L L + +F + ATL + P++
Sbjct: 23 EMSFQLKTRSARGLVLY--FDDEGFCDFLELILTRGGRLQLSFSIFCAEPATLLTDTPVN 80
Query: 167 LGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGVPD------YNIV 220
G WH +R+ R R+ L +D+ + + GG+P +
Sbjct: 81 DGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDMTVFSGLFVGGLPPELRAAALKLT 140
Query: 221 SPKVKIKSSFIGCIQKVLINNHELNILGEAIQGVNVVNCAHPCIT---QPC--------- 268
V+ + F G I+ V + + L + V P + PC
Sbjct: 141 LASVREREPFKGWIRDVRVQSS----LALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGG 196
Query: 269 ---GSGSCVPLYDGYKCVCTQSCKE----SHLTEVMCASFDHGASFLHYLDPEIIHSSGL 321
G C + D C C+++ S E A+F F + L I SS
Sbjct: 197 VCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSS-- 254
Query: 322 LHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGYAHVMYXX 381
I + KT +GL+L TG +S D++ L + NG ++
Sbjct: 255 ----------------SDEITLSFKTLQRNGLMLHTG--KSADYVNLALKNGAVSLVINL 296
Query: 382 XXXXXXXXXXQT--KINNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHR 439
K N+ WH + V RN
Sbjct: 297 GSGAFEALVEPVNGKFNDNAWHDVKVTRNL------------------------------ 326
Query: 440 TGKQCLIRIDTDYSMQSISGGKFEQLNTDSGLYVGGVEDIEELTRSKYHHSFKGWISNLI 499
+Q I +D + + + L +D YVGG +L S ++F G + ++
Sbjct: 327 --RQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVV 384
Query: 500 LSNDYQVKLPLSR 512
N+ V+L LSR
Sbjct: 385 YKNN-DVRLELSR 396
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 27/167 (16%)
Query: 36 KGRSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPL-GFTGDLCQTRLDLQVPQFNGSSY 94
+G S C ED C+ + G C+ C C + F+G LC G++Y
Sbjct: 1014 EGPSTTCQEDSCS-----NQGVCLQQWDGFSCDCSMTSFSGPLCNDP---------GTTY 1059
Query: 95 LRYQGLGE---------QYLSLLD-LTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDR 144
+ +G G+ + + D L I F ++ +L+ + G+GD++ L+++
Sbjct: 1060 IFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLV-RVDSSSGLGDYLELHIHQG 1118
Query: 145 YVDFTFDLGTGAATLRSSNPI-SLGEWHKLRLTRTGRHAYLQVDRFP 190
+ F++GT + SN I + G++H +R TR+G +A LQVD +P
Sbjct: 1119 KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWP 1165
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 71/199 (35%), Gaps = 50/199 (25%)
Query: 338 EFNIDMRIKTSSSSGLILWTGSSQSKDFLALGI-HNGYAHVMYXXXXXXXXXXXXQTKIN 396
E + ++KT S+ GL+L+ DFL L + G + + T +N
Sbjct: 21 ESEMSFQLKTRSARGLVLYFDDEGFCDFLELILTRGGRLQLSFSIFCAEPATLLTDTPVN 80
Query: 397 NGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSMQS 456
+G WH + + R F + ++E K + ++ R
Sbjct: 81 DGAWHNVRIRRQF--------RNTTLFIDQVEAKWVEVKSKRR----------------- 115
Query: 457 ISGGKFEQLNTDSGLYVGGVEDIEE-------LTRSKYHHSFKGWI------SNLILSND 503
+ SGL+VGG+ L + FKGWI S+L L D
Sbjct: 116 -------DMTVFSGLFVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVD 168
Query: 504 Y-QVKL---PLSRSQGSSC 518
+VKL P + GS C
Sbjct: 169 SGEVKLDDEPPNSGGGSPC 187
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 136/334 (40%), Gaps = 43/334 (12%)
Query: 92 SSYLRYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFD 151
SSY+ L Q + + L FK +G++LYN DG DFI + L Y+ + FD
Sbjct: 630 SSYVALATL--QAYTSMHLFFQFKTTSLDGLILYNS--GDG-NDFIVVELVKGYLHYVFD 684
Query: 152 LGTGAATLR--SSNPISLGEWHKLRLTR-TGRHAYLQVDRFPSSQILSPGPFTQXXXXXX 208
LG GA ++ S+ P++ +WH + ++R T +++D ++QI +
Sbjct: 685 LGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGA--RNLDLKSD 742
Query: 209 XXXGGVPD--YNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAI--QGVNVVNCAHP-- 262
GGV Y + V K F GC+ V +N +++ +A+ G C P
Sbjct: 743 LYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPST 802
Query: 263 -CITQPCGS-GSCVPLYDGYKCVCTQS------CKESHLTEVMCASFDHGASFLHYLDPE 314
C C + G C+ +DG+ C C+ + C + T + F G + Y P
Sbjct: 803 TCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYI----FSKGGGQITYKWPP 858
Query: 315 IIHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGY 374
S +L + F E + ++ SSSGL D+L L IH G
Sbjct: 859 NDRPSTRAD---RLAIGFSTVQKEA---VLVRVDSSSGL---------GDYLELHIHQGK 903
Query: 375 AHVMYXXXXXXXXXXXXQTKINNGVWHRLTVHRN 408
V + IN+G +H + R+
Sbjct: 904 IGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRS 937
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 125/295 (42%), Gaps = 55/295 (18%)
Query: 110 LTIVFKAIEPNGILLYN----GHRADGVG------DFIALYLNDRYVDFTFDLGTGAATL 159
++ F+ EPNG++L++ H+ D DF A+ + D ++ D+G+G +
Sbjct: 221 ISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKI 280
Query: 160 RS-SNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGVPD-- 216
++ ++ GEW+ + R GR + V+ + +PG GG+P+
Sbjct: 281 KALQKKVNDGEWYHVDFQRDGRSGTISVNTL-RTPYTAPGESEILDLDDELYLGGLPENK 339
Query: 217 YNIVSP----KVKIKSSFIGCIQKVLINNHELNILGEA-IQGVNVV------NCAHPCIT 265
+V P + ++GCI+ + I+ +I A +Q V A PC++
Sbjct: 340 AGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLS 399
Query: 266 QPC-GSGSCVPLYDGYKCVCT------QSCKESHLTEVMCASFDHGASFLHYLDPEIIHS 318
PC +G C ++ Y C C+ +SC+ E S+D G+ F+ P ++H+
Sbjct: 400 NPCKNNGMCRDGWNRYVCDCSGTGYLGRSCER----EATVLSYD-GSMFMKIQLPVVMHT 454
Query: 319 SGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNG 373
++ +R ++ + G+++ T S S D L L + G
Sbjct: 455 EAE------------------DVSLRFRSQRAYGILMATTSRDSADTLRLELDAG 491
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 86 VPQFNGSSYLRYQGLGEQYLSLLD-LTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDR 144
+ F GS Y Y S D +T+ FK ++ NG++L+ G A D++ L L +
Sbjct: 8 IATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSA----DYVNLALKNG 63
Query: 145 YVDFTFDLGTGA--ATLRSSN-PISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFT 201
V +LG+GA A + N + WH +++TR R + VD ++ + +T
Sbjct: 64 AVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYT 123
Query: 202 QXXXXXXXXXGGVPDYNIVSPKVKIKSSFIGCIQKVLINNHELNI 246
GG P + P + ++F+GC+++V+ N+++ +
Sbjct: 124 MLGSDDFFYVGGSPSTADL-PGSPVSNNFMGCLKEVVYKNNDVRL 167
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 33/170 (19%)
Query: 36 KGRSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPL-GFTGDLCQTRLDLQVPQFNGSSY 94
+G S C ED C+ G C+ C C + F+G LC G++Y
Sbjct: 798 EGPSTTCQEDSCSNQ-----GVCLQQWDGFSCDCSMTSFSGPLCNDP---------GTTY 843
Query: 95 LRYQGLGE---------QYLSLLD-LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYL 141
+ +G G+ + + D L I F ++ +L+ R D G+GD++ L++
Sbjct: 844 IFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLV----RVDSSSGLGDYLELHI 899
Query: 142 NDRYVDFTFDLGTGAATLRSSNPI-SLGEWHKLRLTRTGRHAYLQVDRFP 190
+ + F++GT + SN I + G++H +R TR+G +A LQVD +P
Sbjct: 900 HQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWP 949
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 64/174 (36%), Gaps = 37/174 (21%)
Query: 341 IDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGYAHVMYXXXXXXXXXXXXQT--KINNG 398
I + KT +GL+L TG +S D++ L + NG ++ K N+
Sbjct: 33 ITLSFKTLQRNGLMLHTG--KSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDN 90
Query: 399 VWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSMQSIS 458
WH + V RN +Q I +D + +
Sbjct: 91 AWHDVKVTRNL--------------------------------RQVTISVDGILTTTGYT 118
Query: 459 GGKFEQLNTDSGLYVGGVEDIEELTRSKYHHSFKGWISNLILSNDYQVKLPLSR 512
+ L +D YVGG +L S ++F G + ++ N+ V+L LSR
Sbjct: 119 QEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNN-DVRLELSR 171
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 136/334 (40%), Gaps = 43/334 (12%)
Query: 92 SSYLRYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFD 151
SSY+ L Q + + L FK +G++LYN DG DFI + L Y+ + FD
Sbjct: 14 SSYVALATL--QAYTSMHLFFQFKTTSLDGLILYN--SGDG-NDFIVVELVKGYLHYVFD 68
Query: 152 LGTGAATLR--SSNPISLGEWHKLRLTR-TGRHAYLQVDRFPSSQILSPGPFTQXXXXXX 208
LG GA ++ S+ P++ +WH + ++R T +++D ++QI +
Sbjct: 69 LGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGA--RNLDLKSD 126
Query: 209 XXXGGVPD--YNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAI--QGVNVVNCAHP-- 262
GGV Y + V K F GC+ V +N +++ +A+ G C P
Sbjct: 127 LYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPST 186
Query: 263 -CITQPCGS-GSCVPLYDGYKCVCTQS------CKESHLTEVMCASFDHGASFLHYLDPE 314
C C + G C+ +DG+ C C+ + C + T + F G + Y P
Sbjct: 187 TCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYI----FSKGGGQITYKWPP 242
Query: 315 IIHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGY 374
S +L + F E + ++ SSSGL D+L L IH G
Sbjct: 243 NDRPSTRAD---RLAIGFSTVQKEA---VLVRVDSSSGL---------GDYLELHIHQGK 287
Query: 375 AHVMYXXXXXXXXXXXXQTKINNGVWHRLTVHRN 408
V + IN+G +H + R+
Sbjct: 288 IGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRS 321
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 33/170 (19%)
Query: 36 KGRSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPL-GFTGDLCQTRLDLQVPQFNGSSY 94
+G S C ED C+ G C+ C C + F+G LC G++Y
Sbjct: 182 EGPSTTCQEDSCSNQ-----GVCLQQWDGFSCDCSMTSFSGPLCNDP---------GTTY 227
Query: 95 LRYQGLGE---------QYLSLLD-LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYL 141
+ +G G+ + + D L I F ++ +L+ R D G+GD++ L++
Sbjct: 228 IFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLV----RVDSSSGLGDYLELHI 283
Query: 142 NDRYVDFTFDLGTGAATLRSSNPI-SLGEWHKLRLTRTGRHAYLQVDRFP 190
+ + F++GT + SN I + G++H +R TR+G +A LQVD +P
Sbjct: 284 HQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWP 333
>pdb|3V64|A Chain A, Crystal Structure Of Agrin And Lrp4
pdb|3V64|B Chain B, Crystal Structure Of Agrin And Lrp4
pdb|3V65|A Chain A, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|C Chain C, Crystal Structure Of Agrin And Lrp4 Complex
Length = 191
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 15/192 (7%)
Query: 84 LQVPQFNGSSYLRY-----------QGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADG 132
L+ F+G +Y+ Y + E+ L + + G++L+ G A+
Sbjct: 2 LETLAFDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGKAAER 61
Query: 133 VGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSS 192
D++AL + D ++ ++DLG+ LRS+ ++ W ++R R R LQV
Sbjct: 62 -ADYMALAIVDGHLQLSYDLGSQPVVLRSTVKVNTNRWLRIRAHREHREGSLQVGNEAPV 120
Query: 193 QILSPGPFTQXXXXXXXXXGGVPDYNI--VSPKVKIKSSFIGCIQKVLINNHELNILGEA 250
SP TQ GG+ + PK + F+GC++ V++ + +L++L +A
Sbjct: 121 TGSSPLGATQLDTDGALWLGGLQKLPVGQALPKA-YGTGFVGCLRDVVVGHRQLHLLEDA 179
Query: 251 IQGVNVVNCAHP 262
+ + C P
Sbjct: 180 VTKPELRPCPTP 191
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 74/181 (40%), Gaps = 42/181 (23%)
Query: 300 SFDHGASFLHYLDPEIIHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTG- 358
+FD G +++ YL+ +I S ++ + + F + +R T ++ GL+LW G
Sbjct: 6 AFD-GRTYIEYLN-AVIES----ELTNEIPAEKALQSNHFELSLR--TEATQGLVLWIGK 57
Query: 359 SSQSKDFLALGIHNGYAHVMYXXXXXXXXXXXXQTKINNGVWHRLTVHRNFMVVMHGSSH 418
+++ D++AL I +G+ + Y K+N W R+ HR
Sbjct: 58 AAERADYMALAIVDGHLQLSYDLGSQPVVLRST-VKVNTNRWLRIRAHRE---------- 106
Query: 419 TRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSMQSISGGKFEQLNTDSGLYVGGVED 478
HR G +++ + + S QL+TD L++GG++
Sbjct: 107 -------------------HREGS---LQVGNEAPVTGSSPLGATQLDTDGALWLGGLQK 144
Query: 479 I 479
+
Sbjct: 145 L 145
>pdb|2H0B|A Chain A, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|B Chain B, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|C Chain C, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|D Chain D, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
Length = 184
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 11/166 (6%)
Query: 86 VPQFNGSSYLRYQGLGEQYL--SLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLND 143
+ F GS Y Y L + + S ++T+ FK ++ NG+ L+ G A D++ L L +
Sbjct: 7 IATFKGSEYFCYD-LSQNPIQSSSDEITLSFKTLQRNGLXLHTGKSA----DYVNLALKN 61
Query: 144 RYVDFTFDLGTGA--ATLRSSN-PISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPF 200
V +LG+GA A + N + WH +++TR R + VD ++ + +
Sbjct: 62 GAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDY 121
Query: 201 TQXXXXXXXXXGGVPDYNIVSPKVKIKSSFIGCIQKVLINNHELNI 246
T GG P + P + ++F GC+++V+ N+++ +
Sbjct: 122 TXLGSDDFFYVGGSPSTADL-PGSPVSNNFXGCLKEVVYKNNDVRL 166
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 63/174 (36%), Gaps = 37/174 (21%)
Query: 341 IDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGYAHVMYXXXXXXXXXXXXQT--KINNG 398
I + KT +GL L TG +S D++ L + NG ++ K N+
Sbjct: 32 ITLSFKTLQRNGLXLHTG--KSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDN 89
Query: 399 VWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSMQSIS 458
WH + V RN +Q I +D + +
Sbjct: 90 AWHDVKVTRNL--------------------------------RQVTISVDGILTTTGYT 117
Query: 459 GGKFEQLNTDSGLYVGGVEDIEELTRSKYHHSFKGWISNLILSNDYQVKLPLSR 512
+ L +D YVGG +L S ++F G + ++ N+ V+L LSR
Sbjct: 118 QEDYTXLGSDDFFYVGGSPSTADLPGSPVSNNFXGCLKEVVYKNN-DVRLELSR 170
>pdb|2JD4|A Chain A, Mouse Laminin Alpha1 Chain, Domains Lg4-5
pdb|2JD4|B Chain B, Mouse Laminin Alpha1 Chain, Domains Lg4-5
Length = 383
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 2/138 (1%)
Query: 108 LDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISL 167
L + + + +G++ Y H+ D+ L L + + F FDLG G + +S
Sbjct: 45 LQVQLSIRTFASSGLIYYVAHQNQM--DYATLQLQEGRLHFMFDLGKGRTKVSHPALLSD 102
Query: 168 GEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGVPDYNIVSPKVKIK 227
G+WH ++ R A++ VD S + G T GG+P + I
Sbjct: 103 GKWHTVKTEYIKRKAFMTVDGQESPSVTVVGKATTLDVERKLYLGGLPSHYRARNIGTIT 162
Query: 228 SSFIGCIQKVLINNHELN 245
S CI ++++N +L+
Sbjct: 163 HSIPACIGEIMVNGQQLD 180
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 16/160 (10%)
Query: 89 FNGSSYLRYQGLGEQYLSLLDLTIVFKAIEPNGILL-YNGHRADGVGDFIALYLNDRYVD 147
F GS Y G + L +T+ F+ NG+LL + + D +G L + D V
Sbjct: 203 FEGSGYAALVKEGYKVRLDLQITLEFRTTSKNGVLLGISSAKVDAIG----LEIVDGKVL 258
Query: 148 FTFDLGTGAATL----RSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQX 203
F + G G T R++ + G+WH L+ ++ L VD + + + P T
Sbjct: 259 FHVNNGAGRITATYQPRAARALCDGKWHTLQAHKSKHRIVLTVD---GNSVRAESPHTHS 315
Query: 204 XXXXXXX---XGGVPDYNIVSPKVKIKSSFIGCIQKVLIN 240
GG P + I + ++SF GC++ + ++
Sbjct: 316 TSADTNDPIYVGGYPAH-IKQNSLSSRASFRGCVRNLRLS 354
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 338 EFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGYAHVMYXXXXXXXXXXXXQTKINN 397
+ + I+T +SSGLI + D+ L + G H M+ +++
Sbjct: 44 RLQVQLSIRTFASSGLIYYVAHQNQMDYATLQLQEGRLHFMFDLGKGRTKVSHPAL-LSD 102
Query: 398 GVWHRLTVH----RNFMVV 412
G WH + + FM V
Sbjct: 103 GKWHTVKTEYIKRKAFMTV 121
>pdb|3BOP|A Chain A, Structure Of Mouse Beta-neurexin 2d4
pdb|3BOP|B Chain B, Structure Of Mouse Beta-neurexin 2d4
pdb|3BOP|C Chain C, Structure Of Mouse Beta-neurexin 2d4
Length = 175
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 130 ADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPI-SLGEWHKLRLTRTGRHAYLQVDR 188
A G+GD++ L+++ V F++GT T+ N I S G++H +R TR+G +A LQVD
Sbjct: 49 ASGLGDYLQLHIDQGTVGVIFNVGTDDITIDEPNAIVSDGKYHVVRFTRSGGNATLQVDS 108
Query: 189 FPSSQ 193
+P ++
Sbjct: 109 WPVNE 113
>pdb|2WJS|A Chain A, Crystal Structure Of The Lg1-3 Region Of The Laminin
Alpha2 Chain
Length = 608
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 10/167 (5%)
Query: 88 QFNGSSYLRYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVD 147
QF+G Y Y ++ + F+ + +L+Y R + DF+++ L+D +V
Sbjct: 207 QFDGEGYALVSRPIRWYPNISTVMFKFRTFSSSALLMYLATR--DLKDFMSVELSDGHVK 264
Query: 148 FTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFT------ 201
++DLG+G ++ S+ + G+W L+R + A + + S+Q + +
Sbjct: 265 VSYDLGSGMTSVVSNQNHNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGNNFG 324
Query: 202 -QXXXXXXXXXGGVPDYNIVSPKVKIKSSFIGCIQKVLINNHELNIL 247
GG+P + P+V +K + GC++ + I+ NIL
Sbjct: 325 LDLKADDKIYFGGLPTLRNLRPEVNVK-KYSGCLKDIEISRTPYNIL 370
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 340 NIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGYAHVMYXXXXXXXXXXXXQTKINNGV 399
NI + +KT+ + L+ + GS++ DFLA+ + G ++ I++
Sbjct: 34 NIVVHVKTAVADNLLFYLGSAKFIDFLAIEMRKGKVSFLWDVGSGVGRVEYPDLTIDDSY 93
Query: 400 WHRLTVHR 407
W+R+ R
Sbjct: 94 WYRIEASR 101
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 34/163 (20%)
Query: 343 MRIKTSSSSGLILWTGSSQSKDFLALGIHNGYAHVMYXXXXXXXXXXXXQTKINNGVWHR 402
+ +T SSS L+++ + KDF+++ + +G+ V Y Q N+G W
Sbjct: 231 FKFRTFSSSALLMYLATRDLKDFMSVELSDGHVKVSYDLGSGMTSVVSNQNH-NDGKW-- 287
Query: 403 LTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYS---MQSISG 459
K ++ R+ + ++ ID++ S SG
Sbjct: 288 ---------------------------KAFTLSRIQKQANISIVDIDSNQEENVATSSSG 320
Query: 460 GKFE-QLNTDSGLYVGGVEDIEELTRSKYHHSFKGWISNLILS 501
F L D +Y GG+ + L + G + ++ +S
Sbjct: 321 NNFGLDLKADDKIYFGGLPTLRNLRPEVNVKKYSGCLKDIEIS 363
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 135 DFIALYLNDRYVDFTFDLGTGAATLRSSN-PISLGEWHKLRLTRTGRHAYLQV 186
DF+A+ + V F +D+G+G + + I W+++ +RTGR+ + V
Sbjct: 58 DFLAIEMRKGKVSFLWDVGSGVGRVEYPDLTIDDSYWYRIEASRTGRNGSISV 110
>pdb|3MW4|A Chain A, Crystal Structure Of Beta-Neurexin 3 Without The Splice
Insert 4
pdb|3MW4|B Chain B, Crystal Structure Of Beta-Neurexin 3 Without The Splice
Insert 4
pdb|3MW4|C Chain C, Crystal Structure Of Beta-Neurexin 3 Without The Splice
Insert 4
Length = 178
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 110 LTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSS-NPISLG 168
L + F +GIL+ A G+GDF+ L++ + F++GT +++ P++ G
Sbjct: 33 LAVGFSTTVKDGILVRI-DSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDG 91
Query: 169 EWHKLRLTRTGRHAYLQVDRFPSSQ 193
++H +R TR G +A LQVD +P ++
Sbjct: 92 KYHVVRFTRNGANATLQVDNWPVNE 116
>pdb|3MW3|A Chain A, Crystal Structure Of Beta-Neurexin 2 With The Splice
Insert 4
Length = 208
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 130 ADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPI-SLGEWHKLRLTRTGRHAYLQVDR 188
A G+GD++ L+++ V F++GT T+ N I S G++H +R TR+G +A LQVD
Sbjct: 52 ASGLGDYLQLHIDQGTVGVIFNVGTDDITIDEPNAIVSDGKYHVVRFTRSGGNATLQVDS 111
Query: 189 FPSSQILSPGPF 200
+P ++ G F
Sbjct: 112 WPVNERYPAGNF 123
>pdb|2R1D|A Chain A, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|B Chain B, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|C Chain C, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|D Chain D, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|E Chain E, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|F Chain F, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|G Chain G, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|H Chain H, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|I Chain I, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|W Chain W, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
Length = 226
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 110 LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPI- 165
L I F ++ +L+ R D G+GD++ L+++ + F++GT + SN I
Sbjct: 67 LAIGFSTVQKEAVLV----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 122
Query: 166 SLGEWHKLRLTRTGRHAYLQVDRFP 190
+ G++H +R TR+G +A LQVD +P
Sbjct: 123 NDGKYHVVRFTRSGGNATLQVDSWP 147
>pdb|3BIW|E Chain E, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|F Chain F, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|G Chain G, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|H Chain H, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
Length = 243
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 110 LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPI- 165
L I F ++ +L+ R D G+GD++ L+++ + F++GT + SN I
Sbjct: 81 LAIGFSTVQKEAVLV----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 136
Query: 166 SLGEWHKLRLTRTGRHAYLQVDRFP 190
+ G++H +R TR+G +A LQVD +P
Sbjct: 137 NDGKYHVVRFTRSGGNATLQVDSWP 161
>pdb|3VKF|C Chain C, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|D Chain D, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 181
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 110 LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPI- 165
L I F ++ +L+ R D G+GD++ L+++ + F++GT + SN I
Sbjct: 32 LAIGFSTVQKEAVLV----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 87
Query: 166 SLGEWHKLRLTRTGRHAYLQVDRFP 190
+ G++H +R TR+G +A LQVD +P
Sbjct: 88 NDGKYHVVRFTRSGGNATLQVDSWP 112
>pdb|1C4R|A Chain A, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|B Chain B, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|C Chain C, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|D Chain D, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|E Chain E, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|F Chain F, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|G Chain G, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|H Chain H, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
Length = 182
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 110 LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPI- 165
L I F ++ +L+ R D G+GD++ L+++ + F++GT + SN I
Sbjct: 33 LAIGFSTVQKEAVLV----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 88
Query: 166 SLGEWHKLRLTRTGRHAYLQVDRFP 190
+ G++H +R TR+G +A LQVD +P
Sbjct: 89 NDGKYHVVRFTRSGGNATLQVDSWP 113
>pdb|2WQZ|C Chain C, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2WQZ|D Chain D, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2XB6|C Chain C, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
pdb|2XB6|D Chain D, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
Length = 179
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 110 LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPI- 165
L I F ++ +L+ R D G+GD++ L+++ + F++GT + SN I
Sbjct: 34 LAIGFSTVQKEAVLV----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 89
Query: 166 SLGEWHKLRLTRTGRHAYLQVDRFP 190
+ G++H +R TR+G +A LQVD +P
Sbjct: 90 NDGKYHVVRFTRSGGNATLQVDSWP 114
>pdb|3B3Q|E Chain E, Crystal Structure Of A Synaptic Adhesion Complex
pdb|3B3Q|F Chain F, Crystal Structure Of A Synaptic Adhesion Complex
Length = 197
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 110 LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPI- 165
L I F ++ +L+ R D G+GD++ L+++ + F++GT + SN I
Sbjct: 41 LAIGFSTVQKEAVLV----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 96
Query: 166 SLGEWHKLRLTRTGRHAYLQVDRFP 190
+ G++H +R TR+G +A LQVD +P
Sbjct: 97 NDGKYHVVRFTRSGGNATLQVDSWP 121
>pdb|3BOD|A Chain A, Structure Of Mouse Beta-Neurexin 1
Length = 178
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 110 LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPI- 165
L I F ++ +L+ R D G+GD++ L+++ + F++GT + SN I
Sbjct: 33 LAIGFSTVQKEAVLV----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 88
Query: 166 SLGEWHKLRLTRTGRHAYLQVDRFP 190
+ G++H +R TR+G +A LQVD +P
Sbjct: 89 NDGKYHVVRFTRSGGNATLQVDSWP 113
>pdb|2R1B|A Chain A, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
pdb|2R1B|B Chain B, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
Length = 220
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 110 LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPI- 165
L I F ++ +L+ R D G+GD++ L+++ + F++GT + SN I
Sbjct: 39 LAIGFSTVQKEAVLV----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 94
Query: 166 SLGEWHKLRLTRTGRHAYLQVDRFP 190
+ G++H +R TR+G +A LQVD +P
Sbjct: 95 NDGKYHVVRFTRSGGNATLQVDSWP 119
>pdb|3MW2|A Chain A, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
pdb|3MW2|B Chain B, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
Length = 207
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 110 LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPI- 165
L I F ++ +L+ R D G+GD++ L+++ + F++GT + SN I
Sbjct: 32 LAIGFSTVQKEAVLV----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 87
Query: 166 SLGEWHKLRLTRTGRHAYLQVDRFP 190
+ G++H +R TR+G +A LQVD +P
Sbjct: 88 NDGKYHVVRFTRSGGNATLQVDSWP 112
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 19 FRHRWDAWIQLNDGN----KIKGRSKEC---LEDKCNKTPCEHGGKCITTPGSSYCLCPL 71
F H+ + W + + KG C C PC HGG+C+ G C CP+
Sbjct: 13 FFHKNEIWYRTEQAAVARCQCKGPDAHCQRLASQACRTNPCLHGGRCLEVEGHRLCHCPV 72
Query: 72 GFTGDLC 78
G+TG C
Sbjct: 73 GYTGPFC 79
>pdb|1DYK|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair
Length = 394
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 134 GDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQ 193
DF + L + + F++DLG+G + I+ G+WHK+++ R + L VD SSQ
Sbjct: 83 ADFATVQLRNGFPYFSYDLGSGDTSTMIPTKINDGQWHKIKIVRVKQEGILYVDD-ASSQ 141
Query: 194 ILSPGPFTQXXXXXXXXXGGVPDYNIVSPKV-KIKSSFIGCIQKVLINNHELNI 246
+SP GG+P N + ++ + S GC++ + + +++
Sbjct: 142 TISPKKADILDVVGILYVGGLP-INYTTRRIGPVTYSLDGCVRNLHMEQAPVDL 194
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 338 EFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGYAHVMYXXXXXXXXXXXXQTKINN 397
I++ ++T + SGL+ + DF + + NG+ + Y TKIN+
Sbjct: 58 RLTIELEVRTEAESGLLFYMARINHADFATVQLRNGFPYFSY-DLGSGDTSTMIPTKIND 116
Query: 398 GVWHRLTVHR----NFMVVMHGSSHTRSNKSSKI 427
G WH++ + R + V SS T S K + I
Sbjct: 117 GQWHKIKIVRVKQEGILYVDDASSQTISPKKADI 150
>pdb|2R16|A Chain A, Crystal Structure Of Bovine Neurexin 1 Alpha LnsLG DOMAIN
4 (With No Splice Insert)
Length = 182
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 86 VPQFNGSSYLRYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRY 145
V ++GS +++ Q + D+++ F++ GIL+ R D + L L+
Sbjct: 7 VLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSA--DTLRLELDAGR 64
Query: 146 VDFTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYLQVD 187
V T +LG G TL + ++ EWH +R+ R G+ L VD
Sbjct: 65 VKLTVNLGKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVD 106
>pdb|1OKQ|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair, Ca1 Site Mutant
Length = 394
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 136 FIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQIL 195
F + L + + F++DLG+G + I+ G+WHK+++ R + L VD SSQ +
Sbjct: 85 FATVQLRNGFPYFSYDLGSGDTSTMIPTKINDGQWHKIKIVRVKQEGILYVDD-ASSQTI 143
Query: 196 SPGPFTQXXXXXXXXXGGVPDYNIVSPKV-KIKSSFIGCIQKVLINNHELNI 246
SP GG+P N + ++ + S GC++ + + +++
Sbjct: 144 SPKKADILAVVGILYVGGLP-INYTTRRIGPVTYSLDGCVRNLHMEQAPVDL 194
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 338 EFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGYAHVMYXXXXXXXXXXXXQTKINN 397
I++ ++T + SGL+ + F + + NG+ + Y TKIN+
Sbjct: 58 RLTIELEVRTEAESGLLFYMARINHAAFATVQLRNGFPYFSY-DLGSGDTSTMIPTKIND 116
Query: 398 GVWHRLTVHR----NFMVVMHGSSHTRSNKSSKI 427
G WH++ + R + V SS T S K + I
Sbjct: 117 GQWHKIKIVRVKQEGILYVDDASSQTISPKKADI 150
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRL 82
D+C +PC H G+C+ C CP GFTG LCQ L
Sbjct: 84 DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDL 121
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 45 DKCN--KTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQV--PQFNGSSYLRYQG 99
D+C+ PCEH GKCI T GS C C G+TG C+ ++ V P N ++ L G
Sbjct: 6 DECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIG 64
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
D+C +PC H G+C+ C CP GFTG LCQ
Sbjct: 82 DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 45 DKCN--KTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQV--PQFNGSSYLRYQG 99
D+C+ PCEH GKCI T GS C C G+TG C+ ++ V P N ++ L G
Sbjct: 4 DECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIG 62
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 24/98 (24%)
Query: 9 ILDDWNTVRVFRHRWDAWIQLNDGNKIKGRSKECLEDKCNKTPCEHGGKCITTPGSSYCL 68
I D ++F WI +DG D+C +PC++GG C S C
Sbjct: 30 IFKDAERTKLF------WISYSDG------------DQCASSPCQNGGSCKDQLQSYICF 71
Query: 69 CPLGFTGDLCQTRLDLQVPQFNGSSYLRYQGLGEQYLS 106
C F G C+T D Q+ N + G EQY S
Sbjct: 72 CLPAFEGRNCETHKDDQLICVNEN------GGCEQYCS 103
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 24/100 (24%)
Query: 7 QVILDDWNTVRVFRHRWDAWIQLNDGNKIKGRSKECLEDKCNKTPCEHGGKCITTPGSSY 66
+ I D ++F WI +DG D+C +PC++GG C S
Sbjct: 28 RXIFKDAERTKLF------WISYSDG------------DQCASSPCQNGGSCKDQLQSYI 69
Query: 67 CLCPLGFTGDLCQTRLDLQVPQFNGSSYLRYQGLGEQYLS 106
C C F G C+T D Q+ N + G EQY S
Sbjct: 70 CFCLPAFEGRNCETHKDDQLICVNEN------GGCEQYCS 103
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 36.2 bits (82), Expect = 0.044, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 45 DKCNKTPCEHGGKCIT--TPGSSYCLCPLGFTGDLCQTRLDL 84
D C+ PCE+GG C+ GS C CP GFT C + +++
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEV 42
Score = 32.0 bits (71), Expect = 0.78, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTR 81
++C PC++GG C + C CP F G CQ +
Sbjct: 98 NECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQYK 134
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 47 CNKTPCEHGGKCITTP---GSSY----CLCPLGFTGDLCQTRLD 83
C PC +GG C + G ++ C CP GF G CQ ++
Sbjct: 55 CTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNIN 98
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 24/100 (24%)
Query: 7 QVILDDWNTVRVFRHRWDAWIQLNDGNKIKGRSKECLEDKCNKTPCEHGGKCITTPGSSY 66
+ I D ++F WI +DG D+C +PC++GG C S
Sbjct: 28 RXIFKDAXRTKLF------WISYSDG------------DQCASSPCQNGGSCKDQLQSYI 69
Query: 67 CLCPLGFTGDLCQTRLDLQVPQFNGSSYLRYQGLGEQYLS 106
C C F G C+T D Q+ N + G EQY S
Sbjct: 70 CFCLPAFEGRNCETHKDDQLICVNEN------GGCEQYCS 103
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 35.8 bits (81), Expect = 0.057, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
D+C +PC++ GKC G C C GF G C+
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 37
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 24/100 (24%)
Query: 7 QVILDDWNTVRVFRHRWDAWIQLNDGNKIKGRSKECLEDKCNKTPCEHGGKCITTPGSSY 66
+ I D ++F WI +DG D+C +PC++GG C S
Sbjct: 28 RXIFKDAXRTKLF------WISYSDG------------DQCASSPCQNGGSCKDQLQSYI 69
Query: 67 CLCPLGFTGDLCQTRLDLQVPQFNGSSYLRYQGLGEQYLS 106
C C F G C+T D Q+ N + G EQY S
Sbjct: 70 CFCLPAFEGRNCETHKDDQLICVNEN------GGCEQYCS 103
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating
Basic Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 35.4 bits (80), Expect = 0.073, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
D+C +PC++ GKC G C C GF G C+
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 77
>pdb|1H30|A Chain A, C-Terminal Lg Domain Pair Of Human Gas6
pdb|2C5D|A Chain A, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|B Chain B, Structure Of A Minimal Gas6-Axl Complex
Length = 422
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 12/152 (7%)
Query: 114 FKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNP-ISLGEWHK 172
F+ +P GILL+ G D +AL + ++ G + SS P I+ G W
Sbjct: 69 FRTFDPEGILLFAGGHQDSTWIVLALRAGRLELQLRYN---GVGRVTSSGPVINHGMWQT 125
Query: 173 LRLTRTGRHAYLQVDRFPSSQILSPGPFTQXXXX---XXXXXGGVP--DYNIVSPKVKIK 227
+ + R+ ++V+R +I G Q GG+P + ++V P I
Sbjct: 126 ISVEELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQP---IN 182
Query: 228 SSFIGCIQKVLINNHELNILGEAIQGVNVVNC 259
GC++ N E + E ++ + C
Sbjct: 183 PRLDGCMRSWNWLNGEDTTIQETVKVNTRMQC 214
>pdb|1G1Q|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1R|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1S|A Chain A, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
pdb|1G1S|B Chain B, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
Length = 162
Score = 35.4 bits (80), Expect = 0.080, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 30 NDGNKIKGRSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
ND + +K + C C C G+C+ T G+ C C GF G C+
Sbjct: 105 NDEHCLKKKHALCYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 154
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
D+C PC +GG C S C C +GF G C+
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCE 83
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 129 RADGVGDFIALY--LNDRYVDFTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYL 184
R GV F+ALY DR+ D +F G L +S P G+W + R TG Y+
Sbjct: 2 RGSGVTLFVALYDYQADRWTDLSFHKGEKFQILDASPP---GDWWEARSLTTGETGYI 56
>pdb|3U7U|G Chain G, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|H Chain H, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|I Chain I, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|J Chain J, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|K Chain K, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
pdb|3U7U|L Chain L, Crystal Structure Of Extracellular Region Of Human
Epidermal Growth Factor Receptor 4 In Complex With
Neuregulin-1 Beta
Length = 55
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 41 ECLEDKCNKTPCEHGGKC-----ITTPGSSYCLCPLGFTGDLCQ 79
+C E + KT C +GG+C ++ P C CP FTGD CQ
Sbjct: 7 KCAEKE--KTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQ 48
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And
Tgf-A
Length = 39
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
D+C PC +GG C S C CP GF G C+
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 28/68 (41%)
Query: 12 DWNTVRVFRHRWDAWIQLNDGNKIKGRSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPL 71
D + V ++ R ND K + C C T C G+C+ T + C C
Sbjct: 87 DEDCVEIYIKREKDVGMWNDERCSKKKLALCYTAACTNTSCSGHGECVETINNYTCKCDP 146
Query: 72 GFTGDLCQ 79
GF+G C+
Sbjct: 147 GFSGLKCE 154
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 28/68 (41%)
Query: 12 DWNTVRVFRHRWDAWIQLNDGNKIKGRSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPL 71
D + V ++ R ND K + C C T C G+C+ T + C C
Sbjct: 87 DEDCVEIYIKREKDVGMWNDERCSKKKLALCYTAACTNTSCSGHGECVETINNYTCKCDP 146
Query: 72 GFTGDLCQ 79
GF+G C+
Sbjct: 147 GFSGLKCE 154
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 38 RSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLC 78
++C KC + PC +GGKCI G S C C G+ GDLC
Sbjct: 238 EGEQCEISKCPQ-PCRNGGKCI---GKSKCKCSKGYQGDLC 274
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNGSSYLRYQGLGEQY 104
D+C +PC++GG C S C C F G C+T D Q+ N G EQY
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVN------ENGGCEQY 60
Query: 105 LS 106
S
Sbjct: 61 CS 62
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNGSSYLRYQGLGEQY 104
D+C +PC++GG C S C C F G C+T D Q+ N + G EQY
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNEN------GGCEQY 54
Query: 105 LS 106
S
Sbjct: 55 CS 56
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr132747
Length = 195
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
D+C +PC++ GKC G C C GF G C+
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 77
>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, 20 Structures
pdb|1F7M|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, Minimized Average Structure
pdb|1FF7|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, 20 Structures
pdb|1FFM|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, Minimized Average
Structure
Length = 46
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
D+C +PC++GG C S C C F G C+T D
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKD 42
>pdb|1HAE|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain,
Nmr, 20 Structures
pdb|1HAF|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain,
Nmr, Minimized Average Structure
Length = 63
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 41 ECLEDKCNKTPCEHGGKC-----ITTPGSSYCLCPLGFTGDLCQTRLDLQV 86
+C E + KT C +GG+C ++ P C C GFTG C + ++V
Sbjct: 5 KCAEKE--KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKV 53
>pdb|1HRE|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
pdb|1HRF|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
Length = 67
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 41 ECLEDKCNKTPCEHGGKC-----ITTPGSSYCLCPLGFTGDLCQTRLDLQV 86
+C E + KT C +GG+C ++ P C C GFTG C + ++V
Sbjct: 7 KCAEKE--KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKV 55
>pdb|3FVC|A Chain A, Crystal Structure Of A Trimeric Variant Of The
Epstein-Barr Virus Glycoprotein B
Length = 663
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 14/76 (18%)
Query: 66 YCLCPLGFTGDLCQTRLDLQVPQFNGSSYLRYQGLGEQYLSLLDLTIV--------FKAI 117
+ +C L GDL + D+Q P F G+ +GL L + I+ + I
Sbjct: 26 FRVCELSSHGDLFRFSSDIQCPSF-GTRENHTEGL----LMVFKDNIIPYSFKVRSYTKI 80
Query: 118 EPNGILLYNGHRADGV 133
N IL+YNGHRAD V
Sbjct: 81 VTN-ILIYNGHRADSV 95
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
D+C +PC++ GKC G C C GF G C+
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 82
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 45 DKCNKTP--CEHGGKCITTPGSSYCLCPLGF 73
D+C K P C+HG +CI T GS C CP G+
Sbjct: 6 DEC-KEPDVCKHG-QCINTDGSYRCECPFGY 34
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 247 LGEAIQGVNVVNCAHPCITQPCGSGSCVPLYDGYKCVCTQ 286
G + G V+ + PCG+G+C + G++C C +
Sbjct: 32 FGYILAGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEE 71
>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
Length = 94
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 46 KCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNGSSYLRYQGLGEQYL 105
+C +PC++GG C S C C F G C+T D Q+ N + G EQY
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNEN------GGCEQYC 54
Query: 106 S 106
S
Sbjct: 55 S 55
>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
Length = 104
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 46 KCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNGSSYLRYQGLGEQYL 105
+C +PC++GG C S C C F G C+T D Q+ N G EQY
Sbjct: 1 QCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVN------ENGGCEQYC 54
Query: 106 S 106
S
Sbjct: 55 S 55
>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr,
23 Structures
Length = 41
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQT 80
D+C +PC++GG C S C C F G C+T
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCET 39
>pdb|3CFW|A Chain A, L-selectin Lectin And Egf Domains
Length = 164
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 30 NDGNKIKGRSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
ND K ++ C C C G+C+ + C C +G+ G CQ
Sbjct: 105 NDDACHKLKAALCYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
D+C PC +GG C S C C +GF G C+
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCE 83
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 252 QGVNVVNCAHPCITQPC-GSGSCVPL-YDGYKCVCTQS 287
Q N + HPC + PC G C+ +D YKC CT++
Sbjct: 16 QAANHHHHHHPCCSNPCQNRGECMSTGFDQYKCDCTRT 53
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
++C PC++ C+ G C+C G+ G C+
Sbjct: 3 NECISNPCQNDATCLDQIGEFQCICMPGYEGVYCE 37
>pdb|2JSC|A Chain A, Nmr Structure Of The Cadmium Metal-Sensor Cmtr From
Mycobacterium Tuberculosis
pdb|2JSC|B Chain B, Nmr Structure Of The Cadmium Metal-Sensor Cmtr From
Mycobacterium Tuberculosis
Length = 118
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 234 IQKVLINNHELNILGEAIQGVNVVNCAHPCITQPCGSGSCVPL 276
++ L ++H LGE +Q V V+ PC+ + SG V +
Sbjct: 73 VRYALADSHLARALGELVQVVLAVDTDQPCVAERAASGEAVEM 115
>pdb|1QHW|A Chain A, Purple Acid Phosphatase From Rat Bone
Length = 327
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 52 CEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQ-FNGSSYLRYQGLGEQYLSLLDL 110
EHG L G T LC +LQ Q NG Y+ G G + +D
Sbjct: 214 AEHGPTRCLVKNLRPLLAAYGVTAYLCGHDHNLQYLQDENGVGYV-LSGAG----NFMDP 268
Query: 111 TIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNP 164
++ + PNG L ++ D +G F + + + + T+ +G + ++S P
Sbjct: 269 SVRHQRKVPNGYLRFHYGSEDSLGGFTYVEIGSKEMSITYVEASGKSLFKTSLP 322
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
D+C +PC++ GKC G C C GF G C+
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCE 38
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule,
S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
D+C +PC++ GKC G C C GF G C+
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 39
>pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7O|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
Length = 399
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 314 EIIHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHN 372
+I+ S L+ + ++H D + GYE + I + I +T S++ + +G+ N
Sbjct: 191 DIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSN 249
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 253 GVNVVNCAHPCITQPC-GSGSCVPL-YDGYKCVCTQS 287
+ + A+PC + PC G C+ +D YKC CT++
Sbjct: 11 ALGLSQAANPCCSNPCQNRGECMSTGFDQYKCDCTRT 47
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
D+C +PC++ GKC G C C GF G C+
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 37
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
D+C +PC++ GKC G C C GF G C+
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 39
>pdb|1QFC|A Chain A, Structure Of Rat Purple Acid Phosphatase
Length = 306
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 52 CEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQ-FNGSSYLRYQGLGEQYLSLLDL 110
EHG L G T LC +LQ Q NG Y+ G G + +D
Sbjct: 193 AEHGPTRCLVKNLRPLLAAYGVTAYLCGHDHNLQYLQDENGVGYV-LSGAG----NFMDP 247
Query: 111 TIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNP 164
++ + PNG L ++ D +G F + + + + T+ +G + ++S P
Sbjct: 248 SVRHQRKVPNGYLRFHYGSEDSLGGFTYVEIGSKEMSITYVEASGKSLFKTSLP 301
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-
(2-oxo-2-
Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-
(2-oxo-2-
Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2-
Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2-
Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
D+C +PC++ GKC G C C GF G C+
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 38
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 260 AHPCITQPC-GSGSCVPL-YDGYKCVCTQS 287
A+PC + PC G C+ +D YKC CT++
Sbjct: 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRT 30
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 260 AHPCITQPC-GSGSCVPL-YDGYKCVCTQS 287
A+PC + PC G C+ +D YKC CT++
Sbjct: 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRT 30
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 260 AHPCITQPC-GSGSCVPL-YDGYKCVCTQS 287
A+PC + PC G C+ +D YKC CT++
Sbjct: 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRT 30
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 260 AHPCITQPC-GSGSCVPL-YDGYKCVCTQS 287
A+PC + PC G C+ +D YKC CT++
Sbjct: 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRT 30
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 260 AHPCITQPC-GSGSCVPL-YDGYKCVCTQS 287
A+PC + PC G C+ +D YKC CT++
Sbjct: 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRT 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,502,195
Number of Sequences: 62578
Number of extensions: 689670
Number of successful extensions: 1485
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1247
Number of HSP's gapped (non-prelim): 208
length of query: 533
length of database: 14,973,337
effective HSP length: 103
effective length of query: 430
effective length of database: 8,527,803
effective search space: 3666955290
effective search space used: 3666955290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)