RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5025
(533 letters)
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus}
SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Length = 394
Score = 227 bits (581), Expect = 1e-69
Identities = 69/469 (14%), Positives = 144/469 (30%), Gaps = 108/469 (23%)
Query: 50 TPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNGSSYLRYQGLGEQYLSLLD 109
P G C+ + F + +S++ + + L
Sbjct: 15 VPTMVHGPCVAESEPALLTGSKQFG--------------LSRNSHIAIAFDDTKVKNRLT 60
Query: 110 LTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGE 169
+ + + +G+L Y DF + L + + F++DLG+G + I+ G+
Sbjct: 61 IELEVRTEAESGLLFYMARI--NHADFATVQLRNGFPYFSYDLGSGDTSTMIPTKINDGQ 118
Query: 170 WHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVKIKSS 229
WHK+++ R + L VD S I SP L + LY+GG+P + S
Sbjct: 119 WHKIKIVRVKQEGILYVDDASSQTI-SPKKADILDVVGILYVGGLPINYTTRRIGPVTYS 177
Query: 230 FIGCIQKVLINNHELNILGEAIQGVNVVNCAHPCITQPCGSG-SCVPLYDGYKCVCTQSC 288
GC++ + + ++ L + +V C + G G+K
Sbjct: 178 LDGCVRNLHMEQAPVD-LDQPTSSFHVGTCFANAESGTYFDGTGFAKAVGGFK------- 229
Query: 289 KESHLTEVMCASFDHGASFLHYLDPEIIHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTS 348
G + ++ +T+
Sbjct: 230 ----------------------------------------------VGLDLLVEFEFRTT 243
Query: 349 SSSGLILWTGSSQSKDFLALGIHNGYAHVMYNLGNGE---VLLENNQTKINNGVWHRLTV 405
+G++L S + D + + + + + G G + + NG WH++T
Sbjct: 244 RPTGVLLGVSSQKM-DGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTA 302
Query: 406 HRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSMQSISGGKFEQL 465
+ + + +D +
Sbjct: 303 KKI--------------------------------KNRLELVVDGNQVDAQSPNSASTSA 330
Query: 466 NTDSGLYVGGVEDIEELTRSKYHHSFKGWISNLILSNDYQVKLPLSRSQ 514
+T+ ++VGG + F+G I +L L+ L ++ ++
Sbjct: 331 DTNDPVFVGGFPGGLNQFGLTTNIRFRGCIRSLKLTKGTGKPLEVNFAK 379
Score = 123 bits (309), Expect = 7e-31
Identities = 50/290 (17%), Positives = 93/290 (32%), Gaps = 38/290 (13%)
Query: 2 VKSDNQVILDDWNTVRVFRHRWDAWIQLNDGNKIKGRSKECLEDKCNKTPCEHGGKCITT 61
++ W+ +++ R + + + + D + S + + GG I
Sbjct: 108 TMIPTKINDGQWHKIKIVRVKQEGILYV-DDASSQTISPKKADILDVVGILYVGGLPINY 166
Query: 62 PGSSYCLCPLGFTG-----DLCQTRLDLQVPQ-----------------FNGSSYLRYQG 99
G + Q +DL P F+G+ + + G
Sbjct: 167 TTRRIGPVTYSLDGCVRNLHMEQAPVDLDQPTSSFHVGTCFANAESGTYFDGTGFAKAVG 226
Query: 100 LGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATL 159
+ L L + F+ P G+LL + D + + + D + F D G G T
Sbjct: 227 GFKVGLD-LLVEFEFRTTRPTGVLLGVSSQK---MDGMGIEMIDEKLMFHVDNGAGRFTA 282
Query: 160 RSSNPISL----GEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVP 215
I G+WHK+ + L VD T + +++GG P
Sbjct: 283 IYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFP 342
Query: 216 DYNIVSPKVKIKSSFIGCIQKVLINNHELNIL------GEAIQGVNVVNC 259
+ + F GCI+ + + L ++GV V+C
Sbjct: 343 G-GLNQFGLTTNIRFRGCIRSLKLTKGTGKPLEVNFAKALELRGVQPVSC 391
Score = 102 bits (254), Expect = 1e-23
Identities = 52/274 (18%), Positives = 93/274 (33%), Gaps = 56/274 (20%)
Query: 262 PCITQPCGSGSCVPLYDGYKCVCTQSCKESHLTEVMCASFDHGASFLHYLDPEIIHSSGL 321
P + P + P+ C + + LT S + + +
Sbjct: 2 PLASVPTPAFPF-PVPTMVHGPCVAESEPALLTGSKQFGLS-RNSHIAIAFDDTKVKN-- 57
Query: 322 LHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGYAHVMYNL 381
I++ ++T + SGL+ + DF + + NG+ + Y+L
Sbjct: 58 ----------------RLTIELEVRTEAESGLLFYMARINHADFATVQLRNGFPYFSYDL 101
Query: 382 GNGEVLLENNQTKINNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTG 441
G+G+ TKIN+G WH++ + R
Sbjct: 102 GSGDTST-MIPTKINDGQWHKIKIVRV--------------------------------K 128
Query: 442 KQCLIRIDTDYSMQSISGGKFEQLNTDSGLYVGGVEDIEELTR-SKYHHSFKGWISNLIL 500
++ ++ +D D S Q+IS K + L+ LYVGG+ R +S G + NL +
Sbjct: 129 QEGILYVD-DASSQTISPKKADILDVVGILYVGGLPINYTTRRIGPVTYSLDGCVRNLHM 187
Query: 501 -SNDYQVKLPLSRSQGSSCQLTCETLNTGQVTCF 533
+ P S +C E+ T F
Sbjct: 188 EQAPVDLDQPTSSFHVGTCFANAESGTYFDGTGF 221
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
protein; 1.9A {Mus musculus}
Length = 383
Score = 225 bits (574), Expect = 8e-69
Identities = 85/475 (17%), Positives = 145/475 (30%), Gaps = 105/475 (22%)
Query: 51 PCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNGSSYLRYQGLGEQYLSLLDL 110
P C Y F + +S+L L +
Sbjct: 2 PLAQPELCAVDTAPGYVAGAHQFG--------------LSQNSHLVLPLQQSDVRKRLQV 47
Query: 111 TIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEW 170
+ + +G++ Y H+ D+ L L + + F FDLG G + +S G+W
Sbjct: 48 QLSIRTFASSGLIYYVAHQ--NQMDYATLQLQEGRLHFMFDLGKGRTKVSHPALLSDGKW 105
Query: 171 HKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVKIKSSF 230
H ++ R A++ VD S + G T L + LYLGG+P + I S
Sbjct: 106 HTVKTEYIKRKAFMTVDGQESPSVTVVGKATTLDVERKLYLGGLPSHYRARNIGTITHSI 165
Query: 231 IGCIQKVLINNHELNILGEAIQGVNVVNCAHPCITQPCGSGSCVPLYDGYKCVCTQSCKE 290
CI ++++N +L+ + V C GS
Sbjct: 166 PACIGEIMVNGQQLD-KDRPLSASAVDRCYVVAQEGTFFEGSGY---------------- 208
Query: 291 SHLTEVMCASFDHGASFLHYLDPEIIHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSS 350
L + + I + +T+S
Sbjct: 209 -----------------------------------AALVKEGYKVRLDLQITLEFRTTSK 233
Query: 351 SGLILWTGSSQSKDFLALGIHNGYAHVMYNLGNGE---VLLENNQTKINNGVWHRLTVHR 407
+G++L S++ D + L I +G N G G + +G WH L H+
Sbjct: 234 NGVLLGISSAKV-DAIGLEIVDGKVLFHVNNGAGRITATYQPRAARALCDGKWHTLQAHK 292
Query: 408 NFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSMQSISGGKFEQLNT 467
+ + ++ +D + +T
Sbjct: 293 S--------------------------------KHRIVLTVDGNSVRAESPHTHSTSADT 320
Query: 468 DSGLYVGGVEDIEELTRSKYHHSFKGWISNLILSNDYQVK-LPLSRSQGSSCQLT 521
+ +YVGG + SF+G + NL LS QV+ L LSR+
Sbjct: 321 NDPIYVGGYPAHIKQNSLSSRASFRGCVRNLRLSRGSQVQSLDLSRAFDLQGVFP 375
Score = 135 bits (341), Expect = 2e-35
Identities = 50/289 (17%), Positives = 92/289 (31%), Gaps = 31/289 (10%)
Query: 2 VKSDNQVILDDWNTVRVFRHRWDAWIQLNDGNKIKGRSKECLEDKCNKTPCEHGGKCITT 61
V + W+TV+ + A++ ++ + GG
Sbjct: 94 VSHPALLSDGKWHTVKTEYIKRKAFMTVDGQESPSVTVVGKATTLDVERKLYLGGLPSHY 153
Query: 62 PGSSYCLCPLGFTG------------DLCQTRLDLQVPQ----------FNGSSYLRYQG 99
+ D + V + F GS Y
Sbjct: 154 RARNIGTITHSIPACIGEIMVNGQQLDKDRPLSASAVDRCYVVAQEGTFFEGSGYAALVK 213
Query: 100 LGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAAT- 158
G + L +T+ F+ NG+LL D I L + D V F + G G T
Sbjct: 214 EGYKVRLDLQITLEFRTTSKNGVLLGIS---SAKVDAIGLEIVDGKVLFHVNNGAGRITA 270
Query: 159 ---LRSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVP 215
R++ + G+WH L+ ++ L VD T + +Y+GG P
Sbjct: 271 TYQPRAARALCDGKWHTLQAHKSKHRIVLTVDGNSVRAESPHTHSTSADTNDPIYVGGYP 330
Query: 216 DYNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAIQGVNVVNC-AHPC 263
+I + ++SF GC++ + ++ + + ++ H C
Sbjct: 331 A-HIKQNSLSSRASFRGCVRNLRLSRGSQVQSLDLSRAFDLQGVFPHSC 378
Score = 102 bits (256), Expect = 7e-24
Identities = 40/261 (15%), Positives = 75/261 (28%), Gaps = 56/261 (21%)
Query: 275 PLYDGYKCVCTQSCKESHLTEVMCASFDHGASFLHYLDPEIIHSSGLLHYKFQLHVDFRI 334
PL C + ++ S L +
Sbjct: 2 PLAQPELCAVDTA--PGYVAGAHQFGLS-QNSHLVLPLQQSDVRK--------------- 43
Query: 335 TGYEFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGYAHVMYNLGNGEVLLENNQTK 394
+ + I+T +SSGLI + D+ L + G H M++LG G + +
Sbjct: 44 ---RLQVQLSIRTFASSGLIYYVAHQNQMDYATLQLQEGRLHFMFDLGKGRTKVSHPA-L 99
Query: 395 INNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSM 454
+++G WH + ++ + +D S
Sbjct: 100 LSDGKWHTVKTEYI--------------------------------KRKAFMTVDGQESP 127
Query: 455 QSISGGKFEQLNTDSGLYVGGV-EDIEELTRSKYHHSFKGWISNLIL-SNDYQVKLPLSR 512
GK L+ + LY+GG+ HS I +++ PLS
Sbjct: 128 SVTVVGKATTLDVERKLYLGGLPSHYRARNIGTITHSIPACIGEIMVNGQQLDKDRPLSA 187
Query: 513 SQGSSCQLTCETLNTGQVTCF 533
S C + + + + +
Sbjct: 188 SAVDRCYVVAQEGTFFEGSGY 208
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 224 bits (572), Expect = 4e-68
Identities = 90/440 (20%), Positives = 165/440 (37%), Gaps = 79/440 (17%)
Query: 89 FNGSSYLRYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDF 148
SSY+ L + Y S+ L FK +G++LYN DFI + L Y+ +
Sbjct: 11 KTKSSYVALATL-QAYTSM-HLFFQFKTTSLDGLILYNS---GDGNDFIVVELVKGYLHY 65
Query: 149 TFDLGTGAATLR--SSNPISLGEWHKLRLTRTGRHAY-LQVDRFPSSQILSPGPFTQLSL 205
FDLG GA ++ S+ P++ +WH + ++R + + +++D ++QI L L
Sbjct: 66 VFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQI--TAGARNLDL 123
Query: 206 SLSLYLGGVPD--YNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAIQGVNVV-----N 258
LY+GGV Y + V K F GC+ V +N +++ +A+ +
Sbjct: 124 KSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEG 183
Query: 259 CAHPCITQPCG-SGSCVPLYDGYKCVCTQSCKESH--LTEVMCASFDHGASFLHYLDPEI 315
+ C C G C+ +DG+ C C+ + F G + Y P
Sbjct: 184 PSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPP- 242
Query: 316 IHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQ-SKDFLALGIHNGY 374
+ R + + + T +++ SS D+L L IH G
Sbjct: 243 ---------------NDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGK 287
Query: 375 AHVMYNLGNGEVLLENNQTKINNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSI 434
V +N+G ++ +E + IN+G +H + R+
Sbjct: 288 IGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRS-------------------------- 321
Query: 435 QRLHRTGKQCLIRID-TDYSMQSISGGKFEQLNTDSGLYVGGVEDIEELTRSKYHHSFKG 493
G +++D + +G + N+ + + +GG E F+G
Sbjct: 322 ------GGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ---------GQPFQG 366
Query: 494 WISNLILSNDYQVKLPLSRS 513
+S L + + +
Sbjct: 367 QLSGLYYNGLKVLNMAAEND 386
Score = 148 bits (374), Expect = 1e-39
Identities = 51/242 (21%), Positives = 93/242 (38%), Gaps = 20/242 (8%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPL-GFTGDLCQTRLDLQVPQFNGSSYLRYQG 99
E C + C + G C+ C C + F+G LC + G + Y+
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIF-SKGGGQITYKW 240
Query: 100 LGEQYLSLL--DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAA 157
S L I F ++ +L+ + G+GD++ L+++ + F++GT
Sbjct: 241 PPNDRPSTRADRLAIGFSTVQKEAVLVRVD-SSSGLGDYLELHIHQGKIGVKFNVGTDDI 299
Query: 158 TLRSSN-PISLGEWHKLRLTRTGRHAYLQVDRFP-SSQILSPGPFTQLSLSLSLYLGGVP 215
+ SN I+ G++H +R TR+G +A LQVD +P + + T + ++ +GG
Sbjct: 300 AIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKE 359
Query: 216 DYNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAIQGVNVVNCAHPCITQPCGSGSCVP 275
F G + + N L +L A + + +
Sbjct: 360 QGQ----------PFQGQLSGLYYNG--LKVLNMAAENDANIAI-VGNVRLVGEVSRLEN 406
Query: 276 LY 277
LY
Sbjct: 407 LY 408
Score = 87.8 bits (217), Expect = 8e-19
Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 299 ASFDHGASFLHYLDPEIIHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTG 358
+F +S++ + S ++ + KT+S GLIL+
Sbjct: 8 VTFKTKSSYVALATLQAYTS--------------------MHLFFQFKTTSLDGLILYNS 47
Query: 359 SSQSKDFLALGIHNGYAHVMYNLGNGEVLLE-NNQTKINNGVWHRLTVHRNFMVVMHGSS 417
DF+ + + GY H +++LGNG L++ ++ +N+ WH + + R+
Sbjct: 48 -GDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRD--------- 97
Query: 418 HTRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSMQSISGGKFEQLNTDSGLYVGGVE 477
T ++IDT + Q +G + L+ S LY+GGV
Sbjct: 98 ----------------------TSNLHTVKIDTKITTQITAGAR--NLDLKSDLYIGGVA 133
Query: 478 DIEELTRSKYHHS---FKGWISNLILSNDYQVKLPLSRSQGSSCQLTCE 523
+ K H+ F+G ++++ L+ + + + CE
Sbjct: 134 KETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCE 182
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 220 bits (561), Expect = 3e-62
Identities = 94/469 (20%), Positives = 167/469 (35%), Gaps = 84/469 (17%)
Query: 88 QFNGS--SYLRYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYL-NDR 144
+F G+ + R+ +++ K G++LY +G DF+ L L
Sbjct: 2 EFPGAEGQWTRFPKW-NACCES-EMSFQLKTRSARGLVLYFDD--EGFCDFLELILTRGG 57
Query: 145 YVDFTFDLGTG-AATLRSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQL 203
+ +F + ATL + P++ G WH +R+ R R+ L +D+ + + +
Sbjct: 58 RLQLSFSIFCAEPATLLTDTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDM 117
Query: 204 SLSLSLYLGGVPD------YNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAI------ 251
++ L++GG+P + V+ + F G I+ V + + +
Sbjct: 118 TVFSGLFVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDE 177
Query: 252 ----QGVNVVNCAHPCITQPCG-SGSCVPLYDGYKCVCTQS----CKESHLTEVMCASFD 302
G + C G C + D C C+++ S E A+F
Sbjct: 178 PPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFK 237
Query: 303 HGASFLHYLDPEIIHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQS 362
G+ + Y + S I + KT +GL+L TG +S
Sbjct: 238 -GSEYFCYDLSQNPIQS-----------------SSDEITLSFKTLQRNGLMLHTG--KS 277
Query: 363 KDFLALGIHNGYAHVMYNLGNG--EVLLENNQTKINNGVWHRLTVHRNFMVVMHGSSHTR 420
D++ L + NG ++ NLG+G E L+E K N+ WH + V RN
Sbjct: 278 ADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRN------------ 325
Query: 421 SNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSMQSISGGKFEQLNTDSGLYVGGVEDIE 480
+Q I +D + + + L +D YVGG
Sbjct: 326 --------------------LRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTA 365
Query: 481 ELTRSKYHHSFKGWISNLILSNDYQVKLPLSRSQGSSCQLTCETLNTGQ 529
+L S ++F G + ++ N+ V+L LSR
Sbjct: 366 DLPGSPVSNNFMGCLKEVVYKNND-VRLELSRLAKQGDPKMKIHGVVAF 413
Score = 220 bits (560), Expect = 4e-62
Identities = 99/557 (17%), Positives = 194/557 (34%), Gaps = 100/557 (17%)
Query: 1 MVKSDNQVILDDWNTVRVFRHRWDAWIQLNDGNKIKGRSKECLED--------------- 45
+ + + ++W+TVRV R + ++D + G+
Sbjct: 730 TLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERR 789
Query: 46 ----------KCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNGSSYL 95
++ +G I + + + V SSY+
Sbjct: 790 YLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKTKSSYV 849
Query: 96 RYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTG 155
L Q + + L FK +G++LYN DFI + L Y+ + FDLG G
Sbjct: 850 ALATL--QAYTSMHLFFQFKTTSLDGLILYNS---GDGNDFIVVELVKGYLHYVFDLGNG 904
Query: 156 AATLR--SSNPISLGEWHKLRLTRTGRHAY-LQVDRFPSSQILSPGPFTQLSLSLSLYLG 212
A ++ S+ P++ +WH + ++R + + +++D ++Q L L LY+G
Sbjct: 905 ANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQ--ITAGARNLDLKSDLYIG 962
Query: 213 GVPD--YNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAIQGVNVV--NC---AHPCIT 265
GV Y + V K F GC+ V +N +++ +A+ + C + C
Sbjct: 963 GVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQE 1022
Query: 266 QPCG-SGSCVPLYDGYKCVCTQSCKESHLTEVMCASFDHGASFLHYLDPEIIHSSGLLHY 324
C G C+ +DG+ C C+ + + I S G
Sbjct: 1023 DSCSNQGVCLQQWDGFSCDCSMT--------------SFSGPLCNDPGTTYIFSKGGGQI 1068
Query: 325 KFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSK-DFLALGIHNGYAHVMYNLGN 383
++ + R + + + T +++ SS D+L L IH G V +N+G
Sbjct: 1069 TYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGT 1128
Query: 384 GEVLLENNQTKINNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTGKQ 443
++ +E + IN+G +H + R+ G
Sbjct: 1129 DDIAIEESNAIINDGKYHVVRFTRS--------------------------------GGN 1156
Query: 444 CLIRID-TDYSMQSISGGKFEQLNTDSGLYVGGVEDIEELTRSKYHHSFKGWISNLILSN 502
+++D + +G + N+ + + +GG E F+G +S L +
Sbjct: 1157 ATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ---------GQPFQGQLSGLYYNG 1207
Query: 503 DYQVKLPLSRSQGSSCQ 519
+ + +
Sbjct: 1208 LKVLNMAAENDANIAIV 1224
Score = 215 bits (549), Expect = 1e-60
Identities = 89/490 (18%), Positives = 179/490 (36%), Gaps = 103/490 (21%)
Query: 37 GRSKECLEDKCNKTPCEHGGKCITTPGSSYCLCP-LGFTGDLCQTRLDLQVPQFNGSSYL 95
G S ++ C +GG C + C C GF G C + + F GS Y
Sbjct: 183 GGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYF 242
Query: 96 RYQGLGE-QYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGT 154
Y S ++T+ FK ++ NG++L+ G D++ L L + V +LG+
Sbjct: 243 CYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKS----ADYVNLALKNGAVSLVINLGS 298
Query: 155 GAATLRSS---NPISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYL 211
GA + WH +++TR R + VD ++ + +T L Y+
Sbjct: 299 GAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYV 358
Query: 212 GGVPDYNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAIQGVNVVNCAHPCITQPCGSG 271
GG P + P + ++F+GC+++V+ N+++ + + A + G
Sbjct: 359 GGSPSTADL-PGSPVSNNFMGCLKEVVYKNNDVRL--------ELSRLAKQGDPKMKIHG 409
Query: 272 SCVPLYDGYKCVCTQSCKESHLTEVMCASFDHGASFLHYLDPEIIHSSGLLHYKFQLHVD 331
+ + +F+ SF+
Sbjct: 410 VVAFKCENVATLDP-------------ITFETPESFISLPKWNAKK-------------- 442
Query: 332 FRITGYEFNIDMRIKTSSSSGLILWTGSSQS------------KDFLALGIHNGYAHVMY 379
+I +T+ +GLIL++ DF A+ + +G+ +++
Sbjct: 443 ------TGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLL 496
Query: 380 NLGNGEVLLENNQTKINNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHR 439
++G+G + ++ Q K+N+G W+ + R+
Sbjct: 497 DMGSGTIKIKALQKKVNDGEWYHVDFQRD------------------------------- 525
Query: 440 TGKQCLIRIDTDYSMQSISGGKFEQLNTDSGLYVGGVEDIE-------ELTRSKYHHSFK 492
G+ I ++ + G+ E L+ D LY+GG+ + + E+ + ++ +
Sbjct: 526 -GRSGTISVN-TLRTPYTAPGESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYV 583
Query: 493 GWISNLILSN 502
G I +L +
Sbjct: 584 GCIRDLFIDG 593
Score = 190 bits (484), Expect = 4e-52
Identities = 97/565 (17%), Positives = 182/565 (32%), Gaps = 115/565 (20%)
Query: 13 WNTVRVFRHRWDAWIQLNDGNKIKGRSKE------------------------------- 41
W+ V+V R+ I ++ G ++E
Sbjct: 317 WHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNF 376
Query: 42 --CLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFN-GSSYLRYQ 98
CL++ K + G C+ L F S++
Sbjct: 377 MGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLP 436
Query: 99 GLGEQYLSLLDLTIVFKAIEPNGILLYNG----------HRADGVGDFIALYLNDRYVDF 148
+ ++ F+ EPNG++L++ H DF A+ + D ++
Sbjct: 437 KWNAK--KTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYL 494
Query: 149 TFDLGTGAATLRSSN-PISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSL 207
D+G+G +++ ++ GEW+ + R GR + V+ + +PG L L
Sbjct: 495 LLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTP-YTAPGESEILDLDD 553
Query: 208 SLYLGGVPD------YNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAIQGVNV----- 256
LYLGG+P+ + + ++GCI+ + I+ +I A
Sbjct: 554 ELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPS 613
Query: 257 --VNCAHPCITQPCG-SGSCVPLYDGYKCVCTQSCKESHLTEVMCASFDHGASFLHYLDP 313
A PC++ PC +G C ++ Y C C+ + E
Sbjct: 614 CSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREA--------------- 658
Query: 314 EIIHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNG 373
++ G + K QL + ++ +R ++ + G+++ T S S D L L + G
Sbjct: 659 TVLSYDGSMFMKIQL--PVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAG 716
Query: 374 YAHVMYNLGNGEVLLENNQTKINNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLS 433
+ NLG G L +N+ WH + V R
Sbjct: 717 RVKLTVNLGKGPETLFAGYN-LNDNEWHTVRVVRR------------------------- 750
Query: 434 IQRLHRTGKQCLIRIDTDYSMQSISGGKFEQLNTDSGLYVGGVEDIEELTRSKYHHSFKG 493
GK + +D +M G +L + E + +F G
Sbjct: 751 -------GKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSS---VPSNFIG 800
Query: 494 WISNLILSNDYQVKLPLSRSQGSSC 518
+ +L + + L +
Sbjct: 801 HLQSLTFNGMAYIDLCKNGDIDYCE 825
Score = 178 bits (453), Expect = 4e-48
Identities = 90/477 (18%), Positives = 165/477 (34%), Gaps = 92/477 (19%)
Query: 28 QLNDGNKIKGRSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVP 87
++ +K C PC++ G C C C R + V
Sbjct: 603 EVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCER-EATVL 661
Query: 88 QFNGSSYLRYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVD 147
++GS +++ Q + D+++ F++ GIL+ R D + L L+ V
Sbjct: 662 SYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSA--DTLRLELDAGRVK 719
Query: 148 FTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSL 207
T +LG G TL + ++ EWH +R+ R G+ L VD + G T+L
Sbjct: 720 LTVNLGKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHN 779
Query: 208 SLYLGGVPDYNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAIQGVNVVNCAHPCITQP 267
+ S + S+FIG +Q + N C
Sbjct: 780 IETGIITERRYLSS----VPSNFIGHLQSLTFNGM---------------AYIDLCKNGD 820
Query: 268 CGSGSCVPLYDGYKCVCTQSCKESHLTEVMCASFDHGASFLHYLDPEIIHSSGLLHYKFQ 327
+ + +F +S++ + S
Sbjct: 821 IDYCELNARFGFRNIIADP------------VTFKTKSSYVALATLQAYTS--------- 859
Query: 328 LHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGYAHVMYNLGNGEVL 387
++ + KT+S GLIL+ + DF+ + + GY H +++LGNG L
Sbjct: 860 -----------MHLFFQFKTTSLDGLILYNSGDGN-DFIVVELVKGYLHYVFDLGNGANL 907
Query: 388 LE-NNQTKINNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTGKQCLI 446
++ ++ +N+ WH + + R+ T +
Sbjct: 908 IKGSSNKPLNDNQWHNVMISRD-------------------------------TSNLHTV 936
Query: 447 RIDTDYSMQSISGGKFEQLNTDSGLYVGGVEDIEELTRSKY---HHSFKGWISNLIL 500
+IDT + Q +G + L+ S LY+GGV + K F+G ++++ L
Sbjct: 937 KIDTKITTQITAGAR--NLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDL 991
Score = 141 bits (357), Expect = 1e-35
Identities = 52/238 (21%), Positives = 94/238 (39%), Gaps = 16/238 (6%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPL-GFTGDLCQTRLDLQV-PQFNGSSYLRYQ 98
E C + C + G C+ C C + F+G LC + + G ++
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWP 1073
Query: 99 GLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAAT 158
L I F ++ +L+ + G+GD++ L+++ + F++GT
Sbjct: 1074 PNDRPSTRADRLAIGFSTVQKEAVLVR-VDSSSGLGDYLELHIHQGKIGVKFNVGTDDIA 1132
Query: 159 LRSSN-PISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPG-PFTQLSLSLSLYLGGVPD 216
+ SN I+ G++H +R TR+G +A LQVD +P + G T + ++ +GG
Sbjct: 1133 IEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ 1192
Query: 217 YNIVSPKVKIKSSFIGCIQKVLINNHE-LNILGEAIQGVNVVNCAHPCITQPCGSGSC 273
F G + + N + LN+ E + +V P S S
Sbjct: 1193 ----------GQPFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRLVGEVPSASTSH 1240
Score = 34.0 bits (77), Expect = 0.13
Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 6/101 (5%)
Query: 2 VKSDNQVILDDWNTVRVFRHRWDAWIQLNDGNKIKGRSKECLEDKCNKTPCEHGG----- 56
+ +D V W+ VR+ R + + ++ K D + GG
Sbjct: 73 LLTDTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDMTVFSGLFVGGLPPEL 132
Query: 57 -KCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNGSSYLR 96
+ F G + R+ + S ++
Sbjct: 133 RAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSGEVK 173
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 201 bits (511), Expect = 2e-57
Identities = 78/459 (16%), Positives = 157/459 (34%), Gaps = 102/459 (22%)
Query: 88 QFNGSSYLRYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVD 147
G Y+ ++ ++ + K + +L Y G DF+A+ + V
Sbjct: 14 SSGGDCVRTYRPEIKKGSYN-NIVVHVKTAVADNLLFYLGSA--KFIDFLAIEMRKGKVS 70
Query: 148 FTFDLGTGAATLRSSN-PISLGEWHKLRLTRTGRHAYLQVDRFPSSQIL---------SP 197
F +D+G+G + + I W+++ +RTGR+ + V + SP
Sbjct: 71 FLWDVGSGVGRVEYPDLTIDDSYWYRIEASRTGRNGSISVRALDGPKASMVPSTYHSVSP 130
Query: 198 GPFTQLSLSLS--LYLGGVPDYNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAIQGVN 255
+T L + + L++GG+ + V++ +F GC+ + +N + +
Sbjct: 131 PGYTILDVDANAMLFVGGLTGKIKKADAVRVI-TFTGCMGETYFDNKPIGLWN------- 182
Query: 256 VVNCAHPCITQPCGSGSCVPLYDGYKCVCTQSCKESHLTEVMCASFDHGASFLHYLDPEI 315
G C + ++ FD G + P
Sbjct: 183 ----------FREKEGDCKGCTVSPQVEDSE----------GTIQFD-GEGYALVSRPIR 221
Query: 316 IHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGYA 375
+ + + + +T SSS L+++ + KDF+++ + +G+
Sbjct: 222 WYPN------------------ISTVMFKFRTFSSSALLMYLATRDLKDFMSVELSDGHV 263
Query: 376 HVMYNLGNGEVLLENNQTKINNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQ 435
V Y+LG+G + +NQ N+G W T+ R
Sbjct: 264 KVSYDLGSGMTSVVSNQ-NHNDGKWKAFTLSRI--------------------------- 295
Query: 436 RLHRTGKQCLIRID-----TDYSMQSISGGKFEQLN--TDSGLYVGGVEDIEELTRSKYH 488
KQ I I + ++ + S G L+ D +Y GG+ + L
Sbjct: 296 -----QKQANISIVDIDSNQEENVATSSSGNNFGLDLKADDKIYFGGLPTLRNLRPEVNV 350
Query: 489 HSFKGWISNLILSNDYQVKLPLSRSQGSSCQLTCETLNT 527
+ G + ++ +S L G + + E + T
Sbjct: 351 KKYSGCLKDIEISRTPYNILSSPDYVGVTKGCSLENVYT 389
Score = 192 bits (489), Expect = 2e-54
Identities = 88/546 (16%), Positives = 168/546 (30%), Gaps = 141/546 (25%)
Query: 7 QVILDD--WNTVRVFRHRWDAWIQLNDGNKIKGRSKECLE-----------DKCNKTPCE 53
+ +DD W + R + I + + K D
Sbjct: 86 DLTIDDSYWYRIEASRTGRNGSISVRALDGPKASMVPSTYHSVSPPGYTILDVDANAMLF 145
Query: 54 HGG--------KCITTPGSSYCLCPLGFTGDLCQTRL-------------------DLQV 86
GG + + C+ F
Sbjct: 146 VGGLTGKIKKADAVRVITFTGCMGETYFDNKPIGLWNFREKEGDCKGCTVSPQVEDSEGT 205
Query: 87 PQFNGSSYLRYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYV 146
QF+G Y Y ++ + F+ + +L+Y R + DF+++ L+D +V
Sbjct: 206 IQFDGEGYALVSRPIRWYPNISTVMFKFRTFSSSALLMYLATR--DLKDFMSVELSDGHV 263
Query: 147 DFTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYLQVD-----RFPSSQILSPGPFT 201
++DLG+G ++ S+ + G+W L+R + A + + + + S G
Sbjct: 264 KVSYDLGSGMTSVVSNQNHNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGNNF 323
Query: 202 QLSLSL--SLYLGGVPDYNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAIQGVNVVNC 259
L L +Y GG+P + P+V + GC++ + I+ NIL
Sbjct: 324 GLDLKADDKIYFGGLPTLRNLRPEV-NVKKYSGCLKDIEISRTPYNIL------------ 370
Query: 260 AHPCITQPCGSGSCVPLYDGYKCVCTQSCKESHLTEVMCASFDHGASFLHYLDPEIIHSS 319
P Y G C+ V SF F+ I
Sbjct: 371 -------------SSPDYVGVTKGCSLEN-------VYTVSFP-KPGFVELAAVSIDV-- 407
Query: 320 GLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGYAHVMY 379
I++ T + SG+IL S + + A+ ++ G V
Sbjct: 408 ------------------GTEINLSFSTRNESGIILLG-SGGGQAYYAIFLNKGRLEVHL 448
Query: 380 NLGNG---EVLLENNQTKINNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQR 436
+ G +++++ + ++G H + V R
Sbjct: 449 SSGTRTMRKIVIKPEPNRFHDGREHSVHVERT---------------------------- 480
Query: 437 LHRTGKQCLIRIDTDYSMQSISGGKFEQLNTDSGLYVGGVEDIEELTRSKYHHSFKGWIS 496
++ID D EQ L+VGG + + + +F+G +
Sbjct: 481 ----RGIFTVQIDEDRRHMQNLTE--EQPIEVKKLFVGGAPPEFQPSPLRNIPAFQGCVW 534
Query: 497 NLILSN 502
NL++++
Sbjct: 535 NLVINS 540
Score = 118 bits (296), Expect = 2e-28
Identities = 46/306 (15%), Positives = 92/306 (30%), Gaps = 48/306 (15%)
Query: 2 VKSDNQVILDDWNTVRVFRHRWDAWIQLNDGNKIKGRSKEC------------------- 42
V S+ W + R + A I + D + + +
Sbjct: 276 VVSNQNHNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGNNFGLDLKADDKIYF 335
Query: 43 ------LEDKCNKTPCEHGGKCIT----TPGSSYCLCPLGFTGDLCQTRLDLQVP-QFNG 91
+ ++ G C+ + L + G L+ F
Sbjct: 336 GGLPTLRNLRPEVNVKKYSG-CLKDIEISRTPYNILSSPDYVGVTKGCSLENVYTVSFPK 394
Query: 92 SSYLRYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFD 151
++ + ++ + F +GI+L + G + A++LN ++
Sbjct: 395 PGFVELAAV--SIDVGTEINLSFSTRNESGIILLG---SGGGQAYYAIFLNKGRLEVHLS 449
Query: 152 LGTGAA----TLRSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSL 207
GT N G H + + RT +Q+D Q
Sbjct: 450 SGTRTMRKIVIKPEPNRFHDGREHSVHVERTRGIFTVQIDEDRRHMQNLTEE--QPIEVK 507
Query: 208 SLYLGGVPDYNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAIQGVNVV--NCAH--PC 263
L++GG P SP ++ +F GC+ ++IN+ ++ + I N C + P
Sbjct: 508 KLFVGGAPPEFQPSP-LRNIPAFQGCVWNLVINSIPMD-FAQPIAFKNADIGRCTYQKPR 565
Query: 264 ITQPCG 269
+
Sbjct: 566 EDESEA 571
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2,
protein structure initiative; 1.40A {Mus musculus}
Length = 189
Score = 186 bits (475), Expect = 1e-56
Identities = 73/178 (41%), Positives = 104/178 (58%), Gaps = 3/178 (1%)
Query: 86 VPQFNGSSYLRYQGLGEQYLSL---LDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLN 142
+ FNG SYL +GL L + L +VF A P+G+LLYNG + DG GDF++L L+
Sbjct: 11 LADFNGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKGDFVSLALH 70
Query: 143 DRYVDFTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQ 202
+R+++F +DLG GAA +RS PI+LG W ++ L R GR LQV P SP P T
Sbjct: 71 NRHLEFRYDLGKGAAIIRSKEPIALGTWVRVFLERNGRKGALQVGDGPRVLGESPVPHTM 130
Query: 203 LSLSLSLYLGGVPDYNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAIQGVNVVNCA 260
L+L LY+GG PD++ ++ + S F G IQ V + H+L ++ V+V A
Sbjct: 131 LNLKEPLYVGGAPDFSKLARGAAVASGFDGAIQLVSLRGHQLLTQEHVLRAVDVAPFA 188
Score = 108 bits (271), Expect = 1e-27
Identities = 44/214 (20%), Positives = 72/214 (33%), Gaps = 53/214 (24%)
Query: 299 ASFDHGASFLHYLDPEIIHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTG 358
A F+ G S+L G + ++M SGL+L+ G
Sbjct: 12 ADFN-GFSYLELKGLHTFERD---------------LGEKMALEMVFLARGPSGLLLYNG 55
Query: 359 SSQ--SKDFLALGIHNGYAHVMYNLGNGEVLLENNQTKINNGVWHRLTVHRNFMVVMHGS 416
DF++L +HN + Y+LG G ++ + + I G W R+ + RN
Sbjct: 56 QKTDGKGDFVSLALHNRHLEFRYDLGKGAAIIRSKE-PIALGTWVRVFLERN-------- 106
Query: 417 SHTRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSMQSISGGKFEQLNTDSGLYVGGV 476
G++ +++ + S LN LYVGG
Sbjct: 107 ------------------------GRKGALQVGDGPRVLGESPVPHTMLNLKEPLYVGGA 142
Query: 477 EDIEELTRS-KYHHSFKGWISNLILSNDYQVKLP 509
D +L R F G I + L +Q+
Sbjct: 143 PDFSKLARGAAVASGFDGAIQLVSL-RGHQLLTQ 175
Score = 30.6 bits (69), Expect = 0.80
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 2 VKSDNQVILDDWNTVRVFRHRWDAWIQLNDGNKIKGRS 39
++S + L W V + R+ +Q+ DG ++ G S
Sbjct: 87 IRSKEPIALGTWVRVFLERNGRKGALQVGDGPRVLGES 124
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller,
laminin-G, signaling, protein binding; HET: NAG; 2.85A
{Rattus norvegicus} PDB: 3v65_A
Length = 191
Score = 169 bits (430), Expect = 5e-50
Identities = 46/191 (24%), Positives = 87/191 (45%), Gaps = 13/191 (6%)
Query: 84 LQVPQFNGSSYLRYQG-----------LGEQYLSLLDLTIVFKAIEPNGILLYNGHRADG 132
L+ F+G +Y+ Y E+ L + + G++L+ G A+
Sbjct: 2 LETLAFDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGKAAER 61
Query: 133 VGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSS 192
D++AL + D ++ ++DLG+ LRS+ ++ W ++R R R LQV
Sbjct: 62 -ADYMALAIVDGHLQLSYDLGSQPVVLRSTVKVNTNRWLRIRAHREHREGSLQVGNEAPV 120
Query: 193 QILSPGPFTQLSLSLSLYLGGVPDYNIVSPK-VKIKSSFIGCIQKVLINNHELNILGEAI 251
SP TQL +L+LGG+ + + F+GC++ V++ + +L++L +A+
Sbjct: 121 TGSSPLGATQLDTDGALWLGGLQKLPVGQALPKAYGTGFVGCLRDVVVGHRQLHLLEDAV 180
Query: 252 QGVNVVNCAHP 262
+ C P
Sbjct: 181 TKPELRPCPTP 191
Score = 115 bits (290), Expect = 3e-30
Identities = 44/229 (19%), Positives = 91/229 (39%), Gaps = 46/229 (20%)
Query: 299 ASFDHGASFLHYLDPEIIHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTG 358
+FD G +++ YL+ I + + ++ ++T ++ GL+LW G
Sbjct: 5 LAFD-GRTYIEYLNAVIESELTNEIPAEK-------ALQSNHFELSLRTEATQGLVLWIG 56
Query: 359 SSQSK-DFLALGIHNGYAHVMYNLGNGEVLLENNQTKINNGVWHRLTVHRNFMVVMHGSS 417
+ + D++AL I +G+ + Y+LG+ V+L + K+N W R+ HR
Sbjct: 57 KAAERADYMALAIVDGHLQLSYDLGSQPVVLRST-VKVNTNRWLRIRAHRE--------- 106
Query: 418 HTRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSMQSISGGKFEQLNTDSGLYVGGVE 477
++ +++ + + S QL+TD L++GG++
Sbjct: 107 -----------------------HREGSLQVGNEAPVTGSSPLGATQLDTDGALWLGGLQ 143
Query: 478 DIEELTR--SKYHHSFKGWISNLILSNDYQVKLPLSRSQGSSCQLTCET 524
+ Y F G + ++++ Q+ L L + C T
Sbjct: 144 KLPVGQALPKAYGTGFVGCLRDVVV-GHRQLHL-LEDAVTKPELRPCPT 190
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 173 bits (439), Expect = 8e-49
Identities = 68/465 (14%), Positives = 130/465 (27%), Gaps = 102/465 (21%)
Query: 47 CNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNGSSYLRYQGLGEQYLS 106
C+ + + T P + L F+G+ +R + Q
Sbjct: 6 CDGRGGLKLSQDMDTCEDILPCVPFSVAKSVKSLYL---GRMFSGTPVIRLRFKRLQPTR 62
Query: 107 LLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPIS 166
L F+ +P GILL+ G D +I L L ++ S I+
Sbjct: 63 L-VAEFDFRTFDPEGILLFAGGHQDS--TWIVLALRAGRLELQLRYNGVGRVTSSGPVIN 119
Query: 167 LGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLS---LSLSLYLGGVPDYNIVSPK 223
G W + + R+ ++V+R +I G Q L+L +GG+P +
Sbjct: 120 HGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPFHE-KDLV 178
Query: 224 VKIKSSFIGCIQKVLINNHELNILGEAIQGVNVVNCAHPCITQPCGSGSCVPLYDGYKCV 283
I GC++ N E + E ++ + C GS Y
Sbjct: 179 QPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQCFSVTERGSFYPGSGFAFYSL---- 234
Query: 284 CTQSCKESHLTEVMCASFDHGASFLHYLDPEIIHSSGLLHYKFQLHVDFRITGYEFNIDM 343
Y + +E +
Sbjct: 235 ---------------------------------------DYMRTPLDVGTESTWEVEVVA 255
Query: 344 RIKTSSSSGLILWTGSSQSKDFLALGIHNGYAHVMYNLGNGEVLLENNQT-------KIN 396
I+ ++ +G++ + + L + H L V+L T K+
Sbjct: 256 HIRPAADTGVLFALWAPDL-RAVPLSVALVDYHSTKKLKKQLVVLAVEHTALALMEIKVC 314
Query: 397 NGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSMQS 456
+G H +TV + + +D
Sbjct: 315 DGQEHVVTVSLR--------------------------------DGEATLEVDGTRGQSE 342
Query: 457 ISGGKFE--------QLNTDSGLYVGGVEDIEELTRSKYHHSFKG 493
+S + + L + + GG+ D+ +T + ++G
Sbjct: 343 VSAAQLQERLAVLERHLRSPVLTFAGGLPDV-PVTSAPVTAFYRG 386
Score = 97.2 bits (241), Expect = 7e-22
Identities = 35/270 (12%), Positives = 76/270 (28%), Gaps = 55/270 (20%)
Query: 268 CGSGSCVPL-YDGYKCVCTQSCKESHLTEVMCASFDHGASFLHYLDPEIIHSSGLLHYKF 326
C + L D C C + + S G F + ++ +F
Sbjct: 6 CDGRGGLKLSQDMDTCEDILPCVPFSVAK-SVKSLYLGRMF---------SGTPVIRLRF 55
Query: 327 QLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGYAHVMYNLGNGEV 386
+ R+ + +T G++L+ G Q ++ L + G +
Sbjct: 56 K-----RLQPTRLVAEFDFRTFDPEGILLFAGGHQDSTWIVLALRAGRLELQLRYNGVGR 110
Query: 387 LLENNQTKINNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTGKQCLI 446
+ ++ IN+G+W ++V + +I
Sbjct: 111 VT-SSGPVINHGMWQTISVEEL--------------------------------ARNLVI 137
Query: 447 RIDTDYSMQSISGGKFEQLNT---DSGLYVGGVEDIEELTRSKYHHSFKGWISNLILSND 503
+++ D M+ G Q L VGG+ E+ + G + + N
Sbjct: 138 KVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLN- 196
Query: 504 YQVKLPLSRSQGSSCQLTCETLNTGQVTCF 533
+ + T + + +
Sbjct: 197 --GEDTTIQETVKVNTRMQCFSVTERGSFY 224
Score = 86.4 bits (213), Expect = 2e-18
Identities = 43/317 (13%), Positives = 86/317 (27%), Gaps = 54/317 (17%)
Query: 2 VKSDNQVILDDWNTVRVFRHRWDAWIQLNDGNKIKGRSKECLEDKCNKTPCEH---GGK- 57
S + W T+ V + I++N +K L + GG
Sbjct: 112 TSSGPVINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIP 171
Query: 58 ----------------CI-------------TTPGSSYCLCPLGFTGDLCQTRLDLQVPQ 88
C+ +
Sbjct: 172 FHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQCFSVTERGSFYPGSGFAF 231
Query: 89 FNGSSYLRYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDF 148
++ +G + +++ + G+L D +++ L D +
Sbjct: 232 YSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVLFALW-APDLRAVPLSVALVDYHSTK 290
Query: 149 TFDLG------TGAATLRSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPF-- 200
A + G+ H + ++ A L+VD +S
Sbjct: 291 KLKKQLVVLAVEHTALALMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQE 350
Query: 201 ------TQLSLSLSLYLGGVPDYNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAIQGV 254
L + + GG+PD + S V + + GC+ + +N L+ L EA
Sbjct: 351 RLAVLERHLRSPVLTFAGGLPDVPVTSAPV--TAFYRGCM-TLEVNRRLLD-LDEAAYKH 406
Query: 255 NVVNCAHPC-ITQPCGS 270
+ + AH C +P +
Sbjct: 407 SDIT-AHSCPPVEPAAA 422
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4
PDB: 1pz8_A 1pz9_A 1q56_A
Length = 204
Score = 166 bits (421), Expect = 1e-48
Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 16/196 (8%)
Query: 79 QTRLDLQVPQFNGSSYLRYQGL------GEQYLSL--------LDLTIVFKAIEPNGILL 124
+ D + F+G +Y+ Y Y + + K G++L
Sbjct: 7 KAAGDAEAIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLIL 66
Query: 125 YNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYL 184
++G D+IAL + D +V +DLG+ LRS+ PI+ W ++ R R L
Sbjct: 67 WSGKG-LERSDYIALAIVDGFVQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGSL 125
Query: 185 QVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSP-KVKIKSSFIGCIQKVLINNHE 243
QV SP TQL +L+LGG+ ++ + FIGCI+ V+++ E
Sbjct: 126 QVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDRQE 185
Query: 244 LNILGEAIQGVNVVNC 259
L+++ +A+ +++C
Sbjct: 186 LHLVEDALNNPTILHC 201
Score = 107 bits (269), Expect = 3e-27
Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 43/228 (18%)
Query: 298 CASFDHGASFLHYLDPEIIHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWT 357
+FD G +++ Y + L + + ++ IKT ++ GLILW+
Sbjct: 14 AIAFD-GRTYMEYHNAVTKSPDALDYPAEPS----EKALQSNHFELSIKTEATQGLILWS 68
Query: 358 GSSQSK-DFLALGIHNGYAHVMYNLGNGEVLLENNQTKINNGVWHRLTVHRNFMVVMHGS 416
G + D++AL I +G+ +MY+LG+ V+L + IN W + +R
Sbjct: 69 GKGLERSDYIALAIVDGFVQMMYDLGSKPVVLRST-VPINTNHWTHIKAYRV-------- 119
Query: 417 SHTRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSMQSISGGKFEQLNTDSGLYVGGV 476
++ +++ + + S QL+TD L++GG+
Sbjct: 120 ------------------------QREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGM 155
Query: 477 EDIEELTR--SKYHHSFKGWISNLILSNDYQVKLPLSRSQGSSCQLTC 522
E + + Y F G I ++I+ + ++ L + + L C
Sbjct: 156 ERLSVAHKLPKAYSTGFIGCIRDVIV-DRQELHLV-EDALNNPTILHC 201
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal
binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Length = 195
Score = 153 bits (389), Expect = 4e-44
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 15/185 (8%)
Query: 89 FNGSSYLRYQGLGEQY---LSLLDLTIVFKAIEPNGILLYNGHRADGVG---DFIALYLN 142
F+ +L + G + + + +G+LL+ G G DFI+L L
Sbjct: 10 FHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQ 69
Query: 143 DRYVDFTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQ 202
D ++ F + LG+G A L S +PI+ GEWH++ R GR +QVD SPGP
Sbjct: 70 DGHLVFRYQLGSGEARLVSEDPINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPNVA 129
Query: 203 LSLSLSLYLGGVPDYNIVSPKVKIKSSFIGCIQKVLINN--------HELNILGEAIQGV 254
++ S+Y+GG PD + + S GC++ +++++ L++ A G
Sbjct: 130 VNAKGSVYIGGAPDVATL-TGGRFSSGITGCVKNLVLHSARPGAPPPQPLDLQHRAQAGA 188
Query: 255 NVVNC 259
N C
Sbjct: 189 NTRPC 193
Score = 118 bits (296), Expect = 6e-31
Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 55/220 (25%)
Query: 299 ASFDHGASFLHYLDPEIIHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTG 358
A F H FL + S + I++ ++TS++SGL+LW G
Sbjct: 8 AYF-HDDGFLAFPGHVFSRS---------------LPEVPETIELEVRTSTASGLLLWQG 51
Query: 359 -----SSQSKDFLALGIHNGYAHVMYNLGNGEVLLENNQTKINNGVWHRLTVHRNFMVVM 413
+ Q KDF++LG+ +G+ Y LG+GE L + IN+G WHR+T R
Sbjct: 52 VEVGEAGQGKDFISLGLQDGHLVFRYQLGSGEARLVSE-DPINDGEWHRVTALRE----- 105
Query: 414 HGSSHTRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSMQSISGGKFEQLNTDSGLYV 473
G++ I++D + + S G +N +Y+
Sbjct: 106 ---------------------------GRRGSIQVDGEELVSGRSPGPNVAVNAKGSVYI 138
Query: 474 GGVEDIEELTRSKYHHSFKGWISNLILSNDYQVKLPLSRS 513
GG D+ LT ++ G + NL+L + + P +
Sbjct: 139 GGAPDVATLTGGRFSSGITGCVKNLVL-HSARPGAPPPQP 177
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A
{Bos taurus}
Length = 182
Score = 144 bits (365), Expect = 6e-41
Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 10/183 (5%)
Query: 86 VPQFNGSSYLRYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRY 145
V ++GS +++ Q + D+++ F++ GIL+ R D + L L+
Sbjct: 7 VLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSR--DSADTLRLELDAGR 64
Query: 146 VDFTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSL 205
V T +LG G TL + ++ EWH +R+ R G+ L VD + G T+L
Sbjct: 65 VKLTVNLGKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEF 124
Query: 206 SLSLYLGGVPDYNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAIQGVNVVNCAHPCIT 265
++ G + + +S + S+FIG +Q + N L + ++ C
Sbjct: 125 H-NIETGIITERRYLSS---VPSNFIGHLQSLTFNGMAYIDL---CKNGDIDYC-ELNAR 176
Query: 266 QPC 268
Sbjct: 177 FGF 179
Score = 98.4 bits (245), Expect = 4e-24
Identities = 39/225 (17%), Positives = 74/225 (32%), Gaps = 56/225 (24%)
Query: 299 ASFDHGASFLHYLDPEIIHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTG 358
S+D G+ F+ P ++H+ ++ +R ++ + G+++ T
Sbjct: 8 LSYD-GSMFMKIQLPVVMHT------------------EAEDVSLRFRSQRAYGILMATT 48
Query: 359 SSQSKDFLALGIHNGYAHVMYNLGNGEVLLENNQTKINNGVWHRLTVHRNFMVVMHGSSH 418
S S D L L + G + NLG G L +N+ WH + V R
Sbjct: 49 SRDSADTLRLELDAGRVKLTVNLGKGPETLFAGY-NLNDNEWHTVRVVRR---------- 97
Query: 419 TRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSMQSISGGKFEQLNTDSGLYVGGVED 478
GK + +D +M G +L + + G + +
Sbjct: 98 ----------------------GKSLKLTVDDQQAMTGQMAGDHTRLEFHN-IETGIITE 134
Query: 479 IEELTRSKYHHSFKGWISNLILSNDYQVKLPLSRSQGSSCQLTCE 523
L+ +F G + +L + + L C+L
Sbjct: 135 RRYLSSVP--SNFIGHLQSLTFNGMAYIDL-CKNGDIDYCELNAR 176
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Length = 184
Score = 143 bits (363), Expect = 1e-40
Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 86 VPQFNGSSYLRYQGLGEQYLSL-LDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDR 144
+ F GS Y Y S ++T+ FK ++ NG++L+ G D++ L L +
Sbjct: 7 IATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKS----ADYVNLALKNG 62
Query: 145 YVDFTFDLGTGAATL---RSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFT 201
V +LG+GA + + WH +++TR R + VD ++ + +T
Sbjct: 63 AVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYT 122
Query: 202 QLSLSLSLYLGGVPDYNIVSPKVKIKSSFIGCIQKVLINNHELNI 246
L Y+GG P P + ++F+GC+++V+ N+++ +
Sbjct: 123 MLGSDDFFYVGGSPSTA-DLPGSPVSNNFMGCLKEVVYKNNDVRL 166
Score = 116 bits (293), Expect = 1e-30
Identities = 52/233 (22%), Positives = 85/233 (36%), Gaps = 60/233 (25%)
Query: 288 CKESHLTEVMCASFDHGASFLHYLDPEIIHSSGLLHYKFQLHVDFRITGYEFNIDMRIKT 347
KE ++ A+F G+ + Y + S I + KT
Sbjct: 2 SKEEYI-----ATFK-GSEYFCYDLSQNPIQS-----------------SSDEITLSFKT 38
Query: 348 SSSSGLILWTGSSQSKDFLALGIHNGYAHVMYNLGNG--EVLLENNQTKINNGVWHRLTV 405
+GL+L TG +S D++ L + NG ++ NLG+G E L+E K N+ WH + V
Sbjct: 39 LQRNGLMLHTG--KSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKV 96
Query: 406 HRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSMQSISGGKFEQL 465
RN +Q I +D + + + L
Sbjct: 97 TRN--------------------------------LRQVTISVDGILTTTGYTQEDYTML 124
Query: 466 NTDSGLYVGGVEDIEELTRSKYHHSFKGWISNLILSNDYQVKLPLSRSQGSSC 518
+D YVGG +L S ++F G + ++ + V+L LSR
Sbjct: 125 GSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVY-KNNDVRLELSRLAKQGD 176
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein;
HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB:
1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Length = 205
Score = 125 bits (315), Expect = 2e-33
Identities = 26/175 (14%), Positives = 63/175 (36%), Gaps = 10/175 (5%)
Query: 87 PQFNGSSYLRYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYV 146
P + + + S + + +P G++ Y D+ L L D
Sbjct: 22 PGQEPIAVMTFDLTKITKTSS---SFEVRTWDPEGVIFYGDTN--PKDDWFMLGLRDGRP 76
Query: 147 DFTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQI--LSPGPFTQLS 204
+ T+ + + G WH++ + G L+VD ++ +S ++
Sbjct: 77 EIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRH 136
Query: 205 LSLSLYLGGVPDYNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAIQGVNVVNC 259
+ + LGG+ + ++ + + GC+++ + + I A + +C
Sbjct: 137 PIMRIALGGLLF-PASNLRLPLVPALDGCLRRDSWLDKQAEISASAPTSLR--SC 188
Score = 99.6 bits (248), Expect = 3e-24
Identities = 31/216 (14%), Positives = 73/216 (33%), Gaps = 38/216 (17%)
Query: 312 DPEIIHSSGLLHYKFQLHVDFRITGY-EFNIDMRIKTSSSSGLILWTGSSQSKDFLALGI 370
DP +H S + + F +T + + ++T G+I + ++ D+ LG+
Sbjct: 12 DPPAVHLSNGPGQEPIAVMTFDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGL 71
Query: 371 HNGYAHVMYNLGNGEVLLENNQTKINNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFK 430
+G + + ++ + ++++G WH++ V
Sbjct: 72 RDGRPEIQLHNHWAQLTVGAG-PRLDDGRWHQVEVKME---------------------- 108
Query: 431 CLSIQRLHRTGKQCLIRIDTDYSM--QSISGGKFEQLNTDSGLYVGGVEDIEELTRSKYH 488
G L+ +D + + + +SG + + + +GG+ R
Sbjct: 109 ----------GDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASNLRLPLV 158
Query: 489 HSFKGWISNLILSNDYQVKLPLSRSQG-SSCQLTCE 523
+ G + D Q ++ S SC +
Sbjct: 159 PALDGCLRRDSW-LDKQAEISASAPTSLRSCDVESN 193
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium,
cell adhesion, EGF-like domain, glycoprotein, membrane,
metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C*
2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Length = 178
Score = 121 bits (304), Expect = 3e-32
Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 15/163 (9%)
Query: 86 VPQFNGSSYLRYQGLGEQYLSLL--DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLND 143
G + Y+ S L I F ++ +L+ + G+GD++ L+++
Sbjct: 7 YIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVD-SSSGLGDYLELHIHQ 65
Query: 144 RYVDFTFDLGTGAATLRSSN-PISLGEWHKLRLTRTGRHAYLQVDRFPSSQILS-PGPFT 201
+ F++GT + SN I+ G++H +R TR+G +A LQVD +P + T
Sbjct: 66 GKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLT 125
Query: 202 QLSLSLSLYLGGVPDYNIVSPKVKIKSSFIGCIQKVLINNHEL 244
+ ++ +GG F G + + N ++
Sbjct: 126 IFNSQATIIIGGKEQG----------QPFQGQLSGLYYNGLKV 158
Score = 96.5 bits (240), Expect = 2e-23
Identities = 36/202 (17%), Positives = 74/202 (36%), Gaps = 47/202 (23%)
Query: 318 SSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSK-DFLALGIHNGYAH 376
G + YK+ + R + + + T +++ SS D+L L IH G
Sbjct: 12 GGGQITYKWPP--NDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIG 69
Query: 377 VMYNLGNGEVLLENNQTKINNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQR 436
V +N+G ++ +E + IN+G +H + R+
Sbjct: 70 VKFNVGTDDIAIEESNAIINDGKYHVVRFTRS---------------------------- 101
Query: 437 LHRTGKQCLIRIDTDYSMQSIS-GGKFEQLNTDSGLYVGGVEDIEELTRSKYHHSFKGWI 495
G +++D+ ++ G + N+ + + +GG E F+G +
Sbjct: 102 ----GGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKE---------QGQPFQGQL 148
Query: 496 SNLILSNDYQVKLPLSRSQGSS 517
S L N +V L ++ ++
Sbjct: 149 SGLYY-NGLKV-LNMAAENDAN 168
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB:
3biw_E*
Length = 226
Score = 122 bits (307), Expect = 4e-32
Identities = 43/216 (19%), Positives = 81/216 (37%), Gaps = 21/216 (9%)
Query: 48 NKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNGSSYLRYQGLGEQYLSL 107
+ HG + + P G T G + Y+ S
Sbjct: 7 HHIHHFHGSSKHHSVPIAIYRSPASLRGGHAGT----TYIFSKGGGQITYKWPPNDRPST 62
Query: 108 L--DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSN-P 164
L I F ++ +L+ + G+GD++ L+++ + F++GT + SN
Sbjct: 63 RADRLAIGFSTVQKEAVLVRVD-SSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAI 121
Query: 165 ISLGEWHKLRLTRTGRHAYLQVDRFPSSQ-ILSPGPFTQLSLSLSLYLGGVPDYNIVSPK 223
I+ G++H +R TR+G +A LQVD +P + + T + ++ +GG
Sbjct: 122 INDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQG------ 175
Query: 224 VKIKSSFIGCIQKVLINNHELNILGEAIQGVNVVNC 259
F G + + N L +L A + +
Sbjct: 176 ----QPFQGQLSGLYYNG--LKVLNMAAENDANIAI 205
Score = 94.0 bits (233), Expect = 5e-22
Identities = 36/266 (13%), Positives = 78/266 (29%), Gaps = 66/266 (24%)
Query: 256 VVNCAHPCITQPCGSGSCVPLYDGYKCVCTQSCKESHLTEVMCASFDHGASFLHYLDPEI 315
+ H + +Y + + F G + Y P
Sbjct: 5 GAHHIHHFHGSSKHHSVPIAIYRSPASLRGGHAGTT-------YIFSKGGGQITYKWPP- 56
Query: 316 IHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSK-DFLALGIHNGY 374
+ R + + + T +++ SS D+L L IH G
Sbjct: 57 ---------------NDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGK 101
Query: 375 AHVMYNLGNGEVLLENNQTKINNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSI 434
V +N+G ++ +E + IN+G +H + R+
Sbjct: 102 IGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRS-------------------------- 135
Query: 435 QRLHRTGKQCLIRIDTDYSMQ-SISGGKFEQLNTDSGLYVGGVEDIEELTRSKYHHSFKG 493
G +++D+ ++ +G + N+ + + +GG E F+G
Sbjct: 136 ------GGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKE---------QGQPFQG 180
Query: 494 WISNLILSNDYQVKLPLSRSQGSSCQ 519
+S L + + + +
Sbjct: 181 QLSGLYYNGLKVLNMAAENDANIAIV 206
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin
G-like domain, jellyroll, androgen binding protein
(ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4
PDB: 1kdk_A* 1kdm_A*
Length = 170
Score = 120 bits (302), Expect = 4e-32
Identities = 25/173 (14%), Positives = 59/173 (34%), Gaps = 12/173 (6%)
Query: 87 PQFNGSSYLRYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYV 146
P + + + S + + +P G++ Y D+ L L D
Sbjct: 10 PGQEPIAVMTFDLTKITKTSS---SFEVRTWDPEGVIFYGDTNPKD--DWFMLGLRDGRP 64
Query: 147 DFTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLS 206
+ T+ + + G WH++ + G L+VD ++
Sbjct: 65 EIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGHPI---- 120
Query: 207 LSLYLGGVPDYNIVSPKVKIKSSFIGCIQKVLINNHELNILGEAIQGVNVVNC 259
+ + LGG+ + ++ + + GC+++ + + I A + +C
Sbjct: 121 MRIALGGLLF-PASNLRLPLVPALDGCLRRDSWLDKQAEISASAPTSLR--SC 170
Score = 91.1 bits (226), Expect = 1e-21
Identities = 26/208 (12%), Positives = 68/208 (32%), Gaps = 41/208 (19%)
Query: 313 PEIIHSSGLLHYKFQLHVDFRITGY-EFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIH 371
P +H S + + F +T + + ++T G+I + ++ D+ LG+
Sbjct: 1 PPAVHLSNGPGQEPIAVMTFDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLR 60
Query: 372 NGYAHVMYNLGNGEVLLENNQTKINNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKC 431
+G + + ++ + ++++G WH++ V
Sbjct: 61 DGRPEIQLHNHWAQLTV-GAGPRLDDGRWHQVEVKME----------------------- 96
Query: 432 LSIQRLHRTGKQCLIRIDTDYSMQSISGGKFEQLNTDSGLYVGGVEDIEELTRSKYHHSF 491
G L+ +D + ++ + + +GG+ R +
Sbjct: 97 ---------GDSVLLEVDGEEVLRLRQVS----GHPIMRIALGGLLFPASNLRLPLVPAL 143
Query: 492 KGWISNLILSNDYQVKLPLSRSQGSSCQ 519
G + + + +S S +S +
Sbjct: 144 DGCLRRDSWLD---KQAEISASAPTSLR 168
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E*
3mw3_A*
Length = 220
Score = 109 bits (274), Expect = 1e-27
Identities = 44/205 (21%), Positives = 79/205 (38%), Gaps = 26/205 (12%)
Query: 89 FNGSSYLRYQGLGEQYLSLL--DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYV 146
G + Y+ S L I F ++ +L+ + G+GD++ L+++ +
Sbjct: 16 SKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVD-SSSGLGDYLELHIHQGKI 74
Query: 147 DFTFDLGTGAATLRSSN-PISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSL 205
F++GT + SN I+ G++H +R TR+G +A LQVD +P + G L
Sbjct: 75 GVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGNNDNERL 134
Query: 206 SL-----SLYLGGVPD----------------YNIVSPKVKIKSSFIGCIQKVLINNHE- 243
++ LG V D I+ + F G + + N +
Sbjct: 135 AIARQRIPYRLGRVVDEWLLDKGRQLTIFNSQATIIIGGKEQGQPFQGQLSGLYYNGLKV 194
Query: 244 LNILGEAIQGVNVVNCAHPCITQPC 268
LN+ E + +V P
Sbjct: 195 LNMAAENDANIAIVGNVRLVGEVPS 219
Score = 82.5 bits (203), Expect = 3e-18
Identities = 40/219 (18%), Positives = 78/219 (35%), Gaps = 31/219 (14%)
Query: 318 SSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSK-DFLALGIHNGYAH 376
G + YK+ + R + + + T +++ SS D+L L IH G
Sbjct: 18 GGGQITYKWP--PNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIG 75
Query: 377 VMYNLGNGEVLLENNQTKINNGVWHRLTVHRNF----MVVMHGSSHTRSNKSSKIEFKCL 432
V +N+G ++ +E + IN+G +H + R+ + V R +
Sbjct: 76 VKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGNN------ 129
Query: 433 SIQRLHRTGKQCLIRIDTDYSMQSISGGK-FEQLNTDSGLYVGGVEDIEELTRSKYHHSF 491
+RL ++ R+ + G+ N+ + + +GG + F
Sbjct: 130 DNERLAIARQRIPYRLGRVVDEWLLDKGRQLTIFNSQATIIIGG---------KEQGQPF 180
Query: 492 KGWISNLILSNDYQV------KLPLSRSQGSSCQLTCET 524
+G +S L N +V G + +L E
Sbjct: 181 QGQLSGLYY-NGLKVLNMAAENDANIAIVG-NVRLVGEV 217
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 51.4 bits (124), Expect = 3e-08
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
++C PC++ C+ G C+C G+ G C+ D
Sbjct: 46 NECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTD 84
Score = 50.7 bits (122), Expect = 5e-08
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
D+C +PC H G+C+ C CP GFTG LCQ L
Sbjct: 84 DECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLH 122
Score = 50.7 bits (122), Expect = 6e-08
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
EC PCEH GKCI T GS C C G+TG C+ ++
Sbjct: 7 ECS---LGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVN 46
Score = 29.1 bits (66), Expect = 1.6
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 257 VNCAH---PCITQPCGSG-SCVPLYDGYKCVC 284
C C++ PC + +C+ ++C+C
Sbjct: 39 PRCEIDVNECVSNPCQNDATCLDQIGEFQCIC 70
Score = 27.6 bits (62), Expect = 5.1
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 263 CITQPCG-SGSCVPLYDGYKCVC 284
C + PC +G C+ + ++C C
Sbjct: 86 CASSPCLHNGRCLDKINEFQCEC 108
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 50.9 bits (122), Expect = 7e-08
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
++C PC++GG C + C CP F G CQ +
Sbjct: 98 NECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQYKGG 136
Score = 48.2 bits (115), Expect = 5e-07
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 45 DKCNKTPCEHGGKCI-TTPGSSY-CLCPLGFTGDLCQTRLD 83
D C+ PCE+GG C+ S+ C CP GFT C + ++
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVE 41
Score = 47.0 bits (112), Expect = 2e-06
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 31 DGNKIKGRSKECLEDKCNKTPCEHGGKCITTPGSSY-------CLCPLGFTGDLCQTRLD 83
+ C PC +GG C + C CP GF G CQ ++
Sbjct: 39 VVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNIN 98
Score = 27.0 bits (60), Expect = 8.4
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 257 VNCAH---PCITQPC--GSGSCVPLYDGYKCVCT 285
++C H C +PC G G C L Y C C
Sbjct: 91 IHCQHNINECEVEPCKNG-GICTDLVANYSCECP 123
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 50.0 bits (120), Expect = 1e-07
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD--LQVPQFNG 91
D+C +PC++GG C S C C F G C+T D L NG
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENG 96
Score = 45.0 bits (107), Expect = 6e-06
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 4/43 (9%)
Query: 45 DKCNKTPCEHGG---KCITTPGSSY-CLCPLGFTGDLCQTRLD 83
D E+GG C G+ C C G++
Sbjct: 86 DDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 128
Score = 28.4 bits (64), Expect = 2.8
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 262 PCITQPC-GSGSCVPLYDGYKCVC 284
C + PC GSC Y C C
Sbjct: 49 QCASSPCQNGGSCKDQLQSYICFC 72
>2vh0_B Activated factor XA light chain; serine protease, EGF-like
domain, blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 49.6 bits (119), Expect = 1e-07
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 37 GRSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
+K D+C +PC++ GKC G C C GF G C+
Sbjct: 35 FWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTR 81
Score = 46.1 bits (110), Expect = 2e-06
Identities = 7/39 (17%), Positives = 10/39 (25%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
C+ + C S C C G+T
Sbjct: 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 120
Score = 35.7 bits (83), Expect = 0.010
Identities = 2/34 (5%), Positives = 3/34 (8%)
Query: 50 TPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
C + D
Sbjct: 10 RECMEETCSYEEAREVFEDSDKTNEFWNKYKDGD 43
Score = 29.2 bits (66), Expect = 1.6
Identities = 6/33 (18%), Positives = 7/33 (21%), Gaps = 5/33 (15%)
Query: 257 VNCAH----PCITQPCG-SGSCVPLYDGYKCVC 284
NC C C + C C
Sbjct: 74 KNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSC 106
Score = 28.8 bits (65), Expect = 2.4
Identities = 9/24 (37%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 262 PCITQPC-GSGSCVPLYDGYKCVC 284
C T PC G C Y C C
Sbjct: 44 QCETSPCQNQGKCKDGLGEYTCTC 67
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 48.1 bits (115), Expect = 7e-07
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
D+C PC +GG C S C C +GF G C+
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDAT 87
Score = 40.8 bits (96), Expect = 2e-04
Identities = 5/39 (12%), Positives = 6/39 (15%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
K C C G+ Q
Sbjct: 87 TCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCK 125
Score = 29.6 bits (67), Expect = 1.3
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 252 QGVNVVNCAHPCITQPC-GSGSCVPLYDGYKCVC 284
+ C PC G C + Y+C C
Sbjct: 40 EFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWC 73
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 44.8 bits (107), Expect = 8e-07
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
D+C PC +GG C S C CP GF G C+
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 25.9 bits (58), Expect = 3.5
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 263 CITQPC-GSGSCVPLYDGYKCVCTQ 286
C + PC GSC + Y+C C
Sbjct: 6 CESNPCLNGGSCKDDINSYECWCPF 30
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 48.6 bits (116), Expect = 9e-07
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 37 GRSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
+K D+C +PC++ GKC G C C GF G C+
Sbjct: 35 FWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTR 81
Score = 47.1 bits (112), Expect = 3e-06
Identities = 7/39 (17%), Positives = 10/39 (25%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
C+ + C S C C G+T
Sbjct: 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 120
Score = 39.4 bits (92), Expect = 0.001
Identities = 5/40 (12%), Positives = 7/40 (17%), Gaps = 1/40 (2%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGD-LCQTRLD 83
PC + G D + D
Sbjct: 120 IPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYD 159
Score = 32.8 bits (75), Expect = 0.16
Identities = 5/42 (11%), Positives = 9/42 (21%), Gaps = 5/42 (11%)
Query: 42 CLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
LE +C + C + + D
Sbjct: 7 HLERECMEETCSYEEAR-----EVFEDSDKTNEFWNKYKDGD 43
Score = 29.3 bits (66), Expect = 2.1
Identities = 4/25 (16%), Positives = 6/25 (24%), Gaps = 1/25 (4%)
Query: 263 CITQPCG-SGSCVPLYDGYKCVCTQ 286
C C + C C +
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCAR 108
Score = 28.6 bits (64), Expect = 3.5
Identities = 9/24 (37%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 262 PCITQPCG-SGSCVPLYDGYKCVC 284
C T PC G C Y C C
Sbjct: 44 QCETSPCQNQGKCKDGLGEYTCTC 67
Score = 28.2 bits (63), Expect = 4.7
Identities = 4/30 (13%), Positives = 8/30 (26%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFT 74
D + P E+ + + T
Sbjct: 159 DAADLDPTENPFDLLDFNQTQPERGDNNLT 188
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 45.8 bits (109), Expect = 5e-06
Identities = 12/51 (23%), Positives = 15/51 (29%)
Query: 30 NDGNKIKGRSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQT 80
G + S C K TPCE T+ C GF +
Sbjct: 67 EIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITV 117
Score = 35.8 bits (83), Expect = 0.014
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGD 76
EC E C+ G KCI T GS C CP G+ +
Sbjct: 124 ECQELPGL---CQGG-KCINTFGSFQCRCPTGYYLN 155
Score = 34.6 bits (80), Expect = 0.034
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTR 81
ECL+ C+ TPGS C CP F + +
Sbjct: 5 ECLDPTTC---ISG--NCVNTPGSYICDCPPDFELNPTRVG 40
Score = 33.9 bits (78), Expect = 0.049
Identities = 5/33 (15%), Positives = 8/33 (24%), Gaps = 3/33 (9%)
Query: 44 EDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGD 76
N C + G + C +G
Sbjct: 44 TRSGN---CYLDIRPRGDNGDTACSNEIGVGVS 73
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 44.0 bits (104), Expect = 5e-06
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 45 DKCNKTPCEHGGKCITTPGSS--YCLCPLGFTGDLCQT 80
C++ C +GG C S C CP GF G C+
Sbjct: 49 KSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 47.4 bits (113), Expect = 6e-06
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNGSS 93
C PC H G C + C C G+ G C+ + P+
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGC 54
Score = 35.1 bits (81), Expect = 0.046
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 262 PCITQPC-GSGSCVPLYDGYKCVCTQSCKESH 292
PCI+QPC +GSC GY C C+ + S+
Sbjct: 7 PCISQPCLHNGSCQDSIWGYTCTCSPGYEGSN 38
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 44.3 bits (105), Expect = 7e-06
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 41 ECL---EDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
+CL + + C G CI GS C C G+ G CQ +
Sbjct: 8 QCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVS 53
Score = 38.9 bits (91), Expect = 5e-04
Identities = 7/45 (15%), Positives = 12/45 (26%)
Query: 36 KGRSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQT 80
+ +E C+ C+ G C C G+
Sbjct: 46 RFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLL 90
Score = 28.5 bits (64), Expect = 2.0
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 258 NCAHPCITQPCGSGSCVPLYDGYKCVC 284
HPC + CG G+C+ + C C
Sbjct: 13 PLEHPCASLCCGHGTCIDGIGSFSCDC 39
Score = 27.0 bits (60), Expect = 7.6
Identities = 5/25 (20%), Positives = 8/25 (32%), Gaps = 1/25 (4%)
Query: 263 CITQPCG-SGSCVPLYDGYKCVCTQ 286
C G + C+ +C C
Sbjct: 57 CSLDNGGCTHYCLEEVGWRRCSCAP 81
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 42.5 bits (100), Expect = 8e-06
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 40 KECLEDKCNKTPCEHGGKCITTPGSS--YCLCPLGFTGDLCQTR 81
C C +GG C+ C C +G++GD CQTR
Sbjct: 4 PGCPS--SYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 42.0 bits (98), Expect = 1e-05
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 45 DKCNKTPCEHGGKC-----ITTPGSSYCLCPLGFTGDLCQTRL 82
+ KT C +GG+C ++ P C C GFTG C +
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 49
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 1e-05
Identities = 84/452 (18%), Positives = 129/452 (28%), Gaps = 175/452 (38%)
Query: 88 QFNGSSYLRYQGLGEQYLS-LLDLTIVFKAIEPNGILLYNGHRADGVGDFIA------LY 140
F G QG + Y L DL ++ Y+ VGD I
Sbjct: 159 IFGG------QGNTDDYFEELRDL---YQT--------YHVL----VGDLIKFSAETLSE 197
Query: 141 LNDRYVDFTFDLGTGAATLRSSNPISLGEWHKLRLTRTGR---HAYLQVDRFPSS----- 192
L +D G +++ EW L YL P S
Sbjct: 198 LIRTTLDAEKVFTQG---------LNILEW----LENPSNTPDKDYL--LSIPISCPLIG 242
Query: 193 --QI-----------LSPGPFTQLSLSLSLYLGGV------------PDYNIVSPKVKIK 227
Q+ +PG + + G+ + + K I
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA-IT 301
Query: 228 SSF-IGC---------------IQKVLINNHE-----LNILG---EAIQG-VNVVNCAHP 262
F IG ++ L NN L+I E +Q VN N +H
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN-SH- 359
Query: 263 CITQPCGSGSCVPLYDGYKC-VCT---QSCK--ESHLTEVMCAS---------------F 301
P G + L +G K V + QS L + S F
Sbjct: 360 ---LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 302 DHGASFL--------HYLDP--EIIHSSGLLHYKFQLHV-DFRITGYEFN--IDMRIKTS 348
+ FL H L P ++I + L+ + D +I Y+ D+R+ +
Sbjct: 417 SN--RFLPVASPFHSHLLVPASDLI-NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 349 SSSGLIL---------WTGSSQSKDFLALGIHNGYAHVMYNLGNGEVLLENNQTKIN-NG 398
S S I+ W ++Q K H++ + G G T N +G
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFK----------ATHIL-DFGPGGASGLGVLTHRNKDG 522
Query: 399 VWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFK 430
R V++ G+ N FK
Sbjct: 523 TGVR--------VIVAGTLDI--NPDDDYGFK 544
Score = 34.3 bits (78), Expect = 0.11
Identities = 42/258 (16%), Positives = 75/258 (29%), Gaps = 88/258 (34%)
Query: 305 ASFLHYLDPEIIHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSKD 364
FL Y+ + S + + L++ EF L + D
Sbjct: 62 GKFLGYVSSL-VEPSKVGQFDQVLNLCLT----EFENC-----------YL-----EGND 100
Query: 365 FLALGIHNGYAHVMYNLGNGEVLLENNQTKINNGVWHRLTVHRNFMVVMHGSSHTRSNKS 424
IH A LL+ N T + + +N++ + KS
Sbjct: 101 -----IHALAAK----------LLQENDTTLVK----TKELIKNYITARIMAKRPFDKKS 141
Query: 425 SKIEFKCLSIQRLHRTGKQCLIRIDTDYSM---QSISGGKFEQL----NTDSGLYVGGVE 477
+ F+ + G ++ ++ Q + FE+L T Y V
Sbjct: 142 NSALFRAV------GEGN---AQL---VAIFGGQGNTDDYFEELRDLYQT----YHVLVG 185
Query: 478 DI--------EELTRSK------YHHSF--KGWISN--LILSNDY----QVKLPLSR-SQ 514
D+ EL R+ + W+ N DY + PL Q
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 515 GSSCQLTCETL--NTGQV 530
+ +T + L G++
Sbjct: 246 LAHYVVTAKLLGFTPGEL 263
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 40.2 bits (94), Expect = 5e-05
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 44 EDKCN---KTPCEHGGKCITTPGSS--YCLCPLGFTGDLCQTR 81
+ +C C H G C+ C C +G+ G+ CQ R
Sbjct: 3 DSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 45
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 42.7 bits (101), Expect = 7e-05
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 47 CNKTPCEHGGKCITTPGSSY-CLCPLGFTGDLCQ 79
PC +GG C T Y C CP G++G C+
Sbjct: 135 GTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
Score = 42.0 bits (99), Expect = 1e-04
Identities = 8/48 (16%), Positives = 11/48 (22%), Gaps = 2/48 (4%)
Query: 44 EDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNG 91
C G G+ C G+ G C + Q
Sbjct: 31 NKFCRPRDDFFGHYACDQNGN--KTCMEGWMGPECNRAICRQGCSPKH 76
Score = 40.8 bits (96), Expect = 2e-04
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
DKC P G C CLC + G LC L+
Sbjct: 97 DKCIPHPGCVHGICN---EPWQCLCETNWGGQLCDKDLN 132
Score = 39.3 bits (92), Expect = 0.001
Identities = 8/45 (17%), Positives = 10/45 (22%), Gaps = 3/45 (6%)
Query: 47 CNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNG 91
H G G S C + G C + F
Sbjct: 2 RGSHHHHHHGSIE---GRSAVTCDDYYYGFGCNKFCRPRDDFFGH 43
Score = 38.9 bits (91), Expect = 0.001
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 42 CLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
C C + G C PG C C G+ G C
Sbjct: 63 CNRAICRQGCSPKHGSC-KLPGD--CRCQYGWQGLYCD 97
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 39.9 bits (93), Expect = 7e-05
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 45 DKCNKTPCEHGGKCITTPGSS----YCLCPLGFTGDLCQTR 81
+ + C + C + C C +GF G C+ +
Sbjct: 9 ETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 42.4 bits (100), Expect = 7e-05
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 42 CLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
C C T C G+C+ T + C C GF+G C+
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 44.1 bits (104), Expect = 7e-05
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 40 KECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNGS 92
++C KC PC +GGKCI G S C C G+ GDLC + +G+
Sbjct: 240 EQCEISKCP-QPCRNGGKCI---GKSKCKCSKGYQGDLCSKPVCEPGCGAHGT 288
Score = 40.6 bits (95), Expect = 8e-04
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 44 EDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQT 80
+ T C +GG C C+CP G G+ C+
Sbjct: 211 DKANCSTTCFNGGTCF---YPGKCICPPGLEGEQCEI 244
Score = 40.6 bits (95), Expect = 9e-04
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 44 EDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
+ C G C + C C G+ G C R +
Sbjct: 275 SKPVCEPGCGAHGTCH---EPNKCQCQEGWHGRHCNKRYE 311
Score = 40.2 bits (94), Expect = 0.001
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 40 KECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNGS 92
K C + +C C +GG C C CP GF G C+ L G
Sbjct: 144 KTCQQAECPG-GCRNGGFCN---ERRICECPDGFHGPHCEKALCTPRCMNGGL 192
Score = 37.9 bits (88), Expect = 0.007
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 44 EDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNGS 92
E C +GG C+ +C+CP GF G C G+
Sbjct: 179 EKALCTPRCMNGGLCV---TPGFCICPPGFYGVNCDKANCSTTCFNGGT 224
Score = 34.4 bits (79), Expect = 0.083
Identities = 8/59 (13%), Positives = 14/59 (23%), Gaps = 1/59 (1%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSY-CLCPLGFTGDLCQTRLDLQVPQFNGSSYLRYQ 98
CL + E + + G++ CQ + G R
Sbjct: 108 PCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCRNGGFCNERRI 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 5e-04
Identities = 47/271 (17%), Positives = 82/271 (30%), Gaps = 68/271 (25%)
Query: 16 VRVFRHRWDAWIQLNDGNKIKGRSKECLEDKCNKTPCEHGGKC------------ITTPG 63
+R WD W +N +K+ + L P E+ K I T
Sbjct: 337 IRDGLATWDNWKHVNC-DKLTTIIESSLN---VLEPAEY-RKMFDRLSVFPPSAHIPTI- 390
Query: 64 SSYCLCPLGFTGDLCQTRLDLQVPQFNGSSYLRYQGLGEQYLSLLDLTIVFKAIEPNGIL 123
L + F + + + + S + Q S+ + + K N
Sbjct: 391 ---LLSLIWFDVIKSDVMVVVN--KLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEYA 444
Query: 124 L-------YNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWHKLRLT 176
L YN + D I YL D+Y ++ +G H +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYL-DQYF-YSH-IG----------------HHLKNIE 485
Query: 177 RTG-----RHAYLQVD-RFPSSQI-------LSPGPFTQLSLSLSLYLGGVPDYNIVSPK 223
R +L D RF +I + G L Y + D N +
Sbjct: 486 HPERMTLFRMVFL--DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD-NDPKYE 542
Query: 224 VKIKS--SFIGCIQKVLINNHELNILGEAIQ 252
+ + F+ I++ LI + ++L A+
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIALM 573
Score = 41.8 bits (97), Expect = 6e-04
Identities = 38/263 (14%), Positives = 79/263 (30%), Gaps = 83/263 (31%)
Query: 309 HYLDPEIIHSSGLLHYKFQ--LHV---------DFR---------ITGYEFNIDMRIKTS 348
H++D E G Y+++ L V D + ++ E + + K +
Sbjct: 5 HHMDFET----GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 349 -SSSGLILWT----GSSQSKDFLALGIHNGYAHVMYNLGNGEVLLENNQTKINNGVWHRL 403
S + + WT + F+ + Y +M + E Q + ++
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT-----EQRQPSMMTRMYIE- 114
Query: 404 TVHRNFMVVMHGSSH-------TRSNKSSKIEFKCLSIQRLHR---------TGKQCLIR 447
R+ ++ + +R K+ + L R + +GK +
Sbjct: 115 --QRD---RLYNDNQVFAKYNVSRLQPYLKLR-QALLELRPAKNVLIDGVLGSGKTWVA- 167
Query: 448 IDT--DYSMQS--------ISGGK-------FEQLNTDSGLYV----GGVEDIEELTRSK 486
+D Y +Q ++ E L L + + K
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK---LLYQIDPNWTSRSDHSSNIK 224
Query: 487 YH-HSFKGWISNLILSNDYQVKL 508
HS + + L+ S Y+ L
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCL 247
Score = 37.5 bits (86), Expect = 0.013
Identities = 79/557 (14%), Positives = 156/557 (28%), Gaps = 199/557 (35%)
Query: 13 WNTVRVF--RHRW---------DAWIQLNDGNKI-----KGRSKECL-EDKCNKTPCEHG 55
+N +VF + A ++L + G K + D C +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 56 ----------GKCITTPGSSYCLCPL-----GFTGDLCQTRLD----LQVPQFNGSSYLR 96
C +P + L L + R D +++ + + LR
Sbjct: 180 MDFKIFWLNLKNC-NSPET--VLEMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELR 235
Query: 97 YQGLGEQYL-SLLDL-----TIVFKAIEPN-GILLYNGHRADGVGDFIA------LYLND 143
+ Y LL L + A + ILL R V DF++ + L+
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT--RFKQVTDFLSAATTTHISLDH 293
Query: 144 RYVDFTFD---------LGTGAATLRSS----NP--ISL-GEWHKLRLTRTGRHAYLQVD 187
+ T D L L NP +S+ E + L ++ D
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 188 RFP-----SSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVKIKSSFIGCIQKVLINNH 242
+ S +L P + ++ LS++ P I + +L
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVF----PP------SAHIPT-------ILL---- 392
Query: 243 ELNILGEAIQGVNVVNCAHPCITQPCGSGSCVPLYDGYKCVCTQSCKESHLTEVMCASFD 302
+++ + +V+ + + + KES ++
Sbjct: 393 --SLIWFDVIKSDVMVVVNKLHK---------------YSLVEKQPKESTIS-------- 427
Query: 303 HGASFLH--YLDPEI-------IHSSGLLHYKFQLHVDFRITGYEFNIDMRIKTSSSSGL 353
+ YL+ ++ +H S + HY D
Sbjct: 428 -----IPSIYLELKVKLENEYALHRSIVDHYNIPKTFD---------------------- 460
Query: 354 ILWTGSSQSKDFLALGIHNGY--AHVMYNLGNGE----------VLLENN--QTKINNG- 398
D Y +H+ ++L N E V L+ + KI +
Sbjct: 461 -SDDLIPPYLD--------QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 399 -VW----------HRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTGKQCLIR 447
W +L ++ ++ N + ++F + L + L+R
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN--AILDFLPKIEENLICSKYTDLLR 569
Query: 448 IDTDYSMQSISGGKFEQ 464
I ++ + FE+
Sbjct: 570 I----ALMAEDEAIFEE 582
>3ca7_A Protein spitz; argos, EGF, developmental protein,
differentiation, EGF-like domain, endoplasmic
reticulum, glycoprotein, golgi apparatus; 1.50A
{Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Length = 52
Score = 36.8 bits (85), Expect = 6e-04
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 52 CEHGGKCITTPGSS----YCLCPLGFTGDLCQTR 81
C + C + C C +GF G C+ +
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 40.8 bits (95), Expect = 8e-04
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 47 CNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQT 80
T C + G C G C+CP GF G C+
Sbjct: 200 HLCTACMNNGVCHEDTGE--CICPPGFMGRTCEK 231
Score = 37.8 bits (87), Expect = 0.007
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 37 GRSKECLEDKC-NKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTR 81
+++C + C+ C+ P C C G+ G C
Sbjct: 236 HTFGRTCKERCSGQEGCKSYVFCLPDPYG--CSCATGWKGLQCNEA 279
Score = 37.8 bits (87), Expect = 0.007
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 44 EDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTR 81
D + C +G C G CLC G+ G C+
Sbjct: 287 PDCKLRCSCNNGEMCDRFQG---CLCSPGWQGLQCERE 321
Score = 30.1 bits (67), Expect = 1.9
Identities = 3/41 (7%), Positives = 8/41 (19%), Gaps = 1/41 (2%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPL-GFTGDLCQT 80
+ + G +C G+ +
Sbjct: 320 REGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEE 360
Score = 28.9 bits (64), Expect = 4.4
Identities = 7/41 (17%), Positives = 10/41 (24%), Gaps = 2/41 (4%)
Query: 42 CLEDKCNKTPCEHGGKCITTP--GSSYCLCPLGFTGDLCQT 80
+D + GG T+ C G C
Sbjct: 160 QPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNH 200
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 39.3 bits (92), Expect = 8e-04
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQT 80
D+C +PC +G C +PGS C C T D +T
Sbjct: 5 DECESSPCING-VCKNSPGSFICECSSESTLDPTKT 39
Score = 36.6 bits (85), Expect = 0.006
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGD 76
EC C++G C+ T GS C CP G T D
Sbjct: 109 ECEVFPG---VCKNG-LCVNTRGSFKCQCPSGMTLD 140
Score = 29.2 bits (66), Expect = 1.6
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 47 CNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
C+ G C T +C G++ D
Sbjct: 72 CSSLGAAWGSPC--TLCQVDPICGKGYSRIKGTQCED 106
Score = 28.1 bits (63), Expect = 4.9
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 263 CITQPCGSGSCVPLYDGYKCVC 284
C + PC +G C + C C
Sbjct: 7 CESSPCINGVCKNSPGSFICEC 28
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 38.6 bits (90), Expect = 0.001
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGD 76
EC + C+ C T GS C C G+
Sbjct: 98 ECSS---GQHQCDSSTVCFNTVGSYSCRCRPGWKPR 130
Score = 35.6 bits (82), Expect = 0.013
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFT 74
EC +K C C T GS C+C G+
Sbjct: 46 ECATL--SKVSCGKFSDCWNTEGSYDCVCSPGYE 77
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 36.8 bits (86), Expect = 0.001
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGD 76
D+C + G+CI T GS C CP G+
Sbjct: 6 DECKEPDVCKHGQCINTDGSYRCECPFGYILA 37
Score = 33.7 bits (78), Expect = 0.016
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGD 76
D+C+ G C G C C GF
Sbjct: 45 DECSVGNPCGNGTCKNVIGGFECTCEEGFEPG 76
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens}
PDB: 2rhp_A*
Length = 634
Score = 40.4 bits (94), Expect = 0.001
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 45 DKCNKTPCEHGGKCI-TTPGSSYCL-CPLGFTGD 76
D C PC G +C GS C CP+GF G+
Sbjct: 4 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGN 37
Score = 36.5 bits (84), Expect = 0.023
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCL-CPLGFTGD 76
EC +C+ T +CL CP + G+
Sbjct: 46 ECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGN 82
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.4 bits (88), Expect = 0.002
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 202 QLSLSLSLYLGGVPDYNIVSPKVKIKSS 229
+L SL LY D +P + IK++
Sbjct: 24 KLQASLKLY---ADD---SAPALAIKAT 45
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615
antibody, FAB, ternary complex, immune SY hydrolase;
HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP:
g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A*
3laq_A* 1kdu_A
Length = 122
Score = 36.7 bits (84), Expect = 0.003
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 52 CEHGGKCITTPGSS---YCLCPLGFTGDLCQTRLDLQVPQFNGSSY 94
C +GG C++ S +C CP F G C+ + NG Y
Sbjct: 3 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGHFY 48
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan
syndrome, connective tissue, extracellular matrix,
structural protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1
Length = 86
Score = 35.3 bits (82), Expect = 0.005
Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGD 76
EC D C G C T GS C CP G
Sbjct: 48 ECQRDPL---LCRGG-VCHNTEGSYRCECPPGHQLS 79
Score = 35.0 bits (81), Expect = 0.008
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTR 81
EC C G +C+ TPG C C G+ +
Sbjct: 5 ECRISPDL---CGRG-QCVNTPGDFECKCDEGYESGFMMMK 41
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 36.7 bits (85), Expect = 0.007
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 42 CLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
C C C G+C+ T G+ C C GF G C+
Sbjct: 117 CYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 154
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 36.9 bits (84), Expect = 0.007
Identities = 10/33 (30%), Positives = 10/33 (30%)
Query: 44 EDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGD 76
E C C G C C GFT D
Sbjct: 139 ETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFD 171
Score = 33.5 bits (75), Expect = 0.092
Identities = 6/43 (13%), Positives = 10/43 (23%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
E G+ + C+C G T +
Sbjct: 1 EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEE 43
Score = 29.6 bits (65), Expect = 1.7
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 36 KGRSKECLEDKCNKTPCEHGGK----CITTPGSSYCLCPLGFTGDLCQ 79
C+ D C C G+ ++ S+ C C +G +
Sbjct: 83 TLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPED 130
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 37.0 bits (85), Expect = 0.014
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 32 GNKIKGRSKECLEDKC---NKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
G I G+ EC C N C G+ + G C C GF G CQ
Sbjct: 504 GKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGK--CRCHPGFEGSACQCERT 556
Score = 32.4 bits (73), Expect = 0.47
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
C + +++ C G C C G+ G C+ +
Sbjct: 426 RCRDQSRDRSLCHGKGFLE----CGICRCDTGYIGKNCECQTQ 464
Score = 32.0 bits (72), Expect = 0.61
Identities = 8/39 (20%), Positives = 9/39 (23%), Gaps = 5/39 (12%)
Query: 42 CLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQT 80
C E +PC C G G C
Sbjct: 590 CQECPGCPSPCGKYISCAEC-----LKFEKGPFGKNCSA 623
Score = 32.0 bits (72), Expect = 0.63
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 47 CNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQT 80
+ C G+C + C C G+ LCQ
Sbjct: 563 PRRVECSGRGRCRC----NVCECHSGYQLPLCQE 592
Score = 28.5 bits (63), Expect = 6.2
Identities = 4/37 (10%), Positives = 7/37 (18%), Gaps = 3/37 (8%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTR 81
G C C + +T +
Sbjct: 627 GLQLSNNPVKGRTCK---ERDSEGCWVAYTLEQQDGM 660
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 36.7 bits (84), Expect = 0.015
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 12/63 (19%)
Query: 26 WIQLNDGNKIKGRSKECLEDKCN---------KTPCEHGGKCITTPGSSYCLCPLGFTGD 76
W + KG + C+ + C++GG C + CLCP +TG
Sbjct: 338 WSPGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGTCH---NNVRCLCPAAYTGI 394
Query: 77 LCQ 79
LC+
Sbjct: 395 LCE 397
Score = 30.2 bits (67), Expect = 2.1
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 259 CAHPCITQPCGSGSCVPLYDGYKCVCTQSCKESH 292
C +P GS +P+ G C S
Sbjct: 329 CKKNYQGRPWSPGSYLPIPKGAANACIPSISSIG 362
Score = 29.8 bits (66), Expect = 2.3
Identities = 10/44 (22%), Positives = 11/44 (25%), Gaps = 4/44 (9%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDL 84
KCN H C+ C C TG C
Sbjct: 293 VRGRCKCN----LHATVCVYDNSKLTCECEHNTTGPDCGKCKKN 332
Score = 29.4 bits (65), Expect = 3.4
Identities = 9/31 (29%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTG 75
C K CE G C + G P G
Sbjct: 394 ILCEKLRCEEAGSCGSDSGQ--GAPPHGTHH 422
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 36.0 bits (82), Expect = 0.016
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 51 PCEHGGKCITTPGSSYCLCPLGFTGDLCQTRL 82
C +GG C C CP GF G C+
Sbjct: 154 GCRNGGFCN---ERRICECPDGFHGPHCEGTK 182
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 35.2 bits (81), Expect = 0.022
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 42 CLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
C C C G+C+ + C C +G+ G CQ
Sbjct: 117 CYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains,
anticoagulant complex, antifibrinolytic complex,
hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A
{Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB:
3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A
Length = 118
Score = 34.3 bits (79), Expect = 0.025
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 45 DKCNKTPCEHGGKCI-TTPGSSYCLCPLGFTGDLCQTR 81
D C + CE+ C S C+C GF +
Sbjct: 5 DPCFRANCEYQ--CQPLDQTSYLCVCAEGFAPIPHEPH 40
Score = 33.9 bits (78), Expect = 0.030
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 30 NDGNKIKGRSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGD 76
+G + CN+T C C + C CP G+ D
Sbjct: 29 AEGFAPIPHEPHRCQMFCNQTACPAD--CDPN-TQASCECPEGYILD 72
Score = 31.6 bits (72), Expect = 0.20
Identities = 9/36 (25%), Positives = 11/36 (30%), Gaps = 6/36 (16%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGD 76
EC N C C PG+ C+C
Sbjct: 82 ECE----NGGFCSGV--CHNLPGTFECICGPDSALA 111
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease;
NMR {Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 32.0 bits (73), Expect = 0.030
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 7/39 (17%)
Query: 41 ECLEDKCNKT-----PCEHGGKCITTPGSSYCLCPLGFT 74
EC + C+H C G +C C G+
Sbjct: 6 ECASRSKSGEEDPQPQCQH--LCHNYVGGYFCSCRPGYE 42
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 33.5 bits (76), Expect = 0.033
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 44 EDKCNKTPCEHGGKCI-TTPGSSYCLCPLGFTGD 76
E +C T C G+ C L F D
Sbjct: 4 EHRCIDTNVPENAACYRYLDGTEEWRCLLYFKED 37
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like
domain, repeat; HET: ABA; NMR {Mus musculus} SCOP:
g.3.11.1
Length = 45
Score = 31.6 bits (71), Expect = 0.039
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 52 CEHGGKCITTPG--SSYCLCPLGFTGDLCQTR 81
C +GG + S C C +G++GD CQTR
Sbjct: 11 CLNGGVXMHIESLDSYTCNCVIGYSGDRCQTR 42
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding
protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A
1z78_A
Length = 209
Score = 34.7 bits (79), Expect = 0.041
Identities = 21/134 (15%), Positives = 40/134 (29%), Gaps = 10/134 (7%)
Query: 110 LTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDL---GTGAATLRSSNPIS 166
L + ++ L R D G ++ N + L G ++
Sbjct: 66 LLASLRQMKKTRGTLLALERKDHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALLA 125
Query: 167 LGEWHKLRLTRTGRHAYLQVD-RFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVK 225
G+W + L A L +D + L + + L+ + K
Sbjct: 126 TGQWKSITLFVQEDRAQLYIDCEKMENAELDVPIQSVFTRDLASIAR------LRIAKGG 179
Query: 226 IKSSFIGCIQKVLI 239
+ +F G +Q V
Sbjct: 180 VNDNFQGVLQNVRF 193
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS;
2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4
g.3.11.4
Length = 105
Score = 33.2 bits (75), Expect = 0.045
Identities = 9/37 (24%), Positives = 10/37 (27%), Gaps = 1/37 (2%)
Query: 41 ECLEDKCNKTPCEHGGKCI-TTPGSSYCLCPLGFTGD 76
KC T C G+ C LGF
Sbjct: 7 MSSAHKCIDTNVPENAACYRYLDGTEEWRCLLGFKEV 43
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 32.6 bits (75), Expect = 0.054
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFT 74
EC + C C PG C CP G+
Sbjct: 5 ECSL---KPSICGTA-VCKNIPGDFECECPEGYR 34
Score = 30.7 bits (70), Expect = 0.21
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLC--PLGFT 74
D+C++ C C+ PG C C GF
Sbjct: 46 DECSENMCAQ--LCVNYPGGYTCYCDGKKGFK 75
>1lr7_A Follistatin, FS1; heparin-binding, cystine-rich, sucrose
octasulphate, hormone/growth factor complex; HET: SO4;
1.50A {Rattus norvegicus} SCOP: g.3.11.3 g.68.1.1 PDB:
1lr8_A* 1lr9_A
Length = 74
Score = 31.4 bits (71), Expect = 0.11
Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 262 PCITQPCGSGS-CVPLYDGY-KCVCTQSCKESHLTEVMCAS 300
C CG G C +CVC C +C
Sbjct: 3 TCENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGL 43
Score = 26.8 bits (59), Expect = 3.9
Identities = 7/27 (25%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 45 DKCNKTPCEHGGKCITT-PGSSYCLCP 70
+ C C G KC C+C
Sbjct: 2 ETCENVDCGPGKKCRMNKKNKPRCVCA 28
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS
HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 34.3 bits (78), Expect = 0.11
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 45 DKCNKTPCEHGGKCITTPGSSY-CLC-PLGFTGDLCQTR 81
+ C PC++ G+C++T Y C C GF G+ C T
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTP 40
Score = 31.2 bits (70), Expect = 0.84
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 260 AHPCITQPCG-SGSCVPL-YDGYKCVCTQS 287
A+PC + PC G C+ +D YKC CT++
Sbjct: 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRT 30
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET:
SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A
2ouj_A
Length = 251
Score = 33.6 bits (76), Expect = 0.12
Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 10/134 (7%)
Query: 110 LTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGT-GAATLRSSNPISL- 167
L + ++ L R D G ++ N + L G + S L
Sbjct: 76 LLASLRQMKKTRGTLLALERKDHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALLA 135
Query: 168 -GEWHKLRLTRTGRHAYLQVD-RFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVK 225
G+W + L A L +D + L + + L+ + K
Sbjct: 136 TGQWKSITLFVQEDRAQLYIDCEKMENAELDVPIQSVFTRDLASIAR------LRIAKGG 189
Query: 226 IKSSFIGCIQKVLI 239
+ +F G +Q V
Sbjct: 190 VNDNFQGVLQNVRF 203
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 31.7 bits (71), Expect = 0.14
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 44 EDKCNKTPCEHGGKC-ITTPGSSYCLCPLGFTGD 76
+ +C K C C C C L + +
Sbjct: 4 QHQCVKKQCPQNSGCFRHLDEREECKCLLNYKQE 37
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 30.8 bits (69), Expect = 0.16
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 30 NDGNKIKGRSKECLEDKCNKTP---CEHGGKC--ITTPGSSYCLCPLGFTGDLCQ 79
+ K KG+ D C + C HG +C + + C+C G+ G+ C
Sbjct: 23 HGKRKKKGKGLGKKRDPCLRKYKDFCIHG-ECKYVKELRAPSCICHPGYHGERCH 76
>2w2n_E LDL receptor, low-density lipoprotein receptor;
hydrolase-receptor complex, PCSK9, proprotein converta
low-density lipoprotein receptor, EGF; 2.30A {Homo
sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E
3gcx_E 1hz8_A 1i0u_A 1hj7_A
Length = 107
Score = 31.5 bits (72), Expect = 0.17
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFT 74
ECL++ C + C CLCP GF
Sbjct: 31 ECLDNNGG---CSY--VCNDLKIGYECLCPDGFQ 59
Score = 29.6 bits (67), Expect = 0.78
Identities = 0/25 (0%), Positives = 0/25 (0%)
Query: 55 GGKCITTPGSSYCLCPLGFTGDLCQ 79
Sbjct: 3 HHHHHHPMSDYDIPTTENLYFQGAM 27
Score = 29.2 bits (66), Expect = 1.2
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 6/34 (17%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFT 74
EC + C C+ G C C GF
Sbjct: 71 ECQDP----DTCSQ--LCVNLEGGYKCQCEEGFQ 98
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 33.5 bits (76), Expect = 0.20
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 34 KIKGRSKECLEDKCNKT---PCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
KI G+ EC + C + C G+C G CLC +TG C
Sbjct: 515 KITGKYCECDDFSCVRYKGEMCSGHGQCSC--GD--CLCDSDWTGYYCNCTTR 563
Score = 30.8 bits (69), Expect = 1.2
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
C + + G G C C G+ G C+
Sbjct: 436 ACQAQAEPNSHRCNNGNGTFECGV--CRCGPGWLGSQCE 472
Score = 30.4 bits (68), Expect = 1.9
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 28 QLNDGNKIKGRSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQT 80
+ ++ + + EC + C G+C+ G C+C G +
Sbjct: 472 ECSEEDYRPSQQDECSPREGQ-PVCSQRGECLC--GQ--CVCHSSDFGKITGK 519
>3p5b_L Low density lipoprotein receptor variant; B-propellor,
convertase, hydrolase-lipid binding P complex; 3.30A
{Homo sapiens} PDB: 3p5c_L
Length = 400
Score = 32.9 bits (74), Expect = 0.24
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFT 74
ECL++ C H C CLCP GF
Sbjct: 2 ECLDNNGG---CSH--VCNDLKIGYECLCPDGFQ 30
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM;
2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 32.7 bits (74), Expect = 0.31
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 45 DKCNKTPCEHGGKCITTPGSSY-CLC-PLGFTGDLCQTR 81
+ C PC+H G C+ Y C C G++G C
Sbjct: 3 NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIP 41
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 32.6 bits (74), Expect = 0.37
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 42 CLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
C KC C HGG C+ + CLC G+ G C+
Sbjct: 421 CRTAKCE-PACRHGGVCVR---PNKCLCKKGYLGPQCE 454
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain,
kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP:
g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Length = 145
Score = 31.1 bits (69), Expect = 0.39
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 47 CNKTPCEHGGKCITTPGSS---YCLCPLGFTGDLCQ 79
+ C +GG C++ S +C CP F G C+
Sbjct: 10 PSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE 45
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 28.9 bits (65), Expect = 0.50
Identities = 5/23 (21%), Positives = 7/23 (30%), Gaps = 2/23 (8%)
Query: 52 CEHGGKCITTPGSSYCLCPLGFT 74
C+ C C C G+
Sbjct: 8 CDQ--FCREERSEVRCSCAHGYV 28
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Length = 46
Score = 28.2 bits (63), Expect = 0.74
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 52 CEHGGKCITTPGSS--YCLCPLGFTGDLCQ 79
C HG +CI S YC C +G+TG C+
Sbjct: 14 CLHG-QCIYLVDMSQNYCRCEVGYTGVRCE 42
>1skz_A Antistasin; factor XA inhibitor, serine protease inhibitor,
thrombosis; 1.90A {Haementeria officinalis} SCOP:
g.3.15.1 g.3.15.1
Length = 119
Score = 30.0 bits (67), Expect = 0.75
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 2/51 (3%)
Query: 29 LNDGNKIKGRSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
G + E ++ C+ + C G C C C +
Sbjct: 44 SRYGCEFCKCRLEPMKATCDISECPEGMMCSRLTNK--CDCKIDINCRKTC 92
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe
disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus
musculus} PDB: 3zr6_A*
Length = 656
Score = 31.4 bits (70), Expect = 0.75
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 330 VDFRITGYEFNIDMRIKTSSSSGLILWTGSSQSKDFLALGIHNGYAHVMYNLGN------ 383
D T D+ I+T S G+ + +K + + G ++ G+
Sbjct: 524 GDHHWTNMTVQCDVYIETPRSGGV--FIAGRVNKGGILIRSATGVFFWIFANGSYRVTAD 581
Query: 384 --GEVLLENNQTKINNGVWHRLTVH 406
G + + + W+ LT+
Sbjct: 582 LGGWITYASGHADVTAKRWYTLTLG 606
>3hh2_C Follistatin; protein-protein complex, TB domain, cystine knot
motif, TGF- fold, disulfide linked dimer, CLE PAIR of
basic residues, cytokine; HET: CIT; 2.15A {Homo sapiens}
PDB: 2b0u_C* 2p6a_D
Length = 288
Score = 31.1 bits (69), Expect = 0.77
Identities = 12/51 (23%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 252 QGVNVVNCAHPCITQPCGSGS-CVPLYDG-YKCVCTQSCKESHLTEVMCAS 300
N + C C CG G C +CVC C +C
Sbjct: 55 GAPNCIPCKETCENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGL 105
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted,
protease, hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 28.1 bits (63), Expect = 0.90
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 52 CEHGGKCITTPGSSYCLCPLGFT 74
C+ C S C C G+T
Sbjct: 11 CDQ--FCHEEQNSVVCSCARGYT 31
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease,
polymorphism, protease, zinc; 2.30A {Homo sapiens} PDB:
1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 27.9 bits (62), Expect = 1.1
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 35 IKGRSKECLEDKCNKTPCEHGGKC--ITTPGSSYCLCPLGFTGDLCQTRLDL 84
+ +C + + C HG C + C+C G+ G C+ DL
Sbjct: 1 VVSHFNDCPDS--HTQFCFHG-TCRFLVQEDKPACVCHSGYVGARCE-HADL 48
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 30.9 bits (69), Expect = 1.1
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 40 KECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFT 74
+ C + C KC G+ C C G+
Sbjct: 4 ENCNVNNG---GCAQ--KCQMIRGAVQCTCHTGYR 33
Score = 29.4 bits (65), Expect = 3.0
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 28 QLNDGNKIKGRSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGD 76
+L + + EC E+ C G C + G+ C C G+
Sbjct: 33 RLTEDGRTCQDVNECAEE----GYCSQG--CTNSEGAFQCWCEAGYELR 75
Score = 28.6 bits (63), Expect = 5.5
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 46 KCNKTPCEHGGKCITTPGSSYCLCPLGFT 74
N C H C+ + + C CP GF
Sbjct: 351 GDNNGGCTHL--CLPSGQNYTCACPTGFR 377
>4azz_A Levanase; hydrolase; 1.70A {Bacillus subtilis}
Length = 172
Score = 29.9 bits (67), Expect = 1.3
Identities = 8/73 (10%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 337 YEFNIDMRIKTSSSSGL--ILWTGSSQSKDFLALGIH--NGYAHVMYNLGNGEVLLENNQ 392
+ + D+ IK + G +++ +K+ + + ++ +
Sbjct: 45 FTYESDITIKDGNGRGAGALMFRSDKDAKNGYLANVDAKHDLVKFFKFENGAASVIAEYK 104
Query: 393 TKINNGVWHRLTV 405
T I+ + L
Sbjct: 105 TPIDVNKKYHLKT 117
>3sek_C Follistatin-related protein 3; protein-protein complex, TB domain,
cystine knot motif, TGF- fold, disulfide linked dimer,
follistatin domain (FSD); HET: NAG; 2.40A {Homo sapiens}
PDB: 2kcx_A
Length = 209
Score = 30.3 bits (67), Expect = 1.3
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 253 GVNVVNCAHPCITQPCGSGS-CVPLYDGYKCVCTQSCKESHLTEVMCAS 300
V+ + C C CG G C L +C C C +C S
Sbjct: 54 LVHCLPCKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGS 102
Score = 29.9 bits (66), Expect = 1.7
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 44 EDKCNKTPCEHGGKCITTPGSSYCLCP 70
+D C+ C G C G C C
Sbjct: 61 KDSCDGVECGPGKACRMLGGRPRCECA 87
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding;
HET: NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 30.6 bits (68), Expect = 1.3
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 6/36 (16%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGD 76
EC E+ C C + G+ C C G+
Sbjct: 3 ECAEE----GYCSQ--GCTNSEGAFQCWCEAGYELR 32
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 30.6 bits (68), Expect = 1.6
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 14 NTVRVFRHRWDAWIQLNDGNKIKGRSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGF 73
V + + ++ + +++ G + C H C+ P C CP+GF
Sbjct: 554 REVIIDQLPDLMGLKATNVHRVIGSNPCA----EENGGCSHL--CLYRPQGLRCACPIGF 607
Query: 74 T 74
Sbjct: 608 E 608
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 30.6 bits (69), Expect = 1.7
Identities = 6/36 (16%), Positives = 9/36 (25%)
Query: 45 DKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQT 80
+ K+ G + S C F D
Sbjct: 267 TRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFL 302
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 30.4 bits (68), Expect = 1.8
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 38 RSKECLEDKCN--KTPCEHGGKCITTPGSSY-CLCPLGFTGDLCQTRLDLQVPQFNGSSY 94
R + C +C +C+ G +Y + +G CQ Q P + +
Sbjct: 234 RWELCDIPRCTTPPPSSGPTYQCLKGTGENYRGNVAVTVSGHTCQ-HWSAQTPHTHNRTP 292
Query: 95 LRY--QGLGEQY 104
+ + L E Y
Sbjct: 293 ENFPCKNLDENY 304
>1mr4_A Nicotiana alata plant defensin 1 (NAD1); cysteine-stabilized
alpha-beta motif, plant defensin fold, plant protein;
NMR {Nicotiana tabacum} SCOP: g.3.7.5 PDB: 4aaz_A 4ab0_A
Length = 47
Score = 27.0 bits (60), Expect = 1.8
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 258 NCAHPCITQPCGSGSCVPLYDGYKCVCTQSC 288
C CI++ G C + +C+CT+ C
Sbjct: 19 PCRKACISEKFTDGHCSKIL--RRCLCTKPC 47
>2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B-
hydrolase fold, acyltransferase, acetyl coenzyme A,
antibiotic biosynthesis; HET: COA; 2.2A {Acremonium
chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A*
Length = 444
Score = 30.1 bits (68), Expect = 1.9
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 38 RSKECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNGSSYLRY 97
+SK ++++ + P G+ I++ + G P SSYLRY
Sbjct: 285 KSKPAMDERFHMAPGVQAGRNISSQDAKK-----EINGTDSGNSHRAGQPIEAVSSYLRY 339
Query: 98 QG 99
Q
Sbjct: 340 QA 341
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 29.7 bits (66), Expect = 2.0
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 42 CLEDKC--NKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNGSS 93
+ C N+ C +C C C +TG+ + + PQ
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGN-GRQCVAEGSPQRVNGK 55
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating,
carbohydrate binding protein; 1.60A {Myxococcus xanthus}
PDB: 4fbv_A*
Length = 267
Score = 29.7 bits (66), Expect = 2.2
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 47 CNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNGSS 93
GGK +T + P+GF ++ Q+ GS+
Sbjct: 102 AVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSA 148
Score = 28.9 bits (64), Expect = 3.6
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 52 CEHGGKCITTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNGSS 93
GGK ++ + P+GF G L Q+ GS+
Sbjct: 174 SNDGGKTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGST 215
>2arp_F Follistatin; cystine knot, disulfide rich, EGF domain, kazal
domain, PROT complex, hormone-growth factor complex;
HET: 1PG; 2.00A {Rattus norvegicus}
Length = 152
Score = 29.1 bits (64), Expect = 2.3
Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 262 PCITQPCGSGS-CVPLYDG-YKCVCTQSCKESHLTEVMCAS 300
C CG G C +CVC C +C
Sbjct: 5 TCENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGL 45
>3b4v_C Follistatin-like 3; ligand-inhibitor signalling complex, cleavage
on PAIR of BAS residues, glycoprotein, growth factor,
hormone, secreted; HET: NAG; 2.48A {Homo sapiens}
Length = 237
Score = 29.5 bits (65), Expect = 2.4
Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 259 CAHPCITQPCGSGS-CVPLYDGYKCVCTQSCKESHLTEVMCAS 300
C C CG G C L +C C C +C S
Sbjct: 69 CKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGS 111
Score = 29.1 bits (64), Expect = 3.1
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 44 EDKCNKTPCEHGGKCITTPGSSYCLCP 70
+D C+ C G C G C C
Sbjct: 70 KDSCDGVECGPGKACRMLGGRPRCECA 96
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Length = 50
Score = 26.7 bits (59), Expect = 2.5
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 36 KGRSKECLEDKCNKTPCEHGGKC--ITTPGSSYCLCPLGFTGDLCQ 79
KG C + K C G +C + + C+C G+ G C+
Sbjct: 2 KGHFSRCPKQ--YKHYCIKG-RCRFVVAEQTPSCVCDEGYIGARCE 44
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 28.8 bits (64), Expect = 3.4
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 41 ECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
C + +++ C G C C G+ G C+
Sbjct: 87 RCRDQSRDRSLCHGKGFLE----CGICRCDTGYIGKNCE 121
Score = 28.0 bits (62), Expect = 5.9
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 32 GNKIKGRSKECLEDKCNKT---PCEHGGKCITTPGSSYCLCPLGFTGDLCQ 79
G I G+ EC C + C G+ + G C C GF G CQ
Sbjct: 165 GKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGK--CRCHPGFEGSACQ 213
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 29.3 bits (64), Expect = 3.6
Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 12/181 (6%)
Query: 26 WIQLNDGNKIKGRS--KECLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGDLCQTRLD 83
WIQ + K + + C G CI S C C LG+T +
Sbjct: 170 WIQESSSQKNVPPFGLDGVYISEPCPSYCSGHGDCI----SGVCFCDLGYTAAQGTCVSN 225
Query: 84 LQVPQFNGSSYLRYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLND 143
+ ++ + + L +NG G + + L+
Sbjct: 226 TPNHSEMFDRFEGKLSPLWYKITGGQVGTGCGTLNDGRSLYFNG---LGKREARTVPLDT 282
Query: 144 RY---VDFTFDLGTGAATLRSSNPISLGEWHKLRLTRTGRHAYLQVDRFPSSQILSPGPF 200
R V F +G+ + + P + E ++ + + + L P
Sbjct: 283 RNIRLVQFYIQIGSKTSGITCIKPRARNEGLVVQYSNDNGILWHLLRELDFMSFLEPQII 342
Query: 201 T 201
+
Sbjct: 343 S 343
>2d56_A Asabf; antibacterial peptide, cystine stabilized alpha-beta motif,
antibiotic; NMR {Ascaris suum}
Length = 53
Score = 26.3 bits (57), Expect = 4.8
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 243 ELNILGEAIQGVNVVNCAHPCITQPCGSGSCVPLYDGYKCVCTQSCK 289
++ L + QG+ C C Q CG+G C CVC + +
Sbjct: 11 DVPGLSKVAQGL----CISSCKFQNCGTGHCEKRGGRPTCVCDRCGR 53
>3bg4_D Guamerin; chymotrypsin, elastase, inhibitor, digestion,
hydrolase, protease, secreted, serine protease,
zymogen, protease inhibitor; 2.50A {Hirudo nipponia}
Length = 57
Score = 26.2 bits (57), Expect = 5.0
Identities = 10/35 (28%), Positives = 12/35 (34%)
Query: 42 CLEDKCNKTPCEHGGKCITTPGSSYCLCPLGFTGD 76
C E C+ +C T CP GF D
Sbjct: 12 CGEKTCSPAQVCLNNECACTAIRCMIFCPNGFKVD 46
>1gps_A Gamma-1-P thionin; plant toxin; NMR {Triticum turgidum} SCOP:
g.3.7.5 PDB: 1gpt_A
Length = 47
Score = 25.8 bits (57), Expect = 5.0
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 258 NCAHPCITQPCGSGSCVPLYDGYKCVCTQSC 288
NCA C + G G+C + +C C + C
Sbjct: 19 NCAQVCQQEGWGGGNCDGPF--RRCKCIRQC 47
>3ast_A Capsid protein; protein-sugar complex, histo-blood group antigen,
capsid Pro lectin-like protein, viral protein; HET: NAG
GAL FUC NPO; 1.40A {Norwalk-like virus} PDB: 3asp_A*
3asq_A* 3asr_A* 3ass_A*
Length = 326
Score = 28.3 bits (63), Expect = 5.8
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 60 TTPGSSYCLCPLGFTGDLCQTRLDLQVPQFNGSSY 94
TTP +S L G + Q L + + +G +
Sbjct: 65 TTPATSGQLF--RVRGKINQGARTLNLTEVDGKPF 97
>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural
protein, NC4, collagen IX, polymorphism, extracellular
matrix; 1.8A {Homo sapiens}
Length = 245
Score = 28.3 bits (62), Expect = 6.2
Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 14/107 (13%)
Query: 137 IALYLNDRYVDFTFDLGTG---AATLRSSNPISLGEWHKLRLTRTGRHAYLQVD-RFPSS 192
I + + V F++ G A + + + +WHK+ + A L VD S
Sbjct: 121 IKINGQTQSVVFSYKGLDGSLQTAAFSNLSSLFDSQWHKIMIGVERSSATLFVDCNRIES 180
Query: 193 QILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVKIKSSFIGCIQKVLI 239
+ P + + LG + D + S +Q +LI
Sbjct: 181 LPIKPRG--PIDIDGFAVLGKLADNP--------QVSVPFELQWMLI 217
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 28.2 bits (62), Expect = 7.5
Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 12/82 (14%)
Query: 5 DNQVILDDWNTVRVFRHRWDA-------WIQLNDGNKIKG-RSKECLEDKCNKTPCEHGG 56
+N + D + + ++ + I + E + + ++GG
Sbjct: 529 ENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGG 588
Query: 57 K---CITTPGSSY-CLCPLGFT 74
C+ + C CP+
Sbjct: 589 CSHICLVKGDGTTRCSCPMHLV 610
>2b6b_D CD209 antigen; cryo EM dengue CRD DC-SIGN, icosahedral virus,
virus-recepto; 25.00A {Homo sapiens} SCOP: d.169.1.1
Length = 175
Score = 27.5 bits (61), Expect = 7.9
Identities = 7/25 (28%), Positives = 7/25 (28%)
Query: 56 GKCITTPGSSYCLCPLGFTGDLCQT 80
G S L P G LC
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMRLCHP 26
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding
site, protein-peptide complex, clathrin adaptor; 2.50A
{Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A
3h85_A 1bxx_A 1hes_A 1h6e_A
Length = 314
Score = 28.0 bits (61), Expect = 8.0
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 461 KFEQLNTDSGLYVGGVEDIEELTRSKYHHSFKGWISNLILSNDYQV 506
FE SGL V ++ E H K W+ + S Y+
Sbjct: 268 NFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIK-WVRYIGRSGIYET 312
>4e1s_A Intimin; outer membrane beta barrel, adhesin; HET: OLC OLB; 1.85A
{Escherichia coli}
Length = 242
Score = 27.9 bits (61), Expect = 8.0
Identities = 25/183 (13%), Positives = 49/183 (26%), Gaps = 3/183 (1%)
Query: 338 EFNIDMRIKTSSSSGLIL--WTGSSQSKDFLALGIHNGYAHVMYNLGNGEVLLENNQTKI 395
E N+ SS L + S + F +G + NLG G+
Sbjct: 7 EVNLQSGNNFDGSSLDFLLPFYDSEKMLAFGQVGARYIDSRFTANLGAGQRFFLPANMLG 66
Query: 396 NNGVWHRLTVHRNFMVVMHGSSHTRSNKSSKIEFKCLSIQRLHRTGKQCLIRIDTDYSMQ 455
N + N + + G KSS + +S K R + ++
Sbjct: 67 YNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVNGYFRMSGWHESYNKKDYDERPANGFDIR 126
Query: 456 SISG-GKFEQLNTDSGLYVGGVEDIEELTRSKYHHSFKGWISNLILSNDYQVKLPLSRSQ 514
+ L +++ K + + + V + +
Sbjct: 127 FNGYLPSYPALGAKLIYEQYYGDNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRH 186
Query: 515 GSS 517
G+
Sbjct: 187 GTG 189
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 28.0 bits (61), Expect = 9.5
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 47 CNKTPCEHGGKCITTPGSSY---CLCPLGFTGDLCQ 79
C + +C G+ C C G+ G C+
Sbjct: 437 CQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE 472
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 27.1 bits (60), Expect = 9.5
Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 47 CNKTPCEHGGKCITTPGSSYCLCPLGFT 74
PC H C G +C CP +
Sbjct: 123 FVDVPCSH--FCNNFIGGYFCSCPPEYF 148
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 27.7 bits (61), Expect = 9.8
Identities = 6/37 (16%), Positives = 10/37 (27%), Gaps = 4/37 (10%)
Query: 42 CLEDKCNKTPCEH----GGKCITTPGSSYCLCPLGFT 74
C + C++ + C CP G
Sbjct: 270 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML 306
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 27.8 bits (62), Expect = 9.8
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 322 LHYKFQLHVDF---RITGYEFNIDMRIKTSSSSGLIL 355
H L+VDF ++G+ + + T + + LIL
Sbjct: 29 THVYLDLNVDFDKKSLSGFA-ELSLDWFTDNKAPLIL 64
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 25.5 bits (56), Expect = 9.9
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 3/24 (12%)
Query: 52 CEHGGKCITTPGSSY-CLCPLGFT 74
CE C + + C C G+
Sbjct: 9 CEQ--FCKNSADNKVVCSCTEGYR 30
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.430
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,157,287
Number of extensions: 487416
Number of successful extensions: 1568
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1356
Number of HSP's successfully gapped: 309
Length of query: 533
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 435
Effective length of database: 3,965,535
Effective search space: 1725007725
Effective search space used: 1725007725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.4 bits)