BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5026
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PVE|A Chain A, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
pdb|3PVE|B Chain B, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
Length = 189
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 78/133 (58%), Gaps = 4/133 (3%)
Query: 160 LGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATL 219
LGE+ + L +VF A P+G+LLYNG + DG GDF++L L++R+++F +DLG GAA +
Sbjct: 32 LGEK----MALEMVFLARGPSGLLLYNGQKTDGKGDFVSLALHNRHLEFRYDLGKGAAII 87
Query: 220 RSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGVPDYNI 279
RS PI+LG W ++ L R GR LQV P SP P T GG PD++
Sbjct: 88 RSKEPIALGTWVRVFLERNGRKGALQVGDGPRVLGESPVPHTMLNLKEPLYVGGAPDFSK 147
Query: 280 VSPKVKIKSSFIG 292
++ + S F G
Sbjct: 148 LARGAAVASGFDG 160
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 22/122 (18%)
Query: 21 GILFLTGERDDLNGDFMTLLIFEGYVEF-------STPYRPYADITVHRTVRTLILPYTV 73
G+L G++ D GDF++L + ++EF + R I + VR +
Sbjct: 49 GLLLYNGQKTDGKGDFVSLALHNRHLEFRYDLGKGAAIIRSKEPIALGTWVRVFLERNGR 108
Query: 74 PSGL---------------FSRITFREPVFVGGRGNTSGLSDKLPTEKGFKGCIRHLDIN 118
L + + +EP++VGG + S L+ GF G I+ + +
Sbjct: 109 KGALQVGDGPRVLGESPVPHTMLNLKEPLYVGGAPDFSKLARGAAVASGFDGAIQLVSLR 168
Query: 119 DH 120
H
Sbjct: 169 GH 170
>pdb|3SH4|A Chain A, Laminin G Like Domain 3 From Human Perlecan
pdb|3SH5|A Chain A, Calcium-Bound Laminin G Like Domain 3 From Human Perlecan
Length = 195
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 180 NGILLYNGHRADGVG---DFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWRKLRLT 236
+G+LL+ G G DFI+L L D ++ F + LG+G A L S +PI+ GEW ++
Sbjct: 44 SGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSGEARLVSEDPINDGEWHRVTAL 103
Query: 237 RTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGVPD 276
R GR +QVD SPGP GG PD
Sbjct: 104 REGRRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPD 143
>pdb|1PZ7|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ7|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 204
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Query: 162 EQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRS 221
E+ L + K G++L++G + D+IAL + D +V +DLG+ LRS
Sbjct: 44 EKALQSNHFELSIKTEATQGLILWSGKGLER-SDYIALAIVDGFVQMMYDLGSKPVVLRS 102
Query: 222 SNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGVPDYNIVS 281
+ PI+ W ++ R R LQV SP TQ GG+ ++
Sbjct: 103 TVPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAH 162
Query: 282 PKVKIKSS-FIG 292
K S+ FIG
Sbjct: 163 KLPKAYSTGFIG 174
>pdb|1PZ8|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|C Chain C, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|D Chain D, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 201
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
Query: 161 GEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLR 220
E+ L + K G++L++G + D+IAL + D +V +DLG+ LR
Sbjct: 40 AEKALQSNHFELSIKTEATQGLILWSGKGLER-SDYIALAIVDGFVQMMYDLGSKPVVLR 98
Query: 221 SSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGVPDYNIV 280
S+ PI+ W ++ R R LQV SP TQ GG+ ++
Sbjct: 99 STVPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVA 158
Query: 281 SPKVKIKSS-FIG 292
K S+ FIG
Sbjct: 159 HKLPKAYSTGFIG 171
>pdb|3BIW|E Chain E, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|F Chain F, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|G Chain G, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|H Chain H, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
Length = 243
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 170 LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNP-I 225
L I F ++ +L+ R D G+GD++ L+++ + F++GT + SN I
Sbjct: 81 LAIGFSTVQKEAVLV----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 136
Query: 226 SLGEWRKLRLTRTGRHAYLQVDRFP 250
+ G++ +R TR+G +A LQVD +P
Sbjct: 137 NDGKYHVVRFTRSGGNATLQVDSWP 161
>pdb|1Q56|A Chain A, Nmr Structure Of The B0 Isoform Of The Agrin G3 Domain In
Its Ca2+ Bound State
Length = 195
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Query: 162 EQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRS 221
E+ L + K G++L++G + D+IAL + D +V +DLG+ LRS
Sbjct: 35 EKALQSNHFELSIKTEATQGLILWSGKGLER-SDYIALAIVDGFVQMMYDLGSKPVVLRS 93
Query: 222 SNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGVPDYNIVS 281
+ PI+ W ++ R R LQV SP TQ GG+ ++
Sbjct: 94 TVPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAH 153
Query: 282 PKVKIKSS-FIG 292
K S+ FIG
Sbjct: 154 KLPKAYSTGFIG 165
>pdb|2R1D|A Chain A, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|B Chain B, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|C Chain C, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|D Chain D, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|E Chain E, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|F Chain F, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|G Chain G, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|H Chain H, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|I Chain I, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|W Chain W, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
Length = 226
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 170 LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNP-I 225
L I F ++ +L+ R D G+GD++ L+++ + F++GT + SN I
Sbjct: 67 LAIGFSTVQKEAVLV----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 122
Query: 226 SLGEWRKLRLTRTGRHAYLQVDRFP 250
+ G++ +R TR+G +A LQVD +P
Sbjct: 123 NDGKYHVVRFTRSGGNATLQVDSWP 147
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/310 (20%), Positives = 126/310 (40%), Gaps = 81/310 (26%)
Query: 13 QFKPESWDG-ILFLTGERDDLNGDFMTLLIFEGYVEF------------STPYRPYADIT 59
QFK S DG IL+ +G+ +D F+ + + +GY+ + + +P D
Sbjct: 33 QFKTTSLDGLILYNSGDGND----FIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQ 88
Query: 60 VHRTV----RTLILPYTVPSGLFSRIT-------FREPVFVGGRGNTS--GLSDKLPTEK 106
H + + + + + + ++IT + +++GG + L + ++
Sbjct: 89 WHNVMISRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKE 148
Query: 107 GFKGCIRHLDINDHLYNFNVSPGGDSLKGIDVALLRPATHYQVSSIPDQ----------- 155
GF+GC+ +D+N L + +S I+ P+T Q S +Q
Sbjct: 149 GFQGCLASVDLNGRLPDL-ISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFS 207
Query: 156 -----------VYQGLGEQYL-------------------SLLD-LTIVFKAIEPNGILL 184
+ G Y+ + D L I F ++ +L+
Sbjct: 208 CDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLV 267
Query: 185 YNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNP-ISLGEWRKLRLTRTGR 240
R D G+GD++ L+++ + F++GT + SN I+ G++ +R TR+G
Sbjct: 268 ----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGG 323
Query: 241 HAYLQVDRFP 250
+A LQVD +P
Sbjct: 324 NATLQVDSWP 333
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 163 QYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLR-- 220
Q + + L FK +G++LYN DG DFI + L Y+ + FDLG GA ++
Sbjct: 23 QAYTSMHLFFQFKTTSLDGLILYN--SGDG-NDFIVVELVKGYLHYVFDLGNGANLIKGS 79
Query: 221 SSNPISLGEWRKLRLTR-TGRHAYLQVDRFPSSQILS 256
S+ P++ +W + ++R T +++D ++QI +
Sbjct: 80 SNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITA 116
>pdb|3VKF|C Chain C, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|D Chain D, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 181
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 170 LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNP-I 225
L I F ++ +L+ R D G+GD++ L+++ + F++GT + SN I
Sbjct: 32 LAIGFSTVQKEAVLV----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 87
Query: 226 SLGEWRKLRLTRTGRHAYLQVDRFP 250
+ G++ +R TR+G +A LQVD +P
Sbjct: 88 NDGKYHVVRFTRSGGNATLQVDSWP 112
>pdb|3MW4|A Chain A, Crystal Structure Of Beta-Neurexin 3 Without The Splice
Insert 4
pdb|3MW4|B Chain B, Crystal Structure Of Beta-Neurexin 3 Without The Splice
Insert 4
pdb|3MW4|C Chain C, Crystal Structure Of Beta-Neurexin 3 Without The Splice
Insert 4
Length = 178
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 170 LTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSS-NPISLG 228
L + F +GIL+ A G+GDF+ L++ + F++GT +++ P++ G
Sbjct: 33 LAVGFSTTVKDGILVRI-DSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDG 91
Query: 229 EWRKLRLTRTGRHAYLQVDRFPSSQ 253
++ +R TR G +A LQVD +P ++
Sbjct: 92 KYHVVRFTRNGANATLQVDNWPVNE 116
>pdb|1C4R|A Chain A, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|B Chain B, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|C Chain C, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|D Chain D, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|E Chain E, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|F Chain F, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|G Chain G, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|H Chain H, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
Length = 182
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 170 LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNP-I 225
L I F ++ +L+ R D G+GD++ L+++ + F++GT + SN I
Sbjct: 33 LAIGFSTVQKEAVLV----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 88
Query: 226 SLGEWRKLRLTRTGRHAYLQVDRFP 250
+ G++ +R TR+G +A LQVD +P
Sbjct: 89 NDGKYHVVRFTRSGGNATLQVDSWP 113
>pdb|3MW3|A Chain A, Crystal Structure Of Beta-Neurexin 2 With The Splice
Insert 4
Length = 208
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 190 ADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPI-SLGEWRKLRLTRTGRHAYLQVDR 248
A G+GD++ L+++ V F++GT T+ N I S G++ +R TR+G +A LQVD
Sbjct: 52 ASGLGDYLQLHIDQGTVGVIFNVGTDDITIDEPNAIVSDGKYHVVRFTRSGGNATLQVDS 111
Query: 249 FPSSQILSPGPF 260
+P ++ G F
Sbjct: 112 WPVNERYPAGNF 123
>pdb|3B3Q|E Chain E, Crystal Structure Of A Synaptic Adhesion Complex
pdb|3B3Q|F Chain F, Crystal Structure Of A Synaptic Adhesion Complex
Length = 197
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 170 LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNP-I 225
L I F ++ +L+ R D G+GD++ L+++ + F++GT + SN I
Sbjct: 41 LAIGFSTVQKEAVLV----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 96
Query: 226 SLGEWRKLRLTRTGRHAYLQVDRFP 250
+ G++ +R TR+G +A LQVD +P
Sbjct: 97 NDGKYHVVRFTRSGGNATLQVDSWP 121
>pdb|2WQZ|C Chain C, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2WQZ|D Chain D, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2XB6|C Chain C, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
pdb|2XB6|D Chain D, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
Length = 179
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 170 LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNP-I 225
L I F ++ +L+ R D G+GD++ L+++ + F++GT + SN I
Sbjct: 34 LAIGFSTVQKEAVLV----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 89
Query: 226 SLGEWRKLRLTRTGRHAYLQVDRFP 250
+ G++ +R TR+G +A LQVD +P
Sbjct: 90 NDGKYHVVRFTRSGGNATLQVDSWP 114
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 170 LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNP-I 225
L I F ++ +L+ R D G+GD++ L+++ + F++GT + SN I
Sbjct: 869 LAIGFSTVQKEAVLV----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 924
Query: 226 SLGEWRKLRLTRTGRHAYLQVDRFP 250
+ G++ +R TR+G +A LQVD +P
Sbjct: 925 NDGKYHVVRFTRSGGNATLQVDSWP 949
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 163 QYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLR-- 220
Q + + L FK +G++LYN DG DFI + L Y+ + FDLG GA ++
Sbjct: 639 QAYTSMHLFFQFKTTSLDGLILYNS--GDG-NDFIVVELVKGYLHYVFDLGNGANLIKGS 695
Query: 221 SSNPISLGEWRKLRLTR-TGRHAYLQVDRFPSSQILS 256
S+ P++ +W + ++R T +++D ++QI +
Sbjct: 696 SNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITA 732
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 123/317 (38%), Gaps = 66/317 (20%)
Query: 12 IQFKPESWDGILFLTGERDD-----LNGDFMTLLIFEGYVEFSTPYRP---------YAD 57
+ FK +G++ TG+ D L ++L+I G F P + D
Sbjct: 35 LSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHD 94
Query: 58 ITVHRTVRTLILPYTVPSGLFSRITFREP----------VFVGGRGNTSGLSDKLPTEKG 107
+ V R +R + + G+ + + + +VGG +T+ L P
Sbjct: 95 VKVTRNLRQVTISV---DGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGS-PVSNN 150
Query: 108 FKGCIRHLDINDHLYNFNVS---PGGD---------SLKGIDVALLRPATHY---QVSSI 152
F GC++ + ++ +S GD + K +VA L P T S+
Sbjct: 151 FMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISL 210
Query: 153 PDQVYQGLGEQYLSLLDLTIVFKAIEPNGILLYNG----HRADGVG------DFIALYLN 202
P + G ++ F+ EPNG++L++ H+ D DF A+ +
Sbjct: 211 PKWNAKKTGS-------ISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEML 263
Query: 203 DRYVDFTFDLGTGAATLRS-SNPISLGEWRKLRLTRTGRHAYLQVD--RFPSSQILSPGP 259
D ++ D+G+G +++ ++ GEW + R GR + V+ R P + +PG
Sbjct: 264 DGHLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTPYT---APGE 320
Query: 260 FTQXXXXXXXXXGGVPD 276
GG+P+
Sbjct: 321 SEILDLDDELYLGGLPE 337
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 169 DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGA--ATLRSSN-PI 225
++T+ FK ++ NG++L+ G A D++ L L + V +LG+GA A + N
Sbjct: 32 EITLSFKTLQRNGLMLHTGKSA----DYVNLALKNGAVSLVINLGSGAFEALVEPVNGKF 87
Query: 226 SLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGVPDYNIVSPKVK 285
+ W +++TR R + VD ++ + +T GG P + P
Sbjct: 88 NDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADL-PGSP 146
Query: 286 IKSSFIG 292
+ ++F+G
Sbjct: 147 VSNNFMG 153
>pdb|3BOD|A Chain A, Structure Of Mouse Beta-Neurexin 1
Length = 178
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 170 LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNP-I 225
L I F ++ +L+ R D G+GD++ L+++ + F++GT + SN I
Sbjct: 33 LAIGFSTVQKEAVLV----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 88
Query: 226 SLGEWRKLRLTRTGRHAYLQVDRFP 250
+ G++ +R TR+G +A LQVD +P
Sbjct: 89 NDGKYHVVRFTRSGGNATLQVDSWP 113
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
Length = 1245
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 170 LTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNP-ISLG 228
L I F ++ +L+ + G+GD++ L+++ + F++GT + SN I+ G
Sbjct: 1085 LAIGFSTVQKEAVLV-RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDG 1143
Query: 229 EWRKLRLTRTGRHAYLQVDRFP 250
++ +R TR+G +A LQVD +P
Sbjct: 1144 KYHVVRFTRSGGNATLQVDSWP 1165
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 112/286 (39%), Gaps = 61/286 (21%)
Query: 12 IQFKPESWDGILFLTGERDD-----LNGDFMTLLIFEGYVEFSTPYRP---------YAD 57
+ FK +G++ TG+ D L ++L+I G F P + D
Sbjct: 260 LSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHD 319
Query: 58 ITVHRTVRTLILPYTVPSGLFSRITFREP----------VFVGGRGNTSGLSDKLPTEKG 107
+ V R +R + + G+ + + + +VGG +T+ L P
Sbjct: 320 VKVTRNLRQVTISV---DGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGS-PVSNN 375
Query: 108 FKGCIRHLDINDHLYNFNVS---PGGD---------SLKGIDVALLRPATHYQVSS---I 152
F GC++ + ++ +S GD + K +VA L P T S +
Sbjct: 376 FMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISL 435
Query: 153 PDQVYQGLGEQYLSLLDLTIVFKAIEPNGILLYNG----HRADGVG------DFIALYLN 202
P + G ++ F+ EPNG++L++ H+ D DF A+ +
Sbjct: 436 PKWNAKKTGS-------ISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEML 488
Query: 203 DRYVDFTFDLGTGAATLRS-SNPISLGEWRKLRLTRTGRHAYLQVD 247
D ++ D+G+G +++ ++ GEW + R GR + V+
Sbjct: 489 DGHLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTISVN 534
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 163 QYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLR-- 220
Q + + L FK +G++LYN DG DFI + L Y+ + FDLG GA ++
Sbjct: 855 QAYTSMHLFFQFKTTSLDGLILYNS--GDG-NDFIVVELVKGYLHYVFDLGNGANLIKGS 911
Query: 221 SSNPISLGEWRKLRLTR-TGRHAYLQVDRFPSSQILS 256
S+ P++ +W + ++R T +++D ++QI +
Sbjct: 912 SNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITA 948
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 169 DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGA--ATLRSSN-PI 225
++T+ FK ++ NG++L+ G A D++ L L + V +LG+GA A + N
Sbjct: 257 EITLSFKTLQRNGLMLHTGKSA----DYVNLALKNGAVSLVINLGSGAFEALVEPVNGKF 312
Query: 226 SLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGVPDYNIVSPKVK 285
+ W +++TR R + VD ++ + +T GG P + P
Sbjct: 313 NDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADL-PGSP 371
Query: 286 IKSSFIG 292
+ ++F+G
Sbjct: 372 VSNNFMG 378
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 169 DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLG 228
D+++ F++ GIL+ R D + L L+ V T +LG G TL + ++
Sbjct: 683 DVSLRFRSQRAYGILMATTSRDSA--DTLRLELDAGRVKLTVNLGKGPETLFAGYNLNDN 740
Query: 229 EWRKLRLTRTGRHAYLQVD 247
EW +R+ R G+ L VD
Sbjct: 741 EWHTVRVVRRGKSLKLTVD 759
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 169 DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLN-DRYVDFTFDLGTGA-ATLRSSNPIS 226
+++ K G++LY +G DF+ L L + +F + ATL + P++
Sbjct: 23 EMSFQLKTRSARGLVLY--FDDEGFCDFLELILTRGGRLQLSFSIFCAEPATLLTDTPVN 80
Query: 227 LGEWRKLRLTRTGRHAYLQVDRFPSSQI 254
G W +R+ R R+ L +D+ + +
Sbjct: 81 DGAWHNVRIRRQFRNTTLFIDQVEAKWV 108
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 170 LTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNP-ISLG 228
L I F ++ +L+ + G+GD++ L+++ + F++GT + SN I+ G
Sbjct: 1094 LAIGFSTVQKEAVLV-RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDG 1152
Query: 229 EWRKLRLTRTGRHAYLQVDRFP 250
++ +R TR+G +A LQVD +P
Sbjct: 1153 KYHVVRFTRSGGNATLQVDSWP 1174
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 163 QYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLR-- 220
Q + + L FK +G++LYN DG DFI + L Y+ + FDLG GA ++
Sbjct: 864 QAYTSMHLFFQFKTTSLDGLILYNS--GDG-NDFIVVELVKGYLHYVFDLGNGANLIKGS 920
Query: 221 SSNPISLGEWRKLRLTR-TGRHAYLQVDRFPSSQILS 256
S+ P++ +W + ++R T +++D ++QI +
Sbjct: 921 SNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITA 957
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 112/286 (39%), Gaps = 61/286 (21%)
Query: 12 IQFKPESWDGILFLTGERDD-----LNGDFMTLLIFEGYVEFSTPYRP---------YAD 57
+ FK +G++ TG+ D L ++L+I G F P + D
Sbjct: 260 LSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHD 319
Query: 58 ITVHRTVRTLILPYTVPSGLFSRITFREP----------VFVGGRGNTSGLSDKLPTEKG 107
+ V R +R + + G+ + + + +VGG +T+ L P
Sbjct: 320 VKVTRNLRQVTISV---DGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGS-PVSNN 375
Query: 108 FKGCIRHLDINDHLYNFNVS---PGGD---------SLKGIDVALLRPATHYQVSS---I 152
F GC++ + ++ +S GD + K +VA L P T S +
Sbjct: 376 FMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISL 435
Query: 153 PDQVYQGLGEQYLSLLDLTIVFKAIEPNGILLYNG----HRADGVG------DFIALYLN 202
P + G ++ F+ EPNG++L++ H+ D DF A+ +
Sbjct: 436 PKWNAKKTGS-------ISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEML 488
Query: 203 DRYVDFTFDLGTGAATLRS-SNPISLGEWRKLRLTRTGRHAYLQVD 247
D ++ D+G+G +++ ++ GEW + R GR + V+
Sbjct: 489 DGHLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTISVN 534
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 169 DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGA--ATLRSSN-PI 225
++T+ FK ++ NG++L+ G A D++ L L + V +LG+GA A + N
Sbjct: 257 EITLSFKTLQRNGLMLHTGKSA----DYVNLALKNGAVSLVINLGSGAFEALVEPVNGKF 312
Query: 226 SLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGVPDYNIVSPKVK 285
+ W +++TR R + VD ++ + +T GG P + P
Sbjct: 313 NDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADL-PGSP 371
Query: 286 IKSSFIG 292
+ ++F+G
Sbjct: 372 VSNNFMG 378
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 169 DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLN-DRYVDFTFDLGTGA-ATLRSSNPIS 226
+++ K G++LY +G DF+ L L + +F + ATL + P++
Sbjct: 23 EMSFQLKTRSARGLVLY--FDDEGFCDFLELILTRGGRLQLSFSIFCAEPATLLTDTPVN 80
Query: 227 LGEWRKLRLTRTGRHAYLQVDRFPSSQI 254
G W +R+ R R+ L +D+ + +
Sbjct: 81 DGAWHNVRIRRQFRNTTLFIDQVEAKWV 108
>pdb|2R1B|A Chain A, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
pdb|2R1B|B Chain B, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
Length = 220
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 170 LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNP-I 225
L I F ++ +L+ R D G+GD++ L+++ + F++GT + SN I
Sbjct: 39 LAIGFSTVQKEAVLV----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 94
Query: 226 SLGEWRKLRLTRTGRHAYLQVDRFP 250
+ G++ +R TR+G +A LQVD +P
Sbjct: 95 NDGKYHVVRFTRSGGNATLQVDSWP 119
>pdb|3MW2|A Chain A, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
pdb|3MW2|B Chain B, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
Length = 207
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 170 LTIVFKAIEPNGILLYNGHRAD---GVGDFIALYLNDRYVDFTFDLGTGAATLRSSNP-I 225
L I F ++ +L+ R D G+GD++ L+++ + F++GT + SN I
Sbjct: 32 LAIGFSTVQKEAVLV----RVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII 87
Query: 226 SLGEWRKLRLTRTGRHAYLQVDRFP 250
+ G++ +R TR+G +A LQVD +P
Sbjct: 88 NDGKYHVVRFTRSGGNATLQVDSWP 112
>pdb|3BOP|A Chain A, Structure Of Mouse Beta-neurexin 2d4
pdb|3BOP|B Chain B, Structure Of Mouse Beta-neurexin 2d4
pdb|3BOP|C Chain C, Structure Of Mouse Beta-neurexin 2d4
Length = 175
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 190 ADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPI-SLGEWRKLRLTRTGRHAYLQVDR 248
A G+GD++ L+++ V F++GT T+ N I S G++ +R TR+G +A LQVD
Sbjct: 49 ASGLGDYLQLHIDQGTVGVIFNVGTDDITIDEPNAIVSDGKYHVVRFTRSGGNATLQVDS 108
Query: 249 FPSSQ 253
+P ++
Sbjct: 109 WPVNE 113
>pdb|2WJS|A Chain A, Crystal Structure Of The Lg1-3 Region Of The Laminin
Alpha2 Chain
Length = 608
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 164 YLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSN 223
Y ++ + F+ + +L+Y R + DF+++ L+D +V ++DLG+G ++ S+
Sbjct: 223 YPNISTVMFKFRTFSSSALLMYLATR--DLKDFMSVELSDGHVKVSYDLGSGMTSVVSNQ 280
Query: 224 PISLGEWRKLRLTRTGRHAYLQVDRFPSSQ 253
+ G+W+ L+R + A + + S+Q
Sbjct: 281 NHNDGKWKAFTLSRIQKQANISIVDIDSNQ 310
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 195 DFIALYLNDRYVDFTFDLGTGAATLRSSN-PISLGEWRKLRLTRTGRHAYLQV 246
DF+A+ + V F +D+G+G + + I W ++ +RTGR+ + V
Sbjct: 58 DFLAIEMRKGKVSFLWDVGSGVGRVEYPDLTIDDSYWYRIEASRTGRNGSISV 110
>pdb|3V64|A Chain A, Crystal Structure Of Agrin And Lrp4
pdb|3V64|B Chain B, Crystal Structure Of Agrin And Lrp4
pdb|3V65|A Chain A, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|C Chain C, Crystal Structure Of Agrin And Lrp4 Complex
Length = 191
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 161 GEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLR 220
E+ L + + G++L+ G A+ D++AL + D ++ ++DLG+ LR
Sbjct: 30 AEKALQSNHFELSLRTEATQGLVLWIGKAAER-ADYMALAIVDGHLQLSYDLGSQPVVLR 88
Query: 221 SSNPISLGEWRKLRLTRTGRHAYLQV 246
S+ ++ W ++R R R LQV
Sbjct: 89 STVKVNTNRWLRIRAHREHREGSLQV 114
>pdb|2JD4|A Chain A, Mouse Laminin Alpha1 Chain, Domains Lg4-5
pdb|2JD4|B Chain B, Mouse Laminin Alpha1 Chain, Domains Lg4-5
Length = 383
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 168 LDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISL 227
L + + + +G++ Y H+ D+ L L + + F FDLG G + +S
Sbjct: 45 LQVQLSIRTFASSGLIYYVAHQNQM--DYATLQLQEGRLHFMFDLGKGRTKVSHPALLSD 102
Query: 228 GEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQXXXXXXXXXGGVPDY 277
G+W ++ R A++ VD S + G T GG+P +
Sbjct: 103 GKWHTVKTEYIKRKAFMTVDGQESPSVTVVGKATTLDVERKLYLGGLPSH 152
>pdb|1DYK|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair
Length = 394
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 194 GDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQ 253
DF + L + + F++DLG+G + I+ G+W K+++ R + L VD SSQ
Sbjct: 83 ADFATVQLRNGFPYFSYDLGSGDTSTMIPTKINDGQWHKIKIVRVKQEGILYVDD-ASSQ 141
Query: 254 ILSP 257
+SP
Sbjct: 142 TISP 145
>pdb|2H0B|A Chain A, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|B Chain B, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|C Chain C, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|D Chain D, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
Length = 184
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 169 DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGA--ATLRSSN-PI 225
++T+ FK ++ NG+ L+ G A D++ L L + V +LG+GA A + N
Sbjct: 31 EITLSFKTLQRNGLXLHTGKSA----DYVNLALKNGAVSLVINLGSGAFEALVEPVNGKF 86
Query: 226 SLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQ 262
+ W +++TR R + VD IL+ +TQ
Sbjct: 87 NDNAWHDVKVTRNLRQVTISVD-----GILTTTGYTQ 118
>pdb|1OKQ|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair, Ca1 Site Mutant
Length = 394
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 196 FIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQIL 255
F + L + + F++DLG+G + I+ G+W K+++ R + L VD SSQ +
Sbjct: 85 FATVQLRNGFPYFSYDLGSGDTSTMIPTKINDGQWHKIKIVRVKQEGILYVDD-ASSQTI 143
Query: 256 SP 257
SP
Sbjct: 144 SP 145
>pdb|2R16|A Chain A, Crystal Structure Of Bovine Neurexin 1 Alpha LnsLG DOMAIN
4 (With No Splice Insert)
Length = 182
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 169 DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLG 228
D+++ F++ GIL+ R D + L L+ V T +LG G TL + ++
Sbjct: 30 DVSLRFRSQRAYGILMATTSRDSA--DTLRLELDAGRVKLTVNLGKGPETLFAGYNLNDN 87
Query: 229 EWRKLRLTRTGRHAYLQVD 247
EW +R+ R G+ L VD
Sbjct: 88 EWHTVRVVRRGKSLKLTVD 106
>pdb|1H30|A Chain A, C-Terminal Lg Domain Pair Of Human Gas6
pdb|2C5D|A Chain A, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|B Chain B, Structure Of A Minimal Gas6-Axl Complex
Length = 422
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 174 FKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNP-ISLGEWRK 232
F+ +P GILL+ G D +AL + ++ G + SS P I+ G W+
Sbjct: 69 FRTFDPEGILLFAGGHQDSTWIVLALRAGRLELQLRYN---GVGRVTSSGPVINHGMWQT 125
Query: 233 LRLTRTGRHAYLQVDRFPSSQILSPGPFTQ 262
+ + R+ ++V+R +I G Q
Sbjct: 126 ISVEELARNLVIKVNRDAVMKIAVAGDLFQ 155
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 189 RADGVGDFIALY--LNDRYVDFTFDLGTGAATLRSSNPISLGEWRKLRLTRTGRHAYL 244
R GV F+ALY DR+ D +F G L +S P G+W + R TG Y+
Sbjct: 2 RGSGVTLFVALYDYQADRWTDLSFHKGEKFQILDASPP---GDWWEARSLTTGETGYI 56
>pdb|3LKK|A Chain A, Crystal Structure Of The Isopentenyl Phosphate Kinase
Substr Complex
pdb|3LKK|B Chain B, Crystal Structure Of The Isopentenyl Phosphate Kinase
Substr Complex
Length = 249
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 137 DVALLRPA-THYQVSSIPDQVYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGD 195
D LLR T+ + + V G+G+++ S++ + K+ NG+ L NG+ + +GD
Sbjct: 182 DAVLLRDIDTNITFDRVQNDVTGGIGKKFESMVKM----KSSVKNGVYLINGNHPERIGD 237
Query: 196 F 196
Sbjct: 238 I 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.143 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,769,066
Number of Sequences: 62578
Number of extensions: 438492
Number of successful extensions: 744
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 54
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)