RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5026
(293 letters)
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
protein; 1.9A {Mus musculus}
Length = 383
Score = 148 bits (375), Expect = 2e-42
Identities = 50/307 (16%), Positives = 99/307 (32%), Gaps = 35/307 (11%)
Query: 12 IQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS----------TPYRPYAD---- 57
+ + + G+++ ++ D+ TL + EG + F + +D
Sbjct: 49 LSIRTFASSGLIYYVAHQNQ--MDYATLQLQEGRLHFMFDLGKGRTKVSHPALLSDGKWH 106
Query: 58 -ITVHRTVRTLIL-------PYTVPSGLFSRITFREPVFVGGRGNTSGLSDKLPTEKGFK 109
+ R + P G + + +++GG + +
Sbjct: 107 TVKTEYIKRKAFMTVDGQESPSVTVVGKATTLDVERKLYLGGLPSHYRARNIGTITHSIP 166
Query: 110 GCIRHLDINDHLYNFNVSPGGDSLKGIDVALLRPATHYQVSSIPDQVYQGLGEQYLSLLD 169
CI + +N + + ++ V G + L
Sbjct: 167 ACIGEIMVNGQQLDKDRPLSASAVDRCYVVAQEGTFFEGSGYA---ALVKEGYKVRLDLQ 223
Query: 170 LTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAAT----LRSSNPI 225
+T+ F+ NG+LL D I L + D V F + G G T R++ +
Sbjct: 224 ITLEFRTTSKNGVLLGIS---SAKVDAIGLEIVDGKVLFHVNNGAGRITATYQPRAARAL 280
Query: 226 SLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVK 285
G+W L+ ++ L VD T + +Y+GG P +I +
Sbjct: 281 CDGKWHTLQAHKSKHRIVLTVDGNSVRAESPHTHSTSADTNDPIYVGGYPA-HIKQNSLS 339
Query: 286 IKSSFIG 292
++SF G
Sbjct: 340 SRASFRG 346
Score = 117 bits (295), Expect = 8e-31
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 2/125 (1%)
Query: 168 LDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISL 227
L + + + +G++ Y H+ D+ L L + + F FDLG G + +S
Sbjct: 45 LQVQLSIRTFASSGLIYYVAHQ--NQMDYATLQLQEGRLHFMFDLGKGRTKVSHPALLSD 102
Query: 228 GEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVKIK 287
G+W ++ R A++ VD S + G T L + LYLGG+P + I
Sbjct: 103 GKWHTVKTEYIKRKAFMTVDGQESPSVTVVGKATTLDVERKLYLGGLPSHYRARNIGTIT 162
Query: 288 SSFIG 292
S
Sbjct: 163 HSIPA 167
Score = 58.4 bits (141), Expect = 5e-10
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 30/138 (21%)
Query: 8 WRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS--------------TPYR 53
+ ++F+ S +G+L D + L I +G V F R
Sbjct: 222 LQITLEFRTTSKNGVLLGISSAK---VDAIGLEIVDGKVLFHVNNGAGRITATYQPRAAR 278
Query: 54 PYAD-----ITVHRTVRTLIL-------PYTVPSGLFSRITFREPVFVGGRGNTSGLSDK 101
D + H++ ++L P + +P++VGG +
Sbjct: 279 ALCDGKWHTLQAHKSKHRIVLTVDGNSVRAESPHTHSTSADTNDPIYVGGYPAHIKQN-S 337
Query: 102 LPTEKGFKGCIRHLDIND 119
L + F+GC+R+L ++
Sbjct: 338 LSSRASFRGCVRNLRLSR 355
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus}
SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Length = 394
Score = 142 bits (358), Expect = 8e-40
Identities = 51/306 (16%), Positives = 91/306 (29%), Gaps = 35/306 (11%)
Query: 12 IQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS----------TPYRPYAD---- 57
++ + E+ G+LF + + DF T+ + G+ FS D
Sbjct: 63 LEVRTEAESGLLFYMARIN--HADFATVQLRNGFPYFSYDLGSGDTSTMIPTKINDGQWH 120
Query: 58 -ITVHRTVRTLIL------PYTVPSGLFSRITFREPVFVGGRGNTSGLSDKLPTEKGFKG 110
I + R + IL T+ + ++VGG P G
Sbjct: 121 KIKIVRVKQEGILYVDDASSQTISPKKADILDVVGILYVGGLPINYTTRRIGPVTYSLDG 180
Query: 111 CIRHLDINDHLYNFNVSPGGDSLKGIDVALLRPATHYQVSSIPDQVYQGLGEQYLSLLDL 170
C+R+L + + + + +G L +
Sbjct: 181 CVRNLHMEQAPVDLDQPTSSFHVGTCFANAESGTYFDGTGFAKAVGGFKVGLD----LLV 236
Query: 171 TIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISL--- 227
F+ P G+LL + D + + + D + F D G G T I
Sbjct: 237 EFEFRTTRPTGVLLGVSSQK---MDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPGHMC 293
Query: 228 -GEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVKI 286
G+W K+ + L VD T + +++GG P + +
Sbjct: 294 NGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPG-GLNQFGLTT 352
Query: 287 KSSFIG 292
F G
Sbjct: 353 NIRFRG 358
Score = 109 bits (274), Expect = 8e-28
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 3/136 (2%)
Query: 157 YQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGA 216
+ + L + + + +G+L Y DF + L + + F++DLG+G
Sbjct: 48 IAFDDTKVKNRLTIELEVRTEAESGLLFYMARI--NHADFATVQLRNGFPYFSYDLGSGD 105
Query: 217 ATLRSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPD 276
+ I+ G+W K+++ R + L VD S I SP L + LY+GG+P
Sbjct: 106 TSTMIPTKINDGQWHKIKIVRVKQEGILYVDDASSQTI-SPKKADILDVVGILYVGGLPI 164
Query: 277 YNIVSPKVKIKSSFIG 292
+ S G
Sbjct: 165 NYTTRRIGPVTYSLDG 180
Score = 59.3 bits (143), Expect = 3e-10
Identities = 26/157 (16%), Positives = 44/157 (28%), Gaps = 30/157 (19%)
Query: 8 WRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS--------------TPYR 53
+F+ G+L + D M + + + + F
Sbjct: 234 LLVEFEFRTTRPTGVLLGVSSQ---KMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPG 290
Query: 54 PYAD-----ITVHRTVRTLIL-------PYTVPSGLFSRITFREPVFVGGRGNTSGLSDK 101
+ +T + L L P+ + +PVFVGG
Sbjct: 291 HMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPGGL-NQFG 349
Query: 102 LPTEKGFKGCIRHLDINDHLYNFNVSPGGDSLKGIDV 138
L T F+GCIR L + +L+ V
Sbjct: 350 LTTNIRFRGCIRSLKLTKGTGKPLEVNFAKALELRGV 386
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 142 bits (360), Expect = 7e-39
Identities = 61/328 (18%), Positives = 112/328 (34%), Gaps = 56/328 (17%)
Query: 12 IQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS-----------TPYRPYAD--- 57
+ K D +LF G DF+ + + +G V F P D
Sbjct: 37 VHVKTAVADNLLFYLGSAK--FIDFLAIEMRKGKVSFLWDVGSGVGRVEYPDLTIDDSYW 94
Query: 58 --ITVHRTVRTLIL------------------PYTVPSGLFSRITFREPVFVGGRGNTSG 97
I RT R + + P + +FVGG
Sbjct: 95 YRIEASRTGRNGSISVRALDGPKASMVPSTYHSVSPPGYTILDVDANAMLFVGGLTGKIK 154
Query: 98 LSDKLPTEKGFKGCIRHLDIND---HLYNFNVSPG---GDSLKGIDVALLRPATHYQVSS 151
+D F GC+ ++ L+NF G G ++
Sbjct: 155 KAD-AVRVITFTGCMGETYFDNKPIGLWNFREKEGDCKGCTVSPQVEDSEGTIQFDGEGY 213
Query: 152 IPDQVYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFD 211
+ Y ++ + F+ + +L+Y R + DF+++ L+D +V ++D
Sbjct: 214 A---LVSRPIRWYPNISTVMFKFRTFSSSALLMYLATR--DLKDFMSVELSDGHVKVSYD 268
Query: 212 LGTGAATLRSSNPISLGEWRKLRLTRTGRHAYLQVD-----RFPSSQILSPGPFTQLSLS 266
LG+G ++ S+ + G+W+ L+R + A + + + + S G L L
Sbjct: 269 LGSGMTSVVSNQNHNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGNNFGLDLK 328
Query: 267 L--SLYLGGVPDYNIVSPKVKIKSSFIG 292
+Y GG+P + P+V + G
Sbjct: 329 ADDKIYFGGLPTLRNLRPEV-NVKKYSG 355
Score = 116 bits (291), Expect = 2e-29
Identities = 57/323 (17%), Positives = 108/323 (33%), Gaps = 48/323 (14%)
Query: 4 SPQAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS----------TPYR 53
P +F+ S +L RD DFM++ + +G+V+ S +
Sbjct: 223 YPNISTVMFKFRTFSSSALLMYLATRD--LKDFMSVELSDGHVKVSYDLGSGMTSVVSNQ 280
Query: 54 PYAD-----ITVHRTVRTLIL------------PYTVPSGLFSRITFR--EPVFVGGRGN 94
+ D T+ R + + T SG + + + ++ GG
Sbjct: 281 NHNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGNNFGLDLKADDKIYFGGLPT 340
Query: 95 TSGLSDKLPTEKGFKGCIRHLDINDHLYNFNVSPG-GDSLKGIDVALLRPATHYQVSSIP 153
L ++ K + GC++ ++I+ YN SP KG + + + + +
Sbjct: 341 LRNLRPEVNV-KKYSGCLKDIEISRTPYNILSSPDYVGVTKGCSLENVYTVSFPKPGFVE 399
Query: 154 DQVYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLG 213
++L F +GI+L + G + A++LN ++ G
Sbjct: 400 LAAVSIDVGTEINL-----SFSTRNESGIILLG---SGGGQAYYAIFLNKGRLEVHLSSG 451
Query: 214 TGAA----TLRSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSL 269
T N G + + RT +Q+D Q L
Sbjct: 452 TRTMRKIVIKPEPNRFHDGREHSVHVERTRGIFTVQIDEDRRHMQNLTEE--QPIEVKKL 509
Query: 270 YLGGVPDYNIVSPKVKIKSSFIG 292
++GG P SP ++ +F G
Sbjct: 510 FVGGAPPEFQPSP-LRNIPAFQG 531
Score = 98.6 bits (245), Expect = 3e-23
Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 168 LDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSN-PIS 226
++ + K + +L Y G DF+A+ + V F +D+G+G + + I
Sbjct: 33 NNIVVHVKTAVADNLLFYLGSA--KFIDFLAIEMRKGKVSFLWDVGSGVGRVEYPDLTID 90
Query: 227 LGEWRKLRLTRTGRHAYLQVDRFPSSQIL---------SPGPFTQLSLSLS--LYLGGVP 275
W ++ +RTGR+ + V + SP +T L + + L++GG+
Sbjct: 91 DSYWYRIEASRTGRNGSISVRALDGPKASMVPSTYHSVSPPGYTILDVDANAMLFVGGLT 150
Query: 276 DYNIVSPKVKIKSSFIG 292
+ V++ +F G
Sbjct: 151 GKIKKADAVRVI-TFTG 166
Score = 57.0 bits (137), Expect = 2e-09
Identities = 25/157 (15%), Positives = 45/157 (28%), Gaps = 35/157 (22%)
Query: 5 PQAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS--------------T 50
+ F + GI+ L + + + +G +E
Sbjct: 406 DVGTEINLSFSTRNESGIILLGSGGG---QAYYAIFLNKGRLEVHLSSGTRTMRKIVIKP 462
Query: 51 PYRPYAD-----ITVHRTVRTLIL-----PYTVPSGLFSRITFREPVFVGGRGNTSGLSD 100
+ D + V RT + + + + + +FVGG S
Sbjct: 463 EPNRFHDGREHSVHVERTRGIFTVQIDEDRRHMQNLTEEQPIEVKKLFVGGAPPEFQPS- 521
Query: 101 KLPTEKGFKGCIRHLDINDHLYNF-------NVSPGG 130
L F+GC+ +L IN +F N G
Sbjct: 522 PLRNIPAFQGCVWNLVINSIPMDFAQPIAFKNADIGR 558
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2,
protein structure initiative; 1.40A {Mus musculus}
Length = 189
Score = 132 bits (334), Expect = 3e-38
Identities = 56/125 (44%), Positives = 80/125 (64%)
Query: 168 LDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISL 227
+ L +VF A P+G+LLYNG + DG GDF++L L++R+++F +DLG GAA +RS PI+L
Sbjct: 36 MALEMVFLARGPSGLLLYNGQKTDGKGDFVSLALHNRHLEFRYDLGKGAAIIRSKEPIAL 95
Query: 228 GEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVKIK 287
G W ++ L R GR LQV P SP P T L+L LY+GG PD++ ++ +
Sbjct: 96 GTWVRVFLERNGRKGALQVGDGPRVLGESPVPHTMLNLKEPLYVGGAPDFSKLARGAAVA 155
Query: 288 SSFIG 292
S F G
Sbjct: 156 SGFDG 160
Score = 78.4 bits (193), Expect = 8e-18
Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 26/150 (17%)
Query: 12 IQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS----------TPYRPYAD---- 57
+ F G+L G++ D GDF++L + ++EF P A
Sbjct: 40 MVFLARGPSGLLLYNGQKTDGKGDFVSLALHNRHLEFRYDLGKGAAIIRSKEPIALGTWV 99
Query: 58 -ITVHRTVRTLIL-------PYTVPSGLFSRITFREPVFVGGRGNTSGLSDKLPTEKGFK 109
+ + R R L + + +EP++VGG + S L+ GF
Sbjct: 100 RVFLERNGRKGALQVGDGPRVLGESPVPHTMLNLKEPLYVGGAPDFSKLARGAAVASGFD 159
Query: 110 GCIRHLDINDHLYNFNVSPGGDSLKGIDVA 139
G I+ + + H L+ +DVA
Sbjct: 160 GAIQLVSLRGHQLLTQ----EHVLRAVDVA 185
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 128 bits (323), Expect = 1e-34
Identities = 56/335 (16%), Positives = 118/335 (35%), Gaps = 72/335 (21%)
Query: 12 IQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS------------TPYRPYAD-- 57
QFK S DG++ DF+ + + +GY+ + + +P D
Sbjct: 32 FQFKTTSLDGLILYNSGD---GNDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQ 88
Query: 58 ---ITVHRTVRTLIL------PYTVPSGLFSRITFREPVFVGG--RGNTSGLSDKLPTEK 106
+ + R L T + + + +++GG + L + ++
Sbjct: 89 WHNVMISRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKE 148
Query: 107 GFKGCIRHLDINDHLYNF---------NVSPGGDSLKGI-----------------DVAL 140
GF+GC+ +D+N L + + G + +
Sbjct: 149 GFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSC 208
Query: 141 LRPATHY---QVSSIPDQVYQGLGEQYLSLL------------DLTIVFKAIEPNGILLY 185
T + + G ++ L I F ++ +L+
Sbjct: 209 DCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVR 268
Query: 186 NGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSN-PISLGEWRKLRLTRTGRHAYL 244
+ G+GD++ L+++ + F++GT + SN I+ G++ +R TR+G +A L
Sbjct: 269 VD-SSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL 327
Query: 245 QVDRFP-SSQILSPGPFTQLSLSLSLYLGGVPDYN 278
QVD +P + + T + ++ +GG
Sbjct: 328 QVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQ 362
Score = 95.5 bits (237), Expect = 1e-22
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 168 LDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLR--SSNPI 225
+ L FK +G++LYN DFI + L Y+ + FDLG GA ++ S+ P+
Sbjct: 28 MHLFFQFKTTSLDGLILYNS---GDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPL 84
Query: 226 SLGEWRKLRLTRTGRHAY-LQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPD--YNIVSP 282
+ +W + ++R + + +++D ++QI L L LY+GGV Y +
Sbjct: 85 NDNQWHNVMISRDTSNLHTVKIDTKITTQI--TAGARNLDLKSDLYIGGVAKETYKSLPK 142
Query: 283 KVKIKSSFIG 292
V K F G
Sbjct: 143 LVHAKEGFQG 152
Score = 56.6 bits (136), Expect = 3e-09
Identities = 24/173 (13%), Positives = 46/173 (26%), Gaps = 42/173 (24%)
Query: 4 SPQAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS-----------TPY 52
S +A R I F + +L GD++ L I +G +
Sbjct: 247 STRADRLAIGFSTVQKEAVLVRVDSSSG-LGDYLELHIHQGKIGVKFNVGTDDIAIEESN 305
Query: 53 RPYAD-----ITVHRTVRTLIL--------PYTVPSGLFSRITFREPVFVGGRGNTSGLS 99
D + R+ L + + + +GG
Sbjct: 306 AIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGG-------- 357
Query: 100 DKLPTEKGFKGCIRHLDINDHLY-------NFNVSPGGDSLKGIDVALLRPAT 145
+ F+G + L N + N++ G+ +V+ L
Sbjct: 358 --KEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRLVGEVSRLENLY 408
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 131 bits (331), Expect = 1e-34
Identities = 61/341 (17%), Positives = 124/341 (36%), Gaps = 56/341 (16%)
Query: 2 TGSPQAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEF------------- 48
+ + FK +G++ TG+ + D++ L + G V
Sbjct: 250 PIQSSSDEITLSFKTLQRNGLMLHTGK----SADYVNLALKNGAVSLVINLGSGAFEALV 305
Query: 49 STPYRPYAD-----ITVHRTVRTLIL------PYTVPS-GLFSRITFREPVFVGGRGNTS 96
+ D + V R +R + + T + ++ + + +VGG +T+
Sbjct: 306 EPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTA 365
Query: 97 GLSDKLPTEKGFKGCIRHLDINDHLYNFNVSPGGDSLKGIDVALLRPATHYQVSSIPDQV 156
L P F GC++ + ++ +S A + + D +
Sbjct: 366 DLP-GSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPI 424
Query: 157 YQGLGEQYLSL--------LDLTIVFKAIEPNGILLYNG----------HRADGVGDFIA 198
E ++SL ++ F+ EPNG++L++ H DF A
Sbjct: 425 TFETPESFISLPKWNAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFA 484
Query: 199 LYLNDRYVDFTFDLGTGAATLRSSN-PISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSP 257
+ + D ++ D+G+G +++ ++ GEW + R GR + V+ + +P
Sbjct: 485 IEMLDGHLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTP-YTAP 543
Query: 258 GPFTQLSLSLSLYLGGVPD------YNIVSPKVKIKSSFIG 292
G L L LYLGG+P+ + + ++G
Sbjct: 544 GESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVG 584
Score = 129 bits (325), Expect = 9e-34
Identities = 65/382 (17%), Positives = 117/382 (30%), Gaps = 98/382 (25%)
Query: 2 TGSPQAW-RFP-----------IQFKPESWDGILFLTGERDDLNGDFMTLLIFEG-YVEF 48
G+ W RFP Q K S G++ + DF+ L++ G ++
Sbjct: 4 PGAEGQWTRFPKWNACCESEMSFQLKTRSARGLVLYFDDEG--FCDFLELILTRGGRLQL 61
Query: 49 S-----------TPYRPYAD-----ITVHRTVRTLIL-------PYTVPSGLFSRITFRE 85
S P D + + R R L + +T
Sbjct: 62 SFSIFCAEPATLLTDTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDMTVFS 121
Query: 86 PVFVGGRGNTSGLSDKLPT------EKGFKGCIRHLDINDHLYNFNVSPGGDSLKGIDVA 139
+FVGG + T + FKG IR + + L S +
Sbjct: 122 GLFVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNS 181
Query: 140 LLR-------------------------------PATHYQV----SSIPDQVYQGLGEQY 164
T ++ + + G +Y
Sbjct: 182 GGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEY 241
Query: 165 LSL-----------LDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLG 213
++T+ FK ++ NG++L+ G D++ L L + V +LG
Sbjct: 242 FCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKS----ADYVNLALKNGAVSLVINLG 297
Query: 214 TGAATLRSS---NPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLY 270
+GA + W +++TR R + VD ++ + +T L Y
Sbjct: 298 SGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFY 357
Query: 271 LGGVPDYNIVSPKVKIKSSFIG 292
+GG P + P + ++F+G
Sbjct: 358 VGGSPSTADL-PGSPVSNNFMG 378
Score = 127 bits (320), Expect = 5e-33
Identities = 61/333 (18%), Positives = 121/333 (36%), Gaps = 72/333 (21%)
Query: 12 IQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS------------TPYRPYAD-- 57
QFK S DG++ DF+ + + +GY+ + + +P D
Sbjct: 864 FQFKTTSLDGLILYNSGD---GNDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQ 920
Query: 58 ---ITVHRTVRTLIL------PYTVPSGLFSRITFREPVFVGG--RGNTSGLSDKLPTEK 106
+ + R L T + + + +++GG + L + ++
Sbjct: 921 WHNVMISRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKE 980
Query: 107 GFKGCIRHLDINDHLYNF---------NVSPGGDSLK-----------GIDVALL----- 141
GF+GC+ +D+N L + + G + G+ +
Sbjct: 981 GFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSC 1040
Query: 142 -------------RPATHYQVSSIPDQV---YQGLGEQYLSLLDLTIVFKAIEPNGILLY 185
P T Y S Q+ + L I F ++ +L+
Sbjct: 1041 DCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVR 1100
Query: 186 NGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSN-PISLGEWRKLRLTRTGRHAYL 244
+ G+GD++ L+++ + F++GT + SN I+ G++ +R TR+G +A L
Sbjct: 1101 -VDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL 1159
Query: 245 QVDRFPSSQILSPG-PFTQLSLSLSLYLGGVPD 276
QVD +P + G T + ++ +GG
Sbjct: 1160 QVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ 1192
Score = 113 bits (283), Expect = 3e-28
Identities = 68/326 (20%), Positives = 116/326 (35%), Gaps = 52/326 (15%)
Query: 2 TGSPQAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS----------TP 51
+A ++F+ + GIL T RD + D + L + G V+ +
Sbjct: 676 VMHTEAEDVSLRFRSQRAYGILMATTSRD--SADTLRLELDAGRVKLTVNLGKGPETLFA 733
Query: 52 YRPYAD-----ITVHRTVRTLIL-------PYTVPSGLFSRITFREPVFVGGRGNTSGLS 99
D + V R ++L L +G +R+ F S
Sbjct: 734 GYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSS 793
Query: 100 DKLPTEKGFKGCIRHLDINDHLYNFNVSPGGDSLKGIDVALLRPATHYQVSSIPDQVYQG 159
F G ++ L N Y G ++ + I D V
Sbjct: 794 ----VPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNA------RFGFRNIIADPVTFK 843
Query: 160 LGEQYLSL--------LDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFD 211
Y++L + L FK +G++LYN DFI + L Y+ + FD
Sbjct: 844 TKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNS---GDGNDFIVVELVKGYLHYVFD 900
Query: 212 LGTGAATLR--SSNPISLGEWRKLRLTRTGRHAY-LQVDRFPSSQILSPGPFTQLSLSLS 268
LG GA ++ S+ P++ +W + ++R + + +++D ++Q L L
Sbjct: 901 LGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQ--ITAGARNLDLKSD 958
Query: 269 LYLGGVPD--YNIVSPKVKIKSSFIG 292
LY+GGV Y + V K F G
Sbjct: 959 LYIGGVAKETYKSLPKLVHAKEGFQG 984
Score = 108 bits (270), Expect = 1e-26
Identities = 52/343 (15%), Positives = 100/343 (29%), Gaps = 80/343 (23%)
Query: 12 IQFKPESWDGILFLTGERD----------DLNGDFMTLLIFEGYVEFS-----------T 50
F+ +G++ + + + DF + + +G++
Sbjct: 448 FDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKIKA 507
Query: 51 PYRPYAD-----ITVHRTVRTLIL------PYTVPSGLFSRITFREPVFVGGRGNTSGLS 99
+ D + R R+ + G + + +++GG
Sbjct: 508 LQKKVNDGEWYHVDFQRDGRSGTISVNTLRTPYTAPGESEILDLDDELYLGGLPENKAGL 567
Query: 100 D------KLPTEKGFKGCIRHLDINDHLYNFNVSPGGDSLKGIDVALLRPATHYQVSSI- 152
G+ GCIR L I+ + S G+ + R +S+
Sbjct: 568 VFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPC 627
Query: 153 -----------------PDQVYQGL------------GEQYLSL----------LDLTIV 173
Y G G ++ + D+++
Sbjct: 628 KNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLR 687
Query: 174 FKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWRKL 233
F++ GIL+ R D + L L+ V T +LG G TL + ++ EW +
Sbjct: 688 FRSQRAYGILMATTSRDSA--DTLRLELDAGRVKLTVNLGKGPETLFAGYNLNDNEWHTV 745
Query: 234 RLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPD 276
R+ R G+ L VD + G T+L
Sbjct: 746 RVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITER 788
Score = 59.5 bits (143), Expect = 5e-10
Identities = 20/140 (14%), Positives = 36/140 (25%), Gaps = 35/140 (25%)
Query: 4 SPQAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS-----------TPY 52
S +A R I F + +L GD++ L I +G +
Sbjct: 1079 STRADRLAIGFSTVQKEAVLVRVDSSSG-LGDYLELHIHQGKIGVKFNVGTDDIAIEESN 1137
Query: 53 RPYAD-----ITVHRTVRTLIL--------PYTVPSGLFSRITFREPVFVGGRGNTSGLS 99
D + R+ L + + + +GG
Sbjct: 1138 AIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGG-------- 1189
Query: 100 DKLPTEKGFKGCIRHLDIND 119
+ F+G + L N
Sbjct: 1190 --KEQGQPFQGQLSGLYYNG 1207
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4
PDB: 1pz8_A 1pz9_A 1q56_A
Length = 204
Score = 121 bits (305), Expect = 7e-34
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 168 LDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISL 227
+ K G++L++G D+IAL + D +V +DLG+ LRS+ PI+
Sbjct: 50 NHFELSIKTEATQGLILWSGKG-LERSDYIALAIVDGFVQMMYDLGSKPVVLRSTVPINT 108
Query: 228 GEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSP-KVKI 286
W ++ R R LQV SP TQL +L+LGG+ ++
Sbjct: 109 NHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAHKLPKAY 168
Query: 287 KSSFIG 292
+ FIG
Sbjct: 169 STGFIG 174
Score = 68.0 bits (166), Expect = 8e-14
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 24/139 (17%)
Query: 9 RFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS----------TPYRPYAD- 57
F + K E+ G++ +G+ + D++ L I +G+V+ P
Sbjct: 51 HFELSIKTEATQGLILWSGKGLE-RSDYIALAIVDGFVQMMYDLGSKPVVLRSTVPINTN 109
Query: 58 ----ITVHRTVRTLIL------PYTVPS-GLFSRITFREPVFVGG-RGNTSGLSDKLPTE 105
I +R R L P T S +++ +++GG +
Sbjct: 110 HWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAHKLPKAYS 169
Query: 106 KGFKGCIRHLDINDHLYNF 124
GF GCIR + ++ +
Sbjct: 170 TGFIGCIRDVIVDRQELHL 188
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller,
laminin-G, signaling, protein binding; HET: NAG; 2.85A
{Rattus norvegicus} PDB: 3v65_A
Length = 191
Score = 118 bits (296), Expect = 1e-32
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 3/149 (2%)
Query: 146 HYQVSSIPDQVYQGL-GEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDR 204
Y + I ++ + E+ L + + G++L+ G A+ D++AL + D
Sbjct: 14 EYLNAVIESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGKAAER-ADYMALAIVDG 72
Query: 205 YVDFTFDLGTGAATLRSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLS 264
++ ++DLG+ LRS+ ++ W ++R R R LQV SP TQL
Sbjct: 73 HLQLSYDLGSQPVVLRSTVKVNTNRWLRIRAHREHREGSLQVGNEAPVTGSSPLGATQLD 132
Query: 265 LSLSLYLGGVPDYNIVSPK-VKIKSSFIG 292
+L+LGG+ + + F+G
Sbjct: 133 TDGALWLGGLQKLPVGQALPKAYGTGFVG 161
Score = 66.4 bits (162), Expect = 2e-13
Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 24/140 (17%)
Query: 8 WRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS----------TPYRPYAD 57
F + + E+ G++ G+ + D+M L I +G+++ S
Sbjct: 37 NHFELSLRTEATQGLVLWIGKAAE-RADYMALAIVDGHLQLSYDLGSQPVVLRSTVKVNT 95
Query: 58 -----ITVHRTVRTLIL-------PYTVPSGLFSRITFREPVFVGG-RGNTSGLSDKLPT 104
I HR R L +++ +++GG + G +
Sbjct: 96 NRWLRIRAHREHREGSLQVGNEAPVTGSSPLGATQLDTDGALWLGGLQKLPVGQALPKAY 155
Query: 105 EKGFKGCIRHLDINDHLYNF 124
GF GC+R + + +
Sbjct: 156 GTGFVGCLRDVVVGHRQLHL 175
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal
binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Length = 195
Score = 117 bits (295), Expect = 2e-32
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 4/127 (3%)
Query: 169 DLTIVFKAIEPNGILLYNGHRADGVG---DFIALYLNDRYVDFTFDLGTGAATLRSSNPI 225
+ + + +G+LL+ G G DFI+L L D ++ F + LG+G A L S +PI
Sbjct: 33 TIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSGEARLVSEDPI 92
Query: 226 SLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVK 285
+ GEW ++ R GR +QVD SPGP ++ S+Y+GG PD + +
Sbjct: 93 NDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATL-TGGR 151
Query: 286 IKSSFIG 292
S G
Sbjct: 152 FSSGITG 158
Score = 66.1 bits (161), Expect = 3e-13
Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 26/145 (17%)
Query: 12 IQFKPESWDGILFLTGERDDLNG---DFMTLLIFEGYVEFS----------TPYRPYAD- 57
++ + + G+L G G DF++L + +G++ F P D
Sbjct: 36 LEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSGEARLVSEDPINDG 95
Query: 58 ----ITVHRTVRTLIL-------PYTVPSGLFSRITFREPVFVGGRGNTSGLSDKLPTEK 106
+T R R + G + + V++GG + + L+
Sbjct: 96 EWHRVTALREGRRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATLT-GGRFSS 154
Query: 107 GFKGCIRHLDINDHLYNFNVSPGGD 131
G GC+++L ++ D
Sbjct: 155 GITGCVKNLVLHSARPGAPPPQPLD 179
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A
{Bos taurus}
Length = 182
Score = 106 bits (267), Expect = 2e-28
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Query: 157 YQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGA 216
Q + D+++ F++ GIL+ R D + L L+ V T +LG G
Sbjct: 18 IQLPVVMHTEAEDVSLRFRSQRAYGILMATTSR--DSADTLRLELDAGRVKLTVNLGKGP 75
Query: 217 ATLRSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPD 276
TL + ++ EW +R+ R G+ L VD + G T+L ++ G + +
Sbjct: 76 ETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFH-NIETGIITE 134
Query: 277 YNIVSPKVKIKSSFIG 292
+S + S+FIG
Sbjct: 135 RRYLSS---VPSNFIG 147
Score = 56.0 bits (135), Expect = 8e-10
Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 28/141 (19%)
Query: 4 SPQAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS----------TPYR 53
+A ++F+ + GIL T RD + D + L + G V+ +
Sbjct: 25 HTEAEDVSLRFRSQRAYGILMATTSRD--SADTLRLELDAGRVKLTVNLGKGPETLFAGY 82
Query: 54 PYAD-----ITVHRTVRTLIL-------PYTVPSGLFSRITFREPVFVGGRGNTSGLSDK 101
D + V R ++L L +G +R+ F + G +
Sbjct: 83 NLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEF-HNIETGI---ITERRYL 138
Query: 102 LPTEKGFKGCIRHLDINDHLY 122
F G ++ L N Y
Sbjct: 139 SSVPSNFIGHLQSLTFNGMAY 159
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Length = 184
Score = 105 bits (263), Expect = 8e-28
Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 8/130 (6%)
Query: 166 SLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATL---RSS 222
S ++T+ FK ++ NG++L+ G D++ L L + V +LG+GA +
Sbjct: 28 SSDEITLSFKTLQRNGLMLHTGKS----ADYVNLALKNGAVSLVINLGSGAFEALVEPVN 83
Query: 223 NPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSP 282
+ W +++TR R + VD ++ + +T L Y+GG P P
Sbjct: 84 GKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTA-DLP 142
Query: 283 KVKIKSSFIG 292
+ ++F+G
Sbjct: 143 GSPVSNNFMG 152
Score = 67.9 bits (166), Expect = 5e-14
Identities = 23/149 (15%), Positives = 50/149 (33%), Gaps = 30/149 (20%)
Query: 4 SPQAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS-------------T 50
+ + FK +G++ TG+ D++ L + G V
Sbjct: 26 QSSSDEITLSFKTLQRNGLMLHTGKS----ADYVNLALKNGAVSLVINLGSGAFEALVEP 81
Query: 51 PYRPYAD-----ITVHRTVRTLIL-------PYTVPSGLFSRITFREPVFVGGRGNTSGL 98
+ D + V R +R + + ++ + + +VGG +T+ L
Sbjct: 82 VNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADL 141
Query: 99 SDKLPTEKGFKGCIRHLDINDHLYNFNVS 127
P F GC++ + ++ +S
Sbjct: 142 P-GSPVSNNFMGCLKEVVYKNNDVRLELS 169
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 104 bits (261), Expect = 8e-26
Identities = 48/334 (14%), Positives = 93/334 (27%), Gaps = 51/334 (15%)
Query: 4 SPQAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS----------TPYR 53
P F+ +GIL G D ++ L + G +E +
Sbjct: 59 QPTRLVAEFDFRTFDPEGILLFAGGHQD--STWIVLALRAGRLELQLRYNGVGRVTSSGP 116
Query: 54 PYAD-----ITVHRTVRTLIL--------PYTVPSGLF--SRITFREPVFVGGRGNTSGL 98
I+V R L++ V LF R + + VGG
Sbjct: 117 VINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPF-HEK 175
Query: 99 SDKLPTEKGFKGCIRHLDINDHLYNFNVSPGGDSLKGIDVALLRPATHYQVSSIPD---- 154
P GC+R + + + + ++ + Y S
Sbjct: 176 DLVQPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQCFSVTERGSFYPGSGFAFYSLD 235
Query: 155 --QVYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDL 212
+ +G + +++ + G+L D +++ L D +
Sbjct: 236 YMRTPLDVGTESTWEVEVVAHIRPAADTGVLFALW-APDLRAVPLSVALVDYHSTKKLKK 294
Query: 213 G------TGAATLRSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPF------ 260
A + G+ + ++ A L+VD +S
Sbjct: 295 QLVVLAVEHTALALMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAV 354
Query: 261 --TQLSLSLSLYLGGVPDYNIVSPKVKIKSSFIG 292
L + + GG+PD + S V + + G
Sbjct: 355 LERHLRSPVLTFAGGLPDVPVTSAPV--TAFYRG 386
Score = 35.9 bits (82), Expect = 0.011
Identities = 22/161 (13%), Positives = 45/161 (27%), Gaps = 42/161 (26%)
Query: 3 GSPQAWRFPI--QFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEF------------ 48
G+ W + +P + G+LF DL +++ + + +
Sbjct: 244 GTESTWEVEVVAHIRPAADTGVLFALW-APDLRAVPLSVALVDYHSTKKLKKQLVVLAVE 302
Query: 49 ----STPYRPYAD-----ITVHRTVRTLIL-------PYTVPSGLFSR--------ITFR 84
+ D +TV L V + +
Sbjct: 303 HTALALMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSP 362
Query: 85 EPVFVGGRGNTSGLSDKLPTEKGFKGCIRHLDINDHLYNFN 125
F GG + P ++GC+ L++N L + +
Sbjct: 363 VLTFAGGLPDVP--VTSAPVTAFYRGCMT-LEVNRRLLDLD 400
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein;
HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB:
1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Length = 205
Score = 96.1 bits (239), Expect = 3e-24
Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 17/166 (10%)
Query: 141 LRPATHYQVSSIPDQVYQGLG-----EQYLSL-------LDLTIVFKAIEPNGILLYNGH 188
LRP Q + P V+ G ++ + + +P G++ Y
Sbjct: 1 LRPVLPTQSAHDPPAVHLSNGPGQEPIAVMTFDLTKITKTSSSFEVRTWDPEGVIFYGDT 60
Query: 189 RADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWRKLRLTRTGRHAYLQVDR 248
D+ L L D + T+ + + G W ++ + G L+VD
Sbjct: 61 N--PKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVDG 118
Query: 249 FPSSQI--LSPGPFTQLSLSLSLYLGGVPDYNIVSPKVKIKSSFIG 292
++ +S ++ + + LGG+ + ++ + + G
Sbjct: 119 EEVLRLRQVSGPLTSKRHPIMRIALGGLLF-PASNLRLPLVPALDG 163
Score = 56.5 bits (136), Expect = 7e-10
Identities = 23/141 (16%), Positives = 40/141 (28%), Gaps = 29/141 (20%)
Query: 12 IQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS----------TPYRPYAD---- 57
+ + +G++F D+ L + +G E D
Sbjct: 44 FEVRTWDPEGVIFYGDTNP--KDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWH 101
Query: 58 -ITVHRTVRTLIL---------PYTVPSGLFSRITFREPVFVGG-RGNTSGLSDKLPTEK 106
+ V +++L V L S+ + +GG S L LP
Sbjct: 102 QVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASNLR--LPLVP 159
Query: 107 GFKGCIRHLDINDHLYNFNVS 127
GC+R D + S
Sbjct: 160 ALDGCLRRDSWLDKQAEISAS 180
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium,
cell adhesion, EGF-like domain, glycoprotein, membrane,
metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C*
2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Length = 178
Score = 90.7 bits (225), Expect = 2e-22
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 169 DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSN-PISL 227
L I F ++ +L+ + G+GD++ L+++ + F++GT + SN I+
Sbjct: 32 RLAIGFSTVQKEAVLVRVD-SSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIIND 90
Query: 228 GEWRKLRLTRTGRHAYLQVDRFPSSQILS-PGPFTQLSLSLSLYLGGVPDYN 278
G++ +R TR+G +A LQVD +P + T + ++ +GG
Sbjct: 91 GKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQ 142
Score = 52.2 bits (125), Expect = 2e-08
Identities = 20/140 (14%), Positives = 36/140 (25%), Gaps = 35/140 (25%)
Query: 4 SPQAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS-----------TPY 52
S +A R I F + +L GD++ L I +G +
Sbjct: 27 STRADRLAIGFSTVQKEAVLVRVDSSSG-LGDYLELHIHQGKIGVKFNVGTDDIAIEESN 85
Query: 53 RPYAD-----ITVHRTVRTLIL--------PYTVPSGLFSRITFREPVFVGGRGNTSGLS 99
D + R+ L + + + +GG
Sbjct: 86 AIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGG-------- 137
Query: 100 DKLPTEKGFKGCIRHLDIND 119
+ F+G + L N
Sbjct: 138 --KEQGQPFQGQLSGLYYNG 155
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB:
3biw_E*
Length = 226
Score = 89.0 bits (220), Expect = 3e-21
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 169 DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSN-PISL 227
L I F ++ +L+ + G+GD++ L+++ + F++GT + SN I+
Sbjct: 66 RLAIGFSTVQKEAVLVRVD-SSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIIND 124
Query: 228 GEWRKLRLTRTGRHAYLQVDRFPSSQ-ILSPGPFTQLSLSLSLYLGGVPDY 277
G++ +R TR+G +A LQVD +P + + T + ++ +GG
Sbjct: 125 GKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQG 175
Score = 52.0 bits (124), Expect = 4e-08
Identities = 20/141 (14%), Positives = 36/141 (25%), Gaps = 35/141 (24%)
Query: 4 SPQAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS-----------TPY 52
S +A R I F + +L GD++ L I +G +
Sbjct: 61 STRADRLAIGFSTVQKEAVLVRVDSSSG-LGDYLELHIHQGKIGVKFNVGTDDIAIEESN 119
Query: 53 RPYAD-----ITVHRTVRTLIL--------PYTVPSGLFSRITFREPVFVGGRGNTSGLS 99
D + R+ L + + + +GG
Sbjct: 120 AIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGG-------- 171
Query: 100 DKLPTEKGFKGCIRHLDINDH 120
+ F+G + L N
Sbjct: 172 --KEQGQPFQGQLSGLYYNGL 190
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin
G-like domain, jellyroll, androgen binding protein
(ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4
PDB: 1kdk_A* 1kdm_A*
Length = 170
Score = 86.1 bits (213), Expect = 9e-21
Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 7/125 (5%)
Query: 168 LDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISL 227
+ + +P G++ Y D+ L L D + T+ + +
Sbjct: 28 TSSSFEVRTWDPEGVIFYGDTNPKD--DWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDD 85
Query: 228 GEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVKIK 287
G W ++ + G L+VD ++ + + LGG+ + ++ +
Sbjct: 86 GRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGHPI----MRIALGGLLF-PASNLRLPLV 140
Query: 288 SSFIG 292
+ G
Sbjct: 141 PALDG 145
Score = 51.0 bits (122), Expect = 4e-08
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 22/142 (15%)
Query: 12 IQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS----------TPYRPYAD---- 57
+ + +G++F D+ L + +G E D
Sbjct: 32 FEVRTWDPEGVIFYGDTNPK--DDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWH 89
Query: 58 -ITVHRTVRTLILP---YTVPSGLFSRITFREPVFVGGRGNTSGLSDKLPTEKGFKGCIR 113
+ V +++L V + +GG + +LP GC+R
Sbjct: 90 QVEVKMEGDSVLLEVDGEEVLRLRQVSGHPIMRIALGG-LLFPASNLRLPLVPALDGCLR 148
Query: 114 HLDINDHLYNFNVSPGGDSLKG 135
D + S SL+
Sbjct: 149 RDSWLDKQAEISASAPT-SLRS 169
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E*
3mw3_A*
Length = 220
Score = 84.0 bits (207), Expect = 1e-19
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 169 DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSN-PISL 227
L I F ++ +L+ + G+GD++ L+++ + F++GT + SN I+
Sbjct: 38 RLAIGFSTVQKEAVLVRVD-SSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIIND 96
Query: 228 GEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSL-----SLYLGGVPDYNIVSP 282
G++ +R TR+G +A LQVD +P + G L++ LG V D ++
Sbjct: 97 GKYHVVRFTRSGGNATLQVDSWPVIERYPAGNNDNERLAIARQRIPYRLGRVVDEWLLDK 156
Query: 283 K 283
Sbjct: 157 G 157
Score = 39.4 bits (91), Expect = 6e-04
Identities = 20/155 (12%), Positives = 35/155 (22%), Gaps = 45/155 (29%)
Query: 9 RFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS-----------TPYRPYAD 57
R I F + +L GD++ L I +G + D
Sbjct: 38 RLAIGFSTVQKEAVLVRVDSSSG-LGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIIND 96
Query: 58 -----ITVHRTVRTLIL------------PYTVPSGLFSRITFREPVFVGGRGNTSGLSD 100
+ R+ L + + R P +G + L
Sbjct: 97 GKYHVVRFTRSGGNATLQVDSWPVIERYPAGNNDNERLAIARQRIPYRLGRVVDEWLLDK 156
Query: 101 ----------------KLPTEKGFKGCIRHLDIND 119
+ F+G + L N
Sbjct: 157 GRQLTIFNSQATIIIGGKEQGQPFQGQLSGLYYNG 191
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.006
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 262 QLSLSLSLYLGGVPDYNIVSPKVKIKSS 289
+L SL LY D +P + IK++
Sbjct: 24 KLQASLKLY---ADD---SAPALAIKAT 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.009
Identities = 56/314 (17%), Positives = 94/314 (29%), Gaps = 112/314 (35%)
Query: 11 PIQFKPESWDGILFLTGERDDLNGDFMTLLIF------EGYVE-----FSTPYRPYADIT 59
P K S LF R G+ + IF + Y E + T Y
Sbjct: 136 PFDKKSNS---ALF----RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT-YHVLVGDL 187
Query: 60 VHRTVRTLILPYTVPSGLFSRITFREPVFVGGRGNTSGLSDKLPTEKGFKGCIRHLDIND 119
+ + TL S L E VF G L+I +
Sbjct: 188 IKFSAETL-------SELIRTTLDAEKVFTQG-----------------------LNILE 217
Query: 120 HLYNFNVSPGGDSLKGIDVAL----LRPATHYQVSSI-----PDQVY----------QGL 160
L N + +P D L I ++ + HY V++ P ++ QGL
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 161 -----------GEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFT 209
E + + KAI +L + G R + L ++ +
Sbjct: 278 VTAVAIAETDSWESFFVSVR-----KAIT---VLFFIGVRCYEA--YPNTSLPPSILEDS 327
Query: 210 FDLGTGAAT--LRSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSL 267
+ G + L SN ++ + + + +T H P+ + + +
Sbjct: 328 LENNEGVPSPMLSISN-LTQEQVQD-YVNKTNSH-------LPAGK----------QVEI 368
Query: 268 SLYLGGVPDYNIVS 281
SL G +VS
Sbjct: 369 SLVNG--AKNLVVS 380
Score = 33.1 bits (75), Expect = 0.13
Identities = 37/149 (24%), Positives = 49/149 (32%), Gaps = 55/149 (36%)
Query: 8 WRF-PIQFKPESWDGILF----LTGERDDLNGDFMTLLIFEGYVEFSTPYRPYADITVHR 62
RF P+ P F L D +N D + + V F+ I V+
Sbjct: 418 NRFLPV-ASP-------FHSHLLVPASDLINKDLV-----KNNVSFNAKD---IQIPVYD 461
Query: 63 T-----VRTLILPYTVPSGLFSRITFREPV---------------FVGGRGNTSGLSDKL 102
T +R L ++ + I R PV F G G SGL L
Sbjct: 462 TFDGSDLRVL--SGSISERIVDCII-RLPVKWETTTQFKATHILDF--GPGGASGLG-VL 515
Query: 103 PTEKGFKGC-IR-----HLDIN-DHLYNF 124
T + G +R LDIN D Y F
Sbjct: 516 -THRNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 30.4 bits (68), Expect = 0.88
Identities = 39/262 (14%), Positives = 61/262 (23%), Gaps = 98/262 (37%)
Query: 22 ILFLTGERDDLN-GDFMTLLIFEGYVEFSTPYRPYADITVHRTVRTLILPYTVPSGLFSR 80
+ +++ + G F +L EF Y DI H L+
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNL-CLTEFENCYLEGNDI--HALAAKLLQENDTTLVKTKE 121
Query: 81 I--TFREPVFVGGRGNTSGLSDKLPTEKGFKGCIRHLDIND-HLYN-FNVSPGGDSLKGI 136
+ + + R + L R + + L F GG
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSAL---------FRAVGEGNAQLVAIF----GG------ 162
Query: 137 DVALLRPATHYQVSSIPDQVYQGLGEQYLS-LLDLTIVFKAIEPNGILLYNGHRADGVGD 195
QG + Y L DL ++ Y+ VGD
Sbjct: 163 ---------------------QGNTDDYFEELRDL---YQT--------YHVL----VGD 186
Query: 196 FIA------LYLNDRYVDFTFDLGTGAATLRSSNPISLGEWRKLRLTRTGRHAYLQVDRF 249
I L +D G +++ EW L
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQG---------LNILEW----LENP--------SNT 225
Query: 250 PSSQILSPGPF-------TQLS 264
P L P QL+
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLA 247
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.24
Identities = 44/313 (14%), Positives = 90/313 (28%), Gaps = 97/313 (30%)
Query: 2 TGSPQA----WRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFSTP--YRP- 54
T +P+ I+ +WD + D L I E + P YR
Sbjct: 324 TTNPRRLSIIAES-IRDGLATWDN--WKHVNCDKLTT------IIESSLNVLEPAEYRKM 374
Query: 55 YADITVHRTVRTLILPYTV--PSGLFSRI----TFREPVFVGGRGNTSGLSDKLPTEKGF 108
+ ++ + P + P+ L S I + + V + L EK
Sbjct: 375 FDRLS--------VFPPSAHIPTILLSLIWFDVIKSDVMVV-----VNKLHKYSLVEK-- 419
Query: 109 KGCIRHLDINDHLYNFNVSPGGDSLKGIDVALLRPATHYQVSSIPDQVYQGLGEQY--LS 166
+ S+ I + L + +++ + + Y
Sbjct: 420 -------QPKESTI---------SIPSIYLELKVKLENEY------ALHRSIVDHYNIPK 457
Query: 167 LLDLTIVFKAIEPNGILLYNGH------RADGVGDFIALYLNDRYVDFTFDLGTGAATLR 220
D + + GH + + F ++L+ R+++
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE------------- 504
Query: 221 SSNPISLGEWRKLRLTRTGRHAY------LQVDRFPSSQILSPGP-FTQLSLSLSLYLGG 273
+K+R T +A LQ +F I P + +L ++ +L
Sbjct: 505 ----------QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 274 VPDYNIVSPKVKI 286
+ + I S +
Sbjct: 555 IEENLICSKYTDL 567
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2,
structure initiative, northeast structural genomics
consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP:
b.40.4.5 b.40.4.16 PDB: 2r7f_A
Length = 469
Score = 30.3 bits (69), Expect = 0.80
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 40 LIFEGYVEFSTPYRPYADITVHRTVRTLI 68
+ + Y + ++P R Y D+ VH+ +R +
Sbjct: 330 MGLDLYAQATSPMRRYLDLVVHQQLRAFL 358
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR
family, hydrolase; 2.35A {Escherichia coli} SCOP:
b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Length = 644
Score = 29.8 bits (68), Expect = 1.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 40 LIFEGYVEFSTPYRPYADITVHRTVRTLI 68
L E Y +++P R Y D+ HR ++ +I
Sbjct: 487 LGLEAYATWTSPIRKYGDMINHRLLKAVI 515
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding,
exonucle binding, mitochondrion, rRNA processing; 3.00A
{Saccharomyces cerevisiae}
Length = 977
Score = 29.0 bits (65), Expect = 2.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 40 LIFEGYVEFSTPYRPYADITVHRTVRTLI 68
L + Y F++P R Y D+ HR + I
Sbjct: 810 LAVDIYTHFTSPIRRYCDVVAHRQLAGAI 838
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA
degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A
{Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5
b.40.4.5 b.40.4.16
Length = 760
Score = 28.9 bits (65), Expect = 2.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 40 LIFEGYVEFSTPYRPYADITVHRTVRTLI 68
L + Y F++P R Y D+ HR + I
Sbjct: 593 LAVDIYTHFTSPIRRYCDVVAHRQLAGAI 621
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase,
phosphoprotein, transferase; 2.40A {Geobacter
sulfurreducens}
Length = 234
Score = 27.6 bits (62), Expect = 5.0
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Query: 10 FPIQFKPESWDGIL--FLTGERDDLNGDFMTLLIFE---GYVEFSTPY 52
++F+ +W + +G D L G ++ E ++F+ P+
Sbjct: 50 MTVEFRLGAWSEMFSALKSGRVDVLQG--IS--WSEKRARQIDFTPPH 93
>3exz_A MAOC-like dehydratase; Q2RSA1_rhort, NESG, RRR103A, structur
genomics, PSI-2, protein structure initiative; 2.30A
{Rhodospirillum rubrum}
Length = 154
Score = 26.5 bits (59), Expect = 7.3
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 63 TVRTLILPYTVPSGLFSRITFREPVFVG 90
V + + G + +++ P G
Sbjct: 68 LVTSGLPLAQGIIGAGTELSWPNPTRPG 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.142 0.434
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,672,741
Number of extensions: 284620
Number of successful extensions: 630
Number of sequences better than 10.0: 1
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 62
Length of query: 293
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 200
Effective length of database: 4,105,140
Effective search space: 821028000
Effective search space used: 821028000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)