RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5026
(293 letters)
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 86.4 bits (213), Expect = 4e-21
Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 15/180 (8%)
Query: 124 FNVSPGGDSLKGIDVAL-LRPATHYQVSSIPDQVYQGLGEQYLSL-------LDLTIVFK 175
+S D+ + I + A + + + G L L F+
Sbjct: 8 LKLSQDMDTCEDILPCVPFSVAKSVKSLYLGRM-FSGTPVIRLRFKRLQPTRLVAEFDFR 66
Query: 176 AIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLGEWRKLRL 235
+P GILL+ G D +I L L ++ S I+ G W+ + +
Sbjct: 67 TFDPEGILLFAGGHQDS--TWIVLALRAGRLELQLRYNGVGRVTSSGPVINHGMWQTISV 124
Query: 236 TRTGRHAYLQVDRFPSSQILSPGPFTQ---LSLSLSLYLGGVPDYNIVSPKVKIKSSFIG 292
R+ ++V+R +I G Q L+L +GG+P + I G
Sbjct: 125 EELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPF-HEKDLVQPINPRLDG 183
Score = 46.7 bits (110), Expect = 5e-07
Identities = 24/136 (17%), Positives = 36/136 (26%), Gaps = 30/136 (22%)
Query: 5 PQAWRFPI--QFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFSTPY---------- 52
Q R F+ +GIL G D ++ L + G +E Y
Sbjct: 54 LQPTRLVAEFDFRTFDPEGILLFAGGHQD--STWIVLALRAGRLELQLRYNGVGRVTSSG 111
Query: 53 RPYAD-----ITVHRTVRTLIL----------PYTVPSGLFSRITFREPVFVGGRGNTSG 97
I+V R L++ R + + VGG
Sbjct: 112 PVINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPF-HE 170
Query: 98 LSDKLPTEKGFKGCIR 113
P GC+R
Sbjct: 171 KDLVQPINPRLDGCMR 186
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 195
Score = 85.4 bits (210), Expect = 1e-20
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Query: 169 DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISLG 228
+ K G++L++G + D+IAL + D +V +DLG+ LRS+ PI+
Sbjct: 45 HFELSIKTEATQGLILWSG-KGLERSDYIALAIVDGFVQMMYDLGSKPVVLRSTVPINTN 103
Query: 229 EWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSP-KVKIK 287
W ++ R R LQV SP TQL +L+LGG+ ++
Sbjct: 104 HWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAHKLPKAYS 163
Query: 288 SSFIG 292
+ FIG
Sbjct: 164 TGFIG 168
Score = 51.9 bits (123), Expect = 1e-08
Identities = 22/143 (15%), Positives = 45/143 (31%), Gaps = 24/143 (16%)
Query: 6 QAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFSTPY----------RPY 55
Q+ F + K E+ G++ +G+ + D++ L I +G+V+ P
Sbjct: 42 QSNHFELSIKTEATQGLILWSGKGLE-RSDYIALAIVDGFVQMMYDLGSKPVVLRSTVPI 100
Query: 56 AD------------ITVHRTVRTLILPYTVPSGLFSRITFREPVFVGGRGNTSGLSD-KL 102
V +++ +++GG S
Sbjct: 101 NTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAHKLPK 160
Query: 103 PTEKGFKGCIRHLDINDHLYNFN 125
GF GCIR + ++ +
Sbjct: 161 AYSTGFIGCIRDVIVDRQELHLV 183
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 189
Score = 79.1 bits (194), Expect = 2e-18
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 3/154 (1%)
Query: 139 ALLRPATHYQVSSIPDQVYQGLGEQYLSLLDLTIVFKAIEPNGILLYNGHRADGVGDFIA 198
ALL + + +S + + L + + + +G+L Y DF
Sbjct: 11 ALLTGSKQFGLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARI--NHADFAT 68
Query: 199 LYLNDRYVDFTFDLGTGAATLRSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPG 258
+ L + + F++DLG+G + I+ G+W K+++ R + L VD S I SP
Sbjct: 69 VQLRNGFPYFSYDLGSGDTSTMIPTKINDGQWHKIKIVRVKQEGILYVDDASSQTI-SPK 127
Query: 259 PFTQLSLSLSLYLGGVPDYNIVSPKVKIKSSFIG 292
L + LY+GG+P + S G
Sbjct: 128 KADILDVVGILYVGGLPINYTTRRIGPVTYSLDG 161
Score = 55.6 bits (133), Expect = 5e-10
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 23/135 (17%)
Query: 12 IQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFSTPY----------RPYAD---- 57
++ + E+ G+LF + + DF T+ + G+ FS D
Sbjct: 44 LEVRTEAESGLLFYMARIN--HADFATVQLRNGFPYFSYDLGSGDTSTMIPTKINDGQWH 101
Query: 58 ---ITVHRTVRTLIL----PYTVPSGLFSRITFREPVFVGGRGNTSGLSDKLPTEKGFKG 110
I + L + T+ + ++VGG P G
Sbjct: 102 KIKIVRVKQEGILYVDDASSQTISPKKADILDVVGILYVGGLPINYTTRRIGPVTYSLDG 161
Query: 111 CIRHLDINDHLYNFN 125
C+R+L + + +
Sbjct: 162 CVRNLHMEQAPVDLD 176
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 185
Score = 78.7 bits (193), Expect = 2e-18
Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 8/129 (6%)
Query: 168 LDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISL 227
L + F+ P G+LL D + + + D + F D G G T I
Sbjct: 26 LLVEFEFRTTRPTGVLLGVS---SQKMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPG 82
Query: 228 ----GEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPK 283
G+W K+ + L VD T + +++GG P +
Sbjct: 83 HMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPG-GLNQFG 141
Query: 284 VKIKSSFIG 292
+ F G
Sbjct: 142 LTTNIRFRG 150
Score = 50.2 bits (119), Expect = 4e-08
Identities = 24/153 (15%), Positives = 42/153 (27%), Gaps = 30/153 (19%)
Query: 12 IQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFSTPYRPYADITVHR--------- 62
+F+ G+L + D M + + + + F ++
Sbjct: 30 FEFRTTRPTGVLLGVSSQ---KMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPGHMCN 86
Query: 63 -----------------TVRTLILPYTVPSGLFSRITFREPVFVGGRGNTSGLSDKLPTE 105
V + P+ + +PVFVGG L T
Sbjct: 87 GQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPG-GLNQFGLTTN 145
Query: 106 KGFKGCIRHLDINDHLYNFNVSPGGDSLKGIDV 138
F+GCIR L + +L+ V
Sbjct: 146 IRFRGCIRSLKLTKGTGKPLEVNFAKALELRGV 178
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 170
Score = 75.6 bits (185), Expect = 3e-17
Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 7/125 (5%)
Query: 168 LDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSNPISL 227
+ + +P G++ Y D+ L L D + T+ + +
Sbjct: 28 TSSSFEVRTWDPEGVIFYGDTN--PKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDD 85
Query: 228 GEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSLSLYLGGVPDYNIVSPKVKIK 287
G W ++ + G L+VD ++ + + LGG+ + ++ +
Sbjct: 86 GRWHQVEVKMEGDSVLLEVDGEEVLRLRQVS----GHPIMRIALGGLLF-PASNLRLPLV 140
Query: 288 SSFIG 292
+ G
Sbjct: 141 PALDG 145
Score = 50.5 bits (120), Expect = 2e-08
Identities = 18/134 (13%), Positives = 37/134 (27%), Gaps = 21/134 (15%)
Query: 13 QFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFSTPY---------------RPYAD 57
+ + +G++F D+ L + +G E +
Sbjct: 33 EVRTWDPEGVIFYGDTNP--KDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWHQ 90
Query: 58 ITVHRTVRTLILP---YTVPSGLFSRITFREPVFVGGRGNTSGLSDKLPTEKGFKGCIRH 114
+ V +++L V + +GG + +LP GC+R
Sbjct: 91 VEVKMEGDSVLLEVDGEEVLRLRQVSGHPIMRIALGGLLF-PASNLRLPLVPALDGCLRR 149
Query: 115 LDINDHLYNFNVSP 128
D + S
Sbjct: 150 DSWLDKQAEISASA 163
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 177
Score = 66.4 bits (161), Expect = 6e-14
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 169 DLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATLRSSN-PISL 227
L I F ++ +L+ + G+GD++ L+++ + F++GT + SN I+
Sbjct: 31 RLAIGFSTVQKEAVLVRVD-SSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIIND 89
Query: 228 GEWRKLRLTRTGRHAYLQVDRFPSSQILS-PGPFTQLSLSLSLYLGGVPDYN 278
G++ +R TR+G +A LQVD +P + T + ++ +GG
Sbjct: 90 GKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQ 141
Score = 39.0 bits (90), Expect = 2e-04
Identities = 20/143 (13%), Positives = 37/143 (25%), Gaps = 35/143 (24%)
Query: 4 SPQAWRFPIQFKPESWDGILFLTGERDDLNGDFMTLLIFEGYVEFS-----------TPY 52
S +A R I F + +L GD++ L I +G +
Sbjct: 26 STRADRLAIGFSTVQKEAVLVRVDSSSG-LGDYLELHIHQGKIGVKFNVGTDDIAIEESN 84
Query: 53 RPYAD-----ITVHRTVRTLIL--------PYTVPSGLFSRITFREPVFVGGRGNTSGLS 99
D + R+ L + + + +GG+
Sbjct: 85 AIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGK------- 137
Query: 100 DKLPTEKGFKGCIRHLDINDHLY 122
+ F+G + L N
Sbjct: 138 ---EQGQPFQGQLSGLYYNGLKV 157
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 218
Score = 59.2 bits (142), Expect = 5e-11
Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 25/143 (17%)
Query: 168 LDLTIVFKAIEPNGILLYNGHRADGVGDFIALYLNDRYVDFTFDLGTGAATL-------- 219
+++ + G+L D A+ L+ VD+ +
Sbjct: 47 VEVVAHIRPAADTGVLFALWA-----PDLRAVPLSVALVDYHSTKKLKKQLVVLAVEHTA 101
Query: 220 --RSSNPISLGEWRKLRLTRTGRHAYLQVDRFPSSQILSPGPFTQLSLSL--------SL 269
+ G+ + ++ A L+VD +S + L
Sbjct: 102 LALMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSPVLT 161
Query: 270 YLGGVPDYNIVSPKVKIKSSFIG 292
+ GG+PD + S V + + G
Sbjct: 162 FAGGLPDVPVTSAPV--TAFYRG 182
Score = 38.4 bits (88), Expect = 4e-04
Identities = 22/160 (13%), Positives = 43/160 (26%), Gaps = 40/160 (25%)
Query: 3 GSPQAWRFPIQ--FKPESWDGILFLTGERD---------------DLNGDFMTLLIFEGY 45
G+ W + +P + G+LF D +++ +
Sbjct: 40 GTESTWEVEVVAHIRPAADTGVLFALWAPDLRAVPLSVALVDYHSTKKLKKQLVVLAVEH 99
Query: 46 VEFSTPYRPYAD-----ITVHRTVRTLIL---------------PYTVPSGLFSRITFRE 85
+ D +TV L + L +
Sbjct: 100 TALALMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSPV 159
Query: 86 PVFVGGRGNTSGLSDKLPTEKGFKGCIRHLDINDHLYNFN 125
F GG + S P ++GC+ L++N L + +
Sbjct: 160 LTFAGGLPDVPVTS--APVTAFYRGCMT-LEVNRRLLDLD 196
>d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 416
Score = 32.7 bits (73), Expect = 0.052
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 40 LIFEGYVEFSTPYRPYADITVHRTVRTLI 68
L + Y F++P R Y D+ HR + I
Sbjct: 340 LAVDIYTHFTSPIRRYCDVVAHRQLAGAI 368
>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020
{Deinococcus radiodurans [TaxId: 1299]}
Length = 401
Score = 31.9 bits (71), Expect = 0.088
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 40 LIFEGYVEFSTPYRPYADITVHRTVRTLI 68
+ + Y + ++P R Y D+ VH+ +R +
Sbjct: 328 MGLDLYAQATSPMRRYLDLVVHQQLRAFL 356
>d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia
coli [TaxId: 562]}
Length = 385
Score = 31.1 bits (69), Expect = 0.15
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 40 LIFEGYVEFSTPYRPYADITVHRTVRTLILPYTVP 74
L E Y +++P R Y D+ HR ++ +I T
Sbjct: 315 LGLEAYATWTSPIRKYGDMINHRLLKAVIKGETAT 349
>d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus
[TaxId: 4844]}
Length = 265
Score = 27.9 bits (61), Expect = 1.4
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 4/112 (3%)
Query: 23 LFLTGERDDLNGDFMTLLIFEGYVEFSTPYRPYADITVHRTVRTLILPYTVPSGLFSRIT 82
+ L L+ +++ G + + Y + T RT+ VP
Sbjct: 152 MDLYQREPRLSPKNLSIFTVGGPRVGNPTFAYYVESTGIPFQRTVHKRDIVPHVPPQSFG 211
Query: 83 FREP---VFV-GGRGNTSGLSDKLPTEKGFKGCIRHLDINDHLYNFNVSPGG 130
F P ++ G N + ++ T+ + I DHL F+++ G
Sbjct: 212 FLHPGVESWIKSGTSNVQICTSEIETKDCSNSIVPFTSILDHLSYFDINEGS 263
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.142 0.434
Gapped
Lambda K H
0.267 0.0432 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,138,597
Number of extensions: 54035
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 19
Length of query: 293
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 208
Effective length of database: 1,240,546
Effective search space: 258033568
Effective search space used: 258033568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)