Query psy503
Match_columns 333
No_of_seqs 179 out of 1784
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 23:59:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02600 enoyl-CoA hydratase 100.0 2.3E-57 4.9E-62 417.0 28.1 251 44-333 1-251 (251)
2 PRK07657 enoyl-CoA hydratase; 100.0 2E-56 4.3E-61 412.9 28.9 251 44-333 10-260 (260)
3 PLN02664 enoyl-CoA hydratase/d 100.0 2.9E-56 6.3E-61 414.8 29.0 261 34-333 4-275 (275)
4 PRK06127 enoyl-CoA hydratase; 100.0 3.7E-56 8.1E-61 412.9 29.6 257 35-333 11-269 (269)
5 PRK06142 enoyl-CoA hydratase; 100.0 4.1E-56 8.9E-61 413.3 28.9 250 44-332 12-272 (272)
6 PRK09076 enoyl-CoA hydratase; 100.0 5.4E-56 1.2E-60 409.5 28.9 249 44-332 9-257 (258)
7 PRK08150 enoyl-CoA hydratase; 100.0 6.1E-56 1.3E-60 408.3 28.7 246 45-332 9-254 (255)
8 PRK05862 enoyl-CoA hydratase; 100.0 8.1E-56 1.8E-60 408.1 28.9 247 45-333 11-257 (257)
9 PRK05980 enoyl-CoA hydratase; 100.0 8.6E-56 1.9E-60 408.6 28.3 248 44-330 9-260 (260)
10 KOG1680|consensus 100.0 5.7E-57 1.2E-61 403.8 19.4 261 30-332 29-289 (290)
11 PRK05809 3-hydroxybutyryl-CoA 100.0 1.4E-55 3.1E-60 407.2 29.1 250 45-333 11-260 (260)
12 TIGR02280 PaaB1 phenylacetate 100.0 1.3E-55 2.8E-60 406.5 28.3 249 44-333 5-256 (256)
13 PRK06563 enoyl-CoA hydratase; 100.0 9.8E-56 2.1E-60 407.1 26.5 250 44-333 5-255 (255)
14 PRK09674 enoyl-CoA hydratase-i 100.0 2E-55 4.2E-60 405.1 27.7 248 44-333 8-255 (255)
15 PRK08140 enoyl-CoA hydratase; 100.0 3.9E-55 8.5E-60 404.6 29.0 248 45-333 11-262 (262)
16 PRK07658 enoyl-CoA hydratase; 100.0 2.9E-55 6.3E-60 404.4 27.9 249 44-333 8-257 (257)
17 PRK08258 enoyl-CoA hydratase; 100.0 4.8E-55 1E-59 407.1 29.6 250 44-333 23-277 (277)
18 PRK08138 enoyl-CoA hydratase; 100.0 3.6E-55 7.9E-60 404.6 28.4 248 44-333 14-261 (261)
19 PRK08139 enoyl-CoA hydratase; 100.0 5.8E-55 1.3E-59 404.2 29.3 249 44-333 17-266 (266)
20 PRK07799 enoyl-CoA hydratase; 100.0 3.5E-55 7.5E-60 405.2 27.6 249 44-333 11-263 (263)
21 PRK05995 enoyl-CoA hydratase; 100.0 5E-55 1.1E-59 403.9 28.4 248 45-333 11-262 (262)
22 PRK09245 enoyl-CoA hydratase; 100.0 5E-55 1.1E-59 404.8 28.0 249 45-333 10-266 (266)
23 PRK06143 enoyl-CoA hydratase; 100.0 6.1E-55 1.3E-59 401.9 27.5 246 42-327 11-256 (256)
24 PRK05981 enoyl-CoA hydratase; 100.0 7.1E-55 1.5E-59 403.8 27.9 249 45-333 11-266 (266)
25 PRK06494 enoyl-CoA hydratase; 100.0 1.3E-54 2.8E-59 400.6 28.5 248 44-333 10-259 (259)
26 PRK08252 enoyl-CoA hydratase; 100.0 1.4E-54 3.1E-59 399.1 28.2 246 44-333 9-254 (254)
27 PRK07468 enoyl-CoA hydratase; 100.0 2.1E-54 4.5E-59 399.8 28.8 247 45-332 12-261 (262)
28 PRK07659 enoyl-CoA hydratase; 100.0 1.7E-54 3.7E-59 399.9 27.8 247 45-333 13-260 (260)
29 TIGR01929 menB naphthoate synt 100.0 1.8E-54 3.9E-59 399.5 27.6 248 45-332 10-258 (259)
30 PRK05674 gamma-carboxygeranoyl 100.0 1.2E-54 2.6E-59 401.9 26.4 256 34-332 4-263 (265)
31 PRK07511 enoyl-CoA hydratase; 100.0 2.5E-54 5.5E-59 398.8 27.8 248 44-331 9-259 (260)
32 PRK06210 enoyl-CoA hydratase; 100.0 2.6E-54 5.7E-59 401.2 28.1 249 45-333 12-272 (272)
33 TIGR03210 badI 2-ketocyclohexa 100.0 2.1E-54 4.5E-59 398.5 27.0 248 44-332 8-255 (256)
34 PRK06688 enoyl-CoA hydratase; 100.0 3E-54 6.4E-59 398.1 27.3 248 45-333 12-259 (259)
35 PRK07327 enoyl-CoA hydratase; 100.0 3E-54 6.5E-59 399.9 27.4 256 34-332 10-267 (268)
36 PRK06144 enoyl-CoA hydratase; 100.0 4.3E-54 9.4E-59 397.6 27.6 246 45-333 15-262 (262)
37 PRK05864 enoyl-CoA hydratase; 100.0 6.9E-54 1.5E-58 399.1 29.1 251 44-333 16-275 (276)
38 PRK03580 carnitinyl-CoA dehydr 100.0 6.3E-54 1.4E-58 396.4 28.0 249 44-333 9-261 (261)
39 PRK06495 enoyl-CoA hydratase; 100.0 7.6E-54 1.7E-58 395.0 27.9 246 44-333 10-257 (257)
40 PRK07396 dihydroxynaphthoic ac 100.0 1E-53 2.2E-58 397.3 28.7 248 44-332 19-268 (273)
41 PRK11423 methylmalonyl-CoA dec 100.0 7.6E-54 1.6E-58 395.7 27.2 249 45-333 11-261 (261)
42 PRK08260 enoyl-CoA hydratase; 100.0 2.1E-53 4.5E-58 399.5 28.7 250 45-333 11-278 (296)
43 PRK07509 enoyl-CoA hydratase; 100.0 1.5E-53 3.3E-58 394.1 27.1 246 45-332 10-262 (262)
44 PRK09120 p-hydroxycinnamoyl Co 100.0 1.7E-53 3.6E-58 396.2 27.1 254 34-330 7-267 (275)
45 PRK06072 enoyl-CoA hydratase; 100.0 2.3E-53 5.1E-58 389.7 27.5 243 44-333 6-248 (248)
46 PLN02921 naphthoate synthase 100.0 6.7E-53 1.5E-57 399.5 29.3 260 32-332 62-322 (327)
47 PRK07938 enoyl-CoA hydratase; 100.0 4.7E-53 1E-57 387.9 27.1 243 42-328 6-249 (249)
48 PLN02888 enoyl-CoA hydratase 100.0 5.4E-53 1.2E-57 390.8 27.5 244 44-330 16-261 (265)
49 PRK07260 enoyl-CoA hydratase; 100.0 5E-53 1.1E-57 389.1 26.9 243 45-327 9-255 (255)
50 PRK07854 enoyl-CoA hydratase; 100.0 8.3E-53 1.8E-57 384.9 27.9 237 45-333 7-243 (243)
51 TIGR03189 dienoyl_CoA_hyt cycl 100.0 9.9E-53 2.1E-57 386.1 28.1 242 45-333 8-251 (251)
52 KOG1679|consensus 100.0 2.4E-53 5.1E-58 366.1 18.9 266 33-333 26-291 (291)
53 COG1024 CaiD Enoyl-CoA hydrata 100.0 2.6E-52 5.7E-57 384.7 27.1 245 45-330 12-257 (257)
54 PRK07827 enoyl-CoA hydratase; 100.0 3E-52 6.4E-57 385.0 26.7 244 45-331 13-259 (260)
55 PRK06023 enoyl-CoA hydratase; 100.0 3.2E-52 6.9E-57 382.9 26.7 237 47-325 15-251 (251)
56 PRK05870 enoyl-CoA hydratase; 100.0 2.5E-52 5.4E-57 383.2 25.4 240 44-325 9-249 (249)
57 PRK05617 3-hydroxyisobutyryl-C 100.0 1.6E-52 3.6E-57 400.0 25.1 250 44-333 9-326 (342)
58 PRK12478 enoyl-CoA hydratase; 100.0 3.5E-52 7.7E-57 391.1 25.8 246 44-332 11-280 (298)
59 PRK08321 naphthoate synthase; 100.0 1.1E-51 2.4E-56 388.5 28.9 249 45-333 32-298 (302)
60 PRK08259 enoyl-CoA hydratase; 100.0 5.1E-52 1.1E-56 382.1 25.7 240 45-327 10-249 (254)
61 PF00378 ECH: Enoyl-CoA hydrat 100.0 1.2E-52 2.7E-57 384.2 20.3 242 44-325 4-245 (245)
62 PLN03214 probable enoyl-CoA hy 100.0 1.6E-51 3.6E-56 383.1 27.2 243 45-327 19-265 (278)
63 TIGR03222 benzo_boxC benzoyl-C 100.0 1.6E-51 3.5E-56 410.9 27.5 280 12-332 233-543 (546)
64 PLN02874 3-hydroxyisobutyryl-C 100.0 1.2E-51 2.6E-56 398.7 25.3 248 45-333 18-339 (379)
65 PRK08184 benzoyl-CoA-dihydrodi 100.0 3.4E-51 7.3E-56 409.8 28.0 280 12-332 237-547 (550)
66 PRK07112 polyketide biosynthes 100.0 5E-51 1.1E-55 375.7 26.6 242 45-332 11-254 (255)
67 PRK06190 enoyl-CoA hydratase; 100.0 5.3E-50 1.2E-54 369.2 27.3 243 45-329 11-256 (258)
68 PRK07110 polyketide biosynthes 100.0 4.3E-50 9.2E-55 368.3 26.0 237 43-322 10-246 (249)
69 PRK05869 enoyl-CoA hydratase; 100.0 1.5E-48 3.2E-53 352.1 22.3 213 35-253 3-217 (222)
70 PLN02157 3-hydroxyisobutyryl-C 100.0 2.4E-48 5.2E-53 375.9 25.2 243 45-330 44-293 (401)
71 KOG1681|consensus 100.0 2E-48 4.4E-53 338.4 15.0 264 30-332 14-291 (292)
72 PRK11730 fadB multifunctional 100.0 9.6E-47 2.1E-51 390.8 26.9 266 40-327 9-298 (715)
73 PRK08290 enoyl-CoA hydratase; 100.0 5.9E-46 1.3E-50 347.5 25.0 229 45-314 11-262 (288)
74 PRK08788 enoyl-CoA hydratase; 100.0 1.5E-45 3.4E-50 343.4 27.5 256 26-324 7-275 (287)
75 PRK11154 fadJ multifunctional 100.0 1.2E-45 2.6E-50 382.5 27.3 249 39-326 7-294 (708)
76 PLN02851 3-hydroxyisobutyryl-C 100.0 7.8E-45 1.7E-49 351.4 27.6 281 45-332 49-371 (407)
77 PRK06213 enoyl-CoA hydratase; 100.0 2.2E-45 4.7E-50 333.2 22.3 205 45-261 10-215 (229)
78 PRK08272 enoyl-CoA hydratase; 100.0 3.7E-45 7.9E-50 344.6 23.7 212 35-260 10-246 (302)
79 PLN02988 3-hydroxyisobutyryl-C 100.0 1E-44 2.2E-49 349.5 25.5 278 45-332 16-338 (381)
80 TIGR02440 FadJ fatty oxidation 100.0 1.2E-44 2.5E-49 374.4 26.1 244 42-324 5-287 (699)
81 TIGR03200 dearomat_oah 6-oxocy 100.0 1.2E-43 2.6E-48 334.7 23.5 205 45-253 33-256 (360)
82 PLN02267 enoyl-CoA hydratase/i 100.0 6.3E-43 1.4E-47 318.8 23.8 205 44-253 6-217 (239)
83 TIGR02437 FadB fatty oxidation 100.0 8.3E-43 1.8E-47 360.9 25.7 267 39-327 8-298 (714)
84 COG0447 MenB Dihydroxynaphthoi 100.0 1E-43 2.3E-48 306.9 11.0 256 33-331 16-276 (282)
85 KOG0016|consensus 100.0 1.7E-41 3.7E-46 301.4 21.5 245 42-326 11-263 (266)
86 TIGR02441 fa_ox_alpha_mit fatt 100.0 9.2E-41 2E-45 346.4 26.0 263 45-325 20-320 (737)
87 KOG1682|consensus 100.0 3.9E-41 8.4E-46 288.4 18.0 248 44-332 38-286 (287)
88 cd06558 crotonase-like Crotona 100.0 8.8E-40 1.9E-44 288.6 19.5 188 44-236 5-194 (195)
89 TIGR03222 benzo_boxC benzoyl-C 100.0 1.7E-39 3.7E-44 324.6 22.7 208 28-242 4-231 (546)
90 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.7E-38 3.6E-43 318.4 22.5 205 32-243 12-236 (550)
91 KOG1684|consensus 100.0 6.7E-37 1.5E-41 282.4 18.5 253 42-332 42-367 (401)
92 cd07014 S49_SppA Signal peptid 99.8 1.1E-19 2.4E-24 158.5 12.6 138 65-219 22-169 (177)
93 cd07020 Clp_protease_NfeD_1 No 99.8 2.4E-19 5.2E-24 157.7 14.3 145 49-219 2-165 (187)
94 cd07019 S49_SppA_1 Signal pept 99.7 1.3E-16 2.9E-21 142.9 13.5 151 47-218 1-202 (211)
95 TIGR00705 SppA_67K signal pept 99.6 2.7E-15 5.8E-20 152.8 11.5 176 44-246 306-531 (584)
96 cd07022 S49_Sppa_36K_type Sign 99.6 1.8E-14 3.9E-19 129.4 13.8 97 54-168 13-110 (214)
97 cd07023 S49_Sppa_N_C Signal pe 99.6 1.7E-14 3.8E-19 128.9 12.7 100 48-166 2-101 (208)
98 cd00394 Clp_protease_like Case 99.6 2.8E-14 6E-19 122.3 12.6 135 62-216 8-161 (161)
99 cd07016 S14_ClpP_1 Caseinolyti 99.5 7.2E-14 1.6E-18 119.8 11.5 129 65-216 15-160 (160)
100 TIGR00706 SppA_dom signal pept 99.5 2E-13 4.3E-18 122.0 13.7 144 48-218 2-194 (207)
101 cd07021 Clp_protease_NfeD_like 99.4 8.5E-12 1.8E-16 108.8 12.6 146 49-227 2-176 (178)
102 cd07018 S49_SppA_67K_type Sign 99.4 4.2E-12 9.1E-17 114.7 11.0 89 62-168 26-114 (222)
103 KOG1683|consensus 99.1 1.1E-11 2.5E-16 116.4 -0.6 184 45-232 64-251 (380)
104 PRK10949 protease 4; Provision 99.0 1.4E-08 3E-13 104.1 15.4 153 45-218 325-528 (618)
105 cd07015 Clp_protease_NfeD Nodu 98.9 4.3E-08 9.3E-13 84.9 15.4 150 49-227 2-170 (172)
106 cd07013 S14_ClpP Caseinolytic 98.8 7.5E-08 1.6E-12 82.8 11.9 135 62-216 9-162 (162)
107 PRK00277 clpP ATP-dependent Cl 98.6 3E-07 6.5E-12 81.7 11.6 134 61-219 39-196 (200)
108 PRK11778 putative inner membra 98.6 6.2E-07 1.3E-11 85.1 13.8 150 45-219 89-286 (330)
109 PRK12319 acetyl-CoA carboxylas 98.6 7.9E-06 1.7E-10 75.1 19.7 167 59-247 76-247 (256)
110 PRK12553 ATP-dependent Clp pro 98.5 1.4E-06 3E-11 77.9 12.9 134 62-219 44-202 (207)
111 CHL00198 accA acetyl-CoA carbo 98.5 1.4E-05 2.9E-10 75.4 19.8 167 59-247 132-307 (322)
112 cd07017 S14_ClpP_2 Caseinolyti 98.5 9.3E-07 2E-11 76.6 11.3 135 62-216 18-171 (171)
113 COG0616 SppA Periplasmic serin 98.5 9.4E-07 2E-11 84.0 11.0 150 47-218 60-261 (317)
114 PLN03230 acetyl-coenzyme A car 98.4 4.5E-05 9.8E-10 73.8 21.2 168 60-249 200-376 (431)
115 PRK05724 acetyl-CoA carboxylas 98.4 3.4E-05 7.4E-10 72.8 19.9 167 59-247 129-304 (319)
116 TIGR00513 accA acetyl-CoA carb 98.4 3E-05 6.6E-10 73.0 19.5 166 59-247 129-304 (316)
117 PRK14512 ATP-dependent Clp pro 98.4 4.6E-06 1E-10 73.9 12.6 136 62-219 32-188 (197)
118 PLN03229 acetyl-coenzyme A car 98.4 6.5E-05 1.4E-09 77.1 21.2 169 59-249 220-397 (762)
119 PF00574 CLP_protease: Clp pro 98.4 2.4E-06 5.1E-11 74.7 9.4 136 62-219 25-181 (182)
120 CHL00028 clpP ATP-dependent Cl 98.3 2.3E-05 5.1E-10 69.6 13.6 136 62-219 39-196 (200)
121 TIGR00493 clpP ATP-dependent C 98.2 3.2E-05 7E-10 68.3 12.9 135 62-218 35-190 (191)
122 PF01343 Peptidase_S49: Peptid 98.2 2.1E-06 4.6E-11 73.1 4.4 98 127-232 2-149 (154)
123 PF01972 SDH_sah: Serine dehyd 98.1 6.9E-05 1.5E-09 68.7 13.9 98 59-179 69-166 (285)
124 TIGR03133 malonate_beta malona 98.1 0.00024 5.3E-09 65.8 16.8 150 47-219 60-217 (274)
125 TIGR00705 SppA_67K signal pept 98.1 0.00011 2.4E-09 75.5 15.9 84 66-166 77-160 (584)
126 PRK12551 ATP-dependent Clp pro 98.0 8.4E-05 1.8E-09 65.8 11.9 136 62-219 34-190 (196)
127 PRK14514 ATP-dependent Clp pro 98.0 9.8E-05 2.1E-09 66.4 12.0 135 62-219 63-219 (221)
128 TIGR03134 malonate_gamma malon 98.0 0.00079 1.7E-08 61.3 17.8 154 45-220 30-190 (238)
129 PRK14513 ATP-dependent Clp pro 97.9 0.00017 3.7E-09 64.0 12.2 135 61-219 35-192 (201)
130 COG1030 NfeD Membrane-bound se 97.9 0.00026 5.7E-09 68.9 14.2 149 45-219 25-188 (436)
131 PF13766 ECH_C: 2-enoyl-CoA Hy 97.9 7.6E-05 1.7E-09 60.7 8.2 68 230-332 33-102 (118)
132 PRK07189 malonate decarboxylas 97.9 0.00055 1.2E-08 64.3 14.9 150 47-219 69-226 (301)
133 PRK05654 acetyl-CoA carboxylas 97.8 0.0019 4.1E-08 60.7 18.1 160 45-239 119-282 (292)
134 PRK10949 protease 4; Provision 97.8 0.00047 1E-08 71.1 14.1 85 65-166 95-179 (618)
135 TIGR00515 accD acetyl-CoA carb 97.7 0.0031 6.7E-08 59.0 16.9 157 45-236 118-278 (285)
136 PRK12552 ATP-dependent Clp pro 97.4 0.003 6.6E-08 56.8 12.9 144 61-219 48-214 (222)
137 CHL00174 accD acetyl-CoA carbo 97.4 0.019 4E-07 53.9 18.4 155 47-234 134-290 (296)
138 TIGR01117 mmdA methylmalonyl-C 97.4 0.01 2.2E-07 60.2 18.0 151 50-219 318-481 (512)
139 PF01039 Carboxyl_trans: Carbo 97.4 0.0048 1E-07 62.3 14.8 139 48-219 59-205 (493)
140 COG0740 ClpP Protease subunit 97.2 0.0058 1.3E-07 53.9 11.9 97 122-219 76-192 (200)
141 TIGR01117 mmdA methylmalonyl-C 97.1 0.017 3.6E-07 58.6 15.5 152 48-237 84-243 (512)
142 COG0825 AccA Acetyl-CoA carbox 97.1 0.0078 1.7E-07 55.6 11.7 135 63-219 132-266 (317)
143 PLN02820 3-methylcrotonyl-CoA 97.0 0.05 1.1E-06 55.8 17.4 155 48-236 131-293 (569)
144 PLN02157 3-hydroxyisobutyryl-C 96.5 0.0094 2E-07 58.5 8.0 68 230-332 294-366 (401)
145 PF01039 Carboxyl_trans: Carbo 95.3 0.1 2.2E-06 52.8 9.8 156 45-219 292-464 (493)
146 PLN02820 3-methylcrotonyl-CoA 95.2 0.68 1.5E-05 47.6 15.2 141 60-219 380-540 (569)
147 COG0777 AccD Acetyl-CoA carbox 95.1 0.47 1E-05 43.8 12.1 158 47-239 123-283 (294)
148 COG4799 Acetyl-CoA carboxylase 94.1 0.23 4.9E-06 50.1 8.4 102 48-162 93-194 (526)
149 KOG0840|consensus 93.2 0.87 1.9E-05 41.6 9.8 132 62-219 101-257 (275)
150 COG4799 Acetyl-CoA carboxylase 90.5 1.5 3.3E-05 44.4 9.0 152 48-219 326-494 (526)
151 PF02601 Exonuc_VII_L: Exonucl 76.8 6.7 0.00015 37.1 6.4 79 65-162 55-136 (319)
152 COG0074 SucD Succinyl-CoA synt 73.8 11 0.00023 35.3 6.5 73 45-143 145-240 (293)
153 TIGR00237 xseA exodeoxyribonuc 72.9 8.4 0.00018 38.3 6.1 80 64-162 169-248 (432)
154 PTZ00187 succinyl-CoA syntheta 71.4 12 0.00026 35.7 6.5 53 70-143 212-264 (317)
155 COG1570 XseA Exonuclease VII, 69.2 11 0.00023 37.5 5.8 77 65-161 176-253 (440)
156 PF13607 Succ_CoA_lig: Succiny 68.8 18 0.00039 30.0 6.3 52 69-142 41-92 (138)
157 smart00250 PLEC Plectin repeat 63.9 5.8 0.00013 25.1 1.9 18 198-215 18-35 (38)
158 PLN02522 ATP citrate (pro-S)-l 60.5 22 0.00048 37.0 6.4 53 69-143 209-262 (608)
159 PRK00286 xseA exodeoxyribonucl 59.3 21 0.00045 35.4 5.9 79 64-162 175-253 (438)
160 COG3660 Predicted nucleoside-d 56.7 1.4E+02 0.003 28.0 10.1 121 47-169 128-261 (329)
161 PF00681 Plectin: Plectin repe 50.5 5.2 0.00011 26.4 -0.0 19 198-216 18-36 (45)
162 PF00549 Ligase_CoA: CoA-ligas 49.8 43 0.00093 28.4 5.4 62 69-144 60-121 (153)
163 PRK00964 tetrahydromethanopter 43.1 47 0.001 29.9 4.8 62 38-99 17-88 (225)
164 COG0793 Prc Periplasmic protea 42.2 15 0.00032 36.4 1.7 98 48-152 205-308 (406)
165 TIGR02717 AcCoA-syn-alpha acet 41.7 39 0.00085 33.7 4.7 84 68-174 189-272 (447)
166 TIGR01111 mtrA N5-methyltetrah 41.6 78 0.0017 28.6 5.9 65 38-102 17-91 (238)
167 PLN00125 Succinyl-CoA ligase [ 40.6 72 0.0016 30.2 6.0 53 69-142 192-244 (300)
168 KOG1255|consensus 40.4 85 0.0018 28.9 6.0 56 69-142 218-273 (329)
169 PF06258 Mito_fiss_Elm1: Mitoc 39.3 2.7E+02 0.0058 26.4 9.7 132 31-170 95-246 (311)
170 TIGR01019 sucCoAalpha succinyl 39.2 72 0.0016 30.0 5.7 23 69-91 185-207 (286)
171 KOG0540|consensus 38.8 1.2E+02 0.0026 30.4 7.2 104 52-167 354-461 (536)
172 PRK13505 formate--tetrahydrofo 36.0 71 0.0015 32.8 5.4 72 80-152 322-393 (557)
173 smart00870 Asparaginase Aspara 33.5 1.7E+02 0.0036 27.9 7.3 31 60-90 55-85 (323)
174 PRK14053 methyltransferase; Pr 33.3 77 0.0017 27.7 4.4 65 38-102 14-84 (194)
175 PF06833 MdcE: Malonate decarb 31.3 4.1E+02 0.0088 24.2 16.0 141 59-219 40-187 (234)
176 PRK05678 succinyl-CoA syntheta 31.2 1.3E+02 0.0027 28.4 6.0 23 69-91 187-209 (291)
177 PF12268 DUF3612: Protein of u 28.9 36 0.00078 28.7 1.7 23 82-105 79-101 (178)
178 COG0252 AnsB L-asparaginase/ar 28.1 3.3E+02 0.0071 26.4 8.4 38 52-91 72-109 (351)
179 PF04208 MtrA: Tetrahydrometha 27.1 92 0.002 27.0 3.9 57 38-94 14-79 (176)
180 PF09425 CCT_2: Divergent CCT 26.9 24 0.00051 20.9 0.2 15 316-330 5-19 (27)
181 PRK06091 membrane protein FdrA 26.9 1.6E+02 0.0035 30.3 6.3 53 69-143 239-291 (555)
182 TIGR00520 asnASE_II L-asparagi 24.3 4.5E+02 0.0097 25.4 8.6 43 48-91 72-114 (349)
183 PLN03037 lipase class 3 family 22.5 76 0.0017 32.4 3.0 42 116-157 300-341 (525)
184 PRK04183 glutamyl-tRNA(Gln) am 22.1 2.4E+02 0.0053 28.0 6.4 31 60-91 131-162 (419)
185 PF01990 ATP-synt_F: ATP synth 21.5 2E+02 0.0043 21.8 4.6 52 67-142 27-79 (95)
186 TIGR00519 asnASE_I L-asparagin 21.3 2.7E+02 0.0059 26.7 6.4 30 60-91 57-87 (336)
187 PF01268 FTHFS: Formate--tetra 20.7 1.4E+02 0.003 30.8 4.4 154 78-253 319-477 (557)
188 PRK02228 V-type ATP synthase s 20.4 4.1E+02 0.0089 20.5 6.6 49 68-140 30-79 (100)
189 TIGR00555 panK_eukar pantothen 20.3 6.9E+02 0.015 23.3 8.7 44 42-93 17-60 (279)
190 PF01740 STAS: STAS domain; I 20.0 2.5E+02 0.0055 21.6 5.1 43 44-91 6-56 (117)
No 1
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=2.3e-57 Score=417.01 Aligned_cols=251 Identities=48% Similarity=0.844 Sum_probs=233.5
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
++++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||||.++++||+|.|++++..........+...++.+
T Consensus 1 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T PLN02600 1 PDSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRST 80 (251)
T ss_pred CCCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999867899999999987654333344556667788
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|+++|++++
T Consensus 81 ~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~ 160 (251)
T PLN02600 81 FSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIG 160 (251)
T ss_pred HHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
++||+++||||+|+|+ +++++++.++|++|+..+|.+++.+|++++ .....
T Consensus 161 a~eA~~~Glv~~vv~~----~~~~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~---------------------- 211 (251)
T PLN02600 161 AREAASMGLVNYCVPA----GEAYEKALELAQEINQKGPLAIKMAKKAIN---EGSEV---------------------- 211 (251)
T ss_pred HHHHHHcCCCcEeeCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHccC----------------------
Confidence 9999999999999995 789999999999999999999999999998 65544
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++.++.|...+..++.++|++||+++|+|||+|+|+++
T Consensus 212 ----------~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~~~~ 251 (251)
T PLN02600 212 ----------DMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVYTGK 251 (251)
T ss_pred ----------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999875
No 2
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-56 Score=412.87 Aligned_cols=251 Identities=49% Similarity=0.793 Sum_probs=233.7
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||+|.++++||+|.|++++.....+....+...++.+
T Consensus 10 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 89 (260)
T PRK07657 10 VTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTT 89 (260)
T ss_pred ccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999944699999999987654333444555667888
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++
T Consensus 90 ~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~ 169 (260)
T PRK07657 90 MEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRIS 169 (260)
T ss_pred HHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
++||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 170 a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~---------------------- 220 (260)
T PRK07657 170 AQEAKEIGLVEFVVPA----HLLEEKAIEIAEKIASNGPIAVRQAKEAIS---NGIQV---------------------- 220 (260)
T ss_pred HHHHHHcCCCCeecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccC----------------------
Confidence 9999999999999995 789999999999999999999999999999 66554
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++++..|...+..++.++|++||+++|++||+|+|+|+
T Consensus 221 ----------~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~~~~ 260 (260)
T PRK07657 221 ----------DLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMYKGE 260 (260)
T ss_pred ----------CHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999985
No 3
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=2.9e-56 Score=414.82 Aligned_cols=261 Identities=29% Similarity=0.456 Sum_probs=234.3
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC----
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN---- 109 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~---- 109 (333)
|..+.+.....+++|++|+||||+++|++|.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++....
T Consensus 4 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~-g~~FcaG~Dl~~~~~~~~~~~ 82 (275)
T PLN02664 4 YKTLEIIQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGA-GDHFCSGIDLKTLNSISEQSS 82 (275)
T ss_pred ccceEEEEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECC-CCceeeCcChHHhhhcccccc
Confidence 3334444455689999999999999999999999999999999999999999999998 89999999999875321
Q ss_pred -------HHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhh
Q psy503 110 -------EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQR 182 (333)
Q Consensus 110 -------~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~ 182 (333)
.+....+...+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 162 (275)
T PLN02664 83 SGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQR 162 (275)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHH
Confidence 0112233445667888999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCccc
Q psy503 183 LPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYR 262 (333)
Q Consensus 183 L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~ 262 (333)
|++++|..++++++++|++++|+||+++||||+|||+ .+++.+.+.+++++|+..+|.+++.+|+.++ .....
T Consensus 163 l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~---~~~l~~~~~~~a~~ia~~~p~a~~~~K~~l~---~~~~~- 235 (275)
T PLN02664 163 LPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGS---KEDLDEGVRLIAEGIAAKSPLAVTGTKAVLL---RSREL- 235 (275)
T ss_pred HHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCC---hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC-
Confidence 9999999999999999999999999999999999985 3678889999999999999999999999998 65554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 263 DGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++.++++.|...+..++.++|++||+++|++||+|.|+++
T Consensus 236 -------------------------------~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~~~~ 275 (275)
T PLN02664 236 -------------------------------SVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVFAKL 275 (275)
T ss_pred -------------------------------CHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCCCCC
Confidence 7899999999999999999999999999999999999875
No 4
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-56 Score=412.86 Aligned_cols=257 Identities=30% Similarity=0.465 Sum_probs=233.9
Q ss_pred ceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc--CHHH
Q psy503 35 TQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL--NEDQ 112 (333)
Q Consensus 35 ~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~--~~~~ 112 (333)
+.+.++. +++|++|+||||+++|++|.+|+.+|.++|+.++.|+++++|||+|.++++||+|.|++++... ..+.
T Consensus 11 ~~v~~~~---~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 87 (269)
T PRK06127 11 GKLLAEK---TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEA 87 (269)
T ss_pred CceEEEE---ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHH
Confidence 3444443 6899999999999999999999999999999999999999999999955899999999987542 1222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHH
Q psy503 113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192 (333)
Q Consensus 113 ~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a 192 (333)
...+...++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++
T Consensus 88 ~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 167 (269)
T PRK06127 88 VAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAA 167 (269)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHH
Confidence 33445556778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCC
Q psy503 193 KELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272 (333)
Q Consensus 193 ~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 272 (333)
++++++|++++|+||+++||||+|||+ +++.+++.++|++++..+|.+++.+|+.++ .....
T Consensus 168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~----------- 229 (269)
T PRK06127 168 KDLFYTARRFDAAEALRIGLVHRVTAA----DDLETALADYAATIAGNAPLTLRAAKRAIA---ELLKD----------- 229 (269)
T ss_pred HHHHHcCCCCCHHHHHHcCCCCEeeCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccC-----------
Confidence 999999999999999999999999995 789999999999999999999999999998 65554
Q ss_pred CCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 273 DGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++.++.|...+..++.++|.+||+++|++||+|+|+++
T Consensus 230 ---------------------~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~~~~ 269 (269)
T PRK06127 230 ---------------------EPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVFKGR 269 (269)
T ss_pred ---------------------CHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCCCCC
Confidence 7889999999999999999999999999999999999875
No 5
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.1e-56 Score=413.30 Aligned_cols=250 Identities=28% Similarity=0.454 Sum_probs=230.2
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc-----------CHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL-----------NEDQ 112 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~-----------~~~~ 112 (333)
.+++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||+|. |++||+|.|++++... ....
T Consensus 12 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 90 (272)
T PRK06142 12 LADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGS-GKHFSYGIDLPAMAGVFGQLGKDGLARPRTD 90 (272)
T ss_pred ecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhhhcccccccccccchHH
Confidence 378999999999999999999999999999999999999999999998 7899999999987431 0112
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHH
Q psy503 113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192 (333)
Q Consensus 113 ~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a 192 (333)
...+...+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|++++|..++
T Consensus 91 ~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a 170 (272)
T PRK06142 91 LRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHL 170 (272)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHHH
Confidence 33344566788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCC
Q psy503 193 KELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272 (333)
Q Consensus 193 ~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 272 (333)
++++++|++++|+||+++||||+|+|+ .+++.+++.+++++|+..+|.+++.+|+.++ +....
T Consensus 171 ~~l~l~g~~~~a~eA~~~GLv~~vv~~---~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~---~~~~~----------- 233 (272)
T PRK06142 171 RELALTGRDIDAAEAEKIGLVNRVYDD---ADALLAAAHATAREIAAKSPLAVRGTKEVLD---YMRDH----------- 233 (272)
T ss_pred HHHHHhCCCcCHHHHHHcCCccEecCC---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC-----------
Confidence 999999999999999999999999995 4779999999999999999999999999999 66554
Q ss_pred CCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 273 DGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
++.+.++.|...+..++.++|++||+++|++||+|+|+|
T Consensus 234 ---------------------~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~~~ 272 (272)
T PRK06142 234 ---------------------RVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEFTG 272 (272)
T ss_pred ---------------------CHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCCCC
Confidence 789999999999999999999999999999999999986
No 6
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.4e-56 Score=409.48 Aligned_cols=249 Identities=31% Similarity=0.456 Sum_probs=229.6
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++||||||++ |++|.+|+.+|.++++.++.|+++++|||+|.|+++||+|.|++++..........+...+..+
T Consensus 9 ~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (258)
T PRK09076 9 IDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEA 87 (258)
T ss_pred EECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHH
Confidence 378999999999985 9999999999999999999999999999999955899999999987543332233445556778
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++
T Consensus 88 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~ 167 (258)
T PRK09076 88 FEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVD 167 (258)
T ss_pred HHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|++++ .....
T Consensus 168 a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~---------------------- 218 (258)
T PRK09076 168 AATALRIGLVEEVVEK----GEAREAALALAQKVANQSPSAVAACKTLIQ---AARNG---------------------- 218 (258)
T ss_pred HHHHHHCCCCceecCc----hhHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC----------------------
Confidence 9999999999999996 778999999999999999999999999998 65544
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
++++.++.|...+..++.++|++||+++|++||+|+|++
T Consensus 219 ----------~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~~ 257 (258)
T PRK09076 219 ----------PRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQWKN 257 (258)
T ss_pred ----------CHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCC
Confidence 789999999999999999999999999999999999986
No 7
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.1e-56 Score=408.33 Aligned_cols=246 Identities=30% Similarity=0.462 Sum_probs=227.3
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||++.|++|.+|+.+|.++++.++ +++++|||||. |++||+|.|++++..........+...++.++
T Consensus 9 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK08150 9 DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGE-GDHFCAGLDLSELRERDAGEGMHHSRRWHRVF 85 (255)
T ss_pred eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHHHHH
Confidence 6899999999999999999999999999999997 78999999998 88999999999876533222233445667788
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++|+|
T Consensus 86 ~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a 165 (255)
T PRK08150 86 DKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDA 165 (255)
T ss_pred HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+|||+ +++.+++.++|++|+..+|.+++.+|++++ .....
T Consensus 166 ~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~----------------------- 215 (255)
T PRK08150 166 QEGERLGLAQYLVPA----GEALDKAMELARRIAQNAPLTNFAVLNALP---RIADM----------------------- 215 (255)
T ss_pred HHHHHcCCccEeeCc----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccC-----------------------
Confidence 999999999999996 779999999999999999999999999998 65554
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
+++++++.|...+..++.++|++||+++|++||+|+|++
T Consensus 216 ---------~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~~ 254 (255)
T PRK08150 216 ---------SADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVKP 254 (255)
T ss_pred ---------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence 788999999998999999999999999999999999986
No 8
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.1e-56 Score=408.11 Aligned_cols=247 Identities=35% Similarity=0.534 Sum_probs=228.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++...... ..+...+..++
T Consensus 11 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~--~~~~~~~~~~~ 87 (257)
T PRK05862 11 RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGS-EKAFAAGADIKEMADLSFM--DVYKGDYITNW 87 (257)
T ss_pred eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECC-CCceECCcChHhHhccchh--HHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999998 8899999999987643221 12223345577
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
.+|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|+++|++++|
T Consensus 88 ~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a 167 (257)
T PRK05862 88 EKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDA 167 (257)
T ss_pred HHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+|+|+ +++.+++.+++++++..+|.+++.+|++++ .....
T Consensus 168 ~eA~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~----------------------- 217 (257)
T PRK05862 168 AEAERAGLVSRVVPA----DKLLDEALAAATTIASFSLPAVMMAKEAVN---RAYET----------------------- 217 (257)
T ss_pred HHHHHcCCCCEeeCH----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC-----------------------
Confidence 999999999999995 789999999999999999999999999999 66554
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++.+++..|.+.+..++.++|++||+++|++||+|.|+|+
T Consensus 218 ---------~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~~~~ 257 (257)
T PRK05862 218 ---------TLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVFKHR 257 (257)
T ss_pred ---------CHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCCCCC
Confidence 7899999999999999999999999999999999999885
No 9
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.6e-56 Score=408.60 Aligned_cols=248 Identities=35% Similarity=0.548 Sum_probs=229.0
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC----HHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQIRSFVST 119 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~----~~~~~~~~~~ 119 (333)
.+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.++++||+|.|++++.... ......+...
T Consensus 9 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (260)
T PRK05980 9 IRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRR 88 (260)
T ss_pred EECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHH
Confidence 378999999999999999999999999999999999999999999999447999999999875421 1123345556
Q ss_pred HHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcC
Q psy503 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTG 199 (333)
Q Consensus 120 ~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG 199 (333)
++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|
T Consensus 89 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g 168 (260)
T PRK05980 89 GQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTG 168 (260)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcC
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy503 200 RLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKG 279 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (333)
++++|+||+++||||+|+|+ +++.+++.+++++++..+|.+++.+|++++ .....
T Consensus 169 ~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~~~---~~~~~------------------ 223 (260)
T PRK05980 169 DAFSAERALEIGLVNAVVPH----EELLPAARALARRIIRHSPVAVAAILTAVT---RGLNL------------------ 223 (260)
T ss_pred CccCHHHHHHcCCCCcccCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC------------------
Confidence 99999999999999999995 779999999999999999999999999998 66554
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Q psy503 280 GESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330 (333)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~ 330 (333)
++.+++..|...+..++.++|++||+++|++||+|+|
T Consensus 224 --------------~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~ 260 (260)
T PRK05980 224 --------------SIAEGLLIESEQFARMAGSADLREGLAAWIERRRPAY 260 (260)
T ss_pred --------------CHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence 7899999999999999999999999999999999998
No 10
>KOG1680|consensus
Probab=100.00 E-value=5.7e-57 Score=403.76 Aligned_cols=261 Identities=36% Similarity=0.576 Sum_probs=239.1
Q ss_pred ccCccceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC
Q psy503 30 EGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN 109 (333)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~ 109 (333)
.+.++..+.+.+...+++|++|+||||+++|+++..++.+|.++|..++.|+.+.++||||. ++.||+|.|++++....
T Consensus 29 ~~~~~~~~~~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~-gksFcsG~Dl~e~~~~~ 107 (290)
T KOG1680|consen 29 TDQEFEPIKIELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGS-GKSFCSGADLKEMKKDE 107 (290)
T ss_pred hccccCcceeEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcC-CCccccccCHHHHhhcc
Confidence 44567777888888999999999999999999999999999999999999999999999999 89999999999987643
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCH
Q psy503 110 EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI 189 (333)
Q Consensus 110 ~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~ 189 (333)
..+. ....+.+.+..+...+||+||+|||+|+|||++|+++||+|||+++++|++|+.++|++|.+|++.+|+|.+|.
T Consensus 108 ~~~~--~~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~ 185 (290)
T KOG1680|consen 108 FQDV--SDGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGK 185 (290)
T ss_pred cccc--ccccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhCh
Confidence 2221 11223444555558999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCC
Q psy503 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHS 269 (333)
Q Consensus 190 ~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~ 269 (333)
++|+++++||++++|+||+++||||+|||. ++++.+|.+|+++|+++||.+++..|++++ .+.+.
T Consensus 186 s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~----~~~l~eAv~l~~~Ia~~~~~~v~~~K~svn---~~~e~-------- 250 (290)
T KOG1680|consen 186 SRALEMILTGRRLGAQEAKKIGLVNKVVPS----GDALGEAVKLAEQIAKNSPLVVRADKESVN---AAYET-------- 250 (290)
T ss_pred HHHHHHHHhcCcccHHHHHhCCceeEeecc----hhHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhhc--------
Confidence 999999999999999999999999999996 779999999999999999999999999999 77776
Q ss_pred CCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 270 PGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
++.+++..|...+...+.++|.+|||.+|.+||+|+|..
T Consensus 251 ------------------------~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~k 289 (290)
T KOG1680|consen 251 ------------------------TLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFSK 289 (290)
T ss_pred ------------------------cHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCccccc
Confidence 899999999999999999999999999999999999975
No 11
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=1.4e-55 Score=407.16 Aligned_cols=250 Identities=38% Similarity=0.585 Sum_probs=232.1
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|+++||+|.|++++..........+....+.++
T Consensus 11 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (260)
T PRK05809 11 EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVF 90 (260)
T ss_pred eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999438999999999876544333334445567788
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++|
T Consensus 91 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a 170 (260)
T PRK05809 91 RKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINA 170 (260)
T ss_pred HHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+|+|+ +++.+++.+++++++..+|.+++.+|+.++ .....
T Consensus 171 ~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~----------------------- 220 (260)
T PRK05809 171 EEALRIGLVNKVVEP----EKLMEEAKALANKIAANAPIAVKLCKDAIN---RGMQV----------------------- 220 (260)
T ss_pred HHHHHcCCCCcccCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC-----------------------
Confidence 999999999999995 789999999999999999999999999999 66555
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|.+.+..++.++|++||+++|++||+|+|+++
T Consensus 221 ---------~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~~~~ 260 (260)
T PRK05809 221 ---------DIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNFKNK 260 (260)
T ss_pred ---------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999985
No 12
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=1.3e-55 Score=406.55 Aligned_cols=249 Identities=29% Similarity=0.460 Sum_probs=227.4
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC--HHH-HHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN--EDQ-IRSFVSTL 120 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~--~~~-~~~~~~~~ 120 (333)
.+++|++||||||++.|++|.+|+.+|.++|+.++.|+ +++|||||. |++||+|.|++++.... ... ...+...+
T Consensus 5 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 82 (256)
T TIGR02280 5 LEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGA-GRGFCAGQDLSERNPTPGGAPDLGRTIETFY 82 (256)
T ss_pred EECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECC-CCCcccCcCHHHHhhccccchhHHHHHHHHH
Confidence 47899999999999999999999999999999999998 999999998 78999999999875421 111 11222334
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++|+++|+
T Consensus 83 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~ 162 (256)
T TIGR02280 83 NPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGE 162 (256)
T ss_pred HHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCC
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (333)
+++++||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 163 ~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~~~~~~K~~l~---~~~~~------------------- 216 (256)
T TIGR02280 163 KLDARTAASWGLIWQVVDD----AALMDEAQALAVHLAAQPTRGLALTKRAIQ---AAATN------------------- 216 (256)
T ss_pred CCCHHHHHHcCCcceeeCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhcC-------------------
Confidence 9999999999999999996 789999999999999999999999999998 66554
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++.+++..|...+..++.++|++||+++|++||+|+|+++
T Consensus 217 -------------~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 256 (256)
T TIGR02280 217 -------------SLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQFTGK 256 (256)
T ss_pred -------------CHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCCCCC
Confidence 7899999999999999999999999999999999999874
No 13
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.8e-56 Score=407.13 Aligned_cols=250 Identities=25% Similarity=0.370 Sum_probs=225.1
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHH-
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY- 122 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~- 122 (333)
.+++|++||||||+++|++|.+|+.+|.+++++++.|+++++|||+|. |++||+|.|++++.....+....+.....+
T Consensus 5 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 83 (255)
T PRK06563 5 RRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAH-GEHFTAGLDLADVAPKLAAGGFPFPEGGIDP 83 (255)
T ss_pred EECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECC-CCCCcCCcCHHHHhhccccchhhhhhhhhHH
Confidence 368999999999999999999999999999999999999999999998 889999999998754211111112222222
Q ss_pred HHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC
Q psy503 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i 202 (333)
+...+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..++++++++|+++
T Consensus 84 ~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~ 163 (255)
T PRK06563 84 WGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEF 163 (255)
T ss_pred HHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCc
Confidence 33357899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy503 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (333)
+|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 164 ~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~~~---~~~~~--------------------- 215 (255)
T PRK06563 164 DAQEALRLGLVQEVVPP----GEQLERAIELAERIARAAPLGVQATLASAR---AAVRE--------------------- 215 (255)
T ss_pred CHHHHHHcCCCcEeeCH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhhcC---------------------
Confidence 99999999999999995 789999999999999999999999999998 65554
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++.++++.|...+..++.++|++||+++|++||+|.|+++
T Consensus 216 -----------~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 255 (255)
T PRK06563 216 -----------GEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARFKGR 255 (255)
T ss_pred -----------CHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999875
No 14
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=2e-55 Score=405.10 Aligned_cols=248 Identities=34% Similarity=0.566 Sum_probs=229.1
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++...... ..+......+
T Consensus 8 ~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~--~~~~~~~~~~ 84 (255)
T PRK09674 8 RQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGN-ARFFAAGADLNEMAEKDLA--ATLNDPRPQL 84 (255)
T ss_pred eECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECC-CCceecccChHhHhccchh--hhHHHHHHHH
Confidence 478999999999999999999999999999999999999999999998 8999999999987543211 1222344567
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++++++|+.++
T Consensus 85 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~ 164 (255)
T PRK09674 85 WQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESIT 164 (255)
T ss_pred HHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 165 a~eA~~~Glv~~vv~~----~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~---------------------- 215 (255)
T PRK09674 165 AQQAQQAGLVSEVFPP----ELTLERALQLASKIARHSPLALRAAKQALR---QSQEV---------------------- 215 (255)
T ss_pred HHHHHHcCCCcEecCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC----------------------
Confidence 9999999999999995 779999999999999999999999999998 66554
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++.+.++.|...+..++.++|++||+++|++||+|+|+++
T Consensus 216 ----------~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~~~~ 255 (255)
T PRK09674 216 ----------DLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDFKGR 255 (255)
T ss_pred ----------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCCC
Confidence 7899999999999999999999999999999999999875
No 15
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.9e-55 Score=404.65 Aligned_cols=248 Identities=27% Similarity=0.447 Sum_probs=226.7
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC---HHHH-HHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN---EDQI-RSFVSTL 120 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~---~~~~-~~~~~~~ 120 (333)
+++|++||||||+++|++|.+|+.+|.+++++++ |+++++|||+|. |++||+|.|++++.... .... ..+...+
T Consensus 11 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (262)
T PRK08140 11 EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGA-GRGFCAGQDLADRDVTPGGAMPDLGESIETFY 88 (262)
T ss_pred ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECC-CCCcccCcChHHHhccccccchhhHHHHHHHH
Confidence 6899999999999999999999999999999999 999999999998 78999999999874321 1111 1222234
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|+
T Consensus 89 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~ 168 (262)
T PRK08140 89 NPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGE 168 (262)
T ss_pred HHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCC
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (333)
+++|+||+++||||+|+|+ +++.+++.+++++|+..+|.++..+|+.++ .....
T Consensus 169 ~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~---~~~~~------------------- 222 (262)
T PRK08140 169 KLSAEQAEQWGLIWRVVDD----AALADEAQQLAAHLATQPTRGLALIKQAMN---ASATN------------------- 222 (262)
T ss_pred CcCHHHHHHcCCccEeeCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhhC-------------------
Confidence 9999999999999999995 679999999999999999999999999999 66554
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|++||+|.|+++
T Consensus 223 -------------~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~~~~ 262 (262)
T PRK08140 223 -------------TLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRFTGR 262 (262)
T ss_pred -------------CHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999875
No 16
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-55 Score=404.44 Aligned_cols=249 Identities=32% Similarity=0.546 Sum_probs=230.1
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH-HHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTLRY 122 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~-~~~~~~~~~~~~ 122 (333)
.+++|++||||||++ |++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++..... +....+....+.
T Consensus 8 ~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 85 (257)
T PRK07658 8 VEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGE-GRFFSAGADIKEFTSVTEAEQATELAQLGQV 85 (257)
T ss_pred eeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhccCchhhHHHHHHHHHH
Confidence 378999999999985 99999999999999999999999999999998 889999999998754322 223334456677
Q ss_pred HHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC
Q psy503 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i 202 (333)
++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|+++|+++
T Consensus 86 ~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~ 165 (257)
T PRK07658 86 TFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPI 165 (257)
T ss_pred HHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy503 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (333)
+++||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|++++ .....
T Consensus 166 ~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~--------------------- 217 (257)
T PRK07658 166 TGAEALKWGLVNGVFPE----ETLLDDAKKLAKKIAGKSPATTRAVLELLQ---TTKSS--------------------- 217 (257)
T ss_pred CHHHHHHcCCcCeecCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC---------------------
Confidence 99999999999999995 789999999999999999999999999998 66554
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|++||+|+|+++
T Consensus 218 -----------~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~~~ 257 (257)
T PRK07658 218 -----------SYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSFSGK 257 (257)
T ss_pred -----------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 7899999999999999999999999999999999999875
No 17
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.8e-55 Score=407.08 Aligned_cols=250 Identities=24% Similarity=0.421 Sum_probs=230.0
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc----CHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL----NEDQIRSFVST 119 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~----~~~~~~~~~~~ 119 (333)
.+++|++|+||||++.|++|.+|+.+|.++|++++.|+++++|||+|. |++||+|.|++++... .......+...
T Consensus 23 ~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~ 101 (277)
T PRK08258 23 VDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGA-GGNFCSGGDVHEIIGPLTKMDMPELLAFTRM 101 (277)
T ss_pred EECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCC-CCCcccccCHHHHhccccccChhHHHHHHHH
Confidence 378999999999999999999999999999999999999999999998 8899999999987431 12223344555
Q ss_pred HHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccC-ChhhhhhcccccCHHHHHHHHHc
Q psy503 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIP-GAGGTQRLPRIVGIPLAKELIYT 198 (333)
Q Consensus 120 ~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p-~~g~~~~L~r~iG~~~a~~lllt 198 (333)
+++++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|..++++++++
T Consensus 102 ~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~lt 181 (277)
T PRK08258 102 TGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYT 181 (277)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHc
Confidence 67888999999999999999999999999999999999999999999999999995 67889999999999999999999
Q ss_pred CCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCC
Q psy503 199 GRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSK 278 (333)
Q Consensus 199 G~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (333)
|++++|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 182 g~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~----------------- 237 (277)
T PRK08258 182 GRSMSAEEGERWGFFNRLVEP----EELLAEAQALARRLAAGPTFAHGMTKTMLH---QEWDM----------------- 237 (277)
T ss_pred CCCCCHHHHHHcCCCcEecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhccC-----------------
Confidence 999999999999999999995 779999999999999999999999999999 66554
Q ss_pred CCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 279 GGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++.++.|...+..++.++|++||+++|+|||+|+|+++
T Consensus 238 ---------------~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~~~ 277 (277)
T PRK08258 238 ---------------GLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVFEGD 277 (277)
T ss_pred ---------------CHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999875
No 18
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.6e-55 Score=404.62 Aligned_cols=248 Identities=33% Similarity=0.529 Sum_probs=229.5
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++..... ...+...++++
T Consensus 14 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~--~~~~~~~~~~~ 90 (261)
T PRK08138 14 PADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGG-EKVFAAGADIKEFATAGA--IEMYLRHTERY 90 (261)
T ss_pred ccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECC-CCCeeCCcCHHHHhccch--hHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999998 889999999998754321 22233456778
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++|+++|++++
T Consensus 91 ~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~ 170 (261)
T PRK08138 91 WEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVP 170 (261)
T ss_pred HHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
++||+++||||+|+|+ +++.+++.+++++++..+|.+++.+|++++ .....
T Consensus 171 a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~---------------------- 221 (261)
T PRK08138 171 APEALAIGLVSEVVED----EQTLPRALELAREIARMPPLALAQIKEVVL---AGADA---------------------- 221 (261)
T ss_pred HHHHHHCCCCcEecCc----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC----------------------
Confidence 9999999999999996 778999999999999999999999999998 66554
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++++..|.+.+..++.++|++||+++|++||+|+|+++
T Consensus 222 ----------~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~~~~ 261 (261)
T PRK08138 222 ----------PLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAYKGK 261 (261)
T ss_pred ----------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence 7889999999999999999999999999999999999874
No 19
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=5.8e-55 Score=404.21 Aligned_cols=249 Identities=30% Similarity=0.483 Sum_probs=228.7
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC-HHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-EDQIRSFVSTLRY 122 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~-~~~~~~~~~~~~~ 122 (333)
.+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++.... .+....+...+.+
T Consensus 17 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 95 (266)
T PRK08139 17 DRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAA-GKAFCAGHDLKEMRAARGLAYFRALFARCSR 95 (266)
T ss_pred eeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecC-CCcceeccCHHHHhcccchhHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999 78999999999875432 2223344556677
Q ss_pred HHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC
Q psy503 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i 202 (333)
++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ .++|++++|..++++++++|+++
T Consensus 96 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~~l~ltg~~~ 174 (266)
T PRK08139 96 VMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAMEMLLTGEFI 174 (266)
T ss_pred HHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHHHHHHcCCcc
Confidence 88899999999999999999999999999999999999999999999999998765 46799999999999999999999
Q ss_pred CHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy503 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (333)
+|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 175 ~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~--------------------- 226 (266)
T PRK08139 175 DAATAREWGLVNRVVPA----DALDAAVARLAAVIAAKSPAAVRIGKEAFY---RQAEM--------------------- 226 (266)
T ss_pred CHHHHHHcCCccEeeCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccC---------------------
Confidence 99999999999999995 789999999999999999999999999999 66555
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++.+..|...+..++.++|++||+++|++||+|+|+++
T Consensus 227 -----------~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 266 (266)
T PRK08139 227 -----------PLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEWRGR 266 (266)
T ss_pred -----------CHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999875
No 20
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-55 Score=405.21 Aligned_cols=249 Identities=30% Similarity=0.493 Sum_probs=224.6
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHH-HHH-H-H-HHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED-QIR-S-F-VST 119 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~-~~~-~-~-~~~ 119 (333)
.+++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++...... ... . + ...
T Consensus 11 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 89 (263)
T PRK07799 11 QRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGA-GGAFCAGMDLKAATKKPPGDSFKDGSYDPSR 89 (263)
T ss_pred EECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCccccccCHHHHhhccccchhhhhhhhhhH
Confidence 378999999999999999999999999999999999999999999998 7999999999987543211 111 1 1 122
Q ss_pred HHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcC
Q psy503 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTG 199 (333)
Q Consensus 120 ~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG 199 (333)
+..+ .++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|
T Consensus 90 ~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg 168 (263)
T PRK07799 90 IDAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTG 168 (263)
T ss_pred HHHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcC
Confidence 2223 357889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy503 200 RLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKG 279 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (333)
++++|+||+++||||+|||+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 169 ~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~~~~~~~~a~~~~K~~l~---~~~~~------------------ 223 (263)
T PRK07799 169 RHITAAEAKEIGLIGHVVPD----GQALDKALELAELINANGPLAVQAILRTIR---ETEGM------------------ 223 (263)
T ss_pred CCCCHHHHHHcCCccEecCc----chHHHHHHHHHHHHHhcChHHHHHHHHHHH---HhhcC------------------
Confidence 99999999999999999996 678999999999999999999999999999 65554
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 280 GESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++.++++.|.+.+..++.++|++||+++|++||+|+|+|+
T Consensus 224 --------------~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~~~~ 263 (263)
T PRK07799 224 --------------HENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNFQGR 263 (263)
T ss_pred --------------CHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCCCCC
Confidence 7899999999999999999999999999999999999985
No 21
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5e-55 Score=403.92 Aligned_cols=248 Identities=31% Similarity=0.473 Sum_probs=224.7
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---CHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVSTLR 121 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~ 121 (333)
+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||. |++||+|.|++++... ...........++
T Consensus 11 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (262)
T PRK05995 11 RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGA-GKAFCAGADLNWMKKMAGYSDDENRADARRLA 89 (262)
T ss_pred eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECC-CCccccCcCHHHHhhhcccCchhhhhHHHHHH
Confidence 68999999999999999999999999999999999999999999999 7899999999987432 1111122234567
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+. +|++++|..++++++++|++
T Consensus 90 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~a~~l~l~g~~ 168 (262)
T PRK05995 90 DMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGERAARRYFLTAER 168 (262)
T ss_pred HHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHHHHHHHHHcCCc
Confidence 78889999999999999999999999999999999999999999999999999988775 58899999999999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (333)
|+|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 169 ~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~-------------------- 221 (262)
T PRK05995 169 FDAAEALRLGLVHEVVPA----EALDAKVDELLAALVANSPQAVRAGKRLVR---DVAGR-------------------- 221 (262)
T ss_pred cCHHHHHHcCCCCeecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhcC--------------------
Confidence 999999999999999985 789999999999999999999999999998 65544
Q ss_pred CCCcccccccccCHHHH-HHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 282 SKGTENQNREFQGRYSG-MEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~-l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++.+. ++.|...+..++.++|++||+++|++||+|+|+|+
T Consensus 222 ------------~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~~~~ 262 (262)
T PRK05995 222 ------------PIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAWRGR 262 (262)
T ss_pred ------------ChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence 67777 88888888999999999999999999999999986
No 22
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5e-55 Score=404.80 Aligned_cols=249 Identities=34% Similarity=0.542 Sum_probs=227.8
Q ss_pred CCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC------HHHH-HHH
Q psy503 45 RPGIVELCMNRPQARNALNA-TLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN------EDQI-RSF 116 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~-~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~------~~~~-~~~ 116 (333)
+++|++||||||++.|++|. +|+.+|.++++.++.|+++++|||+|. |++||+|.|++++.... .... ..+
T Consensus 10 ~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (266)
T PRK09245 10 DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGA-GTAFSSGGNVKDMRARVGAFGGSPADIRQGY 88 (266)
T ss_pred ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCHHHHhhccccccccchhHHHHH
Confidence 68999999999999999995 999999999999999999999999998 89999999999875321 1111 223
Q ss_pred HHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHH
Q psy503 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELI 196 (333)
Q Consensus 117 ~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~ll 196 (333)
...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++
T Consensus 89 ~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~ 168 (266)
T PRK09245 89 RHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMA 168 (266)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHH
Confidence 33456788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCC
Q psy503 197 YTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQG 276 (333)
Q Consensus 197 ltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~ 276 (333)
++|++++|+||+++||||+|+|+ +++.+++.+++++|+..||.+++.+|++++ .....
T Consensus 169 l~g~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~--------------- 226 (266)
T PRK09245 169 FTGDAIDAATALEWGLVSRVVPA----DQLLPAARALAERIAANPPHALRLTKRLLR---EGQHA--------------- 226 (266)
T ss_pred HcCCCcCHHHHHHcCCcceecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC---------------
Confidence 99999999999999999999995 789999999999999999999999999999 65554
Q ss_pred CCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 277 SKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++.+..|...+..++.++|++||+++|++||+|.|+++
T Consensus 227 -----------------~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 266 (266)
T PRK09245 227 -----------------SLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVFTGR 266 (266)
T ss_pred -----------------CHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCCCCC
Confidence 7889999999999999999999999999999999999985
No 23
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.1e-55 Score=401.93 Aligned_cols=246 Identities=28% Similarity=0.471 Sum_probs=226.6
Q ss_pred eecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHH
Q psy503 42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLR 121 (333)
Q Consensus 42 ~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 121 (333)
++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|+++||+|.|++++..........+...++
T Consensus 11 ~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 90 (256)
T PRK06143 11 TRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLR 90 (256)
T ss_pred eecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999447999999999876543333445556778
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|++++|++++|..++++++++|++
T Consensus 91 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l~l~g~~ 169 (256)
T PRK06143 91 DLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRWLLLTGET 169 (256)
T ss_pred HHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHHHHHcCCc
Confidence 8899999999999999999999999999999999999999999999999998 778888999999999999999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (333)
++|+||+++||||+|||+ +++.+++.+++++++..+|.+++.+|+.++ .....
T Consensus 170 ~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~-------------------- 222 (256)
T PRK06143 170 IDAAQALAWGLVDRVVPL----AELDAAVERLAASLAGCGPQALRQQKRLLR---EWEDM-------------------- 222 (256)
T ss_pred CCHHHHHHCCCcCeecCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHccC--------------------
Confidence 999999999999999995 789999999999999999999999999999 65544
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Q psy503 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK 327 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~ 327 (333)
++++++..|...+..++.++|++||+++|++|||
T Consensus 223 ------------~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 223 ------------PLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred ------------CHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 7899999999999999999999999999999986
No 24
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.1e-55 Score=403.79 Aligned_cols=249 Identities=24% Similarity=0.402 Sum_probs=228.3
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEeCCCCccccCCCchhhcccCH------HHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDE-EVRCVLLRSLVKDVFCAGADLKHRLTLNE------DQIRSFV 117 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~-~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~------~~~~~~~ 117 (333)
+++|++||||||+++|++|.+|+.+|.++++.++.|+ ++++|||+|. |++||+|.|++++..... +....+.
T Consensus 11 ~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 89 (266)
T PRK05981 11 DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGA-GRGFCTGANLQGRGSGGRESDSGGDAGAALE 89 (266)
T ss_pred ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcccccCHHhhhcccccccccchhHHHHH
Confidence 6899999999999999999999999999999999876 4999999998 789999999998753211 1122344
Q ss_pred HHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHH
Q psy503 118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIY 197 (333)
Q Consensus 118 ~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~lll 197 (333)
..+++++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|+.+++++++
T Consensus 90 ~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l 169 (266)
T PRK05981 90 TAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSL 169 (266)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCC
Q psy503 198 TGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGS 277 (333)
Q Consensus 198 tG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (333)
+|++++|+||+++||||+|+|+ +++++++.+++++++..+|.+++.+|++++ .....
T Consensus 170 ~g~~~~a~eA~~~Glv~~vv~~----~~~~~~a~~~a~~l~~~~~~a~~~~K~~~~---~~~~~---------------- 226 (266)
T PRK05981 170 LGEKLPAETALQWGLVNRVVDD----AELMAEAMKLAHELANGPTVALGLIRKLYW---DSPEN---------------- 226 (266)
T ss_pred hCCCcCHHHHHHcCCceEeeCH----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---Hhhhc----------------
Confidence 9999999999999999999995 778999999999999999999999999998 65554
Q ss_pred CCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 278 KGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++.++++.|...+..++.++|++||+++|++||+|+|+++
T Consensus 227 ----------------~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~~~~ 266 (266)
T PRK05981 227 ----------------DFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQFKGR 266 (266)
T ss_pred ----------------CHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999874
No 25
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-54 Score=400.56 Aligned_cols=248 Identities=30% Similarity=0.451 Sum_probs=221.9
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|.++++||+|.|++++........ ....+..+
T Consensus 10 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~--~~~~~~~~ 87 (259)
T PRK06494 10 RKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGW--PESGFGGL 87 (259)
T ss_pred eECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchh--hhHHHHHH
Confidence 3689999999999999999999999999999999999999999999994479999999998754321111 11122333
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
. .+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++++++|++++
T Consensus 88 ~-~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~ 166 (259)
T PRK06494 88 T-SRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVT 166 (259)
T ss_pred H-HHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCC
Confidence 3 345899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+++|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 167 a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~---------------------- 217 (259)
T PRK06494 167 AREGLELGFVNEVVPA----GELLAAAERWADDILACSPLSIRASKQAVY---RGLEV---------------------- 217 (259)
T ss_pred HHHHHHcCCCcEecCH----hHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhccC----------------------
Confidence 9999999999999995 789999999999999999999999999999 65554
Q ss_pred CcccccccccCHHHHHHHH--HHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWE--GICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e--~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.| ...+..++.++|++||+++|++||+|+|+++
T Consensus 218 ----------~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 259 (259)
T PRK06494 218 ----------SLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRWKGR 259 (259)
T ss_pred ----------CHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCCCCC
Confidence 788999988 4577889999999999999999999999875
No 26
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-54 Score=399.13 Aligned_cols=246 Identities=33% Similarity=0.506 Sum_probs=222.3
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++|+||||+++|++|.+|+.+|.++|++++.|+++++|||+|. |++||+|.|++++....... .....+..+
T Consensus 9 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~~ 85 (254)
T PRK08252 9 RRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGA-GGTFCAGMDLKAFARGERPS--IPGRGFGGL 85 (254)
T ss_pred EECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCceEcCcCHHHHhcccchh--hhHHHHHHH
Confidence 378999999999999999999999999999999999999999999998 88999999999876432111 111122222
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+. ..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++++++|++++
T Consensus 86 ~~--~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~ 163 (254)
T PRK08252 86 TE--RPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLT 163 (254)
T ss_pred HH--hcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccC
Confidence 21 4699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++++++.+++++++..+|.+++.+|++++ .....
T Consensus 164 a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~---------------------- 214 (254)
T PRK08252 164 AERAHELGLVNRLTEP----GQALDAALELAERIAANGPLAVAASKRIVV---ESGDW---------------------- 214 (254)
T ss_pred HHHHHHcCCcceecCc----chHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC----------------------
Confidence 9999999999999996 779999999999999999999999999998 65544
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++.+.++.|...+..++.++|++||+++|++||+|+|+++
T Consensus 215 ----------~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~~~ 254 (254)
T PRK08252 215 ----------SEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVWTGK 254 (254)
T ss_pred ----------CHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999875
No 27
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-54 Score=399.77 Aligned_cols=247 Identities=28% Similarity=0.429 Sum_probs=223.1
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---CHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVSTLR 121 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~~~~~~~~~~~~~ 121 (333)
+++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++... ...........+.
T Consensus 12 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T PRK07468 12 ARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGA-GKSFCAGGDLGWMRAQMTADRATRIEEARRLA 90 (262)
T ss_pred CCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECC-CCcccCCcCHHHHHhhcccchhhHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999998 8899999999986431 1111122334566
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|..++++|+++|++
T Consensus 91 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~a~~lll~g~~ 169 (262)
T PRK07468 91 MMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEANARRVFMSARL 169 (262)
T ss_pred HHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHHHHHHHHHhCCc
Confidence 78889999999999999999999999999999999999999999999999999999888755 55999999999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (333)
++|+||+++||||+|+|+ +++.+.+.+++++++..+|.+++.+|++++ .....
T Consensus 170 ~~a~eA~~~Glv~~v~~~----~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~---~~~~~-------------------- 222 (262)
T PRK07468 170 FDAEEAVRLGLLSRVVPA----ERLDAAVEAEVTPYLSCAPGAVAAAKALVR---ALGAP-------------------- 222 (262)
T ss_pred cCHHHHHHcCCcceecCH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---hhhcc--------------------
Confidence 999999999999999995 779999999999999999999999999998 55433
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
.+++.++.|...+..++.++|++||+++|++||+|+|++
T Consensus 223 ------------~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~~~ 261 (262)
T PRK07468 223 ------------IDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAWRG 261 (262)
T ss_pred ------------ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence 578889999999999999999999999999999999986
No 28
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-54 Score=399.94 Aligned_cols=247 Identities=26% Similarity=0.394 Sum_probs=228.6
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC-HHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-EDQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~-~~~~~~~~~~~~~l 123 (333)
+++|++||||||++.|++|.+|+.+|.++++.+ .|+++++|||+|. |++||+|.|++++.... .+....+...++++
T Consensus 13 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (260)
T PRK07659 13 EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGN-GRGFSAGGDIKMMLSSNDESKFDGVMNTISEI 90 (260)
T ss_pred eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECC-CCCcccccCHHHHhhccCchhHHHHHHHHHHH
Confidence 789999999999999999999999999999999 5889999999998 88999999999875432 22334556677888
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++++++|+.++
T Consensus 91 ~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~ 170 (260)
T PRK07659 91 VVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLS 170 (260)
T ss_pred HHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||++| + +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 171 a~eA~~~Glv~~vv-~----~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~---------------------- 220 (260)
T PRK07659 171 ATEALDLGLIDEVI-G----GDFQTAAKQKISEWLQKPLKAMIETKQIYC---ELNRS---------------------- 220 (260)
T ss_pred HHHHHHcCChHHHh-h----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhcC----------------------
Confidence 99999999999999 5 568899999999999999999999999998 65544
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++.++.|...+..++.++|++||+++|++||+|+|+++
T Consensus 221 ----------~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~~~ 260 (260)
T PRK07659 221 ----------QLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVFKGE 260 (260)
T ss_pred ----------CHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999875
No 29
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=1.8e-54 Score=399.54 Aligned_cols=248 Identities=31% Similarity=0.499 Sum_probs=219.6
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH-HHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~-~~~~~~~~~~~~l 123 (333)
+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.++++||+|.|++++..... +........+..+
T Consensus 10 ~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (259)
T TIGR01929 10 TDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDV 89 (259)
T ss_pred CCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999994489999999987642111 0100011124567
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++++++|++++
T Consensus 90 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~ 169 (259)
T TIGR01929 90 QRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYD 169 (259)
T ss_pred HHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|++++ ....
T Consensus 170 a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~----------------------- 219 (259)
T TIGR01929 170 AEQALDMGLVNTVVPL----ADLEKETVRWCREILQKSPMAIRMLKAALN---ADCD----------------------- 219 (259)
T ss_pred HHHHHHcCCcccccCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhc-----------------------
Confidence 9999999999999995 789999999999999999999999999998 5432
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
.....+..|...+..++.++|++||+++|++||+|+|++
T Consensus 220 ----------~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~~ 258 (259)
T TIGR01929 220 ----------GQAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDFSK 258 (259)
T ss_pred ----------cchHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Confidence 224445567778888999999999999999999999986
No 30
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.2e-54 Score=401.89 Aligned_cols=256 Identities=23% Similarity=0.375 Sum_probs=224.1
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH---
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE--- 110 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~--- 110 (333)
|+.+.++ .+.++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++.....
T Consensus 4 ~~~l~~~--~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~ 80 (265)
T PRK05674 4 FQTIELI--RDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGR-GRHFSAGADLAWMQQSADLDY 80 (265)
T ss_pred cceEEEE--EcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhcccccc
Confidence 3444443 3347899999999999999999999999999999999999999999999 799999999998743211
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHH
Q psy503 111 DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIP 190 (333)
Q Consensus 111 ~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~ 190 (333)
.........+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+. .|++++|..
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~ 159 (265)
T PRK05674 81 NTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGER 159 (265)
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHH
Confidence 1111222345678889999999999999999999999999999999999999999999999999987766 588999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCC
Q psy503 191 LAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSP 270 (333)
Q Consensus 191 ~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~ 270 (333)
++++++++|+.|+|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 160 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~--------- 223 (265)
T PRK05674 160 AARRYALTAERFDGRRARELGLLAESYPA----AELEAQVEAWIANLLLNSPQALRASKDLLR---EVGDG--------- 223 (265)
T ss_pred HHHHHHHhCcccCHHHHHHCCCcceecCH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---Hhhcc---------
Confidence 99999999999999999999999999995 789999999999999999999999999999 66554
Q ss_pred CCCCCCCCCCCCCCcccccccccCHHHHHHH-HHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 271 GRDGQGSKGGESKGTENQNREFQGRYSGMEW-EGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
++.+++.. +...+..++.++|++||+++|++||+|+|++
T Consensus 224 -----------------------~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~~~ 263 (265)
T PRK05674 224 -----------------------ELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAWQT 263 (265)
T ss_pred -----------------------ChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCCCC
Confidence 67777764 4567788899999999999999999999976
No 31
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-54 Score=398.84 Aligned_cols=248 Identities=28% Similarity=0.454 Sum_probs=230.7
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---CHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVSTL 120 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~~~~~~~~~~~~ 120 (333)
.+++|++|+||||+++|++|.+|+.+|.++|++++.|+++++|||+|. |++||+|.|++++... ..+....+...+
T Consensus 9 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (260)
T PRK07511 9 REGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGA-GGFFCAGGNLNRLLENRAKPPSVQAASIDGL 87 (260)
T ss_pred eECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECC-CCCcccCcCHHHHhhcccccchhHHHHHHHH
Confidence 378999999999999999999999999999999999999999999998 8999999999987542 122334456677
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|+++|+
T Consensus 88 ~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~ 167 (260)
T PRK07511 88 HDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGK 167 (260)
T ss_pred HHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (333)
+++++||+++||||+|||+ +++++++.+++++++..+|.++..+|+.++ .....
T Consensus 168 ~~~a~eA~~~Glv~~vv~~----~~~~~~a~~~a~~l~~~~~~~~~~~K~~l~---~~~~~------------------- 221 (260)
T PRK07511 168 PISAERLHALGVVNRLAEP----GQALAEALALADQLAAGSPNALARIKSLIA---DAPEA------------------- 221 (260)
T ss_pred CCCHHHHHHcCCccEeeCc----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhcC-------------------
Confidence 9999999999999999996 678999999999999999999999999999 66555
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCC
Q psy503 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331 (333)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~ 331 (333)
++.++++.|...+..++.++|+++|+++|++||+|.|+
T Consensus 222 -------------~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~~ 259 (260)
T PRK07511 222 -------------TLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDYK 259 (260)
T ss_pred -------------CHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCCC
Confidence 78999999999999999999999999999999999995
No 32
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-54 Score=401.21 Aligned_cols=249 Identities=29% Similarity=0.445 Sum_probs=225.7
Q ss_pred CC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHH------HHH-
Q psy503 45 RP-GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQI------RSF- 116 (333)
Q Consensus 45 ~~-~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~------~~~- 116 (333)
++ +|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++........ ..+
T Consensus 12 ~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 90 (272)
T PRK06210 12 ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGA-GRGFCAGADMGELQTIDPSDGRRDTDVRPFV 90 (272)
T ss_pred CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECC-CCCcccccCHHHHhccCcccccccccchhhh
Confidence 56 899999999999999999999999999999999999999999998 789999999998754221100 011
Q ss_pred ---HHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHH
Q psy503 117 ---VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAK 193 (333)
Q Consensus 117 ---~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~ 193 (333)
...+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+++
T Consensus 91 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~ 170 (272)
T PRK06210 91 GNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANAL 170 (272)
T ss_pred hhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHHH
Confidence 11235567789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhc-CHHHHHHHHHHhcCCCCCCcccCCCCCCCCCC
Q psy503 194 ELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHN-GPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272 (333)
Q Consensus 194 ~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~-~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 272 (333)
+|+++|++++|+||+++||||+|+|+ +++.+++.+++++|+.. +|.++..+|+.++ +....
T Consensus 171 ~l~ltg~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~i~~~~~p~a~~~~K~~l~---~~~~~----------- 232 (272)
T PRK06210 171 DLLLSARTFYAEEALRLGLVNRVVPP----DELMERTLAYAEDLARNVSPASMAVIKRQLY---EDAFQ----------- 232 (272)
T ss_pred HHHHcCCccCHHHHHHcCCcceecCH----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcccC-----------
Confidence 99999999999999999999999995 77999999999999985 9999999999999 66554
Q ss_pred CCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 273 DGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|++||+|.|+++
T Consensus 233 ---------------------~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~~~ 272 (272)
T PRK06210 233 ---------------------TLAEATARANREMHESLQRPDFIEGVASFLEKRPPRFPGL 272 (272)
T ss_pred ---------------------CHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Confidence 7899999999999999999999999999999999999874
No 33
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=2.1e-54 Score=398.46 Aligned_cols=248 Identities=27% Similarity=0.432 Sum_probs=218.0
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.++++||+|.|++++..... ....+...++.+
T Consensus 8 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~ 86 (256)
T TIGR03210 8 KRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-GRGTIGLPMEEL 86 (256)
T ss_pred eeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-chhHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999995589999999998743211 111122345678
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|++++++|++++
T Consensus 87 ~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~ 166 (256)
T TIGR03210 87 HSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYT 166 (256)
T ss_pred HHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcC
Confidence 88999999999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|++++ .....
T Consensus 167 a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~---~~~~~---------------------- 217 (256)
T TIGR03210 167 AQEALAMGLVNAVVPH----DQLDAEVQKWCDEIVEKSPTAIAIAKRSFN---MDTAH---------------------- 217 (256)
T ss_pred HHHHHHcCCceeeeCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---Hhhcc----------------------
Confidence 9999999999999995 789999999999999999999999999998 54322
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
....+. .|...+..++.++|++||+++|++||+|.|++
T Consensus 218 ---------~~~~~~--~~~~~~~~~~~~~d~~e~~~af~~kr~p~~~~ 255 (256)
T TIGR03210 218 ---------QRGIAG--MGMYALKLYYDTAESREGVKAFQEKRKPEFRK 255 (256)
T ss_pred ---------cchHHH--HHHHHHHHHccChhHHHHHHHHhccCCCCCCC
Confidence 011111 24567788899999999999999999999986
No 34
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-54 Score=398.12 Aligned_cols=248 Identities=31% Similarity=0.499 Sum_probs=231.3
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|. |++||+|.|++++....... ..+...+++++
T Consensus 12 ~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~~ 89 (259)
T PRK06688 12 EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGA-GRAFSAGGDIKDFPKAPPKP-PDELAPVNRFL 89 (259)
T ss_pred ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCccCccCHHHHhccCcch-HHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 79999999999876533222 34556678889
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..++++++++|+++++
T Consensus 90 ~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a 169 (259)
T PRK06688 90 RAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSA 169 (259)
T ss_pred HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|+.++ .....
T Consensus 170 ~eA~~~Glv~~v~~~----~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~---~~~~~----------------------- 219 (259)
T PRK06688 170 EEALRIGLVNRVVPA----AELDAEADAQAAKLAAGPASALRYTKRAIN---AATLT----------------------- 219 (259)
T ss_pred HHHHHcCCcceecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhhC-----------------------
Confidence 999999999999995 779999999999999999999999999998 66554
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++++..|.+.+..++.++++++++++|++||+|+|++.
T Consensus 220 ---------~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~~~~ 259 (259)
T PRK06688 220 ---------ELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDFTGF 259 (259)
T ss_pred ---------CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 7899999999999999999999999999999999999874
No 35
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-54 Score=399.91 Aligned_cols=256 Identities=25% Similarity=0.345 Sum_probs=222.3
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc--CHH
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL--NED 111 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~--~~~ 111 (333)
++.+.++ ..+++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++... ..+
T Consensus 10 ~~~i~~~--~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~ 86 (268)
T PRK07327 10 YPALRFD--RPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGE-GKAFSAGGDLALVEEMADDFE 86 (268)
T ss_pred CCeEEEE--ecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECC-CCCcccccCHHHHhhccCcHH
Confidence 3444443 3367899999999999999999999999999999999999999999998 7899999999987542 122
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHH
Q psy503 112 QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPL 191 (333)
Q Consensus 112 ~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~ 191 (333)
....++..+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 166 (268)
T PRK07327 87 VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAK 166 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHH
Confidence 23334455677888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCC
Q psy503 192 AKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPG 271 (333)
Q Consensus 192 a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~ 271 (333)
+++++++|++++|+||+++||||+++|+ +++++++.++|++|+..+|.+++.+|++++ .....
T Consensus 167 a~~l~ltg~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~---------- 229 (268)
T PRK07327 167 AKYYLLLCEPVSGEEAERIGLVSLAVDD----DELLPKALEVAERLAAGSQTAIRWTKYALN---NWLRM---------- 229 (268)
T ss_pred HHHHHHcCCccCHHHHHHcCCcceecCH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---Hhhhh----------
Confidence 9999999999999999999999999995 789999999999999999999999999998 43211
Q ss_pred CCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 272 RDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
....++..+..| ..++.++|++||+++|++||+|+|+|
T Consensus 230 -------------------~~~~~~~~~~~~----~~~~~~~d~~eg~~af~ekr~p~~~~ 267 (268)
T PRK07327 230 -------------------AGPTFDTSLALE----FMGFSGPDVREGLASLREKRAPDFPG 267 (268)
T ss_pred -------------------hhhhHHHHHHHH----HHHccChhHHHHHHHHHhcCCCCCCC
Confidence 000344444444 34678999999999999999999987
No 36
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.3e-54 Score=397.59 Aligned_cols=246 Identities=29% Similarity=0.473 Sum_probs=221.9
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC-HHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-EDQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~-~~~~~~~~~~~~~l 123 (333)
+++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||+|.++++||+|.|++++.... .+....+...++.+
T Consensus 15 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
T PRK06144 15 RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRV 94 (262)
T ss_pred eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998547999999999875432 12223344556778
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccc-cCccCChhhhhhcccccCHHHHHHHHHcCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK-LAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~-~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i 202 (333)
+..+..+||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++|..++++++++|+++
T Consensus 95 ~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~ 174 (262)
T PRK06144 95 LGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLL 174 (262)
T ss_pred HHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCc
Confidence 88999999999999999999999999999999999999999999996 99999999999999999999999999999999
Q ss_pred CHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy503 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (333)
+|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|+.++ .....
T Consensus 175 ~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~---~~~~~--------------------- 226 (262)
T PRK06144 175 EAEEALAAGLVNEVVED----AALDARADALAELLAAHAPLTLRATKEALR---RLRRE--------------------- 226 (262)
T ss_pred CHHHHHHcCCcCeecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---Hhhhc---------------------
Confidence 99999999999999995 789999999999999999999999999998 54332
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
.+ ..+.+.+..++.++|++||+++|++||+|+|+++
T Consensus 227 -----------~l----~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~~~~ 262 (262)
T PRK06144 227 -----------GL----PDGDDLIRMCYMSEDFREGVEAFLEKRPPKWKGR 262 (262)
T ss_pred -----------CH----HHHHHHHHHHhcChHHHHHHHHHhcCCCCCCCCC
Confidence 23 3455677889999999999999999999999874
No 37
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.9e-54 Score=399.08 Aligned_cols=251 Identities=28% Similarity=0.358 Sum_probs=221.2
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC-------HHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-------EDQIRSF 116 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~-------~~~~~~~ 116 (333)
.+++|++|+||||+++|++|.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++.... .......
T Consensus 16 ~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 94 (276)
T PRK05864 16 PRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGA-GRGFSSGADHKSAGVVPHVEGLTRPTYALRS 94 (276)
T ss_pred ecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcchhhhhcccccccccchhHHHHH
Confidence 378999999999999999999999999999999999999999999998 88999999999864211 1111123
Q ss_pred HHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccC-ChhhhhhcccccCHHHHHHH
Q psy503 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIP-GAGGTQRLPRIVGIPLAKEL 195 (333)
Q Consensus 117 ~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p-~~g~~~~L~r~iG~~~a~~l 195 (333)
...++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|..+++++
T Consensus 95 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l 174 (276)
T PRK05864 95 MELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEI 174 (276)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHHHHHHH
Confidence 34566778889999999999999999999999999999999999999999999999997 68888999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCC
Q psy503 196 IYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQ 275 (333)
Q Consensus 196 lltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~ 275 (333)
+++|++++|+||+++||||+|+|+ +++.+++.++|++|+..+|.+++.+|+.++ .....
T Consensus 175 ~l~g~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~-------------- 233 (276)
T PRK05864 175 MLTGRDVDAEEAERIGLVSRQVPD----EQLLDTCYAIAARMAGFSRPGIELTKRTLW---SGLDA-------------- 233 (276)
T ss_pred HHcCCccCHHHHHHcCCcceeeCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhccc--------------
Confidence 999999999999999999999995 789999999999999999999999999998 54321
Q ss_pred CCCCCCCCCcccccccccCHHHHHHHHHHHH-HHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 276 GSKGGESKGTENQNREFQGRYSGMEWEGICY-DRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~-~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
.++++.+..|.... ...+.++|++||+++|++||+|+|+++
T Consensus 234 -----------------~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~~~~ 275 (276)
T PRK05864 234 -----------------ASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVFTDD 275 (276)
T ss_pred -----------------CCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCCCCC
Confidence 04677777776532 235789999999999999999999874
No 38
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=6.3e-54 Score=396.37 Aligned_cols=249 Identities=29% Similarity=0.468 Sum_probs=222.9
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++||||||+ .|++|.+|+.+|.++|+.++.|+++++|||+|.++++||+|.|++++....... ..+......+
T Consensus 9 ~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~ 86 (261)
T PRK03580 9 RNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-ADFGPGGFAG 86 (261)
T ss_pred EECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch-hhhhhhhhHH
Confidence 37899999999995 699999999999999999999999999999999558999999999875432111 1111222345
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++++++|++++
T Consensus 87 ~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~ 166 (261)
T PRK03580 87 LTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMD 166 (261)
T ss_pred HHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 167 a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~---------------------- 217 (261)
T PRK03580 167 AEEALRWGIVNRVVPQ----AELMDRARELAQQLVNSAPLAIAALKEIYR---ETSEM---------------------- 217 (261)
T ss_pred HHHHHHcCCCcEecCH----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC----------------------
Confidence 9999999999999995 789999999999999999999999999998 65544
Q ss_pred CcccccccccCHHHHHHHHHH----HHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGI----CYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~----~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|.. .+..++.++|++||+++|++||+|+|+++
T Consensus 218 ----------~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~~ 261 (261)
T PRK03580 218 ----------PVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVWKGR 261 (261)
T ss_pred ----------CHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCCCCC
Confidence 78888888763 67889999999999999999999999874
No 39
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.6e-54 Score=394.96 Aligned_cols=246 Identities=29% Similarity=0.499 Sum_probs=224.1
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc--CHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL--NEDQIRSFVSTLR 121 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~--~~~~~~~~~~~~~ 121 (333)
.+++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++... ..+....+...++
T Consensus 10 ~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (257)
T PRK06495 10 VSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGA-GKVFCAGADLKGRPDVIKGPGDLRAHNRRTR 87 (257)
T ss_pred eeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCCcccCcCHHhHhhccCCchhHHHHHHHHH
Confidence 37899999999998 699999999999999999999999999999998 8999999999987542 1122233445567
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|+.++++|+++|++
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~lll~g~~ 164 (257)
T PRK06495 88 ECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLTGYR 164 (257)
T ss_pred HHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHHHHHHHcCCe
Confidence 78889999999999999999999999999999999999999999999999996 456679999999999999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (333)
++|+||+++||||+++|+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 165 ~~a~eA~~~GLv~~vv~~----~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~-------------------- 217 (257)
T PRK06495 165 VPAAELYRRGVIEACLPP----EELMPEAMEIAREIASKSPLATRLAKDALN---TIENM-------------------- 217 (257)
T ss_pred eCHHHHHHcCCcceecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC--------------------
Confidence 999999999999999995 779999999999999999999999999999 65554
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|++||+|+|+++
T Consensus 218 ------------~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~~~~ 257 (257)
T PRK06495 218 ------------SLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVFKGR 257 (257)
T ss_pred ------------CHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCCCCC
Confidence 7899999999999999999999999999999999999975
No 40
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=1e-53 Score=397.29 Aligned_cols=248 Identities=29% Similarity=0.459 Sum_probs=219.6
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH--HHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE--DQIRSFVSTLR 121 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~--~~~~~~~~~~~ 121 (333)
.+++|++||||||+++|++|.+|+.+|.++|+.++.|+++++|||+|.|+++||+|.|++++..... ....... ...
T Consensus 19 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~ 97 (273)
T PRK07396 19 SADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRL-NVL 97 (273)
T ss_pred ecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhh-HHH
Confidence 3789999999999999999999999999999999999999999999984479999999998643211 1111111 234
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++|..++++|+++|++
T Consensus 98 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~ 177 (273)
T PRK07396 98 DLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQ 177 (273)
T ss_pred HHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCC
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (333)
++|+||+++||||+|||+ +++.+++.++|++|+..+|.+++.+|+.++ ....
T Consensus 178 ~~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~--------------------- 229 (273)
T PRK07396 178 YDAQEALDMGLVNTVVPL----ADLEKETVRWCREMLQNSPMALRCLKAALN---ADCD--------------------- 229 (273)
T ss_pred cCHHHHHHcCCcCeecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhc---------------------
Confidence 999999999999999995 789999999999999999999999999998 5422
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
..+...+.|...+..++.++|++||+++|++||+|+|++
T Consensus 230 ------------~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~~ 268 (273)
T PRK07396 230 ------------GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFSK 268 (273)
T ss_pred ------------cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCCC
Confidence 344445567778888999999999999999999999986
No 41
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=7.6e-54 Score=395.70 Aligned_cols=249 Identities=25% Similarity=0.442 Sum_probs=224.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLV-KDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
+++|++||||||+++|++|.+|+.+|.++++.++.|+ +++|||+|.+ +++||+|.|++++.....+ ...+...++.+
T Consensus 11 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~-~~~~~~~~~~l 88 (261)
T PRK11423 11 INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRD-PLSYDDPLRQI 88 (261)
T ss_pred ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcccc-HHHHHHHHHHH
Confidence 7899999999999999999999999999999999887 9999999963 5899999999987532211 12334556778
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|+.++++++++|++++
T Consensus 89 ~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~ 168 (261)
T PRK11423 89 LRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPIT 168 (261)
T ss_pred HHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|||+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 169 a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~---~~~~~---------------------- 219 (261)
T PRK11423 169 AQRALAVGILNHVVEV----EELEDFTLQMAHHISEKAPLAIAVIKEQLR---VLGEA---------------------- 219 (261)
T ss_pred HHHHHHcCCcCcccCH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---hhccc----------------------
Confidence 9999999999999995 789999999999999999999999999998 44321
Q ss_pred CcccccccccCH-HHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGR-YSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~-~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
..+ ++.++.|.+.+..++.++|++||+.+|++||+|+|+++
T Consensus 220 ---------~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~~~~ 261 (261)
T PRK11423 220 ---------HPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVFVGH 261 (261)
T ss_pred ---------CCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCCCCC
Confidence 023 57788888888999999999999999999999999875
No 42
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-53 Score=399.51 Aligned_cols=250 Identities=32% Similarity=0.471 Sum_probs=220.8
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---C------------
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---N------------ 109 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~------------ 109 (333)
+++|++||||||++.|++|.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++... .
T Consensus 11 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (296)
T PRK08260 11 ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGA-GRAFCAGADLSAGGNTFDLDAPRTPVEADEED 89 (296)
T ss_pred eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECC-CCCeecCcChHHhhhccccccccccccccccc
Confidence 78999999999999999999999999999999999999999999998 7999999999986420 0
Q ss_pred -HH-HHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhccccc
Q psy503 110 -ED-QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIV 187 (333)
Q Consensus 110 -~~-~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~i 187 (333)
.. ....+...++.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~v 169 (296)
T PRK08260 90 RADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLV 169 (296)
T ss_pred ccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhh
Confidence 00 1112333456688889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhc-CHHHHHHHHHHhcCCCCCCcccCCCC
Q psy503 188 GIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHN-GPIAVRMAKRSIDGPGRGTQYRDGQS 266 (333)
Q Consensus 188 G~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~-~~~a~~~~K~~l~~~~~~~~~~~~~~ 266 (333)
|..++++|+++|++++|+||+++||||+|||+ +++++++.+++++|+.. +|.+++.+|++++ ......
T Consensus 170 G~~~A~~llltg~~~~a~eA~~~GLv~~vv~~----~~l~~~a~~~a~~i~~~~~~~a~~~~K~~l~---~~~~~~---- 238 (296)
T PRK08260 170 GLQTALEWVYSGRVFDAQEALDGGLVRSVHPP----DELLPAARALAREIADNTSPVSVALTRQMMW---RMAGAD---- 238 (296)
T ss_pred CHHHHHHHHHcCCccCHHHHHHCCCceeecCH----HHHHHHHHHHHHHHHhcCChHHHHHHHHHHH---hcccCC----
Confidence 99999999999999999999999999999995 78999999999999995 9999999999998 543210
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 267 THSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
.... ....|...+..++.++|++||+++|++||+|+|+++
T Consensus 239 --------------------------~~~~-~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~~ 278 (296)
T PRK08260 239 --------------------------HPME-AHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPGK 278 (296)
T ss_pred --------------------------CcHH-HHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCCC
Confidence 0233 345677788889999999999999999999999874
No 43
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-53 Score=394.06 Aligned_cols=246 Identities=30% Similarity=0.516 Sum_probs=223.6
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHH---HH----HH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQI---RS----FV 117 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~---~~----~~ 117 (333)
+++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++.....+.. .. ..
T Consensus 10 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (262)
T PRK07509 10 EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGE-GGAFCAGLDVKSVASSPGNAVKLLFKRLPGNA 88 (262)
T ss_pred eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECC-CCCcCCCcCHHHHhcccchhhhhHhhhhHHHH
Confidence 78999999999999999999999999999999999999999999998 889999999998754321111 11 11
Q ss_pred HHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHH
Q psy503 118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIY 197 (333)
Q Consensus 118 ~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~lll 197 (333)
..+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+++++++
T Consensus 89 ~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l 168 (262)
T PRK07509 89 NLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTY 168 (262)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHH
Confidence 23456677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCC
Q psy503 198 TGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGS 277 (333)
Q Consensus 198 tG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (333)
+|++++|+||+++||||+++++ +.+++.+++++++..+|.++..+|+.++ .....
T Consensus 169 tg~~~~a~eA~~~Glv~~vv~~------~~~~a~~~a~~l~~~~~~~~~~~K~~l~---~~~~~---------------- 223 (262)
T PRK07509 169 TARVFSAEEALELGLVTHVSDD------PLAAALALAREIAQRSPDAIAAAKRLIN---RSWTA---------------- 223 (262)
T ss_pred cCCCcCHHHHHHcCChhhhhch------HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhcC----------------
Confidence 9999999999999999999974 5788999999999999999999999999 66554
Q ss_pred CCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 278 KGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
++.+++..|.+.+..++.++|++||+++|+|||+|.|++
T Consensus 224 ----------------~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~~~ 262 (262)
T PRK07509 224 ----------------SVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKFLD 262 (262)
T ss_pred ----------------CHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCCC
Confidence 788999999999999999999999999999999999974
No 44
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=1.7e-53 Score=396.18 Aligned_cols=254 Identities=25% Similarity=0.376 Sum_probs=224.7
Q ss_pred cceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC---H
Q psy503 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN---E 110 (333)
Q Consensus 34 ~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~---~ 110 (333)
|+.+.++. +++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++.... .
T Consensus 7 ~~~i~~~~---~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~ 82 (275)
T PRK09120 7 WDTVKVEV---EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGA-GDAWSAGMDLKEYFRETDAQP 82 (275)
T ss_pred cccEEEEE---ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcC-CCceecCcCHHHHhhccccch
Confidence 55566554 68999999999999999999999999999999999999999999998 88999999999864311 1
Q ss_pred H-HHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCH
Q psy503 111 D-QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI 189 (333)
Q Consensus 111 ~-~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~ 189 (333)
. ....+...++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~ 162 (275)
T PRK09120 83 EILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGH 162 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCH
Confidence 1 122233445677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCC
Q psy503 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHS 269 (333)
Q Consensus 190 ~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~ 269 (333)
.++++++++|++++|+||+++||||+|||+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 163 ~~a~~llltg~~~~A~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~-------- 227 (275)
T PRK09120 163 RDALYYIMTGETFTGRKAAEMGLVNESVPL----AQLRARTRELAAKLLEKNPVVLRAAKDGFK---RVREL-------- 227 (275)
T ss_pred HHHHHHHhcCCccCHHHHHHcCCcceecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHHhC--------
Confidence 999999999999999999999999999995 789999999999999999999999999999 66554
Q ss_pred CCCCCCCCCCCCCCCcccccccccCHHHHHHHHHH--HHHHHhcCc-cHHHHHHHHhccCCCCC
Q psy503 270 PGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGI--CYDRVIRTQ-DRVEGLKSFLGKYKPVY 330 (333)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~--~~~~~~~~~-d~~egi~aflekr~p~~ 330 (333)
++.+.++.|.. .+..++.++ |++||+++|++||.++.
T Consensus 228 ------------------------~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~~~~ 267 (275)
T PRK09120 228 ------------------------TWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKSYKP 267 (275)
T ss_pred ------------------------CHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcccCCc
Confidence 78888887764 345678898 89999999999987443
No 45
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-53 Score=389.71 Aligned_cols=243 Identities=23% Similarity=0.310 Sum_probs=222.4
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++.... ...+.+.++.+
T Consensus 6 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~---~~~~~~~~~~~ 81 (248)
T PRK06072 6 SREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGE-GRAFCVGADLSEFAPDF---AIDLRETFYPI 81 (248)
T ss_pred EECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhhh---HHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999998 78999999999875321 12334556778
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|. ++++++++|++|+
T Consensus 82 ~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll~g~~~~ 160 (248)
T PRK06072 82 IREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILVLGGEFT 160 (248)
T ss_pred HHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHHhCCccC
Confidence 889999999999999999999999999999999999999999999999999999999999999997 8999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||.+ + ++++++.++|++|+..||.+++.+|+.++ +....
T Consensus 161 a~eA~~~Glv~~~-~------~~~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~---------------------- 208 (248)
T PRK06072 161 AEEAERWGLLKIS-E------DPLSDAEEMANRISNGPFQSYIAAKRMIN---LVLYN---------------------- 208 (248)
T ss_pred HHHHHHCCCcccc-c------hHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHhhc----------------------
Confidence 9999999999953 3 25788999999999999999999999998 65554
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++.++.|.+.+..++.++|++||+++|++||+|+|+++
T Consensus 209 ----------~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 248 (248)
T PRK06072 209 ----------DLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKFKGI 248 (248)
T ss_pred ----------CHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCCCCC
Confidence 7899999999999999999999999999999999999985
No 46
>PLN02921 naphthoate synthase
Probab=100.00 E-value=6.7e-53 Score=399.51 Aligned_cols=260 Identities=26% Similarity=0.425 Sum_probs=222.1
Q ss_pred CccceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHH
Q psy503 32 RKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED 111 (333)
Q Consensus 32 ~~~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~ 111 (333)
.+|+.+.++.. .+++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|.|++++......
T Consensus 62 ~~~~~i~~~~~-~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~ 140 (327)
T PLN02921 62 KEFTDIIYEKA-VGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYV 140 (327)
T ss_pred cCCceEEEEEe-cCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhccccc
Confidence 34554444421 25899999999999999999999999999999999999999999999944899999999976432111
Q ss_pred HHHHHHH-HHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHH
Q psy503 112 QIRSFVS-TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIP 190 (333)
Q Consensus 112 ~~~~~~~-~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~ 190 (333)
....... ...+++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 141 ~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~ 220 (327)
T PLN02921 141 GPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQK 220 (327)
T ss_pred chhHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHH
Confidence 0111111 134567789999999999999999999999999999999999999999999999999998899999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCC
Q psy503 191 LAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSP 270 (333)
Q Consensus 191 ~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~ 270 (333)
++++|+++|+.|+|+||+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|++++ ...+.
T Consensus 221 ~A~ellltG~~~~A~eA~~~GLV~~vv~~----~~l~~~a~~~a~~la~~~p~al~~~K~~l~---~~~~~--------- 284 (327)
T PLN02921 221 KAREMWFLARFYTASEALKMGLVNTVVPL----DELEGETVKWCREILRNSPTAIRVLKSALN---AADDG--------- 284 (327)
T ss_pred HHHHHHHcCCcCCHHHHHHCCCceEEeCH----HHHHHHHHHHHHHHHccCHHHHHHHHHHHH---Hhhcc---------
Confidence 99999999999999999999999999995 789999999999999999999999999998 54322
Q ss_pred CCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 271 GRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
.......+...+..++.++|++||+++|+|||+|+|++
T Consensus 285 ------------------------~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~~ 322 (327)
T PLN02921 285 ------------------------HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFSK 322 (327)
T ss_pred ------------------------hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence 22333444577788889999999999999999999986
No 47
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.7e-53 Score=387.87 Aligned_cols=243 Identities=24% Similarity=0.319 Sum_probs=219.4
Q ss_pred eecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH-HHHHHHHHHH
Q psy503 42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTL 120 (333)
Q Consensus 42 ~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~-~~~~~~~~~~ 120 (333)
++.+++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++..... .........+
T Consensus 6 ~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 83 (249)
T PRK07938 6 TTPEPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAE-GRGFNAGVDIKELQATPGFTALIDANRGC 83 (249)
T ss_pred cccCCCEEEEEECCCC-cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHH
Confidence 4558999999999997 599999999999999999999999999999998 899999999998754321 2222233445
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|+.++++++++|+
T Consensus 84 ~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~ 160 (249)
T PRK07938 84 FAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAA 160 (249)
T ss_pred HHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCC
Confidence 678888999999999999999999999999999999999999999999999986 45568999999999999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (333)
+++|+||+++||||+|||+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 161 ~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~------------------- 214 (249)
T PRK07938 161 TITAAELHHFGSVEEVVPR----DQLDEAALEVARKIAAKDTRVIRAAKEALN---GIDPQ------------------- 214 (249)
T ss_pred cCCHHHHHHCCCccEEeCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhccC-------------------
Confidence 9999999999999999995 889999999999999999999999999998 65444
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Q psy503 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKP 328 (333)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p 328 (333)
++++.++.|...+..++.++|++||+++|+|||+|
T Consensus 215 -------------~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 215 -------------DVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred -------------CHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 78889999999999999999999999999999998
No 48
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=5.4e-53 Score=390.77 Aligned_cols=244 Identities=26% Similarity=0.390 Sum_probs=220.7
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||+|. |++||+|+|++++........ .....++
T Consensus 16 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~---~~~~~~~ 91 (265)
T PLN02888 16 SRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGS-GRAFCSGVDLTAAEEVFKGDV---KDVETDP 91 (265)
T ss_pred ccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCcccCCCCHHHHHhhccchh---hHHHHHH
Confidence 378999999999999999999999999999999999999999999998 789999999997643111111 1123456
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|+.++++++++|++|+
T Consensus 92 ~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~ 171 (265)
T PLN02888 92 VAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLT 171 (265)
T ss_pred HHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccC
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|||+ +++.+++.+++++|+..+|.+++.+|+.++ .....
T Consensus 172 a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~---------------------- 222 (265)
T PLN02888 172 AETAERWGLVNHVVEE----SELLKKAREVAEAIIKNNQGMVLRYKSVIN---DGLKL---------------------- 222 (265)
T ss_pred HHHHHHcCCccEeeCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC----------------------
Confidence 9999999999999995 779999999999999999999999999998 66554
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHh--cCccHHHHHHHHhccCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVI--RTQDRVEGLKSFLGKYKPVY 330 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~--~~~d~~egi~aflekr~p~~ 330 (333)
++++++..|...+..++ .++|++||+++|++||+|+=
T Consensus 223 ----------~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~ 261 (265)
T PLN02888 223 ----------DLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKK 261 (265)
T ss_pred ----------CHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCC
Confidence 78889999988887775 59999999999999999873
No 49
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5e-53 Score=389.11 Aligned_cols=243 Identities=21% Similarity=0.321 Sum_probs=223.9
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC----HHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQIRSFVSTL 120 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~----~~~~~~~~~~~ 120 (333)
+++|++|+||||++.|++|.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++.... ......+.+.+
T Consensus 9 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK07260 9 EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINAN-GKVFSVGGDLVEMKRAVDEDDVQSLVKIAELV 87 (255)
T ss_pred ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCcccccCHHHHHhhccccchhhHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 79999999999875321 11222344556
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++|+++|+
T Consensus 88 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~ 167 (255)
T PRK07260 88 NEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGE 167 (255)
T ss_pred HHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCC
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (333)
+++|+||+++||||+++|+ +++.+++.+++++++..+|.+++.+|+.++ .....
T Consensus 168 ~~sa~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~~~---~~~~~------------------- 221 (255)
T PRK07260 168 ALTAEKALEYGFVYRVAES----EKLEKTCEQLLKKLRRGSSNSYAAIKSLVW---ESFFK------------------- 221 (255)
T ss_pred ccCHHHHHHcCCcceecCH----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHhhc-------------------
Confidence 9999999999999999995 779999999999999999999999999999 65554
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Q psy503 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK 327 (333)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~ 327 (333)
++++.+..|...+..++.++|++||+++|++||+
T Consensus 222 -------------~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 222 -------------GWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred -------------CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999999986
No 50
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.3e-53 Score=384.91 Aligned_cols=237 Identities=29% Similarity=0.448 Sum_probs=217.6
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+++|++|.+|+.+|.+++++++.+ ++++|||||. |++||+|.|+++... ...+...+..++
T Consensus 7 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~-g~~F~aG~Dl~~~~~-----~~~~~~~~~~~~ 79 (243)
T PRK07854 7 DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQ-GTVFCAGADLSGDVY-----ADDFPDALIEML 79 (243)
T ss_pred eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECC-CCceecccCCccchh-----HHHHHHHHHHHH
Confidence 689999999999999999999999999999999865 8999999998 899999999985311 123445567788
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++|+++|++++|
T Consensus 80 ~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a 159 (243)
T PRK07854 80 HAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTA 159 (243)
T ss_pred HHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+|++. +++.+++++|+..+|.+++.+|+.++ .. .
T Consensus 160 ~eA~~~Glv~~v~~~--------~~a~~~a~~l~~~~~~a~~~~K~~l~---~~--~----------------------- 203 (243)
T PRK07854 160 EQALATGMANRIGTL--------ADAQAWAAEIAGLAPLALQHAKRVLN---DD--G----------------------- 203 (243)
T ss_pred HHHHHCCCcccccCH--------HHHHHHHHHHHhCCHHHHHHHHHHHH---cc--C-----------------------
Confidence 999999999999761 27899999999999999999999998 54 3
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
+++++++.|...+..++.++|++||+++|++||+|.|+++
T Consensus 204 ---------~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~~~ 243 (243)
T PRK07854 204 ---------AIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKFQGA 243 (243)
T ss_pred ---------CHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCCCCC
Confidence 6888999999999999999999999999999999999875
No 51
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=9.9e-53 Score=386.09 Aligned_cols=242 Identities=28% Similarity=0.446 Sum_probs=215.0
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++... ....+...+.+++
T Consensus 8 ~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~-g~~FcaG~Dl~~~~~~---~~~~~~~~~~~~~ 82 (251)
T TIGR03189 8 DGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAE-GPHFSFGASVAEHMPD---QCAAMLASLHKLV 82 (251)
T ss_pred eCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECC-CCceecCcChhhhCch---hHHHHHHHHHHHH
Confidence 6889999999997 699999999999999999999999999999998 8899999999975321 1223344566788
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++ ++++|++++|+.++++|+++|++++|
T Consensus 83 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~ltg~~~~a 161 (251)
T TIGR03189 83 IAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRVAAEDLLYSGRSIDG 161 (251)
T ss_pred HHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHHHHHHHHHcCCCCCH
Confidence 89999999999999999999999999999999999999999999999999874 56789999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHH-HHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRI-AEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~-a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
+||+++||||+|+|+ .+ +++.++ +++|+..||.+++.+|++++ .....
T Consensus 162 ~eA~~~Glv~~v~~~----~~--~~a~~~~a~~la~~~p~a~~~~K~~l~---~~~~~---------------------- 210 (251)
T TIGR03189 162 AEGARIGLANAVAED----PE--NAALAWFDEHPAKLSASSLRFAVRAAR---LGMNE---------------------- 210 (251)
T ss_pred HHHHHCCCcceecCc----HH--HHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhcc----------------------
Confidence 999999999999985 22 456666 68999999999999999998 65544
Q ss_pred CcccccccccCHHHHH-HHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 284 GTENQNREFQGRYSGM-EWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l-~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++++++ ..|...+..++.++|++||+++|++||+|.|+++
T Consensus 211 ----------~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~~~ 251 (251)
T TIGR03189 211 ----------RVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALWEDR 251 (251)
T ss_pred ----------cHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCCCCC
Confidence 677666 3777888889999999999999999999999875
No 52
>KOG1679|consensus
Probab=100.00 E-value=2.4e-53 Score=366.12 Aligned_cols=266 Identities=50% Similarity=0.819 Sum_probs=257.5
Q ss_pred ccceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHH
Q psy503 33 KLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ 112 (333)
Q Consensus 33 ~~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~ 112 (333)
..+....++...+.||.+|.+|||.+.|+++.-|+++|.++|+++..|+.+++|+|.+..++.||+|.||++...+++.+
T Consensus 26 ~~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~E 105 (291)
T KOG1679|consen 26 ANEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSE 105 (291)
T ss_pred CceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHH
Confidence 46777788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHH
Q psy503 113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192 (333)
Q Consensus 113 ~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a 192 (333)
+..|...++.++..|.++|.||||+|+|.++|||++|+|+||+|+|+++++|+++|++++++|+.|++++|+|.+|...+
T Consensus 106 v~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~ala 185 (291)
T KOG1679|consen 106 VTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALA 185 (291)
T ss_pred HHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCC
Q psy503 193 KELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272 (333)
Q Consensus 193 ~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 272 (333)
+++++|++.+++.||..+||||++|..+|..+...++++++|++|..+.|.+++..|.+++ ++.+.
T Consensus 186 KELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPiavr~aKlAIn---~G~ev----------- 251 (291)
T KOG1679|consen 186 KELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIAVRLAKLAIN---LGMEV----------- 251 (291)
T ss_pred HhHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchhhhHHHHHhc---cCcee-----------
Confidence 9999999999999999999999999988777889999999999999999999999999999 88887
Q ss_pred CCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 273 DGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
++..++..|...+.+.+-+.|..||+.+|-|||+|.|+|.
T Consensus 252 ---------------------diasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y~G~ 291 (291)
T KOG1679|consen 252 ---------------------DIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEYKGE 291 (291)
T ss_pred ---------------------cccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcCCC
Confidence 8999999999999999999999999999999999999984
No 53
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=2.6e-52 Score=384.75 Aligned_cols=245 Identities=37% Similarity=0.645 Sum_probs=225.8
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcc-cCHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLT-LNEDQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~-~~~~~~~~~~~~~~~l 123 (333)
.++|++||||||+++|++|.+|+.+|.++|+.++.|+++++|||||. |++||+|.|++.+.. ........+....+.+
T Consensus 12 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (257)
T COG1024 12 EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGA-GKAFSAGADLKELLSPEDGNAAENLMQPGQDL 90 (257)
T ss_pred eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhcccchhHHHHHHhHHHHH
Confidence 45699999999999999999999999999999999999999999999 699999999999874 2222223566677789
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+++++++||+.++
T Consensus 91 ~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~ 170 (257)
T COG1024 91 LRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPIS 170 (257)
T ss_pred HHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCC
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
++||+++|||++++++ ++++++.+.+++++++. +|.++..+|+.++ .....
T Consensus 171 a~eA~~~Glv~~vv~~---~~~l~~~a~~~a~~~a~-~~~a~~~~k~~~~---~~~~~---------------------- 221 (257)
T COG1024 171 AAEALELGLVDEVVPD---AEELLERALELARRLAA-PPLALAATKRLVR---AALEA---------------------- 221 (257)
T ss_pred HHHHHHcCCcCeeeCC---HHHHHHHHHHHHHHHcc-CHHHHHHHHHHHH---Hhhhc----------------------
Confidence 9999999999999996 47899999999999998 9999999999999 66554
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~ 330 (333)
.+++.+..|...+...+.++|++||+++|++ |+|.|
T Consensus 222 ----------~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p~~ 257 (257)
T COG1024 222 ----------DLAEALEAEALAFARLFSSEDFREGVRAFLE-RKPVF 257 (257)
T ss_pred ----------cHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCCCC
Confidence 5788889998888888899999999999999 99998
No 54
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-52 Score=385.03 Aligned_cols=244 Identities=27% Similarity=0.385 Sum_probs=222.7
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc--CHH-HHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL--NED-QIRSFVSTLR 121 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~--~~~-~~~~~~~~~~ 121 (333)
+++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++... ... ....+...+.
T Consensus 13 ~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 91 (260)
T PRK07827 13 DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHT-GGTFCAGADLSEAGGGGGDPYDAAVARAREMT 91 (260)
T ss_pred eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC-CCCccCCcChHHHhhcccCchhHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 7899999999987542 211 1223455677
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++++. ..++++++++|++
T Consensus 92 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~l~g~~ 170 (260)
T PRK07827 92 ALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAARYYLTGEK 170 (260)
T ss_pred HHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHHHHHHhCCc
Confidence 888999999999999999999999999999999999999999999999999999999999999865 5699999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (333)
++|+||+++||||+++++ +.+++.+++++|+..+|.+++.+|+.++ +....
T Consensus 171 ~~a~eA~~~Glv~~v~~~------l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~-------------------- 221 (260)
T PRK07827 171 FGAAEAARIGLVTAAADD------VDAAVAALLADLRRGSPQGLAESKALTT---AAVLA-------------------- 221 (260)
T ss_pred cCHHHHHHcCCcccchHH------HHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhcC--------------------
Confidence 999999999999999752 7889999999999999999999999999 66554
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCC
Q psy503 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331 (333)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~ 331 (333)
.+.+.++.|...+..++.++|++|++++|++||+|+|+
T Consensus 222 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~~~ 259 (260)
T PRK07827 222 ------------GFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPRWA 259 (260)
T ss_pred ------------CHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCCC
Confidence 78899999999999999999999999999999999996
No 55
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-52 Score=382.92 Aligned_cols=237 Identities=22% Similarity=0.373 Sum_probs=217.0
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHH
Q psy503 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ 126 (333)
Q Consensus 47 ~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~ 126 (333)
+|++||||||++.|++|.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++.....+ ...+...+++++..
T Consensus 15 ~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~-~~~~~~~~~~~~~~ 92 (251)
T PRK06023 15 GVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGT-EGCFSAGNDMQDFLAAAMG-GTSFGSEILDFLIA 92 (251)
T ss_pred cEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcCHHHHhhcccc-chhhHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999998 8899999999987542111 11233455678889
Q ss_pred HhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHH
Q psy503 127 LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTE 206 (333)
Q Consensus 127 l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~e 206 (333)
+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..++++++++|+.++++|
T Consensus 93 l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~e 172 (251)
T PRK06023 93 LAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEA 172 (251)
T ss_pred HHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcc
Q psy503 207 AKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTE 286 (333)
Q Consensus 207 Al~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (333)
|+++||||+|+|+ +++.+++.+++++|+..+|.+++.+|+.++ .. ..
T Consensus 173 A~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~-~~------------------------- 219 (251)
T PRK06023 173 AQEAGLIWKIVDE----EAVEAETLKAAEELAAKPPQALQIARDLMR---GP-RE------------------------- 219 (251)
T ss_pred HHHcCCcceeeCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hc-hh-------------------------
Confidence 9999999999995 789999999999999999999999999998 54 23
Q ss_pred cccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcc
Q psy503 287 NQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGK 325 (333)
Q Consensus 287 ~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflek 325 (333)
++++.+..|.+.+..++.++|++||+++|++|
T Consensus 220 -------~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 220 -------DILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred -------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 67888998988999999999999999999985
No 56
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-52 Score=383.17 Aligned_cols=240 Identities=25% Similarity=0.331 Sum_probs=219.6
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++|+||||+++|++|.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++.....+.....+..+..+
T Consensus 9 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (249)
T PRK05870 9 VDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGA-GKAFCAGADLTALGAAPGRPAEDGLRRIYDG 87 (249)
T ss_pred ccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCCeecCcChHHHhcccccchHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999998 7899999999987643221122334556667
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++++++|++++
T Consensus 88 ~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~ 167 (249)
T PRK05870 88 FLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFD 167 (249)
T ss_pred HHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCc-ccCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQ-YRDGQSTHSPGRDGQGSKGGES 282 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 282 (333)
|+||+++||||+++ + ++.+++.++|++|+..+|.+++.+|+.++ .... .
T Consensus 168 a~eA~~~Glv~~vv-~-----~l~~~a~~~a~~la~~~~~a~~~~K~~~~---~~~~~~--------------------- 217 (249)
T PRK05870 168 AEAAVRHGLALMVA-D-----DPVAAALELAAGPAAAPRELVLATKASMR---ATASLA--------------------- 217 (249)
T ss_pred HHHHHHcCCHHHHH-h-----hHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hccccC---------------------
Confidence 99999999999999 3 37889999999999999999999999999 6655 4
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcc
Q psy503 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGK 325 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflek 325 (333)
+++++++.|...+...+.++|++||+++|+|+
T Consensus 218 -----------~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 218 -----------QHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred -----------CHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 78999999999999999999999999999985
No 57
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=1.6e-52 Score=400.03 Aligned_cols=250 Identities=24% Similarity=0.393 Sum_probs=224.8
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC----HHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQIRSFVST 119 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~----~~~~~~~~~~ 119 (333)
.+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|+++||+|.|++++.... ......++..
T Consensus 9 ~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (342)
T PRK05617 9 VEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFRE 88 (342)
T ss_pred EECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHH
Confidence 378999999999999999999999999999999999999999999999448999999999875321 1111134444
Q ss_pred HHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcC
Q psy503 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTG 199 (333)
Q Consensus 120 ~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG 199 (333)
..+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++.| ..+++++++|
T Consensus 89 ~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a~~llltG 167 (342)
T PRK05617 89 EYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-ALGTYLALTG 167 (342)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HHHHHHHHcC
Confidence 567888999999999999999999999999999999999999999999999999999999999999877 6899999999
Q ss_pred CCCCHHHHHHcCCcceecCCCCChhHHHHH--------------------------------------------------
Q psy503 200 RLVDSTEAKSIGLVNTLTPQNPNQNAAYLA-------------------------------------------------- 229 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~~~~~~~l~~~-------------------------------------------------- 229 (333)
++++|+||+++||||+|+|+ +++.+.
T Consensus 168 ~~i~A~eA~~~GLv~~vv~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 243 (342)
T PRK05617 168 ARISAADALYAGLADHFVPS----ADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGDTVED 243 (342)
T ss_pred CCCCHHHHHHcCCcceecCH----HHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999996 556554
Q ss_pred ------------HHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHH
Q psy503 230 ------------SLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYS 297 (333)
Q Consensus 230 ------------a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (333)
+.+++++|+.++|.+++.+|++++ +.... ++++
T Consensus 244 ~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~---~~~~~--------------------------------~l~~ 288 (342)
T PRK05617 244 IIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLR---RARGL--------------------------------TLEE 288 (342)
T ss_pred HHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHH---HhcCC--------------------------------CHHH
Confidence 889999999999999999999999 66555 7999
Q ss_pred HHHHHHHHHHHHhcCccHHHHHHHHh-cc-CCCCCCCC
Q psy503 298 GMEWEGICYDRVIRTQDRVEGLKSFL-GK-YKPVYKGV 333 (333)
Q Consensus 298 ~l~~e~~~~~~~~~~~d~~egi~afl-ek-r~p~~~~~ 333 (333)
+++.|...+..++.++|++||+++|+ +| |+|+|+++
T Consensus 289 ~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p~~~~~ 326 (342)
T PRK05617 289 CLRRELRLALAMLRSPDFVEGVRAVLIDKDRNPKWSPA 326 (342)
T ss_pred HHHHHHHHHHHHHhCCchhhccceEEEcCCCCCCCCCC
Confidence 99999999999999999999999997 76 99999874
No 58
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-52 Score=391.09 Aligned_cols=246 Identities=19% Similarity=0.265 Sum_probs=213.4
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchh-hcc----c--CH--HHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH-RLT----L--NE--DQIR 114 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~-~~~----~--~~--~~~~ 114 (333)
.+++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||||. |++||+|.|+++ +.. . .. +...
T Consensus 11 ~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 89 (298)
T PRK12478 11 TAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGA-GRAFSGGYDFGGGFQHWGEAMMTDGRWDPGK 89 (298)
T ss_pred ccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCccccccccchhcccccccCchh
Confidence 478999999999999999999999999999999999999999999998 799999999986 211 0 00 0011
Q ss_pred HH---HH---HHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEecccccc-CccCChhhhhhccccc
Q psy503 115 SF---VS---TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKL-AIIPGAGGTQRLPRIV 187 (333)
Q Consensus 115 ~~---~~---~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~-Gl~p~~g~~~~L~r~i 187 (333)
.+ .. ....++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++++ +.+ .+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~--~~~--~~~v 165 (298)
T PRK12478 90 DFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT--GMW--LYRL 165 (298)
T ss_pred hhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch--hHH--HHHh
Confidence 11 01 11335667889999999999999999999999999999999999999999997 88752 233 2469
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCC
Q psy503 188 GIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQST 267 (333)
Q Consensus 188 G~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~ 267 (333)
|..++++|+++|++|+|+||+++||||+|||+ +++.+++.++|++|+..||.+++.+|++++ ...+.
T Consensus 166 G~~~A~~llltg~~i~A~eA~~~GLV~~vv~~----~~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~------ 232 (298)
T PRK12478 166 SLAKVKWHSLTGRPLTGVQAAEAELINEAVPF----ERLEARVAEVATELARIPLSQLQAQKLIVN---QAYEN------ 232 (298)
T ss_pred hHHHHHHHHHcCCccCHHHHHHcCCcceecCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHHHh------
Confidence 99999999999999999999999999999995 889999999999999999999999999998 65442
Q ss_pred CCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHH--------HHHHHHhccCCCCCCC
Q psy503 268 HSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRV--------EGLKSFLGKYKPVYKG 332 (333)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~--------egi~aflekr~p~~~~ 332 (333)
.+++++++.|...+..++.++|++ ||++||+|||+|+|.+
T Consensus 233 -------------------------~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~~ 280 (298)
T PRK12478 233 -------------------------MGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFGD 280 (298)
T ss_pred -------------------------cchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 158999999999999999999997 5999999999999976
No 59
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=1.1e-51 Score=388.52 Aligned_cols=249 Identities=28% Similarity=0.442 Sum_probs=217.4
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC------CccccCCCchhhccc-------CH-
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK------DVFCAGADLKHRLTL-------NE- 110 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g------~~F~~G~Dl~~~~~~-------~~- 110 (333)
+++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||+|.|+ ++||+|.|++++... ..
T Consensus 32 ~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~ 111 (302)
T PRK08321 32 DQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEA 111 (302)
T ss_pred CCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccc
Confidence 6889999999999999999999999999999999999999999999842 699999999875321 00
Q ss_pred H--HHHHHH-HHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEe-CCeEEeccccccCccCChhhhhhcccc
Q psy503 111 D--QIRSFV-STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA-SNVRMGLVETKLAIIPGAGGTQRLPRI 186 (333)
Q Consensus 111 ~--~~~~~~-~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias-~~a~f~~pe~~~Gl~p~~g~~~~L~r~ 186 (333)
+ ...... ..+.++...+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+++++++|+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~ 191 (302)
T PRK08321 112 DTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQ 191 (302)
T ss_pred cchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHH
Confidence 0 000111 112346677889999999999999999999999999999999 689999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCC
Q psy503 187 VGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQS 266 (333)
Q Consensus 187 iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~ 266 (333)
+|..++++++++|+.++|+||+++||||++||+ +++.+++.+++++|+..+|.+++.+|++++ ....
T Consensus 192 vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~------ 258 (302)
T PRK08321 192 VGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPH----AELETEALEWAREINGKSPTAMRMLKYAFN---LTDD------ 258 (302)
T ss_pred hCHHHHHHHHHcCCccCHHHHHHCCCceEeeCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhc------
Confidence 999999999999999999999999999999995 779999999999999999999999999998 5432
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Q psy503 267 THSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333 (333)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~~ 333 (333)
...+....|.+.+..++.++|++||+++|++||+|.|++.
T Consensus 259 ---------------------------~~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~~~~ 298 (302)
T PRK08321 259 ---------------------------GLVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDWSDF 298 (302)
T ss_pred ---------------------------ccHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCCC
Confidence 2333445678888899999999999999999999999863
No 60
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.1e-52 Score=382.10 Aligned_cols=240 Identities=30% Similarity=0.402 Sum_probs=213.4
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+++|++|.+|+.+|.++|+.++.|+++++|||+|. |++||+|.|++++.......... .....+.
T Consensus 10 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~-g~~FcaG~Dl~~~~~~~~~~~~~--~~~~~~~ 86 (254)
T PRK08259 10 NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGA-GGTFCAGADLKAVGTGRGNRLHP--SGDGPMG 86 (254)
T ss_pred ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCccCCcChHHHhcccchhhhh--hhcchhh
Confidence 68999999999999999999999999999999999999999999998 89999999999875432111111 0111122
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|.+|++++|++++|..++++++++|++|+|
T Consensus 87 ~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a 166 (254)
T PRK08259 87 PSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDA 166 (254)
T ss_pred hHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCH
Confidence 23447999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+|||+ +++.+++.++|++|+..+|.+++.+|++++ .....
T Consensus 167 ~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~~~---~~~~~----------------------- 216 (254)
T PRK08259 167 DEALAIGLANRVVPK----GQARAAAEELAAELAAFPQTCLRADRLSAL---EQWGL----------------------- 216 (254)
T ss_pred HHHHHcCCCCEeeCh----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhhcC-----------------------
Confidence 999999999999995 789999999999999999999999999998 65544
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Q psy503 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK 327 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~ 327 (333)
++++++..|...+...+. +|++||+++|++|+.
T Consensus 217 ---------~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 217 ---------PEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred ---------CHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 788999999888777777 999999999999655
No 61
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=1.2e-52 Score=384.18 Aligned_cols=242 Identities=36% Similarity=0.666 Sum_probs=229.6
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
.+++|++|+||||++.|++|.+++.+|.++|+.++.|+++++||++|. ++.||+|.|++++.....+....+.+.++.+
T Consensus 4 ~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~-~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 82 (245)
T PF00378_consen 4 IEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGG-GKAFCAGADLKEFLNSDEEEAREFFRRFQEL 82 (245)
T ss_dssp EETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEES-TSESBESB-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeec-ccccccccchhhhhccccccccccchhhccc
Confidence 379999999999999999999999999999999999999999999998 9999999999998877555677888899999
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
+.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..++++++++|++++
T Consensus 83 ~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~ 162 (245)
T PF00378_consen 83 LSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPIS 162 (245)
T ss_dssp HHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred cccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (333)
|+||+++||||+|+|+ +++.+++.+++++++..++.+++.+|+.++ +....
T Consensus 163 a~eA~~~Glv~~v~~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~---~~~~~---------------------- 213 (245)
T PF00378_consen 163 AEEALELGLVDEVVPD----EELDEEALELAKRLAAKPPSALRATKKALN---RALEQ---------------------- 213 (245)
T ss_dssp HHHHHHTTSSSEEESG----GGHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHHHS----------------------
T ss_pred hHHHHhhcceeEEcCc----hhhhHHHHHHHHHHhcCCHHHHHHHHHHHH---HHHHh----------------------
Confidence 9999999999999996 669999999999999999999999999999 66554
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcc
Q psy503 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGK 325 (333)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflek 325 (333)
.+++.++.|.+.+..++.++|++||+++|+||
T Consensus 214 ----------~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 214 ----------SLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred ----------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 78999999999999999999999999999998
No 62
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=1.6e-51 Score=383.14 Aligned_cols=243 Identities=22% Similarity=0.308 Sum_probs=219.7
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCccccCCCchhhccc--CHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLV-KDVFCAGADLKHRLTL--NEDQIRSFVSTLR 121 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~-g~~F~~G~Dl~~~~~~--~~~~~~~~~~~~~ 121 (333)
+++|++||||||+ .|+||.+|+.+|.++|++++.|+++++|||||.+ +++||+|.|++++... ..+....+.....
T Consensus 19 ~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 97 (278)
T PLN03214 19 PGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQT 97 (278)
T ss_pred CCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHH
Confidence 5899999999985 7999999999999999999999999999999984 2799999999987532 1111223434445
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCc-cCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAI-IPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl-~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
.++.+|..+||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|+.+++++|++++|+.++++++++|+
T Consensus 98 ~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~ 177 (278)
T PLN03214 98 TFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGR 177 (278)
T ss_pred HHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCC
Confidence 6788899999999999999999999999999999999999999999999999 598999999999999999999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (333)
.|+++||+++||||+|||+ +++.+++.+++++|+..+|.+++.+|+.++ +....
T Consensus 178 ~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~---~~~~~------------------- 231 (278)
T PLN03214 178 LVRPAEAKQLGLIDEVVPA----AALMEAAASAMERALKLPSAARAATKALLR---EEFSA------------------- 231 (278)
T ss_pred ccCHHHHHHcCCCcEecCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhHHH-------------------
Confidence 9999999999999999995 789999999999999999999999999999 66554
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Q psy503 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK 327 (333)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~ 327 (333)
+++++++.|...+..++.++|++||+++|+||.+
T Consensus 232 -------------~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~ 265 (278)
T PLN03214 232 -------------AWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLS 265 (278)
T ss_pred -------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999765
No 63
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.6e-51 Score=410.91 Aligned_cols=280 Identities=18% Similarity=0.195 Sum_probs=247.8
Q ss_pred cccccccCCCCcccccccccCccceEEEEeeecCCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHh
Q psy503 12 PARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQAR-------------NALNATLVEEILTAVEAIR 78 (333)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Itln~p~~~-------------Nalt~~~~~eL~~~l~~~~ 78 (333)
|+..+.++++++.....+.+-.|..+.+.+ +.+++|++||||||+++ |+|+.+|+.+|.++++.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~ 311 (546)
T TIGR03222 233 PADAKGVQLTPLERTIDEDGVRYPTVDVAI-DRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLR 311 (546)
T ss_pred CcCCCceeeeehhhhcccCCcceeeEEEEE-eccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHh
Confidence 566668888888887778776677777775 45789999999999999 9999999999999999998
Q ss_pred -cCCCceEEEEEeCCCCc-cccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe-chhhhHhh-HHHHHhCC
Q psy503 79 -GDEEVRCVLLRSLVKDV-FCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL-DGSAYGGG-LEMALACD 154 (333)
Q Consensus 79 -~d~~v~vvVl~g~~g~~-F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav-~G~a~GgG-~~Lal~cD 154 (333)
+|+++++|||||. |+. ||+|.|++.............+...+.++.+|..+||||||+| ||+|+||| ++|+++||
T Consensus 312 ~~d~~vr~vVl~g~-G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD 390 (546)
T TIGR03222 312 TNELDIGLWVFRTQ-GDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAAD 390 (546)
T ss_pred hCCCCeEEEEEEcC-CCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCc
Confidence 4599999999998 676 9999999843221211122333445668889999999999999 89999999 99999999
Q ss_pred EEEE-------eCCeEEeccccccCccCChhhhhhccccc-CHHHH--HHHHHcCCCCCHHHHHHcCCcceecCCCCChh
Q psy503 155 IRVA-------ASNVRMGLVETKLAIIPGAGGTQRLPRIV-GIPLA--KELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224 (333)
Q Consensus 155 ~ria-------s~~a~f~~pe~~~Gl~p~~g~~~~L~r~i-G~~~a--~~llltG~~isa~eAl~~Glv~~vv~~~~~~~ 224 (333)
+||+ +++++|++||+++|++|++|++++|++++ |..++ ++++++|++|+|+||+++|||++|+|+ +
T Consensus 391 ~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~----~ 466 (546)
T TIGR03222 391 RSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDD----I 466 (546)
T ss_pred eeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCc----h
Confidence 9999 89999999999999999999999999998 99888 569999999999999999999999996 7
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHH-HHHHH
Q psy503 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSG-MEWEG 303 (333)
Q Consensus 225 ~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~e~ 303 (333)
++.+++.++|++|+..+|.+++.+|+.++ ..... +++.+ +..|.
T Consensus 467 ~l~~~a~~~a~~la~~~p~a~~~~K~~l~---~~~~~--------------------------------~~~~~~~~~e~ 511 (546)
T TIGR03222 467 DWEDEIRIALEERASFSPDALTGLEANLR---FAGPE--------------------------------TMETRIFGRLT 511 (546)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHh---hcCCc--------------------------------ChhhhHHHHHH
Confidence 79999999999999999999999999999 77665 78999 99999
Q ss_pred HHHHHHhcCccHHH---HHHHHhccCCCCCCC
Q psy503 304 ICYDRVIRTQDRVE---GLKSFLGKYKPVYKG 332 (333)
Q Consensus 304 ~~~~~~~~~~d~~e---gi~aflekr~p~~~~ 332 (333)
..+..++.++|.+| |+++|+|||+|+|+.
T Consensus 512 ~~~~~~~~~~d~~e~~~g~~af~ekr~p~f~~ 543 (546)
T TIGR03222 512 AWQNWIFNRPNAVGENGALKVYGSGKKAQFDM 543 (546)
T ss_pred HHHHHHhcCCcccchhhHHHHHccCCCCCCCc
Confidence 99999999999999 999999999999974
No 64
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.2e-51 Score=398.74 Aligned_cols=248 Identities=19% Similarity=0.322 Sum_probs=220.1
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC--HHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN--EDQIRSFVSTLRY 122 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~--~~~~~~~~~~~~~ 122 (333)
+++|++||||||+++|++|.+|+.+|.++|+.++.|+++++|||+|. |++||+|+|++++.... ......+....+.
T Consensus 18 ~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 96 (379)
T PLN02874 18 KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGA-GRAFSAGGDLKMFYDGRESDDSCLEVVYRMYW 96 (379)
T ss_pred ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCccCHHHHHhhcccchHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 78999999999874321 1122233344556
Q ss_pred HHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC
Q psy503 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i 202 (333)
+...|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+++|++||+++
T Consensus 97 l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~ltG~~i 175 (379)
T PLN02874 97 LCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGEYLALTGARL 175 (379)
T ss_pred HHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHHHHHHcCCcc
Confidence 6778999999999999999999999999999999999999999999999999999999999999886 899999999999
Q ss_pred CHHHHHHcCCcceecCCCCChhHHHH---H--------------------------------------------------
Q psy503 203 DSTEAKSIGLVNTLTPQNPNQNAAYL---A-------------------------------------------------- 229 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~~~~~~~l~~---~-------------------------------------------------- 229 (333)
+|+||+++||||+|||+ +++.+ +
T Consensus 176 ~a~eA~~~GLv~~vv~~----~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~eii 251 (379)
T PLN02874 176 NGKEMVACGLATHFVPS----EKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDTVEEII 251 (379)
T ss_pred cHHHHHHcCCccEEeCH----HHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999996 33433 2
Q ss_pred --------------HHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCH
Q psy503 230 --------------SLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGR 295 (333)
Q Consensus 230 --------------a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (333)
|.++++.|+..+|.+++.+|++++ +.... ++
T Consensus 252 ~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~---~~~~~--------------------------------~l 296 (379)
T PLN02874 252 KAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIR---EGRKQ--------------------------------SL 296 (379)
T ss_pred HHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHH---HhccC--------------------------------CH
Confidence 347999999999999999999999 76655 89
Q ss_pred HHHHHHHHHHHHHHhc---CccHHHHHHHHh-cc-CCCCCCCC
Q psy503 296 YSGMEWEGICYDRVIR---TQDRVEGLKSFL-GK-YKPVYKGV 333 (333)
Q Consensus 296 ~~~l~~e~~~~~~~~~---~~d~~egi~afl-ek-r~p~~~~~ 333 (333)
+++++.|......++. ++|++||++||+ +| |+|+|+++
T Consensus 297 ~~~l~~e~~~~~~~~~~~~~~D~~EGv~AflidK~r~P~w~~~ 339 (379)
T PLN02874 297 AECLKKEFRLTMNILRSTVSDDVYEGIRALVIDKDNAPKWNPS 339 (379)
T ss_pred HHHHHHHHHHHHHHHhcCcCcchhhccceEEEcCCCCCCCCCC
Confidence 9999999888888777 999999999997 77 99999874
No 65
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=3.4e-51 Score=409.79 Aligned_cols=280 Identities=17% Similarity=0.173 Sum_probs=247.2
Q ss_pred cccccccCCCCcccccccccCccceEEEEeeecCCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHh
Q psy503 12 PARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQAR-------------NALNATLVEEILTAVEAIR 78 (333)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Itln~p~~~-------------Nalt~~~~~eL~~~l~~~~ 78 (333)
++-.+.+.++++.++....+..|+.+.+++. .+++|++||||||+++ |+||.+|+.+|.++|+.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~ 315 (550)
T PRK08184 237 PADAKGVALTPLERTIDADGLRYRHVDVEID-RAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLR 315 (550)
T ss_pred CCCCCccccccccccccCCceeeEEEEEEEE-ccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHH
Confidence 3444588888999888777877777777764 4688999999999988 6899999999999999998
Q ss_pred c-CCCceEEEEEeCCC-CccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec-hhhhHhh-HHHHHhCC
Q psy503 79 G-DEEVRCVLLRSLVK-DVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD-GSAYGGG-LEMALACD 154 (333)
Q Consensus 79 ~-d~~v~vvVl~g~~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~-G~a~GgG-~~Lal~cD 154 (333)
. |+++++|||||. | ++||+|.|++................++.++.+|..+||||||+|| |+|+||| ++|+++||
T Consensus 316 ~~d~~vr~vVltg~-G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD 394 (550)
T PRK08184 316 TNELDIGTWVLKTE-GDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAAD 394 (550)
T ss_pred hcCCCeEEEEEEcC-CCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCC
Confidence 6 799999999998 6 5999999987432211111123334556678899999999999997 9999999 99999999
Q ss_pred EEEEe-------CCeEEeccccccCccCChhhhhhcccc-cCHHHHHHH--HHcCCCCCHHHHHHcCCcceecCCCCChh
Q psy503 155 IRVAA-------SNVRMGLVETKLAIIPGAGGTQRLPRI-VGIPLAKEL--IYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224 (333)
Q Consensus 155 ~rias-------~~a~f~~pe~~~Gl~p~~g~~~~L~r~-iG~~~a~~l--lltG~~isa~eAl~~Glv~~vv~~~~~~~ 224 (333)
+||++ ++++|++||+++|++|++|++++|+++ +|..+++++ +++|++|+|+||+++||||+|+|+ +
T Consensus 395 ~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~----~ 470 (550)
T PRK08184 395 RSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDD----I 470 (550)
T ss_pred hhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccCh----H
Confidence 99999 999999999999999999999999998 699999997 589999999999999999999996 7
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHH-HHHHH
Q psy503 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSG-MEWEG 303 (333)
Q Consensus 225 ~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~e~ 303 (333)
++.+++.++|++|+..||.+++.+|++++ ..... +++++ +..|.
T Consensus 471 ~l~~~a~~~a~~ia~~~p~a~~~~K~~l~---~~~~~--------------------------------~~~~~~~~~e~ 515 (550)
T PRK08184 471 DWEDEVRIALEERASLSPDALTGMEANLR---FAGPE--------------------------------TMETRIFGRLT 515 (550)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCC--------------------------------CHHHHHHHHHH
Confidence 89999999999999999999999999999 77665 89999 99999
Q ss_pred HHHHHHhcCccHHH---HHHHHhccCCCCCCC
Q psy503 304 ICYDRVIRTQDRVE---GLKSFLGKYKPVYKG 332 (333)
Q Consensus 304 ~~~~~~~~~~d~~e---gi~aflekr~p~~~~ 332 (333)
+++..+++++|.+| |+++|+|||+|+|++
T Consensus 516 ~~~~~~~~~~d~~e~~~g~~af~ekr~~~f~~ 547 (550)
T PRK08184 516 AWQNWIFQRPNAVGEKGALKVYGTGQKAQFDW 547 (550)
T ss_pred HHHHHHhcCCcccccchHHHHhccCCCCCCCC
Confidence 99999999999999 999999999999986
No 66
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=5e-51 Score=375.74 Aligned_cols=242 Identities=19% Similarity=0.215 Sum_probs=214.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHH-H-HHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED-Q-IRSFVSTLRY 122 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~-~-~~~~~~~~~~ 122 (333)
+++|++|+||||++.|++|.+|+.+|.++|+.++ +++++|||+|. |++||+|.|++++.....+ . .......+..
T Consensus 11 ~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK07112 11 QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGL-PEVFCFGADFSAIAEKPDAGRADLIDAEPLYD 87 (255)
T ss_pred eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcC-CCCcccCcCHHHHhhccccchhhhhhHHHHHH
Confidence 7899999999999999999999999999999998 36999999998 8899999999987542111 1 1112344567
Q ss_pred HHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC
Q psy503 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i 202 (333)
++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ ..+|++++|..++++++++|+++
T Consensus 88 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~l~l~g~~~ 166 (255)
T PRK07112 88 LWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAHYMTLMTQPV 166 (255)
T ss_pred HHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHHHHHHhCCcc
Confidence 88899999999999999999999999999999999999999999999999999865 45799999999999999999999
Q ss_pred CHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy503 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (333)
+|+||+++||||+|+|+ ++ ..+.+++++|+..+|.+++.+|+.++ .. ..
T Consensus 167 ~a~eA~~~Glv~~vv~~----~~--~~~~~~a~~l~~~~p~a~~~~K~~~~---~~-~~--------------------- 215 (255)
T PRK07112 167 TAQQAFSWGLVDAYGAN----SD--TLLRKHLLRLRCLNKAAVARYKSYAS---TL-DD--------------------- 215 (255)
T ss_pred cHHHHHHcCCCceecCc----HH--HHHHHHHHHHHhCCHHHHHHHHHHHH---Hh-hh---------------------
Confidence 99999999999999996 32 24678999999999999999999998 53 32
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
.+.+.++.|.+.+..++.++|++||+++|++||+|.|+.
T Consensus 216 -----------~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~~ 254 (255)
T PRK07112 216 -----------TVAAARPAALAANIEMFADPENLRKIARYVETGKFPWEA 254 (255)
T ss_pred -----------hHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCCCC
Confidence 578889999999999999999999999999999999975
No 67
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-50 Score=369.21 Aligned_cols=243 Identities=30% Similarity=0.458 Sum_probs=218.7
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||+|. |++||+|.|++++.....+.. . ...++.++
T Consensus 11 ~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~-~-~~~~~~~~ 87 (258)
T PRK06190 11 HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGA-DPAFCAGLDLKELGGDGSAYG-A-QDALPNPS 87 (258)
T ss_pred eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCCccCCcCHHHHhcccchhh-H-HHHHHHHH
Confidence 78999999999999999999999999999999999999999999998 899999999998764322211 1 23456788
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++++++|++++|
T Consensus 88 ~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a 167 (258)
T PRK06190 88 PAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDA 167 (258)
T ss_pred HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (333)
+||+++||||+++|+ +++++++.+++++|+..+|.+++.+|+.++ .....
T Consensus 168 ~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~----------------------- 217 (258)
T PRK06190 168 ADALRAGLVTEVVPH----DELLPRARRLAASIAGNNPAAVRALKASYD---DGAAA----------------------- 217 (258)
T ss_pred HHHHHcCCCeEecCH----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhhcC-----------------------
Confidence 999999999999995 789999999999999999999999999999 65554
Q ss_pred cccccccccCHHHHHHHHHHHHHHHhcC---ccHHHHHHHHhccCCCC
Q psy503 285 TENQNREFQGRYSGMEWEGICYDRVIRT---QDRVEGLKSFLGKYKPV 329 (333)
Q Consensus 285 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~---~d~~egi~aflekr~p~ 329 (333)
+++++++.|...+..++.+ +..++...+|..+.+.+
T Consensus 218 ---------~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 256 (258)
T PRK06190 218 ---------QTGDALALEAEAARAHNRSVSPDGIAARREAVMARGRAQ 256 (258)
T ss_pred ---------CHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhhc
Confidence 7899999999999999988 55666666666665543
No 68
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=4.3e-50 Score=368.34 Aligned_cols=237 Identities=22% Similarity=0.355 Sum_probs=217.9
Q ss_pred ecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHH
Q psy503 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (333)
Q Consensus 43 ~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 122 (333)
+.+++|++|+||||++.|++|.+++.+|.+++++++.|+++++|||+|. |++||+|.|++++....... ..+ .. ++
T Consensus 10 ~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~-~~~-~~-~~ 85 (249)
T PRK07110 10 EVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGY-PNYFATGGTQEGLLSLQTGK-GTF-TE-AN 85 (249)
T ss_pred EeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCeeCCcChHHHhhccchh-hhH-hh-HH
Confidence 3478999999999999999999999999999999999999999999998 88999999999875432211 112 22 57
Q ss_pred HHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC
Q psy503 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i 202 (333)
++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++++++|+++
T Consensus 86 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~ 165 (249)
T PRK07110 86 LYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYY 165 (249)
T ss_pred HHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCcc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy503 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (333)
+++||+++||||+|+|+ +++.+++.+++++++..+|.+++.+|+.++ .....
T Consensus 166 ~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~--------------------- 217 (249)
T PRK07110 166 RGAELKKRGVPFPVLPR----AEVLEKALELARSLAEKPRHSLVLLKDHLV---ADRRR--------------------- 217 (249)
T ss_pred CHHHHHHcCCCeEEeCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---Hhhhc---------------------
Confidence 99999999999999995 779999999999999999999999999999 66554
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHH
Q psy503 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSF 322 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~af 322 (333)
+++++++.|...+..++.++|++||+++.
T Consensus 218 -----------~l~~~~~~e~~~~~~~~~~~~~~egi~~~ 246 (249)
T PRK07110 218 -----------RLPEVIEQEVAMHEKTFHQPEVKRRIESL 246 (249)
T ss_pred -----------cHHHHHHHHHHHHHHHhCCHhHHHHHHHh
Confidence 78999999999999999999999999875
No 69
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.5e-48 Score=352.14 Aligned_cols=213 Identities=30% Similarity=0.485 Sum_probs=193.6
Q ss_pred ceEEEEee--ecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHH
Q psy503 35 TQIIYHNS--PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ 112 (333)
Q Consensus 35 ~~~~~~~~--~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~ 112 (333)
+++.++.. +.+++|++|+||||++ |++|.+|+.+|.++|++++.|+++++|||||. |++||+|.|++++.....+.
T Consensus 3 ~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~ 80 (222)
T PRK05869 3 EFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGG-HEIFSAGDDMPELRTLSAQE 80 (222)
T ss_pred cchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCcCcCcCHHHHhccChhh
Confidence 34444443 3478999999999985 99999999999999999999999999999998 88999999999876543333
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHH
Q psy503 113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192 (333)
Q Consensus 113 ~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a 192 (333)
...+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++|..++
T Consensus 81 ~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a 160 (222)
T PRK05869 81 ADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRA 160 (222)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHH
Confidence 33344556788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhc
Q psy503 193 KELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSID 253 (333)
Q Consensus 193 ~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~ 253 (333)
++++++|++++|+||+++||||+++|+ +++++++.+++++|+..+|.+++.+|+.++
T Consensus 161 ~~l~ltg~~~~a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~ia~~~~~a~~~~K~~~~ 217 (222)
T PRK05869 161 KELVFSGRFFDAEEALALGLIDEMVAP----DDVYDAAAAWARRFLDGPPHALAAAKAGIS 217 (222)
T ss_pred HHHHHcCCCcCHHHHHHCCCCCEeeCc----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999995 789999999999999999999999999998
No 70
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2.4e-48 Score=375.94 Aligned_cols=243 Identities=22% Similarity=0.291 Sum_probs=216.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC----HHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQIRSFVSTL 120 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~----~~~~~~~~~~~ 120 (333)
+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|. |++||+|+|++++.... .+....++...
T Consensus 44 ~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~ 122 (401)
T PLN02157 44 SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGS-GRAFCAGGDIVSLYHLRKRGSPDAIREFFSSL 122 (401)
T ss_pred ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 78999999999875321 12223444455
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
+.+...|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+++|++||+
T Consensus 123 ~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a~~L~LTG~ 201 (401)
T PLN02157 123 YSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LGEYLGLTGL 201 (401)
T ss_pred HHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HHHHHHHcCC
Confidence 567788999999999999999999999999999999999999999999999999999999999999996 8999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (333)
+++|+||+++||||++||+ +++ +++.+++++++..+|.++..+|+.++ ... .
T Consensus 202 ~i~A~eA~~~GLv~~vVp~----~~l-~~~~~~~~~i~~~~p~av~~~k~~~~---~~~-~------------------- 253 (401)
T PLN02157 202 KLSGAEMLACGLATHYIRS----EEI-PVMEEQLKKLLTDDPSVVESCLEKCA---EVA-H------------------- 253 (401)
T ss_pred cCCHHHHHHcCCceEEeCH----hHH-HHHHHHHHHHHcCCHHHHHHHHHHHh---ccc-C-------------------
Confidence 9999999999999999996 566 67889999999999999999999998 432 2
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHH---hccCCCCC
Q psy503 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSF---LGKYKPVY 330 (333)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~af---lekr~p~~ 330 (333)
+....+..+...+..++.+++.+|++++| ++||.|.|
T Consensus 254 -------------~~~~~l~~~~~~i~~~f~~~d~~ei~~al~~~~~kr~~~w 293 (401)
T PLN02157 254 -------------PEKTGVIRRIDLLEKCFSHDTVEEIIDSLEIEAGRRKDTW 293 (401)
T ss_pred -------------CcchhHHHHHHHHHHHhcCCCHHHHHHHHHhhhcccchHH
Confidence 34456677788899999999999999999 88888887
No 71
>KOG1681|consensus
Probab=100.00 E-value=2e-48 Score=338.36 Aligned_cols=264 Identities=25% Similarity=0.425 Sum_probs=242.9
Q ss_pred ccCccceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc-
Q psy503 30 EGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL- 108 (333)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~- 108 (333)
+...++...+.+...++-|..+.||||.|.|+++..|+.|+.++|+.++.||++++|||+|. |+.||+|+|+..+...
T Consensus 14 ~~~s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~-GKhFcaGIDl~~~~~~~ 92 (292)
T KOG1681|consen 14 PDHSYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGA-GKHFCAGIDLNDMASDR 92 (292)
T ss_pred CccccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecC-CcceecccCcchhhhhh
Confidence 34446666777778899999999999999999999999999999999999999999999999 9999999998765432
Q ss_pred ----C-------HHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCCh
Q psy503 109 ----N-------EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGA 177 (333)
Q Consensus 109 ----~-------~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~ 177 (333)
. ....+.++..+++.+..|.+||||+|++|+|+|+|+|+.|..+||+|+|++++.|+.-|+.+|+..+.
T Consensus 93 ~~~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADv 172 (292)
T KOG1681|consen 93 ILQPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADV 172 (292)
T ss_pred ccccccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhch
Confidence 1 11245677788999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccC-HHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCC
Q psy503 178 GGTQRLPRIVG-IPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPG 256 (333)
Q Consensus 178 g~~~~L~r~iG-~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~ 256 (333)
|...+||+.+| ..+++++.+|++.|+|.||++.|||.+|+|+ .++++..++.+|+.|+.++|.+++.||..|.
T Consensus 173 GTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~d---k~~ll~~~l~mA~~Ia~KSpvaVqgTK~~L~--- 246 (292)
T KOG1681|consen 173 GTLNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPD---KEELLNGALPMAELIASKSPVAVQGTKENLL--- 246 (292)
T ss_pred hhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCC---HHHHHhhhHHHHHHhccCCceeeechHHHHH---
Confidence 99999999999 8899999999999999999999999999998 7899999999999999999999999999999
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC-CCC
Q psy503 257 RGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPV-YKG 332 (333)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~-~~~ 332 (333)
.+.+. +.++.|..-..+....+.++|..+.+.+-++|+||. |..
T Consensus 247 ysreh--------------------------------sv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~tfsk 291 (292)
T KOG1681|consen 247 YSREH--------------------------------SVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTVTFSK 291 (292)
T ss_pred HHhhh--------------------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Confidence 88776 889999999999999999999999999999999887 753
No 72
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=9.6e-47 Score=390.83 Aligned_cols=266 Identities=30% Similarity=0.456 Sum_probs=220.7
Q ss_pred EeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---CHHHHHHH
Q psy503 40 HNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSF 116 (333)
Q Consensus 40 ~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~~~~~~~~ 116 (333)
.+...+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++... ..+....+
T Consensus 9 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 87 (715)
T PRK11730 9 QVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSA-KDAFIVGADITEFLSLFAAPEEELSQW 87 (715)
T ss_pred EEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECC-CCccccCcCHHHHhhhccCCHHHHHHH
Confidence 3333478999999999999999999999999999999999999999999998 7899999999987542 22233455
Q ss_pred HHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHH
Q psy503 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELI 196 (333)
Q Consensus 117 ~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~ll 196 (333)
...++.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|++|+
T Consensus 88 ~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~ll 167 (715)
T PRK11730 88 LHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWI 167 (715)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHH
Confidence 56677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhc------------CHH---------HHHHHHHHhcCC
Q psy503 197 YTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHN------------GPI---------AVRMAKRSIDGP 255 (333)
Q Consensus 197 ltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~------------~~~---------a~~~~K~~l~~~ 255 (333)
++|++++|+||+++||||+|||+ +++++++.++|++|+.. +|. +++.+|+.++
T Consensus 168 ltG~~~~A~eA~~~GLv~~vv~~----~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~a~~~~~~~~~~~~~k~~~~-- 241 (715)
T PRK11730 168 AAGKDVRAEDALKVGAVDAVVAP----EKLQEAALALLKQAIAGKLDWKARRQPKLEPLKLSKIEAMMSFTTAKGMVA-- 241 (715)
T ss_pred HcCCcCCHHHHHHCCCCeEecCH----HHHHHHHHHHHHHHhhcCCccccccCcccccccccchhHHHHHHHHHHHHH--
Confidence 99999999999999999999995 78999999999999965 454 4577776542
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Q psy503 256 GRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK 327 (333)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~ 327 (333)
+... .+.|.+ .............+++++++.|.+.+..++.++|++||+++|+++|.
T Consensus 242 -~~~~------~~~pa~--------~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~ 298 (715)
T PRK11730 242 -QKAG------KHYPAP--------MTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQY 298 (715)
T ss_pred -Hhhc------cCCccH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 1100 000100 00000000011127899999999999999999999999999999765
No 73
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.9e-46 Score=347.47 Aligned_cols=229 Identities=26% Similarity=0.387 Sum_probs=200.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH--------------
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-------------- 110 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~-------------- 110 (333)
+++|++||||||+++|++|.+|+.+|.+++++++.|+++++|||||. |++||+|.|++++.....
T Consensus 11 ~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (288)
T PRK08290 11 AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGA-GKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWD 89 (288)
T ss_pred eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCccccCCCccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999999999999998 899999999997632100
Q ss_pred -------H-HHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhh
Q psy503 111 -------D-QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQR 182 (333)
Q Consensus 111 -------~-~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~ 182 (333)
. ........+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |+ .+.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~~-~~~~~ 167 (288)
T PRK08290 90 GATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-PG-VEYFA 167 (288)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-Cc-chHHH
Confidence 0 01112234566778899999999999999999999999999999999999999999999998 44 34567
Q ss_pred cccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCccc
Q psy503 183 LPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYR 262 (333)
Q Consensus 183 L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~ 262 (333)
+++++|+.++++|++||+.|+|+||+++||||++||+ +++.+++.+++++|+..++.+++.+|+.++ +..+.
T Consensus 168 l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~~~---~~~~~- 239 (288)
T PRK08290 168 HPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPR----DELEAETLELARRIAAMPPFGLRLTKRAVN---QTLDA- 239 (288)
T ss_pred HHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHHhh-
Confidence 8999999999999999999999999999999999995 789999999999999999999999999998 65442
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHh-cCcc
Q psy503 263 DGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVI-RTQD 314 (333)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~-~~~d 314 (333)
.++++++..|.......+ ++++
T Consensus 240 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 240 ------------------------------QGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred ------------------------------ccHHHHHHHHHHHHHHccccchh
Confidence 158899999988888777 6664
No 74
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.5e-45 Score=343.38 Aligned_cols=256 Identities=24% Similarity=0.328 Sum_probs=208.6
Q ss_pred ccccccCccceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEeCCCCccccCC
Q psy503 26 SVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRG-----DEEVRCVLLRSLVKDVFCAGA 100 (333)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~-----d~~v~vvVl~g~~g~~F~~G~ 100 (333)
+++.. +++..+.+.++ .+++|++|+|| |+++|+||.+|+.+|.+++++++. |+++++|||+|.+|++||+|.
T Consensus 7 ~~~~~-~~~~~~~i~~e-~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~ 83 (287)
T PRK08788 7 PFPEA-GELSQLRVYYE-EERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGG 83 (287)
T ss_pred ccccc-cccCceEEEEE-ccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCc
Confidence 34443 34666666655 47899999996 989999999999999999999998 899999999998678999999
Q ss_pred Cchhhccc----CHHHHHHHHHHHHHHHHHHh---cCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCc
Q psy503 101 DLKHRLTL----NEDQIRSFVSTLRYMTCQLE---SIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAI 173 (333)
Q Consensus 101 Dl~~~~~~----~~~~~~~~~~~~~~l~~~l~---~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl 173 (333)
|++++... ..+....+...+.+.+.++. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|+
T Consensus 84 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl 163 (287)
T PRK08788 84 DLALFAELIRAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNL 163 (287)
T ss_pred CHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCc
Confidence 99987431 11111122222233333333 799999999999999999999999999999999999999999999
Q ss_pred cCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhc
Q psy503 174 IPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSID 253 (333)
Q Consensus 174 ~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~ 253 (333)
+|++|++++|++++|+.++++++++|+.++|+||+++||||+++|+ +++.+++.+++++|+.. |.+...+|+..+
T Consensus 164 ~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~----~el~~~a~~~a~~ia~~-~~~~~a~k~~~~ 238 (287)
T PRK08788 164 FPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVED----GQGEAAVRTFIRKSKRK-LNGWRAMLRARR 238 (287)
T ss_pred CCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCc----hHHHHHHHHHHHHHhcC-ccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999996 67899999999999976 666666666665
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcC-ccHHHHHHHHhc
Q psy503 254 GPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRT-QDRVEGLKSFLG 324 (333)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~-~d~~egi~afle 324 (333)
..... ++++.++.|...+..+++. +..++-|..|..
T Consensus 239 ---~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK08788 239 ---RVNPL--------------------------------SLEELMDITEIWVDAALQLEEKDLRTMERLVR 275 (287)
T ss_pred ---hhccC--------------------------------CHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 33333 6788888887777765544 556777777754
No 75
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.2e-45 Score=382.54 Aligned_cols=249 Identities=28% Similarity=0.520 Sum_probs=220.9
Q ss_pred EEeeecCCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC-HHHHHHH
Q psy503 39 YHNSPERPGIVELCMNRP-QARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-EDQIRSF 116 (333)
Q Consensus 39 ~~~~~~~~~v~~Itln~p-~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~-~~~~~~~ 116 (333)
++++..+++|++|||||| ++.|++|.+|+.+|.+++++++.|+++++|||+|.++++||+|.|++++.... .+....+
T Consensus 7 ~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~ 86 (708)
T PRK11154 7 FTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEAL 86 (708)
T ss_pred EEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHH
Confidence 444545789999999999 68999999999999999999999999999999997668999999999875432 2223344
Q ss_pred HHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC--eEEeccccccCccCChhhhhhcccccCHHHHHH
Q psy503 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKE 194 (333)
Q Consensus 117 ~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~--a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~ 194 (333)
...++.++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|..+|++
T Consensus 87 ~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~ 166 (708)
T PRK11154 87 ARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALD 166 (708)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHH
Confidence 556677889999999999999999999999999999999999987 489999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHH-------------HhhcCHH------------------
Q psy503 195 LIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAED-------------IAHNGPI------------------ 243 (333)
Q Consensus 195 llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~-------------ia~~~~~------------------ 243 (333)
|+++|++++|+||+++||||+++|+ +++.+++.++|++ ++..+|.
T Consensus 167 llltG~~i~a~eA~~~GLv~~vv~~----~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 242 (708)
T PRK11154 167 MILTGKQLRAKQALKLGLVDDVVPH----SILLEVAVELAKKGKPARRPLPVRERLLEGNPLGRALLFKQARKKTLAKTQ 242 (708)
T ss_pred HHHhCCcCCHHHHHHCCCCcEecCh----HHHHHHHHHHHHhcCCccCcCCchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999995 7789999999988 4566553
Q ss_pred ----HHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHH
Q psy503 244 ----AVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGL 319 (333)
Q Consensus 244 ----a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi 319 (333)
|++.+|++++ .+... ++++++..|.+.|..++.|+|+++++
T Consensus 243 g~~~A~~~~k~~i~---~~~~~--------------------------------~~~~~l~~E~~~~~~~~~s~~~~~~~ 287 (708)
T PRK11154 243 GNYPAPERILDVVR---TGLEK--------------------------------GMSSGYEAEARAFGELAMTPESAALR 287 (708)
T ss_pred cCChHHHHHHHHHH---HHhcC--------------------------------CHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6888888888 66555 79999999999999999999999999
Q ss_pred HHHhccC
Q psy503 320 KSFLGKY 326 (333)
Q Consensus 320 ~aflekr 326 (333)
++|+.++
T Consensus 288 ~aF~~~~ 294 (708)
T PRK11154 288 SIFFATT 294 (708)
T ss_pred HHHHHHH
Confidence 9998643
No 76
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=7.8e-45 Score=351.39 Aligned_cols=281 Identities=20% Similarity=0.252 Sum_probs=210.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc----CHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL----NEDQIRSFVSTL 120 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~----~~~~~~~~~~~~ 120 (333)
++++++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|. |++||+|+|++.+... ..+....++...
T Consensus 49 ~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~ 127 (407)
T PLN02851 49 RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGS-GRAFCSGADVVSLYHLINEGNVEECKLFFENL 127 (407)
T ss_pred ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999998 7999999999987532 123345566777
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
+.+...|..+|||+||+|||+|+|||+.|+++||+||++++++|++||+++|++|+.|++++|+|++|. .+.+|++||+
T Consensus 128 ~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~g~~L~LTG~ 206 (407)
T PLN02851 128 YKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LGEYLALTGQ 206 (407)
T ss_pred HHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-HHHHHHHhCC
Confidence 888889999999999999999999999999999999999999999999999999999999999999998 5999999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHH------------------HhcCCCCCCccc
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKR------------------SIDGPGRGTQYR 262 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~------------------~l~~~~~~~~~~ 262 (333)
+++|+||+++||+|+++|+ +++ +.+.+.+.++...++.++..+-+ .|+.+.......
T Consensus 207 ~i~a~eA~~~GLa~~~v~~----~~l-~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~sv~ 281 (407)
T PLN02851 207 KLNGVEMIACGLATHYCLN----ARL-PLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDTVE 281 (407)
T ss_pred cCCHHHHHHCCCceeecCH----hhH-HHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999996 333 44444444443333333322111 111000000000
Q ss_pred CC-C---CCCCCCCCCCCCC-------C--CCCCCcccc--cccccCHHHHHHHHHHHHHHHh---cCccHHHHHHHHhc
Q psy503 263 DG-Q---STHSPGRDGQGSK-------G--GESKGTENQ--NREFQGRYSGMEWEGICYDRVI---RTQDRVEGLKSFLG 324 (333)
Q Consensus 263 ~~-~---~~~~~~~~~~~~~-------~--~~~~~~~~~--~~~~~~~~~~l~~e~~~~~~~~---~~~d~~egi~afle 324 (333)
++ . ...+.....|... + ...+++..+ .+...++.+.+..|+.....++ .++||.|||+|.|-
T Consensus 282 ~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~LI 361 (407)
T PLN02851 282 EIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARLV 361 (407)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhc
Confidence 00 0 0000000111111 0 022233222 1122389999999999998887 48999999999976
Q ss_pred --cCCCCCCC
Q psy503 325 --KYKPVYKG 332 (333)
Q Consensus 325 --kr~p~~~~ 332 (333)
.++|+|+.
T Consensus 362 DKd~~P~W~p 371 (407)
T PLN02851 362 DKDFAPKWDP 371 (407)
T ss_pred CCCCCCCCCC
Confidence 56899973
No 77
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-45 Score=333.19 Aligned_cols=205 Identities=17% Similarity=0.259 Sum_probs=187.0
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+++|++|||||| +.|++|.+++.+|.++++.++ +++++|||+|. |++||+|.|++++... .+....+...+.+++
T Consensus 10 ~~~v~~itln~~-~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~-g~~F~~G~Dl~~~~~~-~~~~~~~~~~~~~l~ 84 (229)
T PRK06213 10 EDGVATITLDDG-KVNALSPAMIDALNAALDQAE--DDRAVVVITGQ-PGIFSGGFDLKVMTSG-AQAAIALLTAGSTLA 84 (229)
T ss_pred cCCEEEEEeCCC-CCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCC-CCceEcCcCHHHHhcc-hHhHHHHHHHHHHHH
Confidence 789999999998 579999999999999999998 45799999998 8999999999987643 233445566778889
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC-eEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~-a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
.++..+||||||+|||+|+|||++|+++|||||++++ ++|++||+++|++|+.++..++++++|...+++++++|++++
T Consensus 85 ~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~ 164 (229)
T PRK06213 85 RRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVINAEMFD 164 (229)
T ss_pred HHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHcCcccC
Confidence 9999999999999999999999999999999999999 999999999999888888888999999999999999999999
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcc
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQY 261 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~ 261 (333)
|+||+++||||+|+|+ +++.+++.+++++++..+|.+++.+|+.++ .....
T Consensus 165 a~eA~~~Glv~~vv~~----~~l~~~a~~~a~~la~~~~~a~~~~K~~l~---~~~~~ 215 (229)
T PRK06213 165 PEEAVAAGFLDEVVPP----EQLLARAQAAARELAGLNMGAHAATKLKVR---AAALE 215 (229)
T ss_pred HHHHHHCCCceeccCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HHHHH
Confidence 9999999999999985 789999999999999999999999999999 65443
No 78
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-45 Score=344.56 Aligned_cols=212 Identities=25% Similarity=0.333 Sum_probs=185.7
Q ss_pred ceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCH----
Q psy503 35 TQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE---- 110 (333)
Q Consensus 35 ~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~---- 110 (333)
+.+.++. +++|++||||||+++|++|.+|+.+|.++|++++.|+++++|||+|. |++||+|.|++++.....
T Consensus 10 ~~v~~e~---~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~-G~~FcaG~Dl~~~~~~~~~~~~ 85 (302)
T PRK08272 10 KTMTYEV---TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGA-GKGFCAGYDLSAYAEGSSSGGG 85 (302)
T ss_pred CeEEEEe---ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcC-CCCcccCcCHHHHhhccccccc
Confidence 3445443 68999999999999999999999999999999999999999999998 799999999998743211
Q ss_pred -------------------HH--HHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEecccc
Q psy503 111 -------------------DQ--IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVET 169 (333)
Q Consensus 111 -------------------~~--~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~ 169 (333)
.. ...++..+++++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~ 165 (302)
T PRK08272 86 GGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPT 165 (302)
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcch
Confidence 00 012345566788889999999999999999999999999999999999999999999
Q ss_pred ccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHH
Q psy503 170 KLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAK 249 (333)
Q Consensus 170 ~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K 249 (333)
++|.+|+. ..+++++|..+|++|+++|++|+|+||+++||||+++|+ +++.+++.++|++|+..+|.+++.+|
T Consensus 166 ~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~----~~l~~~a~~la~~ia~~~~~a~~~~K 238 (302)
T PRK08272 166 RVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPP----EELDERTERLVERIAAVPVNQLAMVK 238 (302)
T ss_pred hcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCH----HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 98666653 256778999999999999999999999999999999995 88999999999999999999999999
Q ss_pred HHhcCCCCCCc
Q psy503 250 RSIDGPGRGTQ 260 (333)
Q Consensus 250 ~~l~~~~~~~~ 260 (333)
++++ +.++
T Consensus 239 ~~l~---~~~~ 246 (302)
T PRK08272 239 LAVN---SALL 246 (302)
T ss_pred HHHH---HHHH
Confidence 9998 6543
No 79
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=1e-44 Score=349.47 Aligned_cols=278 Identities=22% Similarity=0.322 Sum_probs=221.9
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC----HHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQIRSFVSTL 120 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~----~~~~~~~~~~~ 120 (333)
+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|. |++||+|+|++++.... ......++...
T Consensus 16 ~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~-G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~ 94 (381)
T PLN02988 16 KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGH-GRAFCAGGDVAAVVRDIEQGNWRLGANFFSDE 94 (381)
T ss_pred ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECC-CCCcccCcCHHHHHhhhcccchhHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999 68999999999875211 11122333334
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
+.+...+..+|||+||+|||+|+|||+.|+++||+||++++++|++||+++|++|+.|++++|+|++|. .+++|++||+
T Consensus 95 ~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~~~l~LTG~ 173 (381)
T PLN02988 95 YMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVGLTGA 173 (381)
T ss_pred HHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-HHHHHHHcCC
Confidence 456678899999999999999999999999999999999999999999999999999999999999997 6899999999
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccC--------------C-C
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRD--------------G-Q 265 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~--------------~-~ 265 (333)
+++|+||+++||||++||+ +++.+.+.+++ .++..+|.++..+|+.+. ......+ + .
T Consensus 174 ~i~a~eA~~~GLv~~vv~~----~~l~~~~~~la-~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~I~~~f~~~ 245 (381)
T PLN02988 174 RLDGAEMLACGLATHFVPS----TRLTALEADLC-RIGSNDPTFASTILDAYT---QHPRLKPQSAYHRLDVIDRCFSRR 245 (381)
T ss_pred CCCHHHHHHcCCceEecCH----hHHHHHHHHHH-HhhccCHHHHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhCCC
Confidence 9999999999999999996 67888888887 777788888988888876 2211000 0 0
Q ss_pred -------C-CCCC--CCCCCCCC-------C--CCCCCcccc--cccccCHHHHHHHHHHHHHHHhc---CccHHHHHHH
Q psy503 266 -------S-THSP--GRDGQGSK-------G--GESKGTENQ--NREFQGRYSGMEWEGICYDRVIR---TQDRVEGLKS 321 (333)
Q Consensus 266 -------~-~~~~--~~~~~~~~-------~--~~~~~~~~~--~~~~~~~~~~l~~e~~~~~~~~~---~~d~~egi~a 321 (333)
+ ..+- ....|... + ...+++..+ .+...++.+.+..|+....+++. ++||.|||+|
T Consensus 246 ~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA 325 (381)
T PLN02988 246 TVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRA 325 (381)
T ss_pred CHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHH
Confidence 0 0000 01112111 0 122333322 22234899999999999999988 6999999999
Q ss_pred Hhc-c-CCCCCCC
Q psy503 322 FLG-K-YKPVYKG 332 (333)
Q Consensus 322 fle-k-r~p~~~~ 332 (333)
.|- | +.|+|+.
T Consensus 326 ~LiDKd~~P~W~p 338 (381)
T PLN02988 326 ILVDKDKNPKWEP 338 (381)
T ss_pred HhcCCCCCCCCCC
Confidence 976 3 6899974
No 80
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=1.2e-44 Score=374.45 Aligned_cols=244 Identities=28% Similarity=0.531 Sum_probs=212.7
Q ss_pred eecCCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc-CHHHHHHHHHH
Q psy503 42 SPERPGIVELCMNRP-QARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL-NEDQIRSFVST 119 (333)
Q Consensus 42 ~~~~~~v~~Itln~p-~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~-~~~~~~~~~~~ 119 (333)
...+++|++|||||| ++.|+||.+|+.+|.++|++++.|+++++|||++..+++||+|.|++++... .......+...
T Consensus 5 ~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 84 (699)
T TIGR02440 5 TVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQ 84 (699)
T ss_pred EEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHH
Confidence 345789999999999 6899999999999999999999999999999754338899999999987532 12233444556
Q ss_pred HHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC--eEEeccccccCccCChhhhhhcccccCHHHHHHHHH
Q psy503 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIY 197 (333)
Q Consensus 120 ~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~--a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~lll 197 (333)
++.++..+.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++|..++++|++
T Consensus 85 ~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~lll 164 (699)
T TIGR02440 85 GQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMIL 164 (699)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHH
Confidence 778889999999999999999999999999999999999986 799999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHH-------------HHhhcCHHHHH------------------
Q psy503 198 TGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAE-------------DIAHNGPIAVR------------------ 246 (333)
Q Consensus 198 tG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~-------------~ia~~~~~a~~------------------ 246 (333)
+|+.++|+||+++||||+++|+ +++++++.++|+ .++..+|.+.+
T Consensus 165 tG~~~~a~eA~~~GLV~~vv~~----~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~~~~ 240 (699)
T TIGR02440 165 TGKQLRAKQALKLGLVDDVVPQ----SILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQGNY 240 (699)
T ss_pred cCCcCCHHHHHhCCCCcEecCh----hHHHHHHHHHHHhCCCCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcccCC
Confidence 9999999999999999999995 778999999998 57777666644
Q ss_pred ----HHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHH
Q psy503 247 ----MAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSF 322 (333)
Q Consensus 247 ----~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~af 322 (333)
.+|++++ .+... +++++++.|.+.|..++.|+|+++++++|
T Consensus 241 ~a~~~~~~~i~---~~~~~--------------------------------~~~~~l~~E~~~~~~~~~s~~~~~~~~~f 285 (699)
T TIGR02440 241 PAAERILDVVR---QGLAQ--------------------------------GMQKGLDAEARAFGELVMTPESAALRSIF 285 (699)
T ss_pred hhHHHHHHHHH---HHhcC--------------------------------CHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3334444 33333 89999999999999999999999999999
Q ss_pred hc
Q psy503 323 LG 324 (333)
Q Consensus 323 le 324 (333)
+-
T Consensus 286 ~~ 287 (699)
T TIGR02440 286 FA 287 (699)
T ss_pred HH
Confidence 76
No 81
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=1.2e-43 Score=334.68 Aligned_cols=205 Identities=20% Similarity=0.328 Sum_probs=179.3
Q ss_pred CCCE--EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---CHHHHHHHHHH
Q psy503 45 RPGI--VELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVST 119 (333)
Q Consensus 45 ~~~v--~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~~~~~~~~~~~ 119 (333)
.+|+ ++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.++++||+|.|++++... .......+.+.
T Consensus 33 ~~~~~~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~ 112 (360)
T TIGR03200 33 VPGLYNAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRL 112 (360)
T ss_pred cCceEEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHH
Confidence 3454 459999999999999999999999999999999999999999944799999999987542 22233445566
Q ss_pred HHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcC
Q psy503 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTG 199 (333)
Q Consensus 120 ~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG 199 (333)
+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++++|
T Consensus 113 ~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltG 192 (360)
T TIGR03200 113 FNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLC 192 (360)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhC
Confidence 67888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHcCCcceecCCCCChhHH------------HHHHHHHHHHHhhcCHH--HHHHHHHHhc
Q psy503 200 RLVDSTEAKSIGLVNTLTPQNPNQNAA------------YLASLRIAEDIAHNGPI--AVRMAKRSID 253 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~~~~~~~l------------~~~a~~~a~~ia~~~~~--a~~~~K~~l~ 253 (333)
++++|+||+++||||+|+|+ .++ ++.+.++++.+...++. ++...|.+++
T Consensus 193 e~~sA~EA~~~GLVd~VVp~----~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 256 (360)
T TIGR03200 193 EPWSAHKAKRLGIIMDVVPA----LKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIK 256 (360)
T ss_pred CcCcHHHHHHcCChheecCc----hhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHh
Confidence 99999999999999999997 344 45555667777766665 7777787777
No 82
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=6.3e-43 Score=318.82 Aligned_cols=205 Identities=20% Similarity=0.310 Sum_probs=179.3
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEeCCCCccccCCCchhhccc--CHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVR-CVLLRSLVKDVFCAGADLKHRLTL--NEDQIRSFVSTL 120 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~-vvVl~g~~g~~F~~G~Dl~~~~~~--~~~~~~~~~~~~ 120 (333)
.+++|++|+||||++ |++|.+|+.+|.+++++++.|++++ +||++|. |++||+|.|++++... ..+....+...+
T Consensus 6 ~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 83 (239)
T PLN02267 6 KRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAE-GKFFSNGFDLAWAQAAGSAPSRLHLMVAKL 83 (239)
T ss_pred ecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCC-CCceeCCcCHHHHhccccCHHHHHHHHHHH
Confidence 378999999999985 9999999999999999999998875 7777887 8899999999986532 122223345567
Q ss_pred HHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEe-CCeEEeccccccCccCChhhhhhcccccCHHHH-HHHHHc
Q psy503 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA-SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA-KELIYT 198 (333)
Q Consensus 121 ~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias-~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a-~~lllt 198 (333)
++++..+.++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++++.++..+|++++|..++ ++++++
T Consensus 84 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~lllt 163 (239)
T PLN02267 84 RPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLR 163 (239)
T ss_pred HHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHc
Confidence 788899999999999999999999999999999999998 568999999999997444457799999999999 699999
Q ss_pred CCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhc--CHHHHHHHHHHhc
Q psy503 199 GRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHN--GPIAVRMAKRSID 253 (333)
Q Consensus 199 G~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~--~~~a~~~~K~~l~ 253 (333)
|++|+|+||+++||||+++|+ .+++.+++.++|++|+.. ++.++..+|+.++
T Consensus 164 G~~~~a~eA~~~Glv~~vv~~---~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~ 217 (239)
T PLN02267 164 AAKLTAEEAVEMGIVDSAHDS---AEETVEAAVRLGEELAARKWNGEVYASIRKSLL 217 (239)
T ss_pred CCcCCHHHHHHCCCcceecCC---HHHHHHHHHHHHHHHhhccCcccHHHHHHHHHH
Confidence 999999999999999999985 467999999999999987 5578899999988
No 83
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=8.3e-43 Score=360.88 Aligned_cols=267 Identities=28% Similarity=0.415 Sum_probs=215.0
Q ss_pred EEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhccc---CHHHHHH
Q psy503 39 YHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRS 115 (333)
Q Consensus 39 ~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~---~~~~~~~ 115 (333)
+.+...+++|++|+||||++.|+||.+|+.+|.++|++++.|+++++|||+|. +++||+|.|++++... ..+....
T Consensus 8 i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~ 86 (714)
T TIGR02437 8 IQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSG-KDAFIVGADITEFLGLFALPDAELIQ 86 (714)
T ss_pred EEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCccccCcCHHHHhhcccCCHHHHHH
Confidence 34444578999999999999999999999999999999999999999999998 7899999999987542 2233344
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHH
Q psy503 116 FVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKEL 195 (333)
Q Consensus 116 ~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~l 195 (333)
+.+..++++.+|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|
T Consensus 87 ~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~l 166 (714)
T TIGR02437 87 WLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEW 166 (714)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence 55667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHH----------H-----------HHHHHHHhcC
Q psy503 196 IYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPI----------A-----------VRMAKRSIDG 254 (333)
Q Consensus 196 lltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~----------a-----------~~~~K~~l~~ 254 (333)
+++|++++|+||+++||||+++|+ +++.+++.++++++....+. . ...+++.+.
T Consensus 167 lltG~~~~A~eA~~~GLvd~vv~~----~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 241 (714)
T TIGR02437 167 IASGKENRAEDALKVGAVDAVVTA----DKLGAAALQLLKDAINGKLDWKAKRQPKLEPLKLSKIEAMMSFTTAKGMVA- 241 (714)
T ss_pred HHcCCcCCHHHHHHCCCCcEeeCh----hHHHHHHHHHHHHHhhcCCcccccCCCCcccccccchHHHHHHHHHHHHHH-
Confidence 999999999999999999999995 77899999999775432100 0 111111011
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Q psy503 255 PGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK 327 (333)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~ 327 (333)
+. ....+++....+..+..+...++++++..|.+.|.+++.|++.++.+..|+.+|.
T Consensus 242 --~~--------------~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~ 298 (714)
T TIGR02437 242 --QV--------------AGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQY 298 (714)
T ss_pred --Hh--------------hcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHh
Confidence 00 0111122211111122222237899999999999999999999999999987544
No 84
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=1e-43 Score=306.85 Aligned_cols=256 Identities=30% Similarity=0.465 Sum_probs=212.8
Q ss_pred ccceEEEEeeecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC--CCCccccCCCchhhcccC-
Q psy503 33 KLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL--VKDVFCAGADLKHRLTLN- 109 (333)
Q Consensus 33 ~~~~~~~~~~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~--~g~~F~~G~Dl~~~~~~~- 109 (333)
+|+-|.|+- .-++|+.|++|||+++|++.+..+.||.++|..+..|+++.+|||||. |+.+||+|.|-+......
T Consensus 16 ~y~dI~Y~~--~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~g 93 (282)
T COG0447 16 GYEDITYEK--SVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGG 93 (282)
T ss_pred CcceeEEee--ccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCC
Confidence 355555553 357999999999999999999999999999999999999999999974 789999999987543311
Q ss_pred --HHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhccccc
Q psy503 110 --EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIV 187 (333)
Q Consensus 110 --~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~i 187 (333)
.+..... -...++-+.|+.+||||||.|+|.++|||-.|-+.||+.||+++++|+....++|-+-++.++..|.|.+
T Consensus 94 Y~~d~~~~r-LnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~V 172 (282)
T COG0447 94 YVDDDGIPR-LNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV 172 (282)
T ss_pred ccCCccCcc-cchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHh
Confidence 0110000 1223455678899999999999999999999999999999999999999999999998888888999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCC
Q psy503 188 GIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQST 267 (333)
Q Consensus 188 G~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~ 267 (333)
|.++|+++.+.++.++|+||+++|+||.||| .++|.+++.+|+++|..+||.|++..|.+++ ...+
T Consensus 173 GqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp----~~~LE~e~v~W~~E~l~kSP~AlR~LK~Afn---ad~D------- 238 (282)
T COG0447 173 GQKKAREIWFLCRQYDAEEALDMGLVNTVVP----HADLEKETVQWAREMLAKSPTALRMLKAAFN---ADCD------- 238 (282)
T ss_pred hhhhhHHhhhhhhhccHHHHHhcCceeeecc----HHHHHHHHHHHHHHHHhcChHHHHHHHHHhc---CCCc-------
Confidence 9999999999999999999999999999999 4889999999999999999999999999998 3322
Q ss_pred CCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCC
Q psy503 268 HSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331 (333)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~ 331 (333)
.+.-.-++......-...+++.+||..||+|||+|.|.
T Consensus 239 --------------------------GlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf~ 276 (282)
T COG0447 239 --------------------------GLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDFS 276 (282)
T ss_pred --------------------------hhhHHHHhcccceEEEEechhhhhhHHHHhhccCCChH
Confidence 11111111122222345899999999999999999985
No 85
>KOG0016|consensus
Probab=100.00 E-value=1.7e-41 Score=301.36 Aligned_cols=245 Identities=23% Similarity=0.310 Sum_probs=223.8
Q ss_pred eecCCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHH-------HH
Q psy503 42 SPERPGIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED-------QI 113 (333)
Q Consensus 42 ~~~~~~v~~Itln-~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~-------~~ 113 (333)
...++++..|.+| ||++.|+++.+++.++.++|..+..|+++..+|++|. |++||+|.|+..+.....+ ..
T Consensus 11 v~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~-G~~f~sG~Df~~~~~~~~~d~~~~~~~~ 89 (266)
T KOG0016|consen 11 VTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSN-GSYFCSGLDFSPFAKALDDDANEESDKA 89 (266)
T ss_pred EEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecC-ccEEeeccccchhhhcCCCcccccchhh
Confidence 3458999999999 9999999999999999999999999999999999998 9999999999887643221 12
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHH
Q psy503 114 RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAK 193 (333)
Q Consensus 114 ~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~ 193 (333)
..+...+..+...+.++|||+||.|||+|+|.|+.+.-.||+++|+|+++|..|++++|.+|++++++.||+++|...|.
T Consensus 90 ~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~ 169 (266)
T KOG0016|consen 90 SKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGSASAN 169 (266)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhchhhHH
Confidence 23334455688899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCC
Q psy503 194 ELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRD 273 (333)
Q Consensus 194 ~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~ 273 (333)
+|++.|++++|+||.+.|||++|++. +++.++++.-+++++..+|.+++..|++++ .....
T Consensus 170 E~ll~~~kltA~Ea~~~glVskif~~----~tf~~~v~~~ikq~s~l~p~sl~~~K~L~r---s~~k~------------ 230 (266)
T KOG0016|consen 170 EMLLFGEKLTAQEACEKGLVSKIFPA----ETFNEEVLKKIKQYSKLSPESLLGMKKLLR---SNIKE------------ 230 (266)
T ss_pred HHHHhCCcccHHHHHhcCchhhhcCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HHHHH------------
Confidence 99999999999999999999999996 889999999999999999999999999999 65554
Q ss_pred CCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Q psy503 274 GQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKY 326 (333)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr 326 (333)
.+..+.+.|.......|.++|+.+++..|+.|.
T Consensus 231 --------------------~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 231 --------------------ELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred --------------------HHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 789999999999999999999999999998864
No 86
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=9.2e-41 Score=346.44 Aligned_cols=263 Identities=25% Similarity=0.417 Sum_probs=206.4
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEeCCCCccccCCCchhhccc-CHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCV-LLRSLVKDVFCAGADLKHRLTL-NEDQIRSFVSTLR 121 (333)
Q Consensus 45 ~~~v~~Itln~p~-~~Nalt~~~~~eL~~~l~~~~~d~~v~vv-Vl~g~~g~~F~~G~Dl~~~~~~-~~~~~~~~~~~~~ 121 (333)
+++|++||||||+ +.|+||.+++.+|.++|+.++.|+++++| |++|. |++||+|.|++++... ..+....+...++
T Consensus 20 ~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 98 (737)
T TIGR02441 20 KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGK-PGSFVAGADIQMIAACKTAQEVTQLSQEGQ 98 (737)
T ss_pred ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECC-CCcceeCcCHHHHhccCChHHHHHHHHHHH
Confidence 7899999999998 68999999999999999999999999965 56887 8899999999998632 2233445556678
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC--eEEeccccccCccCChhhhhhcccccCHHHHHHHHHcC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTG 199 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~--a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG 199 (333)
+++.++.++||||||+|||+|+|||++|+|+||||||+++ ++|++||+++|++|++|++++|+|++|..+|++++++|
T Consensus 99 ~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG 178 (737)
T TIGR02441 99 EMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTG 178 (737)
T ss_pred HHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcC
Confidence 8999999999999999999999999999999999999987 58999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHcCCcceecCC-CCC--------hhHHHHHHHHHHHHHhhcCHH------------------------HHH
Q psy503 200 RLVDSTEAKSIGLVNTLTPQ-NPN--------QNAAYLASLRIAEDIAHNGPI------------------------AVR 246 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~-~~~--------~~~l~~~a~~~a~~ia~~~~~------------------------a~~ 246 (333)
++++|+||+++||||+|+|+ ++. .+++.+.|.+++..++...+. ...
T Consensus 179 ~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (737)
T TIGR02441 179 KKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMTNPFVRQQVYK 258 (737)
T ss_pred CcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhcccchhHHHHHH
Confidence 99999999999999999985 110 144666677777665432100 011
Q ss_pred HHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcc
Q psy503 247 MAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGK 325 (333)
Q Consensus 247 ~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflek 325 (333)
.+++.+. + ++++ .+++....+..+..+...++++++..|.+.|.+++.|++.+.-+..|+-.
T Consensus 259 ~~~~~~~---~-------~~~g-------~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~ 320 (737)
T TIGR02441 259 TAEDKVM---K-------QTKG-------LYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQ 320 (737)
T ss_pred HHHHHHH---H-------hccC-------CCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1111111 0 0111 02222222222222333479999999999999999999999999998653
No 87
>KOG1682|consensus
Probab=100.00 E-value=3.9e-41 Score=288.41 Aligned_cols=248 Identities=22% Similarity=0.336 Sum_probs=228.9
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccC-HHHHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-EDQIRSFVSTLRY 122 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~-~~~~~~~~~~~~~ 122 (333)
.+++|-.|+||+|+|+|.++..|+.+|.+.|.....+.++|+|||+.. |+.||+|.||+++.+.+ .+...+.+..+.+
T Consensus 38 ~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~-GkifSaGH~LKELt~e~g~d~haevFqtc~d 116 (287)
T KOG1682|consen 38 EHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQ-GKIFSAGHNLKELTNEPGSDIHAEVFQTCTD 116 (287)
T ss_pred cccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecC-CccccccccHHHhhcCccchHHHHHHHHHHH
Confidence 468999999999999999999999999999999998999999999999 99999999999997654 2334566778889
Q ss_pred HHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC
Q psy503 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i 202 (333)
++.-|+++|.|+|+-|||.|..+|++|..+||++||+++++|..|..++|++....+. .|.|.+++..+.+|++||+++
T Consensus 117 vmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~ML~Tg~Pi 195 (287)
T KOG1682|consen 117 VMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAYMLMTGLPI 195 (287)
T ss_pred HHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchhHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999998766554 578999999999999999999
Q ss_pred CHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy503 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282 (333)
Q Consensus 203 sa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (333)
+++||+..|||+++||. +|+..++.++++.|...++..+..-|...+ .+..+
T Consensus 196 ~~eeAl~sGlvskvVp~----~el~~e~~~i~~~i~~~srav~slgk~f~y---~q~~m--------------------- 247 (287)
T KOG1682|consen 196 TGEEALISGLVSKVVPA----EELDKEIEEITNAIKAKSRAVISLGKEFYY---KQLAM--------------------- 247 (287)
T ss_pred chHHHHHhhhhhhcCCH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHH---------------------
Confidence 99999999999999995 889999999999999999999999999998 77766
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCCCC
Q psy503 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332 (333)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~d~~egi~aflekr~p~~~~ 332 (333)
+-.+++....+.+...++-.|++|||.+|++||.|+|+-
T Consensus 248 -----------s~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~~~h 286 (287)
T KOG1682|consen 248 -----------SQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPNWKH 286 (287)
T ss_pred -----------hHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCCcCC
Confidence 778889999999999999999999999999999999973
No 88
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=8.8e-40 Score=288.56 Aligned_cols=188 Identities=43% Similarity=0.770 Sum_probs=176.7
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHH--HHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ--IRSFVSTLR 121 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~--~~~~~~~~~ 121 (333)
.+++|++|+||+|++.|++|.+++.+|.++++.++.|+++++|||+|. ++.||+|.|++++.....+. ...+.+.++
T Consensus 5 ~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~-~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T cd06558 5 RDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGA-GKAFCAGADLKELAALSDAGEEARAFIRELQ 83 (195)
T ss_pred EECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhcccccchhHHHHHHHHH
Confidence 367999999999999999999999999999999999999999999998 99999999999987655433 567788899
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRL 201 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~ 201 (333)
+++.++..++||||++|||+|+|+|++++++||+||++++++|++||+++|++|+.|++++|++++|..++.+++++|+.
T Consensus 84 ~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~ 163 (195)
T cd06558 84 ELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRR 163 (195)
T ss_pred HHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHH
Q psy503 202 VDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAED 236 (333)
Q Consensus 202 isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ 236 (333)
++++||+++||||+++++ +++.+++.+++++
T Consensus 164 ~~a~ea~~~Glv~~~~~~----~~l~~~a~~~a~~ 194 (195)
T cd06558 164 ISAEEALELGLVDEVVPD----EELLAAALELARR 194 (195)
T ss_pred cCHHHHHHcCCCCeecCh----hHHHHHHHHHHhh
Confidence 999999999999999996 7788888888865
No 89
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.7e-39 Score=324.55 Aligned_cols=208 Identities=25% Similarity=0.294 Sum_probs=176.9
Q ss_pred ccccCccceEEEEeeecCCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCCCCcc
Q psy503 28 SKEGRKLTQIIYHNSPERPGIVELCMNRPQ----------ARNALNATLVEEILTAVEAIR-GDEEVRCVLLRSLVKDVF 96 (333)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~v~~Itln~p~----------~~Nalt~~~~~eL~~~l~~~~-~d~~v~vvVl~g~~g~~F 96 (333)
+++.+.++.+.++. +++|++||||||+ ++|++|.+|+.+|.++|++++ .|+++++|||||.++++|
T Consensus 4 ~~~~~~~~~v~~~~---~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~F 80 (546)
T TIGR03222 4 RTEPSQYRHWKLTF---DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVF 80 (546)
T ss_pred cCCCCCCceEEEEe---eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCC
Confidence 44444555555553 6899999999975 899999999999999999999 789999999999767899
Q ss_pred ccCCCchhhcccCHHHHH---HHH-HHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC--eEEeccccc
Q psy503 97 CAGADLKHRLTLNEDQIR---SFV-STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETK 170 (333)
Q Consensus 97 ~~G~Dl~~~~~~~~~~~~---~~~-~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~--a~f~~pe~~ 170 (333)
|+|.|++++.....+... .+. .....+...+..+||||||+|||+|+|||++|+++||+||++++ ++|++||++
T Consensus 81 caG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~ 160 (546)
T TIGR03222 81 CSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVP 160 (546)
T ss_pred cCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchh
Confidence 999999987532111111 111 11234555677899999999999999999999999999999986 799999997
Q ss_pred -cCccCChhhhhhcc--cccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCH
Q psy503 171 -LAIIPGAGGTQRLP--RIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGP 242 (333)
Q Consensus 171 -~Gl~p~~g~~~~L~--r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~ 242 (333)
+|++|++|++.+++ +++|..+|++|+++|++|+|+||+++||||+|||+ +++.+++.++|++|+..+|
T Consensus 161 ~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~----~~l~~~a~~lA~~la~~~p 231 (546)
T TIGR03222 161 LLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKP----SQFDAAIAERAAELAAQSD 231 (546)
T ss_pred ccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeCh----HHHHHHHHHHHHHHHhCCC
Confidence 99999999998887 68999999999999999999999999999999995 7899999999999998876
No 90
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=1.7e-38 Score=318.36 Aligned_cols=205 Identities=24% Similarity=0.292 Sum_probs=174.3
Q ss_pred CccceEEEEeeecCCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCCCCccccCC
Q psy503 32 RKLTQIIYHNSPERPGIVELCMNRPQ----------ARNALNATLVEEILTAVEAIR-GDEEVRCVLLRSLVKDVFCAGA 100 (333)
Q Consensus 32 ~~~~~~~~~~~~~~~~v~~Itln~p~----------~~Nalt~~~~~eL~~~l~~~~-~d~~v~vvVl~g~~g~~F~~G~ 100 (333)
.+++.+.++. +++|++||||||+ +.|++|.+|+.+|.+++++++ .|+++++|||+|.++++||+|.
T Consensus 12 ~~~~~~~~e~---~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~ 88 (550)
T PRK08184 12 SQYRHWKLSF---DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGA 88 (550)
T ss_pred CCCceEEEEe---eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCcc
Confidence 3455566554 6899999999653 899999999999999999999 7899999999998668999999
Q ss_pred CchhhcccCHHHHH---HHHH-HHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC--eEEeccccc-cCc
Q psy503 101 DLKHRLTLNEDQIR---SFVS-TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETK-LAI 173 (333)
Q Consensus 101 Dl~~~~~~~~~~~~---~~~~-~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~--a~f~~pe~~-~Gl 173 (333)
|++.+.....+... .... ....+...+..+||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|+
T Consensus 89 DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl 168 (550)
T PRK08184 89 NIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGV 168 (550)
T ss_pred CHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhcccc
Confidence 99987542211111 1111 1223455677899999999999999999999999999999987 899999997 999
Q ss_pred cCChhhhhhcc--cccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhhcCHH
Q psy503 174 IPGAGGTQRLP--RIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPI 243 (333)
Q Consensus 174 ~p~~g~~~~L~--r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~~~~~ 243 (333)
+|++|++++|+ +++|..++++++++|+.++|+||+++||||++||+ +++.+++.++|++|+.++|.
T Consensus 169 ~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~----d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 169 LPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKP----SKFDAKVAERAAELAAASDR 236 (550)
T ss_pred CCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCH----HHHHHHHHHHHHHHHhCCCC
Confidence 99999998898 77999999999999999999999999999999995 78999999999999988764
No 91
>KOG1684|consensus
Probab=100.00 E-value=6.7e-37 Score=282.38 Aligned_cols=253 Identities=23% Similarity=0.342 Sum_probs=212.5
Q ss_pred eecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcc----cCHHHHHHHH
Q psy503 42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLT----LNEDQIRSFV 117 (333)
Q Consensus 42 ~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~----~~~~~~~~~~ 117 (333)
.+.++...+||||||+..|++|.+|+..+.-.|..++.++.+++||+.|.++++||+|+|++.... ...+....++
T Consensus 42 ~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF 121 (401)
T KOG1684|consen 42 VEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFF 121 (401)
T ss_pred EecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHH
Confidence 445889999999999999999999999999999999999999999999999999999999976542 2334577888
Q ss_pred HHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHH
Q psy503 118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIY 197 (333)
Q Consensus 118 ~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~lll 197 (333)
+..+.+...|.++.||.||.++|..+|||+.|..+--||||+|++.|.+||+.+|++|+.|++++|+|+.| ..+.++.|
T Consensus 122 ~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg~YLgL 200 (401)
T KOG1684|consen 122 TEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YLGLYLGL 200 (401)
T ss_pred HHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888 69999999
Q ss_pred cCCCCCHHHHHHcCCcceecCCCCChhHHHHHHH----------------------------------------------
Q psy503 198 TGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASL---------------------------------------------- 231 (333)
Q Consensus 198 tG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~---------------------------------------------- 231 (333)
||+++++.||+..||.++.|++...+ .+++.+
T Consensus 201 TG~rl~GaD~~~~GlATHyv~S~~l~--~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs~~tV 278 (401)
T KOG1684|consen 201 TGQRLSGADALRCGLATHYVPSEKLP--SLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFSANTV 278 (401)
T ss_pred ccceecchHHHHhcchhhccchhhhh--HHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhccccH
Confidence 99999999999999999999974322 122221
Q ss_pred -----------------HHH----HHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccc
Q psy503 232 -----------------RIA----EDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNR 290 (333)
Q Consensus 232 -----------------~~a----~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (333)
+|| +.|-+.+|.++..|-+.++ .+
T Consensus 279 eeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~---eg-------------------------------- 323 (401)
T KOG1684|consen 279 EEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIR---EG-------------------------------- 323 (401)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHH---hh--------------------------------
Confidence 111 1122233333433333333 22
Q ss_pred cccCHHHHHHHHHHHHHHHhcCccHHHHHHHHhc--cCCCCCCC
Q psy503 291 EFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLG--KYKPVYKG 332 (333)
Q Consensus 291 ~~~~~~~~l~~e~~~~~~~~~~~d~~egi~afle--kr~p~~~~ 332 (333)
..+++++.+-.|++.-.+.+.+.||.||++|-|- +++|+|+.
T Consensus 324 s~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA~LIDKd~~PKW~p 367 (401)
T KOG1684|consen 324 SKQTLDQCLTMEYRLSLRMLMRGDFCEGVRAVLIDKDQNPKWDP 367 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchhhhhhheeecCCcCCCCCC
Confidence 2248999999999999999999999999999875 67799974
No 92
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.82 E-value=1.1e-19 Score=158.47 Aligned_cols=138 Identities=18% Similarity=0.192 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhH
Q psy503 65 TLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYG 144 (333)
Q Consensus 65 ~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~G 144 (333)
-.+.+|.++|+++++|+++++|||++ +|.|.|+... ..+.+++..+..++|||||+|+|.|.|
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~------------~~~~~~i~~~~~~~kpVia~v~G~a~g 84 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTAS------------EVIRAELAAARAAGKPVVASGGGNAAS 84 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHH------------HHHHHHHHHHHhCCCCEEEEECCchhH
Confidence 35789999999999999999999997 5778877642 234556777888999999999999999
Q ss_pred hhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhh--------hcccccC--HHHHHHHHHcCCCCCHHHHHHcCCcc
Q psy503 145 GGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQ--------RLPRIVG--IPLAKELIYTGRLVDSTEAKSIGLVN 214 (333)
Q Consensus 145 gG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~--------~L~r~iG--~~~a~~llltG~~isa~eAl~~Glv~ 214 (333)
+|+.|+++||+++++++++|+++.+..+..+...... .+++..| .....+++..|..++|++|++.||||
T Consensus 85 ~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD 164 (177)
T cd07014 85 GGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVD 164 (177)
T ss_pred HHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcc
Confidence 9999999999999999999999887766433222222 3333344 88889999999999999999999999
Q ss_pred eecCC
Q psy503 215 TLTPQ 219 (333)
Q Consensus 215 ~vv~~ 219 (333)
++.+.
T Consensus 165 ~v~~~ 169 (177)
T cd07014 165 SLGSF 169 (177)
T ss_pred cCCCH
Confidence 99984
No 93
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.82 E-value=2.4e-19 Score=157.74 Aligned_cols=145 Identities=17% Similarity=0.223 Sum_probs=114.6
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHh
Q psy503 49 VELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE 128 (333)
Q Consensus 49 ~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~ 128 (333)
++|+|+.+ ++..+...+.+.|+.++.++ ++.|+|.=..+ |+++.. ...++..|.
T Consensus 2 ~vv~i~g~-----I~~~~~~~l~~~l~~a~~~~-~~~vvl~InSp-----GG~v~~---------------~~~i~~~l~ 55 (187)
T cd07020 2 YVLEINGA-----ITPATADYLERAIDQAEEGG-ADALIIELDTP-----GGLLDS---------------TREIVQAIL 55 (187)
T ss_pred EEEEEeeE-----EChHHHHHHHHHHHHHHhCC-CCEEEEEEECC-----CCCHHH---------------HHHHHHHHH
Confidence 56667633 66777889999999998665 67777763212 233221 124455667
Q ss_pred cCCCcEEEEec---hhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCCh--------------hhhhhcccccCH--
Q psy503 129 SIPVPVLAVLD---GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGA--------------GGTQRLPRIVGI-- 189 (333)
Q Consensus 129 ~~~kP~Iaav~---G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~--------------g~~~~L~r~iG~-- 189 (333)
.+|||||++|+ |+|.|+|+.|+++||+++++++++|+.+++..+..+.. +....+++..|.
T Consensus 56 ~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~ 135 (187)
T cd07020 56 ASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNA 135 (187)
T ss_pred hCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 89999999999 99999999999999999999999999999985544432 234578888887
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 190 ~~a~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
.++.+++++|+.|+++||+++||||+++++
T Consensus 136 ~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~ 165 (187)
T cd07020 136 EWAEKAVRESLSLTAEEALKLGVIDLIAAD 165 (187)
T ss_pred HHHHHHHHcCCeecHHHHHHcCCcccccCC
Confidence 689999999999999999999999999996
No 94
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.71 E-value=1.3e-16 Score=142.94 Aligned_cols=151 Identities=20% Similarity=0.240 Sum_probs=110.0
Q ss_pred CEEEEEEcCC--CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 47 GIVELCMNRP--QARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 47 ~v~~Itln~p--~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
+|++|.++-| ++.+..+...+.+|.++|+.+..||++++|||+ .||.|.|+.... .+.+.+
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~~------------~~~~~l 63 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTASE------------VIRAEL 63 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHHH------------HHHHHH
Confidence 3556666544 122333445689999999999999999999998 589999997641 234556
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCcc----------CChhhhhhcccccC------
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAII----------PGAGGTQRLPRIVG------ 188 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~----------p~~g~~~~L~r~iG------ 188 (333)
..+..++||+|++++|.|.|+|+.|+++||++++++++.|+. +|+. +..|..+.+.+..|
T Consensus 64 ~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gs----iGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~ 139 (211)
T cd07019 64 AAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGS----IGIFGVITTVENSLDSIGVHTDGVSTSPLADVSI 139 (211)
T ss_pred HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEE----eEEEEEcCCHHHHHHhcCCceEEEEecCcccCCC
Confidence 778889999999999999999999999999999999988873 3332 22222222222111
Q ss_pred ---------------------------------HHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q psy503 189 ---------------------------------IPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218 (333)
Q Consensus 189 ---------------------------------~~~a~~llltG~~isa~eAl~~Glv~~vv~ 218 (333)
.....+-+..|..+++++|++.||||+|-.
T Consensus 140 ~~~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~ 202 (211)
T cd07019 140 TRALPPEAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGD 202 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCC
Confidence 112233456788999999999999999987
No 95
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.61 E-value=2.7e-15 Score=152.79 Aligned_cols=176 Identities=22% Similarity=0.281 Sum_probs=133.3
Q ss_pred cCCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC--CccccCCCchhhcccCHHHHHHHHHH
Q psy503 44 ERPGIVELCMNRPQ--ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK--DVFCAGADLKHRLTLNEDQIRSFVST 119 (333)
Q Consensus 44 ~~~~v~~Itln~p~--~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g--~~F~~G~Dl~~~~~~~~~~~~~~~~~ 119 (333)
.+++|++|+++.+= ..+.......+.+.+.|+.+..|+++++|||+-.++ ..|++ +.
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as-------------------e~ 366 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS-------------------EI 366 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH-------------------HH
Confidence 36889999999763 234444445677889999999999999999997522 22321 22
Q ss_pred HHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEE------eccc------cccCccCChhhhhhccc--
Q psy503 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM------GLVE------TKLAIIPGAGGTQRLPR-- 185 (333)
Q Consensus 120 ~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f------~~pe------~~~Gl~p~~g~~~~L~r-- 185 (333)
+.+.+.++...+||||+.++|.|.+||+.++++||.++|++.+.+ +.+. .++|+.+....+..+.+
T Consensus 367 i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s 446 (584)
T TIGR00705 367 IRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVS 446 (584)
T ss_pred HHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCC
Confidence 344555566778999999999999999999999999999999876 5553 57888887666655543
Q ss_pred --------------------------ccCHHH-----HHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHH
Q psy503 186 --------------------------IVGIPL-----AKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIA 234 (333)
Q Consensus 186 --------------------------~iG~~~-----a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a 234 (333)
.++..+ ..+.+.+|+.++++||+++||||++-. +++|.+.|
T Consensus 447 ~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~--------~~~Ai~~a 518 (584)
T TIGR00705 447 LLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGG--------LDEAVAKA 518 (584)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCC--------HHHHHHHH
Confidence 444444 678889999999999999999999954 36688888
Q ss_pred HHHhhc-CHHHHH
Q psy503 235 EDIAHN-GPIAVR 246 (333)
Q Consensus 235 ~~ia~~-~~~a~~ 246 (333)
++++.. ++.++.
T Consensus 519 ~~la~~~~~~~v~ 531 (584)
T TIGR00705 519 AKLAHCREQWSVE 531 (584)
T ss_pred HHHcCCCCCceEE
Confidence 888887 554444
No 96
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.59 E-value=1.8e-14 Score=129.43 Aligned_cols=97 Identities=23% Similarity=0.224 Sum_probs=74.7
Q ss_pred cCCCCCCCC-CHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCC
Q psy503 54 NRPQARNAL-NATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPV 132 (333)
Q Consensus 54 n~p~~~Nal-t~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k 132 (333)
+++...|++ +..++.+|.++|+.++.|+++++|||+.. |.|.++... ..+.+.+..+.. +|
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~-----s~gg~~~~~------------~~l~~~l~~~~~-~K 74 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDID-----SPGGEVAGV------------FELADAIRAARA-GK 74 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEe-----CCCCcHHHH------------HHHHHHHHHHhc-CC
Confidence 344445654 57899999999999999999999999764 445554321 223334444444 69
Q ss_pred cEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccc
Q psy503 133 PVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVE 168 (333)
Q Consensus 133 P~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe 168 (333)
||||+++|.|.|+|+.|+++||++++++++.|+...
T Consensus 75 pViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG 110 (214)
T cd07022 75 PIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIG 110 (214)
T ss_pred CEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeee
Confidence 999999999999999999999999999999887543
No 97
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.58 E-value=1.7e-14 Score=128.92 Aligned_cols=100 Identities=21% Similarity=0.277 Sum_probs=80.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|++|.++.+=... ...++.+|.++|+.++.|+++++|||++. |.|.|+... ..+.+.+..+
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~~-----s~Gg~~~~~------------~~i~~~i~~~ 62 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRIN-----SPGGSVVAS------------EEIYREIRRL 62 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEEE-----CCCCCHHHH------------HHHHHHHHHH
Confidence 5666666441000 26789999999999999999999999984 678887652 2234566777
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEec
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~ 166 (333)
..++|||||+++|.|.|+|+.|+++||++++++++.|+.
T Consensus 63 ~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~ 101 (208)
T cd07023 63 RKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGS 101 (208)
T ss_pred HhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEe
Confidence 888999999999999999999999999999999998864
No 98
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.57 E-value=2.8e-14 Score=122.32 Aligned_cols=135 Identities=20% Similarity=0.227 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechh
Q psy503 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS 141 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~ 141 (333)
+++.++.+|.+.|+.++.|+++++|+|... |.|.|+.. ...+...+..++||||+.++|.
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~-----s~Gg~~~~---------------~~~i~~~l~~~~kpvva~~~g~ 67 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEVN-----TPGGRVDA---------------GMNIVDALQASRKPVIAYVGGQ 67 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEEE-----CCCcCHHH---------------HHHHHHHHHHhCCCEEEEECCh
Confidence 566889999999999999999999999874 55665532 2334556667789999999999
Q ss_pred hhHhhHHHHHhCCEEEEeCCeEEeccccccCccCCh--hh----h-------hhc------ccccCHHHHHHHHHcCCCC
Q psy503 142 AYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGA--GG----T-------QRL------PRIVGIPLAKELIYTGRLV 202 (333)
Q Consensus 142 a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~--g~----~-------~~L------~r~iG~~~a~~llltG~~i 202 (333)
|.++|+.|+++||.|++.+++.|++.....+..... .. . ..+ .|.+......+++..|..+
T Consensus 68 ~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~ 147 (161)
T cd00394 68 AASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVL 147 (161)
T ss_pred hHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEE
Confidence 999999999999999999999999988775543221 00 0 011 1123444567788889999
Q ss_pred CHHHHHHcCCccee
Q psy503 203 DSTEAKSIGLVNTL 216 (333)
Q Consensus 203 sa~eAl~~Glv~~v 216 (333)
+++||+++||||+|
T Consensus 148 ~a~eA~~~GLvD~i 161 (161)
T cd00394 148 TAQEALEYGLVDAL 161 (161)
T ss_pred cHHHHHHcCCcCcC
Confidence 99999999999985
No 99
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.53 E-value=7.2e-14 Score=119.80 Aligned_cols=129 Identities=19% Similarity=0.161 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhH
Q psy503 65 TLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYG 144 (333)
Q Consensus 65 ~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~G 144 (333)
.+...+.+.|+.++.++. -.+.|.+.||..++ ...+...|..++||||+.++|.|.|
T Consensus 15 ~~~~~~~~~l~~~~~~~~-i~l~inspGG~~~~----------------------~~~i~~~i~~~~~pvi~~v~g~a~s 71 (160)
T cd07016 15 VTAKEFKDALDALGDDSD-ITVRINSPGGDVFA----------------------GLAIYNALKRHKGKVTVKIDGLAAS 71 (160)
T ss_pred cCHHHHHHHHHhccCCCC-EEEEEECCCCCHHH----------------------HHHHHHHHHhcCCCEEEEEcchHHh
Confidence 467788888998887743 34555665333111 1346666778899999999999999
Q ss_pred hhHHHHHhCCEEEEeCCeEEeccccccCccCChh---------------hhhhcccccC--HHHHHHHHHcCCCCCHHHH
Q psy503 145 GGLEMALACDIRVAASNVRMGLVETKLAIIPGAG---------------GTQRLPRIVG--IPLAKELIYTGRLVDSTEA 207 (333)
Q Consensus 145 gG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g---------------~~~~L~r~iG--~~~a~~llltG~~isa~eA 207 (333)
+|+.|+++||+|++++++.|+++....+..+... ....+.+..| .....+++..+..++++||
T Consensus 72 ~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA 151 (160)
T cd07016 72 AASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEA 151 (160)
T ss_pred HHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHH
Confidence 9999999999999999999999887666544322 1223667777 6777788888889999999
Q ss_pred HHcCCccee
Q psy503 208 KSIGLVNTL 216 (333)
Q Consensus 208 l~~Glv~~v 216 (333)
+++||||+|
T Consensus 152 ~~~GliD~v 160 (160)
T cd07016 152 VELGFADEI 160 (160)
T ss_pred HHcCCCCcC
Confidence 999999986
No 100
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.52 E-value=2e-13 Score=122.03 Aligned_cols=144 Identities=23% Similarity=0.286 Sum_probs=99.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|++|+++.+ ++ ....+|.++|+.+..|+++++|||+.. |.|.++.. ...+...|
T Consensus 2 v~vi~i~g~-----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~---------------~~~l~~~i 55 (207)
T TIGR00706 2 IAILPVSGA-----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVA---------------SEEIYEKL 55 (207)
T ss_pred EEEEEEEEE-----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHH---------------HHHHHHHH
Confidence 566666644 21 336789999999999999999999985 55665543 13344455
Q ss_pred hcCC--CcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccc------------cCccCC-----------------
Q psy503 128 ESIP--VPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK------------LAIIPG----------------- 176 (333)
Q Consensus 128 ~~~~--kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~------------~Gl~p~----------------- 176 (333)
..++ ||+|+.++|.|.|+|+.|+++||.+++++++.++...+. +|+-+.
T Consensus 56 ~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~ 135 (207)
T TIGR00706 56 KKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTREL 135 (207)
T ss_pred HHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCC
Confidence 5555 999999999999999999999999999999887653332 222110
Q ss_pred -hhhhhh-----------------cccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q psy503 177 -AGGTQR-----------------LPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218 (333)
Q Consensus 177 -~g~~~~-----------------L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~ 218 (333)
...-.. -.|.+...... -++.|+.+++++|++.||||++..
T Consensus 136 s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~-~~~~~~~~~~~~A~~~gLvD~i~~ 194 (207)
T TIGR00706 136 TPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVK-KFADGRVFTGRQALKLRLVDKLGT 194 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHhcCCcccHHHHHHcCCCcccCC
Confidence 000000 01222233333 346789999999999999999987
No 101
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.36 E-value=8.5e-12 Score=108.78 Aligned_cols=146 Identities=16% Similarity=0.242 Sum_probs=104.3
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHh
Q psy503 49 VELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE 128 (333)
Q Consensus 49 ~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~ 128 (333)
.+|+++. .+++.....|.+.|+++.+++ +..|||.=..+ |+++ .....+...|.
T Consensus 2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~insp-----GG~v---------------~~~~~I~~~l~ 55 (178)
T cd07021 2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDIDTP-----GGRV---------------DSALEIVDLIL 55 (178)
T ss_pred EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEECc-----CCCH---------------HHHHHHHHHHH
Confidence 4566653 366778888999999998886 56666654412 2222 33455677888
Q ss_pred cCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhh--------hh------hccccc--CHHHH
Q psy503 129 SIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGG--------TQ------RLPRIV--GIPLA 192 (333)
Q Consensus 129 ~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~--------~~------~L~r~i--G~~~a 192 (333)
.+++|||+.|+|.|.++|+.++++||++++++++.|+.++.- +..+. .. -+.+.- ....+
T Consensus 56 ~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a 131 (178)
T cd07021 56 NSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIA 131 (178)
T ss_pred hCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999999999999999999999987543 32222 00 111122 24455
Q ss_pred HHHHHcC-------------CCCCHHHHHHcCCcceecCCCCChhHHH
Q psy503 193 KELIYTG-------------RLVDSTEAKSIGLVNTLTPQNPNQNAAY 227 (333)
Q Consensus 193 ~~llltG-------------~~isa~eAl~~Glv~~vv~~~~~~~~l~ 227 (333)
..|+-.. -.++++||++.|++|.+.++ .++++
T Consensus 132 ~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~---~~~ll 176 (178)
T cd07021 132 EAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS---LDELL 176 (178)
T ss_pred HHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC---HHHHh
Confidence 5665554 27999999999999999997 45554
No 102
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.36 E-value=4.2e-12 Score=114.68 Aligned_cols=89 Identities=21% Similarity=0.187 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechh
Q psy503 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS 141 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~ 141 (333)
-+..++.+|.+.|+.+..|+++++|||+.. +..| ++.++++ +.+.+..+...+|||||.++|
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~-s~gg-~~~~~~e---------------l~~~i~~~~~~~kpVia~~~~- 87 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIKGIVLDLD-GLSG-GLAKLEE---------------LRQALERFRASGKPVIAYADG- 87 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeEEEEEECC-CCCC-CHHHHHH---------------HHHHHHHHHHhCCeEEEEeCC-
Confidence 345678999999999999999999999998 4444 4444433 244555566679999999998
Q ss_pred hhHhhHHHHHhCCEEEEeCCeEEeccc
Q psy503 142 AYGGGLEMALACDIRVAASNVRMGLVE 168 (333)
Q Consensus 142 a~GgG~~Lal~cD~rias~~a~f~~pe 168 (333)
|.+||+.|+++||.+++.+.+.|+...
T Consensus 88 ~~sggy~lasaad~I~a~p~~~vg~iG 114 (222)
T cd07018 88 YSQGQYYLASAADEIYLNPSGSVELTG 114 (222)
T ss_pred CCchhhhhhhhCCEEEECCCceEEeec
Confidence 889999999999999999999988743
No 103
>KOG1683|consensus
Probab=99.09 E-value=1.1e-11 Score=116.44 Aligned_cols=184 Identities=18% Similarity=0.170 Sum_probs=154.8
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
-.++..+.++ |+ .|..|.++.++|..-|+.+..+..+++..+|+...+.|++|.|..+.....+......+.++++++
T Consensus 64 y~~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii 141 (380)
T KOG1683|consen 64 YTGFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEII 141 (380)
T ss_pred ccccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHH
Confidence 4489999999 55 699999999999999999999999999999999889999999999988776666667788999999
Q ss_pred HHHhcCCCcEEEEechhhhHhh--HHHHHhCCEEEEe--CCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 125 CQLESIPVPVLAVLDGSAYGGG--LEMALACDIRVAA--SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG--~~Lal~cD~rias--~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
....+++.|+.+++||++-.|+ +.++.+|+|++.- .....+..+...++..+..-...+...+|...+...+-.|.
T Consensus 142 ~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~ 221 (380)
T KOG1683|consen 142 LALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGV 221 (380)
T ss_pred HhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhcc
Confidence 9999999999999999999998 8899999999987 55566888888886444444455566678878888888899
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHH
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLR 232 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~ 232 (333)
-|+..||++-|+++++.|. ..+++++....
T Consensus 222 gfdv~eal~~gl~~~~~~r--~~eel~~~~~~ 251 (380)
T KOG1683|consen 222 GFDVAEALAVGLGDEIGPR--IEEELLEKGRA 251 (380)
T ss_pred CccHHHHHhhccchhccch--hHHHHHHHHhh
Confidence 9999999999999999983 12455554443
No 104
>PRK10949 protease 4; Provisional
Probab=98.96 E-value=1.4e-08 Score=104.07 Aligned_cols=153 Identities=18% Similarity=0.251 Sum_probs=101.4
Q ss_pred CCCEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHH
Q psy503 45 RPGIVELCMNRP-----QARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVST 119 (333)
Q Consensus 45 ~~~v~~Itln~p-----~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 119 (333)
++.|++|+++.. ...+.++. +.+.+.|+++..|+++++|||.-..++ +... . .+.
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSpG-----Gs~~--------a----se~ 384 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSPG-----GSVT--------A----SEV 384 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCCC-----CcHH--------H----HHH
Confidence 567888887643 12233443 567888999999999999999987433 2111 1 133
Q ss_pred HHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEecccc------------ccCccCChhhhhhc----
Q psy503 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVET------------KLAIIPGAGGTQRL---- 183 (333)
Q Consensus 120 ~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~------------~~Gl~p~~g~~~~L---- 183 (333)
+.+.+.++....||+|+.+.|.|..||..++++||.++|.+.+..|.-.+ ++|+-........+
T Consensus 385 i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~ 464 (618)
T PRK10949 385 IRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVS 464 (618)
T ss_pred HHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCcc
Confidence 44455556667899999999999999999999999999998765443221 13332111100000
Q ss_pred ------------------------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q psy503 184 ------------------------------PRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218 (333)
Q Consensus 184 ------------------------------~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~ 218 (333)
.|.+..... +-+..|+.+++++|++.||||++-.
T Consensus 465 ~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~ 528 (618)
T PRK10949 465 ITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQI-DKIAQGHVWTGQDAKANGLVDSLGD 528 (618)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHhcCCcccHHHHHHcCCCccCCC
Confidence 011123332 3456899999999999999999977
No 105
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.94 E-value=4.3e-08 Score=84.88 Aligned_cols=150 Identities=14% Similarity=0.191 Sum_probs=105.5
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHh
Q psy503 49 VELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE 128 (333)
Q Consensus 49 ~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~ 128 (333)
.+|.++. .+++.+...|.+.++.++++ ..+.|+|.=. |-|+.+. ....++..|.
T Consensus 2 ~vi~i~G-----~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in-----SPGG~v~---------------~~~~I~~~i~ 55 (172)
T cd07015 2 YVAQIKG-----QITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRAD---------------AAGNIVQRIQ 55 (172)
T ss_pred EEEEEee-----EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE-----CCCCCHH---------------HHHHHHHHHH
Confidence 4555553 36777888899999998875 4566666554 2233222 1234556667
Q ss_pred cCCCcEEEEec---hhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCC----h-h---hhhh------cccccC--H
Q psy503 129 SIPVPVLAVLD---GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPG----A-G---GTQR------LPRIVG--I 189 (333)
Q Consensus 129 ~~~kP~Iaav~---G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~----~-g---~~~~------L~r~iG--~ 189 (333)
..++||++.|+ |.|..+|..++++||.+++.+++.++....-.|..+. . . -... +.+.-| .
T Consensus 56 ~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~ 135 (172)
T cd07015 56 QSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNA 135 (172)
T ss_pred hcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCH
Confidence 78999999999 9999999999999999999999999987764332110 0 0 0011 111123 5
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHH
Q psy503 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAY 227 (333)
Q Consensus 190 ~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~ 227 (333)
..+..++.....++++||+++|++|.|+++ .++++
T Consensus 136 ~~a~~~v~~~~~lta~EA~~~G~iD~ia~~---~~~ll 170 (172)
T cd07015 136 TIAEEFITKDLSLTPEEALKYGVIEVVARD---INELL 170 (172)
T ss_pred HHHHHHHHhhcCcCHHHHHHcCCceeeeCC---HHHHh
Confidence 677788888899999999999999999997 55554
No 106
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.79 E-value=7.5e-08 Score=82.80 Aligned_cols=135 Identities=14% Similarity=0.105 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechh
Q psy503 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS 141 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~ 141 (333)
++..+..++.+.|..++.++..+.|+|.=. |.|+++ .....++..+..+++|+++.+.|.
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In-----SpGG~v---------------~~~~~i~~~i~~~~~~v~~~~~g~ 68 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN-----SPGGDV---------------FAGMAIYDTIKFIKADVVTIIDGL 68 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE-----CCCCcH---------------HHHHHHHHHHHhcCCCceEEEEee
Confidence 567888999999999998876665555443 122222 122345566667789999999999
Q ss_pred hhHhhHHHHHhCC--EEEEeCCeEEeccccccCccCChhhhh---------------hcccc--cCHHHHHHHHHcCCCC
Q psy503 142 AYGGGLEMALACD--IRVAASNVRMGLVETKLAIIPGAGGTQ---------------RLPRI--VGIPLAKELIYTGRLV 202 (333)
Q Consensus 142 a~GgG~~Lal~cD--~rias~~a~f~~pe~~~Gl~p~~g~~~---------------~L~r~--iG~~~a~~llltG~~i 202 (333)
|.++|..|+++|| .|++.+++.|.+....-+......-.. .+.+. .......+++-.+..+
T Consensus 69 aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~ 148 (162)
T cd07013 69 AASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWL 148 (162)
T ss_pred hhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccc
Confidence 9999999999999 688888888776443222111000000 11111 2355666777778888
Q ss_pred CHHHHHHcCCccee
Q psy503 203 DSTEAKSIGLVNTL 216 (333)
Q Consensus 203 sa~eAl~~Glv~~v 216 (333)
+|+||+++||||++
T Consensus 149 sa~eA~~~GliD~i 162 (162)
T cd07013 149 SAREAVEYGFADTI 162 (162)
T ss_pred cHHHHHHcCCCCcC
Confidence 99999999999985
No 107
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.65 E-value=3e-07 Score=81.74 Aligned_cols=134 Identities=15% Similarity=0.169 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 61 ALNATLVEEILTAVEAIRGDEEVR--CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 61 alt~~~~~eL~~~l~~~~~d~~v~--vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
.++..+...+...|..++.++..+ .+.|.+. | +|+. ....++..+...+.|+++.+
T Consensus 39 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSp-G------G~v~---------------~g~~I~d~i~~~~~~v~t~~ 96 (200)
T PRK00277 39 EVEDHMANLIVAQLLFLEAEDPDKDIYLYINSP-G------GSVT---------------AGLAIYDTMQFIKPDVSTIC 96 (200)
T ss_pred EECHHHHHHHHHHHHHhhccCCCCCEEEEEECC-C------CcHH---------------HHHHHHHHHHhcCCCEEEEE
Confidence 377889999999999887654333 2333443 2 2221 12234455666778999999
Q ss_pred chhhhHhhHHHHHhCC--EEEEeCCeEEeccccccCccCChhhh------------------hhcccccC--HHHHHHHH
Q psy503 139 DGSAYGGGLEMALACD--IRVAASNVRMGLVETKLAIIPGAGGT------------------QRLPRIVG--IPLAKELI 196 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD--~rias~~a~f~~pe~~~Gl~p~~g~~------------------~~L~r~iG--~~~a~~ll 196 (333)
.|.|.+.|..|+++++ .|++.+++.|++....-|. .|.. ..+...-| .....+++
T Consensus 97 ~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~ 173 (200)
T PRK00277 97 IGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDT 173 (200)
T ss_pred EeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence 9999999999998743 5666666666554432111 1111 11222223 45666677
Q ss_pred HcCCCCCHHHHHHcCCcceecCC
Q psy503 197 YTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 197 ltG~~isa~eAl~~Glv~~vv~~ 219 (333)
-.+..++|+||+++||||+|+++
T Consensus 174 ~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 174 DRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred hCCccccHHHHHHcCCccEEeec
Confidence 77889999999999999999985
No 108
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.63 E-value=6.2e-07 Score=85.05 Aligned_cols=150 Identities=22% Similarity=0.228 Sum_probs=93.3
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
++.|++|.++.+=..+ -...+-.++...+..+..+ ..|||.-.+++ +.+.. . ......+
T Consensus 89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLridSpG-----G~v~~--------s----~~a~~~l 147 (330)
T PRK11778 89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLESPG-----GVVHG--------Y----GLAASQL 147 (330)
T ss_pred CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEeCCC-----CchhH--------H----HHHHHHH
Confidence 4679999988652111 1223445566666555433 46777665332 22211 0 0111123
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccC----------------
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG---------------- 188 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG---------------- 188 (333)
.++....||+++.+++.|..||..++++||.+++.+.+.+|.-.+-.. .|... .|-.++|
T Consensus 148 ~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~---~lLeKlGI~~evi~aG~yK~a~~ 223 (330)
T PRK11778 148 QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFH---RLLKKHDIDVELHTAGEYKRTLT 223 (330)
T ss_pred HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHH---HHHHHCCCceEEEEecCccCCCC
Confidence 445677899999999999999999999999999999987774433211 12211 1111222
Q ss_pred -------------------------------H-HHHHHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 189 -------------------------------I-PLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 189 -------------------------------~-~~a~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
+ ....+-+.+|+.+++++|++.||||++...
T Consensus 224 pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~ 286 (330)
T PRK11778 224 LFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTS 286 (330)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCH
Confidence 1 122345668999999999999999999884
No 109
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.60 E-value=7.9e-06 Score=75.12 Aligned_cols=167 Identities=12% Similarity=0.093 Sum_probs=108.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 59 ~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
...++++-.+...+.++.+++. .+-+|-|.-+ ++++. |.+-. .......+..++..+....+|+|+.|
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDt-pGa~~-g~~aE---------~~G~~~~ia~~~~~~s~~~VP~IsVI 143 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKF-GRPVVTFINT-AGAYP-GVGAE---------ERGQGEAIARNLMEMSDLKVPIIAII 143 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEEC-CCcCC-CHhHH---------hccHHHHHHHHHHHHhCCCCCEEEEE
Confidence 4667899999999999988765 3456666555 44443 33211 11234556677778889999999999
Q ss_pred chhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q psy503 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~ 218 (333)
-|.|.|||......||++++.+++.|+. +.|.+.+...+...--...+.+.+ .+++.++++.|+||+|+|
T Consensus 144 ~G~~~gGgA~a~~~~D~v~m~~~a~~~v------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ii~ 213 (256)
T PRK12319 144 IGEGGSGGALALAVADQVWMLENTMYAV------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDKVIP 213 (256)
T ss_pred eCCcCcHHHHHhhcCCEEEEecCceEEE------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcEecC
Confidence 9999999888888999999999988763 223333333333322222333333 779999999999999998
Q ss_pred CC-CChhH----HHHHHHHHHHHHhhcCHHHHHH
Q psy503 219 QN-PNQNA----AYLASLRIAEDIAHNGPIAVRM 247 (333)
Q Consensus 219 ~~-~~~~~----l~~~a~~~a~~ia~~~~~a~~~ 247 (333)
.. .++++ +.+...+...++...++..+..
T Consensus 214 e~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 247 (256)
T PRK12319 214 EHGYFSSEIIDMIKKNLIEELAQLSQKPLEQLLE 247 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 53 11222 2233334455556666655543
No 110
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.55 E-value=1.4e-06 Score=77.94 Aligned_cols=134 Identities=17% Similarity=0.213 Sum_probs=95.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 62 LNATLVEEILTAVEAIRGDEEVR--CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~--vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
++.++..++...|..++.++..+ .|.|.+. | +++. ....++..|..++.|+++.+.
T Consensus 44 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSp-G------G~v~---------------~g~~I~d~i~~~~~~v~t~~~ 101 (207)
T PRK12553 44 VDDASANDVMAQLLVLESIDPDRDITLYINSP-G------GSVT---------------AGDAIYDTIQFIRPDVQTVCT 101 (207)
T ss_pred ECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCC-C------CcHH---------------HHHHHHHHHHhcCCCcEEEEE
Confidence 77899999999999998654333 3334444 2 2221 123456666677889999999
Q ss_pred hhhhHhhHHHHHhCC--EEEEeCCeEEecccccc-CccCChhhh------------------hhccccc--CHHHHHHHH
Q psy503 140 GSAYGGGLEMALACD--IRVAASNVRMGLVETKL-AIIPGAGGT------------------QRLPRIV--GIPLAKELI 196 (333)
Q Consensus 140 G~a~GgG~~Lal~cD--~rias~~a~f~~pe~~~-Gl~p~~g~~------------------~~L~r~i--G~~~a~~ll 196 (333)
|.|.+.|..|+++|| .|++.+++.|.+-.... |.. .|.. ..+.+.- ......+++
T Consensus 102 G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~--~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~ 179 (207)
T PRK12553 102 GQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGI--RGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDT 179 (207)
T ss_pred eehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999999 59999999988876542 211 1110 1122222 355666777
Q ss_pred HcCCCCCHHHHHHcCCcceecCC
Q psy503 197 YTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 197 ltG~~isa~eAl~~Glv~~vv~~ 219 (333)
-.+..++|+||+++||||+|+++
T Consensus 180 ~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 180 DRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred hcCccccHHHHHHcCCccEEcCc
Confidence 78999999999999999999986
No 111
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.54 E-value=1.4e-05 Score=75.45 Aligned_cols=167 Identities=10% Similarity=0.072 Sum_probs=108.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 59 ~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
...++++-++...+.++.+++.. +-+|-|.-+ +++++ |.+-. .......+...+..+.....|+|+.|
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f~-lPIItlvDT-pGA~~-G~~AE---------~~G~~~aiar~l~~~a~~~VP~IsVV 199 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKFG-LPILTFIDT-PGAWA-GVKAE---------KLGQGEAIAVNLREMFSFEVPIICTI 199 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeC-CCcCc-CHHHH---------HHhHHHHHHHHHHHHHcCCCCEEEEE
Confidence 45688999999999999887653 455555554 55454 32211 11233455666677788899999999
Q ss_pred chhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q psy503 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~ 218 (333)
-|.|.|||......||++++.++++|+. +.|.+.++.++...- ++.+ +...-+++|++.+++|+||+|+|
T Consensus 200 iGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d~~---~a~~-aA~~~~ita~dL~~~giiD~ii~ 269 (322)
T CHL00198 200 IGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKDSK---KSLD-AAEALKITSEDLKVLGIIDEIIP 269 (322)
T ss_pred eCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcchh---hHHH-HHHHcCCCHHHHHhCCCCeEecc
Confidence 9999888866555699999999998773 234444444444322 2222 23345899999999999999998
Q ss_pred CC-----CChhH----HHHHHHHHHHHHhhcCHHHHHH
Q psy503 219 QN-----PNQNA----AYLASLRIAEDIAHNGPIAVRM 247 (333)
Q Consensus 219 ~~-----~~~~~----l~~~a~~~a~~ia~~~~~a~~~ 247 (333)
.. .++++ +.+...+...++...++..+..
T Consensus 270 Ep~ggah~~~~~~~~~l~~~~~~~l~~l~~~~~~~l~~ 307 (322)
T CHL00198 270 EPIGGAQADPASASKILKKKLIRQLDFLKILSPSELKA 307 (322)
T ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 42 12222 2233334555566667665544
No 112
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.54 E-value=9.3e-07 Score=76.64 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=93.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechh
Q psy503 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS 141 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~ 141 (333)
++.+...++...|..++.++..+.|+|.=. |.|+|+.. ...++..+...+.|+++.+.|.
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in-----SpGG~v~~---------------~~~i~~~l~~~~~~v~t~~~g~ 77 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN-----SPGGSVTA---------------GLAIYDTMQYIKPPVSTICLGL 77 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEE-----CCCCCHHH---------------HHHHHHHHHhcCCCEEEEEEeE
Confidence 677889999999999987755444443322 11222211 1234455566789999999999
Q ss_pred hhHhhHHHHHhCC--EEEEeCCeEEeccccccCccCChhh---------------hhhcccc--cCHHHHHHHHHcCCCC
Q psy503 142 AYGGGLEMALACD--IRVAASNVRMGLVETKLAIIPGAGG---------------TQRLPRI--VGIPLAKELIYTGRLV 202 (333)
Q Consensus 142 a~GgG~~Lal~cD--~rias~~a~f~~pe~~~Gl~p~~g~---------------~~~L~r~--iG~~~a~~llltG~~i 202 (333)
|.++|..+++++| .|++.+++.|.+-+...+..-...- ...+... ........++..+..+
T Consensus 78 aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l 157 (171)
T cd07017 78 AASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYM 157 (171)
T ss_pred ehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccc
Confidence 9999999999999 8999999999888766544222100 0011111 2345666777788999
Q ss_pred CHHHHHHcCCccee
Q psy503 203 DSTEAKSIGLVNTL 216 (333)
Q Consensus 203 sa~eAl~~Glv~~v 216 (333)
+++||+++||||+|
T Consensus 158 ta~EA~e~GiiD~V 171 (171)
T cd07017 158 SAEEAKEYGLIDKI 171 (171)
T ss_pred cHHHHHHcCCCccC
Confidence 99999999999986
No 113
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.49 E-value=9.4e-07 Score=84.02 Aligned_cols=150 Identities=24% Similarity=0.257 Sum_probs=100.2
Q ss_pred CEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 47 GIVELCMNRPQ--ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 47 ~v~~Itln~p~--~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
.|++|.++-+= ..+.+..-..+.+.+.|+.+..|+++++|||.=..++ +.... .+.+.+.+
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPG-----G~v~a------------s~~i~~~l 122 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPG-----GSVVA------------SELIARAL 122 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcC-----CchhH------------HHHHHHHH
Confidence 46666665431 0011111235667778888888999999988765332 21111 13344555
Q ss_pred HHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccC----------------
Q psy503 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG---------------- 188 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG---------------- 188 (333)
.++..-. |+++.|++.|..||..++++||.++|++.+..|--.+..+ ......+-.++|
T Consensus 123 ~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~----~~~~~~l~~k~Gv~~~~~~ag~~k~~~~ 197 (317)
T COG0616 123 KRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISG----APNFEELLEKLGVEKEVITAGEYKDILS 197 (317)
T ss_pred HHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEe----cCCHHHHHHhcCCceeeeeccccccccC
Confidence 5555544 9999999999999999999999999999998884444333 222223334444
Q ss_pred ----------------------------------HHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q psy503 189 ----------------------------------IPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218 (333)
Q Consensus 189 ----------------------------------~~~a~~llltG~~isa~eAl~~Glv~~vv~ 218 (333)
......-+.+|+-+++++|++.||||++-.
T Consensus 198 ~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~ 261 (317)
T COG0616 198 PFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGG 261 (317)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCC
Confidence 222345677899999999999999999988
No 114
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.45 E-value=4.5e-05 Score=73.82 Aligned_cols=168 Identities=13% Similarity=0.126 Sum_probs=110.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 60 Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
..++++-++...+.++.+++. .+-+|-|.-+ ++++ .|.+.. .......+..++..+....+|+|+.|-
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDT-pGA~-pG~~AE---------e~Gqa~aIAr~l~ams~l~VPiISVVi 267 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDT-PGAY-AGIKAE---------ELGQGEAIAFNLREMFGLRVPIIATVI 267 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeC-CCcC-CCHHHH---------HHhHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 468899999999999988765 3455655555 4444 232221 122345566777788899999999999
Q ss_pred hhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 140 GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 140 G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
|.+.+||.....+||++++.+++.++. +.|.+.++.++....-...+.+. -.+++++++++|+||+|++.
T Consensus 268 GeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAea----lkitA~dL~~~GiID~II~E 337 (431)
T PLN03230 268 GEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAEA----LRITAAELVKLGVVDEIVPE 337 (431)
T ss_pred CCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHHH----cCCCHHHHHhCCCCeEeccC
Confidence 999666655555789999999988662 23444444444443333344443 38999999999999999985
Q ss_pred C-----CChhH----HHHHHHHHHHHHhhcCHHHHHHHH
Q psy503 220 N-----PNQNA----AYLASLRIAEDIAHNGPIAVRMAK 249 (333)
Q Consensus 220 ~-----~~~~~----l~~~a~~~a~~ia~~~~~a~~~~K 249 (333)
. .+++. +.+...+...++...++..+...+
T Consensus 338 p~ggAh~d~~~~~~~l~~~i~~~l~~L~~~~~~~l~~~R 376 (431)
T PLN03230 338 PLGGAHSDPLQASKNIKEVILRHMKELMKMDPEELLQDR 376 (431)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2 12222 223334455667777877665543
No 115
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.44 E-value=3.4e-05 Score=72.80 Aligned_cols=167 Identities=13% Similarity=0.119 Sum_probs=109.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 59 ~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
.-.++++-.+...+.++.+++- .+-+|-|.-+ +++++ |.+-. .....+.+..++..+.....|+|+.|
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDT-pGa~~-G~~aE---------~~G~~~aia~~l~~~a~~~VP~IsVI 196 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDT-PGAYP-GIGAE---------ERGQSEAIARNLREMARLKVPIICTV 196 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeC-CCCCC-CHHHH---------hccHHHHHHHHHHHHhCCCCCEEEEE
Confidence 4567899999999999988765 4556666665 55444 43221 11234556677888889999999999
Q ss_pred chhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q psy503 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~ 218 (333)
-|.|.|||......||++++.+++.|+ ++++-|++..|-+. ..++.+..- -..++++++++.|+||+|++
T Consensus 197 iGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II~ 266 (319)
T PRK05724 197 IGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEIIP 266 (319)
T ss_pred eCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEecc
Confidence 999988887655569999999998876 33444444433332 123333333 56789999999999999998
Q ss_pred CC-----CChhH----HHHHHHHHHHHHhhcCHHHHHH
Q psy503 219 QN-----PNQNA----AYLASLRIAEDIAHNGPIAVRM 247 (333)
Q Consensus 219 ~~-----~~~~~----l~~~a~~~a~~ia~~~~~a~~~ 247 (333)
.. .++++ +.+...+-.+++...++..+..
T Consensus 267 Ep~gga~~~~~~~~~~l~~~i~~~l~~l~~~~~~~l~~ 304 (319)
T PRK05724 267 EPLGGAHRDPEAAAAALKEALLEALAELKGLSPEELLE 304 (319)
T ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 52 22222 2222334445555666655544
No 116
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.44 E-value=3e-05 Score=73.05 Aligned_cols=166 Identities=13% Similarity=0.115 Sum_probs=106.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 59 ~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
...++++-.+...+.++.+++- .+-+|-|.-+ +++++ |.+.. .......+..++..+....+|+|+.|
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDT-pGa~~-g~~aE---------~~G~~~aia~~l~a~s~~~VP~IsVV 196 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERF-KMPIITFIDT-PGAYP-GIGAE---------ERGQSEAIARNLREMARLGVPVICTV 196 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEEC-CCCCC-CHHHH---------HHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 3668899999999999988765 3556666555 55443 32211 11234556677777888999999999
Q ss_pred chhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhh-hcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceec
Q psy503 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQ-RLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLT 217 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~-~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv 217 (333)
-|.|.|||......||++++.+++.|+ ++++-|+.. .+....-...+.+ -..+++.++++.|+||.|+
T Consensus 197 iGeggsGGAla~~~aD~v~m~~~a~~s-------VisPEg~a~Il~kd~~~a~~aae----~~~~ta~~l~~~G~iD~II 265 (316)
T TIGR00513 197 IGEGGSGGALAIGVGDKVNMLEYSTYS-------VISPEGCAAILWKDASKAPKAAE----AMKITAPDLKELGLIDSII 265 (316)
T ss_pred ecccccHHHhhhccCCEEEEecCceEE-------ecCHHHHHHHhccchhhHHHHHH----HccCCHHHHHHCCCCeEec
Confidence 999977777555579999999999876 333344443 3333211222223 2677999999999999999
Q ss_pred CCC-----CChhH----HHHHHHHHHHHHhhcCHHHHHH
Q psy503 218 PQN-----PNQNA----AYLASLRIAEDIAHNGPIAVRM 247 (333)
Q Consensus 218 ~~~-----~~~~~----l~~~a~~~a~~ia~~~~~a~~~ 247 (333)
|.. .+++. +.+...+..+++...++..+..
T Consensus 266 ~ep~~ga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~ 304 (316)
T TIGR00513 266 PEPLGGAHRNPLAAAASLKEQLLADLATLDQLSTEELKN 304 (316)
T ss_pred cCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 842 22222 2222234445555666655543
No 117
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.41 E-value=4.6e-06 Score=73.94 Aligned_cols=136 Identities=15% Similarity=0.086 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 62 LNATLVEEILTAVEAIRGDEEVR--CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~--vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
++..+...+.+.|..++..+..+ .+.|.+-|| ++ .....++..|..++.||++.+.
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG-------~v---------------~ag~aI~d~i~~~~~~V~t~v~ 89 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYIDSEGG-------DI---------------DAGFAIFNMIRFVKPKVFTIGV 89 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-------CH---------------HHHHHHHHHHHhCCCCEEEEEE
Confidence 66788888888888877622223 334444422 22 1123456666778899999999
Q ss_pred hhhhHhhHHHHHhCCE--EEEeCCeEEeccccccCccCChhhh---------------hhccccc--CHHHHHHHHHcCC
Q psy503 140 GSAYGGGLEMALACDI--RVAASNVRMGLVETKLAIIPGAGGT---------------QRLPRIV--GIPLAKELIYTGR 200 (333)
Q Consensus 140 G~a~GgG~~Lal~cD~--rias~~a~f~~pe~~~Gl~p~~g~~---------------~~L~r~i--G~~~a~~llltG~ 200 (333)
|.|.+.|..++++||- |++.+++.|.+-...-++.....-. ..+...- .......++-...
T Consensus 90 G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~ 169 (197)
T PRK14512 90 GLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDF 169 (197)
T ss_pred eeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCc
Confidence 9999999999999985 8999999887655433321111100 0111112 2445666666778
Q ss_pred CCCHHHHHHcCCcceecCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~ 219 (333)
.++|+||+++||||+|+++
T Consensus 170 ~lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 170 WLDSSSAVKYGLVFEVVET 188 (197)
T ss_pred ccCHHHHHHcCCccEeecC
Confidence 8999999999999999986
No 118
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.37 E-value=6.5e-05 Score=77.09 Aligned_cols=169 Identities=9% Similarity=0.046 Sum_probs=111.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 59 ~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
..+++++-++...+.++.++.. .+-+|-|.-+ +++++ |.+... ......+...+..+....+|+|+.|
T Consensus 220 fG~~~peGyRKAlRlmkLAekf-gLPIVtLVDT-pGA~p-G~~AEe---------~Gq~~aIArnl~amasl~VP~ISVV 287 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHH-GFPIVTFIDT-PGAYA-DLKSEE---------LGQGEAIAHNLRTMFGLKVPIVSIV 287 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEEC-CCcCC-CchhHH---------HhHHHHHHHHHHHHhCCCCCEEEEE
Confidence 4567888899999999888765 3455555554 44443 322222 1234556677778889999999999
Q ss_pred chhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q psy503 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~ 218 (333)
-|.|.|||......||++++.++++|+. +.|.++++..+...--...|. ..-.++|++.+++|+||.|+|
T Consensus 288 iGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~~~A~eAA----e~lkiTa~dL~~lGiiD~IIp 357 (762)
T PLN03229 288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKAAPKAA----EKLRITAQELCRLQIADGIIP 357 (762)
T ss_pred eCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCcccHHHHH----HHcCCCHHHHHhCCCCeeecc
Confidence 9999888888777899999999987662 234444444444332222333 345899999999999999998
Q ss_pred CC-----CChhH----HHHHHHHHHHHHhhcCHHHHHHHH
Q psy503 219 QN-----PNQNA----AYLASLRIAEDIAHNGPIAVRMAK 249 (333)
Q Consensus 219 ~~-----~~~~~----l~~~a~~~a~~ia~~~~~a~~~~K 249 (333)
.. .+++. +-....+...++...++..+...+
T Consensus 358 Ep~ggAh~d~~~~~~~l~~~i~~~L~~l~~~~~~~l~~~R 397 (762)
T PLN03229 358 EPLGGAHADPSWTSQQIKIAINENMDELGKMDTEELLKHR 397 (762)
T ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 42 12222 223333455566677777665443
No 119
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.36 E-value=2.4e-06 Score=74.71 Aligned_cols=136 Identities=15% Similarity=0.157 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHHHHhcC-CC-ceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 62 LNATLVEEILTAVEAIRGD-EE-VRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d-~~-v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
++.++...+...|..++.+ +. .-.+.|.+.|| |+ .....+...|..++.|++..+.
T Consensus 25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG-------~v---------------~~g~~i~~~i~~~~~~v~t~~~ 82 (182)
T PF00574_consen 25 IDEESANRLISQLLYLENEDKNKPINIYINSPGG-------DV---------------DAGLAIYDAIRSSKAPVTTVVL 82 (182)
T ss_dssp BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEB-------CH---------------HHHHHHHHHHHHSSSEEEEEEE
T ss_pred cCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCC-------cc---------------HHHHHHHHHHHhcCCCeEEEEe
Confidence 7889999999988877422 22 22344555522 22 2234566777788999999999
Q ss_pred hhhhHhhHHHHHhCCE--EEEeCCeEEeccccccCccCChhhh---------------hhcccc--cCHHHHHHHHHcCC
Q psy503 140 GSAYGGGLEMALACDI--RVAASNVRMGLVETKLAIIPGAGGT---------------QRLPRI--VGIPLAKELIYTGR 200 (333)
Q Consensus 140 G~a~GgG~~Lal~cD~--rias~~a~f~~pe~~~Gl~p~~g~~---------------~~L~r~--iG~~~a~~llltG~ 200 (333)
|.|.+.|..++++||. |++.+++.|.+-+...+......-. ..+... .......+++-...
T Consensus 83 G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~ 162 (182)
T PF00574_consen 83 GLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDT 162 (182)
T ss_dssp EEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTE
T ss_pred CccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCc
Confidence 9999999999999999 8999999999888765543211111 011111 22445556666667
Q ss_pred CCCHHHHHHcCCcceecCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~ 219 (333)
.++++||+++||||+|+.+
T Consensus 163 ~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 163 WLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp EEEHHHHHHHTSSSEEESS
T ss_pred cccHHHHHHcCCCCEeccC
Confidence 7899999999999999874
No 120
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.27 E-value=2.3e-05 Score=69.55 Aligned_cols=136 Identities=13% Similarity=0.158 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 62 LNATLVEEILTAVEAIRGDEEVR--CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~--vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
++.++..++...|-.++.++..+ .+-|.+.||. +. ....++..+...+.||...+-
T Consensus 39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~-------v~---------------~g~aIyd~m~~~~~~V~Tv~~ 96 (200)
T CHL00028 39 VDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGS-------VI---------------SGLAIYDTMQFVKPDVHTICL 96 (200)
T ss_pred ecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcc-------hh---------------hHHHHHHHHHhcCCCEEEEEE
Confidence 88999999999999887543223 3334554332 11 123456667788899999999
Q ss_pred hhhhHhhHHHHHhCC--EEEEeCCeEEeccccccCccCChhh----------------hhhcccccC--HHHHHHHHHcC
Q psy503 140 GSAYGGGLEMALACD--IRVAASNVRMGLVETKLAIIPGAGG----------------TQRLPRIVG--IPLAKELIYTG 199 (333)
Q Consensus 140 G~a~GgG~~Lal~cD--~rias~~a~f~~pe~~~Gl~p~~g~----------------~~~L~r~iG--~~~a~~llltG 199 (333)
|.|.+.|..|++++| .|++.++++|.+-....|..-+... ...+...-| .....+++-..
T Consensus 97 G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~ 176 (200)
T CHL00028 97 GLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERD 176 (200)
T ss_pred EehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcC
Confidence 999999999999999 6999999999887765442111100 011111122 44556677777
Q ss_pred CCCCHHHHHHcCCcceecCC
Q psy503 200 RLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~ 219 (333)
..++|+||+++||||+|+++
T Consensus 177 ~~lta~EA~eyGliD~I~~~ 196 (200)
T CHL00028 177 VFMSATEAKAYGIVDLVAVN 196 (200)
T ss_pred ccCCHHHHHHcCCCcEEeec
Confidence 88999999999999999986
No 121
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.19 E-value=3.2e-05 Score=68.26 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 62 LNATLVEEILTAVEAIRGDEEVRCVLL--RSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~vvVl--~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
++.++...+...|..++.++..+-|+| .+. |+|+. ....++..+..++.|+...+.
T Consensus 35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSp-------GG~v~---------------~g~~I~d~l~~~~~~v~t~~~ 92 (191)
T TIGR00493 35 VNDSVANLIVAQLLFLEAEDPEKDIYLYINSP-------GGSIT---------------AGLAIYDTMQFIKPDVSTICI 92 (191)
T ss_pred EChHHHHHHHHHHHHhhccCCCCCEEEEEECC-------CCCHH---------------HHHHHHHHHHhcCCCEEEEEE
Confidence 677888888888888876543333333 333 22321 112344455556667777778
Q ss_pred hhhhHhhHHHHHhCC--EEEEeCCeEEeccccccCccCChhhh---------------hhcccccC--HHHHHHHHHcCC
Q psy503 140 GSAYGGGLEMALACD--IRVAASNVRMGLVETKLAIIPGAGGT---------------QRLPRIVG--IPLAKELIYTGR 200 (333)
Q Consensus 140 G~a~GgG~~Lal~cD--~rias~~a~f~~pe~~~Gl~p~~g~~---------------~~L~r~iG--~~~a~~llltG~ 200 (333)
|.|.+.|..+++++| .|++.+++.|.+-+...|......-. ..+.+.-| .....+++-.+.
T Consensus 93 G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~ 172 (191)
T TIGR00493 93 GQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDF 172 (191)
T ss_pred EeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCc
Confidence 999999998888765 69999999998866543321110000 11222223 456667777888
Q ss_pred CCCHHHHHHcCCcceecC
Q psy503 201 LVDSTEAKSIGLVNTLTP 218 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~ 218 (333)
.++|+||+++||||+|+.
T Consensus 173 ~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 173 FMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred cCcHHHHHHcCCccEEec
Confidence 999999999999999975
No 122
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=98.15 E-value=2.1e-06 Score=73.10 Aligned_cols=98 Identities=21% Similarity=0.254 Sum_probs=63.3
Q ss_pred HhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccC------------------
Q psy503 127 LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG------------------ 188 (333)
Q Consensus 127 l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG------------------ 188 (333)
+....|||||.++|.+..++..|+++||-+++.+.+.++...+....+- ..-+-..+|
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~----~~~~l~k~GV~~~~~~~g~~K~~~~~~ 77 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLF----FKGLLEKLGVKVEVVRSGEYKSAGFPR 77 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-----HHHHHHTT-EEEEEESSTTCCCCCTT
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhcccc----HHHHHHHCCCeEEEEecCccccccCcC
Confidence 3567899999999999999999999999999999988775443322110 111111222
Q ss_pred --------------------------------HHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHH
Q psy503 189 --------------------------------IPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLR 232 (333)
Q Consensus 189 --------------------------------~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~ 232 (333)
.....+-+..|..+++++|++.||||++-. .++++....+
T Consensus 78 ~~~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~----~~~~~~~l~~ 149 (154)
T PF01343_consen 78 DPMSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGT----FDEAIARLAK 149 (154)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETS----HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCC----HHHHHHHHHH
Confidence 112223467899999999999999999987 3555554443
No 123
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.13 E-value=6.9e-05 Score=68.71 Aligned_cols=98 Identities=17% Similarity=0.218 Sum_probs=78.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 59 ~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
.+.++.+...++.++++...++..+ .++|..-||. + ..-.++...+..++.++++.|
T Consensus 69 ~~~I~i~dse~v~raI~~~~~~~~I-dLii~TpGG~-------v---------------~AA~~I~~~l~~~~~~v~v~V 125 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREAPKDKPI-DLIIHTPGGL-------V---------------DAAEQIARALREHPAKVTVIV 125 (285)
T ss_pred ceeEcHhhHHHHHHHHHhcCCCCce-EEEEECCCCc-------H---------------HHHHHHHHHHHhCCCCEEEEE
Confidence 3668889999999999988777654 4445554232 1 222356667778999999999
Q ss_pred chhhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhh
Q psy503 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGG 179 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~ 179 (333)
+..|+.+|..+||+||-+++++.+.+|--+.++|-.|..+.
T Consensus 126 P~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~si 166 (285)
T PF01972_consen 126 PHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAASI 166 (285)
T ss_pred CcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHHH
Confidence 99999999999999999999999999999999998886543
No 124
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=98.08 E-value=0.00024 Score=65.84 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=91.8
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHH
Q psy503 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDE----EVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (333)
Q Consensus 47 ~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~----~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 122 (333)
.|+++-.+..-..-++....-..+.++++.+.+|+ .+-+|.|.-+ ++ .-+.+-. .....+. .+..
T Consensus 60 ~v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dS-gG-----aRlqEg~----~~L~~~a-~i~~ 128 (274)
T TIGR03133 60 PVVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDT-GG-----VRLQEAN----AGLIAIA-EIMR 128 (274)
T ss_pred EEEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcC-CC-----cChhhhH----HHHHHHH-HHHH
Confidence 35555555555667888888888999999887522 2235555444 32 3332200 0011111 1122
Q ss_pred HHHHHhcCCCcEEEEechh--hhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCH--HHHHHHHHc
Q psy503 123 MTCQLESIPVPVLAVLDGS--AYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI--PLAKELIYT 198 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~--a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~--~~a~~lllt 198 (333)
....+... .|+|+.|-|+ |.||+..++.+||++|+++++++++.-. .......|. -...+-.|.
T Consensus 129 ~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP-----------~VIe~~~G~e~~~~~d~~l~ 196 (274)
T TIGR03133 129 AILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGP-----------EVIEQEAGVEEFDSRDRALV 196 (274)
T ss_pred HHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCH-----------HHHHHhcCCCccCHHHhccc
Confidence 22333334 9999999999 8999999999999999999887765221 111111221 123344455
Q ss_pred CCCCCHHHHHHcCCcceecCC
Q psy503 199 GRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 199 G~~isa~eAl~~Glv~~vv~~ 219 (333)
.+.+.++.....|++|.++++
T Consensus 197 ~~~lGG~~~~~sG~~D~~v~d 217 (274)
T TIGR03133 197 WRTTGGKHRFLSGDADVLVED 217 (274)
T ss_pred ccccchHhHhhcccceEEeCC
Confidence 566777788889999999997
No 125
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.08 E-value=0.00011 Score=75.49 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHh
Q psy503 66 LVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGG 145 (333)
Q Consensus 66 ~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~Gg 145 (333)
.+.++.++|+.+..|+.|++|||.-.+ +.|..+.. .+.+++.+..+....|||||..++.+ -+
T Consensus 77 ~l~~i~~~i~~A~~D~~IkgIvL~i~~----~~g~~~~~------------~~ei~~ai~~fk~sgKpVvA~~~~~~-s~ 139 (584)
T TIGR00705 77 SLFDIVNAIRQAADDRRIEGLVFDLSN----FSGWDSPH------------LVEIGSALSEFKDSGKPVYAYGTNYS-QG 139 (584)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEccC----CCCCCHHH------------HHHHHHHHHHHHhcCCeEEEEEcccc-ch
Confidence 577999999999999999999999862 11322221 23345555666677899999888775 56
Q ss_pred hHHHHHhCCEEEEeCCeEEec
Q psy503 146 GLEMALACDIRVAASNVRMGL 166 (333)
Q Consensus 146 G~~Lal~cD~rias~~a~f~~ 166 (333)
|..|+.+||-+++.+.+.+++
T Consensus 140 ~YylAs~AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 140 QYYLASFADEIILNPMGSVDL 160 (584)
T ss_pred hhhhhhhCCEEEECCCceEEe
Confidence 899999999999999877754
No 126
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.01 E-value=8.4e-05 Score=65.79 Aligned_cols=136 Identities=14% Similarity=0.117 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 62 LNATLVEEILTAVEAIRGDEEVR--CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~--vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
++.++..++...|..++.++..+ .+.|.+.||..+ + ...++..+...+.||...+-
T Consensus 34 i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~-~---------------------g~aIyd~m~~~~~~V~t~~~ 91 (196)
T PRK12551 34 VTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVY-D---------------------GLGIFDTMQHVKPDVHTVCV 91 (196)
T ss_pred ecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchh-h---------------------HHHHHHHHHhcCCCEEEEEE
Confidence 88899999999999887543223 333455423211 1 12455666677889999999
Q ss_pred hhhhHhhHHHHHhCCE--EEEeCCeEEeccccccCccCChhhh---------------hhcccccC--HHHHHHHHHcCC
Q psy503 140 GSAYGGGLEMALACDI--RVAASNVRMGLVETKLAIIPGAGGT---------------QRLPRIVG--IPLAKELIYTGR 200 (333)
Q Consensus 140 G~a~GgG~~Lal~cD~--rias~~a~f~~pe~~~Gl~p~~g~~---------------~~L~r~iG--~~~a~~llltG~ 200 (333)
|.|.+.|..|++++|. |++.+++++.+-....|..-...-. ..+.+..| .....+++-...
T Consensus 92 G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~ 171 (196)
T PRK12551 92 GLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDF 171 (196)
T ss_pred EEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCc
Confidence 9999999999999985 8889999888766543321100000 01112223 345556666778
Q ss_pred CCCHHHHHHcCCcceecCC
Q psy503 201 LVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~ 219 (333)
.++|+||+++||||+|+++
T Consensus 172 ~msa~EA~eyGliD~I~~~ 190 (196)
T PRK12551 172 FMSPSEAVEYGLIDLVIDK 190 (196)
T ss_pred CCCHHHHHHcCCCcEEecc
Confidence 8899999999999999985
No 127
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.99 E-value=9.8e-05 Score=66.43 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 62 LNATLVEEILTAVEAIRGD---EEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d---~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
+|..+...+...|..++.. .++ .+.|.+.||. ..+| ..++..+...+-||...+
T Consensus 63 Idd~~a~~i~aqLl~L~~~~~~~~I-~lyINSpGGs-v~aG---------------------laIyd~m~~~~~~V~tv~ 119 (221)
T PRK14514 63 IDDYTANTIQAQLLYLDSVDPGKDI-SIYINSPGGS-VYAG---------------------LGIYDTMQFISSDVATIC 119 (221)
T ss_pred EcHHHHHHHHHHHHHHhccCCCCCE-EEEEECCCcc-hhhH---------------------HHHHHHHHhcCCCEEEEE
Confidence 7788888888877766542 333 3344555332 2212 235556677788999999
Q ss_pred chhhhHhhHHHHHhCCE--EEEeCCeEEeccccccCccCChhhh---------------hhcccccC--HHHHHHHHHcC
Q psy503 139 DGSAYGGGLEMALACDI--RVAASNVRMGLVETKLAIIPGAGGT---------------QRLPRIVG--IPLAKELIYTG 199 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD~--rias~~a~f~~pe~~~Gl~p~~g~~---------------~~L~r~iG--~~~a~~llltG 199 (333)
-|.|.+.|..|++++|. |++.+++.|.+-...-|......-. ..+.+..| .....+++-..
T Consensus 120 ~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd 199 (221)
T PRK14514 120 TGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRD 199 (221)
T ss_pred EEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcC
Confidence 99999999999999996 8999999988776643321111100 01111223 44556667778
Q ss_pred CCCCHHHHHHcCCcceecCC
Q psy503 200 RLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~ 219 (333)
..++|+||+++||||+|++.
T Consensus 200 ~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 200 YWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred ccCCHHHHHHcCCccEEeec
Confidence 88999999999999999874
No 128
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.98 E-value=0.00079 Score=61.34 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=97.0
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAI-RGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~-~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
++.-..|-=|+|. ..++.+-...+.+.+... +.+..+-+|.|.-. ++ |-.|. .++.....+.+.++
T Consensus 30 ~G~~V~vIa~~~~--~~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDt-pG-~~~g~---------~aE~~G~~~a~A~l 96 (238)
T TIGR03134 30 AGGKVTVIGVVPD--AEVGLDEALALAQAVLDVIEADDKRPIVVLVDT-PS-QAYGR---------REELLGINQALAHL 96 (238)
T ss_pred CCEEEEEEEECCC--CcCChHHHHHHHHHHHHHHHhcCCCCEEEEEeC-CC-CCCCH---------HHHHHHHHHHHHHH
Confidence 4444444445554 268877777788888774 55567777777766 44 33232 12333344455555
Q ss_pred HHHHh---cCCCcEEEEechhhhHhhHH-HHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcC
Q psy503 124 TCQLE---SIPVPVLAVLDGSAYGGGLE-MALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTG 199 (333)
Q Consensus 124 ~~~l~---~~~kP~Iaav~G~a~GgG~~-Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG 199 (333)
+..+. ..+.|+|+.|-|.++|||+. +.+.+|.++|.+++.++ ..++.+++..+.+-. ....++.-.=
T Consensus 97 ~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------vm~~e~aa~I~~~~~--~~~~e~a~~~ 167 (238)
T TIGR03134 97 AKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVH-------VMDLESMARVTKRSV--EELEALAKSS 167 (238)
T ss_pred HHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEE-------ecCHHHHHHHHccCH--hHHHHHHHhh
Confidence 55555 45599999999999998874 55558888887777655 455555554444433 2334443322
Q ss_pred --CCCCHHHHHHcCCcceecCCC
Q psy503 200 --RLVDSTEAKSIGLVNTLTPQN 220 (333)
Q Consensus 200 --~~isa~eAl~~Glv~~vv~~~ 220 (333)
...+.+.+.++|+||+|+++.
T Consensus 168 ~~~a~~~~~~~~~G~vd~vi~~~ 190 (238)
T TIGR03134 168 PVFAPGIENFVKLGGVHALLDVA 190 (238)
T ss_pred hhhccCHHHHHhCCCccEEeCCC
Confidence 245778899999999999973
No 129
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.93 E-value=0.00017 Score=64.00 Aligned_cols=135 Identities=15% Similarity=0.168 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCc--eEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 61 ALNATLVEEILTAVEAIRGDEEV--RCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 61 alt~~~~~eL~~~l~~~~~d~~v--~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
.++.++...+...|-.++.++.- -.|-|.+.||..|+ ...++..+...+-||...+
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~----------------------GlaIyd~m~~~~~~V~Ti~ 92 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYA----------------------GLAIYDTMRYIKAPVSTIC 92 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhh----------------------HHHHHHHHHhcCCCEEEEE
Confidence 47888888888888777754321 23444555333221 1345666777888999999
Q ss_pred chhhhHhhHHHHHhCCE--EEEeCCeEEeccccccCccCChhhhh-----------------hcccccC--HHHHHHHHH
Q psy503 139 DGSAYGGGLEMALACDI--RVAASNVRMGLVETKLAIIPGAGGTQ-----------------RLPRIVG--IPLAKELIY 197 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD~--rias~~a~f~~pe~~~Gl~p~~g~~~-----------------~L~r~iG--~~~a~~lll 197 (333)
.|.|.+.|..|++++|- |++.+++++.+-....|.. +.... .+.+.-| ...-.+++-
T Consensus 93 ~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~ 170 (201)
T PRK14513 93 VGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDME 170 (201)
T ss_pred EeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhc
Confidence 99999999999999996 9999999988877654431 11111 1112223 445556666
Q ss_pred cCCCCCHHHHHHcCCcceecCC
Q psy503 198 TGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 198 tG~~isa~eAl~~Glv~~vv~~ 219 (333)
....++|+||+++||||+|+++
T Consensus 171 rd~~msa~EA~eyGliD~I~~~ 192 (201)
T PRK14513 171 RDYFMSPEEAKAYGLIDSVIEP 192 (201)
T ss_pred cCcccCHHHHHHcCCCcEEecc
Confidence 7788899999999999999985
No 130
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00026 Score=68.93 Aligned_cols=149 Identities=14% Similarity=0.219 Sum_probs=109.0
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (333)
++.|.++.++. .+++.+.+.+.+.++.++++.. .+|||.=+.++ .+.+.+.++.
T Consensus 25 ~~~v~vi~i~g-----~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPG--------------------Gl~~sm~~iv 78 (436)
T COG1030 25 EKKVYVIEIDG-----AIDPASADYLQRALQSAEEENA-AAVVLELDTPG--------------------GLLDSMRQIV 78 (436)
T ss_pred CCeEEEEEecC-----ccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCC--------------------chHHHHHHHH
Confidence 56788888875 4999999999999999998763 34444332133 1346678899
Q ss_pred HHHhcCCCcEEEEe---chhhhHhhHHHHHhCCEEEEeCCeEEeccccccCc--cC-Chh-hhh------hccccc--CH
Q psy503 125 CQLESIPVPVLAVL---DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAI--IP-GAG-GTQ------RLPRIV--GI 189 (333)
Q Consensus 125 ~~l~~~~kP~Iaav---~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl--~p-~~g-~~~------~L~r~i--G~ 189 (333)
+.|.+.+.|++..| .+.|..+|.-++++||+..+.+.+.+|-...-.+- .+ ... ... -+.+.- ..
T Consensus 79 ~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN~ 158 (436)
T COG1030 79 RAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRNP 158 (436)
T ss_pred HHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCCh
Confidence 99999999988887 44799999999999999999998888765432221 11 111 011 111222 25
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 190 ~~a~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
..|.+++.-...++++||++.|++|-+..+
T Consensus 159 ~~ae~~v~~~~~l~a~eA~~~~vid~iA~~ 188 (436)
T COG1030 159 TWAERFVTENLSLTAEEALRQGVIDLIARD 188 (436)
T ss_pred HHHHHHhhhccCCChhHHHhcCccccccCC
Confidence 578899999999999999999999998886
No 131
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=97.86 E-value=7.6e-05 Score=60.71 Aligned_cols=68 Identities=18% Similarity=0.320 Sum_probs=53.7
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHH
Q psy503 230 SLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRV 309 (333)
Q Consensus 230 a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~ 309 (333)
+.+..+.|...+|.++..+-+.++ ++... ++.+.+..|+....++
T Consensus 33 a~~~~~~l~~~SP~Sl~vt~~~l~---~~~~~--------------------------------sl~e~l~~E~~~a~~~ 77 (118)
T PF13766_consen 33 AQKTLETLRSGSPLSLKVTFEQLR---RGRNL--------------------------------SLAECLRMEYRLASRC 77 (118)
T ss_dssp HHHHHHHHCCS-HHHHHHHHHHHH---CCTTS---------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHH---HhhhC--------------------------------CHHHHHHHHHHHHHHH
Confidence 556667888999999999999999 77766 9999999999999999
Q ss_pred hcCccHHHHHHHHhc--cCCCCCCC
Q psy503 310 IRTQDRVEGLKSFLG--KYKPVYKG 332 (333)
Q Consensus 310 ~~~~d~~egi~afle--kr~p~~~~ 332 (333)
+..+||.|||+|.|- .+.|+|+-
T Consensus 78 ~~~~DF~EGVRA~LIDKd~~P~W~p 102 (118)
T PF13766_consen 78 MRHPDFAEGVRALLIDKDKNPKWSP 102 (118)
T ss_dssp HCCSCHHHHHHHHTTS-------SS
T ss_pred hccchHHHHHHHHHhcCCCCCCCCC
Confidence 999999999999876 46799964
No 132
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.86 E-value=0.00055 Score=64.28 Aligned_cols=150 Identities=16% Similarity=0.210 Sum_probs=88.4
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHH
Q psy503 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDE----EVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (333)
Q Consensus 47 ~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~----~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 122 (333)
.|+++-.+..-..-++.......+..+++.+.++. -+-+|.|.-+ ++ .-+.+-. .....+. .+..
T Consensus 69 ~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dS-GG-----aRlqEg~----~~L~~~a-~i~~ 137 (301)
T PRK07189 69 PVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFET-GG-----VRLQEAN----AGLAAIA-EIMR 137 (301)
T ss_pred EEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-CC-----cCccchH----HHHHHHH-HHHH
Confidence 35556666555678888889999999999887664 1445555544 32 2332210 0011111 1122
Q ss_pred HHHHHhcCCCcEEEEechh--hhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccC--HHHHHHHHHc
Q psy503 123 MTCQLESIPVPVLAVLDGS--AYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG--IPLAKELIYT 198 (333)
Q Consensus 123 l~~~l~~~~kP~Iaav~G~--a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG--~~~a~~lllt 198 (333)
....+... +|+|+.|-|+ |+||+..++.+||++|+++++.+++.... ......| .-...+.-+.
T Consensus 138 ~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaGP~-----------VIe~~~G~e~~d~~d~~~v 205 (301)
T PRK07189 138 AIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSGPE-----------VIEQEAGVEEFDSRDRALV 205 (301)
T ss_pred HHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccCHH-----------HHHHhcCCcccCHHHhccc
Confidence 22233344 9999999999 99999999999999999998877652211 1111111 0111222222
Q ss_pred CCCCCHHHHHHcCCcceecCC
Q psy503 199 GRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 199 G~~isa~eAl~~Glv~~vv~~ 219 (333)
.+.+.+......|.+|.++++
T Consensus 206 w~~lGG~h~~~sG~~D~~v~d 226 (301)
T PRK07189 206 WRTTGGKHRYLSGLADALVDD 226 (301)
T ss_pred ccccCcceeeecccceEEeCC
Confidence 223333445568999999997
No 133
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.84 E-value=0.0019 Score=60.68 Aligned_cols=160 Identities=15% Similarity=0.166 Sum_probs=99.9
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHH--HHHHH
Q psy503 45 RPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSF--VSTLR 121 (333)
Q Consensus 45 ~~~v~~Itln~p~-~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~--~~~~~ 121 (333)
++.-..|.-|.+. ...+++....+.+.++++.+... .+-+|.|... ++ ..+++ ....+ .....
T Consensus 119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~ds-gG-----armqE-------gi~sL~~~ak~~ 184 (292)
T PRK05654 119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSAS-GG-----ARMQE-------GLLSLMQMAKTS 184 (292)
T ss_pred CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcC-CC-----cchhh-------hhhHHHhHHHHH
Confidence 5554445555543 67889999999999999988765 4567777655 43 22222 11111 11222
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHH-HHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLE-MALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~-Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
..+.++.....|.|+.+-|+|.||+.. .++.+|++|+.+++.+++-..+ .+...++. ++ .-+
T Consensus 185 ~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e----~l--pe~ 247 (292)
T PRK05654 185 AALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVRE----KL--PEG 247 (292)
T ss_pred HHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhh----hh--hhh
Confidence 334445567899999999999999765 5778999999998877753221 11111111 11 111
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhh
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAH 239 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~ 239 (333)
.-+++-+.+.|+||.|+++ .++.+...++.+.+..
T Consensus 248 ~~~ae~~~~~G~vD~Vv~~----~e~r~~l~~~L~~~~~ 282 (292)
T PRK05654 248 FQRAEFLLEHGAIDMIVHR----RELRDTLASLLALHTK 282 (292)
T ss_pred hcCHHHHHhCCCCcEEECH----HHHHHHHHHHHHHHhc
Confidence 2267777889999999996 6666655555554443
No 134
>PRK10949 protease 4; Provisional
Probab=97.77 E-value=0.00047 Score=71.14 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhH
Q psy503 65 TLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYG 144 (333)
Q Consensus 65 ~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~G 144 (333)
-.+.++.++|+.+..|+.|++|||.-.+.. |..+. ..+.+.+.+..+....||+||.-+.. --
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~g----G~~~a------------~~~eI~~ai~~fk~sGKpVvA~~~~~-~s 157 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNFA----GADQP------------SMQYIGKALREFRDSGKPVYAVGDSY-SQ 157 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCCC----CccHH------------HHHHHHHHHHHHHHhCCeEEEEecCc-cc
Confidence 345689999999999999999999987321 21111 12334555666667789999854444 45
Q ss_pred hhHHHHHhCCEEEEeCCeEEec
Q psy503 145 GGLEMALACDIRVAASNVRMGL 166 (333)
Q Consensus 145 gG~~Lal~cD~rias~~a~f~~ 166 (333)
++..|+.+||-+++.+.+.+++
T Consensus 158 ~~YyLASaAD~I~l~P~G~v~~ 179 (618)
T PRK10949 158 GQYYLASFANKIYLSPQGVVDL 179 (618)
T ss_pred hhhhhhhhCCEEEECCCceEEE
Confidence 6899999999999999877664
No 135
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.68 E-value=0.0031 Score=59.00 Aligned_cols=157 Identities=12% Similarity=0.172 Sum_probs=97.3
Q ss_pred CCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHH--HHHHH
Q psy503 45 RPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSF--VSTLR 121 (333)
Q Consensus 45 ~~~-v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~--~~~~~ 121 (333)
++. |+++-.+..-..-+++....+.+.++++.+... .+-+|.+... +++ -+++ ....+ .....
T Consensus 118 ~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dS-gGa-----RmqE-------g~~sL~~~ak~~ 183 (285)
T TIGR00515 118 YGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSAS-GGA-----RMQE-------ALLSLMQMAKTS 183 (285)
T ss_pred CCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcC-CCc-----cccc-------chhHHHhHHHHH
Confidence 444 444444444467889999999999999988755 4566777665 432 1211 11111 11222
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHH-HHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCC
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLE-MALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~-Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~ 200 (333)
..+.++.....|.|+++-|+|.||+.. +++.+|++++.+++.+++.... .+...+|. -+.-+
T Consensus 184 ~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e------~lpe~ 246 (285)
T TIGR00515 184 AALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVRE------KLPEG 246 (285)
T ss_pred HHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcC------ccchh
Confidence 234455667899999999999999765 6679999999999887753322 11111111 01111
Q ss_pred CCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHH
Q psy503 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAED 236 (333)
Q Consensus 201 ~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ 236 (333)
.-+++-+++.|+||.|+++ .++.+...++.+.
T Consensus 247 ~q~ae~~~~~G~vD~iv~~----~~~r~~l~~~L~~ 278 (285)
T TIGR00515 247 FQTSEFLLEHGAIDMIVHR----PEMKKTLASLLAK 278 (285)
T ss_pred cCCHHHHHhCCCCcEEECc----HHHHHHHHHHHHH
Confidence 2256667889999999996 5555555555443
No 136
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.44 E-value=0.003 Score=56.83 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCc--eEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Q psy503 61 ALNATLVEEILTAVEAIRGDEEV--RCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (333)
Q Consensus 61 alt~~~~~eL~~~l~~~~~d~~v--~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 138 (333)
.++.++...+...|-.++.++.. --+-|.+.||..|+ |-=+.. ......++..+...+-||...+
T Consensus 48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~-G~~iG~------------v~~glaIyD~m~~ik~~V~Tv~ 114 (222)
T PRK12552 48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYT-GDAIGF------------ETEAFAICDTMRYIKPPVHTIC 114 (222)
T ss_pred chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccc-cccccc------------cccHHHHHHHHHhcCCCeEEEE
Confidence 34455888888888777654321 23445666444343 310000 0112234555566677889999
Q ss_pred chhhhHhhHHHHHhCCE--EEEeCCeEEeccccccCccCChhhhh-----------------hcccccC--HHHHHHHHH
Q psy503 139 DGSAYGGGLEMALACDI--RVAASNVRMGLVETKLAIIPGAGGTQ-----------------RLPRIVG--IPLAKELIY 197 (333)
Q Consensus 139 ~G~a~GgG~~Lal~cD~--rias~~a~f~~pe~~~Gl~p~~g~~~-----------------~L~r~iG--~~~a~~lll 197 (333)
-|.|.+.+..|++++|- |++.++++|.+.....|.. + .... .+.+.-| ...-.+++-
T Consensus 115 ~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~-G-~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~ 192 (222)
T PRK12552 115 IGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR-G-QATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTD 192 (222)
T ss_pred EeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc-c-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhc
Confidence 99999999999999996 8999999988877654431 1 1110 1111112 334444555
Q ss_pred cCCCCCHHHHHHcCCcceecCC
Q psy503 198 TGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 198 tG~~isa~eAl~~Glv~~vv~~ 219 (333)
.-..++|+||+++||||+|+.+
T Consensus 193 rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 193 RMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred CCCcCCHHHHHHcCCCcEEecc
Confidence 5677899999999999999975
No 137
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.44 E-value=0.019 Score=53.86 Aligned_cols=155 Identities=11% Similarity=0.131 Sum_probs=91.6
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHH
Q psy503 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ 126 (333)
Q Consensus 47 ~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~ 126 (333)
.|+++-.+..=..-++....-+.+.++++.+.+.. +-+|++... + |.-+++-.. ....+ ......+..
T Consensus 134 ~v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~S-G-----GARmQEg~~----sL~qm-ak~saa~~~ 201 (296)
T CHL00174 134 PVALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCAS-G-----GARMQEGSL----SLMQM-AKISSALYD 201 (296)
T ss_pred EEEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECC-C-----Cccccccch----hhhhh-HHHHHHHHH
Confidence 35555555554678899999999999999887654 456666665 3 233322100 00011 111111222
Q ss_pred -HhcCCCcEEEEechhhhHhhHHH-HHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCH
Q psy503 127 -LESIPVPVLAVLDGSAYGGGLEM-ALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDS 204 (333)
Q Consensus 127 -l~~~~kP~Iaav~G~a~GgG~~L-al~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa 204 (333)
...-..|.|+.+.|+|.||+... ++.||++|+.+++.+++...+ .....+|. -+.-+--++
T Consensus 202 ~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPr-----------VIe~t~ge------~lpe~fq~a 264 (296)
T CHL00174 202 YQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKR-----------VIEQTLNK------TVPEGSQAA 264 (296)
T ss_pred HHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHH-----------HHHHhcCC------cCCcccccH
Confidence 22457999999999999999865 777999999888876643221 00011110 001112257
Q ss_pred HHHHHcCCcceecCCCCChhHHHHHHHHHH
Q psy503 205 TEAKSIGLVNTLTPQNPNQNAAYLASLRIA 234 (333)
Q Consensus 205 ~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a 234 (333)
+-.++.|+||.||+. .++-+...++.
T Consensus 265 e~l~~~G~vD~iV~r----~~lr~~l~~ll 290 (296)
T CHL00174 265 EYLFDKGLFDLIVPR----NLLKGVLSELF 290 (296)
T ss_pred HHHHhCcCceEEEcH----HHHHHHHHHHH
Confidence 778889999999994 55555444443
No 138
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.43 E-value=0.01 Score=60.19 Aligned_cols=151 Identities=14% Similarity=0.233 Sum_probs=97.2
Q ss_pred EEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHh
Q psy503 50 ELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE 128 (333)
Q Consensus 50 ~Itln~p~-~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~ 128 (333)
.|.-|+|. ...+++++-.+...+.++.+++. .+-+|.|.-. ++ |..|.+- +....+....+++..+.
T Consensus 318 ~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs-~G-~~~g~~~---------E~~g~~~~~a~~~~a~~ 385 (512)
T TIGR01117 318 GIIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDV-PG-FLPGVNQ---------EYGGIIRHGAKVLYAYS 385 (512)
T ss_pred EEEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeC-cC-ccccHHH---------HHHHHHHHHHHHHHHHH
Confidence 33344443 44679999999999999988764 5667777666 44 5555321 22334556667788888
Q ss_pred cCCCcEEEEechhhhHhhHHHHH----hCCEEEEeCCeEEeccccccCccCChhhhhhc-ccccC----HHHHHHHH---
Q psy503 129 SIPVPVLAVLDGSAYGGGLEMAL----ACDIRVAASNVRMGLVETKLAIIPGAGGTQRL-PRIVG----IPLAKELI--- 196 (333)
Q Consensus 129 ~~~kP~Iaav~G~a~GgG~~Lal----~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L-~r~iG----~~~a~~ll--- 196 (333)
....|.|+.|-|.+.|||..-.. .+|++++.+++.++. .++.++...+ .+.+. ...+....
T Consensus 386 ~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~ 458 (512)
T TIGR01117 386 EATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRKQKIAE 458 (512)
T ss_pred hCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHHHHHHH
Confidence 89999999999999888654433 289999888877663 3333333322 22111 11111111
Q ss_pred HcCCCCCHHHHHHcCCcceecCC
Q psy503 197 YTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 197 ltG~~isa~eAl~~Glv~~vv~~ 219 (333)
+.-+..++..+.+.|+||.|+++
T Consensus 459 ~~~~~~~~~~~a~~g~vD~VI~P 481 (512)
T TIGR01117 459 YREEFANPYKAAARGYVDDVIEP 481 (512)
T ss_pred HHHhhcCHHHHHhcCCCCeeECh
Confidence 12235588899999999999997
No 139
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.37 E-value=0.0048 Score=62.31 Aligned_cols=139 Identities=20% Similarity=0.263 Sum_probs=88.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
+.++-.+.--...++.......+.++++.+.+.. +-+|.|.-. ++.+ + .+.+-.. ....+-. +..-..++
T Consensus 59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~ds-gGa~--~-r~~eg~~----~l~~~g~-i~~~~~~~ 128 (493)
T PF01039_consen 59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVDS-GGAF--L-RMQEGVE----SLMGMGR-IFRAIARL 128 (493)
T ss_dssp EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEEE-SSBC--G-GGGGHHH----HHHHHHH-HHHHHHHH
T ss_pred EEEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEeccc-cccc--c-ccchhhh----hhhhhHH-HHHHHHHH
Confidence 4444444444678899999999999999887664 445555443 2221 1 3333111 1112222 22333445
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC-eEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHH
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTE 206 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~-a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~e 206 (333)
.. ..|+|+++.|+|.|||..++..||++|+.++ +.+++.. +... + ..+|+.++.++
T Consensus 129 ~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~G--------------------P~vv-~-~~~Ge~~~~~~ 185 (493)
T PF01039_consen 129 SG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAG--------------------PRVV-E-SATGEEVDSEE 185 (493)
T ss_dssp HT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESST--------------------HHHH-H-HHHSSCTSHHH
T ss_pred hc-CCCeEEEEccccccchhhcccccCccccCccceEEEecc--------------------cccc-c-cccCccccchh
Confidence 55 8999999999999999999999999999987 7765321 1111 1 24568888776
Q ss_pred H-------HHcCCcceecCC
Q psy503 207 A-------KSIGLVNTLTPQ 219 (333)
Q Consensus 207 A-------l~~Glv~~vv~~ 219 (333)
. ...|++|.++++
T Consensus 186 lgG~~~h~~~sG~~d~v~~d 205 (493)
T PF01039_consen 186 LGGADVHAAKSGVVDYVVDD 205 (493)
T ss_dssp HHBHHHHHHTSSSSSEEESS
T ss_pred hhhhhhhcccCCCceEEEec
Confidence 4 468999999996
No 140
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.23 E-value=0.0058 Score=53.92 Aligned_cols=97 Identities=19% Similarity=0.207 Sum_probs=64.8
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEE--EEeCCeEEeccccccCccCChhh-hhh---------------c
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR--VAASNVRMGLVETKLAIIPGAGG-TQR---------------L 183 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~r--ias~~a~f~~pe~~~Gl~p~~g~-~~~---------------L 183 (333)
.++..+...+.||...+-|.|...|..|++++|.. ++.+++++-+-... |.+-+... ... +
T Consensus 76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~ 154 (200)
T COG0740 76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIY 154 (200)
T ss_pred HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677899999999999999999999999885 88888777654444 22111110 000 0
Q ss_pred ccccC--HHHHHHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 184 PRIVG--IPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 184 ~r~iG--~~~a~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
...-| ..+-...+-....++|+||+++||||+|...
T Consensus 155 a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~ 192 (200)
T COG0740 155 AEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIES 192 (200)
T ss_pred HHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccc
Confidence 00111 2233344445667899999999999999986
No 141
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.11 E-value=0.017 Score=58.63 Aligned_cols=152 Identities=14% Similarity=0.188 Sum_probs=90.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|+++-.+..=+.-++.....+.+.++++.+.+.. +-+|.|.-. ++ ..+.+-.. ....+.+.+... . .
T Consensus 84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dS-gG-----arm~eg~~----~l~~~~~~~~~~-~-~ 150 (512)
T TIGR01117 84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDS-GG-----ARIQEAVD----ALKGYGDIFYRN-T-I 150 (512)
T ss_pred EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecC-CC-----CCccccch----hhhhHHHHHHHH-H-H
Confidence 4444444444678888888999999999887664 445555444 22 22322100 001111111111 1 1
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCe-EEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHH
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV-RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTE 206 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a-~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~e 206 (333)
..-..|.|++|-|+|.||+.....+||++|+++++ .+++. +...+.. .+|+.++++|
T Consensus 151 ~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~a-----------GP~vv~~-----------~~Ge~v~~e~ 208 (512)
T TIGR01117 151 ASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFIT-----------GPQVIKT-----------VTGEEVTAEQ 208 (512)
T ss_pred HcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEec-----------ChHHHHh-----------hcCcccchhh
Confidence 23358999999999999998888899999999864 44421 1111111 3345555554
Q ss_pred H-------HHcCCcceecCCCCChhHHHHHHHHHHHHH
Q psy503 207 A-------KSIGLVNTLTPQNPNQNAAYLASLRIAEDI 237 (333)
Q Consensus 207 A-------l~~Glv~~vv~~~~~~~~l~~~a~~~a~~i 237 (333)
. ..-|.+|.++++ ++++.+.+.++..-+
T Consensus 209 lGGa~~h~~~sGv~d~~~~d---e~ea~~~~r~~ls~l 243 (512)
T TIGR01117 209 LGGAMAHNSVSGVAHFIAED---DDDCIMLIRRLLSFL 243 (512)
T ss_pred cchHHHhccccceeEEecCC---hHHHHHHHHHHHHhC
Confidence 4 258999999997 466666666665544
No 142
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.10 E-value=0.0078 Score=55.63 Aligned_cols=135 Identities=13% Similarity=0.192 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhh
Q psy503 63 NATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSA 142 (333)
Q Consensus 63 t~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a 142 (333)
.++-++.-.+.++.+++=. .-+|-+--+ .++|. |..-.+ +...+.+.+-+..+..++.|+||.|=|--
T Consensus 132 ~PeGyRKAlRlm~~AekF~-lPiitfIDT-~GAyp-G~~AEE---------rGQ~eAIA~nL~em~~LkvPiI~iVIGEG 199 (317)
T COG0825 132 RPEGYRKALRLMKLAEKFG-LPIITFIDT-PGAYP-GIGAEE---------RGQSEAIARNLREMARLKVPIISIVIGEG 199 (317)
T ss_pred CchHHHHHHHHHHHHHHhC-CCEEEEecC-CCCCC-Ccchhh---------cccHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 3777887777777776532 334444444 33343 222222 12224455566677899999999998888
Q ss_pred hHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 143 YGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 143 ~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
-+||+.-...+|.+.+-++++|+. +.|.+.++.+|..- .++.+. .....++|++.+++||||.|+|.
T Consensus 200 gSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~---~ka~eA-Ae~mkita~dLk~lgiID~II~E 266 (317)
T COG0825 200 GSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDA---SKAKEA-AEAMKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred CchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcCh---hhhHHH-HHHcCCCHHHHHhCCCcceeccC
Confidence 777776666789999999999882 45666666555542 233332 23458999999999999999985
No 143
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.96 E-value=0.05 Score=55.76 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=90.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
|+++--+..-+..+++....+.+.++++.+.+.. +-+|.|.-. ++++-.+ +...+. ....+.+.+. ...++
T Consensus 131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DS-gGarl~~-q~e~~~-----~~~~~g~if~-~~~~l 201 (569)
T PLN02820 131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDS-GGANLPR-QAEVFP-----DRDHFGRIFY-NQARM 201 (569)
T ss_pred EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeC-CCcCCcc-cccccc-----hHhHHHHHHH-HHHHH
Confidence 3444444333678899999999999999887654 456666554 3333211 000000 0001111111 22234
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCC-eEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHH
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTE 206 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~-a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~e 206 (333)
....+|.|++|-|+|.|||..+..+||++|+++. +.+.+ -|+...+ ..+|+.++++|
T Consensus 202 s~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~--------------------aGP~vV~--~~~Ge~v~~ee 259 (569)
T PLN02820 202 SSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL--------------------AGPPLVK--AATGEEVSAED 259 (569)
T ss_pred hCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe--------------------cCHHHHH--hhcCcccCHHH
Confidence 4567999999999999999999999999999874 54442 1111111 13456666655
Q ss_pred HH-------HcCCcceecCCCCChhHHHHHHHHHHHH
Q psy503 207 AK-------SIGLVNTLTPQNPNQNAAYLASLRIAED 236 (333)
Q Consensus 207 Al-------~~Glv~~vv~~~~~~~~l~~~a~~~a~~ 236 (333)
.- .-|.+|.++++ ..+.++.+.++..-
T Consensus 260 LGGa~~h~~~sGv~d~~~~d---e~~a~~~~R~lls~ 293 (569)
T PLN02820 260 LGGADVHCKVSGVSDHFAQD---ELHALAIGRNIVKN 293 (569)
T ss_pred hCCHHHhcccccccccccCc---hHHHHHHHHHHHHh
Confidence 42 47999999987 34444444444433
No 144
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=96.50 E-value=0.0094 Score=58.53 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=56.8
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHhcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHH
Q psy503 230 SLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRV 309 (333)
Q Consensus 230 a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~ 309 (333)
+.+..+.+.+.+|.++..+-+.++ ++... ++.+.+..|+....++
T Consensus 294 a~~~~~~l~~~sP~Sl~vt~~~~~---~~~~~--------------------------------~l~e~~~~e~~~~~~~ 338 (401)
T PLN02157 294 CITTLRRLKESSPLSLKVALRSIR---EGRLQ--------------------------------TLDQCLIREYRMSLQG 338 (401)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHH---HhhcC--------------------------------CHHHHHHHHHHHHHHH
Confidence 334555677899999999999999 77665 8999999999999988
Q ss_pred hc---CccHHHHHHHHhc--cCCCCCCC
Q psy503 310 IR---TQDRVEGLKSFLG--KYKPVYKG 332 (333)
Q Consensus 310 ~~---~~d~~egi~afle--kr~p~~~~ 332 (333)
+. ++||.|||+|.|- .++|+|+.
T Consensus 339 ~~~~~~~DF~EGVRA~LiDKd~~P~W~p 366 (401)
T PLN02157 339 LIGPMSGNFCEGVRARLIDKDEAPKWDP 366 (401)
T ss_pred HhcCCCchHHHHHHHHHcCCCCCCCCCC
Confidence 85 6999999999976 36899973
No 145
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=95.34 E-value=0.1 Score=52.78 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=94.1
Q ss_pred CCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHH
Q psy503 45 RPGIVELCMNRPQA-RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (333)
Q Consensus 45 ~~~v~~Itln~p~~-~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l 123 (333)
++.-.-|--|+|.. .-+++++-.....+.+...+. -++-+|.|.-. ++ |..|.+ .+....++...++
T Consensus 292 ~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pG-f~~g~~---------~E~~g~~~~ga~~ 359 (493)
T PF01039_consen 292 GGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PG-FMPGPE---------AERAGIIRAGARL 359 (493)
T ss_dssp TTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CE-B--SHH---------HHHTTHHHHHHHH
T ss_pred CCcceEEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-cc-ccccch---------hhhcchHHHHHHH
Confidence 34433344455542 226999999999999998887 45677777766 43 555532 2233456777889
Q ss_pred HHHHhcCCCcEEEEechhhhHhhHHHHHhC----CEEEEeCCeEEeccccccCccCChhhhhhcccc-c------C--HH
Q psy503 124 TCQLESIPVPVLAVLDGSAYGGGLEMALAC----DIRVAASNVRMGLVETKLAIIPGAGGTQRLPRI-V------G--IP 190 (333)
Q Consensus 124 ~~~l~~~~kP~Iaav~G~a~GgG~~Lal~c----D~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~-i------G--~~ 190 (333)
+..+..+..|+|..|-|.++|||....... |+++|.+++.++ ..++.++...+-+. + + ..
T Consensus 360 ~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~~~ 432 (493)
T PF01039_consen 360 LYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGADPE 432 (493)
T ss_dssp HHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHSHH
T ss_pred HHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccchhH
Confidence 999999999999999999999887555555 788887777766 44444443332221 1 1 00
Q ss_pred --HHHHHHH-cCCCCCHHHHHHcCCcceecCC
Q psy503 191 --LAKELIY-TGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 191 --~a~~lll-tG~~isa~eAl~~Glv~~vv~~ 219 (333)
....+-. .-+..++..+...|++|.|+++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p 464 (493)
T PF01039_consen 433 AQRAEKIAEYEDELSSPYRAASRGYVDDIIDP 464 (493)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHTTSSSEESSG
T ss_pred HHHHHHHHHHHHhcCCHHHHHhcCCCCCccCH
Confidence 0111111 1122588999999999999997
No 146
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=95.20 E-value=0.68 Score=47.58 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=93.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Q psy503 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (333)
Q Consensus 60 Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~ 139 (333)
-+++.+-.....+.++..+. -++-+|-|.-. ++ |..|.+-+ .....+...+++..+.....|.|+.|-
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~-pG-f~~G~~~E---------~~G~~~~~a~l~~A~a~~~VP~isvi~ 447 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNI-TG-FMVGSRSE---------ASGIAKAGAKMVMAVACAKVPKITIIV 447 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEEC-CC-CCCCHHHH---------HhhHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 45888899999999888875 46777777766 44 66554332 234567778889999999999999999
Q ss_pred hhhhHhhHHHHH----hCCEEEEeCCeEEeccccccCccCChhhhhhcccc-c------------CHHHHH-HH--HHcC
Q psy503 140 GSAYGGGLEMAL----ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRI-V------------GIPLAK-EL--IYTG 199 (333)
Q Consensus 140 G~a~GgG~~Lal----~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~-i------------G~~~a~-~l--lltG 199 (333)
|.++|+|..-.+ ..|++++.+++. +|..++.++...+.+. + -...+. +. -..-
T Consensus 448 g~a~G~g~~aM~g~~~~~d~~~awp~A~-------i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (569)
T PLN02820 448 GGSFGAGNYGMCGRAYSPNFLFMWPNAR-------IGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYE 520 (569)
T ss_pred CCcchHHHHHhcCcCCCCCEEEECCCCe-------EEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHH
Confidence 999998765554 456666666655 4555555555444321 1 111111 11 1122
Q ss_pred CCCCHHHHHHcCCcceecCC
Q psy503 200 RLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 200 ~~isa~eAl~~Glv~~vv~~ 219 (333)
+..++-.|-..|+||.|++|
T Consensus 521 ~~~~p~~aa~~~~vD~VIdP 540 (569)
T PLN02820 521 REANPYYSTARLWDDGVIDP 540 (569)
T ss_pred HhCCHHHHHHcCCcCcccCH
Confidence 34577788899999999997
No 147
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=95.06 E-value=0.47 Score=43.81 Aligned_cols=158 Identities=16% Similarity=0.210 Sum_probs=101.8
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHH--HHHHHHHH
Q psy503 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSF--VSTLRYMT 124 (333)
Q Consensus 47 ~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~--~~~~~~l~ 124 (333)
.+++..++..=-..++..-.=..+.++++.+-.+. +.+|+++.+ |+ .-+++ ....+ +......+
T Consensus 123 pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k-~P~v~f~aS-GG-----ARMQE-------g~lSLMQMaktsaAl 188 (294)
T COG0777 123 PVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDK-LPLVLFSAS-GG-----ARMQE-------GILSLMQMAKTSAAL 188 (294)
T ss_pred EEEEEEEeccccccchhHHHHHHHHHHHHHHHHhC-CCEEEEecC-cc-----hhHhH-------HHHHHHHHHHHHHHH
Confidence 35555555544457777777788999998887654 678888887 33 22222 11111 23445567
Q ss_pred HHHhcCCCcEEEEechhhhHhh-HHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCC
Q psy503 125 CQLESIPVPVLAVLDGSAYGGG-LEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD 203 (333)
Q Consensus 125 ~~l~~~~kP~Iaav~G~a~GgG-~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~is 203 (333)
.++.....|.|+.+..+..||= +.+++.-|+.||.+.|.+||...++ --+.....++. .--+
T Consensus 189 ~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV-------IEQTire~LPe----------gfQ~ 251 (294)
T COG0777 189 KRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV-------IEQTIREKLPE----------GFQT 251 (294)
T ss_pred HHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchh-------hhhhhcccCCc----------chhh
Confidence 7778889999999999999886 4799999999999888877654331 11222222221 1225
Q ss_pred HHHHHHcCCcceecCCCCChhHHHHHHHHHHHHHhh
Q psy503 204 STEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAH 239 (333)
Q Consensus 204 a~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~ia~ 239 (333)
++-.++.|+||.||+. .++-.....+.+.+..
T Consensus 252 aEfLlehG~iD~iv~R----~elr~tla~ll~~~~~ 283 (294)
T COG0777 252 AEFLLEHGMIDMIVHR----DELRTTLASLLAKLTP 283 (294)
T ss_pred HHHHHHcCCceeeecH----HHHHHHHHHHHHHhCC
Confidence 6667789999999995 5565555455444443
No 148
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=94.09 E-value=0.23 Score=50.10 Aligned_cols=102 Identities=16% Similarity=0.200 Sum_probs=63.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l 127 (333)
+.+.--+.+-+.-++.+-..+.+.++.+.+.++....+.+..+. |..+.+-.. ..+.+-+.++ ...++
T Consensus 93 ~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsg-------Gari~~~v~----~l~g~g~iF~-~~a~~ 160 (526)
T COG4799 93 VFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSG-------GARIQEGVP----SLAGYGRIFY-RNARA 160 (526)
T ss_pred EEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEccc-------ccccccCcc----ccccchHHHH-HHHHh
Confidence 44444445557778887778888888888776544344444443 333322110 0111111122 22233
Q ss_pred hcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCe
Q psy503 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162 (333)
Q Consensus 128 ~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a 162 (333)
... +|.|++|-|+|.|||.-+-..||++|+.++.
T Consensus 161 Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~ 194 (526)
T COG4799 161 SGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ 194 (526)
T ss_pred ccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence 334 9999999999999999999999999999884
No 149
>KOG0840|consensus
Probab=93.22 E-value=0.87 Score=41.61 Aligned_cols=132 Identities=16% Similarity=0.240 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEech
Q psy503 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLV-KDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDG 140 (333)
Q Consensus 62 lt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G 140 (333)
+++++-..+...|-.++.+++-|=+.+.=.. |+.-.+| ..++..+..++-||-...=|
T Consensus 101 Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtag---------------------lAIYDtMq~ik~~V~Tic~G 159 (275)
T KOG0840|consen 101 IDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAG---------------------LAIYDTMQYIKPDVSTICVG 159 (275)
T ss_pred CcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchh---------------------hhHHHHHHhhCCCceeeehh
Confidence 7788888888888888766655655443321 2222222 12223333444444444457
Q ss_pred hhhHhhHHHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcc--------ccc--------------C--HHHHHHHH
Q psy503 141 SAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLP--------RIV--------------G--IPLAKELI 196 (333)
Q Consensus 141 ~a~GgG~~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~--------r~i--------------G--~~~a~~ll 196 (333)
.|.+-|..|..+ .+..-+|++|..++=|.-+.|++.--. .++ | .....+-+
T Consensus 160 ~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~ 234 (275)
T KOG0840|consen 160 LAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDM 234 (275)
T ss_pred hHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhh
Confidence 777666554443 345567777777766644443321100 000 0 11111222
Q ss_pred HcCCCCCHHHHHHcCCcceecCC
Q psy503 197 YTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 197 ltG~~isa~eAl~~Glv~~vv~~ 219 (333)
-.-+.++|+||+++||||.|+..
T Consensus 235 dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 235 DRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred cccccCCHHHHHHhcchhhhhcC
Confidence 23345699999999999999873
No 150
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=90.52 E-value=1.5 Score=44.35 Aligned_cols=152 Identities=16% Similarity=0.235 Sum_probs=96.4
Q ss_pred EEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHH
Q psy503 48 IVELCMNRP-QARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ 126 (333)
Q Consensus 48 v~~Itln~p-~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~ 126 (333)
|++|- |+| ...-+|+.+....-.+.+ ++....++-.|.|.-. ++ |..|.|-. ....++....++.+
T Consensus 326 VGiIA-Nqp~~~~G~l~~~sa~KaArFI-~~cd~~~iPlv~L~d~-pG-Fm~G~~~E---------~~giik~Gakl~~A 392 (526)
T COG4799 326 VGIIA-NQPRHLGGVLDIDSADKAARFI-RLCDAFNIPLVFLVDT-PG-FMPGTDQE---------YGGIIKHGAKLLYA 392 (526)
T ss_pred EEEEe-cCccccccccchHHHHHHHHHH-HhhhccCCCeEEEeCC-CC-CCCChhHH---------hChHHHhhhHHHhh
Confidence 44444 444 356789999999999888 4555567778888776 44 88886543 33566777889999
Q ss_pred HhcCCCcEEEEechhhhHhhHHHH----HhCCEEEEeCCeEEeccccccCccCChhhhhhccc-ccC----HHHH-----
Q psy503 127 LESIPVPVLAVLDGSAYGGGLEMA----LACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPR-IVG----IPLA----- 192 (333)
Q Consensus 127 l~~~~kP~Iaav~G~a~GgG~~La----l~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r-~iG----~~~a----- 192 (333)
+....+|.|..|-|.++|||.... +.+|+.+|.+++.+ +..-+.|+...+-+ .+. +..-
T Consensus 393 ~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~i-------aVMG~egAv~i~~~k~l~~~~~~~~~~~~~~ 465 (526)
T COG4799 393 VAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEI-------AVMGPEGAVSILYRKELAAAERPEEREALLR 465 (526)
T ss_pred HhhccCCeEEEEecccccceeeeecCccCCCceeEecCccee-------eecCHHHHHHHHHHHHhhcccCchhHHHHHH
Confidence 999999999999999999986433 33555555555554 44333444333332 221 0000
Q ss_pred --HHHHHcCCCCCHHHHHHcCCcceecCC
Q psy503 193 --KELIYTGRLVDSTEAKSIGLVNTLTPQ 219 (333)
Q Consensus 193 --~~llltG~~isa~eAl~~Glv~~vv~~ 219 (333)
...-+.-+-.++--|.+.|++|.|+++
T Consensus 466 ~~~~~eY~~~~~~p~~aa~r~~iD~vI~p 494 (526)
T COG4799 466 KQLIAEYEEQFSNPYYAAERGYIDAVIDP 494 (526)
T ss_pred HHHHHHHHHhccchHHHHHhCCCCcccCH
Confidence 111111222455567778999999997
No 151
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=76.77 E-value=6.7 Score=37.13 Aligned_cols=79 Identities=11% Similarity=0.240 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhcCC---CceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechh
Q psy503 65 TLVEEILTAVEAIRGDE---EVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS 141 (333)
Q Consensus 65 ~~~~eL~~~l~~~~~d~---~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~ 141 (333)
....++.++|+.++... .+.+|||.=. |+. +.++...+. ..+.+.|..++.|||++| ||
T Consensus 55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RG-GGs------~eDL~~FN~----------e~varai~~~~~PvisaI-GH 116 (319)
T PF02601_consen 55 GAAASIVSALRKANEMGQADDFDVIIIIRG-GGS------IEDLWAFND----------EEVARAIAASPIPVISAI-GH 116 (319)
T ss_pred chHHHHHHHHHHHHhccccccccEEEEecC-CCC------hHHhcccCh----------HHHHHHHHhCCCCEEEec-CC
Confidence 45678888888887654 5667776554 331 222222221 357888999999999987 33
Q ss_pred hhHhhHHHHHhCCEEEEeCCe
Q psy503 142 AYGGGLEMALACDIRVAASNV 162 (333)
Q Consensus 142 a~GgG~~Lal~cD~rias~~a 162 (333)
-.-- ...=+.+|+|..|+++
T Consensus 117 e~D~-ti~D~vAd~ra~TPta 136 (319)
T PF02601_consen 117 ETDF-TIADFVADLRAPTPTA 136 (319)
T ss_pred CCCc-hHHHHHHHhhCCCHHH
Confidence 2211 2344667888887754
No 152
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=73.75 E-value=11 Score=35.29 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=49.3
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHH-----------------------HHHHHHhcCCCceEEEEEeCCCCccccCCC
Q psy503 45 RPGIVELCMNRPQARNALNATLVEEIL-----------------------TAVEAIRGDEEVRCVLLRSLVKDVFCAGAD 101 (333)
Q Consensus 45 ~~~v~~Itln~p~~~Nalt~~~~~eL~-----------------------~~l~~~~~d~~v~vvVl~g~~g~~F~~G~D 101 (333)
.++|++|- +.-.+|.|+..+|. ++|+.+++||+.++||+-|.-|+
T Consensus 145 ~G~IGiVS-----rSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG------- 212 (293)
T COG0074 145 PGNIGIVS-----RSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGG------- 212 (293)
T ss_pred CCceEEEe-----cCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCCC-------
Confidence 55666653 34567888877776 67889999999999999998332
Q ss_pred chhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhh
Q psy503 102 LKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAY 143 (333)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~ 143 (333)
...+.+.++ ... ...+||+|+.+-|.+.
T Consensus 213 ------~aEe~AA~~-------i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 213 ------PAEEEAAEY-------IKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred ------cHHHHHHHH-------HHH-hccCCCEEEEEeccCC
Confidence 112222233 223 2344999999999865
No 153
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=72.91 E-value=8.4 Score=38.33 Aligned_cols=80 Identities=14% Similarity=0.200 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhh
Q psy503 64 ATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAY 143 (333)
Q Consensus 64 ~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~ 143 (333)
.+...++..+|+.++..+++.+|||.=. |+.+. ||..| +. ..+.+.+..++.|||++| ||-.
T Consensus 169 ~~a~~~i~~al~~~~~~~~~dviii~RG-GGs~e---DL~~F---n~----------e~~~rai~~~~~Pvis~i-GHe~ 230 (432)
T TIGR00237 169 EGAVQSIVESIELANTKNECDVLIVGRG-GGSLE---DLWSF---ND----------EKVARAIFLSKIPIISAV-GHET 230 (432)
T ss_pred ccHHHHHHHHHHHhhcCCCCCEEEEecC-CCCHH---Hhhhc---Cc----------HHHHHHHHcCCCCEEEec-CcCC
Confidence 4557788888888887666777776554 43221 22222 11 357888999999999987 2221
Q ss_pred HhhHHHHHhCCEEEEeCCe
Q psy503 144 GGGLEMALACDIRVAASNV 162 (333)
Q Consensus 144 GgG~~Lal~cD~rias~~a 162 (333)
-- ...=+.+|.|..|+++
T Consensus 231 D~-ti~D~vAd~ra~TPta 248 (432)
T TIGR00237 231 DF-TISDFVADLRAPTPSA 248 (432)
T ss_pred Cc-cHHHHhhhccCCCcHH
Confidence 10 2244668888887754
No 154
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=71.36 E-value=12 Score=35.65 Aligned_cols=53 Identities=15% Similarity=0.340 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhh
Q psy503 70 ILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAY 143 (333)
Q Consensus 70 L~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~ 143 (333)
+.+.|+.+++||+.++|++.+..++ ...++..++++. ....||+|+.+-|...
T Consensus 212 ~~D~L~~~~~Dp~T~~Ivl~~E~gG-------------~~e~~aa~fi~~--------~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 212 FIDCLKLFLNDPETEGIILIGEIGG-------------TAEEEAAEWIKN--------NPIKKPVVSFIAGITA 264 (317)
T ss_pred HHHHHHHHhhCCCccEEEEEEecCC-------------chhHHHHHHHHh--------hcCCCcEEEEEecCCC
Confidence 5577888888999999999998332 111223333322 2468999999988753
No 155
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=69.20 E-value=11 Score=37.52 Aligned_cols=77 Identities=16% Similarity=0.333 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhH
Q psy503 65 TLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYG 144 (333)
Q Consensus 65 ~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~G 144 (333)
..-.++.++++.++...++.++|+.-. |+ -+.++...+. ..+.+.+..+++|+|++| ||-.-
T Consensus 176 ~A~~eIv~aI~~an~~~~~DvlIVaRG-GG------SiEDLW~FNd----------E~vaRAi~~s~iPvISAV-GHEtD 237 (440)
T COG1570 176 GAAEEIVEAIERANQRGDVDVLIVARG-GG------SIEDLWAFND----------EIVARAIAASRIPVISAV-GHETD 237 (440)
T ss_pred CcHHHHHHHHHHhhccCCCCEEEEecC-cc------hHHHHhccCh----------HHHHHHHHhCCCCeEeec-ccCCC
Confidence 346677888888887777777776443 32 2223222222 247788999999999987 22211
Q ss_pred hhHH-HHHhCCEEEEeCC
Q psy503 145 GGLE-MALACDIRVAASN 161 (333)
Q Consensus 145 gG~~-Lal~cD~rias~~ 161 (333)
+. .=+.+|+|-.|++
T Consensus 238 --~tL~DfVAD~RApTPT 253 (440)
T COG1570 238 --FTLADFVADLRAPTPT 253 (440)
T ss_pred --ccHHHhhhhccCCCch
Confidence 11 2244677766664
No 156
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=68.78 E-value=18 Score=30.05 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhh
Q psy503 69 EILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSA 142 (333)
Q Consensus 69 eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a 142 (333)
.+.+.++.+.+||++++|++.-++-+ .. +.+.+..++.... ||+|+..-|..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~~-----------------d~----~~f~~~~~~a~~~-KPVv~lk~Grt 92 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGIG-----------------DG----RRFLEAARRAARR-KPVVVLKAGRT 92 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES--S------------------H----HHHHHHHHHHCCC-S-EEEEE----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCCC-----------------CH----HHHHHHHHHHhcC-CCEEEEeCCCc
Confidence 47788889999999999999998321 11 3445566666666 99999998874
No 157
>smart00250 PLEC Plectin repeat.
Probab=63.89 E-value=5.8 Score=25.11 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=16.9
Q ss_pred cCCCCCHHHHHHcCCcce
Q psy503 198 TGRLVDSTEAKSIGLVNT 215 (333)
Q Consensus 198 tG~~isa~eAl~~Glv~~ 215 (333)
+|+++|-.||++.||+|.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 899999999999999985
No 158
>PLN02522 ATP citrate (pro-S)-lyase
Probab=60.48 E-value=22 Score=36.96 Aligned_cols=53 Identities=13% Similarity=0.096 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCCceEEEEEeC-CCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhh
Q psy503 69 EILTAVEAIRGDEEVRCVLLRSL-VKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAY 143 (333)
Q Consensus 69 eL~~~l~~~~~d~~v~vvVl~g~-~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~ 143 (333)
.+.+.|+.+++||+.++|++.+. |++ ..+++ .+..++.. ..||||+.+-|.+-
T Consensus 209 ~~~D~L~~~~~Dp~Tk~IvlygEiGg~-----------------~e~~f----~ea~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 209 TLSDHVLRFNNIPQIKMIVVLGELGGR-----------------DEYSL----VEALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred CHHHHHHHHhcCCCCCEEEEEEecCch-----------------hHHHH----HHHHHHhc-CCCCEEEEeccCCC
Confidence 35777888899999999999998 433 11122 22333332 68999999988876
No 159
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=59.34 E-value=21 Score=35.45 Aligned_cols=79 Identities=14% Similarity=0.195 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhh
Q psy503 64 ATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAY 143 (333)
Q Consensus 64 ~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~ 143 (333)
.....++..+|+.++... +.+|||.=. |+.+. ||..| +. ..+.+++..++.|||++| ||-.
T Consensus 175 ~~A~~~i~~al~~~~~~~-~Dviii~RG-GGS~e---DL~~F---n~----------e~v~~ai~~~~~Pvis~I-GHE~ 235 (438)
T PRK00286 175 EGAAASIVAAIERANARG-EDVLIVARG-GGSLE---DLWAF---ND----------EAVARAIAASRIPVISAV-GHET 235 (438)
T ss_pred ccHHHHHHHHHHHhcCCC-CCEEEEecC-CCCHH---Hhhcc---Cc----------HHHHHHHHcCCCCEEEec-cCCC
Confidence 345778888888887643 556665443 33221 23222 11 357888999999999977 2221
Q ss_pred HhhHHHHHhCCEEEEeCCe
Q psy503 144 GGGLEMALACDIRVAASNV 162 (333)
Q Consensus 144 GgG~~Lal~cD~rias~~a 162 (333)
-- ...=+.+|.|..|+++
T Consensus 236 D~-tl~D~vAd~ra~TPta 253 (438)
T PRK00286 236 DF-TIADFVADLRAPTPTA 253 (438)
T ss_pred Cc-cHHHHhhhccCCChHH
Confidence 10 2345668888888764
No 160
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=56.74 E-value=1.4e+02 Score=27.98 Aligned_cols=121 Identities=14% Similarity=0.097 Sum_probs=68.5
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHH-HH--------HHH
Q psy503 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ-IR--------SFV 117 (333)
Q Consensus 47 ~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~-~~--------~~~ 117 (333)
+-=++.+|.. .|-+|.+.+....+++.+.-..+.-++-||-|...+.|.---|-.........+ .. .+.
T Consensus 128 ~~Nilpi~Gs--~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfS 205 (329)
T COG3660 128 GPNILPINGS--PHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFS 205 (329)
T ss_pred CCceeeccCC--CCcccHHHhhhhHHHHHhhCCCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEee
Confidence 4456777765 488999999999999998865566677777777677675322221110000000 00 000
Q ss_pred HHHHHHHHHHhc--CCCcEEEEechh--hhHhhHHHHHhCCEEEEeCCeEEecccc
Q psy503 118 STLRYMTCQLES--IPVPVLAVLDGS--AYGGGLEMALACDIRVAASNVRMGLVET 169 (333)
Q Consensus 118 ~~~~~l~~~l~~--~~kP~Iaav~G~--a~GgG~~Lal~cD~rias~~a~f~~pe~ 169 (333)
++.-+....+.+ .+--++..-|+- -..--+.+...+|++|++.|+.=...|+
T Consensus 206 RRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSinM~sEA 261 (329)
T COG3660 206 RRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSINMCSEA 261 (329)
T ss_pred cCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchhhhhHHH
Confidence 111111222221 333445566666 3334567888999999998876555554
No 161
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=50.46 E-value=5.2 Score=26.42 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=16.1
Q ss_pred cCCCCCHHHHHHcCCccee
Q psy503 198 TGRLVDSTEAKSIGLVNTL 216 (333)
Q Consensus 198 tG~~isa~eAl~~Glv~~v 216 (333)
+|++++-++|++.||||.-
T Consensus 18 tg~~lsv~~A~~~glId~~ 36 (45)
T PF00681_consen 18 TGERLSVEEAIQRGLIDSD 36 (45)
T ss_dssp TTEEEEHHHHHHTTSS-HH
T ss_pred CCeEEcHHHHHHCCCcCHH
Confidence 7899999999999999853
No 162
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=49.79 E-value=43 Score=28.41 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhH
Q psy503 69 EILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYG 144 (333)
Q Consensus 69 eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~G 144 (333)
...++|..+.+||++++|++-+.+|-.-| .+.+..++..+..... ....+|+|+.|-|-..-
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~------------~~~A~~l~~a~~~~~~--~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVGGIGSC------------EDPAAGLIPAIKEAKA--EGRKKPVVARVCGTNAD 121 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEESSSSSH------------HHHHHHHHHHHSHCTH--TTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHHhcCCCccEEEEEeccccCch------------HHHHHHHHHHHHhccc--cCCCCcEEEEeeeecCC
Confidence 45667778888999999999998442111 1122222222221111 35789999999887654
No 163
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=43.13 E-value=47 Score=29.90 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=41.8
Q ss_pred EEEeeecCCCEEEEEEcCCCC-------CCCCCHHHHHH---HHHHHHHHhcCCCceEEEEEeCCCCccccC
Q psy503 38 IYHNSPERPGIVELCMNRPQA-------RNALNATLVEE---ILTAVEAIRGDEEVRCVLLRSLVKDVFCAG 99 (333)
Q Consensus 38 ~~~~~~~~~~v~~Itln~p~~-------~Nalt~~~~~e---L~~~l~~~~~d~~v~vvVl~g~~g~~F~~G 99 (333)
.|.+-+++..|+++||..... .-++.-....| +...+..+-.+|++|.+||+|..-+..-+|
T Consensus 17 dY~vGd~~SpVAV~Tl~S~~~~~~~~~agaAi~G~~~TENlGIEKvI~NvisNpNIRflilcG~Ev~GH~tG 88 (225)
T PRK00964 17 DYVVGDPESPVAVVTLGSHLLDQPIIDAGAAISGPCHTENLGIEKVIANVISNPNIRFLILCGSEVQGHITG 88 (225)
T ss_pred eeEeCCCCCceEEEEccccccccchhhcCceeecccccccccHHHHHHHHhcCCCceEEEEecCccCCcccc
Confidence 456677789999999998642 12233333333 666777777899999999999843434444
No 164
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=42.20 E-value=15 Score=36.36 Aligned_cols=98 Identities=10% Similarity=0.107 Sum_probs=57.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCccccCCCchhhcccCHH----HHHHHHHHHH
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL--RSLVKDVFCAGADLKHRLTLNED----QIRSFVSTLR 121 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl--~g~~g~~F~~G~Dl~~~~~~~~~----~~~~~~~~~~ 121 (333)
|+.|+|.. |+.....+|..+++.++++. ++++|| ++..|+..+...++..+.-.... .-+.-....+
T Consensus 205 IGyI~I~~------F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~ 277 (406)
T COG0793 205 IGYIRIPS------FGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVY 277 (406)
T ss_pred EEEEEecc------cccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeec
Confidence 88888764 55666777999999998876 788887 55556666666655443211000 0000000000
Q ss_pred HHHHHHhcCCCcEEEEechhhhHhhHHHHHh
Q psy503 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALA 152 (333)
Q Consensus 122 ~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~ 152 (333)
.....-...++|+|..||+.+..++=.++.+
T Consensus 278 ~~~~~~~~~~~PlvvLvn~~SASAsEI~aga 308 (406)
T COG0793 278 FSASGEALYDGPLVVLVNEGSASASEIFAGA 308 (406)
T ss_pred cccccccCCCCCEEEEECCCCccHHHHHHHH
Confidence 0000000457999999999988777555554
No 165
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=41.69 E-value=39 Score=33.72 Aligned_cols=84 Identities=13% Similarity=0.133 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhH
Q psy503 68 EEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGL 147 (333)
Q Consensus 68 ~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~ 147 (333)
-.+.+.|+.+..||++++|++..++-+ +. +.|....++... .||+|+..-|..- .|.
T Consensus 189 ~~~~d~l~~l~~D~~t~~I~ly~E~~~-----------------~~----~~f~~aa~~a~~-~KPVv~~k~Grs~-~g~ 245 (447)
T TIGR02717 189 IDESDLLEYLADDPDTKVILLYLEGIK-----------------DG----RKFLKTAREISK-KKPIVVLKSGTSE-AGA 245 (447)
T ss_pred CCHHHHHHHHhhCCCCCEEEEEecCCC-----------------CH----HHHHHHHHHHcC-CCCEEEEecCCCh-hhh
Confidence 467788889999999999999987211 11 223444455544 8999999998874 345
Q ss_pred HHHHhCCEEEEeCCeEEeccccccCcc
Q psy503 148 EMALACDIRVAASNVRMGLVETKLAII 174 (333)
Q Consensus 148 ~Lal~cD~rias~~a~f~~pe~~~Gl~ 174 (333)
..+.++---++.++..|.--.-+.|++
T Consensus 246 ~aa~sHtgalag~~~~~~a~~~~~Gv~ 272 (447)
T TIGR02717 246 KAASSHTGALAGSDEAYDAAFKQAGVI 272 (447)
T ss_pred hhhhhccccccChHHHHHHHHHHCCeE
Confidence 555554444555554444444455553
No 166
>TIGR01111 mtrA N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A. coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.
Probab=41.58 E-value=78 Score=28.59 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=43.1
Q ss_pred EEEeeecCCCEEEEEEcCCCCC-------CCCCHHHHHH---HHHHHHHHhcCCCceEEEEEeCCCCccccCCCc
Q psy503 38 IYHNSPERPGIVELCMNRPQAR-------NALNATLVEE---ILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102 (333)
Q Consensus 38 ~~~~~~~~~~v~~Itln~p~~~-------Nalt~~~~~e---L~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl 102 (333)
.|.+-+++..|+++||...... -++.-....| +...+..+-.||++|.+|++|..-+..-+|--|
T Consensus 17 dY~vGd~~SpVAV~TL~Sh~~~~~i~~agaAI~G~~~TENlGIEKvIaNvisNpNIRflilcG~Ev~GHltGqsL 91 (238)
T TIGR01111 17 EYVVGDPESPVLVVTLGSHIEEQIILDAGAAIAGPCKTENLGIEKVVANIISNPNIRFLILCGSEVQGHITGQSF 91 (238)
T ss_pred eeEecCCCCceEEEEccccccccchhhcCceeeccccccccCHHHHHHHHhcCCCceEEEEecCcccCccccHHH
Confidence 4666777889999999976421 2222222222 566777777899999999999854445555433
No 167
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=40.58 E-value=72 Score=30.19 Aligned_cols=53 Identities=17% Similarity=0.338 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhh
Q psy503 69 EILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSA 142 (333)
Q Consensus 69 eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a 142 (333)
.+.+.|+.+..||+.++|++..+++ |.+++ +.++|++ ... ..||+|+..-|..
T Consensus 192 ~~~d~L~yl~~Dp~T~~I~ly~E~~-----G~~~~--------d~~~f~~-------aa~-~~KPVV~lk~Grs 244 (300)
T PLN00125 192 NFVDCLEKFVKDPQTEGIILIGEIG-----GTAEE--------DAAAFIK-------ESG-TEKPVVAFIAGLT 244 (300)
T ss_pred CHHHHHHHHhhCCCCcEEEEEeccC-----CchHH--------HHHHHHH-------Hhc-CCCCEEEEEecCC
Confidence 3557777788888888888888732 11111 1222322 221 2899999888875
No 168
>KOG1255|consensus
Probab=40.40 E-value=85 Score=28.86 Aligned_cols=56 Identities=18% Similarity=0.335 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhh
Q psy503 69 EILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSA 142 (333)
Q Consensus 69 eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a 142 (333)
.+.++|+.+-.|++.+.+|+-|.-|+ ...+++.+|+... .-..-+||++++|-|..
T Consensus 218 ~FID~L~vFl~D~~t~GIiliGEIGG-------------~AEe~AA~flk~~-----nSg~~~kPVvsFIAG~t 273 (329)
T KOG1255|consen 218 NFIDCLEVFLEDPETEGIILIGEIGG-------------SAEEEAAEFLKEY-----NSGSTAKPVVSFIAGVT 273 (329)
T ss_pred cHHHHHHHHhcCcccceEEEEeccCC-------------hhhHHHHHHHHHh-----ccCCCCCceeEEeeccc
Confidence 36677888888999999999998443 1223344443221 12336899999998864
No 169
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=39.32 E-value=2.7e+02 Score=26.40 Aligned_cols=132 Identities=15% Similarity=0.072 Sum_probs=69.8
Q ss_pred cCccceEEEEeee-c-CCCEEEEEEcCCCCCCCCCHHHHHHHHHHH-HHHhcCCCceEEEEEeCCCCccccCCCch-hhc
Q psy503 31 GRKLTQIIYHNSP-E-RPGIVELCMNRPQARNALNATLVEEILTAV-EAIRGDEEVRCVLLRSLVKDVFCAGADLK-HRL 106 (333)
Q Consensus 31 ~~~~~~~~~~~~~-~-~~~v~~Itln~p~~~Nalt~~~~~eL~~~l-~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~-~~~ 106 (333)
.+.|+++.+--.+ . .+.-.+.|+- + .|.++++-+.+-...+ .++...+.-++.||-|...+.|--+-+.. .+.
T Consensus 95 ~~~FDlvi~p~HD~~~~~~Nvl~t~g-a--~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~ 171 (311)
T PF06258_consen 95 PRPFDLVIVPEHDRLPRGPNVLPTLG-A--PNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLL 171 (311)
T ss_pred ccccCEEEECcccCcCCCCceEeccc-C--CCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHH
Confidence 4457777774322 1 1222223322 2 4999999888876665 45666667778877776456555443310 110
Q ss_pred ----------------ccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEEEeCCeEEeccccc
Q psy503 107 ----------------TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK 170 (333)
Q Consensus 107 ----------------~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~rias~~a~f~~pe~~ 170 (333)
..+..+-.+.... +...+.. .|-+-..+|.--+-=+.+.-.||.+++|+|+.=.+.|+-
T Consensus 172 ~~l~~~~~~~~~~~~vttSRRTp~~~~~~---L~~~~~~--~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA~ 246 (311)
T PF06258_consen 172 DQLAALAAAYGGSLLVTTSRRTPPEAEAA---LRELLKD--NPGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEAA 246 (311)
T ss_pred HHHHHHHHhCCCeEEEEcCCCCcHHHHHH---HHHhhcC--CCceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHHH
Confidence 0010011111111 1112222 233323355555556779999999999999876666643
No 170
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=39.15 E-value=72 Score=29.95 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCCceEEEEEeC
Q psy503 69 EILTAVEAIRGDEEVRCVLLRSL 91 (333)
Q Consensus 69 eL~~~l~~~~~d~~v~vvVl~g~ 91 (333)
.+.+.|+.+..||+.++|++..+
T Consensus 185 ~~~D~l~~l~~Dp~T~~I~lylE 207 (286)
T TIGR01019 185 SFIDVLEAFEKDPETEAIVMIGE 207 (286)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEe
Confidence 56777888888999999999887
No 171
>KOG0540|consensus
Probab=38.81 E-value=1.2e+02 Score=30.40 Aligned_cols=104 Identities=18% Similarity=0.311 Sum_probs=71.5
Q ss_pred EEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcC
Q psy503 52 CMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESI 130 (333)
Q Consensus 52 tln~p~-~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 130 (333)
--|+|. -...|..+.-....+.++-..+. .+-.|.|... ++ |-.|.+.... .+...-..|+......
T Consensus 354 vgnn~kf~~G~L~s~sa~KgarfIe~c~q~-~IPLi~l~ni-~G-fm~g~~~e~~---------gIaK~gAklv~a~a~a 421 (536)
T KOG0540|consen 354 VGNNPKFAGGVLFSESAVKGARFIELCDQR-NIPLIFLQNI-TG-FMVGRAAEAG---------GIAKHGAKLVYAVACA 421 (536)
T ss_pred eccCchhcccccchhhhhhhHHHHHHHHhc-CCcEEEEEcc-CC-ccccchhhhh---------chhhhhhhhhhhhhhc
Confidence 345554 23567777777777777766544 4666666666 44 8888776542 2334445678888888
Q ss_pred CCcEEEEechhhhHhhHH---HHHhCCEEEEeCCeEEecc
Q psy503 131 PVPVLAVLDGSAYGGGLE---MALACDIRVAASNVRMGLV 167 (333)
Q Consensus 131 ~kP~Iaav~G~a~GgG~~---Lal~cD~rias~~a~f~~p 167 (333)
..|-|..+-|.+.||-.. -.++-|+.++.+++++++-
T Consensus 422 kvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~Iavm 461 (536)
T KOG0540|consen 422 KVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVM 461 (536)
T ss_pred cCceEEEEecCccCCcccccccccCCceeEEcccceeeec
Confidence 999999999999997655 4566788888888877643
No 172
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=36.04 E-value=71 Score=32.81 Aligned_cols=72 Identities=11% Similarity=0.100 Sum_probs=48.1
Q ss_pred CCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHh
Q psy503 80 DEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALA 152 (333)
Q Consensus 80 d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~ 152 (333)
.|++-|+|-|-. .=-+..|.+..++...+.+....=+..+.+.+..+..+..|+|.+||-+..---.++..-
T Consensus 322 ~P~~~VlVaTvr-aLK~hgg~~~~~l~~en~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I 393 (557)
T PRK13505 322 KPDAVVIVATVR-ALKMHGGVAKDDLKEENVEALKKGFANLERHIENIRKFGVPVVVAINKFVTDTDAEIAAL 393 (557)
T ss_pred CCCEEEEEeehH-HHHHcCCCChhhccccCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence 455555555554 323566777766666555555555566777777888899999999999887666555443
No 173
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=33.47 E-value=1.7e+02 Score=27.91 Aligned_cols=31 Identities=6% Similarity=0.099 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEe
Q psy503 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRS 90 (333)
Q Consensus 60 Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g 90 (333)
--++++.+.+|.+.+++.-+++++.++|+|.
T Consensus 55 s~~t~~~w~~la~~i~~~~~~~~~dG~VVtH 85 (323)
T smart00870 55 SNMTPADWLKLAKRINEALADDGYDGVVVTH 85 (323)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEec
Confidence 4589999999999998865556666655554
No 174
>PRK14053 methyltransferase; Provisional
Probab=33.25 E-value=77 Score=27.73 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=43.1
Q ss_pred EEEeeecCCCEEEEEEcCCC---CCCCCCHHHHHH---HHHHHHHHhcCCCceEEEEEeCCCCccccCCCc
Q psy503 38 IYHNSPERPGIVELCMNRPQ---ARNALNATLVEE---ILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102 (333)
Q Consensus 38 ~~~~~~~~~~v~~Itln~p~---~~Nalt~~~~~e---L~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl 102 (333)
.|.+-+++..|+++||...- ..-++.-....| +...+..+-.+|++|.+||+|..-+..-+|--|
T Consensus 14 dY~vG~~~S~VAVvTL~S~~~~~~gaAI~G~c~TENlGIEKvI~NvisNpNIRflilcG~Ev~GHltGqsL 84 (194)
T PRK14053 14 DYTVGNPESRIAVVTLASSIESFPEAAIWGSSKTENLGVEKIIVNVISNSNIRYVLLCGGESRGHLAGHSL 84 (194)
T ss_pred eEEeCCCCCcEEEEEccccccccCCceEEeeccccccCHHHHHHHhhcCCCceEEEEecCccCCccccHHH
Confidence 45556778899999998752 123333333333 666777777899999999999854445555444
No 175
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=31.33 E-value=4.1e+02 Score=24.24 Aligned_cols=141 Identities=11% Similarity=0.126 Sum_probs=80.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC-CCCccccCCCchhhcccCHHHHHHH---HHHHHHHHHHHhcCCCcE
Q psy503 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSL-VKDVFCAGADLKHRLTLNEDQIRSF---VSTLRYMTCQLESIPVPV 134 (333)
Q Consensus 59 ~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~-~g~~F~~G~Dl~~~~~~~~~~~~~~---~~~~~~l~~~l~~~~kP~ 134 (333)
...+..+.-..|.+++.+.=.+..-+.||+--+ .+..++ ..++...+ +....+.+...+...-||
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~g-----------rreEllGi~~alAhla~a~a~AR~~GHpv 108 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYG-----------RREELLGINQALAHLAKAYALARLAGHPV 108 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccc-----------hHHHHhhHHHHHHHHHHHHHHHHHcCCCe
Confidence 577887777777766554432222233333222 133222 12232222 223334444555678899
Q ss_pred EEEechhhhHhhH-HHHHhCCEEEEeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCC--CHHHHHHcC
Q psy503 135 LAVLDGSAYGGGL-EMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV--DSTEAKSIG 211 (333)
Q Consensus 135 Iaav~G~a~GgG~-~Lal~cD~rias~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~i--sa~eAl~~G 211 (333)
|+.|-|.+++||| .-.+.+|-.+|-+++... ..+ --+..+..+ +....-.++.-+--.| +.+--.++|
T Consensus 109 I~Lv~G~A~SGaFLA~GlqA~rl~AL~ga~i~-------vM~-~~s~ARVTk-~~ve~Le~la~s~PvfA~gi~ny~~lG 179 (234)
T PF06833_consen 109 IGLVYGKAMSGAFLAHGLQANRLIALPGAMIH-------VMG-KPSAARVTK-RPVEELEELAKSVPVFAPGIENYAKLG 179 (234)
T ss_pred EEEEecccccHHHHHHHHHhcchhcCCCCeee-------cCC-hHHhHHHhh-cCHHHHHHHhhcCCCcCCCHHHHHHhc
Confidence 9999999999998 588899998886644322 211 122223333 4444555555554443 667777899
Q ss_pred CcceecCC
Q psy503 212 LVNTLTPQ 219 (333)
Q Consensus 212 lv~~vv~~ 219 (333)
.++++.+.
T Consensus 180 ~l~~l~~~ 187 (234)
T PF06833_consen 180 ALDELWDG 187 (234)
T ss_pred cHHHHhcc
Confidence 99999883
No 176
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=31.19 E-value=1.3e+02 Score=28.38 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCCceEEEEEeC
Q psy503 69 EILTAVEAIRGDEEVRCVLLRSL 91 (333)
Q Consensus 69 eL~~~l~~~~~d~~v~vvVl~g~ 91 (333)
.+.+.|+.+..||+.++|++..+
T Consensus 187 ~~~D~l~~l~~Dp~T~~I~lylE 209 (291)
T PRK05678 187 NFIDVLEAFEEDPETEAIVMIGE 209 (291)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEe
Confidence 46777888888999999998887
No 177
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=28.89 E-value=36 Score=28.66 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=18.6
Q ss_pred CceEEEEEeCCCCccccCCCchhh
Q psy503 82 EVRCVLLRSLVKDVFCAGADLKHR 105 (333)
Q Consensus 82 ~v~vvVl~g~~g~~F~~G~Dl~~~ 105 (333)
.+++.=+.|. +.+.|+|+||+--
T Consensus 79 Si~v~D~Agn-~hVLCaGIDLNPA 101 (178)
T PF12268_consen 79 SIKVKDLAGN-NHVLCAGIDLNPA 101 (178)
T ss_pred ccccccCCCC-ceeEEecccCCHh
Confidence 4667777887 8999999999754
No 178
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=28.08 E-value=3.3e+02 Score=26.41 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=28.1
Q ss_pred EEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q psy503 52 CMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL 91 (333)
Q Consensus 52 tln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~ 91 (333)
.+|-+. .-++++.+..|.+.+.+.-.++++.+||||-.
T Consensus 72 ~~ni~S--~~m~~~~w~~la~~I~~~~~~~~~dGvVItHG 109 (351)
T COG0252 72 VLNIDS--SDMTPEDWLRLAEAINEALDDGDVDGVVITHG 109 (351)
T ss_pred eccCCc--ccCCHHHHHHHHHHHHHHhccCCCCeEEEeCC
Confidence 344443 66999999999999999877776666666553
No 179
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=27.08 E-value=92 Score=26.97 Aligned_cols=57 Identities=9% Similarity=0.094 Sum_probs=38.5
Q ss_pred EEEeeecCCCEEEEEEcCCCCCC------CCCHHHHH---HHHHHHHHHhcCCCceEEEEEeCCCC
Q psy503 38 IYHNSPERPGIVELCMNRPQARN------ALNATLVE---EILTAVEAIRGDEEVRCVLLRSLVKD 94 (333)
Q Consensus 38 ~~~~~~~~~~v~~Itln~p~~~N------alt~~~~~---eL~~~l~~~~~d~~v~vvVl~g~~g~ 94 (333)
.|.+-+++..|+++||....... ++.-.... .+...+..+-.+|++|.+|++|..-+
T Consensus 14 dY~vGdp~S~VAV~TL~S~~~~~~l~~gaAI~G~~~TENlGIEKvI~NvisNpnIRflilcG~Ev~ 79 (176)
T PF04208_consen 14 DYVVGDPESPVAVCTLGSHLLQAPLDAGAAIAGPCKTENLGIEKVIANVISNPNIRFLILCGSEVK 79 (176)
T ss_pred ceEECCCCCCEEEEECccccchhhhhcCceeeecccccccCHHHHHHHHhcCCCceEEEEecCccC
Confidence 45667778999999998754211 11111222 25667777888999999999998433
No 180
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=26.93 E-value=24 Score=20.86 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=8.7
Q ss_pred HHHHHHHhccCCCCC
Q psy503 316 VEGLKSFLGKYKPVY 330 (333)
Q Consensus 316 ~egi~aflekr~p~~ 330 (333)
+.-++.||||||-..
T Consensus 5 K~SLqRFLeKRK~R~ 19 (27)
T PF09425_consen 5 KASLQRFLEKRKDRL 19 (27)
T ss_dssp -HHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhh
Confidence 567889999998543
No 181
>PRK06091 membrane protein FdrA; Validated
Probab=26.92 E-value=1.6e+02 Score=30.31 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhh
Q psy503 69 EILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAY 143 (333)
Q Consensus 69 eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~ 143 (333)
.+.+.|+.+..||+.++|++.+. +. .+..+ + +++.....+.||+|+..-|..-
T Consensus 239 ~~~D~L~~L~~DP~TkvIvly~k-pp---------------aE~v~---~---~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 239 SALTALEMLSADEKSEVIAFVSK-PP---------------AEAVR---L---KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEe-cC---------------chHHH---H---HHHHHHhhCCCCEEEEEecCCc
Confidence 45667777777888888888876 31 01221 1 3333444458999999988654
No 182
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=24.26 E-value=4.5e+02 Score=25.38 Aligned_cols=43 Identities=5% Similarity=0.122 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q psy503 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL 91 (333)
Q Consensus 48 v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~ 91 (333)
|-...+.+-+ .--++++.+..|.+.+++.-.++++..+|+|..
T Consensus 72 i~~~~~~~id-S~~mt~~dw~~la~~I~~~~~~~~~~GiVVtHG 114 (349)
T TIGR00520 72 IKGEQIVNVG-SQDMNEEVLLKLAKGINELLASDDYDGIVITHG 114 (349)
T ss_pred EEEEEccCCC-cccCCHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 3344443333 356899999999999988766666666666553
No 183
>PLN03037 lipase class 3 family protein; Provisional
Probab=22.51 E-value=76 Score=32.36 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEE
Q psy503 116 FVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRV 157 (333)
Q Consensus 116 ~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~ri 157 (333)
.+..+.++...........=-.|-||.+||.+.+..+.|+..
T Consensus 300 Vl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~DIa~ 341 (525)
T PLN03037 300 VMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYEAAR 341 (525)
T ss_pred HHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHHHHH
Confidence 334444454444333334444589999999999999988764
No 184
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=22.10 E-value=2.4e+02 Score=28.00 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCce-EEEEEeC
Q psy503 60 NALNATLVEEILTAVEAIRGDEEVR-CVLLRSL 91 (333)
Q Consensus 60 Nalt~~~~~eL~~~l~~~~~d~~v~-vvVl~g~ 91 (333)
--++++.+.+|.+.+.+.-.+ ++. +||++|+
T Consensus 131 ~~mtp~~W~~La~~I~~~~~~-~~dGvVVtHGT 162 (419)
T PRK04183 131 ENMTPEYWVEIAEAVYEEIKN-GADGVVVAHGT 162 (419)
T ss_pred hhCCHHHHHHHHHHHHHHhhc-cCCeEEEecCC
Confidence 558899999999999876544 344 4455555
No 185
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=21.46 E-value=2e+02 Score=21.81 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHH-hcCCCcEEEEechhh
Q psy503 67 VEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL-ESIPVPVLAVLDGSA 142 (333)
Q Consensus 67 ~~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~kP~Iaav~G~a 142 (333)
-+++.++|.++-+++++.+|+++-. ..+.+.+.+..+ .....|+|..+-+.-
T Consensus 27 ~ee~~~~l~~l~~~~~~gIIii~e~------------------------~~~~~~~~l~~~~~~~~~P~iv~IP~~~ 79 (95)
T PF01990_consen 27 PEEAEEALKELLKDEDVGIIIITED------------------------LAEKIRDELDEYREESSLPLIVEIPSKE 79 (95)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEHH------------------------HHTTHHHHHHHHHHTSSSSEEEEESTTC
T ss_pred HHHHHHHHHHHhcCCCccEEEeeHH------------------------HHHHHHHHHHHHHhccCCceEEEcCCCC
Confidence 4577788888887889988888875 122233333333 466899999986553
No 186
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=21.35 E-value=2.7e+02 Score=26.66 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCce-EEEEEeC
Q psy503 60 NALNATLVEEILTAVEAIRGDEEVR-CVLLRSL 91 (333)
Q Consensus 60 Nalt~~~~~eL~~~l~~~~~d~~v~-vvVl~g~ 91 (333)
.-++++.+.+|.+.+++.-.+ +. +||++|+
T Consensus 57 s~~tp~~w~~la~~I~~~~~~--~dG~VVtHGT 87 (336)
T TIGR00519 57 ENMKPEYWVEIAEAVKKEYDD--YDGFVITHGT 87 (336)
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCeEEEccCC
Confidence 448999999999999875444 44 5555555
No 187
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=20.68 E-value=1.4e+02 Score=30.76 Aligned_cols=154 Identities=14% Similarity=0.126 Sum_probs=73.0
Q ss_pred hcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhHhhHHHHHhCCEEE
Q psy503 78 RGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRV 157 (333)
Q Consensus 78 ~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~a~GgG~~Lal~cD~ri 157 (333)
.-.|++-|+|-|-. .=-+..|.+...+...+.+..+.=+..+.+=+..+..+..|+|.+||-+.-=---|+.+.+++.-
T Consensus 319 gl~P~~~VlVaTvR-ALK~HGG~~~~~l~~eNl~al~~G~~NL~rHIeNik~fGvpvVVAIN~F~tDT~aEi~~I~~~~~ 397 (557)
T PF01268_consen 319 GLKPDAVVLVATVR-ALKMHGGVAKDDLNEENLEALEKGFANLERHIENIKKFGVPVVVAINRFPTDTDAEIELIRELCE 397 (557)
T ss_dssp T---SEEEEEEEHH-HHHHHTT--GGGTTS--HHHHHHHHHHHHHHHHHHHCTT--EEEEEE--TTS-HHHHHHHHHHCC
T ss_pred ccCcceEEEeeech-HHHhhcCCCccccCccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 44577666666655 32356677776665555555544455555666677889999999999988877788877766543
Q ss_pred EeCCeEEeccccccCccCChhhhhhcccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCCCCChhHHHHHHHHHHHHH
Q psy503 158 AASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDI 237 (333)
Q Consensus 158 as~~a~f~~pe~~~Gl~p~~g~~~~L~r~iG~~~a~~llltG~~isa~eAl~~Glv~~vv~~~~~~~~l~~~a~~~a~~i 237 (333)
.. .+.+...++- .=++-+..-|. ...+-.-+ .++-.+ .....+. ...+.+....+|++|
T Consensus 398 ~~-Gv~~avs~~w---a~GGeGa~eLA--------~~Vv~a~e---e~~~~~---fk~LY~l---~~sI~eKIe~IA~eI 456 (557)
T PF01268_consen 398 EL-GVRAAVSEHW---AKGGEGAVELA--------EAVVEACE---EEEPSN---FKPLYDL---EDSIEEKIETIATEI 456 (557)
T ss_dssp CC-CEEEEEC-HH---HHGGGGCHHHH--------HHHHHH-H---HHS---------SS-T---TS-HHHHHHHHHHHT
T ss_pred hC-CCCEEEechh---hcccccHHHHH--------HHHHHHhh---ccCCCC---cCcccCC---cccHHHHHHHHHhhh
Confidence 21 2223322210 01111222222 22221110 011111 2233443 245777888888887
Q ss_pred h-----hcCHHHHHHHHHHhc
Q psy503 238 A-----HNGPIAVRMAKRSID 253 (333)
Q Consensus 238 a-----~~~~~a~~~~K~~l~ 253 (333)
= ..++.|....|+.=.
T Consensus 457 YGA~~V~~S~~A~kqLk~~e~ 477 (557)
T PF01268_consen 457 YGADGVEYSPKAKKQLKKIEK 477 (557)
T ss_dssp T--SEEEE-HHHHHHHHHHHH
T ss_pred cCCCcceeCHHHHHHHHHHHh
Confidence 2 347778777777654
No 188
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=20.43 E-value=4.1e+02 Score=20.51 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeCCCCccccCCCchhhcccCHHHHHHHHHHHHHHHHH-HhcCCCcEEEEech
Q psy503 68 EEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ-LESIPVPVLAVLDG 140 (333)
Q Consensus 68 ~eL~~~l~~~~~d~~v~vvVl~g~~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~kP~Iaav~G 140 (333)
.++.++|+++-.++++.+|++|-. ++..+...... +....+|+|-.+.|
T Consensus 30 ee~~~~l~~l~~~~d~gII~Ite~------------------------~~~~i~e~i~~~~~~~~~P~ii~IP~ 79 (100)
T PRK02228 30 EKLDEAVEEVLEDDDVGILVMHDD------------------------DLEKLPRRLRRTLEESVEPTVVTLGG 79 (100)
T ss_pred HHHHHHHHHHhhCCCEEEEEEehh------------------------HhHhhHHHHHHHHhcCCCCEEEEECC
Confidence 567778888766788888887765 11222333333 66788999999965
No 189
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=20.32 E-value=6.9e+02 Score=23.33 Aligned_cols=44 Identities=2% Similarity=-0.058 Sum_probs=25.4
Q ss_pred eecCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC
Q psy503 42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK 93 (333)
Q Consensus 42 ~~~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~v~vvVl~g~~g 93 (333)
...++++...++.+.. .+ ++++-|.+..... .....+.+||.|.
T Consensus 17 ~~~~~~~~f~~~~~~~-~~----~~~~~l~~~~~~~---~~~~~i~~TGgGa 60 (279)
T TIGR00555 17 EEPKGRRKFKTFETTN-ID----KFIEWLKNQIHRH---SRITTLCATGGGA 60 (279)
T ss_pred EcCCCcEEEEEeeccc-HH----HHHHHHHHHHHhh---cCceEEEEECCcH
Confidence 3347788888888764 11 4444444333333 2356788898743
No 190
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=20.04 E-value=2.5e+02 Score=21.57 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=35.9
Q ss_pred cCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--------ceEEEEEeC
Q psy503 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEE--------VRCVLLRSL 91 (333)
Q Consensus 44 ~~~~v~~Itln~p~~~Nalt~~~~~eL~~~l~~~~~d~~--------v~vvVl~g~ 91 (333)
..+++.+++++.| ++......+.+.+..+..... ++.|||--.
T Consensus 6 ~~~~v~ii~~~g~-----l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s 56 (117)
T PF01740_consen 6 THDGVLIIRLDGP-----LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMS 56 (117)
T ss_dssp EETTEEEEEEESE-----ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEET
T ss_pred EECCEEEEEEeeE-----EEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEE
Confidence 3689999999987 888889999999888877654 789999886
Done!