RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy503
(333 letters)
>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase.
Length = 251
Score = 262 bits (672), Expect = 2e-87
Identities = 122/286 (42%), Positives = 177/286 (61%), Gaps = 39/286 (13%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GIVEL ++RP+A+NA+ ++ + +A E I+ D R V+LRS V VFCAGADLK R
Sbjct: 4 GIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERR 63
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
++ +++ FV++LR LE++ +P +AV++G+A GGGLE+AL+CD+R+ GL
Sbjct: 64 KMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGL 123
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
ET LAIIPGAGGTQRLPR+VG AKELI+TGR + + EA S+GLVN P A
Sbjct: 124 PETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVP----AGEA 179
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTE 286
Y +L +A++I GP+A++MAK++I+ +GS+ +
Sbjct: 180 YEKALELAQEINQKGPLAIKMAKKAIN---------------------EGSEVDMA---- 214
Query: 287 NQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
SG+E E CY++V++T+DR+EGL +F K KPVY G
Sbjct: 215 ----------SGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVYTG 250
>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 253 bits (649), Expect = 7e-84
Identities = 125/287 (43%), Positives = 171/287 (59%), Gaps = 39/287 (13%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
P +V++ +NRP+A NAL+ L+EE+ + I + VR V+L + FCAGADLK R
Sbjct: 12 PHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKER 71
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
+NE+Q+R VS +R +E +P PV+A ++G A GGGLE+ALACD R+AA + +G
Sbjct: 72 AGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLG 131
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
L ET LAIIPGAGGTQRLPR++G+ AKELIYTGR + + EAK IGLV + P + +
Sbjct: 132 LTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEK 191
Query: 226 AYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGT 285
A + IAE IA NGPIAVR AK +I S G
Sbjct: 192 A----IEIAEKIASNGPIAVRQAKEAI-----------------------------SNGI 218
Query: 286 ENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ ++G++ E Y+ I T+DR+EGL++F K KP+YKG
Sbjct: 219 QVD------LHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMYKG 259
>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate
synthase, methylmalonyl-CoA decarboxylase,
3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA
isomerase. Many of these play important roles in fatty
acid metabolism. In addition to a conserved structural
core and the formation of trimers (or dimers of
trimers), a common feature in this superfamily is the
stabilization of an enolate anion intermediate derived
from an acyl-CoA substrate. This is accomplished by two
conserved backbone NH groups in active sites that form
an oxyanion hole.
Length = 195
Score = 196 bits (501), Expect = 2e-62
Identities = 76/173 (43%), Positives = 114/173 (65%), Gaps = 3/173 (1%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
G+ + +NRP+ RNAL+ +++E+ A++ D +VR V+L FCAGADLK
Sbjct: 5 RDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTG-AGKAFCAGADLK 63
Query: 104 --HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
L+ ++ R+F+ L+ + L +P PV+A ++G+A GGGLE+ALACDIR+AA +
Sbjct: 64 ELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAED 123
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
+ GL E KL ++PG GGTQRLPR+VG A+EL+ TGR + + EA +GLV+
Sbjct: 124 AKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVD 176
>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid
metabolism].
Length = 257
Score = 186 bits (473), Expect = 2e-57
Identities = 79/210 (37%), Positives = 121/210 (57%), Gaps = 6/210 (2%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
GI + +NRP+ NALN +++E+ A++ D +VR V+L F AGADLK
Sbjct: 11 REDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTG-AGKAFSAGADLK 69
Query: 104 HRLTLNEDQI-RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
L+ + + + + + L +P PV+A ++G A GGGLE+ALACDIR+AA +
Sbjct: 70 ELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDA 129
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
+ GL E L ++PG GGTQRLPR++G AKEL+ TG + + EA +GLV+ + P+
Sbjct: 130 KFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEV---VPD 186
Query: 223 QNAAYLASLRIAEDIAHNGPIAVRMAKRSI 252
+L +A +A P+A+ KR +
Sbjct: 187 AEELLERALELARRLA-APPLALAATKRLV 215
>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family. This family
contains a diverse set of enzymes including: Enoyl-CoA
hydratase. Napthoate synthase. Carnitate racemase.
3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA
delta-isomerase.
Length = 245
Score = 181 bits (462), Expect = 7e-56
Identities = 82/203 (40%), Positives = 123/203 (60%), Gaps = 5/203 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G+ + ++RP+A NAL+A L+ E++ A+E + D V+ ++L F AGAD+K
Sbjct: 7 GVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGG-PGAFSAGADIKEMA 65
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
Q F + + +LE +P PV+A ++G A GGGLE+ALACD R+AA N + GL
Sbjct: 66 AEPLAQQAQFSLEAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAKFGL 125
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
E KL IIPGAGGTQRLPRI+G+ A E++ TGR + + EA +GLV+ + P+ A
Sbjct: 126 PEVKLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGLVDKVVPEEQLVEEA 185
Query: 227 YLASLRIAEDIAHNGPIAVRMAK 249
+ +A+ +A P+A+ K
Sbjct: 186 ----IELAQRLADKPPLALAALK 204
>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated.
Length = 260
Score = 174 bits (444), Expect = 5e-53
Identities = 97/287 (33%), Positives = 145/287 (50%), Gaps = 41/287 (14%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
I + +NRP+A NALN+ ++E+ T ++ I D+ V V+L + F AGAD+
Sbjct: 13 HIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMK 72
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
LNE++ R F + +LE++ PV+A ++G A GGG E+++ACDIR+A+ + G
Sbjct: 73 DLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQ 132
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
E L I PG GGTQRL RIVG AKELIYTG ++++ EA IGLVN + A
Sbjct: 133 PEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEA 192
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYR-DGQSTHSPGRDGQGSKGGESKGT 285
+A IA N PIAV++ K +I+ RG Q D
Sbjct: 193 K----ALANKIAANAPIAVKLCKDAIN---RGMQVDID---------------------- 223
Query: 286 ENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ + E + T+D+ EG+ +F+ K + +K
Sbjct: 224 -----------TAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNFKN 259
>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 164 bits (418), Expect = 4e-49
Identities = 81/289 (28%), Positives = 128/289 (44%), Gaps = 47/289 (16%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
G++ + +NRP +NAL A + + + A+EA D VR V+L + F AG D+K
Sbjct: 14 GVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGR-AFSAGGDIKDFP 72
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
D++ LR + ++P PV+A ++G A G G+ +ALACD+ A+ + +
Sbjct: 73 KAPPKPPDELAPVNRFLR----AIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAK 128
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
L KL + P AGG+ LPR++G A E++ G + + EA IGLVN + P
Sbjct: 129 FSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELD 188
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
A A +A A+R KR+I+
Sbjct: 189 AEA----DAQAAKLAAGPASALRYTKRAIN------------------------------ 214
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E + + E + R++RT D EG +F+ K KP + G
Sbjct: 215 --AATLTELEEA---LAREAAGFGRLLRTPDFREGATAFIEKRKPDFTG 258
>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional.
Length = 255
Score = 151 bits (384), Expect = 3e-44
Identities = 92/290 (31%), Positives = 141/290 (48%), Gaps = 50/290 (17%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
++ L +NRP+ARNALN L+ +++ +EA D + ++ + F AGADL
Sbjct: 11 RVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNAR-FFAAGADL---- 65
Query: 107 TLNEDQIRSFVSTLRYMTCQL----ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
NE + +TL QL ++ P++A ++G A G G E+AL CDI +A N
Sbjct: 66 --NEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENA 123
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
R GL E L I+PGAGGTQRL R VG LA +++ TG + + +A+ GLV+ + P
Sbjct: 124 RFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPELT 183
Query: 223 QNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282
A L++A IA + P+A+R AK+++ R Q
Sbjct: 184 LERA----LQLASKIARHSPLALRAAKQAL---------RQSQEV--------------- 215
Query: 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+G+ E + + T+DR EG+ +FL K P +KG
Sbjct: 216 -----------DLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDFKG 254
>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 151 bits (384), Expect = 4e-44
Identities = 74/210 (35%), Positives = 106/210 (50%), Gaps = 9/210 (4%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ L +NRP+ARNAL+A L + A+ D++V V+L FCAG DLK
Sbjct: 11 HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTG-ADPAFCAGLDLKE 69
Query: 105 RLTLNEDQIRSFVST-LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
L D L + ++ PV+ ++G+A GGLE+ALACDI +A+ R
Sbjct: 70 ---LGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERAR 126
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
++ I+PG G + RLP+ VGI A+ + TG +D+ +A GLV + P +
Sbjct: 127 FADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELL 186
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSID 253
A R+A IA N P AVR K S D
Sbjct: 187 PRA----RRLAASIAGNNPAAVRALKASYD 212
>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 150 bits (382), Expect = 8e-44
Identities = 69/217 (31%), Positives = 118/217 (54%), Gaps = 20/217 (9%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI ++ +NRP NAL+ + EE++ ++ ++ D +R V+L S FCAG D+K
Sbjct: 12 GIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVIL-SGEGGAFCAGLDVK--- 67
Query: 107 TLNEDQIRSFV----------STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
++ + + + ++ +PVPV+A L+G +GGGL++AL DIR
Sbjct: 68 SVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIR 127
Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTL 216
+AA + ++ ++E K ++P GT L +V +A+EL YT R+ + EA +GLV +
Sbjct: 128 IAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHV 187
Query: 217 TPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSID 253
+ +P A+L +A +IA P A+ AKR I+
Sbjct: 188 S-DDP-----LAAALALAREIAQRSPDAIAAAKRLIN 218
>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 149 bits (379), Expect = 3e-43
Identities = 78/216 (36%), Positives = 114/216 (52%), Gaps = 14/216 (6%)
Query: 44 ERPG-IVELCMNRPQARNALNA-TLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGAD 101
ER G IV L MNRP+ RNAL+ V+ ++ A AI D VR V+L F +G +
Sbjct: 8 ERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGT-AFSSGGN 66
Query: 102 LKH------RLTLNEDQIR-SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD 154
+K + IR + ++ + L ++ VPV+A ++G A G G ++A CD
Sbjct: 67 VKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCD 126
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
IR+A+ R KL +IPG GG LPRI+G+ A E+ +TG +D+ A GLV+
Sbjct: 127 IRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVS 186
Query: 215 TLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKR 250
+ P + AA +AE IA N P A+R+ KR
Sbjct: 187 RVVPADQLLPAA----RALAERIAANPPHALRLTKR 218
>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 144 bits (365), Expect = 2e-41
Identities = 97/298 (32%), Positives = 146/298 (48%), Gaps = 66/298 (22%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R G++ L NRP+A NALN L++E+ A+ A DE + +++ K F AGAD+K
Sbjct: 13 RVGLITL--NRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEK-AFAAGADIK- 68
Query: 105 RLTLNEDQIRSFVSTLR--YMTC--QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
E SF+ + Y+T ++ I PV+A + G A GGG E+A+ CDI +AA
Sbjct: 69 -----EMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAAD 123
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQN 220
+ G E KL ++PG GG+QRL R VG A +L TGR++D+ EA+ GLV+ + P
Sbjct: 124 TAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVP-- 181
Query: 221 PNQNAAYLA--SLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSK 278
A L +L A IA AV MAK ++
Sbjct: 182 ----ADKLLDEALAAATTIASFSLPAVMMAKEAV-------------------------- 211
Query: 279 GGESKGTENQNREFQGRYSGMEWEGICYDR-----VIRTQDRVEGLKSFLGKYKPVYK 331
NR ++ + EG+ ++R + T+D+ EG+ +F+ K KPV+K
Sbjct: 212 ----------NRAYETTLA----EGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVFK 255
>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 144 bits (365), Expect = 2e-41
Identities = 80/287 (27%), Positives = 132/287 (45%), Gaps = 42/287 (14%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + +N P A NAL++ ++ E+ ++ + D+ VR V++ + F AGAD+K
Sbjct: 11 HVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGR-FFSAGADIKEFT 68
Query: 107 TLNE-DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
++ E +Q + ++E PV+A + G+A GGGLE+A++C IR A + ++G
Sbjct: 69 SVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLG 128
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
L E L +IPG GTQRLPR VG A E++ T + EA GLVN + P+ +
Sbjct: 129 LPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLDD 188
Query: 226 AYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGT 285
A ++A+ IA P R +
Sbjct: 189 A----KKLAKKIAGKSPATTRAVLELL--------------------------------- 211
Query: 286 ENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ Y G++ E + V ++D EG+++FL K KP + G
Sbjct: 212 -QTTKSSS-YYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSFSG 256
>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 715
Score = 146 bits (372), Expect = 2e-39
Identities = 72/191 (37%), Positives = 110/191 (57%), Gaps = 5/191 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI EL + P + N L+ + + A++A+ +++ +LL S KD F GAD+ L
Sbjct: 16 GIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTS-AKDAFIVGADITEFL 74
Query: 107 TL---NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+L E+++ ++ + +LE +PVP +A ++G A GGG E LA D RVA+ + R
Sbjct: 75 SLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDAR 134
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
+GL ETKL I+PG GGT RLPR++G A E I G+ V + +A +G V+ + Q
Sbjct: 135 IGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQ 194
Query: 224 NAAYLASLRIA 234
AA LA L+ A
Sbjct: 195 EAA-LALLKQA 204
>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional.
Length = 261
Score = 137 bits (346), Expect = 1e-38
Identities = 77/210 (36%), Positives = 113/210 (53%), Gaps = 13/210 (6%)
Query: 44 ERP--GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGAD 101
ERP G+ L +NRP+ARNALN + +++ + D ++R ++L + VF AGAD
Sbjct: 12 ERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTG-GEKVFAAGAD 70
Query: 102 LKHRLTLN--EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
+K T E +R T RY + P PV+A ++G A GGG E+A+ DI VA
Sbjct: 71 IKEFATAGAIEMYLRH---TERYWEA-IAQCPKPVIAAVNGYALGGGCELAMHADIIVAG 126
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
+ G E K+ ++PGAGGTQRL R VG A + TG +V + EA +IGLV+ +
Sbjct: 127 ESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVE- 185
Query: 220 NPNQNAAYLASLRIAEDIAHNGPIAVRMAK 249
+L +A +IA P+A+ K
Sbjct: 186 ---DEQTLPRALELAREIARMPPLALAQIK 212
Score = 30.8 bits (70), Expect = 0.95
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 312 TQDRVEGLKSFLGKYKPVYKG 332
++D+ EG+ +FL K KP YKG
Sbjct: 240 SEDQKEGMDAFLEKRKPAYKG 260
>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 136 bits (345), Expect = 3e-38
Identities = 68/218 (31%), Positives = 105/218 (48%), Gaps = 15/218 (6%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL---- 102
+ ++ +NRP NA+N E+ + D EVR V+L K F G DL
Sbjct: 15 HVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKH-FSYGIDLPAMA 73
Query: 103 -------KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDI 155
K L +R + L+ + PV+A + G GGG+++ ACD+
Sbjct: 74 GVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDM 133
Query: 156 RVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNT 215
R A+++ + + E L ++ G QRLPRI+G +EL TGR +D+ EA+ IGLVN
Sbjct: 134 RYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNR 193
Query: 216 LTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSID 253
+ + +A A+ A +IA P+AVR K +D
Sbjct: 194 VY---DDADALLAAAHATAREIAAKSPLAVRGTKEVLD 228
>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 135 bits (342), Expect = 6e-38
Identities = 82/293 (27%), Positives = 127/293 (43%), Gaps = 47/293 (16%)
Query: 44 ERPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
ER G + + +NRP+ NAL+ E+ + D E ++ F AG DL
Sbjct: 9 ERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDL 68
Query: 103 KHRLTLNEDQI--RSFVS-TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
K + + F T R+ + P++A ++G A GGG E+ALACD+ VAA
Sbjct: 69 KEQAAGGKRGWPESGFGGLTSRFDLDK------PIIAAVNGVAMGGGFELALACDLIVAA 122
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
N L E ++ + AGG RLPR +G+ A +I TGR V + E +G VN + P
Sbjct: 123 ENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPA 182
Query: 220 NPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKG 279
A+ R A+DI P+++R +K+++ +G
Sbjct: 183 GE----LLAAAERWADDILACSPLSIRASKQAV------------------------YRG 214
Query: 280 GESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E + + Q Y +E +QD +EG K+F K P +KG
Sbjct: 215 LEV--SLEEAITAQRDYPAVE-------ARRASQDYIEGPKAFAEKRPPRWKG 258
>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 135 bits (341), Expect = 8e-38
Identities = 76/206 (36%), Positives = 110/206 (53%), Gaps = 10/206 (4%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R GI L +NRP+ NALN L++ +L ++AI DE VR V+L F AGAD+ H
Sbjct: 10 RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADI-H 68
Query: 105 RLTLN-----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
+ + + +R FV + MT +LE+ P PV+A ++G A+GGG E+ A + +A+
Sbjct: 69 EFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIAS 128
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
E +L + P GGTQRLPR+ G A EL+ TG + A IGLVN + P
Sbjct: 129 ERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVP- 187
Query: 220 NPNQNAAYLASLRIAEDIAHNGPIAV 245
A+ +A I + P+AV
Sbjct: 188 ---HEELLPAARALARRIIRHSPVAV 210
>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 130 bits (329), Expect = 5e-36
Identities = 78/214 (36%), Positives = 114/214 (53%), Gaps = 17/214 (7%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
R ++ + +NRP+ARNA+NA + + + A++ + D ++ +L FCAG DLK
Sbjct: 9 RRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTG-AGGTFCAGMDLK 67
Query: 104 HRLTLNEDQI--RSFVSTLRYMTCQLESIPV--PVLAVLDGSAYGGGLEMALACDIRVAA 159
I R F L P P++A ++G A GG E+ALACD+ VAA
Sbjct: 68 AFARGERPSIPGRGF--------GGLTERPPRKPLIAAVEGYALAGGFELALACDLIVAA 119
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
+ + GL E K ++ GG RLPR + +A EL TG ++ + A +GLVN LT
Sbjct: 120 RDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTE- 178
Query: 220 NPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSID 253
P Q A A+L +AE IA NGP+AV +KR +
Sbjct: 179 -PGQ--ALDAALELAERIAANGPLAVAASKRIVV 209
>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional.
Length = 261
Score = 128 bits (324), Expect = 3e-35
Identities = 70/299 (23%), Positives = 130/299 (43%), Gaps = 42/299 (14%)
Query: 36 QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLV-KD 94
Q + + + + N P RNAL+ L+++++ A+ + E+R V+LR+
Sbjct: 4 QYVNVVTINKIATIT--FNNPAKRNALSKVLIDDLMQALSDLN-RPEIRVVILRAPSGSK 60
Query: 95 VFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD 154
V+ AG D+ + D + S+ LR + ++ P PV+A+++GS +GG E+ ++CD
Sbjct: 61 VWSAGHDIHELPSGGRDPL-SYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCD 119
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
+ +AAS + L + G G + KE+ +T + + A ++G++N
Sbjct: 120 LIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILN 179
Query: 215 TLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDG 274
+ ++ ++A I+ P+A+ + K Q R H D
Sbjct: 180 HVVEVEELEDFTL----QMAHHISEKAPLAIAVIKE---------QLRVLGEAHPMNPD- 225
Query: 275 QGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333
EF+ R G+ YD ++D EG+ +FL K KPV+ G
Sbjct: 226 ----------------EFE-RIQGL--RRAVYD----SEDYQEGMNAFLEKRKPVFVGH 261
>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 708
Score = 132 bits (334), Expect = 3e-34
Identities = 56/163 (34%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL-NEDQIRSFVS 118
N L A E++ ++ +R D+E++ V+ S D F AGAD+ + +
Sbjct: 29 NTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALAR 88
Query: 119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETKLAIIPG 176
+ + ++E++P+PV+A + G+ GGGLE+ALAC RV + +GL E +L ++PG
Sbjct: 89 QGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPG 148
Query: 177 AGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
+GGTQRLPR++G+ A ++I TG+ + + +A +GLV+ + P
Sbjct: 149 SGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPH 191
>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Activities include: enoyl-CoA hydratase (EC 4.2.1.17),
dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8),
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadB. This model excludes the
FadJ family represented by SP:P77399 [Fatty acid and
phospholipid metabolism, Degradation].
Length = 714
Score = 129 bits (327), Expect = 2e-33
Identities = 66/196 (33%), Positives = 105/196 (53%), Gaps = 7/196 (3%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI EL + P + N + + + A++AI+ ++ V+L S KD F GAD+ L
Sbjct: 16 GIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTS-GKDAFIVGADITEFL 74
Query: 107 TL---NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
L + ++ ++ + +LE +PVP +A ++G A GGG E LA D R+A +
Sbjct: 75 GLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAK 134
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
+GL ETKL I+PG GGT RLPR++G A E I +G+ + +A +G V+ + +
Sbjct: 135 IGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTADKLG 194
Query: 224 NAAYLASLR--IAEDI 237
AA L L+ I +
Sbjct: 195 AAA-LQLLKDAINGKL 209
>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional.
Length = 263
Score = 121 bits (306), Expect = 1e-32
Identities = 79/292 (27%), Positives = 132/292 (45%), Gaps = 43/292 (14%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
+R + + MNRP+ARNAL+ ++ ++ A + + D ++R +L FCAG DLK
Sbjct: 11 QRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTG-AGGAFCAGMDLK 69
Query: 104 HRLTLNE-DQIRSFVSTLRYMTCQLE--SIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
D + + L+ + P++A ++G A GG E+ DIRVA
Sbjct: 70 AATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGE 129
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQN 220
+ + G+ E K ++ P G RL R + +A +L+ TGR + + EAK IGL+ + P
Sbjct: 130 SAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVP-- 187
Query: 221 PNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280
A +L +AE I NGP+AV+ R+I R+ +G
Sbjct: 188 --DGQALDKALELAELINANGPLAVQAILRTI-------------------RETEGMHEN 226
Query: 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E+ + + G+ V ++D EG ++F K P ++G
Sbjct: 227 EAFKIDTKI--------GIP--------VFLSEDAKEGPRAFAEKRAPNFQG 262
>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional.
Length = 269
Score = 121 bits (306), Expect = 2e-32
Identities = 79/291 (27%), Positives = 125/291 (42%), Gaps = 47/291 (16%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH-- 104
G+ + N P NA++ + E + A+ A D+ +R V+L + F +GAD+
Sbjct: 20 GLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFE 79
Query: 105 RLTLNEDQIRSF--VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ + + ++ L P +A + G GGG+ +ALACDIR+AA +
Sbjct: 80 ESRSDAEAVAAYEQAVEAAQAA--LADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDS 137
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
R G+ +L + G G + L +VG AK+L YT R D+ EA IGLV+ +T
Sbjct: 138 RFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTA---- 193
Query: 223 QNAAYLASLR-IAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281
+L A IA N P+ +R AKR+I + RD + +
Sbjct: 194 -ADDLETALADYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAA-------- 244
Query: 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
C+D ++D EG +F+ K KPV+KG
Sbjct: 245 -----------------------CFD----SEDYREGRAAFMEKRKPVFKG 268
>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 121 bits (305), Expect = 2e-32
Identities = 73/216 (33%), Positives = 104/216 (48%), Gaps = 19/216 (8%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL-- 102
R + + +NRP RNA N T++ E+ A A+ D+ VR V+L K FCAGADL
Sbjct: 11 RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGK-AFCAGADLNW 69
Query: 103 -KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
K ++D+ R+ L M + P PV+A + G AY GG+ + ACDI VAA +
Sbjct: 70 MKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADH 129
Query: 162 VRMGLVETKLAIIPGAGGTQRLP---RIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218
L E +L +IP P R +G A+ T D+ EA +GLV+ + P
Sbjct: 130 AVFCLSEVRLGLIP----ATISPYVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVP 185
Query: 219 QNPNQNAAYL-ASL-RIAEDIAHNGPIAVRMAKRSI 252
A L A + + + N P AVR KR +
Sbjct: 186 ------AEALDAKVDELLAALVANSPQAVRAGKRLV 215
>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional.
Length = 296
Score = 121 bits (305), Expect = 3e-32
Identities = 84/303 (27%), Positives = 133/303 (43%), Gaps = 55/303 (18%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL---- 102
GI + +NRP NA T+ E++ A +A D+ VR V++ + FCAGADL
Sbjct: 13 GIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGR-AFCAGADLSAGG 71
Query: 103 ---------KHRLTLNEDQIRSFVSTLR----YMTCQLESIPVPVLAVLDGSAYGGGLEM 149
ED+ +R +T ++ PV+A ++G A G G M
Sbjct: 72 NTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATM 131
Query: 150 ALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKS 209
LA DIR+A++ R G V + I+P A + LPR+VG+ A E +Y+GR+ D+ EA
Sbjct: 132 TLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEALD 191
Query: 210 IGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHS 269
GLV ++ P + AA + IA++ + P++V + ++ + R H
Sbjct: 192 GGLVRSVHPPDELLPAARALAREIADNTS---PVSVALTRQMM---WRMAGADHPMEAH- 244
Query: 270 PGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPV 329
R +S+ + G R+ D EG+ SFL K V
Sbjct: 245 --RV-------DSR--------------AIYSRG-------RSGDGKEGVSSFLEKRPAV 274
Query: 330 YKG 332
+ G
Sbjct: 275 FPG 277
>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional.
Length = 256
Score = 118 bits (299), Expect = 1e-31
Identities = 66/205 (32%), Positives = 110/205 (53%), Gaps = 5/205 (2%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
G+ L + + N L ++ + A+ + D +VR ++LR + F GAD+K
Sbjct: 15 RGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEM 74
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
TL++ +F+S LR + + PVPV+A + G GGGLE+A ACD+R+AA + + G
Sbjct: 75 ATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFG 134
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
+ E ++ IP LPR++G + L+ TG +D+ +A + GLV+ + P +
Sbjct: 135 MPEVRVG-IPSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVP--LAELD 191
Query: 226 AYLASLRIAEDIAHNGPIAVRMAKR 250
A + R+A +A GP A+R KR
Sbjct: 192 AAVE--RLAASLAGCGPQALRQQKR 214
>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 118 bits (298), Expect = 2e-31
Identities = 68/201 (33%), Positives = 101/201 (50%), Gaps = 13/201 (6%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK-HR 105
G+ + +NRP RNALN L+ + A + E VR V+L D FCAG DL R
Sbjct: 11 GVATIGLNRPAKRNALNDGLIAALRAAFARL--PEGVRAVVLHG-EGDHFCAGLDLSELR 67
Query: 106 LTLNEDQIRSFVSTLRYMTC--QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
D + R+ +++ VPV+A L G+ GGGLE+A A IRVA +
Sbjct: 68 ---ERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTY 124
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
L E + I G GG+ R+PR++G+ +++ TGR+ D+ E + +GL L P
Sbjct: 125 FALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVP----A 180
Query: 224 NAAYLASLRIAEDIAHNGPIA 244
A ++ +A IA N P+
Sbjct: 181 GEALDKAMELARRIAQNAPLT 201
>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 115 bits (290), Expect = 3e-30
Identities = 69/206 (33%), Positives = 102/206 (49%), Gaps = 13/206 (6%)
Query: 51 LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE 110
L +N P A N A ++ + V + D++V +++ + F AGADL ++
Sbjct: 16 LTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDK 74
Query: 111 DQIRSFVSTLRYMTCQLESI----PVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
R R E++ V +A ++G A GGGLE ALACDIR+A +M L
Sbjct: 75 AVAREM---ARRFGEAFEALSAFRGV-SIAAINGYAMGGGLECALACDIRIAEEQAQMAL 130
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
E + ++P AGGTQ LP +VG AK +I G VD+ A IGLV + + + AA
Sbjct: 131 PEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKGEAREAA 190
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSI 252
L +A+ +A+ P AV K I
Sbjct: 191 ----LALAQKVANQSPSAVAACKTLI 212
>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated.
Length = 222
Score = 113 bits (284), Expect = 6e-30
Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 6/224 (2%)
Query: 32 RKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL 91
+ ++ + + G+ L ++RP NAL + EI+ A + ++V V+L
Sbjct: 2 NEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYG- 59
Query: 92 VKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMAL 151
++F AG D+ TL+ + + + + +IP P +A + G A G GL +AL
Sbjct: 60 GHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLAL 119
Query: 152 ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIG 211
A D RV+ NV+ G E + P G RL R G AKEL+++GR D+ EA ++G
Sbjct: 120 AADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALG 179
Query: 212 LVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGP 255
L++ + + Y A+ A P A+ AK I
Sbjct: 180 LIDEMVA----PDDVYDAAAAWARRFLDGPPHALAAAKAGISDV 219
>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional.
Length = 261
Score = 114 bits (287), Expect = 7e-30
Identities = 81/287 (28%), Positives = 130/287 (45%), Gaps = 39/287 (13%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
I+E+ ++RP+A NA++A + R D E+R ++ + F AG DLK
Sbjct: 12 SILEITLDRPKA-NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLK-AA 69
Query: 107 TLNEDQIRSF-VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
E F +T ++ + PV+A ++G A+GGG E+ALA D V A N
Sbjct: 70 AEGEAPDADFGPGGFAGLT-EIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFA 128
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
L E KL I+P +GG RLP+ + +A E++ TGR +D+ EA G+VN + PQ +
Sbjct: 129 LPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDR 188
Query: 226 AYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGT 285
A +A+ + ++ P+A+ K R T + + R G
Sbjct: 189 AR----ELAQQLVNSAPLAIAALKEIY----RETSEMPVEEAYRYIRSGVLKH------- 233
Query: 286 ENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
Y V+ ++D +EG ++F K PV+KG
Sbjct: 234 --------------------YPSVLHSEDALEGPRAFAEKRDPVWKG 260
>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid
synthetase). This model represents an enzyme,
naphthoate synthase (dihydroxynaphthoic acid
synthetase), which is involved in the fifth step of the
menaquinone biosynthesis pathway. Together with
o-succinylbenzoate-CoA ligase (menE: TIGR01923), this
enzyme takes 2-succinylbenzoate and converts it into
1,4-di-hydroxy-2-naphthoate. Included above the trusted
cutoff are two enzymes from Arabadopsis thaliana and one
from Staphylococcus aureus which are identified as
putative enoyl-CoA hydratase/isomerases. These enzymes
group with the naphthoate synthases when building a tree
and when doing BLAST searches [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 259
Score = 113 bits (284), Expect = 1e-29
Identities = 79/242 (32%), Positives = 120/242 (49%), Gaps = 18/242 (7%)
Query: 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK 93
I Y S + GI ++ +NRPQ RNA V+EI+ A++ R D ++ V+L
Sbjct: 1 FEDIRYEKSTD--GIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGD 58
Query: 94 DVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ--LESIPVPVLAVLDGSAYGGGLEMAL 151
FC+G D K R S V L + Q + + P PV+A+++G A GGG + +
Sbjct: 59 KAFCSGGDQKVR-GDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHM 117
Query: 152 ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIG 211
CD+ +AA N R G K+ G G+ + RIVG A+E+ + R D+ +A +G
Sbjct: 118 MCDLTIAAENARFGQTGPKVGSFDGGYGSSYMARIVGQKKAREIWFLCRQYDAKQALDMG 177
Query: 212 LVNTLTPQNPNQNAAYL--ASLRIAEDIAHNGPIAVRMAKRSI----DGPGRGTQYRDGQ 265
LVNT+ P A L ++R +I P+A+RM K ++ DG G Q G
Sbjct: 178 LVNTVVP------LADLEKETVRWCREILQKSPMAIRMLKAALNADCDGQ-AGLQELAGN 230
Query: 266 ST 267
+T
Sbjct: 231 AT 232
>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 113 bits (284), Expect = 2e-29
Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 5/176 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL---K 103
G+ L +NRP+ NAL+A ++ E+ TA + D VR V+L K FCAG DL +
Sbjct: 14 GVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKS-FCAGGDLGWMR 72
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
++T + L M L +P P++ + G A+GGG+ + CD+ +A S R
Sbjct: 73 AQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGAR 132
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
GL ET+L +IP + R+ G A+ + + RL D+ EA +GL++ + P
Sbjct: 133 FGLTETRLGLIPATISPYVVARM-GEANARRVFMSARLFDAEEAVRLGLLSRVVPA 187
>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 112 bits (282), Expect = 4e-29
Identities = 65/218 (29%), Positives = 103/218 (47%), Gaps = 22/218 (10%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R GI + NRP ARNA+ + E + EAI D +R V+LR F AG D+
Sbjct: 15 RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIA- 73
Query: 105 RLTLNEDQIRSFVS---TLRY------MTCQLESIPVPVLAVLDGSAYGGGLEMALACDI 155
Q R+F + + Y + LE + VP +A + G+ GGG +A ACD+
Sbjct: 74 -------QFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDL 126
Query: 156 RVAASNVRMGL-VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
R+A + R G + L RL ++G K++++T RL+++ EA + GLVN
Sbjct: 127 RIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVN 186
Query: 215 TLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSI 252
+ A +AE +A + P+ +R K ++
Sbjct: 187 EVVEDAALDARA----DALAELLAAHAPLTLRATKEAL 220
>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme
metabolism].
Length = 282
Score = 112 bits (283), Expect = 4e-29
Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 10/222 (4%)
Query: 32 RKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL 91
I Y S + GI ++ +NRP+ RNA V+E++ A R D V +LL
Sbjct: 15 EGYEDITYEKSVD--GIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGN 72
Query: 92 V--KDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ--LESIPVPVLAVLDGSAYGGGL 147
FC+G D K R + L + Q + ++P PV+A++ G A GGG
Sbjct: 73 GDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGH 132
Query: 148 EMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEA 207
+ + CD+ +AA N G K+ G G+ L RIVG A+E+ + R D+ EA
Sbjct: 133 VLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEA 192
Query: 208 KSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAK 249
+GLVNT+ P + ++ A ++ P A+RM K
Sbjct: 193 LDMGLVNTVVPHADLEKET----VQWAREMLAKSPTALRMLK 230
>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Plays a minor role in aerobic beta-oxidation of fatty
acids. FadJI complex is necessary for anaerobic growth
on short-chain acids with nitrate as an electron
acceptor. Activities include: enoyl-CoA hydratase (EC
4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadJ (aka YfcX). This model
excludes the FadB of TIGR02437 equivalog model [Fatty
acid and phospholipid metabolism, Degradation].
Length = 699
Score = 117 bits (294), Expect = 5e-29
Identities = 60/178 (33%), Positives = 107/178 (60%), Gaps = 4/178 (2%)
Query: 47 GIVELCMNRPQAR-NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
GI L ++ P + N L A +++ + ++ D+ +R ++L S D F AGAD+
Sbjct: 10 GIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISML 69
Query: 106 LTL-NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--V 162
+ ++ + + +LE++P+PV+A + G+ GGGLE+ALAC RV + +
Sbjct: 70 AACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKT 129
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQN 220
+GL E +L ++PG+GGTQRLPR++G+ A ++I TG+ + + +A +GLV+ + PQ+
Sbjct: 130 VLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQS 187
>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 109 bits (274), Expect = 6e-28
Identities = 62/217 (28%), Positives = 104/217 (47%), Gaps = 16/217 (7%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G+ + +NRP NA + E+ A++ D VR ++L + FCAGAD+
Sbjct: 15 GVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRG-FCAGADMGELQ 73
Query: 107 TLNEDQIRSFVSTLRYMTCQ----------LESIPVPVLAVLDGSAYGGGLEMALACDIR 156
T++ R ++ + L ++ PV+A ++G+ G GL AL CD+R
Sbjct: 74 TIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVR 133
Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTL 216
AA + + +I G + LPR+VG A +L+ + R + EA +GLVN +
Sbjct: 134 FAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRV 193
Query: 217 TPQNPNQNAAYLASLRIAEDIAHN-GPIAVRMAKRSI 252
P P++ +L AED+A N P ++ + KR +
Sbjct: 194 VP--PDELME--RTLAYAEDLARNVSPASMAVIKRQL 226
>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated.
Length = 266
Score = 108 bits (272), Expect = 1e-27
Identities = 71/220 (32%), Positives = 103/220 (46%), Gaps = 33/220 (15%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R G+ L +NRPQA NAL+ ++ + A++AI D VR V+L + K FCAG DLK
Sbjct: 18 RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGK-AFCAGHDLK- 75
Query: 105 RLTLNEDQIRSFVSTL-----RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
+ ++ L R M + ++P PV+A + G A G ++ +CD+ VAA
Sbjct: 76 EMRAARG--LAYFRALFARCSRVMQ-AIVALPQPVIARVHGIATAAGCQLVASCDLAVAA 132
Query: 160 -------SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGL 212
V +GL P L R V A E++ TG +D+ A+ GL
Sbjct: 133 DTARFAVPGVNIGL----FCSTPMVA----LSRNVPRKQAMEMLLTGEFIDAATAREWGL 184
Query: 213 VNTLTPQNPNQNAAYLAS--LRIAEDIAHNGPIAVRMAKR 250
VN + P A L + R+A IA P AVR+ K
Sbjct: 185 VNRVVP------ADALDAAVARLAAVIAAKSPAAVRIGKE 218
>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 106 bits (266), Expect = 6e-27
Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 12/214 (5%)
Query: 51 LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN- 109
L ++ P ARNAL+ + + A+ D +R V+L FCAG +L RL N
Sbjct: 16 LTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTG-AGGFFCAGGNLN-RLLENR 73
Query: 110 ----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
Q S + L + + P PV+A ++G+A G G +ALACD+ VAA + +
Sbjct: 74 AKPPSVQAAS-IDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFV 132
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
+ K+ + P GG+ L R + LA EL+ G+ + + ++G+VN L P Q
Sbjct: 133 MAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAE--PGQ-- 188
Query: 226 AYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGT 259
A +L +A+ +A P A+ K I T
Sbjct: 189 ALAEALALADQLAAGSPNALARIKSLIADAPEAT 222
>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.
Length = 273
Score = 104 bits (262), Expect = 3e-26
Identities = 78/259 (30%), Positives = 125/259 (48%), Gaps = 29/259 (11%)
Query: 23 YSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEE 82
Y+ ++ ++ I+Y ++ GI ++ +NRP+ RNA V+E++ A R D+
Sbjct: 1 YAPVEWQDCKEYEDILYKSAD---GIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDN 57
Query: 83 VRCVLLRSLVKDVFCAGADLKHRLT---LNEDQI-RSFVSTLRYMTCQLESIPVPVLAVL 138
+ ++L FC+G D K R +++D + R V L+ + + P PV+A++
Sbjct: 58 IGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQR---LIRTCPKPVIAMV 114
Query: 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYT 198
G A GGG + L CD+ +AA N G K+ G G L RIVG A+E+ +
Sbjct: 115 AGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFL 174
Query: 199 GRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASL-----RIAEDIAHNGPIAVRMAKRSI- 252
R D+ EA +GLVNT+ P LA L R ++ N P+A+R K ++
Sbjct: 175 CRQYDAQEALDMGLVNTVVP---------LADLEKETVRWCREMLQNSPMALRCLKAALN 225
Query: 253 ---DGPGRGTQYRDGQSTH 268
DG G Q G +T
Sbjct: 226 ADCDGQ-AGLQELAGNATM 243
>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional.
Length = 243
Score = 103 bits (260), Expect = 3e-26
Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 15/205 (7%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
++ + + RP+ RNALNA L EE+ AV DE R ++L VFCAGADL
Sbjct: 8 GQVLTIELQRPERRNALNAELCEELREAVRKA-VDESARAIVLTG-QGTVFCAGADLSGD 65
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
+ ++ F L M +++ PVPV+A ++G A G GL++A+ACD+RV A
Sbjct: 66 VYADD-----FPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQ 120
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
K I +RL +VG A+ ++ + + +A + G+ N + Q
Sbjct: 121 FPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGTLADAQ-- 178
Query: 226 AYLASLRIAEDIAHNGPIAVRMAKR 250
A+ A +IA P+A++ AKR
Sbjct: 179 AW------AAEIAGLAPLALQHAKR 197
>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA
hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase.
Length = 275
Score = 104 bits (260), Expect = 5e-26
Identities = 72/223 (32%), Positives = 106/223 (47%), Gaps = 16/223 (7%)
Query: 38 IYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFC 97
I SP + L +NRP RNAL+ E A+ ++ + V ++L S D FC
Sbjct: 9 IIQKSPNSS-VFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIIL-SGAGDHFC 66
Query: 98 AGADLKHRLTLNED-----------QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGG 146
+G DLK +++E ++R + L+ +E PV+A + G+ GGG
Sbjct: 67 SGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGG 126
Query: 147 LEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTE 206
+++ ACDIR + + + E LAI G QRLP IVG A EL TGR +E
Sbjct: 127 VDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSE 186
Query: 207 AKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAK 249
AK +GLV+ + + + IAE IA P+AV K
Sbjct: 187 AKELGLVSRVFGSKEDLDEGVRL---IAEGIAAKSPLAVTGTK 226
>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase;
Validated.
Length = 249
Score = 101 bits (255), Expect = 2e-25
Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 8/193 (4%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
GI ++ M +NA + L +++ A + I D + V+L + F G +
Sbjct: 13 EGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGY-PNYFATGGTQEGL 71
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
L+L + +F Y + L P+PV+A + G A GGGL + L DI V +
Sbjct: 72 LSL-QTGKGTFTEANLY-SLALN-CPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYT 128
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
K PG G T LP +G+ L +E++ T R E K G+ + P+
Sbjct: 129 ANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEK 188
Query: 226 AYLASLRIAEDIA 238
A L +A +A
Sbjct: 189 A----LELARSLA 197
>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase.
Length = 265
Score = 100 bits (252), Expect = 6e-25
Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 19/219 (8%)
Query: 42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFC 97
R GI + +NRP+A NAL ++ E+ A + + D+ V+ ++L R+ FC
Sbjct: 14 PKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRA-----FC 68
Query: 98 AGADLKHRLTLNEDQIRSFVSTLRYMT-CQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
+G DL T E+ + V + Q+E P++ ++G A G E+ALACDI
Sbjct: 69 SGVDL----TAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDIL 124
Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTL 216
VA+ + K I P G +Q+L RI+G A+E+ T + + A+ GLVN +
Sbjct: 125 VASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHV 184
Query: 217 TPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSI-DG 254
++ A +AE I N V K I DG
Sbjct: 185 VEESELLKKA----REVAEAIIKNNQGMVLRYKSVINDG 219
>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha
subunit, mitochondrial. Members represent alpha subunit
of mitochondrial multifunctional fatty acid degradation
enzyme complex. Subunit activities include: enoyl-CoA
hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA
dehydrogenase (EC 1.1.1.35). Some characterization in
human , pig , and rat. The beta subunit has activity:
acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Length = 737
Score = 104 bits (262), Expect = 7e-25
Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 18/226 (7%)
Query: 22 NYSTSVSKEGRKLTQIIYHNSPERPGIVELC-MNRPQAR-NALNATLVEEILTAVEAIRG 79
+STS + R H E G V + ++ P ++ N L+ L E + +
Sbjct: 2 LFSTSAALMART------HRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWT 55
Query: 80 DEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTL----RYMTCQLESIPVPVL 135
+E ++ +L S F AGAD++ + + V+ L + M ++E P++
Sbjct: 56 NEAIKSAVLISGKPGSFVAGADIQ---MIAACKTAQEVTQLSQEGQEMFERIEKSQKPIV 112
Query: 136 AVLDGSAYGGGLEMALACDIRVAA--SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAK 193
A + GS GGGLE+ALAC R+A +GL E L ++PGAGGTQRLP++ G+P A
Sbjct: 113 AAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAAL 172
Query: 194 ELIYTGRLVDSTEAKSIGLVNTLT-PQNPNQNAAYLASLRIAEDIA 238
+++ TG+ + + AK +G+V+ L P P A ++ E++A
Sbjct: 173 DMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVA 218
>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 99 bits (250), Expect = 1e-24
Identities = 67/203 (33%), Positives = 95/203 (46%), Gaps = 39/203 (19%)
Query: 53 MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK-------HR 105
+NRP+ RNA++ + A A D+ +L FCAGADLK +R
Sbjct: 18 LNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWG-AGGTFCAGADLKAVGTGRGNR 76
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
L + D M + PV+A + G A GGLE+AL CD+RVA + G
Sbjct: 77 LHPSGDGP---------MGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFG 127
Query: 166 ---------LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTL 216
L++ GGT RLPR++G A +LI TGR VD+ EA +IGL N +
Sbjct: 128 VFCRRWGVPLID---------GGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRV 178
Query: 217 TPQNPNQNAAYLASLRIAEDIAH 239
P + A A+ +A ++A
Sbjct: 179 VP----KGQARAAAEELAAELAA 197
>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase.
Length = 327
Score = 100 bits (251), Expect = 3e-24
Identities = 69/242 (28%), Positives = 111/242 (45%), Gaps = 22/242 (9%)
Query: 21 PNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGD 80
+ G++ T IIY + GI ++ +NRP+ RNA V+E+ A R D
Sbjct: 51 VVWRKVPDGSGKEFTDIIYEKAVGE-GIAKITINRPERRNAFRPRTVKELQRAFNDARDD 109
Query: 81 EEVRCVLLRSLVKDVFCAGADL----KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLA 136
V ++L FC+G D K +D R V L+ Q+ +P PV+A
Sbjct: 110 SSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQ---IQIRRLPKPVIA 166
Query: 137 VLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELI 196
++ G A GGG + + CD+ +AA N G K+ G+ + R+VG A+E+
Sbjct: 167 MVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMW 226
Query: 197 YTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASL-----RIAEDIAHNGPIAVRMAKRS 251
+ R ++EA +GLVNT+ P L L + +I N P A+R+ K +
Sbjct: 227 FLARFYTASEALKMGLVNTVVP---------LDELEGETVKWCREILRNSPTAIRVLKSA 277
Query: 252 ID 253
++
Sbjct: 278 LN 279
>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional.
Length = 288
Score = 99.3 bits (248), Expect = 4e-24
Identities = 68/239 (28%), Positives = 101/239 (42%), Gaps = 47/239 (19%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK- 103
I + +NRP+ARNA N ++ E+ A D+ VR ++L K F AG DL
Sbjct: 11 AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKH-FSAGHDLGS 69
Query: 104 ------------HRLTLNEDQIRSFVSTLRY---------MTCQLESIPVPVLAVLDGSA 142
TL D RY M + +P P +A + G+
Sbjct: 70 GTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGAC 129
Query: 143 YGGGLEMALACDIRVAASN-------VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKEL 195
GGL +A CD+ VA+ + VRMG+ + P G PR AKEL
Sbjct: 130 IAGGLMLAWVCDLIVASDDAFFSDPVVRMGIPGVEYFAHPWELG----PRK-----AKEL 180
Query: 196 IYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLAS--LRIAEDIAHNGPIAVRMAKRSI 252
++TG + + EA +G+VN + P L + L +A IA P +R+ KR++
Sbjct: 181 LFTGDRLTADEAHRLGMVNRVVP------RDELEAETLELARRIAAMPPFGLRLTKRAV 233
>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 98.2 bits (245), Expect = 6e-24
Identities = 79/282 (28%), Positives = 124/282 (43%), Gaps = 46/282 (16%)
Query: 53 MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED- 111
++ P NAL+ L +E++ + I +VR V+L K VFCAGADLK R + +
Sbjct: 19 LDNPPV-NALSRELRDELIAVFDEISERPDVRVVVLTGAGK-VFCAGADLKGRPDVIKGP 76
Query: 112 -QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK 170
+R+ R + PV+A ++G A G GL + +CDI VA+ N GL E
Sbjct: 77 GDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEID 136
Query: 171 LAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLAS 230
+ + AGG + R+ G L + ++ TG V + E G++ P A
Sbjct: 137 VGL---AGGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEA---- 189
Query: 231 LRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNR 290
+ IA +IA P+A R+AK +++ + RDG
Sbjct: 190 MEIAREIASKSPLATRLAKDALN-----------TIENMSLRDGY--------------- 223
Query: 291 EFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
RY + I + +T+D E ++FL K PV+KG
Sbjct: 224 ----RYE----QDITAK-LAKTEDAKEAQRAFLEKRPPVFKG 256
>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 97.7 bits (244), Expect = 9e-24
Identities = 62/217 (28%), Positives = 98/217 (45%), Gaps = 21/217 (9%)
Query: 44 ERPGIVELC-MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
ER G V L ++RP RNA ++ +++++ A+ D+E+R +L + + F AG DL
Sbjct: 4 ERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFA-HGEHFTAGLDL 62
Query: 103 --------KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD 154
E I + + R ++ P++ + G G+E+ LA D
Sbjct: 63 ADVAPKLAAGGFPFPEGGIDPWGTVGRRLS-------KPLVVAVQGYCLTLGIELMLAAD 115
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
I VAA N R +E + I+P G T R P+ G A + TG D+ EA +GLV
Sbjct: 116 IVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQ 175
Query: 215 TLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRS 251
+ P A + +AE IA P+ V+ S
Sbjct: 176 EVVPPGEQLERA----IELAERIARAAPLGVQATLAS 208
>gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated.
Length = 287
Score = 98.1 bits (245), Expect = 1e-23
Identities = 66/237 (27%), Positives = 101/237 (42%), Gaps = 24/237 (10%)
Query: 30 EGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIR-----GDEEVR 84
E +L+Q+ + ER ++ + M R Q R N L+++I+ AIR V
Sbjct: 10 EAGELSQLRVYYEEER-NVMWMYM-RAQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVD 67
Query: 85 CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESI---------PVPVL 135
+L S V VF G DL L R + L Y ++ + +
Sbjct: 68 FWVLASDVPGVFNLGGDLALFAELIRAGDRD--ALLAYARACVDGVHAFHRGFGAGAISI 125
Query: 136 AVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKEL 195
A++ G A GGG E AL+ +A +MG E + PG G L R VG LA+EL
Sbjct: 126 ALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEEL 185
Query: 196 IYTGRLVDSTEAKSIGLVNTLTPQNPNQNA--AYLASLRIAEDIAHNGPIAVRMAKR 250
I +G+L + E +GLV+ L + A ++ + NG A+ A+R
Sbjct: 186 ILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSK----RKLNGWRAMLRARR 238
>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 95.9 bits (239), Expect = 3e-23
Identities = 64/211 (30%), Positives = 93/211 (44%), Gaps = 17/211 (8%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G+ + +N P RNA+ A + ++ AV A D +V +++ K FCAGADL
Sbjct: 12 GVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGK-AFCAGADLT--- 67
Query: 107 TLNEDQIRSFVSTLR--YMT-CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
L R LR Y + S P+P +A ++G+A G GL +ALA D+R+A
Sbjct: 68 ALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKAL 127
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLT--PQNP 221
KL + PG G T L R VG +A+ + G D+ A GL + P
Sbjct: 128 FDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVADDPVA- 186
Query: 222 NQNAAYLASLRIAEDIAHNGPIAVRMAKRSI 252
A+L +A A V K S+
Sbjct: 187 -------AALELAAGPAAAPRELVLATKASM 210
>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 94.7 bits (236), Expect = 1e-22
Identities = 50/180 (27%), Positives = 97/180 (53%), Gaps = 3/180 (1%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + +NRP+A NAL+ +++E+L A++ + + V+LR + F AG D+K L
Sbjct: 15 RVATIMLNRPEALNALDEPMLKELLQALKEVA-ESSAHIVVLRGNGR-GFSAGGDIKMML 72
Query: 107 TLN-EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
+ N E + ++T+ + L ++P ++ + G A G GL +AL D +A + ++
Sbjct: 73 SSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLA 132
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
+ + +IP GG L + VG AK++I+ G+ + +TEA +GL++ + + A
Sbjct: 133 MNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVIGGDFQTAA 192
>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 94.4 bits (235), Expect = 2e-22
Identities = 65/191 (34%), Positives = 87/191 (45%), Gaps = 5/191 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G+ L ++ P RNAL+A LV ++ + A D VR V+L + FCAGADL
Sbjct: 15 GVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVL-THTGGTFCAGADLSEAG 73
Query: 107 TLNEDQIRSFVSTLRYMTCQLESI---PVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
D + V+ R MT L +I P PV+A +DG GG + ACDI VA
Sbjct: 74 GGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPEST 133
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
L E ++ + P LPR+ A+ + TG + EA IGLV
Sbjct: 134 FALTEARIGVAPAIISLTLLPRLSPRAAARYYL-TGEKFGAAEAARIGLVTAAADDVDAA 192
Query: 224 NAAYLASLRIA 234
AA LA LR
Sbjct: 193 VAALLADLRRG 203
>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional.
Length = 276
Score = 92.2 bits (229), Expect = 1e-21
Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 21/204 (10%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
RP I + +NRP+ N++ ++ + A+ + D VR V+L + F +GAD K
Sbjct: 17 RPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRG-FSSGADHKS 75
Query: 105 RLTL-NEDQIRSFVSTLRYM------TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
+ + + + LR M L + PV+A ++G A GGGL +ALA DIRV
Sbjct: 76 AGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRV 135
Query: 158 AASN-------VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSI 210
A+S+ + GL ++L G + LPR +G A E++ TGR VD+ EA+ I
Sbjct: 136 ASSSAYFRAAGINNGLTASEL------GLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERI 189
Query: 211 GLVNTLTPQNPNQNAAYLASLRIA 234
GLV+ P + Y + R+A
Sbjct: 190 GLVSRQVPDEQLLDTCYAIAARMA 213
>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase;
Validated.
Length = 275
Score = 91.6 bits (228), Expect = 2e-21
Identities = 62/212 (29%), Positives = 97/212 (45%), Gaps = 19/212 (8%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI + +NRP+ RNA++ TL E++ ++A+ D++ ++L D + AG DLK
Sbjct: 17 GIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTG-AGDAWSAGMDLKEYF 75
Query: 107 TLNEDQIRSFVSTLRYMTCQ----LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ Q +R L P +A+++G +GGG +ACD+ +AA
Sbjct: 76 RETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEA 135
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
+ GL E I PG G ++ + VG A I TG +A +GLVN P
Sbjct: 136 QFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVP---- 191
Query: 223 QNAAYLASLR-----IAEDIAHNGPIAVRMAK 249
LA LR +A + P+ +R AK
Sbjct: 192 -----LAQLRARTRELAAKLLEKNPVVLRAAK 218
>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA
hydratase paaB. This family of proteins are found
within apparent operons for the degradation of
phenylacetic acid. These proteins contain the enoyl-CoA
hydratase domain as detected by pfam00378. This activity
is consistent with current hypotheses for the
degradation pathway which involve the ligation of
phenylacetate with coenzyme A (paaF), hydroxylation
(paaGHIJK), ring-opening (paaN) and degradation of the
resulting fatty acid-like compound to a Krebs cycle
intermediate (paaABCDE).
Length = 256
Score = 90.7 bits (225), Expect = 3e-21
Identities = 58/174 (33%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR- 105
G+ L +NRP N+ A + E+ A+E + D+ R ++L + FCAG DL R
Sbjct: 8 GVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRG-FCAGQDLSERN 65
Query: 106 ------LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
L + +R +L ++P+PV+ ++G A G G +ALACDI +AA
Sbjct: 66 PTPGGAPDLGRTIETFYNPLVR----RLRALPLPVVCAVNGVAAGAGANLALACDIVLAA 121
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLV 213
+ R K+ +IP +GGT LPR+VG A L G +D+ A S GL+
Sbjct: 122 ESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLI 175
>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 89.6 bits (223), Expect = 8e-21
Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 22/179 (12%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGADL 102
G+ L +NRP N+ + E+ A++ + D+ R +LL R FCAG DL
Sbjct: 13 GVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRG-----FCAGQDL 66
Query: 103 KHRLTLNEDQ-------IRSFVSTL-RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD 154
R I +F + L R +L ++P+PV+A ++G A G G +ALACD
Sbjct: 67 ADRDVTPGGAMPDLGESIETFYNPLVR----RLRALPLPVIAAVNGVAAGAGANLALACD 122
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLV 213
I +AA + K+ ++P +GGT LPR+VG+ A L G + + +A+ GL+
Sbjct: 123 IVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLI 181
>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 88.5 bits (220), Expect = 2e-20
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 16/213 (7%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
PGI E+ ++ P NAL + + A+ A D + R V+LR+ + F AG D+K
Sbjct: 10 PGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRG-FNAGVDIKE- 66
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESI---PVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ + R ++ VPV+A + G GGG+ + D+ VA+ +
Sbjct: 67 -LQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDA 125
Query: 163 RMGLVETKLAIIPGA-GGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNP 221
GL E + GA G L R+V L + L +T + + E G V + P++
Sbjct: 126 TFGLPE----VDRGALGAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQ 181
Query: 222 NQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDG 254
AA L +A IA +R AK +++G
Sbjct: 182 LDEAA----LEVARKIAAKDTRVIRAAKEALNG 210
>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 84.4 bits (209), Expect = 7e-19
Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
IIY + + L +NRP+ N N + +EIL A+ D VR +L+ + K VF
Sbjct: 4 IIYEVEDD---LATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGK-VF 59
Query: 97 CAGADLKH-RLTLNEDQIRSFV---STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALA 152
G DL + ++ED ++S V + ++ ++ +P PV+ +DG+ G MA+A
Sbjct: 60 SVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVA 119
Query: 153 CDIRVAASNVRM--GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSI 210
D +A++ + V LA P AGG L R +G+ A L TG + + +A
Sbjct: 120 ADFCIASTKTKFIQAFVGVGLA--PDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEY 177
Query: 211 GLV 213
G V
Sbjct: 178 GFV 180
>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase. Members
of this protein family are 2-ketocyclohexanecarboxyl-CoA
hydrolase, a ring-opening enzyme that acts in catabolism
of molecules such as benzoyl-CoA and cyclohexane
carboxylate. It converts -ketocyclohexanecarboxyl-CoA to
pimelyl-CoA. It is not sensitive to oxygen.
Length = 256
Score = 83.8 bits (207), Expect = 9e-19
Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 5/209 (2%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R GI + +NRP NA +E++ A++ D ++ ++L FC G D +
Sbjct: 9 RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGD-QS 67
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
D + + + + +P PV+A + G A GGG + CD+ +A+ +
Sbjct: 68 THDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQF 127
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
G V K+ + GT L R+VG A+E+ Y R + EA ++GLVN + P +Q
Sbjct: 128 GQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPH--DQL 185
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSID 253
A + + ++I P A+ +AKRS +
Sbjct: 186 DAEVQ--KWCDEIVEKSPTAIAIAKRSFN 212
>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional.
Length = 268
Score = 82.0 bits (203), Expect = 5e-18
Identities = 62/220 (28%), Positives = 94/220 (42%), Gaps = 25/220 (11%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
PG++E+ +N P A NA +A + E+ + D +VR VL+R K F AG DL
Sbjct: 19 PPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGK-AFSAGGDLA- 76
Query: 105 RLTLNEDQIRSFVSTLRYMT-----------CQLESIPVPVLAVLDGSAYGGGLEMALAC 153
L E+ F R C P+++ + G A G GL AL
Sbjct: 77 ---LVEEMADDFEVRARVWREARDLVYNVINC-----DKPIVSAIHGPAVGAGLVAALLA 128
Query: 154 DIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLV 213
DI +AA + R+ T+L + G P + G+ AK + V EA+ IGLV
Sbjct: 129 DISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLV 188
Query: 214 NTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSID 253
+ + A L +AE +A A+R K +++
Sbjct: 189 SLAVDDDELLPKA----LEVAERLAAGSQTAIRWTKYALN 224
>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated.
Length = 265
Score = 80.2 bits (198), Expect = 2e-17
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 19/211 (9%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL---K 103
G L ++R NA NA ++ E++ A++ ++ D +R +LLR + F AGADL +
Sbjct: 15 GFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRH-FSAGADLAWMQ 73
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
L+ + L + L + +P LAV+ G+A+GG L + CD+ + A + +
Sbjct: 74 QSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQ 133
Query: 164 MGLVETKLAIIPGAGGTQRLPRIV---GIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQN 220
L E ++ + P P +V G A+ T D A+ +GL+ P
Sbjct: 134 FCLSEVRIGLAPAVIS----PFVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAA 189
Query: 221 P--NQNAAYLASLRIAEDIAHNGPIAVRMAK 249
Q A++A+L N P A+R +K
Sbjct: 190 ELEAQVEAWIANL------LLNSPQALRASK 214
>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated.
Length = 302
Score = 80.1 bits (198), Expect = 4e-17
Identities = 70/240 (29%), Positives = 105/240 (43%), Gaps = 27/240 (11%)
Query: 30 EGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLR 89
G T I YH + + G V + +RP+ RNA V+E+ A++ R +V CVLL
Sbjct: 18 PGFDFTDITYHRAVD-QGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLT 76
Query: 90 S---LVKD---VFCAGADLKHR-----------LTLNEDQIRSFVSTLRYMTCQ--LESI 130
KD FC+G D + R D R+ L + Q + +
Sbjct: 77 GNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARA--GRLHILEVQRLIRFM 134
Query: 131 PVPVLAVLDGSAYGGGLEMALACDIRVA-ASNVRMGLVETKLAIIPGAGGTQRLPRIVGI 189
P V+AV+ G A GGG + + CD+ +A + R + + G G+ L R VG
Sbjct: 135 PKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQ 194
Query: 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAK 249
A+E+ + GR + EA +G VN + P + A L A +I P A+RM K
Sbjct: 195 KFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEA----LEWAREINGKSPTAMRMLK 250
>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional.
Length = 277
Score = 78.1 bits (193), Expect = 2e-16
Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 27/209 (12%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR- 105
G+ + +NRP+ +N L E+ + ++V+ V+L FC+G D+ H
Sbjct: 26 GVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTG-AGGNFCSGGDV-HEI 83
Query: 106 ----LTLNEDQIRSFVSTLRYMTCQL----ESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
++ ++ +F MT L + P P++A +DG G G +A+A D+R+
Sbjct: 84 IGPLTKMDMPELLAFTR----MTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRL 139
Query: 158 AASNVRMGLVETK--LAIIPGA--GGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLV 213
+ + + T+ LA GA G LPRI+G A EL+YTGR + + E + G
Sbjct: 140 GTPSAKTAFLFTRVGLA---GADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFF 196
Query: 214 NTLTPQNPNQNAAYLASLRIAEDIAHNGP 242
N L + +A +A GP
Sbjct: 197 NRLVE----PEELLAEAQALARRLA-AGP 220
>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional.
Length = 248
Score = 74.4 bits (183), Expect = 2e-15
Identities = 66/291 (22%), Positives = 119/291 (40%), Gaps = 49/291 (16%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
R G + M+RP NALN + E ++ ++ I D ++R V++ + FC GADL
Sbjct: 6 SREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGR-AFCVGADLS 64
Query: 104 H-RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
D +F +R ++ ++ ++G G + +AL+ D + A+ +V
Sbjct: 65 EFAPDFAIDLRETFYPIIR----EIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDV 120
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
+ +L + G L ++ G + L+ G + EA+ GL
Sbjct: 121 KFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILVLGGEF-TAEEAERWGL---------- 169
Query: 223 QNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282
L+I+ED + A MA R +GP + ++ +K +
Sbjct: 170 --------LKISEDPLSD---AEEMANRISNGPFQ---------SYI------AAKRMIN 203
Query: 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333
N EF +E+E + +T+D EG+ SF K +P +KG+
Sbjct: 204 LVLYNDLEEF------LEYESAIQGYLGKTEDFKEGISSFKEKREPKFKGI 248
>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA
hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA
hydratase, also called dienoyl-CoA hydratase, acts on
the product of benzoyl-CoA reductase (EC 1.3.99.15).
Benzoyl-CoA is a common intermediate in the degradation
of many aromatic compounds, and this enzyme is part of
an anaerobic pathway for dearomatization and
degradation.
Length = 251
Score = 73.8 bits (181), Expect = 3e-15
Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 8/207 (3%)
Query: 44 ERPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
ER G ++ L + RP+A N ++A ++ + A+ D +R VLL + F GA +
Sbjct: 6 ERDGKLLRLRLARPKA-NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPH-FSFGASV 63
Query: 103 KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ DQ + +++L + + PVP+L + G GGGLE+A A ++ AA +
Sbjct: 64 AEHMP---DQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDA 120
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
++G E L + A LP +G A++L+Y+GR +D E IGL N + ++P
Sbjct: 121 KLGQPEIVLGVFAPAASCL-LPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVA-EDPE 178
Query: 223 QNAAYLASLRIAEDIAHNGPIAVRMAK 249
A A+ A + AVR A+
Sbjct: 179 NAALAWFDEHPAKLSASSLRFAVRAAR 205
>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional.
Length = 342
Score = 74.9 bits (185), Expect = 4e-15
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 6/143 (4%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH-- 104
G++ L NRP+A NAL+ ++ I A++A D+ V V++ + FCAG D++
Sbjct: 14 GVITL--NRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALY 71
Query: 105 --RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ F + + P P +A++DG GGG+ ++ R+
Sbjct: 72 EAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERT 131
Query: 163 RMGLVETKLAIIPGAGGTQRLPR 185
+M + ET + P GGT L R
Sbjct: 132 KMAMPETGIGFFPDVGGTYFLSR 154
>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 72.5 bits (178), Expect = 1e-14
Identities = 78/304 (25%), Positives = 134/304 (44%), Gaps = 69/304 (22%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIR-GDEEVRCVLLRSLVKDVFCAGADLKHR 105
G+ L ++ P+ NA++ ++ + A++AI G EVRC++L + FC GA+L+ R
Sbjct: 13 GVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRG-FCTGANLQGR 71
Query: 106 LTLNE------DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
+ D + + +L ++P P++ ++G A G G+ AL D+ + A
Sbjct: 72 GSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCA 131
Query: 160 SNV-------RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGL 212
+ R+GLV P G T LPR+VG A EL G + + A GL
Sbjct: 132 RSAYFLQAFRRIGLV-------PDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGL 184
Query: 213 VNTLTPQNPNQNAAYLA-SLRIAEDIAHNGP-IAVRMAKRSI-DGPGRGTQYRDGQSTHS 269
VN + +A +A ++++A ++A NGP +A+ + ++ D P
Sbjct: 185 VNRVVD-----DAELMAEAMKLAHELA-NGPTVALGLIRKLYWDSP-------------- 224
Query: 270 PGRDGQGSKGGESKGTENQNREFQG-RYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKP 328
E+ E N E + R +G +T+D EG+ +FL K
Sbjct: 225 -----------ENDFEEQLNLEREAQRIAG------------KTEDFKEGVGAFLQKRPA 261
Query: 329 VYKG 332
+KG
Sbjct: 262 QFKG 265
>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase;
Provisional.
Length = 278
Score = 72.6 bits (178), Expect = 1e-14
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 4/163 (2%)
Query: 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRS-LVKDVFCAGADLK--HRLTLNEDQIRSF 116
N++ + + A+ A+ D VR V+ S L +DVF AG D+ + + + F
Sbjct: 33 NSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEF 92
Query: 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAI-IP 175
T +L + + + G+ GG ++L CD R+ + MGL E L I +P
Sbjct: 93 WLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVP 152
Query: 176 GAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218
+ R++ +A+ L+ GRLV EAK +GL++ + P
Sbjct: 153 KFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVP 195
>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional.
Length = 302
Score = 70.8 bits (174), Expect = 7e-14
Identities = 50/205 (24%), Positives = 77/205 (37%), Gaps = 41/205 (20%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK- 103
I + +NRP+ NA+ A E+ AVE D V +L+ K FCAG DL
Sbjct: 17 TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKG-FCAGYDLSA 75
Query: 104 ------------------HRLTLNEDQIRSFVSTLRYMTCQLES------IPVPVLAVLD 139
+ D + + M+ + P +A +
Sbjct: 76 YAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVH 135
Query: 140 GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAG------GTQRLPRIVGIPLAK 193
G GG ++AL CD +AA + ++G T++ +P G G QR AK
Sbjct: 136 GYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAYRLGPQR---------AK 186
Query: 194 ELIYTGRLVDSTEAKSIGLVNTLTP 218
L++TG + +A GL P
Sbjct: 187 RLLFTGDCITGAQAAEWGLAVEAVP 211
>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase;
Validated.
Length = 255
Score = 64.3 bits (157), Expect = 6e-12
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 6/171 (3%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
+ L ++RP+A+N +N L+ E + ++ R + V+L L +VFC GAD
Sbjct: 12 GDVCFLQLHRPEAQNTINDRLIAECMDVLD--RCEHAATIVVLEGL-PEVFCFGADFSAI 68
Query: 106 LTLNED-QIRSFVSTLRY-MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ + + Y + +L + P +A + G GG+ A DI +A
Sbjct: 69 AEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAP 128
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
L E +IP A L R +G A + + V + +A S GLV+
Sbjct: 129 FSLSELLFGLIP-ACVLPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVD 178
>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional.
Length = 251
Score = 60.2 bits (146), Expect = 2e-10
Identities = 53/216 (24%), Positives = 98/216 (45%), Gaps = 18/216 (8%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
PG+ + NRP+ +NA+ + + A++A D+ +R + + F AG D++
Sbjct: 14 PGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLG-TEGCFSAGNDMQDF 72
Query: 106 LTLN------EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
L +I F+ L P+++ +DG A G G + L CD+ A+
Sbjct: 73 LAAAMGGTSFGSEILDFLIA-------LAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFAS 125
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
LA++P AG + PR++G A L+ G + A+ GL+ +
Sbjct: 126 PRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIV-- 183
Query: 220 NPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGP 255
++ A +L+ AE++A P A+++A+ + GP
Sbjct: 184 --DEEAVEAETLKAAEELAAKPPQALQIARDLMRGP 217
>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase.
Length = 381
Score = 59.0 bits (142), Expect = 9e-10
Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 6/179 (3%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
E+ + L +NRP+ NAL+ ++ +L A D V+ V+L+ + FCAG D+
Sbjct: 15 EKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGR-AFCAGGDVA 73
Query: 104 HRL-TLNEDQIR---SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
+ + + R +F S + + + +++L+G GGG +++ R+A
Sbjct: 74 AVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIAT 133
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218
N + ET L + P G + L R+ G + + TG +D E + GL P
Sbjct: 134 ENTVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVGLTGARLDGAEMLACGLATHFVP 191
>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 407
Score = 55.4 bits (133), Expect = 1e-08
Identities = 46/199 (23%), Positives = 86/199 (43%), Gaps = 19/199 (9%)
Query: 21 PNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGD 80
PNY+ + + + L + + R I +NRP + NAL +V + E+ +
Sbjct: 32 PNYAANDDLQDQVLVE---GRAKSRAAI----LNRPSSLNALTIPMVARLKRLYESWEEN 84
Query: 81 EEVRCVLLRSLVKDVFCAGADLKHRLTLNE-------DQIRSFVSTLRYMTCQLESIPVP 133
++ VL++ + FC+GAD+ ++L ++ + F L + P
Sbjct: 85 PDIGFVLMKGSGR-AFCSGADV---VSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKP 140
Query: 134 VLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAK 193
+A++DG G G +++ RV E ++ P AG + L R+ G L +
Sbjct: 141 NVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LGE 199
Query: 194 ELIYTGRLVDSTEAKSIGL 212
L TG+ ++ E + GL
Sbjct: 200 YLALTGQKLNGVEMIACGL 218
>gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase. In the
presence of O2, the benzoyl-CoA oxygenase/reductase
BoxBA BoxAB converts benzoyl-CoA to
2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this
family, BoxC, homologous to enoyl-CoA
hydratases/isomerases, hydrolyze this compound to
3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Length = 546
Score = 54.8 bits (132), Expect = 3e-08
Identities = 56/189 (29%), Positives = 83/189 (43%), Gaps = 37/189 (19%)
Query: 69 EILTAVEAIRGDE-EVRCVLLRSLVKDVFCAGADLK--------HRL--------TLNED 111
E+ AV+ IR + EVR V++ S VFC+GA++ ++ T N
Sbjct: 52 ELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGI 111
Query: 112 QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD--IRVAASNVRMGLVET 169
+ S S L++ LA ++G+ GGG E+ALACD + V + + L E
Sbjct: 112 EDSSRHSGLKF------------LAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEV 159
Query: 170 K-LAIIPGAGGTQRL--PRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
L ++PG GG R+ R V A V AK LV+ + P+Q A
Sbjct: 160 PLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVK--PSQFDA 217
Query: 227 YLASLRIAE 235
+A R AE
Sbjct: 218 AIAE-RAAE 225
>gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional.
Length = 550
Score = 53.5 bits (129), Expect = 7e-08
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 36/137 (26%)
Query: 69 EILTAVEAIRGDE-EVRCVLLRSLVKDVFCAGADLK------HRLTLN------------ 109
E+ A++ IR + EVR V++ S VFC+GA++ H +N
Sbjct: 56 ELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGI 115
Query: 110 EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD--IRVAASNVRMGLV 167
ED R S L++ +A ++G+ GGG E+ALACD + V + + L
Sbjct: 116 EDSSRH--SGLKF------------IAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLP 161
Query: 168 ETK-LAIIPGAGGTQRL 183
E L ++PG GG R+
Sbjct: 162 EVPLLGVLPGTGGLTRV 178
>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 401
Score = 52.0 bits (124), Expect = 2e-07
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 6/164 (3%)
Query: 53 MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGAD---LKH-RLTL 108
+NRP A NAL + + + D + V+++ + FCAG D L H R
Sbjct: 52 LNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGR-AFCAGGDIVSLYHLRKRG 110
Query: 109 NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVE 168
+ D IR F S+L L + P +A+L+G GGG +++ RVA E
Sbjct: 111 SPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPE 170
Query: 169 TKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGL 212
T + P AG + L + G L + L TG + E + GL
Sbjct: 171 TIIGFHPDAGASFNLSHLPG-RLGEYLGLTGLKLSGAEMLACGL 213
>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional.
Length = 298
Score = 50.7 bits (121), Expect = 3e-07
Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 23/188 (12%)
Query: 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL- 106
+ + +NRP+ N + + +EI A+ D++++ ++LR + F G D
Sbjct: 15 VATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGR-AFSGGYDFGGGFQ 73
Query: 107 ----TLNED------------QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMA 150
+ D R T ++M + PV+A + G GG + A
Sbjct: 74 HWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMA--IWRASKPVIAQVHGWCVGGASDYA 131
Query: 151 LACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSI 210
L DI +A+ + +G T + + GA T + + K TGR + +A
Sbjct: 132 LCADIVIASDDAVIG---TPYSRMWGAYLTGMWLYRLSLAKVKWHSLTGRPLTGVQAAEA 188
Query: 211 GLVNTLTP 218
L+N P
Sbjct: 189 ELINEAVP 196
>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 379
Score = 50.2 bits (120), Expect = 6e-07
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 4/168 (2%)
Query: 53 MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--HRLTLNE 110
+NRP+ N ++ ++V + +E D+ V ++++ + F AG DLK + ++
Sbjct: 26 LNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGR-AFSAGGDLKMFYDGRESD 84
Query: 111 DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK 170
D V + ++ + + +A++ G GGG + + RV E
Sbjct: 85 DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEAS 144
Query: 171 LAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218
+ G + L R+ G L + L TG ++ E + GL P
Sbjct: 145 VGFHTDCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACGLATHFVP 191
>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA
hydrolase. Members of this protein family are
6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a
ring-hydrolyzing enzyme in the anaerobic metabolism of
aromatic enzymes by way of benzoyl-CoA, as seen in
Thauera aromatica, Geobacter metallireducens, and
Azoarcus sp. Note that Rhodopseudomonas palustris uses a
different pathway to perform a similar degradation of
benzoyl-CoA to 3-hydroxpimelyl-CoA.
Length = 360
Score = 49.9 bits (119), Expect = 7e-07
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 11/181 (6%)
Query: 46 PGI--VELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
PG+ + ++ P+ N+ +V+ I+ A D +V V+ ++ FC G + K
Sbjct: 34 PGLYNAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTK 93
Query: 104 HRLTL---NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
N + R ++ M + PV+ ++G GGG E+ +A D +A
Sbjct: 94 EYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQD 153
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVD---STEAKSIGLVNTLT 217
G K P G T LP ++G A + +G L + + +AK +G++ +
Sbjct: 154 LANFGQAGPKHGSAPIGGATDFLPLMIGCEQA---MVSGTLCEPWSAHKAKRLGIIMDVV 210
Query: 218 P 218
P
Sbjct: 211 P 211
>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein.
Length = 239
Score = 41.6 bits (98), Expect = 2e-04
Identities = 41/189 (21%), Positives = 82/189 (43%), Gaps = 23/189 (12%)
Query: 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--HRLTLNEDQIRSFVST 119
LN TL++ I +A+ ++ VL+ + F G DL ++ V+
Sbjct: 23 LNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAK 82
Query: 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVA--------ASNVRMGLV--ET 169
LR + L S+P+P +A + G A G +AL+ D + S V +GL +
Sbjct: 83 LRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDY 142
Query: 170 KLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLA 229
+A++ G+ R +++ + + EA +G+V++ + + A
Sbjct: 143 FMALLRAKIGSPAARR--------DVLLRAAKLTAEEAVEMGIVDSA---HDSAEETVEA 191
Query: 230 SLRIAEDIA 238
++R+ E++A
Sbjct: 192 AVRLGEELA 200
>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional.
Length = 229
Score = 31.5 bits (72), Expect = 0.49
Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 25/164 (15%)
Query: 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFV-- 117
NAL+ +++ + A++ D R V++ + +F G DLK +T + +
Sbjct: 24 NALSPAMIDALNAALDQAEDD---RAVVVITGQPGIFSGGFDLK-VMTSGAQAAIALLTA 79
Query: 118 -STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA-SNVRMGLVETKLAIIP 175
STL +L S P PV+ G A G + L+ D R+ ++GL E AI
Sbjct: 80 GSTLAR---RLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEV--AI-- 132
Query: 176 GAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
G T +P I LA+ RL S +++ P+
Sbjct: 133 --GMT--MP-HAAIELAR-----DRLTPSAFQRAVINAEMFDPE 166
>gnl|CDD|132923 cd00394, Clp_protease_like, Caseinolytic protease (ClpP) is an
ATP-dependent protease. Clp protease (caseinolytic
protease; ClpP; endopeptidase Clp; Peptidase S14;
ATP-dependent protease, ClpAP)-like enzymes are highly
conserved serine proteases and belong to the
ClpP/Crotonase superfamily. Included in this family are
Clp proteases that are involved in a number of cellular
processes such as degradation of misfolded proteins,
regulation of short-lived proteins and housekeeping
removal of dysfunctional proteins. They are also
implicated in the control of cell growth, targeting
DNA-binding protein from starved cells. The functional
Clp protease is comprised of two components: a
proteolytic component and one of several regulatory
ATPase components, both of which are required for
effective levels of protease activity in the presence of
ATP. Active site consists of the triad Ser, His and Asp,
preferring hydrophobic or non-polar residues at P1 or
P1' positions. The protease exists as a tetradecamer
made up of two heptameric rings stacked back-to-back
such that the catalytic triad of each subunit is located
at the interface between three monomers, thus making
oligomerization essential for function. Another family
included in this class of enzymes is the signal peptide
peptidase A (SppA; S49) which is involved in the
cleavage of signal peptides after their removal from the
precursor proteins by signal peptidases. Mutagenesis
studies suggest that the catalytic center of SppA
comprises a Ser-Lys dyad and not the usual Ser-His-Asp
catalytic triad found in the majority of serine
proteases. In addition to the carboxyl-terminal protease
domain that is conserved in all the S49 family members,
the E. coli SppA contains an amino-terminal domain.
Others, including sohB peptidase, protein C, protein
1510-N and archaeal signal peptide peptidase, do not
contain the amino-terminal domain. The third family
included in this hierarchy is nodulation formation
efficiency D (NfeD) which is a membrane-bound Clp-class
protease and only found in bacteria and archaea.
Majority of the NfeD genomes have been shown to possess
operons containing a homologous NfeD/stomatin gene pair,
causing NfeD to be previously named stomatin operon
partner protein (STOPP). NfeD homologs can be divided
into two groups: long and short forms. Long-form
homologs have a putative ClpP-class serine protease
domain while the short form homologs do not. Downstream
from the ClpP-class domain is the so-called NfeD or
DUF107 domain. N-terminal region of the NfeD homolog
PH1510 from Pyrococcus horikoshii has been shown to
possess serine protease activity having a Ser-Lys
catalytic dyad.
Length = 161
Score = 29.7 bits (67), Expect = 1.3
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
V + L++ PV+A + G A G +A A + V A R+G
Sbjct: 43 VDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAANKIVMAPGTRVGS 92
>gnl|CDD|224956 COG2045, COG2045, Phosphosulfolactate phosphohydrolase and related
enzymes [Coenzyme metabolism / General function
prediction only].
Length = 230
Score = 30.0 bits (68), Expect = 1.4
Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 20/127 (15%)
Query: 16 KVTKWPNYSTSVSKEGRKLTQIIYHNSPE--RPGIVE---LCMNRPQARNALNATLVEEI 70
++P + + G K+ NSP +VE L + AL E I
Sbjct: 54 VKRRYPGALLAGERGGAKIPGFDLGNSPLEITGELVEGKTLVLTTTNGTRALLRAKSEHI 113
Query: 71 LTA--------VEAIRGDEEVRCVL-----LRSLVKDVFCAGADLKHRLTLNEDQIRSFV 117
L EA++ E+V V+ R ++D CAGA + H L +
Sbjct: 114 LIGSLVNASAVAEALKELEDV-LVVPAGRNGRFALEDFLCAGA-IAHYLEGENGDGVAAA 171
Query: 118 STLRYMT 124
+ T
Sbjct: 172 AVYMERT 178
>gnl|CDD|148787 pfam07373, CAMP_factor, CAMP factor (Cfa). This family consists of
several bacterial CAMP factor (Cfa) proteins which seem
to be specific to Streptococcus species. The CAMP
reaction is a synergistic lysis of erythrocytes by the
interaction of an extracellular protein (CAMP factor)
produced by some streptococcal species with the
Staphylococcus aureus sphingomyelinase C (beta-toxin).
Length = 228
Score = 29.7 bits (67), Expect = 1.7
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMAL-ACDI---------- 155
+ EDQI + + LE+IP + D S+ +E+ D
Sbjct: 41 SDYEDQINDLLKAAFDLKTALETIPEGGVTFYDLSSIPARVELLTDVIDTIHTATHTLQN 100
Query: 156 RVAASNVRMGLVETKLAI 173
+V+ ++V +GL TK I
Sbjct: 101 KVSQAHVELGLEITKAVI 118
>gnl|CDD|149523 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate
binding domain. This domain is the substrate binding
domain of shikimate dehydrogenase.
Length = 83
Score = 27.9 bits (63), Expect = 2.0
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 10/44 (22%)
Query: 175 PGAGGTQRLPRIVGIPLAKELIYTGRLVD--STEAKSIGLVNTL 216
G G V IP KE L+D S EAK IG VNT+
Sbjct: 48 LGFRGL-----NVTIPH-KEAAIP--LLDELSPEAKRIGAVNTI 83
>gnl|CDD|218857 pfam06023, DUF911, Archaeal protein of unknown function (DUF911).
This family consists of several archaeal proteins of
unknown function.
Length = 290
Score = 29.0 bits (65), Expect = 3.8
Identities = 29/121 (23%), Positives = 43/121 (35%), Gaps = 21/121 (17%)
Query: 62 LNATLVEEILTAVEAIR----GDEEVRCVLLRSLVKDVFCAGAD-----------LKHRL 106
L + E A+E ++ E L RS + D F D L R+
Sbjct: 79 LGQAIHEAFAKAIEEVKSLIYSGEPPDSSLERSFMADEFGCPEDVREYAKALWKYLASRV 138
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
+ ++RS + IPV V +DGS G L+ +RV A + L
Sbjct: 139 SAELSEVRSKFPKATEDSAAFRVIPVAVEVRVDGSPLG------LSSYLRVDAFIPILPL 192
Query: 167 V 167
V
Sbjct: 193 V 193
>gnl|CDD|111993 pfam03157, Glutenin_hmw, High molecular weight glutenin subunit.
Members of this family include high molecular weight
subunits of glutenin. This group of gluten proteins is
thought to be largely responsible for the elastic
properties of gluten, and hence, doughs. Indeed,
glutenin high molecular weight subunits are classified
as elastomeric proteins, because the glutenin network
can withstand significant deformations without breaking,
and return to the original conformation when the stress
is removed. Elastomeric proteins differ considerably in
amino acid sequence, but they are all polymers whose
subunits consist of elastomeric domains, composed of
repeated motifs, and non-elastic domains that mediate
cross-linking between the subunits. The elastomeric
domain motifs are all rich in glycine residues in
addition to other hydrophobic residues. High molecular
weight glutenin subunits have an extensive central
elastomeric domain, flanked by two terminal non-elastic
domains that form disulphide cross-links. The central
elastomeric domain is characterized by the following
three repeated motifs: PGQGQQ, GYYPTS[P/L]QQ, GQQ. It
possesses overlapping beta-turns within and between the
repeated motifs, and assumes a regular helical secondary
structure with a diameter of approx. 1.9 nm and a pitch
of approx. 1.5 nm.
Length = 779
Score = 29.3 bits (64), Expect = 3.8
Identities = 18/65 (27%), Positives = 26/65 (40%)
Query: 219 QNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSK 278
Q P Q YL SL+ G + + PG+G Q GQ PG+ Q +
Sbjct: 369 QGPGQPGHYLTSLQQLGQGQQIGQLQQSAPGQKGQQPGQGQQPGQGQQGQQPGQGEQEQQ 428
Query: 279 GGESK 283
G+ +
Sbjct: 429 PGQGQ 433
>gnl|CDD|201520 pfam00945, Rhabdo_ncap, Rhabdovirus nucleocapsid protein. The
Nucleocapsid (N) Protein is said to have a "tight"
structure. The carboxyl end of the N-terminal domain
possesses an RNA binding domain. Sequence alignments
show 2 regions of reasonable conservation, approx.
64-103 and 201-329. A whole functional protein is
required for encapsidation to take place.
Length = 406
Score = 28.9 bits (65), Expect = 4.5
Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 25/130 (19%)
Query: 198 TGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGR 257
G L+ S +++ +++ + A L+ A + +R +
Sbjct: 296 VGSLLGSERSRNARVIDDIAYHELTVAALLLSY-------AFGSKAT--LEQRFFRDEKK 346
Query: 258 GTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDR-VIRTQDRV 316
T+YRD ++ K + +EW D + T D
Sbjct: 347 YTEYRDDDGDNTDAPLADDGDDEAPKSRDV-----------VEWLAWYEDIMMKLTPD-- 393
Query: 317 EGLKSFLGKY 326
+KSF +
Sbjct: 394 --MKSFARRA 401
>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 472
Score = 28.8 bits (64), Expect = 4.5
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 220 NPNQNAAYLASLRIAED---IAHNGPIAVRMAK 249
NP AA LA+L I D IA N P A RM +
Sbjct: 346 NPLACAAALATLDIFADDDVIARNQPTAARMTQ 378
>gnl|CDD|216445 pfam01343, Peptidase_S49, Peptidase family S49.
Length = 149
Score = 27.6 bits (62), Expect = 6.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 133 PVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLV 167
PV+A + A GG +A A D VA +G +
Sbjct: 3 PVVASMGNYAASGGYYLASAADKIVANPTTIVGSI 37
>gnl|CDD|129496 TIGR00401, msrA, methionine-S-sulfoxide reductase. This model
describes peptide methionine sulfoxide reductase (MsrA),
a repair enzyme for proteins that have been inactivated
by oxidation. The enzyme from E. coli is coextensive
with this model and has enzymatic activity. However, in
all completed genomes in which this module is present, a
second protein module, described in TIGR00357, is also
found, and in several cases as part of the same
polypeptide chain: N-terminal to this module in
Helicobacter pylori and Haemophilus influenzae (as in
PilB of Neisseria gonorrhoeae) but C-terminal to it in
Treponema pallidum. PilB, containing both domains, has
been shown to be important for the expression of
adhesins in certain pathogens [Protein fate, Protein
modification and repair, Cellular processes, Adaptations
to atypical conditions].
Length = 149
Score = 27.4 bits (61), Expect = 7.6
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 254 GPGRGTQYRDGQSTHSP 270
G GTQYR G HS
Sbjct: 85 GNDIGTQYRSGIYYHSD 101
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.395
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,828,953
Number of extensions: 1625855
Number of successful extensions: 1531
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1377
Number of HSP's successfully gapped: 123
Length of query: 333
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 236
Effective length of database: 6,635,264
Effective search space: 1565922304
Effective search space used: 1565922304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)