RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy503
(333 letters)
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding
protein,enoyl-COA hydratase, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Homo
sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Length = 272
Score = 304 bits (781), Expect = e-104
Identities = 125/306 (40%), Positives = 185/306 (60%), Gaps = 36/306 (11%)
Query: 28 SKEGRKLTQIIYHNSPE-RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCV 86
S E + ++ + E GIV L +NR +N+L+ L++ + AV+A++ D++VR +
Sbjct: 1 SSEMKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTI 60
Query: 87 LLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGG 146
++RS V +FCAGADLK R ++ ++ FVS +R + + ++PVP +A +DG A GGG
Sbjct: 61 IIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGG 120
Query: 147 LEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTE 206
LE+ALACDIRVAAS+ +MGLVETKLAIIPG GGTQRLPR +G+ LAKELI++ R++D E
Sbjct: 121 LELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKE 180
Query: 207 AKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQS 266
AK++GL++ + QN +AAY +L +A + GP+A+R+AK +I+
Sbjct: 181 AKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAIN------------- 227
Query: 267 THSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKY 326
+G E G+ E CY + I T+DR+EGL +F K
Sbjct: 228 -----------QGMEVDLVT-----------GLAIEEACYAQTIPTKDRLEGLLAFKEKR 265
Query: 327 KPVYKG 332
P YKG
Sbjct: 266 PPRYKG 271
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural
genomic for structural genomics of infectious diseases,
csgid; HET: MSE; 1.80A {Bacillus anthracis}
Length = 265
Score = 289 bits (741), Expect = 1e-97
Identities = 116/287 (40%), Positives = 163/287 (56%), Gaps = 39/287 (13%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
P +V++ +NR + N+L+ L+EE+ + I + R V+L + FCAGADLK R
Sbjct: 17 PHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKER 76
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
+NE+Q+R VS +R +E +P PV+A ++G A GGG E++LACD R+AA + +G
Sbjct: 77 AGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLG 136
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
L ET LAIIPGAGGTQRLPR++G+ AKELIYTGR + + EAK GLV + P +
Sbjct: 137 LTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVP----VHL 192
Query: 226 AYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGT 285
++ IAE IA NGPIAVR+AK +I G +
Sbjct: 193 LEEKAIEIAEKIASNGPIAVRLAKEAIS------------------------NGIQVDLH 228
Query: 286 ENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
G++ E Y+ VI T+DR+EGL++F K P+YKG
Sbjct: 229 T-----------GLQMEKQAYEGVIHTKDRLEGLQAFKEKRTPMYKG 264
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase,
structural genomics, NPPSFA; 2.16A {Geobacillus
kaustophilus}
Length = 265
Score = 257 bits (658), Expect = 3e-85
Identities = 80/290 (27%), Positives = 128/290 (44%), Gaps = 41/290 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
GI E+ ++ ++ N+ + +E A++ IR D +++ V++ S V F AGAD+
Sbjct: 16 EDGIAEIHLHINKS-NSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINF 74
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VR 163
+ + F ++ P +A L+G GGGLEMALACD+R +
Sbjct: 75 LRSADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGK 134
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
+GL E L ++ G GGTQRL R++G A ++ TG + EA IGLVN + PQ +
Sbjct: 135 IGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAETR 194
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
A +A++ AV K +I G E
Sbjct: 195 ERT----REYARKLANSATYAVSNIKLAIM------------------------NGKEM- 225
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333
+ +EG + + R++D EGL +FL K +P +KG+
Sbjct: 226 ----------PLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQPNWKGI 265
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Length = 277
Score = 242 bits (619), Expect = 3e-79
Identities = 73/288 (25%), Positives = 117/288 (40%), Gaps = 41/288 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
G+ L ++RP NA+ + EI+ A + + +++ V+L + +F AG D+
Sbjct: 31 DQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHE-IFSAGDDMPE 88
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
TLN + + + +IP P +A + G A G GL +ALA D RV+ NV+
Sbjct: 89 LRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKF 148
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
G E +IPG GG RL R+VG AKEL+++GR D+ EA ++GL++ + + +
Sbjct: 149 GATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDVYD 208
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
+A + A P A+ AK I+ E +
Sbjct: 209 SA----VAWARRYLECPPRALAAAKAVIN------------------------DVFELEA 240
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
TE E Y + R + G G
Sbjct: 241 TE-----------RAAAERRRYVELFAAGQRGPDGRGPGGGNTGDQDG 277
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics,
protein structure INI NEW YORK structural genomix
research consortium; 2.00A {Rhodopseudomonas palustris}
Length = 275
Score = 241 bits (617), Expect = 6e-79
Identities = 64/288 (22%), Positives = 113/288 (39%), Gaps = 42/288 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
++ + +NRP+ RNALN L+ + + I +++R V++ + D F AG DL
Sbjct: 23 VGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHG-IGDHFSAGLDLSE 79
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ + T + +++ VPV+A L G+ GGGLE+A A IRVA ++
Sbjct: 80 LRERDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYY 139
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
L E I G GG+ RLPR++G+ +++ TGR+ + E G L +
Sbjct: 140 ALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYD 199
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
A L + +A N P+ +++ E+
Sbjct: 200 KA----LELGNRVAQNAPLTNFAVLQALP------------------------MIAEANP 231
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
G+ E + Q+ +++FL +
Sbjct: 232 QT-----------GLLMESLMATVAQSDQEAKTRIRAFLDHKTAKVRE 268
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Length = 258
Score = 239 bits (612), Expect = 2e-78
Identities = 80/288 (27%), Positives = 140/288 (48%), Gaps = 42/288 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ + + RP NAL+ +V EI+ AVEA +E+VR ++L + F AGAD++
Sbjct: 12 EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGR-AFAAGADIQE 70
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ ++ + +L + P++A ++G A GGG E+AL+CD+ VA+S
Sbjct: 71 MAKDDPIRLEWL-NQFADWD-RLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEF 128
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
G E L ++PGAGGTQRL +++G A E ++TG + + EA+ +G+VN +
Sbjct: 129 GFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPELLME 188
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
+R+A +A P+A+R+ K ++ K +
Sbjct: 189 ET----MRLAGRLAEQPPLALRLIKEAVQ------------------------KAVDYPL 220
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E GM++E + + ++D+ EG+ +FL K KP ++G
Sbjct: 221 YE-----------GMQFERKNFYLLFASEDQKEGMAAFLEKRKPRFQG 257
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli}
SCOP: c.14.1.3 PDB: 1ef9_A*
Length = 261
Score = 237 bits (608), Expect = 8e-78
Identities = 63/289 (21%), Positives = 122/289 (42%), Gaps = 40/289 (13%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKD-VFCAGADLK 103
+ + N + NAL+ +++++ A+ + E +RC++LR+ VF AG D+
Sbjct: 11 INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIH 69
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ D S+ LR +T ++ P P++++++GS +GG EM ++ D+ +AAS
Sbjct: 70 ELPSGGRDP-LSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTST 128
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
+ L + G L R G + KELI+T + + A ++G++N + +
Sbjct: 129 FSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELE 188
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
+ L++A I+ P+A+ + K + + +
Sbjct: 189 DFT----LQMAHHISEKAPLAIAVIKEELR-----------VLGEAHTMNSD-------- 225
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E YD ++D EG+ +FL K KP + G
Sbjct: 226 EFERIQGMR----------RAVYD----SEDYQEGMNAFLEKRKPNFVG 260
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET:
CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Length = 260
Score = 236 bits (605), Expect = 3e-77
Identities = 57/287 (19%), Positives = 106/287 (36%), Gaps = 42/287 (14%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
G+ + P N+L+ + E++ ++E + D+ R V+L S VF AG DL
Sbjct: 11 AGAGVAVMKFKNPPV-NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLT 69
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ + ++ + +L + +++ ++G+ GG +AL CD R+ A N R
Sbjct: 70 EMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPR 129
Query: 164 --MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNP 221
+GL ET+L II L +G A+ + G L EA +G+V+ + P+
Sbjct: 130 YCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQ 189
Query: 222 NQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281
Q+ A L A ++ K +
Sbjct: 190 VQSTA----LSAIAQWMAIPDHARQLTKAMMR---------------------------- 217
Query: 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKP 328
K T + + + + I + L+ +L + K
Sbjct: 218 -KATA------SRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKE 257
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 236 bits (604), Expect = 8e-77
Identities = 63/294 (21%), Positives = 102/294 (34%), Gaps = 49/294 (16%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
G+ + ++ P N + AT++ E+ T + + D VR ++ S + F A D++
Sbjct: 16 EHGVARIILDNP-PVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRI 74
Query: 105 RLTLNEDQIRSFVSTLRYMTCQ-----LESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
++ Q + + Q + P + L G A GGG E A D+ AA
Sbjct: 75 GEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAA 134
Query: 160 S-NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218
+ +G +E + IIPG GGTQ L VG A E++ T L D+ A S G +N P
Sbjct: 135 AETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALP 194
Query: 219 QNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSK 278
+ R+A +IA + AKRS+
Sbjct: 195 ADELDEYV----DRVARNIAALPDGVIEAAKRSLP---ADDL------------------ 229
Query: 279 GGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
G+ E + + + L G
Sbjct: 230 -----------------KEGLLGENDAWAATFSLPAAQQLISGGLKDGAQTPAG 266
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC;
2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A*
1dub_A* 1ey3_A* 2hw5_A*
Length = 260
Score = 233 bits (597), Expect = 4e-76
Identities = 94/296 (31%), Positives = 131/296 (44%), Gaps = 42/296 (14%)
Query: 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
II + + + +NRP+A NAL L+EE+ A+E D V ++L K F
Sbjct: 6 IITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEK-AF 64
Query: 97 CAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
AGAD+K S L + + I PV+A ++G A GGG E+A+ CDI
Sbjct: 65 AAGADIKEMQNRTFQDCYSG-KFLSHWD-HITRIKKPVIAAVNGYALGGGCELAMMCDII 122
Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTL 216
A + G E L IPGAGGTQRL R VG LA E++ TG + + +AK GLV+ +
Sbjct: 123 YAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKI 182
Query: 217 TPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQG 276
P A ++ AE IA+N I V MAK S++
Sbjct: 183 FPVETLVEEA----IQCAEKIANNSKIIVAMAKESVN----------------------- 215
Query: 277 SKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E TE G + E + T DR EG+ +F+ K K +K
Sbjct: 216 -AAFEMTLTE-----------GNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKD 259
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FLC PG4; 1.82A {Bacillus anthracis}
Length = 261
Score = 233 bits (597), Expect = 5e-76
Identities = 76/289 (26%), Positives = 126/289 (43%), Gaps = 42/289 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
I +N A NA+++ ++ ++ ++ + D+ +R V++ + F AGAD+K
Sbjct: 13 EDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGR-FFSAGADIKE 70
Query: 105 RLTLNE-DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
++ E Q + ++E PV+A + G+A GGGLE A++C +R A + +
Sbjct: 71 FTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAK 130
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
+GL E L +IPG GTQRLPR VG A E++ T + EA GLVN + +
Sbjct: 131 LGLPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAEETFL 190
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
+ L++A+ IA P R + S
Sbjct: 191 DDT----LKVAKQIAGKSPATARAVLELLQ------------------------TTKSSH 222
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E G++ E + V ++D EG+ +FL K KP + G
Sbjct: 223 YYE-----------GVQREAQIFGEVFTSEDGREGVAAFLEKRKPSFSG 260
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics
center for infectious DI enoyl COA, actinobacteria,
lyase; 1.50A {Mycobacterium smegmatis}
Length = 263
Score = 232 bits (595), Expect = 7e-76
Identities = 87/289 (30%), Positives = 130/289 (44%), Gaps = 42/289 (14%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
G+ + ++RP A NALN TL E+L A D E+ +++ + F AGAD+
Sbjct: 16 PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSER-AFAAGADIA 74
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+TL Q R + L L + P++A + G A GGG E+A+ CD+ +AA R
Sbjct: 75 EMVTLTPHQARER-NLLSGWD-SLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTAR 132
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
G E L I+PG GGTQRL R VG A +L TGR + + EA+ +GLV+ + P
Sbjct: 133 FGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAADLL 192
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
+ A L +A+ IA A R K +I+ + E
Sbjct: 193 DEA----LAVAQRIARMSRPAGRAVKDAIN------------------------EAFERP 224
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ GM +E + + T D+ EG+ +FL K P +
Sbjct: 225 LSA-----------GMRYERDAFYAMFDTHDQTEGMTAFLEKRTPEFTD 262
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Mycobacterium abscessus}
Length = 265
Score = 233 bits (596), Expect = 8e-76
Identities = 76/293 (25%), Positives = 116/293 (39%), Gaps = 49/293 (16%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
+V L MNRP RNAL+ +V + A + I D+ +R +L + +C G
Sbjct: 16 DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSA-----YCVGG 70
Query: 101 DLKHRLTLNEDQIRSFVSTLRYMT-CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
DL + + ++ P++A ++G+ GGG EM DIRV+
Sbjct: 71 DLSDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSD 130
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
+ GL E + ++PGAG RL R + A E+I TG + + EA GLV + P
Sbjct: 131 EHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPA 190
Query: 220 NPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKG 279
+ A +A+ I NGP+AVR AK +I +
Sbjct: 191 GTALDKA----RSLADRIVRNGPLAVRNAKEAIV------------------------RS 222
Query: 280 GESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
G + E VI + D EGL +F K + + G
Sbjct: 223 GWLAEED-----------ARAIEARLTRPVITSADAREGLAAFKEKREARFTG 264
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.10A {Mycobacterium abscessus}
Length = 265
Score = 231 bits (591), Expect = 3e-75
Identities = 62/293 (21%), Positives = 106/293 (36%), Gaps = 49/293 (16%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
++ + +NRP RNA + T++EE+ A+ D ++R +L F AG
Sbjct: 16 DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPL-----FTAGL 70
Query: 101 DLKHRLTLNEDQIRSFVS-TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
DL + + + P+L + G G+E+ALA DI +A
Sbjct: 71 DLASVAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIAD 130
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
+E I P G T R PR G A + T D+ EA IG+V + P
Sbjct: 131 ETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQEIVPV 190
Query: 220 NPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKG 279
+ + A + IA+ IA P+ V+ R+ +
Sbjct: 191 GEHVDTA----IAIAQTIARQAPLGVQATLRNAR---------------------LAVRE 225
Query: 280 GESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
G++ E + + ++D G+++FL + + G
Sbjct: 226 GDAAAEEQLVPTVR--------------ELFTSEDATLGVQAFLSRTTAEFVG 264
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism,
lyase, structural genomics; HET: PGE; 2.30A
{Mycobacterium tuberculosis}
Length = 264
Score = 230 bits (588), Expect = 8e-75
Identities = 63/288 (21%), Positives = 114/288 (39%), Gaps = 52/288 (18%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
++ + + RP+ RNALN+ LVEE+ A+ GD R ++L FCAGADL
Sbjct: 28 AEAVLTIELQRPERRNALNSQLVEELTQAIRKA-GDGSARAIVLTGQGT-AFCAGADLSG 85
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ L + +++ P+PV+ ++G A G GL++A+ CD+RV A +
Sbjct: 86 D-----AFAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFF 140
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
+K + +RL +VG A+ ++ + + + A G+ N +
Sbjct: 141 QFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLA---- 196
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
+ A +IA P+A++ AKR +
Sbjct: 197 ----DAQAWAAEIARLAPLAIQHAKRVL-------------------------------- 220
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
N + +D+ +QD +E + + K P ++G
Sbjct: 221 ----NDD-GAIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPKFQG 263
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious
DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium
avium subsp} PDB: 3r9s_A 3r0o_A
Length = 267
Score = 229 bits (587), Expect = 1e-74
Identities = 79/288 (27%), Positives = 125/288 (43%), Gaps = 37/288 (12%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R ++ + +NRP+ARNA+NA + + A+E + D EVR V+L FCAGADLK
Sbjct: 16 RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKA 75
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ I P +A ++G+A GGG E+ALA D+ VA +
Sbjct: 76 IARRENLYHPDH-PEWGFAGYVRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQF 134
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
GL E K +I AGG R+ + +A L+ TG + + A+ GL+N + +
Sbjct: 135 GLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEAGSVLD 194
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
AA L +A I N P++V+ +KR G G D
Sbjct: 195 AA----LALASAITVNAPLSVQASKRIAYGVDDGVVVGDEP------------------- 231
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
G + +++++D EG ++F K +PV++
Sbjct: 232 -------------GWDRTMREMRALLKSEDAKEGPRAFAEKREPVWQA 266
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 229 bits (586), Expect = 2e-74
Identities = 56/290 (19%), Positives = 109/290 (37%), Gaps = 46/290 (15%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + ++ P+ +N L+A L +L A+ A + + ++L+S + F +G L+ L
Sbjct: 13 DALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLL 72
Query: 107 TLNEDQ----IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
DQ +R + L + ++ + P +A+++G AYGGG M LACD R+A
Sbjct: 73 ICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRA 132
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
+ K+ I P G + LPRI+G L+ G+L S EA +GL+ +
Sbjct: 133 KFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICEN--- 189
Query: 223 QNAAYL--ASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280
L + ++ A+ K+ +
Sbjct: 190 --KQELQERVKNYLKAVSEGYVPAIAATKKLLK--------------------------- 220
Query: 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330
+E E + + + + L++ + + +
Sbjct: 221 --GKAAE------ELKQQLEQETEELVALFKQTEIKKRLEALVEGHHHHH 262
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase,
crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens}
PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E*
2vsu_F* 2vsu_E* 2vsu_C*
Length = 276
Score = 229 bits (587), Expect = 2e-74
Identities = 62/312 (19%), Positives = 108/312 (34%), Gaps = 47/312 (15%)
Query: 28 SKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVL 87
S + + GI + +NRP+ RNA++ TL E++ +E + D ++
Sbjct: 2 STYEGRWKTVKVE---IEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLV 58
Query: 88 LRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ-----LESIPVPVLAVLDGSA 142
L + + AG DLK + +R Q L P +A+++G
Sbjct: 59 LTGAGE-AWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWC 117
Query: 143 YGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLV 202
+GGG +ACD+ + A GL E I PG ++ + VG + I TG+
Sbjct: 118 FGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTF 177
Query: 203 DSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYR 262
+A +GLVN P + + +A ++ P+ +R AK
Sbjct: 178 GGQKAAEMGLVNESVPLAQLREVT----IELARNLLEKNPVVLRAAKHGFK--------- 224
Query: 263 DGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSF 322
+ + + + R +G+K F
Sbjct: 225 --RCRELTWEQNEDYLYAK--------LDQSRLLDT-------------EGGREQGMKQF 261
Query: 323 LGK--YKPVYKG 332
L KP +
Sbjct: 262 LDDKSIKPGLQA 273
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.85A {Thermus thermophilus} SCOP:
c.14.1.3
Length = 253
Score = 228 bits (583), Expect = 4e-74
Identities = 76/290 (26%), Positives = 125/290 (43%), Gaps = 44/290 (15%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
E+ + + +N P+ RN L+ + +L A++ + D VR V+L K F AGADL
Sbjct: 5 EKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGK-AFSAGADLA 63
Query: 104 HRLTLNE---DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
+ E ++ +L + ++ + P P +A ++G A GG +ALACD+ V
Sbjct: 64 FLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDE 123
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQN 220
R+G E K+ + + L R VG AK+L+ TGRLV++ EAK++GLVN + P
Sbjct: 124 EARLGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPG 182
Query: 221 PNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280
A +AE++A N P ++R+ K +
Sbjct: 183 KALEEA----KALAEEVAKNAPTSLRLTKELLL------------------------ALP 214
Query: 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330
+ G + V T D EG+++F K P +
Sbjct: 215 GMGLED-----------GFRLAALANAWVRETGDLAEGIRAFFEKRPPRF 253
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A
2iex_A
Length = 289
Score = 229 bits (586), Expect = 5e-74
Identities = 76/297 (25%), Positives = 125/297 (42%), Gaps = 44/297 (14%)
Query: 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
I Y S + GI ++ +NRPQ RNA V+E++ A+ R D+ + ++L F
Sbjct: 29 IRYEKSTD--GIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAF 86
Query: 97 CAGADLKHRLTLNEDQIRSFVSTLRYMTCQ--LESIPVPVLAVLDGSAYGGGLEMALACD 154
C+G D K R + S V L + Q + + P PV+A++ G + GGG + + CD
Sbjct: 87 CSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCD 146
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
+ +AA N G K+ G G + RIVG A+E+ + R D+ +A +GLVN
Sbjct: 147 LTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVN 206
Query: 215 TLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDG 274
T+ P + +R ++ N P+A+R K ++
Sbjct: 207 TVVPLADLEKET----VRWCREMLQNSPMALRCLKAAL---------------------- 240
Query: 275 QGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331
N + G+ E G T++ EG +F K +P +
Sbjct: 241 --------------NADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFS 283
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS,
fatty acid metaboli metabolism, lyase, structural
genomics; 1.80A {Mycobacterium tuberculosis} PDB:
3q0j_A* 3pzk_A 3q0g_A*
Length = 278
Score = 228 bits (584), Expect = 5e-74
Identities = 83/290 (28%), Positives = 136/290 (46%), Gaps = 46/290 (15%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK- 103
+ + +NRPQA NALN+ ++ E+ +A + D ++ +++ K F AGAD+K
Sbjct: 32 DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAK-AFAAGADIKE 90
Query: 104 -HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
LT + F +T +L ++ P +A + G A GGG E+A+ CD+ +AA
Sbjct: 91 MADLTFADAFTADFFATWG----KLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTA 146
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
+ G E KL ++PG GG+QRL R +G A +LI TGR +D+ EA+ GLV+ + P +
Sbjct: 147 KFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDL 206
Query: 223 QNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282
A A I+ A RMAK +++ + ES
Sbjct: 207 LTEA----RATATTISQMSASAARMAKEAVN------------------------RAFES 238
Query: 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+E G+ +E + T+D+ EG+ +F+ K P +
Sbjct: 239 SLSE-----------GLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFTH 277
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 227 bits (581), Expect = 8e-74
Identities = 68/290 (23%), Positives = 114/290 (39%), Gaps = 52/290 (17%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ L +NRPQ+RNAL+A L A+ + D++V V++ VFCAG DLK
Sbjct: 16 TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADP-VFCAGLDLKE 74
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
E ++ + + PV+ ++G+A GGLE+AL CDI +A+ N +
Sbjct: 75 LGDTTELP---------DISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKF 125
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
++ ++P G + RLP+ VG+ LA+ + TG + + +A GLV + +
Sbjct: 126 ADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAHDDLLT 185
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
AA R+A I N AVR S + +
Sbjct: 186 AA----RRVAASIVGNNQKAVRALLDSYH------------------------RIDALQT 217
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIR---TQDRVEGLKSFLGKYKPVYK 331
+ E + +R D S + + + +
Sbjct: 218 GG-----------ALWAEAEAARQWMRSTSGDDIAASRASVIERGRSQVR 256
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA;
2.9A {Staphylococcus aureus}
Length = 273
Score = 227 bits (581), Expect = 1e-73
Identities = 74/297 (24%), Positives = 116/297 (39%), Gaps = 46/297 (15%)
Query: 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
I Y GI ++ +NRP+ RNA V E++ A R D+ V ++L F
Sbjct: 15 IKYE---FYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAF 71
Query: 97 CAGADLKHRLTLNEDQIRSFVSTLRYMTCQ--LESIPVPVLAVLDGSAYGGGLEMALACD 154
C+G D K R L + Q + IP PV+A++ G A GGG + + CD
Sbjct: 72 CSGGDQKKRGHGGYVGEDQI-PRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCD 130
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
+ +AA N G K+ G+ L RIVG A+E+ Y R ++ EA +GLVN
Sbjct: 131 LTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVN 190
Query: 215 TLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDG 274
T+ P ++ ++ ++I + P A+R K ++
Sbjct: 191 TVVPLEKVEDET----VQWCKEIMKHSPTALRFLKAAM---------------------- 224
Query: 275 QGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331
N + G + G T + EG +F K P +
Sbjct: 225 --------------NADTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPDFD 267
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 226 bits (578), Expect = 6e-73
Identities = 53/285 (18%), Positives = 94/285 (32%), Gaps = 45/285 (15%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
++ N P N + +V +++ +E + R V+ S D F D+
Sbjct: 15 DGTVLSATFNAP-PMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTK 73
Query: 105 RLTLNEDQIRSFVSTLRYMTC---QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS- 160
+ ++ + +L +P +A L G A G G E LACD+R A+
Sbjct: 74 VPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRE 133
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQN 220
N +G E + PGAG Q L R++G A E + T D+ A+ G VN P
Sbjct: 134 NAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDA 193
Query: 221 PNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGG 280
IA ++ A+ AK +I+
Sbjct: 194 ELDEFV----AGIAARMSGFPRDALIAAKSAIN-------------------------AI 224
Query: 281 ESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGK 325
+ + + +++R + + +
Sbjct: 225 SLPAPA-----------EVRADAALFQQLVRGEKVQQRTAELFKQ 258
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP:
c.14.1.3 PDB: 2vre_A
Length = 275
Score = 225 bits (577), Expect = 7e-73
Identities = 64/296 (21%), Positives = 126/296 (42%), Gaps = 51/296 (17%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ ++ + +NRP+ RNA+N E++ + I D + R V++ K +F +G DL
Sbjct: 11 QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGK-MFTSGIDLMD 69
Query: 105 RLTL-----------NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALAC 153
+ +R +S + +E P PV+A + G GGG+++ AC
Sbjct: 70 MASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISAC 129
Query: 154 DIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIP-LAKELIYTGRLVDSTEAKSIGL 212
DIR + + E + + G QRLP+++G L EL +T R + + EA GL
Sbjct: 130 DIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGL 189
Query: 213 VNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272
V+ + P+++ A+ +A DI+ P+AV+ +K ++
Sbjct: 190 VSRVF---PDKDVMLNAAFALAADISSKSPVAVQGSKINLI------------------- 227
Query: 273 DGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKP 328
++ E +++ +++TQD ++ +++ + K
Sbjct: 228 ----------YSRDHSVDE------SLDYMATWNMSMLQTQDIIKSVQAAMEKKDS 267
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A
2q2x_A
Length = 243
Score = 224 bits (574), Expect = 7e-73
Identities = 43/278 (15%), Positives = 95/278 (34%), Gaps = 45/278 (16%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
G+V++ M +RN + ++VE + + +++ + V+L F +GA +
Sbjct: 10 GNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGN-YFSSGASKEF 68
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ ++ + +P++A + G ++GGGL + L D V +
Sbjct: 69 LIRKTRGEVEVL----DLSG-LILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVY 123
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
K P + L +G LA+E+IYTG E G+ + + N
Sbjct: 124 ATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSRQDVLN 183
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
A ++ + IA + +++ K+ + ++K
Sbjct: 184 YA----QQLGQKIAKSPRLSLVALKQHLS------------------------ADIKAKF 215
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSF 322
E ++ E + + ++
Sbjct: 216 PE-----------AIKKELEIHQVTFNQPEIASRIQQE 242
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein;
2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB:
2a81_A*
Length = 250
Score = 224 bits (573), Expect = 1e-72
Identities = 54/282 (19%), Positives = 98/282 (34%), Gaps = 41/282 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ + ++ P N + TL + A+ D+ VR V++ + F AG D
Sbjct: 7 SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNE 66
Query: 105 RLTLN-EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
L+ + I ++ + + + ++ P +A +DG A G G + AL D R+ AS
Sbjct: 67 VKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTAN 126
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
+ E K I G L G +E+IY + +D+ LVN + +
Sbjct: 127 FVMPELKHGIGCSVGAAI-LGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALL 185
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
+AA + A +A A KR+++ K
Sbjct: 186 DAA----ITQAHVMASYPASAFINTKRAVN------------------------KPFIHL 217
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGK 325
+ + + + +D K+ LGK
Sbjct: 218 LEQ-----------TRDASKAVHKAAFQARDAQGHFKNVLGK 248
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics
center for infectious DI niaid; 1.75A {Mycobacterium
marinum}
Length = 278
Score = 224 bits (574), Expect = 2e-72
Identities = 79/295 (26%), Positives = 126/295 (42%), Gaps = 51/295 (17%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
R + + MNRP RNAL+ +++ ++ A + + D ++RC +L FCAG
Sbjct: 27 RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGY-----FCAGM 81
Query: 101 DLKHRLTLNEDQI---RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
DLK S+ + + + P++A ++G A GG E+ DIRV
Sbjct: 82 DLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRV 141
Query: 158 AASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLT 217
AA + + G+ E K ++ P G RL R + +A +L+ TGR + + EAK +GLV +
Sbjct: 142 AAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVV 201
Query: 218 PQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGS 277
P A L IAE IA NGP+AV+ R+I R+ + H
Sbjct: 202 PDGQALTKA----LEIAEIIAANGPLAVQAILRTI---------RETEGMHEN------- 241
Query: 278 KGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ + V + D EG ++F K KP ++
Sbjct: 242 -------------------EAFKIDTRIGIEVFLSDDAKEGPQAFAQKRKPNFQN 277
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 1.60A {Mycobacterium
marinum M} PDB: 3q1t_A
Length = 272
Score = 223 bits (572), Expect = 3e-72
Identities = 63/289 (21%), Positives = 107/289 (37%), Gaps = 44/289 (15%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
G++ L ++ P N++ + ++ I D +VR VL+R K F +G +
Sbjct: 22 HGVLNLVLDSP-GLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGK-AFSSGGSFELI 79
Query: 106 --LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ + + R + L ++ PV++ + G A G GL +AL DI VA++ +
Sbjct: 80 DETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAK 139
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
+ TKL + G P +VG+ AK + T + EA+ IGLV+T +
Sbjct: 140 IIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVDDDEVL 199
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
A R+AE++A A+R KRS+
Sbjct: 200 PTA----TRLAENLAQGAQNAIRWTKRSL------------------------------- 224
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
N ++ E D EGL + K +
Sbjct: 225 -----NHWYRMFGPTFETSLGLEFLGFTGPDVQEGLAAHRQKRPARFTD 268
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 223 bits (571), Expect = 3e-72
Identities = 54/288 (18%), Positives = 111/288 (38%), Gaps = 45/288 (15%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G++ L +NRP+A+NAL L I A++ +++VR V+LR F AG D+K +
Sbjct: 14 GVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEH-DFTAGNDMKDFM 72
Query: 107 TLNEDQIRSFVSTLRYMTC--QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
++ + + P++ + G A G G+ + L D+ A +
Sbjct: 73 GFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALF 132
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
+ L + P G +Q L + G A EL++T + ++ A GLVN +
Sbjct: 133 QIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIVED----- 187
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
AY + A+ + +++ K +
Sbjct: 188 -AYATAQATAQHLTALPLASLKQTKALM-------------------------------- 214
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ ++ E + + +++ + +E +++F+ K +P +
Sbjct: 215 ----KHDLDQIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKRQPDFSQ 258
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 2.20A {Mycobacterium marinum}
Length = 265
Score = 223 bits (571), Expect = 4e-72
Identities = 73/288 (25%), Positives = 118/288 (40%), Gaps = 45/288 (15%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R I+ + +NRP+A+N++NA + + A++ + D + +L FCAG DLK
Sbjct: 22 RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTG-AGGSFCAGMDLKA 80
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ R + P++A ++G A GG E+ALA D+ VAA +
Sbjct: 81 FARGENVVVEG-----RGLGFTERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSAF 135
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
G+ E K ++ G GG RLP + +A EL TG + + A ++G+VN L +
Sbjct: 136 GIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERAHALGMVNVLAEPGAALD 195
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
AA + +AE I NGP+AV KR I + +
Sbjct: 196 AA----IALAEKITANGPLAVAATKRII---------TESRGWSLD-------------- 228
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ + + + D EG +F K P + G
Sbjct: 229 ------------TRFAQQMKILFPIFTSNDAKEGAIAFAEKRPPRWTG 264
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus}
Length = 265
Score = 222 bits (568), Expect = 9e-72
Identities = 70/293 (23%), Positives = 115/293 (39%), Gaps = 48/293 (16%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
R G+ L ++ P RN+ L ++ A + + D VR ++L + FC+GA
Sbjct: 14 RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPA-----FCSGA 68
Query: 101 DLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
+ R+ + + + PV+A ++G A G G+ +AL DIR+ A
Sbjct: 69 QIS-AAAETFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAE 127
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQN 220
R + + + + P A LPR+VG +A EL+ TG + A GL N P
Sbjct: 128 EGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAG 187
Query: 221 PNQNAAYLASLRIAEDIAHN-GPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKG 279
AA LR+A DIA N P + + KR + + + S
Sbjct: 188 KVLGAA----LRMAHDIATNVAPESAALTKRLL--------WDAQMTGMSAAE------- 228
Query: 280 GESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E + R++ +QD EG ++F+ P + G
Sbjct: 229 ------------------VAARETADHLRLMGSQDAAEGPRAFIDGRPPRWAG 263
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.35A {Mycobacterium abscessus}
Length = 290
Score = 223 bits (570), Expect = 1e-71
Identities = 66/300 (22%), Positives = 109/300 (36%), Gaps = 54/300 (18%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
RP I + +NRP+ NA+ ++ + I D +VR V++ + FC+GA
Sbjct: 31 RPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKG-----FCSGA 85
Query: 101 DLKHRLTLNE-------DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALAC 153
D K + + L + L + PV+A ++G+A GGGL +ALAC
Sbjct: 86 DQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALAC 145
Query: 154 DIRVAASNVRMGLVETKLAIIPG-AGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGL 212
D+RVA+ + + G + LPR +G A +++ TGR VD+ EA+ IGL
Sbjct: 146 DVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGL 205
Query: 213 VNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGR 272
V+ I E IA + + KR+I +
Sbjct: 206 VSRKVASESLLEEC----YAIGERIAGFSRPGIELTKRTIW-----------SGLDAASL 250
Query: 273 DGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ Y + T + E + K ++
Sbjct: 251 ESH-----------MHQEGLGQLYVRL-----------LTDNFEEATAARKEKRPAEFRD 288
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2,
protein structure initiative, EN hydratase; 1.76A
{Bordetella parapertussis}
Length = 254
Score = 222 bits (567), Expect = 1e-71
Identities = 52/284 (18%), Positives = 91/284 (32%), Gaps = 51/284 (17%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
RP ++RP+ RNAL+A LVE ++ V+A E+V ++ + F AG D
Sbjct: 14 RPAAWTFTLSRPEKRNALSAELVEALIDGVDAA-HREQVPLLVFAGAGR-NFSAGFDFTD 71
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
T +E + + + + ++ P LA+ G +G G+++ AC R
Sbjct: 72 YETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGF 131
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
+ K ++ GT+R IVG A ++ + R D+ EA+ IG V Q
Sbjct: 132 RMPGLKFGLVL---GTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQAQWPA 188
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
AE P R +
Sbjct: 189 LI----DAAAEAATALDPATRATLHRVLRDDHDDA------------------------- 219
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKP 328
+ + ++ +L +
Sbjct: 220 ---------------DLAALARSA--AQPGFKARIRDYLAQPAA 246
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A
1rjm_A* 1rjn_A* 1q52_A 1q51_A
Length = 334
Score = 223 bits (570), Expect = 3e-71
Identities = 69/321 (21%), Positives = 111/321 (34%), Gaps = 59/321 (18%)
Query: 29 KEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL 88
LT I YH + V + NRP+ RNA V+E+ ++ R +V VLL
Sbjct: 49 DGFDDLTDITYHRHVD-DATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLL 107
Query: 89 ------RSLVKDVFCAGADLKHRLTLNE-----------DQIRSFVSTLRYMTCQLESIP 131
FC+G D + R D R+ + + + +P
Sbjct: 108 TGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMP 167
Query: 132 VPVLAVLDGSAYGGGLEMALACDIRVAAS-NVRMGLVETKLAIIPGAGGTQRLPRIVGIP 190
V+ +++G A GGG + + CD+ +A+ R + + G G+ L R VG
Sbjct: 168 KVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQK 227
Query: 191 LAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKR 250
A+E+ + GR + + +G VN + + L+ A +I P A RM K
Sbjct: 228 FAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVG----LQWAAEINAKSPQAQRMLKF 283
Query: 251 SIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVI 310
+ N G + G
Sbjct: 284 AF------------------------------------NLLDDGLVGQQLFAGEATRLAY 307
Query: 311 RTQDRVEGLKSFLGKYKPVYK 331
T + VEG +FL K P +
Sbjct: 308 MTDEAVEGRDAFLQKRPPDWS 328
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.09A {Mycobacterium abscessus}
Length = 256
Score = 220 bits (563), Expect = 5e-71
Identities = 73/288 (25%), Positives = 117/288 (40%), Gaps = 46/288 (15%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R ++ + +NRP ARNA+N + + + A + + ++ ++ FCAG DLK
Sbjct: 14 RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITG-AGGNFCAGMDLK- 71
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
V + R + P++A ++G A GG E+ L+CD+ VA + +
Sbjct: 72 -----AFVSGEAVLSERGLGFTNVPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKF 126
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
G+ E K ++ GAGG RLP + +A EL TG + +A G +N L +
Sbjct: 127 GIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVDDGQALD 186
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
A L +A I NGP+AV KR I + S
Sbjct: 187 TA----LELAAKITANGPLAVAATKRII---------IESASWAPE-------------- 219
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+G + ++D EG K+F K PV++G
Sbjct: 220 ------------EAFAKQGEILMPIFVSEDAKEGAKAFAEKRAPVWQG 255
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, otholog; 2.15A {Mycobacterium avium subsp}
Length = 274
Score = 220 bits (564), Expect = 5e-71
Identities = 58/301 (19%), Positives = 111/301 (36%), Gaps = 58/301 (19%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
+ +NRP A NAL+ ++ E+ A D+ V +++ R+ FC+GA
Sbjct: 18 DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRA-----FCSGA 72
Query: 101 DLKHRLTLNEDQI-------RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALAC 153
D+K + + T ++ PVL ++G G G++
Sbjct: 73 DVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTT 132
Query: 154 DIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR--LVDSTEAKSIG 211
DI +A+ + ++ G R+ R++ +A + G+ + + A +G
Sbjct: 133 DIVIASEQATFFDPHVSIGLVAG-RELVRVSRVLPRSIALRMALMGKHERMSAQRAYELG 191
Query: 212 LVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPG 271
L++ + + A IA+ + N P+AVR + +I
Sbjct: 192 LISEIVEHDRLLERA----HEIADIVNSNAPLAVRGTRLAIL------------------ 229
Query: 272 RDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331
KG E +RV+RT+D EG ++F+ K +P ++
Sbjct: 230 ------KGLNVPLHE-----------AEILAETFRERVLRTEDAAEGPRAFVEKRQPNWQ 272
Query: 332 G 332
Sbjct: 273 C 273
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.40A {Pseudomonas aeruginosa}
Length = 258
Score = 219 bits (561), Expect = 1e-70
Identities = 64/280 (22%), Positives = 101/280 (36%), Gaps = 41/280 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R + + ++R RNA ++ ++ ++ A+ EE RC +L + + F AG DL
Sbjct: 19 RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFA-HGEHFTAGLDLME 77
Query: 105 RLTLNEDQIRSFVST-LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ + P++ + G+ + G+E+ L DI VAA R
Sbjct: 78 LAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTR 137
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
+E I P G T R PR G A I TG D+ EA + L+ +
Sbjct: 138 FAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRLLTEVVEPGEEL 197
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
A L AE IA P+AVR A +S QG G+
Sbjct: 198 ARA----LEYAERIARAAPLAVRAALQSAF---------------------QGRDEGDDA 232
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFL 323
N +I ++D EG+ + +
Sbjct: 233 ALSRVNESLA--------------ALIGSEDVREGVLAMV 258
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural
genomics, riken S genomics/proteomics initiative, RSGI;
1.80A {Thermus thermophilus} SCOP: c.14.1.3
Length = 264
Score = 218 bits (559), Expect = 2e-70
Identities = 62/289 (21%), Positives = 99/289 (34%), Gaps = 44/289 (15%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
RPG++E+ R + NA+ L + + E VR VLLR VF AG
Sbjct: 17 PRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGG-VFSAGGSFG 74
Query: 104 HR--LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
+ + + + R + + P PV+A ++ A G GL +ALA DI V
Sbjct: 75 LIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKG 134
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNP 221
R+ +L + G P +VG+ AK + + EA+ +GLV
Sbjct: 135 TRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEK 194
Query: 222 NQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281
A L +AE +A A+ K ++
Sbjct: 195 VYEKA----LEVAERLAQGPKEALHHTKHAL----------------------------- 221
Query: 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330
N ++ E ++ EGLK+ K P +
Sbjct: 222 -------NHWYRSFLPHFELSLALEFLGFSGKELEEGLKALKEKRPPEF 263
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 216 bits (552), Expect = 2e-69
Identities = 65/288 (22%), Positives = 123/288 (42%), Gaps = 41/288 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ G++ L +NRP+ NA+ L++ + A++ D EVR +LL + F AG DL
Sbjct: 7 QDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGR-AFSAGQDLTE 65
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
D + + + L + P++ ++G A G G+ +AL D+R+AA
Sbjct: 66 FGDRKPD-YEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASF 124
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
++ ++P +G + LPR+VG+ A+EL+ + + EA ++GLV+ + P
Sbjct: 125 TTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVPAEKLME 184
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
A L +A+++A A + K+ + +
Sbjct: 185 EA----LSLAKELAQGPTRAYALTKKLL---------LETYRL----------------- 214
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ E + + +TQD EG+++F K P ++G
Sbjct: 215 ---------SLTEALALEAVLQGQAGQTQDHEEGVRAFREKRPPRFQG 253
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038,
NPPSFA, national project on prote structural and
functional analyses; 2.00A {Geobacillus kaustophilus}
Length = 257
Score = 215 bits (549), Expect = 6e-69
Identities = 72/289 (24%), Positives = 115/289 (39%), Gaps = 43/289 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ + L +NRP NA + E+ A++ D VRCV++ + FCAG DL
Sbjct: 10 KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGR-AFCAGEDLSG 68
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
D S M L + PV+A ++G+A G G+ +ALACD R+ +
Sbjct: 69 VTE-EMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASF 127
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
+ ++P AG LPR+VG A EL G V + EA ++GL + P + +
Sbjct: 128 APAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWEE 187
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
+ AE ++ A+ + KR +
Sbjct: 188 EV----KQFAERLSAMPTKAIGLIKRLL-------------------------------- 211
Query: 285 TENQNREFQGRYS-GMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ + +E E C T D EG+K+F K KP+++G
Sbjct: 212 ----RESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPLFQG 256
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase;
2.04A {Synechocystis SP}
Length = 275
Score = 215 bits (550), Expect = 7e-69
Identities = 80/302 (26%), Positives = 125/302 (41%), Gaps = 51/302 (16%)
Query: 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL-----RSL 91
I+Y+ + GI ++ +NRP RNA V E+ A R D + VLL S
Sbjct: 12 ILYY---KAGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSD 68
Query: 92 VKDVFCAGADLKHR--LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEM 149
K FC+G D R +DQ ++ L + S+P V+A++ G A GGG +
Sbjct: 69 GKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQR-LIRSMPKVVIALVAGYAIGGGHVL 127
Query: 150 ALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKS 209
L CD+ +AA N G K+ G G+ L RIVG A+E+ Y R + EA+
Sbjct: 128 HLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAER 187
Query: 210 IGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHS 269
+G+VNT+ P + + ++ A++I P+A+R K +
Sbjct: 188 MGMVNTVVPVDRLEEEG----IQWAKEILSKSPLAIRCLKAAF----------------- 226
Query: 270 PGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPV 329
N + G+ E G T++ EG ++FL K P
Sbjct: 227 -------------------NADCDGQAGLQELAGNATLLYYMTEEGSEGKQAFLEKRPPD 267
Query: 330 YK 331
+
Sbjct: 268 FS 269
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A
{Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Length = 257
Score = 214 bits (548), Expect = 9e-69
Identities = 49/245 (20%), Positives = 89/245 (36%), Gaps = 11/245 (4%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
G++ + ++ +T +E+ I D E + V+L FC D
Sbjct: 23 DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGP-SFCNEIDFTS 81
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ + + L SI VPV+A ++G E+ + DI +AA +
Sbjct: 82 FNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPV-TNAPEIPVMSDIVLAAESATF 140
Query: 165 G-LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
I+PG G P ++G + + TG+ +D+ A G VN + +
Sbjct: 141 QDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELL 200
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
A +A IA +A R A++ + R + R ++ S G + +
Sbjct: 201 PRA----WELARGIAEKPLLARRYARKVLT---RQLR-RVMEADLSLGLAHEALAAIDLG 252
Query: 284 GTENQ 288
Q
Sbjct: 253 MESEQ 257
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase,
lyase, crotonase, biocatalysis, beta-diketone; 1.46A
{Anabaena SP} PDB: 2j5s_A* 2j5g_D
Length = 263
Score = 214 bits (547), Expect = 1e-68
Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 8/211 (3%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
+ GI+E+ M+ + E A I D + R V+L D + A D
Sbjct: 30 DENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTG-SGDAWMAEIDFP 88
Query: 104 HRLTL-NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ N + + + L I VPV++ ++G+A E L DI +A+ N
Sbjct: 89 SLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHS-EYILTTDIILASENT 147
Query: 163 RM-GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNP 221
+ I+PG G P +G+ + ++T + + +A + +V+ + PQ+
Sbjct: 148 VFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSK 207
Query: 222 NQNAAYLASLRIAEDIAHNGPIAVRMAKRSI 252
A IA +A + +R + ++
Sbjct: 208 LMERA----WEIARTLAKQPTLNLRYTRVAL 234
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.45A {Mycobacterium avium subsp}
Length = 276
Score = 213 bits (546), Expect = 3e-68
Identities = 50/288 (17%), Positives = 96/288 (33%), Gaps = 54/288 (18%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
+ + +NRP + N++N L + + + D R ++ R+ F AG
Sbjct: 35 DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRA-----FSAGG 89
Query: 101 DLKH--RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVA 158
D + L+ + D + R + + +PV+A ++G A G G + DI
Sbjct: 90 DFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYI 149
Query: 159 ASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218
A N + ++ ++ GG P + + LAKE TG + + A +GL N +
Sbjct: 150 AENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVAD 209
Query: 219 QNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSK 278
++ A+ I AV KR +
Sbjct: 210 D------PVAEAIACAKKILELPQQAVESTKRVL-------------------------- 237
Query: 279 GGESKGTENQNREFQGRY-SGMEWEGICYDRVIRTQDRVEGLKSFLGK 325
N + + +++ + T+D + K
Sbjct: 238 ----------NIHLERAVLASLDYALSAESQSFVTEDFRSIVTKLADK 275
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics;
1.58A {Legionella pneumophila subsp}
Length = 268
Score = 212 bits (542), Expect = 9e-68
Identities = 70/288 (24%), Positives = 116/288 (40%), Gaps = 43/288 (14%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
+ L MNR NA + L+ E+ +++ D VR ++L++ K F AGADL
Sbjct: 13 KVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGK-HFSAGADLTWMQ 71
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
E++ L + + P P +A++ G+A+GGG +A ACDI +A+++ R
Sbjct: 72 SMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSAR 131
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
E KL +IP A + + R +G AK L + + D+T A S+ LV P +
Sbjct: 132 FCFSEVKLGLIP-AVISPYVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLL 190
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
L+ A I++N P AV+ +K+
Sbjct: 191 EFT----LKYASQISNNAPEAVKNSKQLA--------QYVANKKIDEE------------ 226
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331
+ + + + EGLK+FL K P +
Sbjct: 227 --------------LVRYTASLIAHKRVSDEGQEGLKAFLNKEIPNWN 260
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A
{Mycobacterium abscessus} PDB: 3qka_A
Length = 262
Score = 212 bits (541), Expect = 1e-67
Identities = 74/289 (25%), Positives = 109/289 (37%), Gaps = 44/289 (15%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ + +NRP ARNA++ +L A D E +L FCAGADLK
Sbjct: 18 AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNG-TFCAGADLKA 76
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
T +++ M + PV+A + G A GG+E+AL CD+RV + +
Sbjct: 77 MGTDRGNEL--HPHGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVL 134
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
G+ + + GGT RLPR++G A +LI TGR V + EA IGLVN + + +
Sbjct: 135 GVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQARE 194
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
AA +A +IA VR + S E
Sbjct: 195 AA----ETLAAEIAAFPQQCVRADRDSA---------IAQWGMA------------EEAA 229
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333
+N+ + +EG F GV
Sbjct: 230 LDNEFGSI----------------ERVATEALEGAGRFAAGEGRHGAGV 262
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 210 bits (538), Expect = 2e-67
Identities = 58/286 (20%), Positives = 112/286 (39%), Gaps = 46/286 (16%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
++ + ++RP+ NA++ ++EE+ + DE VR VLL + FC+G DL
Sbjct: 15 AVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRA-FCSGGDLT--- 70
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
+ + S+P PV+A + G+A G G +ALACD+ VAA L
Sbjct: 71 ---GGDTAGAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQL 127
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
T++ ++P G + LP ++G + T + + A G+++ +T + ++
Sbjct: 128 AFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVL 187
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTE 286
+ ++ +A KR++ +T +
Sbjct: 188 ----TDVLRSVSGGPTLAFGWTKRALA-----------AATLAELEP------------- 219
Query: 287 NQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E ++ T D EG ++F + P ++G
Sbjct: 220 -----------VQAIEAEGQLALVETADFREGARAFRERRTPNFRG 254
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET:
BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A*
1nzy_B*
Length = 269
Score = 210 bits (538), Expect = 4e-67
Identities = 65/298 (21%), Positives = 109/298 (36%), Gaps = 53/298 (17%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
G+ E+ + P+ RNAL+ ++E+ A+ D+ V V++ + FCAG
Sbjct: 10 EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDA-----FCAGF 64
Query: 101 DLKHRLTLN-----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDI 155
L+ D R M ++ + PVLA ++G A GGGL ++LA D+
Sbjct: 65 YLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDM 124
Query: 156 RVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNT 215
+ A + + + I + L RIVG+ A EL+ T R + EAK GLV+
Sbjct: 125 AICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSR 184
Query: 216 LTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQ 275
+ P++ + A ++A ++A MAK
Sbjct: 185 VYPKDEFREVA----WKVARELAAAPTHLQVMAKERFH---------------------- 218
Query: 276 GSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKGV 333
G E+E + + L FL ++ V
Sbjct: 219 -------AGWMQ------PVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQV 263
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative; 2.05A
{Streptomyces coelicolor A3}
Length = 279
Score = 210 bits (538), Expect = 5e-67
Identities = 65/294 (22%), Positives = 112/294 (38%), Gaps = 47/294 (15%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
G+ + + RP NAL ++ + + VR ++L + FC+G D+
Sbjct: 24 TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGR-GFCSGGDVDE 82
Query: 105 R----LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
L+++ ++ F + + P PV+A L G A G G +ALA D RVA
Sbjct: 83 IIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADP 142
Query: 161 NVRMGLVETKLAIIPG-AGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
+ R + T++ + G G LPR+VG+ A L+ G V + EA+ IGL++ LT +
Sbjct: 143 STRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEE 202
Query: 220 NPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKG 279
AA +A +A +A K +
Sbjct: 203 GRADEAA----RTLARRLADGPALAHAQTKALL--------------------------- 231
Query: 280 GESKGTENQNREFQGRY-SGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E + +E + ++ +D E +F K P ++G
Sbjct: 232 ---------TAELDMPLAAAVELDASTQALLMTGEDYAEFHAAFTEKRPPKWQG 276
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium marinum M}
Length = 233
Score = 209 bits (534), Expect = 5e-67
Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 7/207 (3%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
I + M+ + N L T+ + + A++A D V +++ + VF G DLK
Sbjct: 14 AIGVIRMDDGKV-NVLGPTMQQALNEAIDAADRDN-VGALVIAGNHR-VFSGGFDLKVLT 70
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
+ + ++ +L S P PV+ G A G + + D RVAA +
Sbjct: 71 SGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQA 130
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
E + + + L + ++ + A + G ++ ++ + A
Sbjct: 131 NEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISLPEVVLSRA 190
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSID 253
A + A A K
Sbjct: 191 ----EEAAREFAGLNQQAHNATKLRAR 213
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 209 bits (534), Expect = 2e-66
Identities = 69/315 (21%), Positives = 117/315 (37%), Gaps = 53/315 (16%)
Query: 21 PNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGD 80
P++ E R I Y I + +NRP+A NA N L++E+ A D
Sbjct: 6 PSWRRPSRPEQRTEMYIDYD---VSDRIATITLNRPEAANAQNPELLDELDAAWTRAAED 62
Query: 81 EEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY-----MTCQLESIPVPVL 135
+V ++LR+ K F AG DL+ + + F+ + + ++P P +
Sbjct: 63 NDVSVIVLRANGK-HFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSI 121
Query: 136 AVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKEL 195
A + G GGL + CD+ +AA + + I G +G AKE+
Sbjct: 122 AAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI--GGVEYHGHTWELGPRKAKEI 179
Query: 196 IYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLAS--LRIAEDIAHNGPIAVRMAKRSID 253
++TGR + + E G+VN + P L + +A +IA P A+R AKR++
Sbjct: 180 LFTGRAMTAEEVAQTGMVNRVVP------RDRLDAETRALAGEIAKMPPFALRQAKRAV- 232
Query: 254 GPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQ 313
NQ + QG Y+ ++ +
Sbjct: 233 ---------------------------------NQTLDVQGFYAAIQSVFDIHQTGHGNA 259
Query: 314 DRVEGLKSFLGKYKP 328
V G + +
Sbjct: 260 MSVSGWPVLVDIEEM 274
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Length = 298
Score = 209 bits (534), Expect = 4e-66
Identities = 66/301 (21%), Positives = 101/301 (33%), Gaps = 57/301 (18%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
G+ + NR NA L A++ D +R ++L R FCAGA
Sbjct: 37 PGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRG-----FCAGA 91
Query: 101 DLKHR--------LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALA 152
L + + PV+A ++G G GL AL
Sbjct: 92 YLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALM 151
Query: 153 CDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGL 212
CD+R AA+ + V + +I G + LPR+ +A +L+ +GR + EA +GL
Sbjct: 152 CDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGL 211
Query: 213 VNTLTPQNPNQNAAYLASLRIAEDIAHNG-PIAVRMAKRSIDGPGRGTQYRDGQSTHSPG 271
V + A L AEDIA P ++ + KR + Y D
Sbjct: 212 VKEVVTPEQLMPRA----LEYAEDIARYCSPSSMAVIKRQV--------YGDATRDVV-- 257
Query: 272 RDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331
+ + D +EG+ SFL K P +
Sbjct: 258 -------------------------EATSHAEVLLREAMPRPDVIEGIVSFLEKRPPQFP 292
Query: 332 G 332
Sbjct: 293 S 293
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
marinum}
Length = 256
Score = 207 bits (530), Expect = 4e-66
Identities = 59/282 (20%), Positives = 96/282 (34%), Gaps = 41/282 (14%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ L +NRP+A NA N L + A+ D +V VLL + F AG DL
Sbjct: 15 RVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGR-GFSAGTDLAEMQ 73
Query: 107 TLNEDQIRSFVST-LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
D S R + L P P++ ++G G G + D+ +S R+
Sbjct: 74 ARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLK 133
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
T L + P A + LP++VG A L+ + +D+ EA +GLV +
Sbjct: 134 CPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEELLPE 193
Query: 226 AYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGT 285
A R AE +A ++ K ++ +
Sbjct: 194 A----RRHAEILAAKPISSLMAVKHTMV-----------------------------EPN 220
Query: 286 ENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYK 327
Q E + ++ Q L F + +
Sbjct: 221 RAQIAA------ASARENAHFAELMGAQANAAALADFTDRRR 256
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics,
structural genomics consortium, SGC, unknown function;
1.90A {Homo sapiens} PDB: 2fw2_A
Length = 261
Score = 207 bits (529), Expect = 6e-66
Identities = 45/282 (15%), Positives = 95/282 (33%), Gaps = 45/282 (15%)
Query: 53 MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL----TL 108
+ N+LN ++ E+ +A+ D+ + VLL + V VFC G D + +
Sbjct: 21 STKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSA-VGSVFCCGLDFIYFIRRLTDD 78
Query: 109 NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVE 168
+ + +R P++ ++G A G G + CD+ A
Sbjct: 79 RKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPY 138
Query: 169 TKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYL 228
T P T P+I+G A E++ +GR + + EA GLV+ +
Sbjct: 139 TTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEV-- 196
Query: 229 ASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQ 288
+ +++A P+ + +K + + +
Sbjct: 197 --MVRIKELASCNPVVLEESKALVR-----------------------------CNMKME 225
Query: 289 NREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330
+ E E ++ + ++ + +L + +
Sbjct: 226 LEQ------ANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF 261
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas
campestris PV} PDB: 3m6m_A
Length = 305
Score = 204 bits (521), Expect = 3e-64
Identities = 52/292 (17%), Positives = 98/292 (33%), Gaps = 41/292 (14%)
Query: 44 ERPGIVELCMNRPQA----RNALNATLVEEILTAVEAI----RGDEEVRCVLLRSLVKDV 95
+ + + M+ A R + LV++I + + ++ + DV
Sbjct: 38 PQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDV 97
Query: 96 FCAGADLKHRLTLNEDQIRSFVSTLRYMTC-------QLESIPVPVLAVLDGSAYGGGLE 148
F G DL L + R+ + +A++ G+A GGG E
Sbjct: 98 FNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFE 157
Query: 149 MALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAK 208
AL+C +A V MGL E + PG G + + + LA++++ G L + +
Sbjct: 158 AALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLL 217
Query: 209 SIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTH 268
+GLV+ + P+ +A++ + P A ++ +
Sbjct: 218 GMGLVDRVVPR-----GQGVAAVEQVIRESKRTPHAWAAMQQVRE--------------- 257
Query: 269 SPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLK 320
+ + E DR++R Q R GL
Sbjct: 258 ------MTTAVPLEEMMRITEIWVDTAMQLGEKSLRTMDRLVRAQSRRSGLD 303
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 207 bits (528), Expect = 9e-64
Identities = 63/305 (20%), Positives = 103/305 (33%), Gaps = 65/305 (21%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLR--------SLVKDVF 96
R G+ L M R NA + V+++ TAV+ D VR LLR K VF
Sbjct: 174 RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVF 233
Query: 97 CAGADLKHRLTLNEDQIRSFVSTLRYMTCQ----------------LESIPVPVLAVLDG 140
AG +LK+ + + + I P +A +DG
Sbjct: 234 SAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDG 293
Query: 141 SAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGR 200
A GGG ++ L D +A+S+ L K IIPG RL R G +++++I GR
Sbjct: 294 FAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPG-AANLRLGRFAGPRVSRQVILEGR 352
Query: 201 LVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQ 260
+ + E ++ LV+ + + A R + + +A R D G +
Sbjct: 353 RIWAKEPEARLLVDEVVEPDELDAAI----ERSLTRLDGDAVLANRRMLNLADESPDGFR 408
Query: 261 YRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLK 320
M + + D ++ +
Sbjct: 409 A------------------------------------YMAEFALMQALRLYGHDVIDKVG 432
Query: 321 SFLGK 325
F G+
Sbjct: 433 RFGGR 437
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
PSI-2, protein structure initiative; 2.50A {Pseudomonas
syringae PV}
Length = 232
Score = 198 bits (505), Expect = 1e-62
Identities = 38/208 (18%), Positives = 77/208 (37%), Gaps = 10/208 (4%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G+ L +N + NA++ ++ A++ D V++ + G DLK
Sbjct: 15 GVATLTLNNGKV-NAISPDVIIAFNAALDQAEKDR--AIVIVTGQPG-ILSGGYDLKVMT 70
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS-NVRMG 165
+ E I V+ + ++ S P P++ G A G + L+ D R+ + +G
Sbjct: 71 SSAEAAIN-LVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIG 129
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNA 225
L E ++ + G + + + + D A + G ++ + Q A
Sbjct: 130 LNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDKVVSVEELQGA 189
Query: 226 AYLASLRIAEDIAHNGPIAVRMAKRSID 253
A L +A + A + K +
Sbjct: 190 A----LAVAAQLKKINMNAHKKTKLKVR 213
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS;
acetyltransferase, structural genomics, structural
genomics consortium, SGC, unknown function; 2.28A {Homo
sapiens} SCOP: c.14.1.3
Length = 291
Score = 196 bits (500), Expect = 4e-61
Identities = 49/299 (16%), Positives = 97/299 (32%), Gaps = 54/299 (18%)
Query: 47 GIVELC-MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
G ++ R +NALN +++EI+ A+ + D+ + VL + VFC G D +
Sbjct: 32 GFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADD-SKLVLFSA-AGSVFCCGLDFGYF 89
Query: 106 LTL----NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
+ V T++ P++ ++G A G G + CD+ A
Sbjct: 90 VKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK 149
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNP 221
T P + P+++G A E++ GR + + EA + GLV+ +
Sbjct: 150 AWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGT 209
Query: 222 NQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281
+ +++A PI + K +
Sbjct: 210 FTQEV----MIQIKELASYNPIVLEECKALVR---------------------------- 237
Query: 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGL--------KSFLGKYKPVYKG 332
+ + + E E ++ + +E + K+ K
Sbjct: 238 -CNIKLELEQ------ANERECEVLRKIWSSAQGIESMLKIPLLGYKAAFPPRKTQNDQ 289
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH;
polyketide synthase, enoyl COA hydratase,isomerase;
2.32A {Bacillus subtilis}
Length = 267
Score = 195 bits (498), Expect = 4e-61
Identities = 46/288 (15%), Positives = 88/288 (30%), Gaps = 47/288 (16%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--H 104
+ + +RP+A N +N TL+EE L + V V+L L + VFC GAD + +
Sbjct: 16 SVCYITFHRPEANNTINDTLIEECLQVLNQCE-TSTVTVVVLEGLPE-VFCFGADFQEIY 73
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ + S L + +L++ P ++ + G GGL A DI +A
Sbjct: 74 QEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASF 133
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
L E + P A L R +G A + + + EA GL++
Sbjct: 134 SLSELLFGLYP-ACVLPFLIRRIGRQKAHYMTLMTKPISVQEASEWGLIDAFDA------ 186
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKG 284
+ + + + + K+ +
Sbjct: 187 ESDVLLRKHLLRLRRLNKKGIAHYKQFMSSLDHQVS------------------------ 222
Query: 285 TENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
+ G+ ++ + ++
Sbjct: 223 ------------RAKATALTANQDMFSDPQNQMGIIRYVETGQFPWED 258
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural
genomics center for infectious lyase; 1.55A
{Mycobacterium smegmatis}
Length = 286
Score = 195 bits (498), Expect = 5e-61
Identities = 70/289 (24%), Positives = 112/289 (38%), Gaps = 42/289 (14%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
+ G+V L +NRPQA NAL+ ++ + A + DE VR V+L + K FCAG DLK
Sbjct: 32 DERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGK-AFCAGHDLK 90
Query: 104 -HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
R + + + + ++ +P PV+A + G A G ++ CD+ VA +
Sbjct: 91 EMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDA 150
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
R + + + G L R VG A E++ TG V + +AK +GLVN +
Sbjct: 151 RFAVSGINVGLFCSTPGVA-LSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAPKAL 209
Query: 223 QNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282
+ + I AV M K YR ++
Sbjct: 210 DDEI----EAMVSKIVAKPRAAVAMGKALF--------YRQIETDIE------------- 244
Query: 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYK 331
S G + +EG+ +FL K +P +
Sbjct: 245 --------------SAYADAGTTMACNMMDPSALEGVSAFLEKRRPEWH 279
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for
infectious disease, S non-pathogenic mycobacterium
species, ortholog; 1.50A {Mycobacterium avium}
Length = 267
Score = 193 bits (493), Expect = 2e-60
Identities = 53/213 (24%), Positives = 81/213 (38%), Gaps = 17/213 (7%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
+ L +N P RNAL+ LV ++ + D VR V+L FCAGADL
Sbjct: 20 PVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGG-TFCAGADLSEAG 78
Query: 104 --HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
+ D + + + +PV+A +DG GG + ACDI VA
Sbjct: 79 SGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPR 138
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNP 221
L E ++ + P LP++ A TG D+ A+ IGL+
Sbjct: 139 SSFALTEARIGVAPAIISLTLLPKL-SARAAARYYLTGEKFDARRAEEIGLITMAAED-- 195
Query: 222 NQNAAYL--ASLRIAEDIAHNGPIAVRMAKRSI 252
L A ++ D+ P + +K
Sbjct: 196 ------LDAAIDQLVTDVGRGSPQGLAASKALT 222
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase
superfamily, dimer of trimers, PSI-2, NYSGXRC,
structural genomics; 2.32A {Ruegeria pomeroyi}
Length = 263
Score = 192 bits (490), Expect = 5e-60
Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 13/215 (6%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
G++ L + R + L+ ++ + A+ GD+ V +++ + +FCAG DLK
Sbjct: 13 LSEGVLTLTLGRAP-AHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGR-IFCAGHDLK 70
Query: 104 --HRLTLNEDQIRSFVSTLR----YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
R + D+ R+FV+ L + L P P +A+++G A GL++ ACD+
Sbjct: 71 EIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAY 130
Query: 158 AASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLT 217
A+ R L + + R++G E+ TG D+ A + GL+N +
Sbjct: 131 ASPAARFCLPGVQNGGFCTTPAV-AVSRVIGRRAVTEMALTGATYDADWALAAGLINRIL 189
Query: 218 PQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSI 252
P+ +A +A +R ++
Sbjct: 190 PEAALATHV----ADLAGALAARNQAPLRRGLETL 220
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty
acid metabolism, transit peptide, lipid Met crontonase,
mitochondrion, CAsp; 2.3A {Homo sapiens}
Length = 287
Score = 192 bits (491), Expect = 7e-60
Identities = 60/323 (18%), Positives = 122/323 (37%), Gaps = 46/323 (14%)
Query: 12 PARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEIL 71
+ N GR+ ++ ++ + GI + ++ P+ RN L+ +++ +
Sbjct: 7 HSSGVDLGTENLYFQSMGAGRRESEPRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQ 66
Query: 72 TAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--HRLTLNEDQIRSFVSTLRYMTCQLES 129
+ + +++ +++ + VF +G DLK + F + + M + +
Sbjct: 67 SDILHDADSNDLKVIIISAEGP-VFSSGHDLKELTEEQGRDYHAEVFQTCSKVMM-HIRN 124
Query: 130 IPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI 189
PVPV+A+++G A G ++ +CDI VA+ + + G L R V
Sbjct: 125 HPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPR 183
Query: 190 PLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAK 249
+A E+++TG + + EA GL++ + P+ Q +RIA IA V + K
Sbjct: 184 KVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEET----MRIARKIASLSRPVVSLGK 239
Query: 250 RSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQ-GRYSGMEWEGICYDR 308
+ ++ +
Sbjct: 240 ATF------------------------------------YKQLPQDLGTAYYLTSQAMVD 263
Query: 309 VIRTQDRVEGLKSFLGKYKPVYK 331
+ +D EG+ +FL K KPV+
Sbjct: 264 NLALRDGQEGITAFLQKRKPVWS 286
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 191 bits (487), Expect = 2e-59
Identities = 55/287 (19%), Positives = 106/287 (36%), Gaps = 45/287 (15%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI ++ NRP+ +NA+N + EI+ A++A D+ + VL + D + +G DL +
Sbjct: 35 GITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGN--GDYYSSGNDLTNFT 92
Query: 107 TLN----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ E++ ++ LR P P++AV++G A G + + D A+
Sbjct: 93 DIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRA 152
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
+ L P + P+I+ A E++ G+ + + EA + GLV + P +
Sbjct: 153 TFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTF 212
Query: 223 QNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGES 282
Q + A P A+R++K I R
Sbjct: 213 QKEV----WTRLKAFAKLPPNALRISKEVIRKREREK----------------------- 245
Query: 283 KGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPV 329
++ E + + + +FL + +
Sbjct: 246 ------------LHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSKL 280
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold,
inter-trimer contacts; 2.10A {Saccharomyces cerevisiae}
SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Length = 280
Score = 188 bits (480), Expect = 2e-58
Identities = 38/227 (16%), Positives = 72/227 (31%), Gaps = 15/227 (6%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + P NAL + +E + +V +++S F +GAD K
Sbjct: 18 PFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQS-SGRFFSSGADFKGIA 76
Query: 107 TLNEDQ-----------IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDI 155
D + +FV+ Y+T ++ L+G A G + CDI
Sbjct: 77 KAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDI 136
Query: 156 RVAAS-NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
+ + V + L +I G T LP G E + + G ++
Sbjct: 137 VYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFIS 196
Query: 215 TLTPQNPNQNAAYLASL--RIAEDIAHNGPIAVRMAKRSIDGPGRGT 259
+ A+ A + + E + + K+ +
Sbjct: 197 KNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNHIDA 243
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving,
burkholderia xenovorans LB400 crotonase; 1.50A
{Burkholderia xenovorans}
Length = 556
Score = 192 bits (490), Expect = 4e-57
Identities = 60/254 (23%), Positives = 91/254 (35%), Gaps = 21/254 (8%)
Query: 22 NYST-SVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGD 80
Y +S G T I + + N+ + + E+ A++ IR +
Sbjct: 19 QYKHWKLSFNGPVATLGI-----DIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFE 73
Query: 81 E-EVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE----SIPVPVL 135
EVR V+L SL VFC+GA++ +F LE + L
Sbjct: 74 HPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFL 133
Query: 136 AVLDGSAYGGGLEMALACDIRVAA--SNVRMGLVETK-LAIIPGAGGTQRL--PRIVGIP 190
A ++G+ GGG E+ALACD + + L E L ++PG GG R+ R V
Sbjct: 134 AAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHD 193
Query: 191 LAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKR 250
A V AK+ LV+ + N A A ++A
Sbjct: 194 RADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAI----QARALELAAQSDRPAHAQGV 249
Query: 251 SIDGPGRGTQYRDG 264
+ T DG
Sbjct: 250 PLT-RIERTDREDG 262
Score = 59.6 bits (144), Expect = 5e-10
Identities = 38/206 (18%), Positives = 71/206 (34%), Gaps = 16/206 (7%)
Query: 26 SVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDE-EVR 84
++ + R T E P ++ + N E A+ ++R +E V
Sbjct: 271 TIDRAKRIATFTAKAPQTEPPASIDAIVA--AGANWWPLKFAREFDDAILSMRTNELAVG 328
Query: 85 CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD-GSAY 143
+ R+ AD + +R + LR +++ + A+++ GS +
Sbjct: 329 TWVFRTEGDARHLLAADASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCF 388
Query: 144 GGGL-EMALACDIRV-------AASNVRMGLVETKLAIIPGAGGTQRLP-RIVGIPLAKE 194
G E+A A D + L E + P RL R +
Sbjct: 389 AGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYPMVTHQSRLARRFYEETEPLD 448
Query: 195 LIY--TGRLVDSTEAKSIGLVNTLTP 218
+ G+ + EA+ +GLV T +P
Sbjct: 449 AVRSRIGQAIKPVEAERLGLV-TASP 473
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium smegmatis} PDB:
3njb_A
Length = 333
Score = 183 bits (465), Expect = 2e-55
Identities = 58/318 (18%), Positives = 100/318 (31%), Gaps = 68/318 (21%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ + NRP+ NA+ A E+ VE D +V +L+ + FCAG DL
Sbjct: 42 TDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEG-FCAGFDLSA 100
Query: 105 R------------------------------LTLNEDQIRSFVSTLRYMTCQLESIPVPV 134
+ +S L P
Sbjct: 101 YAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPT 160
Query: 135 LAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKE 194
+ + G GG ++AL D +AA++ ++G ++ +P AG +G AK
Sbjct: 161 VVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKR 217
Query: 195 LIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYL--ASLRIAEDIAHNGPIAVRMAKRSI 252
L++TG + +A GL A L + R+ E IA + MAK +
Sbjct: 218 LLFTGDCITGAQAAEWGLAVEAPD------PADLDARTERLVERIAAMPVNQLIMAKLAC 271
Query: 253 DGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRT 312
+ + + G + + F G + EG +
Sbjct: 272 N-----------TALLNQGVATS----------QMVSTVFDGI-ARHTPEGHAF----VA 305
Query: 313 QDRVEGLKSFLGKYKPVY 330
R G + + +
Sbjct: 306 TAREHGFREAVRRRDEPM 323
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 181 bits (461), Expect = 7e-52
Identities = 71/221 (32%), Positives = 106/221 (47%), Gaps = 23/221 (10%)
Query: 47 GIVELCMNRPQAR-NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK-- 103
GIVEL + N N + E+ AV+AI+ D V+ V++ S KDVF GAD+
Sbjct: 16 GIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEF 74
Query: 104 -HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
L + ++ + + E + VP +A ++G A GGGLEM LA D RV A +
Sbjct: 75 VENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSA 134
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
++GL E KL I PG GGT RLPR++G+ A E I +G+ + +A + V+ + +
Sbjct: 135 KIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKL 194
Query: 223 QNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRD 263
A A+ + KR+I G R
Sbjct: 195 GAA------------------ALDLIKRAISGELDYKAKRQ 217
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 179 bits (456), Expect = 3e-51
Identities = 56/176 (31%), Positives = 97/176 (55%), Gaps = 5/176 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
G+ + + P N+L+ ++ + + E +V+ +++ K F G D+
Sbjct: 17 GVAVITLINPPV-NSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFG 74
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
N + ++ ++ +T LE+ P +A +DG A GGGLE+A+AC R++A +
Sbjct: 75 EMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQ 134
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
+GL E +L +IPG GGTQRLPR+VG+ A E+I T + V + E S+GL++ + P
Sbjct: 135 LGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPP 190
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 179 bits (455), Expect = 5e-51
Identities = 60/217 (27%), Positives = 106/217 (48%), Gaps = 13/217 (5%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + + P NA++ T++ E+ ++ D V+ +++ FCAGAD+
Sbjct: 30 SLAMIRLCNPPV-NAVSPTVIREVRNGLQKAGSDHTVKAIVICG-ANGNFCAGADIHGFS 87
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
L + +++ PVLA + G A GGGLE+AL C R+A + R+GL
Sbjct: 88 AFTPGL------ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGL 141
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
E L I+PGA GTQ LPR+VG+P+A +LI +G+ + + EA +G+++ + +P + A
Sbjct: 142 PEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEA- 200
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRD 263
++ A+ I R+ + +
Sbjct: 201 ----IKFAQKIIDKPIEPRRIFNKPVPSLPNMDSVFA 233
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A,
beta-hydroxyisobutyryl acid, querceti structural
genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Length = 363
Score = 98.9 bits (247), Expect = 1e-23
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 6/175 (3%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
G++ L NRP+ NAL ++ +I ++ D E ++++ FCAG D++
Sbjct: 17 GVITL--NRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVIS 74
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ F + + S P +A++ G GGG+ +++ RVA
Sbjct: 75 EAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCL 134
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTP 218
+ ET + + P GG LPR+ G L L TG + + G+
Sbjct: 135 FAMPETAIGLFPDVGGGYFLPRLQG-KLGYFLALTGFRLKGRDVYRAGIATHFVD 188
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 2.30A {Shewanella oneidensis}
Length = 407
Score = 99.4 bits (248), Expect = 1e-23
Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 10/186 (5%)
Query: 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK 93
+ Q + S + G+V L N +A NAL+ +V + + + D + CV+L +
Sbjct: 40 VFQTLATASGKLVGVVTL--NVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGE 97
Query: 94 DVFCAGADLK--HRLTLNEDQ-----IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGG 146
FCAG D++ + ++ + F + L + PVL DG GGG
Sbjct: 98 KAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGG 157
Query: 147 LEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTE 206
L + +V R+ + E + + P GG+ L R+ G + L T +++ +
Sbjct: 158 LGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG-KMGLFLGLTAYHMNAAD 216
Query: 207 AKSIGL 212
A +GL
Sbjct: 217 ACYVGL 222
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 6e-05
Identities = 44/266 (16%), Positives = 76/266 (28%), Gaps = 107/266 (40%)
Query: 64 ATLVEEILTAVEAIRGDEEVRCVLLRSLVKD------VFCAGADLKHRLTLNEDQ----- 112
LV +++ L L++ VF G ++ L +
Sbjct: 181 HVLVGDLIKFSAE----------TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 113 -IRSFVS--------TLRYM-TCQLESI-PVPVLAVLDG-SAYGGGLEMALACDIRVAAS 160
+ +S Y+ T +L P + + L G + + GL A+A +A +
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA----IAET 286
Query: 161 --------NVRMGLVETKLAIIPGAGGTQRLPRIV--------------GIP---LA--- 192
+VR + T L I G + P G+P L+
Sbjct: 287 DSWESFFVSVRKAI--TVLFFI-GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 193 ---KELIYTGRLVDSTEAK-------SIGLVNTLTPQN------PNQNAAYLASLRIAED 236
+++ V+ T + I LVN +N P SL
Sbjct: 344 LTQEQVQ---DYVNKTNSHLPAGKQVEISLVN--GAKNLVVSGPP-------QSLY---- 387
Query: 237 IAHNGPIAVRMAKRSIDGPGRGTQYR 262
+ + R P Q R
Sbjct: 388 -------GLNLTLRKAKAPSGLDQSR 406
Score = 35.8 bits (82), Expect = 0.021
Identities = 52/296 (17%), Positives = 84/296 (28%), Gaps = 129/296 (43%)
Query: 20 WPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQ---ARNALNATLVEEILTAVE- 75
W ++ SV K L I G+ R +L +++E+ L E
Sbjct: 289 WESFFVSVRKAITVLFFI---------GV------RCYEAYPNTSLPPSILEDSLENNEG 333
Query: 76 ------AIRG--DEEVRCVLLR-------------SLV--KDVF-CAG--ADLKH-RLTL 108
+I E+V+ + + SLV +G L LTL
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 109 -------NEDQIR--------SFVST-LR--------YMTCQLESIP------------- 131
DQ R F + L + + I
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 132 ---VPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIP------------- 175
+PV DGS D+RV + ++ +V+ + +P
Sbjct: 454 DIQIPVYDTFDGS------------DLRVLSGSISERIVDC-IIRLPVKWETTTQFKATH 500
Query: 176 ----GAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAY 227
G GG L + T R D T + I + TL NP+ + +
Sbjct: 501 ILDFGPGGASGLGVL-----------THRNKDGTGVRVI-VAGTLDI-NPDDDYGF 543
Score = 29.6 bits (66), Expect = 1.6
Identities = 44/254 (17%), Positives = 79/254 (31%), Gaps = 69/254 (27%)
Query: 108 LNEDQIRSFVSTLRYMTCQLE-SIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
++ R TL + + LE + VP +++ AS ++
Sbjct: 1 MDAYSTRPL--TLSHGS--LEHVLLVPT------ASF-------------FIASQLQ--- 34
Query: 167 VETKLAIIPGAGGTQRL-----PRIVGIPL-AKELIYTGRLVDSTEAKSIGLV------- 213
E I+P T+ P L K L Y LV+ ++ V
Sbjct: 35 -EQFNKILPEP--TEGFAADDEPTTP-AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 214 ---NTLTPQNPNQNAAYLASLRIAEDIAHNGPI-----AVRMAKRSIDGPGRGTQYRDGQ 265
L + + AA L + I A MAKR D +R
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 266 STHSP-----GRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLK 320
++ G GQG+ T++ E + Y + + D + + + + L
Sbjct: 151 EGNAQLVAIFG--GQGN-------TDDYFEELRDLYQ--TYHVLVGDLIKFSAETLSELI 199
Query: 321 SFLGKYKPVY-KGV 333
+ V+ +G+
Sbjct: 200 RTTLDAEKVFTQGL 213
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.058
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 22/46 (47%)
Query: 26 SVSK-EGR-KLTQIIYHNSPER-PGIVELCMNRPQARNALNATLVE 68
++ K + KL Y + + P + A+ AT +E
Sbjct: 21 ALKKLQASLKL----Y--ADDSAPAL------------AIKAT-ME 47
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 29.7 bits (67), Expect = 1.4
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 187 VGIPLAKELIYTGRLVD--STEAKSIGLVNTLTPQNPN 222
IP KE + D AKSIG VNT+ + +
Sbjct: 291 CTIPH-KEAAL--QCCDEVDPLAKSIGAVNTILRRKSD 325
>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase,
patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A
Length = 360
Score = 28.2 bits (63), Expect = 3.5
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 130 IPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
I +P AV+ G+ + LA I +A
Sbjct: 153 INMPQDAVIRGNYDDVMSPLNLARAIDLALEL 184
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase,
homodimer, rossman fold, 4 domai L-histidine
biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A
{Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A*
1kar_A
Length = 434
Score = 27.1 bits (61), Expect = 8.2
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVR 84
II NS +L M + + V +IL V+A RGDE +R
Sbjct: 3 FNTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKA-RGDEALR 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.395
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,062,618
Number of extensions: 313604
Number of successful extensions: 922
Number of sequences better than 10.0: 1
Number of HSP's gapped: 677
Number of HSP's successfully gapped: 142
Length of query: 333
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 239
Effective length of database: 4,077,219
Effective search space: 974455341
Effective search space used: 974455341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)