RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy503
(333 letters)
>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 260
Score = 162 bits (410), Expect = 9e-49
Identities = 86/296 (29%), Positives = 123/296 (41%), Gaps = 42/296 (14%)
Query: 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
II + + + +NRP+A NAL L+EE+ A+E D V ++L K
Sbjct: 6 IITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFA 65
Query: 97 CAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
+ + N + + I PV+A ++G A GGG E+A+ CDI
Sbjct: 66 AGADIKEMQ---NRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDII 122
Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTL 216
A + G E L IPGAGGTQRL R VG LA E++ TG + + +AK GLV+ +
Sbjct: 123 YAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKI 182
Query: 217 TPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQG 276
P A + AE IA+N I V MAK S++
Sbjct: 183 FPVETLVEEAI----QCAEKIANNSKIIVAMAKESVN----------------------- 215
Query: 277 SKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E E G + E + T DR EG+ +F+ K K +K
Sbjct: 216 ------AAFEMTLTE------GNKLEKKLFYSTFATDDRREGMSAFVEKRKANFKD 259
>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 123 bits (309), Expect = 5e-34
Identities = 123/289 (42%), Positives = 179/289 (61%), Gaps = 35/289 (12%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
E GIV L +NR +N+L+ L++ + AV+A++ D++VR +++RS V +FCAGADLK
Sbjct: 12 ENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLK 71
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
R ++ ++ FVS +R + + ++PVP +A +DG A GGGLE+ALACDIRVAAS+ +
Sbjct: 72 ERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAK 131
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
MGLVETKLAIIPG GGTQRLPR +G+ LAKELI++ R++D EAK++GL++ + QN
Sbjct: 132 MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEG 191
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
+AAY +L +A + GP+A+R+AK +I+ +
Sbjct: 192 DAAYRKALDLAREFLPQGPVAMRVAKLAIN-----------------------------Q 222
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
G E G+ E CY + I T+DR+EGL +F K P YKG
Sbjct: 223 GMEVDLVT------GLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYKG 265
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus
thermophilus [TaxId: 274]}
Length = 253
Score = 111 bits (278), Expect = 1e-29
Identities = 72/289 (24%), Positives = 117/289 (40%), Gaps = 42/289 (14%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
E+ + + +N P+ RN L+ + +L A++ + D VR V+L K
Sbjct: 5 EKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAF 64
Query: 104 HRLTLNEDQIRSFVSTL--RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
++ +L + ++ + P P +A ++G A GG +ALACD+ V
Sbjct: 65 LERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEE 124
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNP 221
R+G E K A + L R VG AK+L+ TGRLV++ EAK++GLVN + P
Sbjct: 125 ARLGYTEVK-IGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGK 183
Query: 222 NQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281
A +AE++A N P ++R+ K + G D
Sbjct: 184 ALEEAK----ALAEEVAKNAPTSLRLTKELLLA-LPGMGLED------------------ 220
Query: 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330
G + V T D EG+++F K P +
Sbjct: 221 ----------------GFRLAALANAWVRETGDLAEGIRAFFEKRPPRF 253
>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 275
Score = 98.7 bits (244), Expect = 2e-24
Identities = 50/294 (17%), Positives = 108/294 (36%), Gaps = 47/294 (15%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ ++ + +NRP+ RNA+N E++ + I D + R V++ K +
Sbjct: 11 QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDM 70
Query: 105 RLTLNEDQIRSFVSTLRYMTCQ----------LESIPVPVLAVLDGSAYGGGLEMALACD 154
+ + Y+ +E P PV+A + G GGG+++ ACD
Sbjct: 71 ASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACD 130
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVN 214
IR + + E + + G QRLP+++G + A
Sbjct: 131 IRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNR--SLVNELTFTARKMMADEALDSG 188
Query: 215 TLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDG 274
++ P+++ A+ +A DI+ P+AV+ +K ++
Sbjct: 189 LVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLI--------------------- 227
Query: 275 QGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKP 328
++ E +++ +++TQD ++ +++ + K
Sbjct: 228 --------YSRDHSVDE------SLDYMATWNMSMLQTQDIIKSVQAAMEKKDS 267
>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 297
Score = 90.2 bits (222), Expect = 3e-21
Identities = 64/315 (20%), Positives = 104/315 (33%), Gaps = 59/315 (18%)
Query: 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK 93
LT I YH + V + NRP+ RNA V+E+ ++ R +V VLL
Sbjct: 17 LTDITYHRHVDD-ATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGP 75
Query: 94 DVFCAGADLKHRLTLNE-----------------DQIRSFVSTLRYMTCQLESIPVPVLA 136
G D R+ + + + +P V+
Sbjct: 76 SPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVIC 135
Query: 137 VLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKEL 195
+++G A GGG + + CD+ +A+ R + + G G+ L R VG A+E+
Sbjct: 136 LVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREI 195
Query: 196 IYTGRLVDSTEAKSIGLVNTLTPQNPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGP 255
+ GR + + +G VN + + + A +I P A RM K +
Sbjct: 196 FFLGRTYTAEQMHQMGAVNAVAEHAELETVGL----QWAAEINAKSPQAQRMLKFAF--- 248
Query: 256 GRGTQYRDGQSTHSPGRDGQGSKGGESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDR 315
N G + G T +
Sbjct: 249 ---------------------------------NLLDDGLVGQQLFAGEATRLAYMTDEA 275
Query: 316 VEGLKSFLGKYKPVY 330
VEG +FL K P +
Sbjct: 276 VEGRDAFLQKRPPDW 290
>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 266
Score = 81.6 bits (200), Expect = 2e-18
Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 13/224 (5%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCA-------- 98
+ + P NAL + +E + +V +++S +
Sbjct: 14 PFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAK 73
Query: 99 --GADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
G D + + +FV+ Y+T ++ L+G A G + CDI
Sbjct: 74 AQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIV 133
Query: 157 VA-ASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNT 215
+ V + L +I G T LP G E + + G ++
Sbjct: 134 YSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISK 193
Query: 216 LTPQNPNQNAAYLASL--RIAEDIAHNGPIAVRMAKRSIDGPGR 257
+ A+ A + + E + + K+ +
Sbjct: 194 NFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNHI 237
>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA
isomerase {Human (Homo sapiens) [TaxId: 9606]}
Length = 245
Score = 80.6 bits (197), Expect = 3e-18
Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 10/210 (4%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI ++ NRP+ +NA+N + EI+ A++A D+ + V + D + +G DL +
Sbjct: 12 GITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITV--LTGNGDYYSSGNDLTNFT 69
Query: 107 TLNEDQIRSFVSTLRYMTCQL----ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ + + + P P++AV++G A G + + D A+
Sbjct: 70 DIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRA 129
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
+ L P + P+I+ A E++ G+ + + EA + GLV + P +
Sbjct: 130 TFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTF 189
Query: 223 QNAAYLASLRIAEDIAHNGPIAVRMAKRSI 252
Q + A P A+R++K I
Sbjct: 190 QKEV----WTRLKAFAKLPPNALRISKEVI 215
>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia
coli [TaxId: 562]}
Length = 261
Score = 78.7 bits (192), Expect = 1e-17
Identities = 58/286 (20%), Positives = 115/286 (40%), Gaps = 38/286 (13%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + N + NAL+ +++++ A+ + E+RC++LR+ + H L
Sbjct: 13 KVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRP-EIRCIILRAPSGSKVFSAGHDIHEL 71
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
S+ LR +T ++ P P++++++GS +GG EM ++ D+ +AAS +
Sbjct: 72 PSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSM 131
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
L + G L R G + KELI+T + + A ++G++N + ++
Sbjct: 132 TPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFT 191
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESKGTE 286
++A I+ P+A+ + K + G +
Sbjct: 192 L----QMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDE--------------------- 226
Query: 287 NQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVYKG 332
E V ++D EG+ +FL K KP + G
Sbjct: 227 ------------FERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFVG 260
>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas
sp., strain CBS-3 [TaxId: 306]}
Length = 269
Score = 76.4 bits (186), Expect = 1e-16
Identities = 65/287 (22%), Positives = 111/287 (38%), Gaps = 45/287 (15%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G+ E+ + P+ RNAL+ ++E+ A+ D+ V V++ + +D FCAG L+
Sbjct: 12 GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMI-TGAEDAFCAGFYLREIP 70
Query: 107 TLNED-----QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
R M ++ + PVLA ++G A GGGL ++LA D+ + A +
Sbjct: 71 LDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADS 130
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNP 221
+ + I + L RIVG+ A EL+ T R + EAK GLV+ + P++
Sbjct: 131 AKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDE 190
Query: 222 NQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281
+ A+ ++A ++A MAK
Sbjct: 191 FREVAW----KVARELAAAPTHLQVMAKERFH---------------------------- 218
Query: 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKP 328
G E E+E + + L FL ++
Sbjct: 219 -AGWMQPVEE------CTEFEIQNVIASVTHPHFMPCLTRFLDGHRA 258
>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus
erythropolis [TaxId: 1833]}
Length = 249
Score = 70.1 bits (170), Expect = 1e-14
Identities = 40/206 (19%), Positives = 72/206 (34%), Gaps = 5/206 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G++ + ++ +T +E+ I D E + V+L L
Sbjct: 22 GVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNL 81
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
D R + SI VPV+A ++G ++ + A S
Sbjct: 82 GTPHDWDEIIFEGQRLLNNL-LSIEVPVIAAVNGPVTNAPEIPVMSDIVLAAESATFQDG 140
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
I+PG G P ++G + + TG+ +D+ A G VN + + A
Sbjct: 141 PHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRA 200
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSI 252
+A IA +A R A++ +
Sbjct: 201 ----WELARGIAEKPLLARRYARKVL 222
>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit,
N-terminal domain {Pseudomonas fragi [TaxId: 296]}
Length = 310
Score = 67.0 bits (162), Expect = 3e-13
Identities = 75/284 (26%), Positives = 129/284 (45%), Gaps = 7/284 (2%)
Query: 47 GIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAG---ADL 102
GIVEL + + ++ N N + E+ AV+AI+ D V+ V++ S KDVF G +
Sbjct: 16 GIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEF 74
Query: 103 KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
L + ++ + + E + VP +A ++G A GGGLEM LA D RV A +
Sbjct: 75 VENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSA 134
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPN 222
++GL E KL I PG GGT RLPR++G+ A E I +G+ + +A + V+ + +
Sbjct: 135 KIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKL 194
Query: 223 QNAAYLASLRIAE-DIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGE 281
AA R ++ + ++ K ++ + + + + E
Sbjct: 195 GAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAGPNYPAPVE 254
Query: 282 SKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGK 325
+ T + GR +E E + ++ +T + FL
Sbjct: 255 AIKTIQKAAN-FGRDKALEVEAAGFAKLAKTSASNCLIGLFLND 297
>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218
{Thermus thermophilus [TaxId: 274]}
Length = 263
Score = 65.3 bits (157), Expect = 9e-13
Identities = 58/287 (20%), Positives = 95/287 (33%), Gaps = 42/287 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCA-GADLK 103
RPG++E+ R + NA+ L + + E VR VLLR L
Sbjct: 17 RPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLI 75
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ + + + R + + P PV+A ++ A G GL +ALA DI V R
Sbjct: 76 EEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTR 135
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQ 223
+ +L + G P +VG+ AK + + EA+ +GLV
Sbjct: 136 LLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVY 195
Query: 224 NAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKGGESK 283
A +AE +A A+ K ++
Sbjct: 196 EKAL----EVAERLAQGPKEALHHTKHAL------------------------------- 220
Query: 284 GTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330
N ++ E ++ EGLK+ K P +
Sbjct: 221 -----NHWYRSFLPHFELSLALEFLGFSGKELEEGLKALKEKRPPEF 262
>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB
{Pectobacterium carotovorum [TaxId: 554]}
Length = 230
Score = 62.2 bits (149), Expect = 7e-12
Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 4/207 (1%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + ++ P N + TL + A+ D+ VR V++ + F AG D
Sbjct: 9 EVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVK 68
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
L+ + Q G + ++ +
Sbjct: 69 QLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFV 128
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQNAA 226
+ I + G L G +E+IY + +D+ LVN + + +AA
Sbjct: 129 MPELKHGIGCSVGAAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAA 188
Query: 227 YLASLRIAEDIAHNGPIAVRMAKRSID 253
+ A +A A KR+++
Sbjct: 189 ----ITQAHVMASYPASAFINTKRAVN 211
>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 258
Score = 58.0 bits (138), Expect = 2e-10
Identities = 43/291 (14%), Positives = 94/291 (32%), Gaps = 44/291 (15%)
Query: 44 ERPGIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGA-- 100
+ G ++ ++ R +NALN +++E++ A+ + D + + VL + C
Sbjct: 8 KEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFG 66
Query: 101 -DLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
++H V T++ P++ ++G A G G + CD+ A
Sbjct: 67 YFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWAN 126
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQ 219
T P + P+++G A E++ GR + + EA + GLV+ +
Sbjct: 127 EKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLT 186
Query: 220 NPNQNAAYLASLRIAEDIAHNGPIAVRMAKRSIDGPGRGTQYRDGQSTHSPGRDGQGSKG 279
+++A I + K +
Sbjct: 187 GTFTQEVM----IQIKELASYNAIVLEECKALV--------------------------- 215
Query: 280 GESKGTENQNREFQGRYSGMEWEGICYDRVIRTQDRVEGLKSFLGKYKPVY 330
N + E E ++ + +E + ++ +
Sbjct: 216 -------RCNIK-LELEQANERECEVLRKIWSSAQGIESMLKYVENKIDEF 258
>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 249
Score = 53.3 bits (126), Expect = 7e-09
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 7/209 (3%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G+ + P N+L+ + E++ ++E + D+ R V+L S VF AG DL
Sbjct: 13 GVAVMKFKNP-PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMC 71
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM-- 164
+ + ++ + +L + +++ ++G+ GG +AL CD R+ A N R
Sbjct: 72 GRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCI 131
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAKELIYTGRLVDSTEAKSIGLVNTLTPQNPNQN 224
GL ET+L II L +G A+ + G L EA +G+V+ + P+ Q+
Sbjct: 132 GLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQS 191
Query: 225 AAYLASLRIAEDIAHNGPIAVRMAKRSID 253
A L A ++ K +
Sbjct: 192 TA----LSAIAQWMAIPDHARQLTKAMMR 216
>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria
meningitidis [TaxId: 487]}
Length = 225
Score = 29.7 bits (65), Expect = 0.42
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
Query: 171 LAIIPGAGGTQRLPR-----IVGIPL 191
+A+I ++ LP + GI L
Sbjct: 6 IAVILARQNSKGLPLKNLRKMNGISL 31
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 527
Score = 29.7 bits (66), Expect = 0.51
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 14/68 (20%)
Query: 35 TQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTA-------VEAIRGDEEVRCVL 87
I Y + IV +NRP TL E+I+ E RG +R
Sbjct: 13 EYIRYDLLEKNIDIVRKRLNRPL-------TLSEKIVYGHLDDPANQEIERGKTYLRLRP 65
Query: 88 LRSLVKDV 95
R ++D
Sbjct: 66 DRVAMQDA 73
>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 228
Score = 28.5 bits (62), Expect = 1.0
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 5/26 (19%)
Query: 171 LAIIPGAGGTQRLPR-----IVGIPL 191
A++ GG++ +P + G+PL
Sbjct: 5 AALVLARGGSKGIPLKNIKRLAGVPL 30
>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
Length = 157
Score = 25.7 bits (56), Expect = 5.8
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 8/87 (9%)
Query: 108 LNEDQIRSFVSTLRYMT-----CQLESIP--VPVLAVLDGSAYGGGLEMALACDIRVAAS 160
L + + +R ++P V+ VLD + G L D+ A
Sbjct: 32 LAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLDVCSAFV 91
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIV 187
+ + LA G G + P +V
Sbjct: 92 ERGEAMPKI-LAGRYGLGSKEFSPAMV 117
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.395
Gapped
Lambda K H
0.267 0.0356 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,196,842
Number of extensions: 54463
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 31
Length of query: 333
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,226,816
Effective search space: 303023552
Effective search space used: 303023552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.2 bits)