BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5031
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QNU|A Chain A, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Hexagonal Form
pdb|3QOF|A Chain A, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Orthorhombic Form
pdb|3QOF|B Chain B, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Orthorhombic Form
pdb|3QOF|C Chain C, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Orthorhombic Form
pdb|3QOF|D Chain D, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Orthorhombic Form
Length = 459
Score = 209 bits (532), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/146 (69%), Positives = 122/146 (83%), Gaps = 5/146 (3%)
Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
AFRKGKSFL+DF+LRYM Y +E S DW+G + PL GFSWRGGSER+TTGI +WS +
Sbjct: 87 AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 141
Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
++ P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct: 142 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 201
Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
LQLFTEYGRLA+ +T KPFQ L FL
Sbjct: 202 LQLFTEYGRLAMEETFLKPFQSLIFL 227
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 14 EEDSLPQYGAIQIVKSEEKHKFILDYEALERILLQXXXXXXXXXXXSVAGAFRKGKSFLL 73
EE+ + + G +Q++ ++ H F LD AL RILL SVAGAFRKGKSFL+
Sbjct: 37 EEEPVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLM 96
Query: 74 DFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEK 133
DF+LRYM Y +E S DW+G + PL GFSWRGGSER+TTGI +WS +++ P G+K
Sbjct: 97 DFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKK 151
Query: 134 VSAF 137
V+
Sbjct: 152 VAVL 155
>pdb|4IDQ|A Chain A, Human Atlastin-1 1-446, N440t, Gdpalf4-
pdb|4IDQ|B Chain B, Human Atlastin-1 1-446, N440t, Gdpalf4-
pdb|4IDQ|C Chain C, Human Atlastin-1 1-446, N440t, Gdpalf4-
pdb|4IDQ|D Chain D, Human Atlastin-1 1-446, N440t, Gdpalf4-
Length = 447
Score = 209 bits (532), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/146 (69%), Positives = 122/146 (83%), Gaps = 5/146 (3%)
Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
AFRKGKSFL+DF+LRYM Y +E S DW+G + PL GFSWRGGSER+TTGI +WS +
Sbjct: 76 AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 130
Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
++ P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct: 131 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 190
Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
LQLFTEYGRLA+ +T KPFQ L FL
Sbjct: 191 LQLFTEYGRLAMEETFLKPFQSLIFL 216
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 14 EEDSLPQYGAIQIVKSEEKHKFILDYEALERILLQXXXXXXXXXXXSVAGAFRKGKSFLL 73
EE+ + + G +Q++ ++ H F LD AL RILL SVAGAFRKGKSFL+
Sbjct: 26 EEEPVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLM 85
Query: 74 DFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEK 133
DF+LRYM Y +E S DW+G + PL GFSWRGGSER+TTGI +WS +++ P G+K
Sbjct: 86 DFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKK 140
Query: 134 VSAF 137
V+
Sbjct: 141 VAVL 144
>pdb|3Q5E|A Chain A, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 2
pdb|3Q5E|C Chain C, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 2
pdb|3Q5E|E Chain E, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 2
pdb|3Q5E|G Chain G, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 2
Length = 447
Score = 209 bits (532), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/146 (69%), Positives = 122/146 (83%), Gaps = 5/146 (3%)
Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
AFRKGKSFL+DF+LRYM Y +E S DW+G + PL GFSWRGGSER+TTGI +WS +
Sbjct: 75 AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 129
Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
++ P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct: 130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189
Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
LQLFTEYGRLA+ +T KPFQ L FL
Sbjct: 190 LQLFTEYGRLAMEETFLKPFQSLIFL 215
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 14 EEDSLPQYGAIQIVKSEEKHKFILDYEALERILLQXXXXXXXXXXXSVAGAFRKGKSFLL 73
EE+ + + G +Q++ ++ H F LD AL RILL SVAGAFRKGKSFL+
Sbjct: 25 EEEPVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLM 84
Query: 74 DFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEK 133
DF+LRYM Y +E S DW+G + PL GFSWRGGSER+TTGI +WS +++ P G+K
Sbjct: 85 DFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKK 139
Query: 134 VSAF 137
V+
Sbjct: 140 VAVL 143
>pdb|4IDN|A Chain A, Human Atlastin-1 1-446, C-his6, Gppnhp
pdb|4IDN|B Chain B, Human Atlastin-1 1-446, C-his6, Gppnhp
pdb|4IDO|A Chain A, Human Atlastin-1 1-446, C-his6, Gdpalf4-
pdb|4IDO|B Chain B, Human Atlastin-1 1-446, C-his6, Gdpalf4-
Length = 457
Score = 209 bits (532), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/146 (69%), Positives = 122/146 (83%), Gaps = 5/146 (3%)
Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
AFRKGKSFL+DF+LRYM Y +E S DW+G + PL GFSWRGGSER+TTGI +WS +
Sbjct: 75 AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 129
Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
++ P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct: 130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189
Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
LQLFTEYGRLA+ +T KPFQ L FL
Sbjct: 190 LQLFTEYGRLAMEETFLKPFQSLIFL 215
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 14 EEDSLPQYGAIQIVKSEEKHKFILDYEALERILLQXXXXXXXXXXXSVAGAFRKGKSFLL 73
EE+ + + G +Q++ ++ H F LD AL RILL SVAGAFRKGKSFL+
Sbjct: 25 EEEPVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLM 84
Query: 74 DFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEK 133
DF+LRYM Y +E S DW+G + PL GFSWRGGSER+TTGI +WS +++ P G+K
Sbjct: 85 DFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKK 139
Query: 134 VSAF 137
V+
Sbjct: 140 VAVL 143
>pdb|3Q5D|A Chain A, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 1
Length = 447
Score = 199 bits (506), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/146 (68%), Positives = 116/146 (79%), Gaps = 5/146 (3%)
Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
AFRKGKSFL DF LRY Y +E S DW+G + PL GFSWRGGSER+TTGI +WS +
Sbjct: 75 AFRKGKSFLXDFXLRYX---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 129
Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
++ P G+K AV+L DTQGTFDS+ST+RD ATVFALST +SSIQ+YNLSQN+QEDDLQH
Sbjct: 130 FLINKPDGKKVAVLLXDTQGTFDSQSTLRDSATVFALSTXISSIQVYNLSQNVQEDDLQH 189
Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
LQLFTEYGRLA +T KPFQ L FL
Sbjct: 190 LQLFTEYGRLAXEETFLKPFQSLIFL 215
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 78/124 (62%), Gaps = 5/124 (4%)
Query: 14 EEDSLPQYGAIQIVKSEEKHKFILDYEALERILLQXXXXXXXXXXXSVAGAFRKGKSFLL 73
EE+ + + G +Q++ ++ H F LD AL RILL SVAGAFRKGKSFL
Sbjct: 25 EEEPVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLX 84
Query: 74 DFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEK 133
DF LRY Y +E S DW+G + PL GFSWRGGSER+TTGI +WS +++ P G+K
Sbjct: 85 DFXLRYX---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKK 139
Query: 134 VSAF 137
V+
Sbjct: 140 VAVL 143
>pdb|4IDP|A Chain A, Human Atlastin-1 1-446, N440t, Gppnhp
pdb|4IDP|B Chain B, Human Atlastin-1 1-446, N440t, Gppnhp
pdb|4IDP|C Chain C, Human Atlastin-1 1-446, N440t, Gppnhp
pdb|4IDP|D Chain D, Human Atlastin-1 1-446, N440t, Gppnhp
Length = 447
Score = 199 bits (506), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/146 (68%), Positives = 116/146 (79%), Gaps = 5/146 (3%)
Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
AFRKGKSFL DF LRY Y +E S DW+G + PL GFSWRGGSER+TTGI +WS +
Sbjct: 76 AFRKGKSFLXDFXLRYX---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 130
Query: 196 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255
++ P G+K AV+L DTQGTFDS+ST+RD ATVFALST +SSIQ+YNLSQN+QEDDLQH
Sbjct: 131 FLINKPDGKKVAVLLXDTQGTFDSQSTLRDSATVFALSTXISSIQVYNLSQNVQEDDLQH 190
Query: 256 LQLFTEYGRLALADTGTKPFQRLQFL 281
LQLFTEYGRLA +T KPFQ L FL
Sbjct: 191 LQLFTEYGRLAXEETFLKPFQSLIFL 216
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 78/124 (62%), Gaps = 5/124 (4%)
Query: 14 EEDSLPQYGAIQIVKSEEKHKFILDYEALERILLQXXXXXXXXXXXSVAGAFRKGKSFLL 73
EE+ + + G +Q++ ++ H F LD AL RILL SVAGAFRKGKSFL
Sbjct: 26 EEEPVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLX 85
Query: 74 DFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEK 133
DF LRY Y +E S DW+G + PL GFSWRGGSER+TTGI +WS +++ P G+K
Sbjct: 86 DFXLRYX---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKK 140
Query: 134 VSAF 137
V+
Sbjct: 141 VAVL 144
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 174 EGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSES-TVRDCATVFAL 232
+GFS + T GI MW + P ++LLDT+G D E ++ + +FAL
Sbjct: 74 KGFSLGSTVQSHTKGIWMWCVPH----PKKPGHILVLLDTEGLGDVEKGDNQNDSWIFAL 129
Query: 233 STMLSSIQIYNLSQNIQEDDLQHLQLFTE 261
+ +LSS +YN I + + L TE
Sbjct: 130 AVLLSSTFVYNSIGTINQQAMDQLYYVTE 158
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 174 EGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSES-TVRDCATVFAL 232
+GFS + T GI MW + P ++LLDT+G D E ++ + +FAL
Sbjct: 63 KGFSLGSTVQSHTKGIWMWCVPH----PKKPGHILVLLDTEGLGDVEKGDNQNDSWIFAL 118
Query: 233 STMLSSIQIYNLSQNIQEDDLQHLQLFTE 261
+ +LSS +YN I + + L TE
Sbjct: 119 AVLLSSTFVYNSIGTINQQAMDQLYYVTE 147
>pdb|3P0U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
pdb|3P0U|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
Length = 249
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 226 CATVFALSTMLSSIQIYNLSQNIQEDDL 253
CA V +LST+L++I + +L +IQED L
Sbjct: 87 CAQVMSLSTILAAI-VNHLQNSIQEDKL 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,659,299
Number of Sequences: 62578
Number of extensions: 376078
Number of successful extensions: 706
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 678
Number of HSP's gapped (non-prelim): 19
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)