Query psy5031
Match_columns 281
No_of_seqs 137 out of 488
Neff 5.2
Searched_HMMs 46136
Date Sat Aug 17 00:00:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02263 GBP: Guanylate-bindin 100.0 1.3E-43 2.8E-48 325.1 12.6 149 32-281 1-158 (260)
2 KOG2037|consensus 100.0 1.6E-36 3.5E-41 302.8 6.8 214 25-281 6-219 (552)
3 cd01851 GBP Guanylate-binding 100.0 2.3E-30 5.1E-35 232.7 10.9 104 174-281 32-140 (224)
4 KOG2203|consensus 99.3 2.9E-12 6.3E-17 128.4 7.6 155 20-279 3-181 (772)
5 KOG2037|consensus 99.3 3.2E-12 7E-17 128.9 5.8 116 17-134 27-144 (552)
6 PF05879 RHD3: Root hair defec 98.9 1.4E-09 3E-14 113.7 3.9 117 134-279 1-144 (742)
7 cd01852 AIG1 AIG1 (avrRpt2-ind 97.7 0.00019 4.2E-09 62.4 8.7 21 59-79 3-23 (196)
8 PF04548 AIG1: AIG1 family; I 97.7 0.00019 4.1E-09 63.9 8.1 60 206-266 49-115 (212)
9 PF01926 MMR_HSR1: 50S ribosom 97.4 0.0007 1.5E-08 53.6 7.3 20 59-78 2-21 (116)
10 COG1159 Era GTPase [General fu 97.1 0.001 2.2E-08 63.3 6.6 27 53-79 3-29 (298)
11 cd01853 Toc34_like Toc34-like 97.0 0.0042 9.1E-08 57.3 9.4 26 54-79 29-54 (249)
12 PRK00089 era GTPase Era; Revie 97.0 0.0029 6.2E-08 58.4 8.0 26 54-79 3-28 (292)
13 PF02263 GBP: Guanylate-bindin 96.7 0.00086 1.9E-08 61.9 2.4 21 103-123 47-67 (260)
14 KOG4181|consensus 96.5 0.003 6.5E-08 61.8 4.5 49 22-79 163-211 (491)
15 cd01858 NGP_1 NGP-1. Autoanti 96.4 0.0051 1.1E-07 51.6 5.0 26 55-80 69-94 (157)
16 TIGR00436 era GTP-binding prot 96.4 0.0051 1.1E-07 56.5 5.3 22 58-79 2-23 (270)
17 PF05879 RHD3: Root hair defec 96.2 0.0018 4E-08 68.3 1.3 38 62-122 1-40 (742)
18 TIGR03598 GTPase_YsxC ribosome 96.2 0.029 6.2E-07 47.8 8.3 25 54-78 16-40 (179)
19 cd01849 YlqF_related_GTPase Yl 96.0 0.015 3.1E-07 48.8 5.8 26 55-80 59-84 (155)
20 TIGR00993 3a0901s04IAP86 chlor 96.0 0.032 7E-07 58.7 9.2 23 57-79 119-141 (763)
21 TIGR02836 spore_IV_A stage IV 96.0 0.014 3.1E-07 58.5 6.3 22 59-80 20-41 (492)
22 PF00350 Dynamin_N: Dynamin fa 96.0 0.0043 9.3E-08 51.7 2.4 21 59-79 1-21 (168)
23 cd01898 Obg Obg subfamily. Th 96.0 0.061 1.3E-06 44.3 9.2 20 59-78 3-22 (170)
24 cd04101 RabL4 RabL4 (Rab-like4 95.9 0.028 6E-07 46.2 7.0 19 59-77 3-21 (164)
25 PF02421 FeoB_N: Ferrous iron 95.9 0.011 2.4E-07 51.2 4.6 21 59-79 3-23 (156)
26 PF03193 DUF258: Protein of un 95.7 0.0098 2.1E-07 51.9 3.5 22 58-79 37-58 (161)
27 PF13207 AAA_17: AAA domain; P 95.7 0.0096 2.1E-07 47.1 3.2 24 58-81 1-24 (121)
28 cd01890 LepA LepA subfamily. 95.6 0.068 1.5E-06 44.6 8.2 21 59-79 3-23 (179)
29 cd01850 CDC_Septin CDC/Septin. 95.6 0.036 7.8E-07 51.7 6.9 22 58-79 6-27 (276)
30 PRK12289 GTPase RsgA; Reviewed 95.5 0.022 4.7E-07 55.3 5.5 21 59-79 175-195 (352)
31 TIGR00991 3a0901s02IAP34 GTP-b 95.5 0.14 3.1E-06 49.2 10.6 27 53-79 35-61 (313)
32 cd04142 RRP22 RRP22 subfamily. 95.4 0.11 2.5E-06 45.5 9.1 20 59-78 3-22 (198)
33 cd01876 YihA_EngB The YihA (En 95.3 0.037 8E-07 44.5 5.4 19 59-77 2-20 (170)
34 COG1136 SalX ABC-type antimicr 95.2 0.013 2.9E-07 53.8 2.7 21 58-78 33-53 (226)
35 PRK12288 GTPase RsgA; Reviewed 95.2 0.024 5.2E-07 54.9 4.6 21 59-79 208-228 (347)
36 PF00485 PRK: Phosphoribulokin 95.2 0.017 3.7E-07 50.3 3.3 25 58-82 1-25 (194)
37 PRK12298 obgE GTPase CgtA; Rev 95.0 0.14 3.1E-06 50.2 9.5 24 56-79 159-182 (390)
38 cd04178 Nucleostemin_like Nucl 94.9 0.049 1.1E-06 47.4 5.3 22 57-78 118-139 (172)
39 TIGR00157 ribosome small subun 94.8 0.075 1.6E-06 48.7 6.5 22 58-79 122-143 (245)
40 KOG1423|consensus 94.8 0.06 1.3E-06 52.2 5.9 27 53-79 69-95 (379)
41 cd04119 RJL RJL (RabJ-Like) su 94.8 0.11 2.4E-06 42.2 6.8 21 59-79 3-23 (168)
42 cd04113 Rab4 Rab4 subfamily. 94.7 0.1 2.2E-06 42.7 6.5 21 59-79 3-23 (161)
43 cd04104 p47_IIGP_like p47 (47- 94.7 0.12 2.6E-06 45.2 7.3 21 59-79 4-24 (197)
44 PRK09563 rbgA GTPase YlqF; Rev 94.7 0.087 1.9E-06 49.2 6.6 27 56-82 81-107 (287)
45 cd01868 Rab11_like Rab11-like. 94.7 0.11 2.4E-06 42.7 6.6 23 57-79 4-26 (165)
46 COG3840 ThiQ ABC-type thiamine 94.6 0.025 5.4E-07 51.4 2.7 25 58-82 27-51 (231)
47 cd01861 Rab6 Rab6 subfamily. 94.6 0.11 2.5E-06 42.3 6.4 21 59-79 3-23 (161)
48 cd01864 Rab19 Rab19 subfamily. 94.5 0.13 2.7E-06 42.6 6.6 22 57-78 4-25 (165)
49 cd04106 Rab23_lke Rab23-like s 94.4 0.14 3.1E-06 41.7 6.7 20 59-78 3-22 (162)
50 TIGR00235 udk uridine kinase. 94.4 0.043 9.4E-07 48.3 3.8 28 54-81 4-31 (207)
51 PRK15494 era GTPase Era; Provi 94.4 0.09 2E-06 50.4 6.1 27 53-79 49-75 (339)
52 cd02023 UMPK Uridine monophosp 94.4 0.031 6.7E-07 48.6 2.7 23 58-80 1-23 (198)
53 cd01866 Rab2 Rab2 subfamily. 94.3 0.18 3.9E-06 42.1 7.1 25 55-79 3-27 (168)
54 PRK00098 GTPase RsgA; Reviewed 94.2 0.079 1.7E-06 49.8 5.3 22 58-79 166-187 (298)
55 cd04115 Rab33B_Rab33A Rab33B/R 94.2 0.19 4.1E-06 42.0 7.1 23 56-78 2-24 (170)
56 PRK05480 uridine/cytidine kina 94.1 0.045 9.7E-07 48.0 3.2 26 55-80 5-30 (209)
57 cd04171 SelB SelB subfamily. 94.1 0.036 7.8E-07 45.0 2.4 21 58-78 2-22 (164)
58 TIGR03596 GTPase_YlqF ribosome 94.0 0.26 5.6E-06 45.7 8.2 26 57-82 79-104 (276)
59 cd02025 PanK Pantothenate kina 94.0 0.038 8.2E-07 49.8 2.6 24 58-81 1-24 (220)
60 PF13238 AAA_18: AAA domain; P 93.9 0.05 1.1E-06 42.7 2.9 22 59-80 1-22 (129)
61 cd01894 EngA1 EngA1 subfamily. 93.9 0.12 2.6E-06 41.5 5.2 20 60-79 1-20 (157)
62 cd01865 Rab3 Rab3 subfamily. 93.9 0.17 3.7E-06 42.0 6.2 22 58-79 3-24 (165)
63 PRK08233 hypothetical protein; 93.9 0.052 1.1E-06 45.7 3.0 26 56-81 3-28 (182)
64 PTZ00301 uridine kinase; Provi 93.9 0.052 1.1E-06 48.9 3.2 27 55-81 2-28 (210)
65 cd04124 RabL2 RabL2 subfamily. 93.8 0.21 4.6E-06 41.4 6.7 21 59-79 3-23 (161)
66 cd04122 Rab14 Rab14 subfamily. 93.8 0.18 3.8E-06 41.8 6.1 21 59-79 5-25 (166)
67 cd04163 Era Era subfamily. Er 93.8 0.046 1E-06 43.7 2.4 23 57-79 4-26 (168)
68 PRK06696 uridine kinase; Valid 93.7 0.1 2.2E-06 46.6 4.8 28 55-82 21-48 (223)
69 cd04116 Rab9 Rab9 subfamily. 93.7 0.22 4.7E-06 41.3 6.5 22 57-78 6-27 (170)
70 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 93.7 0.22 4.8E-06 41.1 6.5 23 57-79 3-25 (166)
71 cd04127 Rab27A Rab27a subfamil 93.7 0.32 7E-06 40.6 7.6 24 56-79 4-27 (180)
72 PF00009 GTP_EFTU: Elongation 93.7 0.066 1.4E-06 46.1 3.5 27 54-80 1-27 (188)
73 COG1116 TauB ABC-type nitrate/ 93.7 0.046 1E-06 51.0 2.6 26 57-82 30-55 (248)
74 PRK09270 nucleoside triphospha 93.7 0.098 2.1E-06 46.9 4.6 30 53-82 30-59 (229)
75 cd01891 TypA_BipA TypA (tyrosi 93.7 0.14 3.1E-06 44.0 5.5 24 56-79 2-25 (194)
76 PF08477 Miro: Miro-like prote 93.7 0.061 1.3E-06 42.0 2.9 21 59-79 2-22 (119)
77 cd04159 Arl10_like Arl10-like 93.6 0.045 9.7E-07 43.6 2.2 21 59-79 2-22 (159)
78 cd01867 Rab8_Rab10_Rab13_like 93.6 0.23 5E-06 41.3 6.5 23 57-79 4-26 (167)
79 cd02019 NK Nucleoside/nucleoti 93.6 0.064 1.4E-06 39.6 2.7 23 58-80 1-23 (69)
80 cd00877 Ran Ran (Ras-related n 93.6 0.26 5.6E-06 41.4 6.7 21 59-79 3-23 (166)
81 COG1084 Predicted GTPase [Gene 93.4 0.18 4E-06 48.9 6.3 42 35-77 148-189 (346)
82 cd04146 RERG_RasL11_like RERG/ 93.4 0.54 1.2E-05 38.8 8.3 20 59-78 2-21 (165)
83 PF03205 MobB: Molybdopterin g 93.4 0.075 1.6E-06 44.8 3.2 25 58-82 2-26 (140)
84 PRK07667 uridine kinase; Provi 93.3 0.15 3.1E-06 44.8 5.0 30 52-82 14-43 (193)
85 cd04112 Rab26 Rab26 subfamily. 93.3 0.22 4.7E-06 42.8 6.0 21 59-79 3-23 (191)
86 PF07693 KAP_NTPase: KAP famil 93.3 0.12 2.6E-06 47.8 4.7 42 40-83 6-47 (325)
87 PF00005 ABC_tran: ABC transpo 93.3 0.055 1.2E-06 43.7 2.1 23 58-80 13-35 (137)
88 cd01854 YjeQ_engC YjeQ/EngC. 93.3 0.26 5.7E-06 46.1 6.9 23 57-79 162-184 (287)
89 cd01862 Rab7 Rab7 subfamily. 93.3 0.059 1.3E-06 44.3 2.3 22 58-79 2-23 (172)
90 PRK00093 GTP-binding protein D 93.2 0.34 7.3E-06 47.2 7.9 19 133-151 178-196 (435)
91 cd04109 Rab28 Rab28 subfamily. 93.2 0.3 6.6E-06 42.9 6.8 20 59-78 3-22 (215)
92 PF13173 AAA_14: AAA domain 93.1 0.092 2E-06 42.7 3.2 24 58-81 4-27 (128)
93 TIGR01425 SRP54_euk signal rec 93.0 0.34 7.3E-06 48.5 7.7 28 54-81 98-125 (429)
94 cd00009 AAA The AAA+ (ATPases 93.0 0.11 2.5E-06 40.3 3.6 24 57-80 20-43 (151)
95 cd01878 HflX HflX subfamily. 93.0 0.062 1.3E-06 46.4 2.2 27 53-79 38-64 (204)
96 PLN03118 Rab family protein; P 93.0 0.33 7.1E-06 42.5 6.8 22 58-79 16-37 (211)
97 TIGR00231 small_GTP small GTP- 93.0 0.078 1.7E-06 41.6 2.6 22 58-79 3-24 (161)
98 TIGR03594 GTPase_EngA ribosome 93.0 0.44 9.5E-06 46.2 8.3 19 133-151 177-195 (429)
99 PF00735 Septin: Septin; Inte 93.0 0.23 5E-06 46.7 6.1 21 59-79 7-27 (281)
100 cd04118 Rab24 Rab24 subfamily. 92.9 0.33 7.1E-06 41.3 6.4 21 59-79 3-23 (193)
101 cd00154 Rab Rab family. Rab G 92.8 0.09 1.9E-06 41.8 2.7 21 59-79 3-23 (159)
102 COG1120 FepC ABC-type cobalami 92.8 0.076 1.6E-06 49.8 2.5 26 57-82 29-54 (258)
103 PLN02318 phosphoribulokinase/u 92.8 0.13 2.9E-06 53.7 4.5 45 32-80 45-89 (656)
104 cd04110 Rab35 Rab35 subfamily. 92.7 0.3 6.5E-06 42.4 6.0 24 56-79 6-29 (199)
105 PF13191 AAA_16: AAA ATPase do 92.6 0.14 2.9E-06 42.9 3.7 31 52-82 20-50 (185)
106 TIGR02528 EutP ethanolamine ut 92.6 0.077 1.7E-06 42.8 2.1 21 59-79 3-23 (142)
107 PF13521 AAA_28: AAA domain; P 92.6 0.078 1.7E-06 44.6 2.2 21 59-79 2-22 (163)
108 COG1126 GlnQ ABC-type polar am 92.6 0.088 1.9E-06 48.7 2.6 22 57-78 29-50 (240)
109 cd03261 ABC_Org_Solvent_Resist 92.6 0.087 1.9E-06 46.9 2.6 24 58-81 28-51 (235)
110 COG1161 Predicted GTPases [Gen 92.6 0.66 1.4E-05 44.4 8.7 21 59-79 135-155 (322)
111 PF01637 Arch_ATPase: Archaeal 92.5 0.069 1.5E-06 45.9 1.7 27 55-81 19-45 (234)
112 cd00876 Ras Ras family. The R 92.5 0.1 2.2E-06 42.1 2.6 21 59-79 2-22 (160)
113 smart00382 AAA ATPases associa 92.4 0.11 2.5E-06 39.7 2.8 25 58-82 4-28 (148)
114 cd04107 Rab32_Rab38 Rab38/Rab3 92.4 0.44 9.4E-06 41.3 6.7 21 59-79 3-23 (201)
115 COG3172 NadR Predicted ATPase/ 92.4 0.11 2.3E-06 46.3 2.8 31 52-82 4-34 (187)
116 cd01886 EF-G Elongation factor 92.3 0.78 1.7E-05 42.7 8.7 21 59-79 2-22 (270)
117 TIGR00073 hypB hydrogenase acc 92.3 0.14 3E-06 45.2 3.5 28 53-80 19-46 (207)
118 TIGR02322 phosphon_PhnN phosph 92.3 0.13 2.7E-06 43.8 3.1 23 58-80 3-25 (179)
119 cd03263 ABC_subfamily_A The AB 92.3 0.1 2.2E-06 45.9 2.6 23 58-80 30-52 (220)
120 TIGR00960 3a0501s02 Type II (G 92.3 0.1 2.2E-06 45.9 2.6 24 57-80 30-53 (216)
121 cd01131 PilT Pilus retraction 92.3 0.13 2.7E-06 45.4 3.2 24 58-81 3-26 (198)
122 cd03238 ABC_UvrA The excision 92.3 0.11 2.4E-06 45.4 2.8 21 57-77 22-42 (176)
123 cd04138 H_N_K_Ras_like H-Ras/N 92.2 0.12 2.5E-06 41.8 2.7 21 59-79 4-24 (162)
124 PRK10463 hydrogenase nickel in 92.2 0.13 2.9E-06 48.9 3.4 32 51-82 99-130 (290)
125 cd01851 GBP Guanylate-binding 92.2 0.068 1.5E-06 48.3 1.4 52 52-124 3-54 (224)
126 PF13671 AAA_33: AAA domain; P 92.2 0.13 2.9E-06 41.5 3.0 24 58-81 1-24 (143)
127 PTZ00132 GTP-binding nuclear p 92.2 0.46 9.9E-06 41.6 6.6 24 55-78 8-31 (215)
128 cd00882 Ras_like_GTPase Ras-li 92.2 0.075 1.6E-06 40.8 1.4 19 61-79 1-19 (157)
129 TIGR01166 cbiO cobalt transpor 92.2 0.11 2.3E-06 44.9 2.5 23 58-80 20-42 (190)
130 cd01860 Rab5_related Rab5-rela 92.2 0.11 2.4E-06 42.4 2.6 22 58-79 3-24 (163)
131 cd03225 ABC_cobalt_CbiO_domain 92.2 0.11 2.4E-06 45.4 2.6 24 57-80 28-51 (211)
132 TIGR01360 aden_kin_iso1 adenyl 92.1 0.13 2.8E-06 43.6 2.9 25 56-80 3-27 (188)
133 cd03260 ABC_PstB_phosphate_tra 92.1 0.13 2.7E-06 45.6 3.0 24 57-80 27-50 (227)
134 PRK10751 molybdopterin-guanine 92.1 0.13 2.8E-06 45.3 3.0 27 56-82 6-32 (173)
135 PRK00300 gmk guanylate kinase; 92.1 0.13 2.8E-06 44.6 3.0 25 56-80 5-29 (205)
136 cd03224 ABC_TM1139_LivF_branch 92.1 0.11 2.3E-06 45.8 2.5 24 57-80 27-50 (222)
137 smart00173 RAS Ras subfamily o 92.1 0.12 2.7E-06 42.3 2.7 21 59-79 3-23 (164)
138 cd04111 Rab39 Rab39 subfamily. 92.1 0.47 1E-05 41.9 6.6 22 58-79 4-25 (211)
139 cd04155 Arl3 Arl3 subfamily. 92.0 0.11 2.4E-06 43.1 2.4 24 56-79 14-37 (173)
140 cd03292 ABC_FtsE_transporter F 92.0 0.12 2.6E-06 45.2 2.7 23 58-80 29-51 (214)
141 cd03269 ABC_putative_ATPase Th 92.0 0.12 2.5E-06 45.3 2.6 24 57-80 27-50 (210)
142 CHL00071 tufA elongation facto 92.0 0.78 1.7E-05 45.0 8.6 27 53-79 9-35 (409)
143 cd02028 UMPK_like Uridine mono 92.0 0.12 2.7E-06 44.9 2.8 24 58-81 1-24 (179)
144 PRK05439 pantothenate kinase; 92.0 0.23 5.1E-06 47.6 4.8 40 40-81 72-111 (311)
145 cd00881 GTP_translation_factor 92.0 0.13 2.7E-06 42.8 2.7 21 59-79 2-22 (189)
146 TIGR02211 LolD_lipo_ex lipopro 92.0 0.12 2.6E-06 45.5 2.6 24 57-80 32-55 (221)
147 TIGR00554 panK_bact pantothena 91.9 0.25 5.3E-06 46.9 4.9 28 53-81 60-87 (290)
148 TIGR02673 FtsE cell division A 91.9 0.12 2.6E-06 45.2 2.6 23 58-80 30-52 (214)
149 PRK14241 phosphate transporter 91.9 0.12 2.7E-06 46.8 2.8 24 57-80 31-54 (258)
150 cd00071 GMPK Guanosine monopho 91.9 0.12 2.5E-06 43.1 2.4 23 58-80 1-23 (137)
151 TIGR02315 ABC_phnC phosphonate 91.9 0.12 2.6E-06 46.1 2.6 24 57-80 29-52 (243)
152 cd04167 Snu114p Snu114p subfam 91.9 0.46 9.9E-06 41.8 6.3 21 59-79 3-23 (213)
153 cd03264 ABC_drug_resistance_li 91.8 0.11 2.4E-06 45.5 2.3 23 58-80 27-49 (211)
154 TIGR03594 GTPase_EngA ribosome 91.8 0.52 1.1E-05 45.7 7.1 22 58-79 1-22 (429)
155 cd04123 Rab21 Rab21 subfamily. 91.8 0.14 3E-06 41.4 2.7 21 59-79 3-23 (162)
156 TIGR00176 mobB molybdopterin-g 91.8 0.14 3E-06 43.9 2.8 25 58-82 1-25 (155)
157 cd03265 ABC_DrrA DrrA is the A 91.8 0.13 2.8E-06 45.4 2.6 24 57-80 27-50 (220)
158 TIGR02173 cyt_kin_arch cytidyl 91.8 0.16 3.4E-06 42.3 3.1 23 58-80 2-24 (171)
159 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.8 0.13 2.8E-06 45.2 2.6 24 57-80 31-54 (218)
160 cd03226 ABC_cobalt_CbiO_domain 91.8 0.13 2.8E-06 44.9 2.6 24 57-80 27-50 (205)
161 PF05970 PIF1: PIF1-like helic 91.8 0.2 4.4E-06 48.3 4.2 25 58-82 24-48 (364)
162 cd01887 IF2_eIF5B IF2/eIF5B (i 91.8 0.14 3.1E-06 41.9 2.7 22 58-79 2-23 (168)
163 cd04160 Arfrp1 Arfrp1 subfamil 91.7 0.13 2.9E-06 42.2 2.6 21 59-79 2-22 (167)
164 PF13555 AAA_29: P-loop contai 91.7 0.16 3.4E-06 37.8 2.7 25 58-82 25-49 (62)
165 cd03369 ABCC_NFT1 Domain 2 of 91.7 0.14 2.9E-06 44.8 2.7 24 57-80 35-58 (207)
166 cd03297 ABC_ModC_molybdenum_tr 91.7 0.14 2.9E-06 45.1 2.7 26 54-80 22-47 (214)
167 cd01884 EF_Tu EF-Tu subfamily. 91.7 0.75 1.6E-05 40.6 7.5 23 57-79 3-25 (195)
168 cd01863 Rab18 Rab18 subfamily. 91.7 0.13 2.9E-06 42.0 2.5 21 59-79 3-23 (161)
169 cd03257 ABC_NikE_OppD_transpor 91.7 0.13 2.7E-06 45.4 2.5 24 57-80 32-55 (228)
170 PRK09087 hypothetical protein; 91.7 0.38 8.3E-06 43.6 5.7 54 23-79 5-67 (226)
171 cd03256 ABC_PhnC_transporter A 91.6 0.13 2.9E-06 45.7 2.6 23 58-80 29-51 (241)
172 cd04145 M_R_Ras_like M-Ras/R-R 91.6 0.17 3.6E-06 41.3 3.0 23 57-79 3-25 (164)
173 cd04154 Arl2 Arl2 subfamily. 91.6 0.13 2.8E-06 43.1 2.4 26 53-79 12-37 (173)
174 PF03308 ArgK: ArgK protein; 91.6 0.22 4.8E-06 46.9 4.1 40 39-82 16-55 (266)
175 TIGR03263 guanyl_kin guanylate 91.6 0.15 3.2E-06 43.3 2.7 23 58-80 3-25 (180)
176 cd01885 EF2 EF2 (for archaea a 91.6 0.7 1.5E-05 41.9 7.3 21 59-79 3-23 (222)
177 cd03258 ABC_MetN_methionine_tr 91.5 0.14 3E-06 45.5 2.6 25 57-81 32-56 (233)
178 cd03235 ABC_Metallic_Cations A 91.5 0.13 2.7E-06 45.2 2.3 23 58-80 27-49 (213)
179 PRK14242 phosphate transporter 91.5 0.15 3.3E-06 45.9 2.9 23 57-79 33-55 (253)
180 COG4240 Predicted kinase [Gene 91.5 0.16 3.5E-06 47.6 3.1 29 56-84 50-78 (300)
181 PRK11629 lolD lipoprotein tran 91.5 0.14 3.1E-06 45.6 2.7 24 57-80 36-59 (233)
182 cd03254 ABCC_Glucan_exporter_l 91.5 0.14 3.1E-06 45.2 2.6 23 58-80 31-53 (229)
183 cd03262 ABC_HisP_GlnQ_permease 91.5 0.14 3.1E-06 44.6 2.6 23 58-80 28-50 (213)
184 PRK13540 cytochrome c biogenes 91.4 0.15 3.2E-06 44.5 2.7 24 57-80 28-51 (200)
185 TIGR03608 L_ocin_972_ABC putat 91.4 0.15 3.3E-06 44.3 2.7 24 57-80 25-48 (206)
186 cd04114 Rab30 Rab30 subfamily. 91.4 0.21 4.5E-06 41.2 3.4 26 54-79 5-30 (169)
187 cd03218 ABC_YhbG The ABC trans 91.4 0.14 3.1E-06 45.3 2.6 24 57-80 27-50 (232)
188 PRK11124 artP arginine transpo 91.4 0.15 3.2E-06 45.7 2.6 24 57-80 29-52 (242)
189 cd03293 ABC_NrtD_SsuB_transpor 91.4 0.15 3.2E-06 45.0 2.6 24 57-80 31-54 (220)
190 PRK14269 phosphate ABC transpo 91.4 0.15 3.3E-06 45.8 2.8 23 57-79 29-51 (246)
191 PRK00454 engB GTP-binding prot 91.4 0.14 3E-06 43.4 2.4 25 55-79 23-47 (196)
192 cd03222 ABC_RNaseL_inhibitor T 91.4 0.14 3.1E-06 44.8 2.5 24 57-80 26-49 (177)
193 cd03268 ABC_BcrA_bacitracin_re 91.4 0.15 3.3E-06 44.5 2.6 24 57-80 27-50 (208)
194 PRK10584 putative ABC transpor 91.3 0.15 3.3E-06 45.1 2.7 24 57-80 37-60 (228)
195 cd03216 ABC_Carb_Monos_I This 91.3 0.16 3.4E-06 43.2 2.6 23 57-79 27-49 (163)
196 cd03259 ABC_Carb_Solutes_like 91.3 0.15 3.3E-06 44.6 2.6 23 58-80 28-50 (213)
197 TIGR01189 ccmA heme ABC export 91.3 0.16 3.4E-06 44.2 2.6 25 56-80 26-50 (198)
198 PF13401 AAA_22: AAA domain; P 91.3 0.18 3.9E-06 40.0 2.8 25 57-81 5-29 (131)
199 PRK14239 phosphate transporter 91.3 0.15 3.3E-06 45.8 2.6 23 57-79 32-54 (252)
200 cd03219 ABC_Mj1267_LivG_branch 91.2 0.14 3E-06 45.5 2.3 24 57-80 27-50 (236)
201 PRK03003 GTP-binding protein D 91.2 1.2 2.5E-05 44.6 9.0 101 59-261 214-320 (472)
202 TIGR02770 nickel_nikD nickel i 91.2 0.15 3.3E-06 45.4 2.6 24 57-80 13-36 (230)
203 PRK13541 cytochrome c biogenes 91.2 0.16 3.5E-06 44.1 2.7 23 58-80 28-50 (195)
204 cd01130 VirB11-like_ATPase Typ 91.2 0.18 3.9E-06 43.8 2.9 40 37-80 10-49 (186)
205 TIGR01978 sufC FeS assembly AT 91.1 0.15 3.3E-06 45.3 2.5 23 57-79 27-49 (243)
206 cd02020 CMPK Cytidine monophos 91.1 0.18 3.9E-06 40.8 2.7 23 58-80 1-23 (147)
207 PRK14262 phosphate ABC transpo 91.1 0.17 3.6E-06 45.6 2.7 24 57-80 30-53 (250)
208 PRK11248 tauB taurine transpor 91.1 0.16 3.5E-06 46.4 2.6 24 57-80 28-51 (255)
209 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.1 0.16 3.4E-06 42.5 2.4 23 57-79 27-49 (144)
210 cd03246 ABCC_Protease_Secretio 91.1 0.19 4.1E-06 42.9 2.9 23 58-80 30-52 (173)
211 PRK12736 elongation factor Tu; 91.1 0.65 1.4E-05 45.3 7.0 27 53-79 9-35 (394)
212 cd04169 RF3 RF3 subfamily. Pe 91.1 0.51 1.1E-05 43.8 5.9 23 57-79 3-25 (267)
213 PRK14245 phosphate ABC transpo 91.0 0.18 3.9E-06 45.4 2.9 23 57-79 30-52 (250)
214 cd03266 ABC_NatA_sodium_export 91.0 0.17 3.6E-06 44.5 2.6 24 57-80 32-55 (218)
215 cd04108 Rab36_Rab34 Rab34/Rab3 91.0 0.68 1.5E-05 39.1 6.2 22 58-79 2-23 (170)
216 cd03245 ABCC_bacteriocin_expor 91.0 0.17 3.8E-06 44.4 2.7 23 58-80 32-54 (220)
217 cd03249 ABC_MTABC3_MDL1_MDL2 M 91.0 0.17 3.7E-06 45.1 2.6 24 57-80 30-53 (238)
218 cd03301 ABC_MalK_N The N-termi 90.9 0.18 3.8E-06 44.1 2.6 23 58-80 28-50 (213)
219 cd03244 ABCC_MRP_domain2 Domai 90.9 0.18 3.9E-06 44.3 2.7 24 57-80 31-54 (221)
220 cd04168 TetM_like Tet(M)-like 90.9 1 2.3E-05 40.9 7.8 21 59-79 2-22 (237)
221 PRK14247 phosphate ABC transpo 90.9 0.18 3.9E-06 45.4 2.7 24 57-80 30-53 (250)
222 cd03251 ABCC_MsbA MsbA is an e 90.9 0.18 3.9E-06 44.7 2.7 24 57-80 29-52 (234)
223 cd01120 RecA-like_NTPases RecA 90.9 0.19 4.1E-06 40.5 2.6 23 58-80 1-23 (165)
224 cd03253 ABCC_ATM1_transporter 90.9 0.18 3.9E-06 44.8 2.7 24 57-80 28-51 (236)
225 PRK14270 phosphate ABC transpo 90.9 0.19 4.2E-06 45.2 2.9 24 57-80 31-54 (251)
226 cd03230 ABC_DR_subfamily_A Thi 90.9 0.18 3.9E-06 43.0 2.6 22 58-79 28-49 (173)
227 cd03296 ABC_CysA_sulfate_impor 90.8 0.18 3.8E-06 45.2 2.6 24 57-80 29-52 (239)
228 PLN03110 Rab GTPase; Provision 90.8 0.74 1.6E-05 40.8 6.5 25 55-79 11-35 (216)
229 PRK14248 phosphate ABC transpo 90.8 0.2 4.3E-06 45.8 2.9 22 58-79 49-70 (268)
230 PLN02796 D-glycerate 3-kinase 90.8 0.2 4.4E-06 48.8 3.1 27 55-81 99-125 (347)
231 PRK11264 putative amino-acid A 90.8 0.18 4E-06 45.2 2.7 23 58-80 31-53 (250)
232 cd03229 ABC_Class3 This class 90.7 0.19 4.2E-06 43.1 2.6 23 57-79 27-49 (178)
233 PRK14261 phosphate ABC transpo 90.7 0.18 4E-06 45.4 2.6 22 58-79 34-55 (253)
234 TIGR03864 PQQ_ABC_ATP ABC tran 90.7 0.18 4E-06 45.0 2.6 24 57-80 28-51 (236)
235 PRK14250 phosphate ABC transpo 90.7 0.18 4E-06 45.3 2.6 23 58-80 31-53 (241)
236 cd04136 Rap_like Rap-like subf 90.7 0.21 4.5E-06 40.7 2.7 22 58-79 3-24 (163)
237 cd03231 ABC_CcmA_heme_exporter 90.7 0.19 4.1E-06 43.9 2.6 24 57-80 27-50 (201)
238 PRK14267 phosphate ABC transpo 90.7 0.19 4.1E-06 45.3 2.7 24 57-80 31-54 (253)
239 PRK13539 cytochrome c biogenes 90.6 0.19 4.2E-06 44.1 2.6 24 57-80 29-52 (207)
240 PRK14273 phosphate ABC transpo 90.6 0.2 4.2E-06 45.3 2.7 24 57-80 34-57 (254)
241 smart00175 RAB Rab subfamily o 90.6 0.19 4.2E-06 40.8 2.5 21 59-79 3-23 (164)
242 PRK10744 pstB phosphate transp 90.6 0.19 4.2E-06 45.7 2.7 24 57-80 40-63 (260)
243 PRK09518 bifunctional cytidyla 90.6 1.2 2.7E-05 46.8 9.0 101 59-261 453-559 (712)
244 cd03295 ABC_OpuCA_Osmoprotecti 90.6 0.2 4.2E-06 45.0 2.7 23 58-80 29-51 (242)
245 cd03116 MobB Molybdenum is an 90.6 0.25 5.4E-06 42.7 3.2 26 57-82 2-27 (159)
246 PRK10247 putative ABC transpor 90.6 0.2 4.4E-06 44.5 2.7 24 57-80 34-57 (225)
247 PRK14274 phosphate ABC transpo 90.6 0.22 4.7E-06 45.2 3.0 23 58-80 40-62 (259)
248 PRK10908 cell division protein 90.5 0.2 4.2E-06 44.3 2.6 24 57-80 29-52 (222)
249 PRK14256 phosphate ABC transpo 90.5 0.21 4.6E-06 45.0 2.9 23 58-80 32-54 (252)
250 cd04117 Rab15 Rab15 subfamily. 90.5 0.82 1.8E-05 37.9 6.2 20 59-78 3-22 (161)
251 TIGR03740 galliderm_ABC gallid 90.5 0.2 4.3E-06 44.3 2.6 24 57-80 27-50 (223)
252 TIGR00972 3a0107s01c2 phosphat 90.5 0.2 4.3E-06 45.1 2.7 24 57-80 28-51 (247)
253 cd03236 ABC_RNaseL_inhibitor_d 90.5 0.19 4.2E-06 46.2 2.6 26 57-82 27-52 (255)
254 PRK06547 hypothetical protein; 90.5 0.33 7.2E-06 42.2 4.0 27 54-80 13-39 (172)
255 PRK15177 Vi polysaccharide exp 90.5 0.2 4.2E-06 44.5 2.6 24 57-80 14-37 (213)
256 cd03234 ABCG_White The White s 90.5 0.2 4.3E-06 44.4 2.6 24 57-80 34-57 (226)
257 COG3596 Predicted GTPase [Gene 90.5 0.44 9.6E-06 45.5 5.0 25 53-78 37-61 (296)
258 cd03223 ABCD_peroxisomal_ALDP 90.5 0.21 4.6E-06 42.6 2.6 23 58-80 29-51 (166)
259 PRK14240 phosphate transporter 90.4 0.21 4.6E-06 44.9 2.7 22 58-79 31-52 (250)
260 PRK14235 phosphate transporter 90.4 0.23 4.9E-06 45.5 3.0 24 57-80 46-69 (267)
261 cd03233 ABC_PDR_domain1 The pl 90.4 0.19 4E-06 44.2 2.3 24 57-80 34-57 (202)
262 smart00763 AAA_PrkA PrkA AAA d 90.4 0.42 9.1E-06 46.9 4.9 45 38-82 56-104 (361)
263 PRK10895 lipopolysaccharide AB 90.4 0.2 4.4E-06 44.7 2.6 24 57-80 30-53 (241)
264 cd03298 ABC_ThiQ_thiamine_tran 90.4 0.21 4.6E-06 43.7 2.6 24 57-80 25-48 (211)
265 PRK11701 phnK phosphonate C-P 90.3 0.21 4.4E-06 45.4 2.6 24 57-80 33-56 (258)
266 COG0572 Udk Uridine kinase [Nu 90.3 0.3 6.4E-06 44.8 3.6 29 54-82 6-34 (218)
267 PRK15056 manganese/iron transp 90.3 0.2 4.4E-06 46.0 2.6 23 58-80 35-57 (272)
268 PRK14251 phosphate ABC transpo 90.3 0.23 4.9E-06 44.7 2.9 24 57-80 31-54 (251)
269 cd01895 EngA2 EngA2 subfamily. 90.3 0.2 4.4E-06 40.5 2.3 21 59-79 5-25 (174)
270 cd03215 ABC_Carb_Monos_II This 90.3 0.21 4.6E-06 43.0 2.5 23 58-80 28-50 (182)
271 PRK14268 phosphate ABC transpo 90.2 0.22 4.7E-06 45.3 2.7 24 57-80 39-62 (258)
272 TIGR03410 urea_trans_UrtE urea 90.2 0.21 4.5E-06 44.3 2.5 25 57-81 27-51 (230)
273 PRK13648 cbiO cobalt transport 90.2 0.21 4.7E-06 45.7 2.6 24 57-80 36-59 (269)
274 TIGR01184 ntrCD nitrate transp 90.2 0.22 4.7E-06 44.6 2.6 24 57-80 12-35 (230)
275 cd04140 ARHI_like ARHI subfami 90.2 0.23 5.1E-06 41.2 2.7 21 59-79 4-24 (165)
276 PRK13538 cytochrome c biogenes 90.2 0.22 4.7E-06 43.6 2.6 24 57-80 28-51 (204)
277 PRK14272 phosphate ABC transpo 90.2 0.22 4.8E-06 44.7 2.7 23 58-80 32-54 (252)
278 PRK13649 cbiO cobalt transport 90.2 0.21 4.5E-06 45.9 2.5 24 57-80 34-57 (280)
279 PF00004 AAA: ATPase family as 90.2 0.3 6.4E-06 38.4 3.1 23 59-81 1-23 (132)
280 cd04156 ARLTS1 ARLTS1 subfamil 90.1 0.22 4.8E-06 40.6 2.4 21 59-79 2-22 (160)
281 PRK10078 ribose 1,5-bisphospho 90.1 0.24 5.1E-06 42.9 2.7 23 58-80 4-26 (186)
282 TIGR02324 CP_lyasePhnL phospho 90.1 0.23 4.9E-06 43.9 2.6 24 57-80 35-58 (224)
283 cd04139 RalA_RalB RalA/RalB su 90.1 0.24 5.3E-06 40.1 2.6 22 58-79 2-23 (164)
284 PRK13645 cbiO cobalt transport 90.1 0.22 4.8E-06 46.1 2.6 25 57-81 38-62 (289)
285 PRK14253 phosphate ABC transpo 90.0 0.26 5.5E-06 44.3 2.9 23 58-80 31-53 (249)
286 cd02024 NRK1 Nicotinamide ribo 90.0 0.23 4.9E-06 44.2 2.5 23 58-80 1-23 (187)
287 cd02026 PRK Phosphoribulokinas 90.0 0.22 4.8E-06 46.5 2.6 24 58-81 1-24 (273)
288 TIGR03005 ectoine_ehuA ectoine 90.0 0.23 4.9E-06 44.8 2.6 23 58-80 28-50 (252)
289 cd00820 PEPCK_HprK Phosphoenol 90.0 0.26 5.6E-06 40.4 2.6 21 57-77 16-36 (107)
290 PRK14255 phosphate ABC transpo 90.0 0.24 5.1E-06 44.6 2.7 22 58-79 33-54 (252)
291 PRK11247 ssuB aliphatic sulfon 90.0 0.23 5E-06 45.6 2.7 23 58-80 40-62 (257)
292 PF13604 AAA_30: AAA domain; P 90.0 0.52 1.1E-05 41.6 4.8 37 40-82 8-44 (196)
293 cd03214 ABC_Iron-Siderophores_ 90.0 0.24 5.3E-06 42.5 2.6 23 57-79 26-48 (180)
294 PRK07261 topology modulation p 90.0 0.27 5.8E-06 42.4 2.9 22 59-80 3-24 (171)
295 PRK10575 iron-hydroxamate tran 89.9 0.21 4.6E-06 45.6 2.3 24 57-80 38-61 (265)
296 cd03252 ABCC_Hemolysin The ABC 89.9 0.24 5.2E-06 44.1 2.6 24 57-80 29-52 (237)
297 PRK09493 glnQ glutamine ABC tr 89.9 0.24 5.2E-06 44.3 2.6 24 57-80 28-51 (240)
298 PRK14249 phosphate ABC transpo 89.9 0.24 5.3E-06 44.6 2.7 23 58-80 32-54 (251)
299 PRK13632 cbiO cobalt transport 89.9 0.24 5.2E-06 45.5 2.7 24 57-80 36-59 (271)
300 PF09547 Spore_IV_A: Stage IV 89.9 0.23 4.9E-06 50.1 2.6 26 55-81 17-42 (492)
301 PRK09825 idnK D-gluconate kina 89.9 0.3 6.4E-06 42.5 3.1 24 58-81 5-28 (176)
302 PRK11300 livG leucine/isoleuci 89.9 0.23 4.9E-06 44.7 2.5 24 57-80 32-55 (255)
303 PRK12735 elongation factor Tu; 89.8 1 2.3E-05 43.9 7.2 27 53-79 9-35 (396)
304 cd03294 ABC_Pro_Gly_Bertaine T 89.8 0.24 5.2E-06 45.5 2.6 24 57-80 51-74 (269)
305 TIGR00101 ureG urease accessor 89.8 0.3 6.4E-06 43.4 3.1 24 58-81 3-26 (199)
306 cd03217 ABC_FeS_Assembly ABC-t 89.8 0.24 5.2E-06 43.4 2.5 23 57-79 27-49 (200)
307 TIGR01393 lepA GTP-binding pro 89.8 1.6 3.5E-05 45.2 8.9 24 56-79 3-26 (595)
308 PRK15112 antimicrobial peptide 89.8 0.24 5.2E-06 45.4 2.6 24 57-80 40-63 (267)
309 PRK14259 phosphate ABC transpo 89.8 0.25 5.3E-06 45.4 2.7 24 57-80 40-63 (269)
310 cd03232 ABC_PDR_domain2 The pl 89.8 0.25 5.4E-06 43.0 2.6 23 57-79 34-56 (192)
311 PRK13548 hmuV hemin importer A 89.8 0.24 5.1E-06 45.2 2.5 23 58-80 30-52 (258)
312 PRK13651 cobalt transporter AT 89.8 0.24 5.1E-06 46.8 2.6 25 57-81 34-58 (305)
313 KOG1547|consensus 89.7 1.1 2.3E-05 42.6 6.8 20 202-221 100-119 (336)
314 PF00448 SRP54: SRP54-type pro 89.7 1.4 3E-05 39.2 7.3 26 57-82 2-27 (196)
315 cd03237 ABC_RNaseL_inhibitor_d 89.7 0.24 5.3E-06 45.2 2.6 24 57-80 26-49 (246)
316 PRK09984 phosphonate/organopho 89.7 0.25 5.3E-06 44.9 2.6 24 57-80 31-54 (262)
317 PRK00698 tmk thymidylate kinas 89.7 0.33 7.2E-06 41.7 3.3 26 57-82 4-29 (205)
318 PRK09544 znuC high-affinity zi 89.7 0.25 5.4E-06 45.1 2.6 24 57-80 31-54 (251)
319 TIGR02524 dot_icm_DotB Dot/Icm 89.7 0.29 6.3E-06 47.6 3.2 26 56-81 134-159 (358)
320 cd00157 Rho Rho (Ras homology) 89.7 0.28 6E-06 40.3 2.7 21 59-79 3-23 (171)
321 TIGR02323 CP_lyasePhnK phospho 89.7 0.25 5.4E-06 44.5 2.6 24 57-80 30-53 (253)
322 PRK11231 fecE iron-dicitrate t 89.7 0.24 5.3E-06 44.8 2.5 23 58-80 30-52 (255)
323 PRK11831 putative ABC transpor 89.7 0.24 5.2E-06 45.4 2.5 23 58-80 35-57 (269)
324 TIGR02769 nickel_nikE nickel i 89.7 0.24 5.3E-06 45.2 2.6 24 57-80 38-61 (265)
325 TIGR01277 thiQ thiamine ABC tr 89.7 0.26 5.7E-06 43.3 2.6 25 57-81 25-49 (213)
326 CHL00131 ycf16 sulfate ABC tra 89.6 0.23 4.9E-06 44.7 2.3 23 57-79 34-56 (252)
327 cd00879 Sar1 Sar1 subfamily. 89.6 0.26 5.6E-06 41.8 2.5 21 58-78 21-41 (190)
328 PRK10771 thiQ thiamine transpo 89.6 0.25 5.4E-06 44.0 2.5 24 57-80 26-49 (232)
329 PRK09580 sufC cysteine desulfu 89.6 0.23 4.9E-06 44.5 2.3 23 57-79 28-50 (248)
330 cd03248 ABCC_TAP TAP, the Tran 89.6 0.28 6E-06 43.4 2.8 24 57-80 41-64 (226)
331 COG4559 ABC-type hemin transpo 89.6 0.23 5E-06 46.2 2.3 29 54-82 25-53 (259)
332 PRK14237 phosphate transporter 89.6 0.29 6.2E-06 44.9 2.9 24 57-80 47-70 (267)
333 PRK11614 livF leucine/isoleuci 89.6 0.23 5.1E-06 44.2 2.3 23 58-80 33-55 (237)
334 PRK13638 cbiO cobalt transport 89.5 0.24 5.2E-06 45.4 2.4 23 58-80 29-51 (271)
335 PRK14244 phosphate ABC transpo 89.5 0.29 6.4E-06 44.1 2.9 23 58-80 33-55 (251)
336 PRK06762 hypothetical protein; 89.5 0.35 7.5E-06 40.6 3.2 23 58-80 4-26 (166)
337 cd01896 DRG The developmentall 89.5 0.24 5.2E-06 44.9 2.3 23 57-79 1-23 (233)
338 cd01672 TMPK Thymidine monopho 89.5 0.35 7.6E-06 40.8 3.2 25 58-82 2-26 (200)
339 PF06309 Torsin: Torsin; Inte 89.5 0.71 1.5E-05 39.0 5.0 42 40-83 39-80 (127)
340 PLN02348 phosphoribulokinase 89.5 0.33 7.2E-06 48.2 3.4 28 55-82 48-75 (395)
341 COG4136 ABC-type uncharacteriz 89.4 0.31 6.8E-06 43.4 2.9 26 57-82 29-54 (213)
342 PRK14238 phosphate transporter 89.4 0.3 6.4E-06 44.9 2.9 24 57-80 51-74 (271)
343 PRK13646 cbiO cobalt transport 89.4 0.27 5.8E-06 45.6 2.7 25 57-81 34-58 (286)
344 TIGR01313 therm_gnt_kin carboh 89.4 0.26 5.6E-06 41.3 2.3 23 59-81 1-23 (163)
345 PF13086 AAA_11: AAA domain; P 89.4 0.43 9.4E-06 40.8 3.8 23 58-80 19-41 (236)
346 PRK14243 phosphate transporter 89.4 0.3 6.6E-06 44.6 2.9 23 57-79 37-59 (264)
347 cd03290 ABCC_SUR1_N The SUR do 89.4 0.28 6.1E-06 43.2 2.6 24 57-80 28-51 (218)
348 cd03247 ABCC_cytochrome_bd The 89.4 0.29 6.4E-06 41.8 2.7 22 58-79 30-51 (178)
349 cd03300 ABC_PotA_N PotA is an 89.3 0.29 6.2E-06 43.7 2.7 25 56-80 26-50 (232)
350 PRK07429 phosphoribulokinase; 89.3 0.34 7.4E-06 46.6 3.3 28 54-81 6-33 (327)
351 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 89.3 0.27 5.8E-06 43.9 2.5 24 57-80 49-72 (224)
352 PRK14266 phosphate ABC transpo 89.3 0.31 6.7E-06 43.8 2.9 23 57-79 30-52 (250)
353 cd03228 ABCC_MRP_Like The MRP 89.3 0.31 6.6E-06 41.5 2.7 24 57-80 29-52 (171)
354 PRK13640 cbiO cobalt transport 89.3 0.28 6.1E-06 45.4 2.7 24 57-80 34-57 (282)
355 cd00878 Arf_Arl Arf (ADP-ribos 89.3 0.27 5.9E-06 40.1 2.3 21 59-79 2-22 (158)
356 cd01897 NOG NOG1 is a nucleola 89.3 0.3 6.4E-06 40.2 2.6 22 58-79 2-23 (168)
357 PRK10619 histidine/lysine/argi 89.3 0.28 6.1E-06 44.4 2.6 24 57-80 32-55 (257)
358 KOG2485|consensus 89.3 0.84 1.8E-05 44.3 5.9 25 57-81 144-168 (335)
359 PRK13644 cbiO cobalt transport 89.3 0.28 6.1E-06 45.2 2.7 24 57-80 29-52 (274)
360 PRK13641 cbiO cobalt transport 89.3 0.28 6.1E-06 45.5 2.7 25 57-81 34-58 (287)
361 PLN03046 D-glycerate 3-kinase; 89.3 0.33 7.3E-06 48.9 3.3 26 56-81 212-237 (460)
362 cd03250 ABCC_MRP_domain1 Domai 89.2 0.29 6.3E-06 42.6 2.6 23 58-80 33-55 (204)
363 cd03267 ABC_NatA_like Similar 89.2 0.28 6.1E-06 44.0 2.6 24 57-80 48-71 (236)
364 TIGR03771 anch_rpt_ABC anchore 89.2 0.29 6.2E-06 43.6 2.6 24 57-80 7-30 (223)
365 PRK13543 cytochrome c biogenes 89.2 0.29 6.2E-06 43.2 2.5 23 58-80 39-61 (214)
366 TIGR00017 cmk cytidylate kinas 89.2 0.35 7.7E-06 43.6 3.2 24 58-81 4-27 (217)
367 cd01857 HSR1_MMR1 HSR1/MMR1. 89.2 0.28 6.1E-06 40.4 2.4 22 58-79 85-106 (141)
368 TIGR01188 drrA daunorubicin re 89.2 0.28 6E-06 45.9 2.6 25 57-81 20-44 (302)
369 PRK13643 cbiO cobalt transport 89.0 0.29 6.3E-06 45.5 2.6 23 58-80 34-56 (288)
370 PRK14265 phosphate ABC transpo 89.0 0.31 6.6E-06 45.0 2.7 23 58-80 48-70 (274)
371 PRK14260 phosphate ABC transpo 89.0 0.34 7.3E-06 44.0 2.9 24 57-80 34-57 (259)
372 TIGR02868 CydC thiol reductant 89.0 0.28 6.1E-06 49.0 2.6 24 57-80 362-385 (529)
373 PRK10253 iron-enterobactin tra 88.9 0.28 6E-06 44.8 2.3 24 57-80 34-57 (265)
374 PRK13547 hmuV hemin importer A 88.9 0.29 6.3E-06 45.3 2.5 23 58-80 29-51 (272)
375 PRK14731 coaE dephospho-CoA ki 88.9 0.36 7.8E-06 42.9 3.0 23 57-79 6-28 (208)
376 PRK13635 cbiO cobalt transport 88.9 0.31 6.7E-06 45.1 2.6 24 58-81 35-58 (279)
377 cd03274 ABC_SMC4_euk Eukaryoti 88.9 0.34 7.4E-06 43.3 2.8 22 57-78 26-47 (212)
378 COG5019 CDC3 Septin family pro 88.9 1.2 2.6E-05 43.9 6.7 26 53-79 21-46 (373)
379 cd00880 Era_like Era (E. coli 88.8 0.2 4.4E-06 39.1 1.2 19 61-79 1-19 (163)
380 PRK09435 membrane ATPase/prote 88.8 0.62 1.4E-05 45.0 4.8 29 54-82 54-82 (332)
381 PRK14258 phosphate ABC transpo 88.8 0.32 7E-06 44.3 2.7 24 57-80 34-57 (261)
382 PRK13652 cbiO cobalt transport 88.8 0.32 6.8E-06 44.9 2.6 24 57-80 31-54 (277)
383 PRK13650 cbiO cobalt transport 88.8 0.32 6.9E-06 45.0 2.7 25 57-81 34-58 (279)
384 PRK14252 phosphate ABC transpo 88.8 0.33 7.2E-06 44.2 2.8 24 57-80 43-66 (265)
385 PRK04182 cytidylate kinase; Pr 88.7 0.41 8.9E-06 40.1 3.1 23 58-80 2-24 (180)
386 TIGR03411 urea_trans_UrtD urea 88.7 0.32 7E-06 43.4 2.5 24 57-80 29-52 (242)
387 smart00174 RHO Rho (Ras homolo 88.6 0.29 6.3E-06 40.5 2.1 21 59-79 1-21 (174)
388 cd04137 RheB Rheb (Ras Homolog 88.6 0.35 7.7E-06 40.5 2.6 21 59-79 4-24 (180)
389 TIGR01288 nodI ATP-binding ABC 88.6 0.32 7E-06 45.5 2.6 24 57-80 31-54 (303)
390 PF00910 RNA_helicase: RNA hel 88.6 0.35 7.6E-06 38.4 2.5 24 59-82 1-24 (107)
391 PF00071 Ras: Ras family; Int 88.6 0.38 8.2E-06 39.3 2.7 21 59-79 2-22 (162)
392 COG1763 MobB Molybdopterin-gua 88.6 0.41 8.9E-06 41.8 3.1 28 56-83 2-29 (161)
393 PRK14271 phosphate ABC transpo 88.6 0.34 7.3E-06 44.8 2.7 24 57-80 48-71 (276)
394 TIGR02982 heterocyst_DevA ABC 88.6 0.35 7.5E-06 42.7 2.6 24 57-80 32-55 (220)
395 PRK08118 topology modulation p 88.5 0.4 8.7E-06 41.3 2.9 24 59-82 4-27 (167)
396 PF05729 NACHT: NACHT domain 88.5 0.46 1E-05 38.6 3.2 25 58-82 2-26 (166)
397 PRK14275 phosphate ABC transpo 88.5 0.35 7.5E-06 45.0 2.7 23 57-79 66-88 (286)
398 PRK13631 cbiO cobalt transport 88.5 0.33 7.2E-06 46.2 2.6 24 57-80 53-76 (320)
399 cd04135 Tc10 TC10 subfamily. 88.5 0.37 8E-06 39.9 2.6 21 59-79 3-23 (174)
400 cd04157 Arl6 Arl6 subfamily. 88.5 0.32 6.9E-06 39.6 2.2 20 59-78 2-21 (162)
401 cd03213 ABCG_EPDR ABCG transpo 88.5 0.34 7.4E-06 42.3 2.5 24 57-80 36-59 (194)
402 PRK14254 phosphate ABC transpo 88.5 0.35 7.6E-06 45.0 2.7 24 57-80 66-89 (285)
403 PRK11153 metN DL-methionine tr 88.4 0.33 7.1E-06 46.5 2.6 24 57-80 32-55 (343)
404 PRK13647 cbiO cobalt transport 88.4 0.34 7.4E-06 44.6 2.6 25 57-81 32-56 (274)
405 PRK10418 nikD nickel transport 88.4 0.35 7.6E-06 43.8 2.6 24 57-80 30-53 (254)
406 PRK03695 vitamin B12-transport 88.4 0.31 6.7E-06 44.2 2.2 23 57-79 23-45 (248)
407 TIGR03873 F420-0_ABC_ATP propo 88.3 0.33 7.2E-06 43.9 2.4 24 57-80 28-51 (256)
408 PRK04213 GTP-binding protein; 88.3 0.33 7.1E-06 41.7 2.3 23 56-78 9-31 (201)
409 PRK13637 cbiO cobalt transport 88.3 0.35 7.6E-06 45.0 2.6 24 58-81 35-58 (287)
410 PRK14236 phosphate transporter 88.3 0.39 8.5E-06 44.1 2.9 24 57-80 52-75 (272)
411 PRK14246 phosphate ABC transpo 88.2 0.36 7.8E-06 44.1 2.6 23 58-80 38-60 (257)
412 PRK13642 cbiO cobalt transport 88.2 0.37 8E-06 44.4 2.7 24 58-81 35-58 (277)
413 cd04166 CysN_ATPS CysN_ATPS su 88.2 0.36 7.8E-06 42.5 2.5 21 59-79 2-22 (208)
414 cd03288 ABCC_SUR2 The SUR doma 88.1 0.4 8.6E-06 43.6 2.8 23 58-80 49-71 (257)
415 TIGR03015 pepcterm_ATPase puta 88.1 0.44 9.5E-06 42.8 3.0 25 57-81 44-68 (269)
416 cd04164 trmE TrmE (MnmE, ThdF, 88.1 0.38 8.2E-06 38.5 2.3 22 58-79 3-24 (157)
417 cd04132 Rho4_like Rho4-like su 88.0 0.42 9E-06 40.4 2.6 21 59-79 3-23 (187)
418 KOG0410|consensus 87.9 0.32 7E-06 47.6 2.2 27 52-78 174-200 (410)
419 cd01870 RhoA_like RhoA-like su 87.9 0.41 8.8E-06 39.7 2.5 21 59-79 4-24 (175)
420 PRK04040 adenylate kinase; Pro 87.9 0.49 1.1E-05 41.7 3.1 23 58-80 4-26 (188)
421 cd02027 APSK Adenosine 5'-phos 87.8 0.44 9.4E-06 40.1 2.7 24 58-81 1-24 (149)
422 TIGR01359 UMP_CMP_kin_fam UMP- 87.8 0.42 9.1E-06 40.6 2.6 23 58-80 1-23 (183)
423 cd04175 Rap1 Rap1 subgroup. T 87.8 0.44 9.6E-06 39.2 2.7 22 58-79 3-24 (164)
424 cd04125 RabA_like RabA-like su 87.8 0.42 9.1E-06 40.7 2.6 21 59-79 3-23 (188)
425 TIGR03269 met_CoM_red_A2 methy 87.8 0.4 8.8E-06 48.0 2.9 24 57-80 27-50 (520)
426 PRK14263 phosphate ABC transpo 87.7 0.43 9.3E-06 43.7 2.8 24 57-80 35-58 (261)
427 COG1132 MdlB ABC-type multidru 87.7 0.37 8.1E-06 48.7 2.6 25 58-82 357-381 (567)
428 PRK05541 adenylylsulfate kinas 87.7 0.53 1.2E-05 40.0 3.2 25 57-81 8-32 (176)
429 cd01889 SelB_euk SelB subfamil 87.7 0.42 9.1E-06 41.1 2.6 21 59-79 3-23 (192)
430 PRK13634 cbiO cobalt transport 87.7 0.4 8.7E-06 44.6 2.6 25 57-81 34-58 (290)
431 PRK10218 GTP-binding protein; 87.7 2.5 5.5E-05 44.1 8.6 24 56-79 5-28 (607)
432 PRK14257 phosphate ABC transpo 87.7 0.41 8.8E-06 45.8 2.7 24 57-80 109-132 (329)
433 PRK10938 putative molybdenum t 87.7 0.38 8.3E-06 47.7 2.6 25 57-81 30-54 (490)
434 COG1100 GTPase SAR1 and relate 87.6 0.38 8.3E-06 41.6 2.3 25 57-81 6-30 (219)
435 PRK14264 phosphate ABC transpo 87.6 0.42 9.2E-06 44.8 2.7 23 58-80 73-95 (305)
436 PRK05433 GTP-binding protein L 87.6 1.9 4.2E-05 44.7 7.7 24 56-79 7-30 (600)
437 cd03289 ABCC_CFTR2 The CFTR su 87.6 0.45 9.8E-06 44.4 2.8 23 58-80 32-54 (275)
438 cd04129 Rho2 Rho2 subfamily. 87.5 0.45 9.7E-06 40.7 2.6 21 58-78 3-23 (187)
439 PLN03108 Rab family protein; P 87.5 0.45 9.8E-06 41.8 2.7 23 57-79 7-29 (210)
440 PRK15093 antimicrobial peptide 87.5 0.43 9.3E-06 45.4 2.7 23 58-80 35-57 (330)
441 PF00437 T2SE: Type II/IV secr 87.5 0.54 1.2E-05 42.8 3.2 26 57-82 128-153 (270)
442 PRK11022 dppD dipeptide transp 87.4 0.42 9.1E-06 45.5 2.6 24 57-80 34-57 (326)
443 PRK00049 elongation factor Tu; 87.4 1.8 3.9E-05 42.4 7.0 27 53-79 9-35 (396)
444 PRK13546 teichoic acids export 87.4 0.42 9.1E-06 44.1 2.5 23 58-80 52-74 (264)
445 cd01892 Miro2 Miro2 subfamily. 87.4 0.61 1.3E-05 39.3 3.3 26 54-79 2-27 (169)
446 PLN03127 Elongation factor Tu; 87.4 2.7 5.9E-05 42.0 8.4 29 52-80 57-85 (447)
447 COG1121 ZnuC ABC-type Mn/Zn tr 87.4 0.44 9.4E-06 44.7 2.6 44 34-81 11-55 (254)
448 cd01673 dNK Deoxyribonucleosid 87.4 0.47 1E-05 40.8 2.6 23 58-80 1-23 (193)
449 TIGR00968 3a0106s01 sulfate AB 87.3 0.46 9.9E-06 42.6 2.7 24 57-80 27-50 (237)
450 cd03291 ABCC_CFTR1 The CFTR su 87.2 0.45 9.7E-06 44.5 2.6 24 57-80 64-87 (282)
451 cd01129 PulE-GspE PulE/GspE Th 87.2 0.47 1E-05 44.1 2.7 45 34-81 61-105 (264)
452 PRK11000 maltose/maltodextrin 87.2 0.43 9.4E-06 46.3 2.6 24 57-80 30-53 (369)
453 PRK15467 ethanolamine utilizat 87.2 0.39 8.4E-06 40.5 2.0 20 59-78 4-23 (158)
454 cd01855 YqeH YqeH. YqeH is an 87.1 0.5 1.1E-05 40.7 2.7 22 58-79 129-150 (190)
455 PRK13633 cobalt transporter AT 87.1 0.45 9.8E-06 43.9 2.6 24 58-81 38-61 (280)
456 cd04177 RSR1 RSR1 subgroup. R 87.1 0.52 1.1E-05 39.2 2.7 21 59-79 4-24 (168)
457 cd03272 ABC_SMC3_euk Eukaryoti 87.0 0.48 1E-05 42.2 2.6 20 58-77 25-44 (243)
458 PRK13639 cbiO cobalt transport 87.0 0.46 1E-05 43.7 2.6 23 58-80 30-52 (275)
459 KOG2655|consensus 87.0 1.6 3.4E-05 43.0 6.3 21 59-79 24-44 (366)
460 cd03283 ABC_MutS-like MutS-lik 86.9 0.52 1.1E-05 41.8 2.7 23 57-79 26-48 (199)
461 COG4107 PhnK ABC-type phosphon 86.9 0.46 1E-05 43.3 2.4 29 54-82 30-58 (258)
462 cd04128 Spg1 Spg1p. Spg1p (se 86.8 2.2 4.8E-05 36.7 6.6 21 59-79 3-23 (182)
463 PRK14737 gmk guanylate kinase; 86.8 0.94 2E-05 39.8 4.3 22 58-79 6-27 (186)
464 PRK13900 type IV secretion sys 86.8 0.5 1.1E-05 45.5 2.8 24 58-81 162-185 (332)
465 TIGR02142 modC_ABC molybdenum 86.8 0.48 1E-05 45.5 2.6 25 57-81 24-48 (354)
466 cd00267 ABC_ATPase ABC (ATP-bi 86.7 0.53 1.2E-05 39.3 2.6 24 57-80 26-49 (157)
467 PRK13636 cbiO cobalt transport 86.7 0.5 1.1E-05 43.8 2.6 24 58-81 34-57 (283)
468 smart00053 DYNc Dynamin, GTPas 86.7 0.44 9.6E-06 44.0 2.3 22 58-79 28-49 (240)
469 PRK14738 gmk guanylate kinase; 86.7 0.87 1.9E-05 40.3 4.1 23 57-79 14-36 (206)
470 TIGR00041 DTMP_kinase thymidyl 86.7 0.68 1.5E-05 39.7 3.3 25 58-82 5-29 (195)
471 cd04170 EF-G_bact Elongation f 86.7 0.54 1.2E-05 43.0 2.8 21 59-79 2-22 (268)
472 PLN03071 GTP-binding nuclear p 86.7 2.3 4.9E-05 37.8 6.7 26 54-79 11-36 (219)
473 COG1124 DppF ABC-type dipeptid 86.6 0.51 1.1E-05 44.2 2.6 26 57-82 34-59 (252)
474 PRK10851 sulfate/thiosulfate t 86.6 0.5 1.1E-05 45.7 2.6 24 57-80 29-52 (353)
475 TIGR03522 GldA_ABC_ATP gliding 86.6 0.51 1.1E-05 44.2 2.6 24 57-80 29-52 (301)
476 TIGR01186 proV glycine betaine 86.6 0.47 1E-05 46.2 2.5 24 58-81 21-44 (363)
477 PRK09554 feoB ferrous iron tra 86.6 1 2.2E-05 48.2 5.1 21 58-78 5-25 (772)
478 cd03279 ABC_sbcCD SbcCD and ot 86.5 0.54 1.2E-05 41.6 2.6 22 58-79 30-51 (213)
479 PRK10762 D-ribose transporter 86.5 0.47 1E-05 47.4 2.5 25 57-81 31-55 (501)
480 cd01881 Obg_like The Obg-like 86.4 0.34 7.5E-06 39.8 1.3 19 61-79 1-19 (176)
481 COG0486 ThdF Predicted GTPase 86.4 0.44 9.6E-06 48.0 2.3 24 59-82 220-243 (454)
482 PRK13549 xylose transporter AT 86.4 0.48 1E-05 47.4 2.5 24 57-80 32-55 (506)
483 COG0396 sufC Cysteine desulfur 86.4 0.49 1.1E-05 44.2 2.3 24 57-80 31-54 (251)
484 PRK00889 adenylylsulfate kinas 86.4 0.75 1.6E-05 39.0 3.4 28 55-82 3-30 (175)
485 PRK15134 microcin C ABC transp 86.3 0.51 1.1E-05 47.4 2.6 24 58-81 37-60 (529)
486 PRK11174 cysteine/glutathione 86.3 0.5 1.1E-05 47.9 2.5 24 57-80 377-400 (588)
487 TIGR03420 DnaA_homol_Hda DnaA 86.2 0.8 1.7E-05 40.0 3.6 43 37-81 21-63 (226)
488 PRK11144 modC molybdate transp 86.2 0.53 1.1E-05 45.3 2.6 23 58-80 26-48 (352)
489 PRK14730 coaE dephospho-CoA ki 86.2 0.68 1.5E-05 40.9 3.1 22 58-79 3-24 (195)
490 cd04158 ARD1 ARD1 subfamily. 86.1 0.55 1.2E-05 39.3 2.4 20 59-78 2-21 (169)
491 cd01893 Miro1 Miro1 subfamily. 86.1 0.63 1.4E-05 38.7 2.7 21 59-79 3-23 (166)
492 cd02022 DPCK Dephospho-coenzym 86.1 0.56 1.2E-05 40.4 2.5 21 58-78 1-21 (179)
493 PF07724 AAA_2: AAA domain (Cd 86.1 0.72 1.6E-05 40.1 3.1 28 54-81 1-28 (171)
494 PRK15439 autoinducer 2 ABC tra 86.0 0.53 1.1E-05 47.2 2.6 25 57-81 38-62 (510)
495 PRK10261 glutathione transport 86.0 0.5 1.1E-05 48.8 2.5 25 57-81 43-67 (623)
496 PRK08356 hypothetical protein; 86.0 0.62 1.3E-05 40.6 2.7 21 58-78 7-27 (195)
497 TIGR00750 lao LAO/AO transport 86.0 1.1 2.3E-05 42.1 4.5 30 53-82 31-60 (300)
498 cd03273 ABC_SMC2_euk Eukaryoti 85.9 0.64 1.4E-05 42.1 2.8 25 57-81 26-50 (251)
499 TIGR02633 xylG D-xylose ABC tr 85.9 0.52 1.1E-05 46.9 2.5 24 57-80 28-51 (500)
500 PRK13549 xylose transporter AT 85.8 0.53 1.2E-05 47.0 2.5 23 58-80 290-312 (506)
No 1
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=100.00 E-value=1.3e-43 Score=325.13 Aligned_cols=149 Identities=50% Similarity=0.725 Sum_probs=130.1
Q ss_pred CceEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCcccCCCCc
Q psy5031 32 KHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSE 111 (281)
Q Consensus 32 ~~~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~e 111 (281)
+++|++|+||++.| . ..++||+||||+|+||||||||||+|++
T Consensus 1 ~~~~~~~~~al~~l-~---~~~~~v~vvsi~G~~rtGKSfLln~l~~--------------------------------- 43 (260)
T PF02263_consen 1 DNKLELNEEALEIL-Q---QIDQPVAVVSIVGPYRTGKSFLLNQLLG--------------------------------- 43 (260)
T ss_dssp TTEEEE-HHHHHHH-C---TTTSBEEEEEEEEETTSSHHHHHHHHCC---------------------------------
T ss_pred CCeEEECHHHHHHH-h---cCCCCEEEEEeecCCccchHHHHHHHhc---------------------------------
Confidence 58999999999966 2 3689999999999999999999999942
Q ss_pred ccccceeeeeceEEeecCCcccchhhccCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccCCCCCCcccceEe
Q psy5031 112 RDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILM 191 (281)
Q Consensus 112 ~~t~gi~~~s~~~~~~~~~~~~~~~~r~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~~~~~~~TkGIWm 191 (281)
...||+|+++.++||+||||
T Consensus 44 ------------------------------------------------------------~~~gF~~~~~~~~~T~Giw~ 63 (260)
T PF02263_consen 44 ------------------------------------------------------------PQSGFSWGPTVEPCTKGIWM 63 (260)
T ss_dssp ------------------------------------------------------------BSSSSESSSCSSST-SCEEE
T ss_pred ------------------------------------------------------------ccccccccCCCCCCCcceee
Confidence 13799999999999999999
Q ss_pred eecceeecCCCCCceEEEEEecCCCCC-CCcCcccchhhHHHHHhhhhhhhhccCCCCChhhhhHhHHHHHHHHHHh---
Q psy5031 192 WSHVYIATLPTGEKAAVILLDTQGTFD-SESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLAL--- 267 (281)
Q Consensus 192 Ws~P~~~~~~~g~~v~VlLlDTEG~~d-~~~s~~~d~~IFaLs~LLSS~~IYNs~~~Ide~~L~~L~l~t~~a~~i~--- 267 (281)
|++| .+.+++++|+||||||++| ...+..+|++||+|++||||++|||+++.|++++|++|++++++|++|+
T Consensus 64 w~~~----~~~~~~~~v~llDteG~~~~~~~~~~~d~~if~Ls~LLSS~~IyN~~~~i~~~~l~~L~~~~~l~~~i~~~~ 139 (260)
T PF02263_consen 64 WSEP----LPDGEKVAVVLLDTEGLGDVEQSDEKYDAKIFALSMLLSSVLIYNSMGNIDEDDLDQLELFTELAKHIRVKY 139 (260)
T ss_dssp ECCE-----TTSTCEEEEEEEEECBTTTTCCCCHHCHHHHHHHHHH-SEEEEEECSSSSHHHHHCCHHHHHHHHHHHHTH
T ss_pred eecc----cccccceeEEEecchhccccccCcccccHHHHHHHHHHhCceeeCCCCccchhHHHHHHHHHHHHHHHHHhc
Confidence 9999 3688899999999999999 4556788999999999999999999999999999999999999998764
Q ss_pred -----hccCCCCCcccccC
Q psy5031 268 -----ADTGTKPFQRLQFL 281 (281)
Q Consensus 268 -----~~~~~~pfq~L~fl 281 (281)
.+....|||+|.||
T Consensus 140 ~~~~~~~~~~~~fp~l~wl 158 (260)
T PF02263_consen 140 GDSADSEDLGKPFPSLVWL 158 (260)
T ss_dssp HHHHHHHCTTTTCEEEEEE
T ss_pred ccccchhhhcccchHHHHH
Confidence 34468999999886
No 2
>KOG2037|consensus
Probab=100.00 E-value=1.6e-36 Score=302.75 Aligned_cols=214 Identities=46% Similarity=0.666 Sum_probs=192.3
Q ss_pred EEEEeCCCceEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCc
Q psy5031 25 QIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGF 104 (281)
Q Consensus 25 qLV~~~~~~~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~f 104 (281)
+.+..|..+++.+|| |++.+ + ...+||+||+|+|.||+||||+||.++.. ..+|
T Consensus 6 ~~~~~~~~~~l~~~p-a~~~l-~---~~~~p~~Vv~i~g~~~~gksfiln~la~~---------------------~~gf 59 (552)
T KOG2037|consen 6 MLLYENENGQLKVNP-ALEIL-Q---AIKQPVAVVAIVGLYRTGKSFILNQLAGK---------------------RIGF 59 (552)
T ss_pred hhhhhccccccccCc-chhHH-h---hccCCceEEEEEEEEcCCCceehhhhHhh---------------------hcCC
Confidence 344446789999999 99844 3 24689999999999999999999999754 3689
Q ss_pred ccCCCCcccccceeeeeceEEeecCCcccchhhccCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccCCCCCC
Q psy5031 105 SWRGGSERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSER 184 (281)
Q Consensus 105 ~~~~~~e~~t~gi~~~s~~~~~~~~~~~~~~~~r~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~~~~~~ 184 (281)
.+..++.|+|.|||||+.| .||||++|++|.++.-.++ +..+.+|.. ...++.+|.|+.++++
T Consensus 60 ~~~s~~~~~~~~~w~w~~p---------------~~k~~~~~l~Lld~eg~~~-~~~~~~w~~-~~~~l~~~~~~~~s~~ 122 (552)
T KOG2037|consen 60 SVASTDKPVTKGIWMWCVP---------------HGKSFLLNLVLLDTEGLKG-DNENDDWIF-ALAPLLSSTWVYGSEG 122 (552)
T ss_pred CcccccccceeeEEEEEee---------------cCCccchhhhhhccccccC-Cccchhhhh-ccchhhcceeeccCCc
Confidence 9999999999999999755 6899999999999731111 255789998 6788999999999999
Q ss_pred cccceEeeecceeecCCCCCceEEEEEecCCCCCCCcCcccchhhHHHHHhhhhhhhhccCCCCChhhhhHhHHHHHHHH
Q psy5031 185 DTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGR 264 (281)
Q Consensus 185 ~TkGIWmWs~P~~~~~~~g~~v~VlLlDTEG~~d~~~s~~~d~~IFaLs~LLSS~~IYNs~~~Ide~~L~~L~l~t~~a~ 264 (281)
.|.|||||+.||+.+.++|.++++.++||+|.++...+...+...|++++++||+.|||....|+++++++|++++++++
T Consensus 123 ~~~~~~~~~~~~~~~~~e~~k~~~~l~~~~~a~~~~~~~~~~~p~fa~tt~~~slqi~~~~q~i~ed~l~~l~l~~~~g~ 202 (552)
T KOG2037|consen 123 TINGIAMWQLPFVTELTEGIKVASSLMDTQGAFDDQSTFRSCFPDFALTTMDSSLQIYNDSQNIQEDDLQHLSLFTEYGR 202 (552)
T ss_pred ccchheecccceeeecCCcceeccccccccccccccccHHHhcchhhceeeeeehhhhcccCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCcccccC
Q psy5031 265 LALADTGTKPFQRLQFL 281 (281)
Q Consensus 265 ~i~~~~~~~pfq~L~fl 281 (281)
.+..+...+|||+|+||
T Consensus 203 ~~l~~~~~kp~q~L~~~ 219 (552)
T KOG2037|consen 203 LALAHLFKKPFQDLKFL 219 (552)
T ss_pred HHHHHhccCcHHHHHHH
Confidence 99999999999999985
No 3
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.97 E-value=2.3e-30 Score=232.66 Aligned_cols=104 Identities=40% Similarity=0.496 Sum_probs=93.6
Q ss_pred CCcccCCCCCCcccceEeeecceeecCCCCCceEEEEEecCCCCCCCcCc-ccchhhHHHHHhhhhhhhhccCCCCChhh
Q psy5031 174 EGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTV-RDCATVFALSTMLSSIQIYNLSQNIQEDD 252 (281)
Q Consensus 174 ~gF~~~~~~~~~TkGIWmWs~P~~~~~~~g~~v~VlLlDTEG~~d~~~s~-~~d~~IFaLs~LLSS~~IYNs~~~Ide~~ 252 (281)
.+|+++++..+||+|||||..|+.. +++.+|+||||||+.+.+++. .++++||+|++|+||++|||+.+.+++.+
T Consensus 32 ~~f~~~~~~~~~T~gi~~~~~~~~~----~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~~~~~ 107 (224)
T cd01851 32 SGFDVMDTSQQTTKGIWMWSVPFKL----GKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETILGDD 107 (224)
T ss_pred CCeEecCCCCCCccceEEEeccccC----CCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcccHHH
Confidence 5899999999999999999999964 566889999999999999988 89999999999999999999999999999
Q ss_pred hhHhHHHHHHH----HHHhhccCCCCCcccccC
Q psy5031 253 LQHLQLFTEYG----RLALADTGTKPFQRLQFL 281 (281)
Q Consensus 253 L~~L~l~t~~a----~~i~~~~~~~pfq~L~fl 281 (281)
+++|+.+++.+ +.+......+||++|.|+
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~v 140 (224)
T cd01851 108 LAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFV 140 (224)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhcccCCCceEEE
Confidence 99999999975 344556789999999874
No 4
>KOG2203|consensus
Probab=99.31 E-value=2.9e-12 Score=128.40 Aligned_cols=155 Identities=23% Similarity=0.386 Sum_probs=105.0
Q ss_pred CCCeeEEEEeCCCceEEeCHHHHHHHHcccCCC--CceEEEEEEecccccChhHHHHHHHHhhhhcccccCCCCCCCCCC
Q psy5031 20 QYGAIQIVKSEEKHKFILDYEALERILLQDHVK--DKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPD 97 (281)
Q Consensus 20 ~~~pvqLV~~~~~~~l~ln~eal~~il~~~~~~--~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~~~ 97 (281)
...+.||| +++++ +|..+|..+.+...+. +-.++||||.|++.||||+|||+|.+-
T Consensus 3 dr~stQlI--De~ke--Fn~s~l~~F~q~vgl~d~Gl~YhVVavmG~QSSGKSTLLN~LFgT------------------ 60 (772)
T KOG2203|consen 3 DRCSTQLI--DEEKE--FNVSGLDYFQQCVGLRDCGLSYHVVAVMGSQSSGKSTLLNHLFGT------------------ 60 (772)
T ss_pred Ccccceee--ccccc--cchhhHHHHHHHhcccccCcceeEEEEecCcccchHHHHHHHhcc------------------
Confidence 45678999 45555 7777887765532222 678999999999999999999999532
Q ss_pred CCCCCCcccCCCCcccccceeeeeceEEeecCCcccchhhccCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcc
Q psy5031 98 DVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFS 177 (281)
Q Consensus 98 ~~~~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~~~~~~r~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~gF~ 177 (281)
+|. +++||+
T Consensus 61 -----nF~---------------------------~MDA~~--------------------------------------- 69 (772)
T KOG2203|consen 61 -----NFR---------------------------EMDAFK--------------------------------------- 69 (772)
T ss_pred -----ChH---------------------------HHHhhh---------------------------------------
Confidence 111 233332
Q ss_pred cCCCCCCcccceEeeecceeecCCCCCceEEEEEecCCCCCCCc----CcccchhhHHHHHhhhhhhhhccC----CCCC
Q psy5031 178 WRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSES----TVRDCATVFALSTMLSSIQIYNLS----QNIQ 249 (281)
Q Consensus 178 ~~~~~~~~TkGIWmWs~P~~~~~~~g~~v~VlLlDTEG~~d~~~----s~~~d~~IFaLs~LLSS~~IYNs~----~~Id 249 (281)
|++..|+|||+-. ..|-+..+++||.||..+.++ +++..+.|||++ .|-++|.|.. |.-+
T Consensus 70 ---gRqQTTKGIWlar-------~~~i~p~i~vmDvEGTDGrERGEDqdFErksALFaia--vSevvivNMW~~qIG~~Q 137 (772)
T KOG2203|consen 70 ---GRQQTTKGIWLAR-------CAGIEPCILVMDVEGTDGRERGEDQDFERKSALFAIA--VSEVVIVNMWEHQIGLYQ 137 (772)
T ss_pred ---ccccccchhhHHh-------hcCCCCceEEEecccCCcccccccccHHHHhHHHHHh--hhheehhhHHHHHhhHhh
Confidence 3456899999842 134445699999999988866 556689999988 5999999973 3444
Q ss_pred hhhhhHhH----HHHHH----HH------HHhhccCCCCCcccc
Q psy5031 250 EDDLQHLQ----LFTEY----GR------LALADTGTKPFQRLQ 279 (281)
Q Consensus 250 e~~L~~L~----l~t~~----a~------~i~~~~~~~pfq~L~ 279 (281)
.+..--|. ++.++ -+ .|+++-+.+|.-+|.
T Consensus 138 ~aN~~LLKTVfeV~lrLF~~rk~k~~LlFVIRD~~~~TplenLe 181 (772)
T KOG2203|consen 138 GANMALLKTVFEVNLRLFSPRKNKTLLLFVIRDKTGVTPLENLE 181 (772)
T ss_pred ccCcHHHHHHHHHHHHHhCCCCCceEEEEEEecccCCCchHHhh
Confidence 44444333 22332 11 357777888887763
No 5
>KOG2037|consensus
Probab=99.28 E-value=3.2e-12 Score=128.85 Aligned_cols=116 Identities=29% Similarity=0.368 Sum_probs=99.7
Q ss_pred cCCCCCeeEEEEe--CCCceEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhhcccccCCCCCCC
Q psy5031 17 SLPQYGAIQIVKS--EEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWM 94 (281)
Q Consensus 17 ~~~~~~pvqLV~~--~~~~~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~ 94 (281)
....|.||+.|-. +.++.|.+|+.|++.|+.+....++|+++++++|.+|.||||++|++|+++.... -+..+.+|.
T Consensus 27 ~~~~p~~Vv~i~g~~~~gksfiln~la~~~~gf~~~s~~~~~~~~~w~w~~p~~k~~~~~l~Lld~eg~~-~~~~~~~w~ 105 (552)
T KOG2037|consen 27 AIKQPVAVVAIVGLYRTGKSFILNQLAGKRIGFSVASTDKPVTKGIWMWCVPHGKSFLLNLVLLDTEGLK-GDNENDDWI 105 (552)
T ss_pred hccCCceEEEEEEEEcCCCceehhhhHhhhcCCCcccccccceeeEEEEEeecCCccchhhhhhcccccc-CCccchhhh
Confidence 3567888888877 6788999999999999998888899999999999999999999999999987642 223456888
Q ss_pred CCCCCCCCCcccCCCCcccccceeeeeceEEeecCCcccc
Q psy5031 95 GPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKV 134 (281)
Q Consensus 95 ~~~~~~~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~~~ 134 (281)
. .-.+.-+|.|+.+.++.|.|||||++++++....|.++
T Consensus 106 ~-~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~k~ 144 (552)
T KOG2037|consen 106 F-ALAPLLSSTWVYGSEGTINGIAMWQLPFVTELTEGIKV 144 (552)
T ss_pred h-ccchhhcceeeccCCcccchheecccceeeecCCccee
Confidence 7 56788899999999999999999999999976666653
No 6
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=98.86 E-value=1.4e-09 Score=113.73 Aligned_cols=117 Identities=27% Similarity=0.424 Sum_probs=81.2
Q ss_pred chhhccCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccCC--CCCCcccceEeeecceeecCCCCCceEEEEE
Q psy5031 134 VSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRG--GSERDTTGILMWSHVYIATLPTGEKAAVILL 211 (281)
Q Consensus 134 ~~~~r~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~~--~~~~~TkGIWmWs~P~~~~~~~g~~v~VlLl 211 (281)
+|++.+|||+|||.|.+. .|.+.. ++.+||+||||-.-+... .....+++|
T Consensus 1 ~g~qssgkstlln~lf~t-----------------------~f~~m~~~~r~qtt~gi~~~~~~~~~----~~~~~~~v~ 53 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGT-----------------------QFDVMDESGRQQTTKGIWMAKAKEVE----SSESNILVL 53 (742)
T ss_pred CCCCCCcHHHHHHHHHCC-----------------------CccccccccccccchhhHHHhccccc----cCCCceEEE
Confidence 478899999999999884 466544 567899999995433321 223569999
Q ss_pred ecCCCCCCCc----CcccchhhHHHHHhhhhhhhhcc----CCCCChhhhhHh--------HHHHHHH----H-----HH
Q psy5031 212 DTQGTFDSES----TVRDCATVFALSTMLSSIQIYNL----SQNIQEDDLQHL--------QLFTEYG----R-----LA 266 (281)
Q Consensus 212 DTEG~~d~~~----s~~~d~~IFaLs~LLSS~~IYNs----~~~Ide~~L~~L--------~l~t~~a----~-----~i 266 (281)
|+||..+.++ ++++.+.||||+ +|.++|.|. .|..+.+.+.-| ++|..-. + .|
T Consensus 54 d~eg~d~~er~~~~~fe~~~alf~la--~s~~~iiN~w~~~iG~~~~an~~lLktvfevnl~lf~~~~~~~~k~~llfvi 131 (742)
T PF05879_consen 54 DVEGTDGRERGEDQDFERKSALFALA--VSDVLIINMWEHDIGRYQGANMGLLKTVFEVNLQLFGKSKSNDRKTLLLFVI 131 (742)
T ss_pred eCCCCCchhhccccchHHHHHHHHHH--hhhheeeehhhhhhhhhcccchHHHHHHHHHHHHHHhhcccCCCCceEEEEE
Confidence 9999988866 455678899887 599999999 355555555444 4442211 0 24
Q ss_pred hhccCCCCCcccc
Q psy5031 267 LADTGTKPFQRLQ 279 (281)
Q Consensus 267 ~~~~~~~pfq~L~ 279 (281)
+|+.+.+|+.+|.
T Consensus 132 RD~~~~tp~e~l~ 144 (742)
T PF05879_consen 132 RDHTGVTPLENLE 144 (742)
T ss_pred eeCCCCCcHHHHH
Confidence 7777778887663
No 7
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.70 E-value=0.00019 Score=62.41 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=18.5
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+++|..++|||.|+|.|++.
T Consensus 3 i~lvG~~g~GKSsl~N~ilg~ 23 (196)
T cd01852 3 LVLVGKTGAGKSATGNTILGR 23 (196)
T ss_pred EEEECCCCCCHHHHHHHhhCC
Confidence 678999999999999999743
No 8
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.65 E-value=0.00019 Score=63.91 Aligned_cols=60 Identities=25% Similarity=0.354 Sum_probs=30.4
Q ss_pred eEEEEEecCCCCCCCcCcccc-hhhHHHHHhhhh----hhhhcc-CCCCChhhhhHhHHHHHH-HHHH
Q psy5031 206 AAVILLDTQGTFDSESTVRDC-ATVFALSTMLSS----IQIYNL-SQNIQEDDLQHLQLFTEY-GRLA 266 (281)
Q Consensus 206 v~VlLlDTEG~~d~~~s~~~d-~~IFaLs~LLSS----~~IYNs-~~~Ide~~L~~L~l~t~~-a~~i 266 (281)
..|.++||+|+++...+...- ..|.. +..++. .+||=+ .+.+++.+...++.+.++ +..+
T Consensus 49 ~~v~VIDTPGl~d~~~~~~~~~~~i~~-~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~ 115 (212)
T PF04548_consen 49 RQVTVIDTPGLFDSDGSDEEIIREIKR-CLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI 115 (212)
T ss_dssp EEEEEEE--SSEETTEEHHHHHHHHHH-HHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG
T ss_pred eEEEEEeCCCCCCCcccHHHHHHHHHH-HHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH
Confidence 568999999998886642211 11211 112222 222222 237888888888777763 4433
No 9
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.39 E-value=0.0007 Score=53.65 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=18.3
Q ss_pred EEEecccccChhHHHHHHHH
Q psy5031 59 VSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~ 78 (281)
|+|+|+.++|||+|+|.|++
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999974
No 10
>COG1159 Era GTPase [General function prediction only]
Probab=97.14 E-value=0.001 Score=63.33 Aligned_cols=27 Identities=30% Similarity=0.273 Sum_probs=24.1
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..+...|||+|...+|||+|||+|+++
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~ 29 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQ 29 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcC
Confidence 356789999999999999999999865
No 11
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.02 E-value=0.0042 Score=57.30 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=21.9
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+-.-|.++|..++|||.|+|.|++.
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGE 54 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 45567889999999999999999753
No 12
>PRK00089 era GTPase Era; Reviewed
Probab=96.98 E-value=0.0029 Score=58.38 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=22.9
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+-.+|+|+|+.++|||+|+|.|++.
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~ 28 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQ 28 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999999999754
No 13
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=96.73 E-value=0.00086 Score=61.94 Aligned_cols=21 Identities=52% Similarity=0.898 Sum_probs=18.9
Q ss_pred CcccCCCCcccccceeeeece
Q psy5031 103 GFSWRGGSERDTTGILMWSHV 123 (281)
Q Consensus 103 ~f~~~~~~e~~t~gi~~~s~~ 123 (281)
+|+|+++.+|+|.|||||+.|
T Consensus 47 gF~~~~~~~~~T~Giw~w~~~ 67 (260)
T PF02263_consen 47 GFSWGPTVEPCTKGIWMWSEP 67 (260)
T ss_dssp SSESSSCSSST-SCEEEECCE
T ss_pred cccccCCCCCCCcceeeeecc
Confidence 489999999999999999988
No 14
>KOG4181|consensus
Probab=96.50 E-value=0.003 Score=61.83 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=36.5
Q ss_pred CeeEEEEeCCCceEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHh
Q psy5031 22 GAIQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 22 ~pvqLV~~~~~~~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
++++|| ++.|. +|..|.+.+.. ...+-||||.|+++||||+|||.|..+
T Consensus 163 ~s~~li--~d~g~--~~d~a~~ll~~-----~tdf~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 163 RSTPLI--VDNGI--FNDNARKLLHK-----TTDFTVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred CCccee--ecccc--hhhHHHHHhhc-----CCCeeEEEeecCCCccHHHHHHHHhcc
Confidence 355666 33343 67778875443 356999999999999999999999754
No 15
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.43 E-value=0.0051 Score=51.64 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=18.7
Q ss_pred eEEEEEEecccccChhHHHHHHHHhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
++.++.+....+.|..-|++.+..++
T Consensus 69 ~~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 69 PTIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cEEEEEeeccccccHHHHHHHHHHHH
Confidence 44456666777788888888887654
No 16
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=96.42 E-value=0.0051 Score=56.55 Aligned_cols=22 Identities=36% Similarity=0.366 Sum_probs=19.8
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.|+++|+..+|||+|+|+|++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~ 23 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQ 23 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999754
No 17
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=96.21 E-value=0.0018 Score=68.34 Aligned_cols=38 Identities=34% Similarity=0.441 Sum_probs=28.3
Q ss_pred ecccccChhHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCcccCC--CCcccccceeeeec
Q psy5031 62 AGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRG--GSERDTTGILMWSH 122 (281)
Q Consensus 62 ~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~e~~t~gi~~~s~ 122 (281)
.|++.||||+|||+|.+- .|++-+ +.+.+|+||||-..
T Consensus 1 ~g~qssgkstlln~lf~t-----------------------~f~~m~~~~r~qtt~gi~~~~~ 40 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGT-----------------------QFDVMDESGRQQTTKGIWMAKA 40 (742)
T ss_pred CCCCCCcHHHHHHHHHCC-----------------------CccccccccccccchhhHHHhc
Confidence 499999999999999642 244433 35579999999653
No 18
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=96.18 E-value=0.029 Score=47.81 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=20.8
Q ss_pred ceEEEEEEecccccChhHHHHHHHH
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
....-|.|+|+.++|||+|+|+|.+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~ 40 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTN 40 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 3445678999999999999999964
No 19
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.04 E-value=0.015 Score=48.84 Aligned_cols=26 Identities=4% Similarity=-0.012 Sum_probs=20.2
Q ss_pred eEEEEEEecccccChhHHHHHHHHhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+..++.+....+.|-..|++.++...
T Consensus 59 ~~~ii~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 59 PTIPFKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred CceEEEEeccCCcChhhHHHHHHHHh
Confidence 34567777778889999999988764
No 20
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=96.01 E-value=0.032 Score=58.71 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=19.9
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.-|.++|..+.|||.|+|.|++.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGe 141 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGE 141 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhcc
Confidence 35889999999999999999754
No 21
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.01 E-value=0.014 Score=58.53 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=20.2
Q ss_pred EEEecccccChhHHHHHHHHhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l 80 (281)
|+|+||-|||||+|+|+|.+.+
T Consensus 20 IGvvGpvrtGKSTfIn~fm~q~ 41 (492)
T TIGR02836 20 IGVVGPVRTGKSTFIKKFMELL 41 (492)
T ss_pred EEEEcCCCCChHHHHHHHHhhh
Confidence 6889999999999999999874
No 22
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.01 E-value=0.0043 Score=51.71 Aligned_cols=21 Identities=48% Similarity=0.683 Sum_probs=19.5
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|+|.+.+|||+|+|.|++.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~ 21 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGR 21 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTS
T ss_pred CEEEcCCCCCHHHHHHHHHhc
Confidence 789999999999999999875
No 23
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=95.98 E-value=0.061 Score=44.28 Aligned_cols=20 Identities=35% Similarity=0.404 Sum_probs=18.2
Q ss_pred EEEecccccChhHHHHHHHH
Q psy5031 59 VSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~ 78 (281)
|+|+|...+|||+|+|+|.+
T Consensus 3 v~ivG~~~~GKStl~~~l~~ 22 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISN 22 (170)
T ss_pred eEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999964
No 24
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=95.94 E-value=0.028 Score=46.17 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=17.5
Q ss_pred EEEecccccChhHHHHHHH
Q psy5031 59 VSVAGAFRKGKSFLLDFLL 77 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll 77 (281)
|.|+|+.++|||.|+++|.
T Consensus 3 i~vvG~~~~GKtsl~~~l~ 21 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFH 21 (164)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6789999999999999986
No 25
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=95.92 E-value=0.011 Score=51.21 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=18.9
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+++|...+|||+|.|+|.+.
T Consensus 3 ialvG~PNvGKStLfN~Ltg~ 23 (156)
T PF02421_consen 3 IALVGNPNVGKSTLFNALTGA 23 (156)
T ss_dssp EEEEESTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 789999999999999999654
No 26
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.74 E-value=0.0098 Score=51.93 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=19.0
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
++.++|+.+.|||+|+|.|+..
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5667899999999999999755
No 27
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.72 E-value=0.0096 Score=47.11 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.9
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
||.|+|+.+||||++++.|.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 789999999999999999998753
No 28
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=95.63 E-value=0.068 Score=44.60 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=19.3
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+++|...+|||+|+|+|+..
T Consensus 3 i~~vG~~~~GKssL~~~l~~~ 23 (179)
T cd01890 3 FSIIAHIDHGKSTLADRLLEL 23 (179)
T ss_pred EEEEeecCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 29
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=95.56 E-value=0.036 Score=51.68 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=18.8
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|.|+|+.++|||+|+|.|+..
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~ 27 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNT 27 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcC
Confidence 4678999999999999999643
No 30
>PRK12289 GTPase RsgA; Reviewed
Probab=95.54 E-value=0.022 Score=55.33 Aligned_cols=21 Identities=38% Similarity=0.387 Sum_probs=16.1
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+.|+|+.+.|||+|+|.|+..
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCc
Confidence 677788888888888888643
No 31
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=95.45 E-value=0.14 Score=49.18 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=23.0
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+.+-.-|.|+|..+.|||.++|.|++.
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~ 61 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGE 61 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCC
Confidence 456667889999999999999999754
No 32
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=95.38 E-value=0.11 Score=45.52 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=18.1
Q ss_pred EEEecccccChhHHHHHHHH
Q psy5031 59 VSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~ 78 (281)
|+|+|..++|||.|+|+++.
T Consensus 3 I~ivG~~~vGKTsLi~~~~~ 22 (198)
T cd04142 3 VAVLGAPGVGKTAIVRQFLA 22 (198)
T ss_pred EEEECCCCCcHHHHHHHHHc
Confidence 68899999999999999864
No 33
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=95.35 E-value=0.037 Score=44.51 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=17.7
Q ss_pred EEEecccccChhHHHHHHH
Q psy5031 59 VSVAGAFRKGKSFLLDFLL 77 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll 77 (281)
|+++|+.++|||+|+|.|.
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 6889999999999999997
No 34
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.22 E-value=0.013 Score=53.78 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.1
Q ss_pred EEEEecccccChhHHHHHHHH
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~ 78 (281)
+|+|+||.+||||+|||.+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999999943
No 35
>PRK12288 GTPase RsgA; Reviewed
Probab=95.21 E-value=0.024 Score=54.87 Aligned_cols=21 Identities=33% Similarity=0.297 Sum_probs=16.4
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+.++|+.+.|||+|+|.|+..
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred EEEECCCCCCHHHHHHHhccc
Confidence 567888888888888888644
No 36
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.21 E-value=0.017 Score=50.34 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=23.2
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
||+|+|+.+||||+|++.|...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 7999999999999999999998764
No 37
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=95.05 E-value=0.14 Score=50.23 Aligned_cols=24 Identities=21% Similarity=0.193 Sum_probs=21.6
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+|=|+++|...+|||+|+|.|.+.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~ 182 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAA 182 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCC
Confidence 777999999999999999999643
No 38
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=94.93 E-value=0.049 Score=47.44 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=17.2
Q ss_pred EEEEEecccccChhHHHHHHHH
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
..|+++|...+|||+|+|.|.+
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~ 139 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKR 139 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhC
Confidence 4577888888888888888864
No 39
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=94.84 E-value=0.075 Score=48.68 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=17.7
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
++.++|+.+.|||+|+|.|+..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 5567888888999999998755
No 40
>KOG1423|consensus
Probab=94.81 E-value=0.06 Score=52.17 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=23.8
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
++++-=|+|+|+...|||+|-|++++.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~ 95 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQ 95 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCC
Confidence 567777899999999999999999865
No 41
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=94.79 E-value=0.11 Score=42.25 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=18.5
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.++|+.++|||.|+|++...
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999999754
No 42
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=94.74 E-value=0.1 Score=42.74 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=18.6
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+.++|||.|+|+|+..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999999743
No 43
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=94.73 E-value=0.12 Score=45.15 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=18.8
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|+|+.++|||+|+|.|++.
T Consensus 4 I~i~G~~g~GKSSLin~L~g~ 24 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGV 24 (197)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 679999999999999999753
No 44
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=94.68 E-value=0.087 Score=49.17 Aligned_cols=27 Identities=7% Similarity=0.129 Sum_probs=21.2
Q ss_pred EEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
..++.|....+.|..-|++.+...+..
T Consensus 81 ~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 81 IKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred CeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 445677778889999999999887654
No 45
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=94.67 E-value=0.11 Score=42.73 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=19.6
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.=|.|+|+.++|||+|+|++...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~ 26 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRN 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 34779999999999999999643
No 46
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.64 E-value=0.025 Score=51.45 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.8
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+|+|+||.++|||+|||.+......
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCC
Confidence 6889999999999999999887543
No 47
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=94.60 E-value=0.11 Score=42.28 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=18.5
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.++|+..+|||.|+|+|+..
T Consensus 3 i~liG~~~~GKSsli~~l~~~ 23 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 678999999999999999643
No 48
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.54 E-value=0.13 Score=42.59 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=18.8
Q ss_pred EEEEEecccccChhHHHHHHHH
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
.-|.|+|+.++|||+|++++..
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 4577889999999999999854
No 49
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=94.45 E-value=0.14 Score=41.69 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=18.1
Q ss_pred EEEecccccChhHHHHHHHH
Q psy5031 59 VSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~ 78 (281)
|.++|..++|||.|+|++..
T Consensus 3 v~~vG~~~~GKTsl~~~~~~ 22 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVK 22 (162)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999964
No 50
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.41 E-value=0.043 Score=48.30 Aligned_cols=28 Identities=11% Similarity=0.290 Sum_probs=24.3
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
++-.||+|+|+.++|||+|++.|.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999998754
No 51
>PRK15494 era GTPase Era; Provisional
Probab=94.37 E-value=0.09 Score=50.38 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=22.7
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++..-|+|+|...+|||+|+|+|+..
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 345667899999999999999999743
No 52
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.36 E-value=0.031 Score=48.56 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=21.5
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
||+|+|+.++|||+|++.|.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998876
No 53
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=94.30 E-value=0.18 Score=42.09 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=21.2
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+.=|.|+|+.++|||.|+|++++.
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3566899999999999999999643
No 54
>PRK00098 GTPase RsgA; Reviewed
Probab=94.20 E-value=0.079 Score=49.83 Aligned_cols=22 Identities=41% Similarity=0.369 Sum_probs=16.2
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
++.++|+.+.|||+|+|.|++.
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 4557788888888888888643
No 55
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=94.20 E-value=0.19 Score=42.01 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.0
Q ss_pred EEEEEEecccccChhHHHHHHHH
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
+.-|.++|+..+|||.|+|+++.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~ 24 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA 24 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35688999999999999999964
No 56
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.10 E-value=0.045 Score=48.03 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=23.5
Q ss_pred eEEEEEEecccccChhHHHHHHHHhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+--+|+|+|+.+||||+|++.|.+.+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999886
No 57
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=94.09 E-value=0.036 Score=45.03 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEecccccChhHHHHHHHH
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~ 78 (281)
+|+|+|...+|||+|+|+|.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 789999999999999999974
No 58
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=94.04 E-value=0.26 Score=45.71 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=20.3
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.++.|....+.|-.-|++.+...+..
T Consensus 79 ~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 79 KALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 45666677888999999999988643
No 59
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.00 E-value=0.038 Score=49.83 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=22.1
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
||+|+|+.++|||+|++.|...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999998874
No 60
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.95 E-value=0.05 Score=42.70 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=20.4
Q ss_pred EEEecccccChhHHHHHHHHhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l 80 (281)
|.|.|+.+||||+|++.|...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999884
No 61
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=93.94 E-value=0.12 Score=41.49 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=17.0
Q ss_pred EEecccccChhHHHHHHHHh
Q psy5031 60 SVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 60 sI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++|..++|||.|+|+|++.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~ 20 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGR 20 (157)
T ss_pred CccCCCCCCHHHHHHHHhCC
Confidence 47899999999999999643
No 62
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=93.89 E-value=0.17 Score=41.99 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=19.0
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
=|.|+|+.++|||.|+|++...
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~ 24 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADD 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999643
No 63
>PRK08233 hypothetical protein; Provisional
Probab=93.86 E-value=0.052 Score=45.75 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.3
Q ss_pred EEEEEEecccccChhHHHHHHHHhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.-||+|.|+.+||||+|+++|...+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998763
No 64
>PTZ00301 uridine kinase; Provisional
Probab=93.85 E-value=0.052 Score=48.95 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=23.3
Q ss_pred eEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
|.-||+|+|+.+||||+|.+.|.+.+.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 346899999999999999999887653
No 65
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=93.84 E-value=0.21 Score=41.42 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.3
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.++|..++|||+|+++++..
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678899999999999999753
No 66
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=93.83 E-value=0.18 Score=41.85 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.2
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+.++|||.|+|++...
T Consensus 5 i~iiG~~~vGKTsli~~~~~~ 25 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTEK 25 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 678899999999999999643
No 67
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=93.77 E-value=0.046 Score=43.74 Aligned_cols=23 Identities=35% Similarity=0.379 Sum_probs=20.3
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-+|+++|+.++|||+|+|+|++.
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999754
No 68
>PRK06696 uridine kinase; Validated
Probab=93.75 E-value=0.1 Score=46.63 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=25.0
Q ss_pred eEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
...+|+|.|+.+||||+|++.|.+.+..
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999998753
No 69
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=93.73 E-value=0.22 Score=41.27 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.0
Q ss_pred EEEEEecccccChhHHHHHHHH
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
.-|.|+|+.++|||.|+|++++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~ 27 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVT 27 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4577889999999999999964
No 70
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=93.73 E-value=0.22 Score=41.07 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=19.5
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.=|.|+|+.++|||.|+|++...
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 44788999999999999999643
No 71
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=93.73 E-value=0.32 Score=40.60 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=20.1
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+.-|.++|+.++|||.|+|++...
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~ 27 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDN 27 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 445679999999999999999654
No 72
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=93.70 E-value=0.066 Score=46.08 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=24.4
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
|++-.|+|+|...+|||+|++.|+.+.
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~ 27 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKA 27 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhc
Confidence 468899999999999999999999774
No 73
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.69 E-value=0.046 Score=50.97 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.4
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
-+|||+||.++|||+|||.+.+-...
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 37899999999999999999876544
No 74
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.68 E-value=0.098 Score=46.91 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=26.6
Q ss_pred CceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+.+..+|+|+|+.++|||+|++.|.+.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 456799999999999999999999988754
No 75
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=93.68 E-value=0.14 Score=44.05 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=20.4
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+.-|+++|...+|||+|+|+|+..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~ 25 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQ 25 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHH
Confidence 345888999999999999999863
No 76
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.66 E-value=0.061 Score=42.04 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=19.1
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+.++|||+|+++|++.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 678999999999999999865
No 77
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.65 E-value=0.045 Score=43.64 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=18.8
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|+|+.++|||.|+|+|.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999654
No 78
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=93.61 E-value=0.23 Score=41.26 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=19.7
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.=|.++|+.++|||.|+|++...
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45789999999999999999743
No 79
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.56 E-value=0.064 Score=39.56 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=21.0
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|+|+..+|||++++.|.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998875
No 80
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=93.56 E-value=0.26 Score=41.40 Aligned_cols=21 Identities=19% Similarity=0.176 Sum_probs=18.7
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+.++|||.|+|++++.
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTG 23 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 788999999999999999754
No 81
>COG1084 Predicted GTPase [General function prediction only]
Probab=93.43 E-value=0.18 Score=48.93 Aligned_cols=42 Identities=24% Similarity=0.196 Sum_probs=27.3
Q ss_pred EEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHH
Q psy5031 35 FILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLL 77 (281)
Q Consensus 35 l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll 77 (281)
|..-.+|-+.+..-+.+ |--.-=|-|+|+...|||+|++.+-
T Consensus 148 L~fL~~~r~~l~~LP~I-dp~~pTivVaG~PNVGKSSlv~~lT 189 (346)
T COG1084 148 LEFLRKARDHLKKLPAI-DPDLPTIVVAGYPNVGKSSLVRKLT 189 (346)
T ss_pred HHHHHHHHHHHhcCCCC-CCCCCeEEEecCCCCcHHHHHHHHh
Confidence 33444555555444443 3234456689999999999999994
No 82
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=93.39 E-value=0.54 Score=38.78 Aligned_cols=20 Identities=40% Similarity=0.419 Sum_probs=18.0
Q ss_pred EEEecccccChhHHHHHHHH
Q psy5031 59 VSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~ 78 (281)
|.|+|+..+|||.|+++++.
T Consensus 2 i~vvG~~~~GKtsli~~~~~ 21 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLT 21 (165)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 67899999999999999864
No 83
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.37 E-value=0.075 Score=44.80 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=23.3
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
||+|+|+..||||+|+..|++++..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~ 26 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKR 26 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhH
Confidence 7999999999999999999999864
No 84
>PRK07667 uridine kinase; Provisional
Probab=93.34 E-value=0.15 Score=44.76 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=25.7
Q ss_pred CCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 52 KDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+++ .||+|.|+.+||||+|.+.|...+..
T Consensus 14 ~~~~-~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 14 KENR-FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred CCCC-EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445 89999999999999999999988753
No 85
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=93.30 E-value=0.22 Score=42.81 Aligned_cols=21 Identities=29% Similarity=0.183 Sum_probs=18.5
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+.++|||.|+|++...
T Consensus 3 i~vvG~~~vGKTSli~~~~~~ 23 (191)
T cd04112 3 VMLLGDSGVGKTCLLVRFKDG 23 (191)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 678899999999999999643
No 86
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=93.30 E-value=0.12 Score=47.81 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=32.1
Q ss_pred HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhhc
Q psy5031 40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFT 83 (281)
Q Consensus 40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~ 83 (281)
++|..++.+. ...+-.+|++.|+-++|||++||.+.+++...
T Consensus 6 ~~la~~I~~~--~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 6 KALAEIIKNP--DSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHhcc--CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4555566532 22567889999999999999999999887653
No 87
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.29 E-value=0.055 Score=43.68 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.2
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 67889999999999999997654
No 88
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=93.27 E-value=0.26 Score=46.09 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=17.6
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+++++|+.+.|||+|+|.|+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhch
Confidence 35677888888888888888654
No 89
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=93.25 E-value=0.059 Score=44.34 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.6
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|+|+|+.++|||+|+|++.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999765
No 90
>PRK00093 GTP-binding protein Der; Reviewed
Probab=93.21 E-value=0.34 Score=47.22 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=13.0
Q ss_pred cchhhccCchhHHHHHHhh
Q psy5031 133 KVSAFRKGKSFLLDFLLRY 151 (281)
Q Consensus 133 ~~~~~r~gkS~Lln~l~~~ 151 (281)
.+|.-..|||.|+|.|++.
T Consensus 178 ivG~~n~GKStlin~ll~~ 196 (435)
T PRK00093 178 IIGRPNVGKSSLINALLGE 196 (435)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4566677777777777653
No 91
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=93.16 E-value=0.3 Score=42.94 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=18.1
Q ss_pred EEEecccccChhHHHHHHHH
Q psy5031 59 VSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~ 78 (281)
|.|+|+.++|||+|+|+|..
T Consensus 3 i~ivG~~~vGKSsLi~~l~~ 22 (215)
T cd04109 3 IVVLGDGAVGKTSLCRRFAK 22 (215)
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 67899999999999999964
No 92
>PF13173 AAA_14: AAA domain
Probab=93.07 E-value=0.092 Score=42.73 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.4
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
++.|.|+-|+|||+|+.++++++.
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 578899999999999999998754
No 93
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.04 E-value=0.34 Score=48.53 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=24.5
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
++-.||.++|++++|||+++..|..++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3457999999999999999999998764
No 94
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.03 E-value=0.11 Score=40.28 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
..+-|.|+.++|||+|++.+.+.+
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 456689999999999999999875
No 95
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.02 E-value=0.062 Score=46.41 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=23.8
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..++..|+|+|+.++|||+|+|++.+.
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcc
Confidence 356789999999999999999999764
No 96
>PLN03118 Rab family protein; Provisional
Probab=93.01 E-value=0.33 Score=42.47 Aligned_cols=22 Identities=27% Similarity=0.233 Sum_probs=18.7
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|.|+|+..+|||.|+|+|+..
T Consensus 16 kv~ivG~~~vGKTsli~~l~~~ 37 (211)
T PLN03118 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3668899999999999999743
No 97
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=93.01 E-value=0.078 Score=41.59 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=19.1
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|+++|..++|||+|+|+++..
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3788999999999999999754
No 98
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=93.00 E-value=0.44 Score=46.21 Aligned_cols=19 Identities=32% Similarity=0.272 Sum_probs=14.6
Q ss_pred cchhhccCchhHHHHHHhh
Q psy5031 133 KVSAFRKGKSFLLDFLLRY 151 (281)
Q Consensus 133 ~~~~~r~gkS~Lln~l~~~ 151 (281)
.+|.-..|||.|+|.|++.
T Consensus 177 ivG~~~~GKSsLin~l~~~ 195 (429)
T TIGR03594 177 IIGRPNVGKSTLVNALLGE 195 (429)
T ss_pred EECCCCCCHHHHHHHHHCC
Confidence 4577788888888888763
No 99
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=92.99 E-value=0.23 Score=46.70 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.0
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|=|+|+.++|||+|+|-|++.
T Consensus 7 ImVvG~sG~GKTTFIntL~~~ 27 (281)
T PF00735_consen 7 IMVVGESGLGKTTFINTLFNS 27 (281)
T ss_dssp EEEEECTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 447899999999999999764
No 100
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=92.89 E-value=0.33 Score=41.35 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=18.7
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+.++|||.|+|+++..
T Consensus 3 i~vvG~~~vGKSsLi~~~~~~ 23 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHH 23 (193)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999999753
No 101
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=92.79 E-value=0.09 Score=41.77 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=18.7
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.++|+.++|||+|+|++...
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999999754
No 102
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.77 E-value=0.076 Score=49.76 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.3
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+++|+||.++|||+||..|++.+..
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCC
Confidence 47899999999999999999998754
No 103
>PLN02318 phosphoribulokinase/uridine kinase
Probab=92.77 E-value=0.13 Score=53.69 Aligned_cols=45 Identities=24% Similarity=0.442 Sum_probs=36.1
Q ss_pred CceEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhh
Q psy5031 32 KHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 32 ~~~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
|..|-+--.|++.+.. .+....||+|+|+.++|||+|++.|.+.+
T Consensus 45 d~g~~~~ira~qlL~~----~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 45 EKGFFVVIRACQLLAQ----KNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred ccchhhhhHHHHHHHh----cCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 4567777788885543 34467899999999999999999998765
No 104
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=92.66 E-value=0.3 Score=42.36 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=20.6
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+.=|.|+|+.++|||.|++++++.
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~ 29 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADN 29 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999754
No 105
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.64 E-value=0.14 Score=42.90 Aligned_cols=31 Identities=23% Similarity=0.196 Sum_probs=20.9
Q ss_pred CCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 52 KDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
....-.++-|.|+.++|||+|++.++.++..
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3555688999999999999999999988654
No 106
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=92.64 E-value=0.077 Score=42.78 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=18.5
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.++|..++|||.|+|+|.+.
T Consensus 3 v~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 679999999999999999643
No 107
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.63 E-value=0.078 Score=44.60 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=17.7
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|.|...||||+|++.|..+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999876
No 108
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.59 E-value=0.088 Score=48.71 Aligned_cols=22 Identities=41% Similarity=0.397 Sum_probs=19.1
Q ss_pred EEEEEecccccChhHHHHHHHH
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
-||+|+||.+||||+||.-|++
T Consensus 29 evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4788999999999999988753
No 109
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.57 E-value=0.087 Score=46.95 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.3
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+|+.++|||+||+.|.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999987643
No 110
>COG1161 Predicted GTPases [General function prediction only]
Probab=92.56 E-value=0.66 Score=44.35 Aligned_cols=21 Identities=43% Similarity=0.430 Sum_probs=17.5
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|...+|||+|+|.|+..
T Consensus 135 v~vvG~PNVGKSslIN~L~~k 155 (322)
T COG1161 135 VGVVGYPNVGKSTLINRLLGK 155 (322)
T ss_pred EEEEcCCCCcHHHHHHHHhcc
Confidence 888888899999999988643
No 111
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.49 E-value=0.069 Score=45.87 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=22.6
Q ss_pred eEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+-.++.|+||-|+|||+|++.+++.+.
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 455677899999999999999998863
No 112
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=92.48 E-value=0.1 Score=42.11 Aligned_cols=21 Identities=33% Similarity=0.208 Sum_probs=18.9
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+.++|||.|+|+++..
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999754
No 113
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.45 E-value=0.11 Score=39.65 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.7
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+.|+||.+||||+|+..++..+..
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCC
Confidence 5789999999999999999887543
No 114
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=92.44 E-value=0.44 Score=41.27 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=18.4
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+.++|||+|+|+++..
T Consensus 3 ivivG~~~vGKTsli~~l~~~ 23 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVHG 23 (201)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 678999999999999999743
No 115
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=92.41 E-value=0.11 Score=46.29 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=26.0
Q ss_pred CCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 52 KDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+.--+-+|+|.|+-.||||+|.|+|.+.++.
T Consensus 4 rp~F~K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 4 RPFFVKTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred chhhheeeeeecCcccChHHHHHHHHHHhCC
Confidence 3445778999999999999999999987543
No 116
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=92.34 E-value=0.78 Score=42.70 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=19.1
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|+|...+|||+|.|+|+..
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~ 22 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYY 22 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999864
No 117
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.33 E-value=0.14 Score=45.19 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=25.5
Q ss_pred CceEEEEEEecccccChhHHHHHHHHhh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+-+-+|+++|+.++|||+|++++++.+
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5569999999999999999999999874
No 118
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.30 E-value=0.13 Score=43.84 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|+|+.++|||+|++.|...+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68899999999999999998764
No 119
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.29 E-value=0.1 Score=45.87 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998754
No 120
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.28 E-value=0.1 Score=45.85 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998764
No 121
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.26 E-value=0.13 Score=45.39 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=22.0
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+|.|+||.+||||++++.|++++.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 688999999999999999998864
No 122
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.26 E-value=0.11 Score=45.42 Aligned_cols=21 Identities=43% Similarity=0.447 Sum_probs=18.7
Q ss_pred EEEEEecccccChhHHHHHHH
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLL 77 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll 77 (281)
.+++|+||.++|||+|||.++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468899999999999999885
No 123
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=92.23 E-value=0.12 Score=41.82 Aligned_cols=21 Identities=38% Similarity=0.292 Sum_probs=18.8
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+.++|||+|+|+++..
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678899999999999999854
No 124
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.21 E-value=0.13 Score=48.91 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=28.2
Q ss_pred CCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 51 VKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 51 ~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+..+.+.+|.|+|+.++|||+||+.+++.+..
T Consensus 99 ~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 99 FAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34678999999999999999999999998643
No 125
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=92.20 E-value=0.068 Score=48.25 Aligned_cols=52 Identities=44% Similarity=0.630 Sum_probs=46.8
Q ss_pred CCceEEEEEEecccccChhHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCcccCCCCcccccceeeeeceE
Q psy5031 52 KDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVY 124 (281)
Q Consensus 52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~e~~t~gi~~~s~~~ 124 (281)
.++||+||||+|++|||||||||+|++. ..+|+++.+.++||+|||||..|+
T Consensus 3 ~~~~v~vvsv~G~~~sGKS~llN~l~~~---------------------~~~f~~~~~~~~~T~gi~~~~~~~ 54 (224)
T cd01851 3 AGFPVAVVSVFGPQSSGKSFLLNHLFGT---------------------LSGFDVMDTSQQTTKGIWMWSVPF 54 (224)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHhCC---------------------CCCeEecCCCCCCccceEEEeccc
Confidence 4789999999999999999999999754 257999999999999999998775
No 126
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.20 E-value=0.13 Score=41.50 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.1
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
||-++|+.+||||+|+..|.+.+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 678999999999999999987643
No 127
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=92.18 E-value=0.46 Score=41.58 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=19.8
Q ss_pred eEEEEEEecccccChhHHHHHHHH
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
+..-|+++|+.++|||+|+++++.
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~ 31 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLT 31 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHh
Confidence 445689999999999999987653
No 128
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=92.17 E-value=0.075 Score=40.83 Aligned_cols=19 Identities=42% Similarity=0.401 Sum_probs=17.2
Q ss_pred EecccccChhHHHHHHHHh
Q psy5031 61 VAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 61 I~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|+.++|||+|+|++.+.
T Consensus 1 iiG~~~~GKStl~~~l~~~ 19 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGG 19 (157)
T ss_pred CCCcCCCcHHHHHHHHHhC
Confidence 5899999999999999765
No 129
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.17 E-value=0.11 Score=44.87 Aligned_cols=23 Identities=39% Similarity=0.405 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|++..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998653
No 130
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=92.16 E-value=0.11 Score=42.39 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.4
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|.|+|+.++|||.|+|++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3788999999999999999764
No 131
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.15 E-value=0.11 Score=45.36 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998764
No 132
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.14 E-value=0.13 Score=43.59 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=22.1
Q ss_pred EEEEEEecccccChhHHHHHHHHhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+-+|.|+|+.+||||+|++.|...+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999999998764
No 133
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=92.10 E-value=0.13 Score=45.61 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.4
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+|++.|.+.+
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 378899999999999999998875
No 134
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.09 E-value=0.13 Score=45.35 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.9
Q ss_pred EEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
..|++|+|+.+||||+|+..|+..+..
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 348999999999999999999988754
No 135
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.09 E-value=0.13 Score=44.62 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.9
Q ss_pred EEEEEEecccccChhHHHHHHHHhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
=.+|+|+|+.++|||+|++.|++.+
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998864
No 136
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.09 E-value=0.11 Score=45.76 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999997654
No 137
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=92.07 E-value=0.12 Score=42.28 Aligned_cols=21 Identities=29% Similarity=0.162 Sum_probs=18.9
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|+|+.++|||+|+|++.+.
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 778999999999999999754
No 138
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=92.07 E-value=0.47 Score=41.94 Aligned_cols=22 Identities=32% Similarity=0.211 Sum_probs=18.9
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|.|+|+.++|||.|+|+|+..
T Consensus 4 KIvvvG~~~vGKTsLi~~l~~~ 25 (211)
T cd04111 4 RLIVIGDSTVGKSSLLKRFTEG 25 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3778999999999999999743
No 139
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=92.01 E-value=0.11 Score=43.08 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=20.4
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-.-|+|+|+.++|||+|+|+|.+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 345889999999999999999654
No 140
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.01 E-value=0.12 Score=45.19 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.9
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|.+.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78899999999999999998764
No 141
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.01 E-value=0.12 Score=45.28 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=20.9
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998753
No 142
>CHL00071 tufA elongation factor Tu
Probab=92.00 E-value=0.78 Score=45.02 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=23.9
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+|.--|+|+|...+|||+|+|+|+..
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~ 35 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMT 35 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 466777999999999999999999865
No 143
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.99 E-value=0.12 Score=44.87 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=22.1
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
||+|+|+.+||||+|++.|...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998864
No 144
>PRK05439 pantothenate kinase; Provisional
Probab=91.98 E-value=0.23 Score=47.60 Aligned_cols=40 Identities=28% Similarity=0.394 Sum_probs=29.4
Q ss_pred HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
++++.++... ..+.-.||+|+|+.++|||+|++.|...+.
T Consensus 72 ~~~~~fl~~~--~~~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 72 AALEQFLGKN--GQKVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred HHHHHHhccc--CCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455555422 234568999999999999999999987653
No 145
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=91.97 E-value=0.13 Score=42.81 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.3
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|+|...+|||+|+|.|+..
T Consensus 2 v~v~G~~~~GKStlln~l~~~ 22 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYV 22 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHh
Confidence 688999999999999999876
No 146
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=91.96 E-value=0.12 Score=45.49 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998764
No 147
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=91.94 E-value=0.25 Score=46.92 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=23.2
Q ss_pred CceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
..| -||+|+|+.++|||+|++.|...+.
T Consensus 60 ~~p-~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIP-YIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCC-EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344 6999999999999999988866553
No 148
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=91.92 E-value=0.12 Score=45.23 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|++.+
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78899999999999999998764
No 149
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=91.91 E-value=0.12 Score=46.80 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=21.6
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|++.+
T Consensus 31 e~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 31 SVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 578999999999999999998764
No 150
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=91.90 E-value=0.12 Score=43.10 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=20.4
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|+||.++|||+|++.|.+.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 47889999999999999998763
No 151
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.88 E-value=0.12 Score=46.13 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 378999999999999999998754
No 152
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=91.85 E-value=0.46 Score=41.82 Aligned_cols=21 Identities=43% Similarity=0.751 Sum_probs=18.9
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|+|...+|||+|+++|+..
T Consensus 3 v~iiG~~~~GKTtL~~~l~~~ 23 (213)
T cd04167 3 VAIAGHLHHGKTSLLDMLIEQ 23 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 678899999999999999875
No 153
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.85 E-value=0.11 Score=45.47 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=21.1
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|.+.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 88999999999999999998754
No 154
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=91.80 E-value=0.52 Score=45.67 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.4
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.|+|+|...+|||+|+|+|++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~ 22 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGK 22 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999754
No 155
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=91.79 E-value=0.14 Score=41.38 Aligned_cols=21 Identities=29% Similarity=0.245 Sum_probs=18.9
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|+|+.++|||+|+|+|++.
T Consensus 3 i~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 688999999999999999754
No 156
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=91.79 E-value=0.14 Score=43.86 Aligned_cols=25 Identities=24% Similarity=0.475 Sum_probs=22.8
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
||+|+|+.++|||+|+++|+..+..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~ 25 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKA 25 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999998754
No 157
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.79 E-value=0.13 Score=45.43 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999998754
No 158
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.78 E-value=0.16 Score=42.33 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=21.2
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
||.|.|+++||||++++.|.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999998764
No 159
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.77 E-value=0.13 Score=45.20 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|++.+
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 378899999999999999998764
No 160
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.77 E-value=0.13 Score=44.93 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998754
No 161
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=91.76 E-value=0.2 Score=48.31 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=21.2
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+-|.|+.+||||||+|.|..++..
T Consensus 24 ~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 24 NFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred EEEEEcCCCCChhHHHHHHHHHhcc
Confidence 4567899999999999999988654
No 162
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=91.76 E-value=0.14 Score=41.90 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=19.9
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+|+|+|..++|||.|+|+|...
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~ 23 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKT 23 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhc
Confidence 5899999999999999999754
No 163
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=91.75 E-value=0.13 Score=42.21 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=18.8
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+.++|||+|+|+|.+.
T Consensus 2 i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhh
Confidence 678999999999999999764
No 164
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.74 E-value=0.16 Score=37.77 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=21.2
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+..|.|+.++|||+||+.+.--|++
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6889999999999999999755544
No 165
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=91.74 E-value=0.14 Score=44.82 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|++..
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 468899999999999999998764
No 166
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.73 E-value=0.14 Score=45.07 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=23.2
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+ -+++|+|+.++|||+|++.|++.+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 36 899999999999999999998764
No 167
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=91.72 E-value=0.75 Score=40.64 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.4
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.-|+|+|...+|||+|+++|+..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~ 25 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKV 25 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999999865
No 168
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=91.71 E-value=0.13 Score=41.96 Aligned_cols=21 Identities=29% Similarity=0.167 Sum_probs=18.8
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+.++|||.|+|+|...
T Consensus 3 i~v~G~~~~GKSsli~~l~~~ 23 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999743
No 169
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=91.70 E-value=0.13 Score=45.36 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998764
No 170
>PRK09087 hypothetical protein; Validated
Probab=91.67 E-value=0.38 Score=43.56 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=37.2
Q ss_pred eeEEEEe---CCC---ceEEe---CHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHh
Q psy5031 23 AIQIVKS---EEK---HKFIL---DYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 23 pvqLV~~---~~~---~~l~l---n~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+-||+-. +.+ ..|.+ |..|+..+. +. .+++-..+.|+|+.++|||+|++.+...
T Consensus 5 ~~Ql~l~~~~~~~~~~~~Fi~~~~N~~a~~~l~-~~--~~~~~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 5 PEQLPLNFSHDPAYGRDDLLVTESNRAAVSLVD-HW--PNWPSPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CcceeeCCCCCCCCChhceeecCchHHHHHHHH-hc--ccCCCCeEEEECCCCCCHHHHHHHHHHh
Confidence 5566654 222 37777 788888543 21 2344446899999999999999988754
No 171
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.61 E-value=0.13 Score=45.68 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|++.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999998754
No 172
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=91.60 E-value=0.17 Score=41.28 Aligned_cols=23 Identities=26% Similarity=0.163 Sum_probs=20.0
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.=|.++|+.++|||+|+|++++.
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhC
Confidence 45789999999999999999754
No 173
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=91.60 E-value=0.13 Score=43.13 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=20.3
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..++. |.++|+.++|||.|+|+|...
T Consensus 12 ~~~~k-v~ivG~~~~GKTsL~~~l~~~ 37 (173)
T cd04154 12 EREMR-ILILGLDNAGKTTILKKLLGE 37 (173)
T ss_pred CCccE-EEEECCCCCCHHHHHHHHccC
Confidence 44443 559999999999999999643
No 174
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=91.60 E-value=0.22 Score=46.94 Aligned_cols=40 Identities=30% Similarity=0.410 Sum_probs=29.8
Q ss_pred HHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 39 YEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 39 ~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+.|+.+..+ ..+-.+|+|.|+.+.|||+|++.|..++..
T Consensus 16 ~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~~~~ 55 (266)
T PF03308_consen 16 RELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRELRE 55 (266)
T ss_dssp HHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHHHhh
Confidence 3556665542 335569999999999999999999998765
No 175
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.58 E-value=0.15 Score=43.30 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|+||.++|||+|++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 68899999999999999998753
No 176
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=91.58 E-value=0.7 Score=41.91 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=19.1
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|+|....|||+|++.|+..
T Consensus 3 vaiiGhvd~GKTTL~d~Ll~~ 23 (222)
T cd01885 3 ICIIAHVDHGKTTLSDSLLAS 23 (222)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788899999999999999865
No 177
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.55 E-value=0.14 Score=45.52 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.5
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+++|+|+.++|||+||+.|.+.+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3788999999999999999987643
No 178
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=91.54 E-value=0.13 Score=45.16 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.4
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|.+.+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68899999999999999997654
No 179
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=91.52 E-value=0.15 Score=45.89 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=20.7
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+++|+|+.++|||+||+.|.+.
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 33 QVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37899999999999999999875
No 180
>COG4240 Predicted kinase [General function prediction only]
Probab=91.51 E-value=0.16 Score=47.62 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=24.6
Q ss_pred EEEEEEecccccChhHHHHHHHHhhhhcc
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMNFTY 84 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~~~ 84 (281)
=-||+|+||++||||||.-.|-+.|..++
T Consensus 50 Pli~gisGpQGSGKStls~~i~~~L~~kg 78 (300)
T COG4240 50 PLIVGISGPQGSGKSTLSALIVRLLAAKG 78 (300)
T ss_pred ceEEEeecCCCCchhhHHHHHHHHHHHhc
Confidence 35899999999999999999888776653
No 181
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=91.50 E-value=0.14 Score=45.61 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998754
No 182
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.48 E-value=0.14 Score=45.23 Aligned_cols=23 Identities=30% Similarity=0.689 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|.+.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999998764
No 183
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=91.46 E-value=0.14 Score=44.59 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|++.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78899999999999999998764
No 184
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.45 E-value=0.15 Score=44.51 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.7
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+|++.|++..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999998653
No 185
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=91.42 E-value=0.15 Score=44.26 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|++.+
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998764
No 186
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=91.42 E-value=0.21 Score=41.17 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=22.9
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
++..-|.++|+.++|||+|++++...
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~ 30 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQG 30 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhC
Confidence 46788999999999999999999753
No 187
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=91.40 E-value=0.14 Score=45.29 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|++.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998764
No 188
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=91.38 E-value=0.15 Score=45.70 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998764
No 189
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.38 E-value=0.15 Score=45.02 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998754
No 190
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.36 E-value=0.15 Score=45.84 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.9
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+++|+|+.++|||+|++.|++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999875
No 191
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=91.36 E-value=0.14 Score=43.44 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=21.2
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
...-|+|+|..++|||+|+|.|++.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4455889999999999999999753
No 192
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.36 E-value=0.14 Score=44.82 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=20.9
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 378899999999999999998754
No 193
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=91.36 E-value=0.15 Score=44.49 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 578899999999999999998754
No 194
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=91.34 E-value=0.15 Score=45.07 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.5
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+|++.|.+.+
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 488999999999999999998764
No 195
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.30 E-value=0.16 Score=43.23 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.2
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-+++|+|+.++|||+|++.|.+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999765
No 196
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.29 E-value=0.15 Score=44.59 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.6
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|++.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998764
No 197
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=91.28 E-value=0.16 Score=44.23 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=21.6
Q ss_pred EEEEEEecccccChhHHHHHHHHhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
=.+++|+|+.++|||+|++.|.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999998754
No 198
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=91.28 E-value=0.18 Score=40.01 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.++.|.|+.++|||++++++++.+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhH
Confidence 3678899999999999999998764
No 199
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=91.27 E-value=0.15 Score=45.81 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-+++|+|+.++|||+|++.|.+.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 32 EITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999764
No 200
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=91.24 E-value=0.14 Score=45.48 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=21.0
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+||+.|.+.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC
Confidence 378999999999999999998754
No 201
>PRK03003 GTP-binding protein Der; Reviewed
Probab=91.23 E-value=1.2 Score=44.60 Aligned_cols=101 Identities=20% Similarity=0.148 Sum_probs=0.0
Q ss_pred EEEecccccChhHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCcccCCCCcccccceeeeeceEEeecCCcccchhhc
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFR 138 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~~~~~~r 138 (281)
|+|+|....|||+|+|+|++.
T Consensus 214 I~iiG~~nvGKSSLin~l~~~----------------------------------------------------------- 234 (472)
T PRK03003 214 VALVGKPNVGKSSLLNKLAGE----------------------------------------------------------- 234 (472)
T ss_pred EEEECCCCCCHHHHHHHHhCC-----------------------------------------------------------
Q ss_pred cCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccCCCCCCcccceEeeecceeecCCCCCceEEEEEecCCCCC
Q psy5031 139 KGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFD 218 (281)
Q Consensus 139 ~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~~~~~~~TkGIWmWs~P~~~~~~~g~~v~VlLlDTEG~~d 218 (281)
.....-...+++...-...+.+ +...+.|+||.|+..
T Consensus 235 --------------------------------~~~~~s~~~gtT~d~~~~~~~~-----------~~~~~~l~DTaG~~~ 271 (472)
T PRK03003 235 --------------------------------ERSVVDDVAGTTVDPVDSLIEL-----------GGKTWRFVDTAGLRR 271 (472)
T ss_pred --------------------------------CcccccCCCCccCCcceEEEEE-----------CCEEEEEEECCCccc
Q ss_pred CCcCcccchhhHHHHHhh------hhhhhhccCCCCChhhhhHhHHHHH
Q psy5031 219 SESTVRDCATVFALSTML------SSIQIYNLSQNIQEDDLQHLQLFTE 261 (281)
Q Consensus 219 ~~~s~~~d~~IFaLs~LL------SS~~IYNs~~~Ide~~L~~L~l~t~ 261 (281)
...........-.+.+.. .-.++|.....+..+++..+..+.+
T Consensus 272 ~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~ 320 (472)
T PRK03003 272 RVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE 320 (472)
T ss_pred cccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH
No 202
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=91.22 E-value=0.15 Score=45.41 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998764
No 203
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.22 E-value=0.16 Score=44.07 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|++.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78899999999999999998753
No 204
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.20 E-value=0.18 Score=43.76 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=28.4
Q ss_pred eCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhh
Q psy5031 37 LDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 37 ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
++++..+.+... +. +=.++.|+|+.++|||+|++.|++.+
T Consensus 10 ~~~~~~~~l~~~--v~--~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 10 FSPLQAAYLWLA--VE--ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCHHHHHHHHHH--Hh--CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456666544331 22 23578999999999999999998775
No 205
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=91.15 E-value=0.15 Score=45.34 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.6
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+++|+|+.++|||+||+.|.+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37889999999999999999875
No 206
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.14 E-value=0.18 Score=40.77 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=21.1
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
||.|+|+++||||++...|...+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999875
No 207
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.12 E-value=0.17 Score=45.59 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.0
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 30 QITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 378999999999999999998653
No 208
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=91.11 E-value=0.16 Score=46.36 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|++.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998764
No 209
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.09 E-value=0.16 Score=42.49 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.3
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+++|+|+.++|||+|++.|.+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 47889999999999999999765
No 210
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=91.08 E-value=0.19 Score=42.90 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.6
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|++..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68899999999999999998763
No 211
>PRK12736 elongation factor Tu; Reviewed
Probab=91.07 E-value=0.65 Score=45.34 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=23.9
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+|-.-|+|+|...+|||+|+++|+.+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~ 35 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKV 35 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhh
Confidence 567777999999999999999999865
No 212
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=91.07 E-value=0.51 Score=43.84 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.0
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
--|+|+|...+|||+|+|+|+..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~ 25 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLF 25 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 35889999999999999999854
No 213
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.04 E-value=0.18 Score=45.43 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-+++|+|+.++|||+|++.|.+.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 30 SVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 36899999999999999999763
No 214
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.02 E-value=0.17 Score=44.45 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.5
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+||+.|.+.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 367889999999999999998753
No 215
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=90.99 E-value=0.68 Score=39.13 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.4
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|.++|...+|||.|+|++++.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~ 23 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKD 23 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4779999999999999999754
No 216
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=90.99 E-value=0.17 Score=44.41 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|.+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 78899999999999999998653
No 217
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=90.96 E-value=0.17 Score=45.08 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.4
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhccC
Confidence 578899999999999999998764
No 218
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=90.95 E-value=0.18 Score=44.15 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|++.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998764
No 219
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=90.93 E-value=0.18 Score=44.31 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 378899999999999999998764
No 220
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=90.93 E-value=1 Score=40.93 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.2
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|+|...+|||+|+|+|+..
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~ 22 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYT 22 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 221
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.90 E-value=0.18 Score=45.37 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 30 TITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999998764
No 222
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.89 E-value=0.18 Score=44.74 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 378999999999999999998664
No 223
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=90.88 E-value=0.19 Score=40.48 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
++.|+|+.++|||+|+..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998875
No 224
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.87 E-value=0.18 Score=44.77 Aligned_cols=24 Identities=33% Similarity=0.575 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 478999999999999999998754
No 225
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.86 E-value=0.19 Score=45.24 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+||+.|++..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 31 KITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 368899999999999999998764
No 226
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.86 E-value=0.18 Score=43.03 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.9
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++|+|+.++|||+|++.|.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999765
No 227
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.84 E-value=0.18 Score=45.18 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998764
No 228
>PLN03110 Rab GTPase; Provisional
Probab=90.79 E-value=0.74 Score=40.75 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.1
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
...-|.|+|+..+|||+|+++|.+.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~ 35 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRN 35 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 4556889999999999999999653
No 229
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.78 E-value=0.2 Score=45.79 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=20.2
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++|+|+.++|||+||+.|.+.
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 49 VTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999874
No 230
>PLN02796 D-glycerate 3-kinase
Probab=90.77 E-value=0.2 Score=48.80 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.9
Q ss_pred eEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+--+|+|+|+.++|||+|++.|...+.
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 447999999999999999999988764
No 231
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=90.77 E-value=0.18 Score=45.19 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|.+.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998764
No 232
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.73 E-value=0.19 Score=43.07 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.5
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+++|+|+.++|||+|++.|++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37889999999999999999765
No 233
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.73 E-value=0.18 Score=45.44 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=20.2
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++|+|+.++|||+|++.|.+.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 34 VTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999865
No 234
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=90.72 E-value=0.18 Score=44.97 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+|++.|.+..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 378899999999999999998764
No 235
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.70 E-value=0.18 Score=45.26 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|++.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998764
No 236
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=90.68 E-value=0.21 Score=40.70 Aligned_cols=22 Identities=32% Similarity=0.167 Sum_probs=19.0
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|.|+|+.++|||+|+|++...
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4778899999999999999753
No 237
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=90.66 E-value=0.19 Score=43.94 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.9
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+|++.|++..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999998753
No 238
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.66 E-value=0.19 Score=45.28 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.4
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|++.+
T Consensus 31 e~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 31 GVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999998764
No 239
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.65 E-value=0.19 Score=44.10 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.+.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378899999999999999998753
No 240
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.65 E-value=0.2 Score=45.30 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+||+.|.+.+
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 34 SITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 388999999999999999998764
No 241
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=90.64 E-value=0.19 Score=40.79 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=18.8
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+..+|||+|+|+++..
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 788999999999999999754
No 242
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=90.64 E-value=0.19 Score=45.65 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 40 e~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 40 QVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 478999999999999999998764
No 243
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=90.61 E-value=1.2 Score=46.82 Aligned_cols=101 Identities=23% Similarity=0.274 Sum_probs=0.0
Q ss_pred EEEecccccChhHHHHHHHHhhhhcccccCCCCCCCCCCCCCCCCcccCCCCcccccceeeeeceEEeecCCcccchhhc
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFR 138 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~~~~~~r 138 (281)
|+|+|...+|||+|+|+|++.
T Consensus 453 I~ivG~~nvGKSSLin~l~~~----------------------------------------------------------- 473 (712)
T PRK09518 453 VALVGRPNVGKSSLLNQLTHE----------------------------------------------------------- 473 (712)
T ss_pred EEEECCCCCCHHHHHHHHhCc-----------------------------------------------------------
Q ss_pred cCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccCCCCCCcccceEeeecceeecCCCCCceEEEEEecCCCCC
Q psy5031 139 KGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFD 218 (281)
Q Consensus 139 ~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~~~~~~~TkGIWmWs~P~~~~~~~g~~v~VlLlDTEG~~d 218 (281)
...-.=...+++...-...|.+ +|.. +.|+||.|+..
T Consensus 474 --------------------------------~~~~v~~~~gtT~d~~~~~~~~---------~~~~--~~liDTaG~~~ 510 (712)
T PRK09518 474 --------------------------------ERAVVNDLAGTTRDPVDEIVEI---------DGED--WLFIDTAGIKR 510 (712)
T ss_pred --------------------------------cccccCCCCCCCcCcceeEEEE---------CCCE--EEEEECCCccc
Q ss_pred CCcCcccchhhHHHHHhh------hhhhhhccCCCCChhhhhHhHHHHH
Q psy5031 219 SESTVRDCATVFALSTML------SSIQIYNLSQNIQEDDLQHLQLFTE 261 (281)
Q Consensus 219 ~~~s~~~d~~IFaLs~LL------SS~~IYNs~~~Ide~~L~~L~l~t~ 261 (281)
...........-.+.++- .-.++|.....+.++++..+..+.+
T Consensus 511 ~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~ 559 (712)
T PRK09518 511 RQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVD 559 (712)
T ss_pred CcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH
No 244
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.61 E-value=0.2 Score=44.98 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.6
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|.+.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 245
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=90.61 E-value=0.25 Score=42.69 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=23.4
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+|+|+|+.++|||+|+++|.+.+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~ 27 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSA 27 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 37999999999999999999998754
No 246
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=90.58 E-value=0.2 Score=44.54 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.0
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+..
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 378999999999999999998753
No 247
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.56 E-value=0.22 Score=45.21 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|.+.+
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999998764
No 248
>PRK10908 cell division protein FtsE; Provisional
Probab=90.55 E-value=0.2 Score=44.30 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.8
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+|++.|.+.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468889999999999999998654
No 249
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.54 E-value=0.21 Score=45.02 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|.+.+
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 32 VTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999998764
No 250
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=90.54 E-value=0.82 Score=37.94 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=18.1
Q ss_pred EEEecccccChhHHHHHHHH
Q psy5031 59 VSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~ 78 (281)
|.|+|+.++|||.|+++++.
T Consensus 3 i~vvG~~~~GKTsli~~~~~ 22 (161)
T cd04117 3 LLLIGDSGVGKTCLLCRFTD 22 (161)
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 67999999999999999964
No 251
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=90.54 E-value=0.2 Score=44.28 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|++.+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378899999999999999998754
No 252
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=90.53 E-value=0.2 Score=45.07 Aligned_cols=24 Identities=38% Similarity=0.311 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 28 QVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 378899999999999999998764
No 253
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.52 E-value=0.19 Score=46.17 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.2
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
-+++|+|+.++|||+||+.|.+.+..
T Consensus 27 e~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 37889999999999999999887543
No 254
>PRK06547 hypothetical protein; Provisional
Probab=90.51 E-value=0.33 Score=42.25 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=23.7
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+.-+|.|.|+.+||||+|.+.|...+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456699999999999999999998764
No 255
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=90.50 E-value=0.2 Score=44.55 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|++..
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 578999999999999999998754
No 256
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=90.48 E-value=0.2 Score=44.45 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.5
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+|++.|.+.+
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 34 QVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred eEEEEECCCCCCHHHHHHHHhCcc
Confidence 578999999999999999998764
No 257
>COG3596 Predicted GTPase [General function prediction only]
Probab=90.46 E-value=0.44 Score=45.46 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=19.8
Q ss_pred CceEEEEEEecccccChhHHHHHHHH
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
..||- |=|+|..+.|||.|+|.|..
T Consensus 37 ~~pvn-vLi~G~TG~GKSSliNALF~ 61 (296)
T COG3596 37 KEPVN-VLLMGATGAGKSSLINALFQ 61 (296)
T ss_pred cCcee-EEEecCCCCcHHHHHHHHHh
Confidence 34554 34899999999999999973
No 258
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=90.45 E-value=0.21 Score=42.55 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=20.5
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.+++.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999998764
No 259
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=90.43 E-value=0.21 Score=44.91 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=20.2
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++|+|+.++|||+||+.|.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999874
No 260
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=90.41 E-value=0.23 Score=45.53 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=21.4
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+..
T Consensus 46 e~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 46 TVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999998764
No 261
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.40 E-value=0.19 Score=44.18 Aligned_cols=24 Identities=33% Similarity=0.213 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+..
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccC
Confidence 488999999999999999998754
No 262
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=90.39 E-value=0.42 Score=46.88 Aligned_cols=45 Identities=24% Similarity=0.223 Sum_probs=30.9
Q ss_pred CHHHHHHHHccc----CCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 38 DYEALERILLQD----HVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 38 n~eal~~il~~~----~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+++|++.+...- .-.+.+=.++.++||.++|||+|++.|.+.+..
T Consensus 56 ~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 56 MEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 566666654310 000223467999999999999999999988643
No 263
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=90.38 E-value=0.2 Score=44.74 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378899999999999999998764
No 264
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.37 E-value=0.21 Score=43.67 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|++.+
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999998764
No 265
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=90.35 E-value=0.21 Score=45.35 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 33 EVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378899999999999999998764
No 266
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=90.34 E-value=0.3 Score=44.84 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=26.4
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.++.+|+|+|+..||||++++.|...+.+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 56899999999999999999999988764
No 267
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=90.32 E-value=0.2 Score=45.97 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|.+.+
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998764
No 268
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.31 E-value=0.23 Score=44.70 Aligned_cols=24 Identities=29% Similarity=0.283 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 31 ELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 468999999999999999998764
No 269
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=90.29 E-value=0.2 Score=40.53 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.9
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.++|..++|||+|+|+|++.
T Consensus 5 i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 5 IAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred EEEEcCCCCCHHHHHHHHhCc
Confidence 789999999999999999754
No 270
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.26 E-value=0.21 Score=42.98 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.6
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998653
No 271
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.24 E-value=0.22 Score=45.29 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+..
T Consensus 39 e~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 39 SVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998753
No 272
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=90.23 E-value=0.21 Score=44.30 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=21.4
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+++|+|+.++|||+||+.|.+.+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4788899999999999999987643
No 273
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.22 E-value=0.21 Score=45.66 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 36 e~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998764
No 274
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=90.22 E-value=0.22 Score=44.58 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.4
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998764
No 275
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=90.22 E-value=0.23 Score=41.15 Aligned_cols=21 Identities=38% Similarity=0.238 Sum_probs=18.7
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.++|+.++|||.|+|+++..
T Consensus 4 v~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 4 VVVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999999754
No 276
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.21 E-value=0.22 Score=43.57 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|++.+
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998764
No 277
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.21 E-value=0.22 Score=44.72 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|.+.+
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 32 VNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999998764
No 278
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.16 E-value=0.21 Score=45.94 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 34 e~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 34 SYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998764
No 279
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.16 E-value=0.3 Score=38.43 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.5
Q ss_pred EEEecccccChhHHHHHHHHhhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
|-+.||.++|||+|+..+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 45899999999999999999863
No 280
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=90.15 E-value=0.22 Score=40.62 Aligned_cols=21 Identities=38% Similarity=0.227 Sum_probs=18.5
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.++|+.++|||.|+|++...
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 678899999999999999754
No 281
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.07 E-value=0.24 Score=42.88 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.2
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|+||.++|||+|++.|...+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 67889999999999999997653
No 282
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=90.07 E-value=0.23 Score=43.85 Aligned_cols=24 Identities=33% Similarity=0.355 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998764
No 283
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=90.06 E-value=0.24 Score=40.09 Aligned_cols=22 Identities=36% Similarity=0.161 Sum_probs=19.3
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|+++|+.++|||+|+|++...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3788999999999999999754
No 284
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.06 E-value=0.22 Score=46.13 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.8
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
-+++|+|+.++|||+||+.|++.+.
T Consensus 38 e~~~l~G~nGsGKSTLl~~l~Gl~~ 62 (289)
T PRK13645 38 KVTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3789999999999999999987643
No 285
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.05 E-value=0.26 Score=44.34 Aligned_cols=23 Identities=39% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 31 VTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 88999999999999999998764
No 286
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=90.03 E-value=0.23 Score=44.16 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=21.4
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
||+|+|..+||||+|++.|...+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999876
No 287
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.02 E-value=0.22 Score=46.49 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.6
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
||+|+|+.++|||+|++.|.+.+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC
Confidence 689999999999999999987754
No 288
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=90.01 E-value=0.23 Score=44.85 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|++.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998754
No 289
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.01 E-value=0.26 Score=40.35 Aligned_cols=21 Identities=33% Similarity=0.233 Sum_probs=19.1
Q ss_pred EEEEEecccccChhHHHHHHH
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLL 77 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll 77 (281)
.+++|+|+.++|||+|++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 467999999999999999986
No 290
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.00 E-value=0.24 Score=44.65 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=20.1
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++|+|+.++|||+||+.|.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 33 ITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7899999999999999999864
No 291
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=89.98 E-value=0.23 Score=45.61 Aligned_cols=23 Identities=39% Similarity=0.390 Sum_probs=21.0
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|.+.+
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998764
No 292
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=89.96 E-value=0.52 Score=41.55 Aligned_cols=37 Identities=32% Similarity=0.402 Sum_probs=27.0
Q ss_pred HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+|++.++.. +..+++ |.|+.+|||||+|..+.+.+..
T Consensus 8 ~a~~~~l~~----~~~~~~--l~G~aGtGKT~~l~~~~~~~~~ 44 (196)
T PF13604_consen 8 EAVRAILTS----GDRVSV--LQGPAGTGKTTLLKALAEALEA 44 (196)
T ss_dssp HHHHHHHHC----TCSEEE--EEESTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc----CCeEEE--EEECCCCCHHHHHHHHHHHHHh
Confidence 577777642 334544 5899999999999999887654
No 293
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=89.96 E-value=0.24 Score=42.51 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.4
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-+++|+|+.++|||+|++.|.+.
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37889999999999999999765
No 294
>PRK07261 topology modulation protein; Provisional
Probab=89.96 E-value=0.27 Score=42.39 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.6
Q ss_pred EEEecccccChhHHHHHHHHhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l 80 (281)
|.|+|+.++|||+|+..|.+.+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999997763
No 295
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=89.91 E-value=0.21 Score=45.60 Aligned_cols=24 Identities=38% Similarity=0.361 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|++..
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 38 KVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 378999999999999999998753
No 296
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=89.91 E-value=0.24 Score=44.10 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+||+.|++.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 378899999999999999998764
No 297
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=89.88 E-value=0.24 Score=44.28 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.4
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+|++.|++.+
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998764
No 298
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.88 E-value=0.24 Score=44.59 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.6
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|.+.+
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 32 ITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 67899999999999999998764
No 299
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.86 E-value=0.24 Score=45.45 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.4
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|++.+
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 36 EYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998764
No 300
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=89.86 E-value=0.23 Score=50.09 Aligned_cols=26 Identities=23% Similarity=0.499 Sum_probs=22.1
Q ss_pred eEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
-|. |+|+||-|||||++..+|.+-+.
T Consensus 17 dIY-iGVVGPVRTGKSTFIKRFMel~V 42 (492)
T PF09547_consen 17 DIY-IGVVGPVRTGKSTFIKRFMELLV 42 (492)
T ss_pred ceE-EEeecCcccCchhHHHHHHHHhc
Confidence 344 69999999999999999998753
No 301
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=89.86 E-value=0.3 Score=42.51 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.3
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
++.|+|+.++|||+|++.+.+.+.
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 688999999999999999988653
No 302
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=89.86 E-value=0.23 Score=44.74 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+|++.|.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 32 EIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCc
Confidence 478999999999999999998764
No 303
>PRK12735 elongation factor Tu; Reviewed
Probab=89.85 E-value=1 Score=43.95 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=24.3
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+|.--|+|+|...+|||+|+|+|+..
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~ 35 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKV 35 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHh
Confidence 578888999999999999999999864
No 304
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.84 E-value=0.24 Score=45.48 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+||+.|.+.+
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998764
No 305
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=89.84 E-value=0.3 Score=43.40 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.5
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.|+|+|+.++|||+|++++++.+.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 588999999999999999998753
No 306
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=89.83 E-value=0.24 Score=43.35 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.6
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+++|+|+.++|||+|++.|.+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999765
No 307
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=89.83 E-value=1.6 Score=45.25 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=20.8
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|-=|+|+|....|||+|+++|+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~ 26 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEY 26 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHH
Confidence 445789999999999999999865
No 308
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=89.82 E-value=0.24 Score=45.38 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+||+.|.+.+
T Consensus 40 e~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 40 QTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998764
No 309
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.79 E-value=0.25 Score=45.42 Aligned_cols=24 Identities=33% Similarity=0.278 Sum_probs=20.9
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+..
T Consensus 40 e~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 40 KVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 378899999999999999998753
No 310
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.78 E-value=0.25 Score=42.97 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.3
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-+++|+|+.++|||+|++.|...
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999753
No 311
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=89.77 E-value=0.24 Score=45.16 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|++.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 312
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=89.76 E-value=0.24 Score=46.78 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.9
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+++|+|+.++|||+|++.|.+.+.
T Consensus 34 e~v~iiG~nGsGKSTLl~~L~Gl~~ 58 (305)
T PRK13651 34 EFIAIIGQTGSGKTTFIEHLNALLL 58 (305)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3789999999999999999987654
No 313
>KOG1547|consensus
Probab=89.75 E-value=1.1 Score=42.59 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=16.3
Q ss_pred CCCceEEEEEecCCCCCCCc
Q psy5031 202 TGEKAAVILLDTQGTFDSES 221 (281)
Q Consensus 202 ~g~~v~VlLlDTEG~~d~~~ 221 (281)
+|=++.+-++||+|++|.=.
T Consensus 100 ~gVklkltviDTPGfGDqIn 119 (336)
T KOG1547|consen 100 KGVKLKLTVIDTPGFGDQIN 119 (336)
T ss_pred cceEEEEEEecCCCcccccC
Confidence 56678899999999998743
No 314
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=89.73 E-value=1.4 Score=39.16 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.5
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.||.++||.++||++.+=.|..++..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~ 27 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKL 27 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhh
Confidence 37899999999999999999887643
No 315
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.73 E-value=0.24 Score=45.16 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378899999999999999998764
No 316
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=89.72 E-value=0.25 Score=44.94 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+|++.|.+..
T Consensus 31 e~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 31 EMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999998754
No 317
>PRK00698 tmk thymidylate kinase; Validated
Probab=89.71 E-value=0.33 Score=41.71 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.9
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+|+|.|+-++|||++++.|..++..
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 37899999999999999999988644
No 318
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=89.70 E-value=0.25 Score=45.11 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.0
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
No 319
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=89.70 E-value=0.29 Score=47.63 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=23.5
Q ss_pred EEEEEEecccccChhHHHHHHHHhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
=.+|.|+||.+||||++|+.|++++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999999864
No 320
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=89.70 E-value=0.28 Score=40.26 Aligned_cols=21 Identities=29% Similarity=0.173 Sum_probs=18.7
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+.++|||.|+|+|...
T Consensus 3 i~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 668999999999999999754
No 321
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=89.69 E-value=0.25 Score=44.54 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.0
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 30 EVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378899999999999999998764
No 322
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=89.69 E-value=0.24 Score=44.80 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.6
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|.+.+
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999998753
No 323
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=89.68 E-value=0.24 Score=45.40 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|.+.+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998764
No 324
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=89.68 E-value=0.24 Score=45.19 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+||+.|++.+
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 38 ETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378899999999999999998764
No 325
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=89.67 E-value=0.26 Score=43.30 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=21.7
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+++|+|+.++|||+|++.|++.+.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4688999999999999999987643
No 326
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=89.64 E-value=0.23 Score=44.68 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.1
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+++|+|+.++|||+|++.|++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 34 EIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHcCC
Confidence 47889999999999999999764
No 327
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=89.63 E-value=0.26 Score=41.79 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=18.5
Q ss_pred EEEEecccccChhHHHHHHHH
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~ 78 (281)
-|.|+|+.++|||+|+|++.+
T Consensus 21 ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 21 KILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 348999999999999999964
No 328
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=89.62 E-value=0.25 Score=44.02 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=20.9
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378899999999999999998754
No 329
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=89.61 E-value=0.23 Score=44.46 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=20.4
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+++|+|+.++|||+|++.|.+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 37889999999999999999775
No 330
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=89.60 E-value=0.28 Score=43.37 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|++.+
T Consensus 41 e~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 378999999999999999998764
No 331
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.59 E-value=0.23 Score=46.15 Aligned_cols=29 Identities=28% Similarity=0.244 Sum_probs=25.6
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.|=-|++|+||.++|||+||..|..++..
T Consensus 25 ~pGev~ailGPNGAGKSTlLk~LsGel~p 53 (259)
T COG4559 25 RPGEVLAILGPNGAGKSTLLKALSGELSP 53 (259)
T ss_pred cCCcEEEEECCCCccHHHHHHHhhCccCC
Confidence 45678999999999999999999988764
No 332
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=89.58 E-value=0.29 Score=44.85 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+||+.|.+.+
T Consensus 47 e~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 47 KITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 378999999999999999998754
No 333
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=89.57 E-value=0.23 Score=44.25 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=20.6
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|.+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 78999999999999999997653
No 334
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.53 E-value=0.24 Score=45.38 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|.+.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 78999999999999999998754
No 335
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.52 E-value=0.29 Score=44.08 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|.+..
T Consensus 33 ~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 33 VTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 78899999999999999998763
No 336
>PRK06762 hypothetical protein; Provisional
Probab=89.52 E-value=0.35 Score=40.59 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=21.0
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|+|+.++|||++...|.+.+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67889999999999999998875
No 337
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=89.50 E-value=0.24 Score=44.86 Aligned_cols=23 Identities=35% Similarity=0.280 Sum_probs=19.9
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|-|+++|+.++|||+|+|+|.+.
T Consensus 1 ~~v~lvG~~~~GKStLl~~Ltg~ 23 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNT 23 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 35789999999999999999754
No 338
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=89.46 E-value=0.35 Score=40.81 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.4
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+|+|.|+-++|||++++.|...+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999988753
No 339
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=89.46 E-value=0.71 Score=39.04 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=32.1
Q ss_pred HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhhc
Q psy5031 40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFT 83 (281)
Q Consensus 40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~ 83 (281)
.|+...+..+ ..+|| =|+|.-|+.+|||||+...|++.++..
T Consensus 39 ~ai~~~l~~~-~p~Kp-LVlSfHG~tGtGKn~v~~liA~~ly~~ 80 (127)
T PF06309_consen 39 NAIKGHLANP-NPRKP-LVLSFHGWTGTGKNFVSRLIAEHLYKS 80 (127)
T ss_pred HHHHHHHcCC-CCCCC-EEEEeecCCCCcHHHHHHHHHHHHHhc
Confidence 4555555432 24667 689999999999999999999998753
No 340
>PLN02348 phosphoribulokinase
Probab=89.46 E-value=0.33 Score=48.15 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=25.0
Q ss_pred eEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
...||+|+|+.++|||+|+++|.+.+..
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4579999999999999999999998754
No 341
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=89.44 E-value=0.31 Score=43.38 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.1
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
-||+++||.++|||+|+.++...+..
T Consensus 29 eivtlMGPSGcGKSTLls~~~G~La~ 54 (213)
T COG4136 29 EIVTLMGPSGCGKSTLLSWMIGALAG 54 (213)
T ss_pred cEEEEECCCCccHHHHHHHHHhhccc
Confidence 48999999999999999999888643
No 342
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=89.44 E-value=0.3 Score=44.93 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.6
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 51 e~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 51 EVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 488999999999999999998864
No 343
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.42 E-value=0.27 Score=45.62 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.8
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+++|+|+.++|||+|++.|.+.+.
T Consensus 34 e~~~i~G~nGsGKSTLl~~L~Gl~~ 58 (286)
T PRK13646 34 KYYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999999999987653
No 344
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=89.41 E-value=0.26 Score=41.26 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.0
Q ss_pred EEEecccccChhHHHHHHHHhhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
|.++|+.++|||++++.|.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 45889999999999999998753
No 345
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=89.40 E-value=0.43 Score=40.84 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=18.6
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+..|.||.+||||+++-.++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 77789999999999888888776
No 346
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=89.40 E-value=0.3 Score=44.62 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.5
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+++|+|+.++|||+||+.|.+.
T Consensus 37 e~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 37 QITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47889999999999999999864
No 347
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=89.37 E-value=0.28 Score=43.15 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 28 QLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999998754
No 348
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=89.36 E-value=0.29 Score=41.84 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++|+|+.++|||+||+.|.+.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999999999765
No 349
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.34 E-value=0.29 Score=43.68 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=21.8
Q ss_pred EEEEEEecccccChhHHHHHHHHhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
=.+++|+|+.++|||+|++.|++..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999998764
No 350
>PRK07429 phosphoribulokinase; Provisional
Probab=89.34 E-value=0.34 Score=46.63 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=24.4
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
...-+|+|+|+.++|||+|++.|.+.+.
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~ 33 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLG 33 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhc
Confidence 3456999999999999999999998764
No 351
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=89.32 E-value=0.27 Score=43.86 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.0
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+..
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998754
No 352
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.32 E-value=0.31 Score=43.81 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.6
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+++|+|+.++|||+||+.|++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 30 SVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37889999999999999999875
No 353
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.32 E-value=0.31 Score=41.53 Aligned_cols=24 Identities=42% Similarity=0.558 Sum_probs=20.9
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.+.+.+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999999997653
No 354
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.30 E-value=0.28 Score=45.39 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=21.6
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 34 e~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 34 SWTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred CEEEEECCCCCcHHHHHHHHhccc
Confidence 478999999999999999998765
No 355
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=89.29 E-value=0.27 Score=40.06 Aligned_cols=21 Identities=24% Similarity=0.127 Sum_probs=18.7
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|+|+.++|||.|+|++.+.
T Consensus 2 i~iiG~~~~GKssli~~~~~~ 22 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLG 22 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 678999999999999999754
No 356
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=89.29 E-value=0.3 Score=40.18 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=19.3
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.|.++|...+|||.|+|+|.+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~ 23 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRA 23 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcC
Confidence 4788999999999999999754
No 357
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=89.28 E-value=0.28 Score=44.44 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+||+.|++.+
T Consensus 32 e~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 32 DVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999998764
No 358
>KOG2485|consensus
Probab=89.27 E-value=0.84 Score=44.27 Aligned_cols=25 Identities=32% Similarity=0.219 Sum_probs=19.3
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.-|=|+|....|||.|+|.+.+...
T Consensus 144 ~~vmVvGvPNVGKSsLINa~r~~~L 168 (335)
T KOG2485|consen 144 YNVMVVGVPNVGKSSLINALRNVHL 168 (335)
T ss_pred eeEEEEcCCCCChHHHHHHHHHHHh
Confidence 3455788888999999998876643
No 359
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.27 E-value=0.28 Score=45.21 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (274)
T PRK13644 29 EYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998754
No 360
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.26 E-value=0.28 Score=45.53 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.6
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
-+++|+|+.++|||+||+.|++.+.
T Consensus 34 e~~~iiG~NGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13641 34 SFVALVGHTGSGKSTLMQHFNALLK 58 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999987643
No 361
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=89.26 E-value=0.33 Score=48.87 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=22.6
Q ss_pred EEEEEEecccccChhHHHHHHHHhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
--||+|+|+.+||||+|++.|...+.
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~~lL~ 237 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALDYLFR 237 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 36999999999999999999976653
No 362
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=89.25 E-value=0.29 Score=42.62 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.5
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.+++..
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 78899999999999999998753
No 363
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=89.25 E-value=0.28 Score=44.01 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.0
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 478899999999999999998754
No 364
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=89.20 E-value=0.29 Score=43.57 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+..
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999998764
No 365
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.20 E-value=0.29 Score=43.24 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|.+..
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998753
No 366
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=89.20 E-value=0.35 Score=43.63 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=21.5
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+|+|.|+.++|||++++.|...+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999987543
No 367
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=89.19 E-value=0.28 Score=40.44 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.1
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+.++|..+.|||+|+|.|++.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~ 106 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK 106 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5678899999999999999754
No 368
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=89.19 E-value=0.28 Score=45.88 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.8
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+++++|+.++|||+|++.|++.+.
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3789999999999999999987653
No 369
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.01 E-value=0.29 Score=45.52 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|.+-+
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~ 56 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 78999999999999999998754
No 370
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.00 E-value=0.31 Score=44.97 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.5
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|.+.+
T Consensus 48 ~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 48 IIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998653
No 371
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.99 E-value=0.34 Score=44.05 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+|++.|++.+
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 34 KVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 378899999999999999998764
No 372
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=88.96 E-value=0.28 Score=49.00 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=20.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-.|+|+|+.++|||+|+|.|++..
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 356788999999999999998764
No 373
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=88.95 E-value=0.28 Score=44.84 Aligned_cols=24 Identities=38% Similarity=0.386 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 34 HFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 378999999999999999997653
No 374
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=88.93 E-value=0.29 Score=45.31 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=20.9
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|++.+
T Consensus 29 ~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 29 VTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998754
No 375
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=88.91 E-value=0.36 Score=42.90 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.7
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+|+|.|..+||||++++.|.+.
T Consensus 6 ~~igitG~igsGKSt~~~~l~~~ 28 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAEM 28 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
Confidence 47899999999999999999763
No 376
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.89 E-value=0.31 Score=45.14 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.3
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+|+.++|||+|++.|.+.+.
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~~ 58 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 689999999999999999987643
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=88.88 E-value=0.34 Score=43.31 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=20.3
Q ss_pred EEEEEecccccChhHHHHHHHH
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
.+++|+||.++|||+|++.+..
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~ 47 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLF 47 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999973
No 378
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=88.87 E-value=1.2 Score=43.92 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=20.4
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+.+.. |=++|+.++|||+++|-|+..
T Consensus 21 Gi~f~-im~~G~sG~GKttfiNtL~~~ 46 (373)
T COG5019 21 GIDFT-IMVVGESGLGKTTFINTLFGT 46 (373)
T ss_pred CCceE-EEEecCCCCchhHHHHhhhHh
Confidence 44444 457899999999999999765
No 379
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=88.85 E-value=0.2 Score=39.12 Aligned_cols=19 Identities=42% Similarity=0.450 Sum_probs=17.0
Q ss_pred EecccccChhHHHHHHHHh
Q psy5031 61 VAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 61 I~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|+.++|||+|+|.|.+.
T Consensus 1 i~G~~gsGKstl~~~l~~~ 19 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQ 19 (163)
T ss_pred CcCCCCCCHHHHHHHHhCc
Confidence 5899999999999999765
No 380
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=88.84 E-value=0.62 Score=45.04 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=25.5
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+-.+|+|.|+.++|||+|++.|...+..
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45679999999999999999999988754
No 381
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.82 E-value=0.32 Score=44.30 Aligned_cols=24 Identities=33% Similarity=0.337 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+..
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~Gl~ 57 (261)
T PRK14258 34 KVTAIIGPSGCGKSTFLKCLNRMN 57 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHhccc
Confidence 378899999999999999998764
No 382
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.81 E-value=0.32 Score=44.89 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|++.+
T Consensus 31 e~~~i~G~NGsGKSTLl~~l~Gl~ 54 (277)
T PRK13652 31 SRIAVIGPNGAGKSTLFRHFNGIL 54 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998764
No 383
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.80 E-value=0.32 Score=44.96 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.7
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
-+++|+|+.++|||+|++.|++.+.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDGLLE 58 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999987653
No 384
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.79 E-value=0.33 Score=44.23 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=20.9
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 43 e~~~i~G~nGsGKSTLl~~l~Gl~ 66 (265)
T PRK14252 43 QVTALIGPSGCGKSTFLRCFNRMH 66 (265)
T ss_pred cEEEEECCCCCCHHHHHHHHhccc
Confidence 378999999999999999998653
No 385
>PRK04182 cytidylate kinase; Provisional
Probab=88.74 E-value=0.41 Score=40.07 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=21.0
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|+|..+||||++...|...+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998764
No 386
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=88.68 E-value=0.32 Score=43.41 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 29 ELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998764
No 387
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=88.65 E-value=0.29 Score=40.55 Aligned_cols=21 Identities=29% Similarity=0.194 Sum_probs=18.6
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+..+|||.|+|+++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~ 21 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTN 21 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhC
Confidence 578999999999999999754
No 388
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=88.64 E-value=0.35 Score=40.48 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=18.3
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+++|+..+|||+|+|+++..
T Consensus 4 v~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 4 IAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 568899999999999999753
No 389
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=88.64 E-value=0.32 Score=45.46 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.4
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++++|+.++|||+||+.|++.+
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998764
No 390
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=88.62 E-value=0.35 Score=38.42 Aligned_cols=24 Identities=25% Similarity=0.128 Sum_probs=21.1
Q ss_pred EEEecccccChhHHHHHHHHhhhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
|-|.|+.++|||+|++.|++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999988764
No 391
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=88.61 E-value=0.38 Score=39.29 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=18.7
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+.++|||.|++++...
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 678999999999999999754
No 392
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=88.60 E-value=0.41 Score=41.83 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=25.3
Q ss_pred EEEEEEecccccChhHHHHHHHHhhhhc
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMNFT 83 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~~ 83 (281)
..|++|+|...|||++|+..+.+.+...
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 4699999999999999999999988764
No 393
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.60 E-value=0.34 Score=44.80 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|.+.+
T Consensus 48 e~~~I~G~nGsGKSTLl~~l~Gl~ 71 (276)
T PRK14271 48 AVTSLMGPTGSGKTTFLRTLNRMN 71 (276)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999998754
No 394
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=88.58 E-value=0.35 Score=42.74 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 32 ~~~~I~G~nGsGKStLl~~l~G~~ 55 (220)
T TIGR02982 32 EIVILTGPSGSGKTTLLTLIGGLR 55 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 588999999999999999998754
No 395
>PRK08118 topology modulation protein; Reviewed
Probab=88.55 E-value=0.4 Score=41.28 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=20.9
Q ss_pred EEEecccccChhHHHHHHHHhhhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
|.|+|+.++|||+|+..|.+.+..
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 788999999999999999887543
No 396
>PF05729 NACHT: NACHT domain
Probab=88.53 E-value=0.46 Score=38.63 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=22.0
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
++-|.|+.++|||.+|..+...+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh
Confidence 6789999999999999999987654
No 397
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.53 E-value=0.35 Score=44.96 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.6
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+++|+|+.++|||+||+.|.+.
T Consensus 66 e~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 66 YVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999874
No 398
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.51 E-value=0.33 Score=46.16 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 53 e~~~I~G~nGsGKSTLl~~L~Gl~ 76 (320)
T PRK13631 53 KIYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998764
No 399
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=88.50 E-value=0.37 Score=39.93 Aligned_cols=21 Identities=29% Similarity=0.165 Sum_probs=18.5
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+.++|||.|+|++...
T Consensus 3 i~i~G~~~~GKTsl~~~~~~~ 23 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYAND 23 (174)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999999754
No 400
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=88.49 E-value=0.32 Score=39.56 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=17.9
Q ss_pred EEEecccccChhHHHHHHHH
Q psy5031 59 VSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~ 78 (281)
|.++|+.++|||.|+|+|..
T Consensus 2 i~~vG~~~~GKTsl~~~l~~ 21 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKP 21 (162)
T ss_pred EEEECCCCCCHHHHHHHHcc
Confidence 57889999999999999964
No 401
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=88.47 E-value=0.34 Score=42.25 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=20.9
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+|++.|++.+
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378899999999999999998653
No 402
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.47 E-value=0.35 Score=44.97 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+||+.|++.+
T Consensus 66 e~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 66 QVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999998764
No 403
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=88.44 E-value=0.33 Score=46.51 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+|++.|++.+
T Consensus 32 ei~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 478899999999999999998764
No 404
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.39 E-value=0.34 Score=44.64 Aligned_cols=25 Identities=28% Similarity=0.151 Sum_probs=21.7
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
-+++|+|+.++|||+|++.|.+.+.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4788999999999999999987643
No 405
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=88.36 E-value=0.35 Score=43.81 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+|++.|.+.+
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 30 RVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378899999999999999998764
No 406
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=88.35 E-value=0.31 Score=44.15 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.7
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+++|+|+.++|||+|++.|.+.
T Consensus 23 ei~~l~G~nGsGKSTLl~~l~Gl 45 (248)
T PRK03695 23 EILHLVGPNGAGKSTLLARMAGL 45 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 48999999999999999999765
No 407
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=88.34 E-value=0.33 Score=43.94 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=20.9
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+|++.|.+.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~ 51 (256)
T TIGR03873 28 SLTGLLGPNGSGKSTLLRLLAGAL 51 (256)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC
Confidence 378899999999999999998754
No 408
>PRK04213 GTP-binding protein; Provisional
Probab=88.34 E-value=0.33 Score=41.70 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=20.0
Q ss_pred EEEEEEecccccChhHHHHHHHH
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
..-|.++|...+|||+|+|+|..
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~ 31 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTG 31 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44688999999999999999964
No 409
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.33 E-value=0.35 Score=44.96 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.4
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+|+.++|||+|++.|++.+.
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 789999999999999999987653
No 410
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=88.28 E-value=0.39 Score=44.08 Aligned_cols=24 Identities=33% Similarity=0.281 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 52 e~~~I~G~nGsGKSTLl~~laGl~ 75 (272)
T PRK14236 52 RVTAFIGPSGCGKSTLLRCFNRMN 75 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 478999999999999999998764
No 411
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.22 E-value=0.36 Score=44.10 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|.+..
T Consensus 38 ~~~i~G~nGsGKSTLl~~iaG~~ 60 (257)
T PRK14246 38 IFGIMGPSGSGKSTLLKVLNRLI 60 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998764
No 412
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.21 E-value=0.37 Score=44.45 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.1
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+|+.++|||+|++.|++.+.
T Consensus 35 ~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (277)
T PRK13642 35 WVSIIGQNGSGKSTTARLIDGLFE 58 (277)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 689999999999999999987643
No 413
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=88.20 E-value=0.36 Score=42.48 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=19.2
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|+|...+|||+|+|+|+..
T Consensus 2 i~iiG~~~~GKStL~~~Ll~~ 22 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYD 22 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 414
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=88.13 E-value=0.4 Score=43.62 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.9
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|++..
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl~ 71 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHccc
Confidence 78999999999999999998764
No 415
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=88.08 E-value=0.44 Score=42.82 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.++.|.|+.++|||+|++.+++.+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3577899999999999999987753
No 416
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=88.06 E-value=0.38 Score=38.47 Aligned_cols=22 Identities=36% Similarity=0.335 Sum_probs=19.2
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|+++|+..+|||+|+|++...
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3789999999999999999754
No 417
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=87.95 E-value=0.42 Score=40.39 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=18.9
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+..+|||.|+|++++.
T Consensus 3 i~vvG~~~vGKTsli~~l~~~ 23 (187)
T cd04132 3 IVVVGDGGCGKTCLLIVYSQG 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999999754
No 418
>KOG0410|consensus
Probab=87.95 E-value=0.32 Score=47.61 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=24.6
Q ss_pred CCceEEEEEEecccccChhHHHHHHHH
Q psy5031 52 KDKHVVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
.+.+..||||+|...+|||+|+|+|-.
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~ 200 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTK 200 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHh
Confidence 367899999999999999999999974
No 419
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=87.86 E-value=0.41 Score=39.72 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=18.5
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+..+|||.|+++++..
T Consensus 4 i~iiG~~~~GKTsl~~~~~~~ 24 (175)
T cd01870 4 LVIVGDGACGKTCLLIVFSKD 24 (175)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 678899999999999999754
No 420
>PRK04040 adenylate kinase; Provisional
Probab=87.85 E-value=0.49 Score=41.69 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=21.3
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|+|..++|||++++.|.+.+
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHh
Confidence 78899999999999999998876
No 421
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=87.84 E-value=0.44 Score=40.10 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=21.6
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
||.|+|..+||||+|+..|.+.+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998864
No 422
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=87.84 E-value=0.42 Score=40.57 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.9
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
||-|+|+.+||||++...|...+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998864
No 423
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=87.84 E-value=0.44 Score=39.15 Aligned_cols=22 Identities=27% Similarity=0.143 Sum_probs=18.9
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|.++|...+|||+|+|+++..
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~ 24 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQG 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4678899999999999999743
No 424
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=87.82 E-value=0.42 Score=40.68 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.8
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+.++|||.|+|+++..
T Consensus 3 i~v~G~~~vGKSsli~~~~~~ 23 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFTED 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 788999999999999999754
No 425
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=87.80 E-value=0.4 Score=48.00 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+||+.|++.+
T Consensus 27 e~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 27 EVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 368899999999999999999864
No 426
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.73 E-value=0.43 Score=43.69 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+|++.|.+.+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 35 EITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred CEEEEECCCCCCHHHHHHHHHccc
Confidence 478899999999999999998764
No 427
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=87.73 E-value=0.37 Score=48.70 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=21.2
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.|+|+|+.++|||+|+|.|+++...
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 4558899999999999999998543
No 428
>PRK05541 adenylylsulfate kinase; Provisional
Probab=87.73 E-value=0.53 Score=40.01 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=22.5
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+|.++|+.++|||++++.|.+.+.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3888999999999999999998875
No 429
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=87.73 E-value=0.42 Score=41.07 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=19.1
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|+|...+|||+|+|+|.+.
T Consensus 3 i~i~G~~~~GKstLi~~l~~~ 23 (192)
T cd01889 3 VGVLGHVDSGKTSLAKALSEI 23 (192)
T ss_pred EEEEecCCCCHHHHHHHHHhc
Confidence 789999999999999999863
No 430
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.73 E-value=0.4 Score=44.64 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=21.8
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
-+++|+|+.++|||+|++.|++.+.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (290)
T PRK13634 34 SYVAIIGHTGSGKSTLLQHLNGLLQ 58 (290)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3789999999999999999987643
No 431
>PRK10218 GTP-binding protein; Provisional
Probab=87.67 E-value=2.5 Score=44.05 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.9
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|--|+|+|...+|||+|+++|+..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~ 28 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQ 28 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHh
Confidence 556889999999999999999864
No 432
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.66 E-value=0.41 Score=45.78 Aligned_cols=24 Identities=29% Similarity=0.212 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+||+.|++..
T Consensus 109 e~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 109 KVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 468899999999999999998764
No 433
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=87.65 E-value=0.38 Score=47.73 Aligned_cols=25 Identities=28% Similarity=0.145 Sum_probs=21.7
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+++|+|+.++|||+||+.|.+.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G~~~ 54 (490)
T PRK10938 30 DSWAFVGANGSGKSALARALAGELP 54 (490)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 4689999999999999999987653
No 434
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=87.65 E-value=0.38 Score=41.58 Aligned_cols=25 Identities=28% Similarity=0.190 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.-|.|+|+.++|||+|+|+|.+...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~ 30 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF 30 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC
Confidence 5677889999999999999987643
No 435
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.63 E-value=0.42 Score=44.85 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|++.+
T Consensus 73 ~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 73 VTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 78899999999999999998764
No 436
>PRK05433 GTP-binding protein LepA; Provisional
Probab=87.57 E-value=1.9 Score=44.71 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=19.9
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|-=|+|+|....|||+|+++|+..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~ 30 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIEL 30 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 334678899999999999999865
No 437
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=87.56 E-value=0.45 Score=44.35 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.9
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|.+.+
T Consensus 32 ~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 32 RVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred EEEEECCCCCCHHHHHHHHhhhc
Confidence 68899999999999999998875
No 438
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=87.52 E-value=0.45 Score=40.72 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=18.5
Q ss_pred EEEEecccccChhHHHHHHHH
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~ 78 (281)
-|+|+|+.++|||+|+|++..
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~ 23 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTL 23 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 468899999999999999974
No 439
>PLN03108 Rab family protein; Provisional
Probab=87.52 E-value=0.45 Score=41.84 Aligned_cols=23 Identities=26% Similarity=0.148 Sum_probs=19.7
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.=|.|+|+.++|||+|+|+|+..
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~ 29 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 44678899999999999999754
No 440
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=87.50 E-value=0.43 Score=45.44 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.9
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|++.+
T Consensus 35 ~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 35 IRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 68999999999999999998764
No 441
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=87.46 E-value=0.54 Score=42.84 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.6
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
..|-|+|+.+||||++|+.+++++..
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred eEEEEECCCccccchHHHHHhhhccc
Confidence 56778999999999999999998654
No 442
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=87.44 E-value=0.42 Score=45.54 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.5
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+|++.|++.+
T Consensus 34 e~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 34 EVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 378999999999999999998865
No 443
>PRK00049 elongation factor Tu; Reviewed
Probab=87.43 E-value=1.8 Score=42.37 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.9
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+|..-|+|+|...+|||+|+++|+..
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~ 35 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKV 35 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHh
Confidence 467778999999999999999999864
No 444
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=87.41 E-value=0.42 Score=44.15 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.5
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|++.+
T Consensus 52 ~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68899999999999999998754
No 445
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=87.40 E-value=0.61 Score=39.32 Aligned_cols=26 Identities=38% Similarity=0.407 Sum_probs=22.8
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++.-|.++|..++|||.|+++++..
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~ 27 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGR 27 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCC
Confidence 46888999999999999999999753
No 446
>PLN03127 Elongation factor Tu; Provisional
Probab=87.40 E-value=2.7 Score=42.04 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=25.2
Q ss_pred CCceEEEEEEecccccChhHHHHHHHHhh
Q psy5031 52 KDKHVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
..+|.--|+|+|-.-+|||+|+++|..+.
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~ 85 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVL 85 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHH
Confidence 36778889999999999999999997653
No 447
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=87.40 E-value=0.44 Score=44.67 Aligned_cols=44 Identities=27% Similarity=0.342 Sum_probs=30.2
Q ss_pred eEEeCH-HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 34 KFILDY-EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 34 ~l~ln~-eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+..+. .||+.|-.. +.. . .+++|+||.++|||+|+..++.-+.
T Consensus 11 ~v~y~~~~vl~~i~l~--v~~-G-~~~~iiGPNGaGKSTLlK~iLGll~ 55 (254)
T COG1121 11 TVSYGNRPVLEDISLS--VEK-G-EITALIGPNGAGKSTLLKAILGLLK 55 (254)
T ss_pred EEEECCEeeeeccEEE--EcC-C-cEEEEECCCCCCHHHHHHHHhCCCc
Confidence 444442 366654331 212 2 6899999999999999999998654
No 448
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=87.38 E-value=0.47 Score=40.82 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|+|.|.-++|||++++.|.+++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998874
No 449
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=87.32 E-value=0.46 Score=42.59 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+|++.|.+.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998764
No 450
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=87.19 E-value=0.45 Score=44.53 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|++.+
T Consensus 64 e~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 64 EMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998753
No 451
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=87.19 E-value=0.47 Score=44.06 Aligned_cols=45 Identities=29% Similarity=0.232 Sum_probs=30.8
Q ss_pred eEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 34 KFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 34 ~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
++-+.++-++.+.. ....+=.+|-|+|+.+||||++|+.+++++.
T Consensus 61 ~lg~~~~~~~~l~~---~~~~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 61 KLGLKPENLEIFRK---LLEKPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred HcCCCHHHHHHHHH---HHhcCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 34455555554432 1233446789999999999999999988753
No 452
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=87.18 E-value=0.43 Score=46.25 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+||+.|++.+
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999998764
No 453
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=87.18 E-value=0.39 Score=40.51 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=18.2
Q ss_pred EEEecccccChhHHHHHHHH
Q psy5031 59 VSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~ 78 (281)
|.++|..++|||+|+|.|.+
T Consensus 4 i~~iG~~~~GKstl~~~l~~ 23 (158)
T PRK15467 4 IAFVGAVGAGKTTLFNALQG 23 (158)
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 78899999999999999864
No 454
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=87.14 E-value=0.5 Score=40.67 Aligned_cols=22 Identities=45% Similarity=0.495 Sum_probs=19.4
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+.++|...+|||+|+|.|+..
T Consensus 129 ~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 129 DVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred cEEEEcCCCCCHHHHHHHHHHh
Confidence 4678899999999999999875
No 455
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=87.11 E-value=0.45 Score=43.93 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=21.3
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+|+.++|||+|++.|.+.+.
T Consensus 38 ~~~l~G~nGsGKSTLl~~l~Gl~~ 61 (280)
T PRK13633 38 FLVILGRNGSGKSTIAKHMNALLI 61 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999987643
No 456
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=87.06 E-value=0.52 Score=39.19 Aligned_cols=21 Identities=33% Similarity=0.259 Sum_probs=18.8
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.++|+.++|||.|+|++.+.
T Consensus 4 i~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 688999999999999999754
No 457
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=87.04 E-value=0.48 Score=42.24 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=19.0
Q ss_pred EEEEecccccChhHHHHHHH
Q psy5031 58 VVSVAGAFRKGKSFLLDFLL 77 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll 77 (281)
+++|+||.++|||+||..|.
T Consensus 25 ~~~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 25 HNVVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88899999999999999997
No 458
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.01 E-value=0.46 Score=43.75 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.9
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|.+.+
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (275)
T PRK13639 30 MVALLGPNGAGKSTLFLHFNGIL 52 (275)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 88999999999999999998754
No 459
>KOG2655|consensus
Probab=86.99 E-value=1.6 Score=43.03 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=17.8
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+=|+|+.++|||+|+|-|...
T Consensus 24 lmvvG~sGlGKsTfiNsLf~~ 44 (366)
T KOG2655|consen 24 LMVVGESGLGKSTFINSLFLT 44 (366)
T ss_pred EEEecCCCccHHHHHHHHHhh
Confidence 457899999999999998644
No 460
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=86.86 E-value=0.52 Score=41.78 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=20.7
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-++.|.||.++|||+||+.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 58889999999999999999754
No 461
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=86.85 E-value=0.46 Score=43.26 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=24.8
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.|=-|++|+|..+||||+||+.|...+..
T Consensus 30 ~PGeVLgiVGESGSGKtTLL~~is~rl~p 58 (258)
T COG4107 30 YPGEVLGIVGESGSGKTTLLKCISGRLTP 58 (258)
T ss_pred cCCcEEEEEecCCCcHHhHHHHHhcccCC
Confidence 35568999999999999999999877644
No 462
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=86.85 E-value=2.2 Score=36.66 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=18.3
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.++|..+.|||.|+++++..
T Consensus 3 i~vlG~~~vGKTsLi~~~~~~ 23 (182)
T cd04128 3 IGLLGDAQIGKTSLMVKYVEG 23 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678899999999999999754
No 463
>PRK14737 gmk guanylate kinase; Provisional
Probab=86.84 E-value=0.94 Score=39.82 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.8
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+|-|+||.++|||+|+++|+..
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5778999999999999999865
No 464
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=86.80 E-value=0.5 Score=45.50 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.3
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
-|-|+|+.+||||+|||.|++++.
T Consensus 162 nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhhCC
Confidence 477899999999999999998854
No 465
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=86.79 E-value=0.48 Score=45.53 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=21.7
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
-+++|+|+.++|||+||+.|++.+.
T Consensus 24 ei~~l~G~nGsGKSTLl~~iaGl~~ 48 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGLTR 48 (354)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3789999999999999999987643
No 466
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.75 E-value=0.53 Score=39.26 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.9
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+|++.|.+.+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999997653
No 467
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=86.74 E-value=0.5 Score=43.78 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.4
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+|+.++|||+|++.|.+.+.
T Consensus 34 ~~~i~G~nGaGKSTLl~~i~Gl~~ 57 (283)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGILK 57 (283)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 789999999999999999987643
No 468
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=86.74 E-value=0.44 Score=43.98 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.2
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.|+|+|++.+|||+|||.+++.
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCC
Confidence 5889999999999999999875
No 469
>PRK14738 gmk guanylate kinase; Provisional
Probab=86.73 E-value=0.87 Score=40.33 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=19.4
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+|.|+||.++|||+|+++|...
T Consensus 14 ~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 14 LLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred eEEEEECcCCCCHHHHHHHHHhc
Confidence 45677999999999999999643
No 470
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=86.72 E-value=0.68 Score=39.71 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.4
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+|+|.|+-++|||++++.|...+..
T Consensus 5 ~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 5 FIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988754
No 471
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=86.69 E-value=0.54 Score=43.01 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=19.2
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|+|..++|||+|+|+|+..
T Consensus 2 i~ivG~~gsGKStL~~~Ll~~ 22 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYA 22 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999865
No 472
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=86.67 E-value=2.3 Score=37.83 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=21.0
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+-.-|.|+|...+|||+|+++++..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~ 36 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTG 36 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhC
Confidence 44556789999999999999998643
No 473
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=86.61 E-value=0.51 Score=44.17 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.9
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+++|+|+.++|||+|++.|+.....
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 57999999999999999999987544
No 474
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=86.60 E-value=0.5 Score=45.67 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.5
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+|+.++|||+||+.|++.+
T Consensus 29 e~~~llGpsGsGKSTLLr~IaGl~ 52 (353)
T PRK10851 29 QMVALLGPSGSGKTTLLRIIAGLE 52 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998764
No 475
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=86.59 E-value=0.51 Score=44.17 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++++|+.++|||+||+.|++-+
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998754
No 476
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=86.58 E-value=0.47 Score=46.21 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.2
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+|+.++|||+||+.|++...
T Consensus 21 i~~l~G~sGsGKSTLLr~L~Gl~~ 44 (363)
T TIGR01186 21 IFVIMGLSGSGKSTTVRMLNRLIE 44 (363)
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 678999999999999999987653
No 477
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=86.57 E-value=1 Score=48.21 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=18.8
Q ss_pred EEEEecccccChhHHHHHHHH
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~ 78 (281)
.|+++|...+|||+|.|+|.+
T Consensus 5 ~IaLvG~pNvGKSTLfN~Ltg 25 (772)
T PRK09554 5 TIGLIGNPNSGKTTLFNQLTG 25 (772)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999999953
No 478
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=86.46 E-value=0.54 Score=41.61 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.4
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++|+|+.++|||+||+.|..-
T Consensus 30 ~~~i~G~NGsGKSTll~~i~~~ 51 (213)
T cd03279 30 LFLICGPTGAGKSTILDAITYA 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHheee
Confidence 7889999999999999998643
No 479
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=86.45 E-value=0.47 Score=47.37 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.8
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
-+++|+|+.++|||+||+.|.+.+.
T Consensus 31 e~~~l~G~NGsGKSTLl~~l~G~~~ 55 (501)
T PRK10762 31 RVMALVGENGAGKSTMMKVLTGIYT 55 (501)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999987653
No 480
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=86.45 E-value=0.34 Score=39.80 Aligned_cols=19 Identities=37% Similarity=0.363 Sum_probs=16.9
Q ss_pred EecccccChhHHHHHHHHh
Q psy5031 61 VAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 61 I~G~~RtGKSfLLN~Ll~~ 79 (281)
++|+.++|||+|+|+|...
T Consensus 1 iiG~~~~GKStll~~l~~~ 19 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNA 19 (176)
T ss_pred CCCCCCCcHHHHHHHHhcC
Confidence 5799999999999999754
No 481
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=86.44 E-value=0.44 Score=48.01 Aligned_cols=24 Identities=38% Similarity=0.318 Sum_probs=20.6
Q ss_pred EEEecccccChhHHHHHHHHhhhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
|+|+|+...|||.|||.|+++-.+
T Consensus 220 vvIiG~PNvGKSSLLNaL~~~d~A 243 (454)
T COG0486 220 VVIIGRPNVGKSSLLNALLGRDRA 243 (454)
T ss_pred EEEECCCCCcHHHHHHHHhcCCce
Confidence 468899999999999999987443
No 482
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=86.43 E-value=0.48 Score=47.36 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+|++.|.+.+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (506)
T PRK13549 32 EIVSLCGENGAGKSTLMKVLSGVY 55 (506)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998764
No 483
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.40 E-value=0.49 Score=44.19 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=21.4
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-|-+|+||.+||||+|.+.|....
T Consensus 31 EvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 31 EVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999998764
No 484
>PRK00889 adenylylsulfate kinase; Provisional
Probab=86.37 E-value=0.75 Score=39.05 Aligned_cols=28 Identities=21% Similarity=0.134 Sum_probs=24.0
Q ss_pred eEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+-.+|.++|+.++|||+++..|.+.+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3458999999999999999999988743
No 485
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=86.28 E-value=0.51 Score=47.45 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.3
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+|+.++|||+||+.|++.+.
T Consensus 37 ~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 37 TLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 688999999999999999987653
No 486
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=86.25 E-value=0.5 Score=47.91 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=20.6
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
..++|+|+.++|||+|++.|++..
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 456788999999999999998864
No 487
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=86.25 E-value=0.8 Score=40.01 Aligned_cols=43 Identities=21% Similarity=0.078 Sum_probs=29.9
Q ss_pred eCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 37 LDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 37 ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
-|..+++.+..- .....-..|-++|+.+||||+|+..+.++..
T Consensus 21 ~~~~~~~~l~~~--~~~~~~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 21 GNAELLAALRQL--AAGKGDRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CcHHHHHHHHHH--HhcCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 355677665442 1123345677899999999999999988754
No 488
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=86.23 E-value=0.53 Score=45.27 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.9
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|++.+
T Consensus 26 ~~~l~G~nGsGKSTLl~~iaGl~ 48 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINAISGLT 48 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998764
No 489
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=86.22 E-value=0.68 Score=40.91 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=20.3
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+|+|+|+.+||||++.++|...
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~ 24 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQ 24 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5999999999999999999875
No 490
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=86.13 E-value=0.55 Score=39.33 Aligned_cols=20 Identities=30% Similarity=0.205 Sum_probs=17.8
Q ss_pred EEEecccccChhHHHHHHHH
Q psy5031 59 VSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~ 78 (281)
|.++|+.++|||.|+|+|..
T Consensus 2 vvlvG~~~~GKTsl~~~l~~ 21 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQ 21 (169)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 56899999999999999964
No 491
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=86.12 E-value=0.63 Score=38.66 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=18.5
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|...+|||.|+|++...
T Consensus 3 v~ivG~~~vGKTsl~~~l~~~ 23 (166)
T cd01893 3 IVLIGDEGVGKSSLIMSLVSE 23 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678899999999999999764
No 492
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=86.11 E-value=0.56 Score=40.42 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEEecccccChhHHHHHHHH
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~ 78 (281)
+|+|.|..++|||++++.|..
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 493
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=86.06 E-value=0.72 Score=40.13 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=25.5
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+|++++=.+||.++||++|+..|.+++.
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5889999999999999999999999987
No 494
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=86.05 E-value=0.53 Score=47.25 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.7
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+++|+|+.++|||+||+.|.+.+.
T Consensus 38 e~~~liG~NGsGKSTLl~~l~Gl~~ 62 (510)
T PRK15439 38 EVHALLGGNGAGKSTLMKIIAGIVP 62 (510)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999999999999999987643
No 495
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=86.02 E-value=0.5 Score=48.83 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.1
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
-+++|+|+.++|||+||+.|++.+.
T Consensus 43 e~~~lvG~nGsGKSTLl~~l~Gll~ 67 (623)
T PRK10261 43 ETLAIVGESGSGKSVTALALMRLLE 67 (623)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 4789999999999999999998754
No 496
>PRK08356 hypothetical protein; Provisional
Probab=86.01 E-value=0.62 Score=40.65 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.1
Q ss_pred EEEEecccccChhHHHHHHHH
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~ 78 (281)
+|.|+|+.++|||++.++|..
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999953
No 497
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=85.97 E-value=1.1 Score=42.14 Aligned_cols=30 Identities=27% Similarity=0.213 Sum_probs=25.6
Q ss_pred CceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
..+--+|.|+|+.++|||+|++.+...+..
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456788899999999999999999987643
No 498
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=85.91 E-value=0.64 Score=42.10 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.7
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+++|+|+.++|||.||..|..-+.
T Consensus 26 ~~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 26 QFNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4788999999999999999976653
No 499
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=85.87 E-value=0.52 Score=46.89 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+||+.|.+.+
T Consensus 28 e~~~liG~nGsGKSTLl~~i~G~~ 51 (500)
T TIGR02633 28 ECVGLCGENGAGKSTLMKILSGVY 51 (500)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378899999999999999998754
No 500
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=85.78 E-value=0.53 Score=47.04 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=21.0
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|++.+
T Consensus 290 ~~~l~G~NGsGKSTLlk~i~Gl~ 312 (506)
T PRK13549 290 ILGIAGLVGAGRTELVQCLFGAY 312 (506)
T ss_pred EEEEeCCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998764
Done!