Query psy5031
Match_columns 281
No_of_seqs 137 out of 488
Neff 5.2
Searched_HMMs 29240
Date Sat Aug 17 00:01:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ido_A Atlastin-1; GTPase, GTP 100.0 7.5E-51 2.6E-55 398.5 18.3 190 15-281 26-215 (457)
2 3q5d_A Atlastin-1; G protein, 100.0 4.2E-46 1.4E-50 364.2 16.6 189 16-281 27-215 (447)
3 1f5n_A Interferon-induced guan 99.9 3.8E-26 1.3E-30 229.9 13.3 161 19-281 6-181 (592)
4 4ido_A Atlastin-1; GTPase, GTP 98.1 2.1E-06 7.3E-11 84.2 5.0 42 92-133 98-139 (457)
5 3q5d_A Atlastin-1; G protein, 97.3 0.00017 5.8E-09 70.4 4.5 41 92-132 98-138 (447)
6 3lxw_A GTPase IMAP family memb 97.2 0.00084 2.9E-08 59.2 8.1 24 56-79 21-44 (247)
7 2xtp_A GTPase IMAP family memb 97.0 0.0032 1.1E-07 54.9 9.5 25 55-79 21-45 (260)
8 3iev_A GTP-binding protein ERA 96.9 0.0047 1.6E-07 56.2 10.2 27 53-79 7-33 (308)
9 3lxx_A GTPase IMAP family memb 96.9 0.0037 1.3E-07 53.9 8.8 26 54-79 27-52 (239)
10 4dhe_A Probable GTP-binding pr 96.6 0.0058 2E-07 51.2 8.0 23 56-78 29-51 (223)
11 1wf3_A GTP-binding protein; GT 96.2 0.013 4.4E-07 53.5 8.2 25 55-79 6-30 (301)
12 1ek0_A Protein (GTP-binding pr 96.2 0.013 4.5E-07 46.0 7.2 22 58-79 5-26 (170)
13 3t5d_A Septin-7; GTP-binding p 96.1 0.0078 2.7E-07 53.4 6.0 21 57-77 9-29 (274)
14 3pqc_A Probable GTP-binding pr 96.1 0.021 7.3E-07 46.1 8.0 23 57-79 24-46 (195)
15 2y8e_A RAB-protein 6, GH09086P 96.0 0.015 5.1E-07 46.2 6.9 23 57-79 15-37 (179)
16 1z0j_A RAB-22, RAS-related pro 96.0 0.019 6.4E-07 45.2 7.3 25 55-79 5-29 (170)
17 1wms_A RAB-9, RAB9, RAS-relate 96.0 0.024 8.4E-07 45.1 8.0 27 53-79 4-30 (177)
18 1z2a_A RAS-related protein RAB 96.0 0.014 4.7E-07 45.9 6.4 23 57-79 6-28 (168)
19 1vg8_A RAS-related protein RAB 95.9 0.023 7.9E-07 46.7 7.9 26 54-79 6-31 (207)
20 1r2q_A RAS-related protein RAB 95.9 0.02 7E-07 44.9 7.2 25 55-79 5-29 (170)
21 1z08_A RAS-related protein RAB 95.9 0.019 6.4E-07 45.4 6.9 25 55-79 5-29 (170)
22 2g6b_A RAS-related protein RAB 95.9 0.03 1E-06 44.6 8.2 26 54-79 8-33 (180)
23 1ega_A Protein (GTP-binding pr 95.8 0.016 5.6E-07 52.5 7.0 26 54-79 6-31 (301)
24 2qu8_A Putative nucleolar GTP- 95.8 0.042 1.4E-06 46.7 9.0 23 56-78 29-51 (228)
25 2oil_A CATX-8, RAS-related pro 95.7 0.026 8.8E-07 46.1 7.2 26 54-79 23-48 (193)
26 1kao_A RAP2A; GTP-binding prot 95.7 0.029 9.8E-07 43.7 7.1 22 58-79 5-26 (167)
27 3clv_A RAB5 protein, putative; 95.7 0.025 8.6E-07 45.5 6.8 23 57-79 8-30 (208)
28 1z0f_A RAB14, member RAS oncog 95.6 0.035 1.2E-06 44.0 7.5 26 54-79 13-38 (179)
29 1oix_A RAS-related protein RAB 95.6 0.042 1.4E-06 45.4 8.1 26 54-79 27-52 (191)
30 1z06_A RAS-related protein RAB 95.6 0.034 1.2E-06 45.3 7.3 27 53-79 17-43 (189)
31 1x3s_A RAS-related protein RAB 95.5 0.034 1.2E-06 44.9 7.2 25 55-79 14-38 (195)
32 1h65_A Chloroplast outer envel 95.5 0.041 1.4E-06 48.5 8.1 27 53-79 36-62 (270)
33 3tkl_A RAS-related protein RAB 95.4 0.055 1.9E-06 43.9 8.1 26 54-79 14-39 (196)
34 2zej_A Dardarin, leucine-rich 95.4 0.022 7.6E-07 46.6 5.7 21 58-78 4-24 (184)
35 2bme_A RAB4A, RAS-related prot 95.4 0.036 1.2E-06 44.5 6.8 25 55-79 9-33 (186)
36 2efe_B Small GTP-binding prote 95.4 0.048 1.6E-06 43.5 7.5 26 54-79 10-35 (181)
37 3tw8_B RAS-related protein RAB 95.3 0.034 1.2E-06 44.1 6.4 25 54-78 7-31 (181)
38 2fg5_A RAB-22B, RAS-related pr 95.3 0.041 1.4E-06 45.2 7.0 25 55-79 22-46 (192)
39 1zbd_A Rabphilin-3A; G protein 95.3 0.039 1.3E-06 45.3 6.9 25 55-79 7-31 (203)
40 2f9l_A RAB11B, member RAS onco 95.3 0.054 1.8E-06 44.8 7.6 25 55-79 4-28 (199)
41 2fn4_A P23, RAS-related protei 95.2 0.047 1.6E-06 43.3 6.9 25 55-79 8-32 (181)
42 2gf9_A RAS-related protein RAB 95.2 0.087 3E-06 42.8 8.6 26 54-79 20-45 (189)
43 3c8u_A Fructokinase; YP_612366 95.1 0.021 7.2E-07 48.4 4.9 28 54-81 20-47 (208)
44 3bc1_A RAS-related protein RAB 95.1 0.063 2.1E-06 43.0 7.4 26 54-79 9-34 (195)
45 3cph_A RAS-related protein SEC 95.1 0.042 1.4E-06 45.3 6.5 24 56-79 20-43 (213)
46 3def_A T7I23.11 protein; chlor 95.0 0.065 2.2E-06 47.1 7.9 25 55-79 35-59 (262)
47 2bcg_Y Protein YP2, GTP-bindin 95.0 0.042 1.4E-06 45.4 6.3 25 55-79 7-31 (206)
48 2nzj_A GTP-binding protein REM 94.9 0.042 1.4E-06 43.5 5.8 23 56-78 4-26 (175)
49 3q85_A GTP-binding protein REM 94.9 0.032 1.1E-06 44.0 5.0 22 57-78 3-24 (169)
50 3t5g_A GTP-binding protein RHE 94.9 0.097 3.3E-06 41.9 7.9 25 55-79 5-29 (181)
51 2il1_A RAB12; G-protein, GDP, 94.8 0.034 1.2E-06 45.7 5.3 24 55-78 25-48 (192)
52 2ew1_A RAS-related protein RAB 94.7 0.097 3.3E-06 43.9 7.9 26 54-79 24-49 (201)
53 3kkq_A RAS-related protein M-R 94.7 0.12 4.3E-06 41.3 8.2 27 53-79 15-41 (183)
54 1puj_A YLQF, conserved hypothe 94.7 0.033 1.1E-06 50.4 5.1 15 207-221 166-180 (282)
55 3asz_A Uridine kinase; cytidin 94.6 0.019 6.4E-07 48.2 3.2 26 56-81 6-31 (211)
56 2p5s_A RAS and EF-hand domain 94.6 0.052 1.8E-06 44.7 5.9 27 53-79 25-51 (199)
57 2a5j_A RAS-related protein RAB 94.6 0.094 3.2E-06 42.8 7.3 27 53-79 18-44 (191)
58 3tr0_A Guanylate kinase, GMP k 94.6 0.02 6.8E-07 47.5 3.1 23 58-80 9-31 (205)
59 1kgd_A CASK, peripheral plasma 94.4 0.023 7.9E-07 47.1 3.1 23 58-80 7-29 (180)
60 2o52_A RAS-related protein RAB 94.4 0.044 1.5E-06 45.5 4.8 25 55-79 24-48 (200)
61 1znw_A Guanylate kinase, GMP k 94.1 0.029 9.9E-07 47.4 3.1 23 58-80 22-44 (207)
62 2jeo_A Uridine-cytidine kinase 94.0 0.032 1.1E-06 48.5 3.3 24 57-80 26-49 (245)
63 2www_A Methylmalonic aciduria 93.8 0.035 1.2E-06 51.6 3.5 29 54-82 72-100 (349)
64 3a00_A Guanylate kinase, GMP k 93.8 0.029 1E-06 46.6 2.6 24 58-81 3-26 (186)
65 1lvg_A Guanylate kinase, GMP k 93.8 0.029 9.8E-07 47.5 2.6 23 58-80 6-28 (198)
66 2yc2_C IFT27, small RAB-relate 93.8 0.041 1.4E-06 45.0 3.4 25 55-79 19-43 (208)
67 2j41_A Guanylate kinase; GMP, 93.7 0.035 1.2E-06 45.9 3.0 23 58-80 8-30 (207)
68 4a9a_A Ribosome-interacting GT 93.7 0.055 1.9E-06 51.5 4.7 24 55-78 71-94 (376)
69 1jwy_B Dynamin A GTPase domain 93.7 0.04 1.4E-06 49.0 3.5 26 54-79 22-47 (315)
70 3cpj_B GTP-binding protein YPT 93.6 0.14 4.8E-06 43.1 6.7 26 54-79 11-36 (223)
71 2hup_A RAS-related protein RAB 93.5 0.14 4.9E-06 42.4 6.5 26 54-79 27-52 (201)
72 1rz3_A Hypothetical protein rb 93.5 0.07 2.4E-06 44.9 4.6 39 40-81 9-47 (201)
73 1odf_A YGR205W, hypothetical 3 93.5 0.067 2.3E-06 48.7 4.6 29 54-82 29-57 (290)
74 1z6g_A Guanylate kinase; struc 93.5 0.035 1.2E-06 47.8 2.6 23 58-80 25-47 (218)
75 1ye8_A Protein THEP1, hypothet 93.4 0.049 1.7E-06 45.9 3.3 23 58-80 2-24 (178)
76 1kag_A SKI, shikimate kinase I 93.4 0.04 1.4E-06 44.4 2.7 23 58-80 6-28 (173)
77 3aez_A Pantothenate kinase; tr 93.4 0.045 1.5E-06 50.4 3.3 29 54-82 88-116 (312)
78 3b85_A Phosphate starvation-in 93.3 0.047 1.6E-06 47.3 3.1 24 58-82 24-47 (208)
79 3tif_A Uncharacterized ABC tra 93.3 0.035 1.2E-06 48.8 2.3 23 58-80 33-55 (235)
80 1zp6_A Hypothetical protein AT 93.2 0.041 1.4E-06 45.1 2.6 23 57-79 10-32 (191)
81 1cke_A CK, MSSA, protein (cyti 93.1 0.056 1.9E-06 45.5 3.3 23 58-80 7-29 (227)
82 2wsm_A Hydrogenase expression/ 93.1 0.029 9.9E-07 47.0 1.5 27 54-80 28-54 (221)
83 1s96_A Guanylate kinase, GMP k 93.1 0.052 1.8E-06 47.3 3.1 24 57-80 17-40 (219)
84 4e22_A Cytidylate kinase; P-lo 93.0 0.056 1.9E-06 47.5 3.3 23 57-79 28-50 (252)
85 2eyu_A Twitching motility prot 93.0 0.056 1.9E-06 48.4 3.3 26 57-82 26-51 (261)
86 3kb2_A SPBC2 prophage-derived 93.0 0.064 2.2E-06 42.8 3.4 24 58-81 3-26 (173)
87 1u8z_A RAS-related protein RAL 93.0 0.055 1.9E-06 42.1 2.9 23 57-79 5-27 (168)
88 4gp7_A Metallophosphoesterase; 93.0 0.051 1.8E-06 44.8 2.8 20 57-76 10-29 (171)
89 3uie_A Adenylyl-sulfate kinase 92.9 0.063 2.1E-06 45.0 3.3 27 55-81 24-50 (200)
90 3sop_A Neuronal-specific septi 92.9 0.052 1.8E-06 48.8 3.0 25 58-82 4-28 (270)
91 4eun_A Thermoresistant glucoki 92.9 0.062 2.1E-06 45.0 3.3 25 56-80 29-53 (200)
92 2pcj_A ABC transporter, lipopr 92.9 0.039 1.3E-06 48.0 2.1 23 58-80 32-54 (224)
93 1ky3_A GTP-binding protein YPT 92.9 0.077 2.6E-06 42.1 3.6 26 54-79 6-31 (182)
94 3tqc_A Pantothenate kinase; bi 92.9 0.11 3.7E-06 48.3 5.1 28 54-81 90-117 (321)
95 1c1y_A RAS-related protein RAP 92.9 0.06 2E-06 42.1 2.9 22 58-79 5-26 (167)
96 1g16_A RAS-related protein SEC 92.8 0.056 1.9E-06 42.4 2.7 23 57-79 4-26 (170)
97 2onk_A Molybdate/tungstate ABC 92.8 0.043 1.5E-06 48.6 2.3 25 57-81 25-49 (240)
98 2erx_A GTP-binding protein DI- 92.8 0.053 1.8E-06 42.5 2.6 22 58-79 5-26 (172)
99 2ehv_A Hypothetical protein PH 92.7 0.06 2.1E-06 45.6 3.0 23 57-79 31-53 (251)
100 2wji_A Ferrous iron transport 92.7 0.062 2.1E-06 43.1 2.9 23 57-79 4-26 (165)
101 4a74_A DNA repair and recombin 92.7 0.062 2.1E-06 45.0 3.0 38 40-80 12-49 (231)
102 2dyk_A GTP-binding protein; GT 92.7 0.065 2.2E-06 41.8 2.9 22 58-79 3-24 (161)
103 3tau_A Guanylate kinase, GMP k 92.7 0.063 2.1E-06 45.6 3.0 24 57-80 9-32 (208)
104 1htw_A HI0065; nucleotide-bind 92.6 0.074 2.5E-06 44.2 3.3 25 56-80 33-57 (158)
105 2bbw_A Adenylate kinase 4, AK4 92.6 0.071 2.4E-06 46.1 3.3 24 57-80 28-51 (246)
106 1g6h_A High-affinity branched- 92.6 0.049 1.7E-06 48.4 2.3 24 57-80 34-57 (257)
107 2pze_A Cystic fibrosis transme 92.6 0.049 1.7E-06 47.6 2.3 23 58-80 36-58 (229)
108 2ce2_X GTPase HRAS; signaling 92.6 0.064 2.2E-06 41.5 2.7 22 58-79 5-26 (166)
109 2cbz_A Multidrug resistance-as 92.6 0.05 1.7E-06 47.8 2.3 24 58-81 33-56 (237)
110 1sq5_A Pantothenate kinase; P- 92.5 0.066 2.3E-06 48.6 3.2 27 55-81 79-105 (308)
111 1nij_A Hypothetical protein YJ 92.5 0.074 2.5E-06 48.5 3.5 26 55-80 3-28 (318)
112 3lnc_A Guanylate kinase, GMP k 92.5 0.051 1.7E-06 46.5 2.3 24 57-80 28-52 (231)
113 2qag_A Septin-2, protein NEDD5 92.5 0.093 3.2E-06 49.0 4.2 20 59-78 40-59 (361)
114 2bdt_A BH3686; alpha-beta prot 92.4 0.076 2.6E-06 43.7 3.1 23 57-79 3-25 (189)
115 2d2e_A SUFC protein; ABC-ATPas 92.4 0.064 2.2E-06 47.4 2.8 22 58-79 31-52 (250)
116 1mv5_A LMRA, multidrug resista 92.4 0.054 1.9E-06 47.6 2.3 25 57-81 29-53 (243)
117 4dsu_A GTPase KRAS, isoform 2B 92.4 0.073 2.5E-06 42.6 2.9 24 56-79 4-27 (189)
118 2v9p_A Replication protein E1; 92.4 0.077 2.6E-06 49.1 3.4 38 39-80 113-150 (305)
119 3gj0_A GTP-binding nuclear pro 92.3 0.12 4.3E-06 43.2 4.4 26 54-79 13-38 (221)
120 1knq_A Gluconate kinase; ALFA/ 92.3 0.087 3E-06 42.7 3.3 24 57-80 9-32 (175)
121 1b0u_A Histidine permease; ABC 92.3 0.056 1.9E-06 48.3 2.3 23 58-80 34-56 (262)
122 1ji0_A ABC transporter; ATP bi 92.3 0.057 2E-06 47.5 2.3 23 58-80 34-56 (240)
123 2qm8_A GTPase/ATPase; G protei 92.3 0.078 2.7E-06 49.1 3.3 39 40-82 43-81 (337)
124 1upt_A ARL1, ADP-ribosylation 92.2 0.08 2.7E-06 41.7 2.9 23 57-79 8-30 (171)
125 2ff7_A Alpha-hemolysin translo 92.2 0.058 2E-06 47.8 2.3 23 58-80 37-59 (247)
126 2gj8_A MNME, tRNA modification 92.2 0.064 2.2E-06 43.6 2.4 22 58-79 6-27 (172)
127 2f1r_A Molybdopterin-guanine d 92.2 0.051 1.8E-06 45.8 1.9 26 57-82 3-28 (171)
128 2e87_A Hypothetical protein PH 92.2 0.98 3.4E-05 41.5 10.7 25 54-78 165-189 (357)
129 4g1u_C Hemin import ATP-bindin 92.2 0.055 1.9E-06 48.6 2.1 23 58-80 39-61 (266)
130 3gfo_A Cobalt import ATP-bindi 92.2 0.058 2E-06 48.9 2.3 23 58-80 36-58 (275)
131 3ec2_A DNA replication protein 92.2 0.086 2.9E-06 43.1 3.2 26 56-81 38-63 (180)
132 2hf9_A Probable hydrogenase ni 92.2 0.049 1.7E-06 45.7 1.7 27 54-80 36-62 (226)
133 2zu0_C Probable ATP-dependent 92.2 0.07 2.4E-06 47.8 2.8 22 58-79 48-69 (267)
134 1r8s_A ADP-ribosylation factor 92.2 0.086 2.9E-06 41.3 3.0 21 59-79 3-23 (164)
135 3lw7_A Adenylate kinase relate 92.2 0.079 2.7E-06 41.8 2.8 21 58-79 3-23 (179)
136 1svi_A GTP-binding protein YSX 92.1 0.067 2.3E-06 43.4 2.4 25 55-79 22-46 (195)
137 1sgw_A Putative ABC transporte 92.1 0.05 1.7E-06 47.4 1.7 23 58-80 37-59 (214)
138 1gtv_A TMK, thymidylate kinase 92.1 0.056 1.9E-06 45.0 1.9 25 58-82 2-26 (214)
139 3ney_A 55 kDa erythrocyte memb 92.0 0.091 3.1E-06 45.6 3.3 23 58-80 21-43 (197)
140 2wjg_A FEOB, ferrous iron tran 92.0 0.076 2.6E-06 42.8 2.6 24 56-79 7-30 (188)
141 1np6_A Molybdopterin-guanine d 92.0 0.097 3.3E-06 44.2 3.3 27 56-82 6-32 (174)
142 1vpl_A ABC transporter, ATP-bi 92.0 0.065 2.2E-06 47.9 2.3 23 58-80 43-65 (256)
143 3llu_A RAS-related GTP-binding 91.9 0.16 5.4E-06 41.8 4.5 25 54-78 18-42 (196)
144 2ixe_A Antigen peptide transpo 91.9 0.067 2.3E-06 48.1 2.3 23 58-80 47-69 (271)
145 2lkc_A Translation initiation 91.9 0.081 2.8E-06 42.0 2.5 24 56-79 8-31 (178)
146 2nq2_C Hypothetical ABC transp 91.8 0.069 2.4E-06 47.5 2.3 23 58-80 33-55 (253)
147 2olj_A Amino acid ABC transpor 91.8 0.068 2.3E-06 48.0 2.3 24 58-81 52-75 (263)
148 2ghi_A Transport protein; mult 91.8 0.069 2.4E-06 47.6 2.3 23 58-80 48-70 (260)
149 2ged_A SR-beta, signal recogni 91.8 0.093 3.2E-06 42.6 2.9 25 55-79 47-71 (193)
150 2hxs_A RAB-26, RAS-related pro 91.7 0.15 5E-06 40.5 3.9 25 55-79 5-29 (178)
151 2if2_A Dephospho-COA kinase; a 91.7 0.095 3.3E-06 43.5 3.0 21 58-78 3-23 (204)
152 2qi9_C Vitamin B12 import ATP- 91.7 0.071 2.4E-06 47.5 2.3 23 58-80 28-50 (249)
153 2yz2_A Putative ABC transporte 91.7 0.071 2.4E-06 47.6 2.3 23 58-80 35-57 (266)
154 2a9k_A RAS-related protein RAL 91.7 0.098 3.3E-06 41.7 2.9 25 55-79 17-41 (187)
155 1uf9_A TT1252 protein; P-loop, 91.7 0.097 3.3E-06 43.0 2.9 23 57-79 9-31 (203)
156 3t61_A Gluconokinase; PSI-biol 91.6 0.091 3.1E-06 43.8 2.7 24 57-80 19-42 (202)
157 2aka_B Dynamin-1; fusion prote 91.6 0.077 2.6E-06 46.6 2.4 25 55-79 25-49 (299)
158 2qt1_A Nicotinamide riboside k 91.6 0.085 2.9E-06 44.1 2.5 26 55-80 20-45 (207)
159 2kjq_A DNAA-related protein; s 91.6 0.11 3.8E-06 42.3 3.2 39 37-81 23-61 (149)
160 2bov_A RAla, RAS-related prote 91.6 0.14 4.9E-06 41.6 3.8 27 53-79 11-37 (206)
161 1pui_A ENGB, probable GTP-bind 91.5 0.051 1.8E-06 44.9 1.1 25 55-79 25-49 (210)
162 2qor_A Guanylate kinase; phosp 91.5 0.089 3E-06 44.2 2.6 23 58-80 14-36 (204)
163 1kht_A Adenylate kinase; phosp 91.5 0.12 4.2E-06 41.8 3.3 24 58-81 5-28 (192)
164 2jaq_A Deoxyguanosine kinase; 91.5 0.12 4.2E-06 42.3 3.3 24 58-81 2-25 (205)
165 2gf0_A GTP-binding protein DI- 91.5 0.099 3.4E-06 42.4 2.7 23 57-79 9-31 (199)
166 2ihy_A ABC transporter, ATP-bi 91.4 0.079 2.7E-06 47.9 2.3 24 58-81 49-72 (279)
167 2cxx_A Probable GTP-binding pr 91.4 0.084 2.9E-06 42.4 2.2 22 58-79 3-24 (190)
168 3jvv_A Twitching mobility prot 91.4 0.11 3.8E-06 48.7 3.4 26 57-82 124-149 (356)
169 1xjc_A MOBB protein homolog; s 91.4 0.097 3.3E-06 44.4 2.7 28 55-82 3-30 (169)
170 1nks_A Adenylate kinase; therm 91.4 0.12 4.1E-06 41.8 3.1 24 58-81 3-26 (194)
171 3con_A GTPase NRAS; structural 91.3 0.11 3.8E-06 42.0 2.9 25 55-79 20-44 (190)
172 1jjv_A Dephospho-COA kinase; P 91.3 0.1 3.6E-06 43.4 2.8 21 58-78 4-24 (206)
173 2i3b_A HCR-ntpase, human cance 91.3 0.1 3.6E-06 44.4 2.8 24 58-81 3-26 (189)
174 2iwr_A Centaurin gamma 1; ANK 91.2 0.11 3.7E-06 41.5 2.7 25 55-79 6-30 (178)
175 3q72_A GTP-binding protein RAD 91.2 0.099 3.4E-06 41.0 2.4 21 58-78 4-24 (166)
176 1jbk_A CLPB protein; beta barr 91.2 0.13 4.5E-06 40.7 3.2 44 37-82 26-69 (195)
177 3ake_A Cytidylate kinase; CMP 91.1 0.14 4.7E-06 42.3 3.3 23 58-80 4-26 (208)
178 2w0m_A SSO2452; RECA, SSPF, un 91.0 0.14 4.9E-06 42.4 3.3 25 57-81 24-48 (235)
179 3t34_A Dynamin-related protein 91.0 0.1 3.4E-06 48.1 2.6 23 57-79 35-57 (360)
180 1mh1_A RAC1; GTP-binding, GTPa 91.0 0.13 4.4E-06 41.0 2.9 23 57-79 6-28 (186)
181 1rj9_A FTSY, signal recognitio 91.0 0.13 4.6E-06 47.1 3.3 27 56-82 102-128 (304)
182 1uj2_A Uridine-cytidine kinase 90.9 0.14 4.7E-06 44.7 3.2 26 56-81 22-47 (252)
183 3dz8_A RAS-related protein RAB 90.9 0.13 4.3E-06 42.0 2.9 25 55-79 22-46 (191)
184 2qag_B Septin-6, protein NEDD5 90.9 0.11 3.7E-06 50.4 2.8 29 51-79 37-65 (427)
185 4dcu_A GTP-binding protein ENG 90.8 0.45 1.6E-05 45.3 7.0 17 134-150 201-217 (456)
186 3oes_A GTPase rhebl1; small GT 90.8 0.12 4.3E-06 42.5 2.7 26 54-79 22-47 (201)
187 3nh6_A ATP-binding cassette SU 90.8 0.071 2.4E-06 49.1 1.3 25 57-81 81-105 (306)
188 2bwj_A Adenylate kinase 5; pho 90.7 0.15 5.1E-06 41.7 3.2 23 58-80 14-36 (199)
189 1tq4_A IIGP1, interferon-induc 90.7 0.11 3.7E-06 50.0 2.6 25 56-80 69-93 (413)
190 3bwd_D RAC-like GTP-binding pr 90.7 0.14 4.9E-06 40.7 2.9 23 57-79 9-31 (182)
191 1p9r_A General secretion pathw 90.7 0.14 4.8E-06 49.2 3.3 28 55-82 166-193 (418)
192 2ewv_A Twitching motility prot 90.6 0.15 5E-06 47.9 3.4 27 56-82 136-162 (372)
193 1tev_A UMP-CMP kinase; ploop, 90.6 0.17 5.7E-06 41.0 3.3 24 57-80 4-27 (196)
194 1ly1_A Polynucleotide kinase; 90.6 0.16 5.4E-06 40.7 3.1 21 58-78 4-24 (181)
195 3ihw_A Centg3; RAS, centaurin, 90.6 0.14 4.8E-06 42.0 2.9 27 53-79 17-43 (184)
196 1vht_A Dephospho-COA kinase; s 90.5 0.15 5.2E-06 42.9 3.1 22 57-78 5-26 (218)
197 1zd9_A ADP-ribosylation factor 90.5 0.23 7.7E-06 40.5 4.0 27 53-79 19-45 (188)
198 1u0l_A Probable GTPase ENGC; p 90.4 0.1 3.6E-06 47.2 2.1 22 58-79 171-192 (301)
199 2yv5_A YJEQ protein; hydrolase 90.4 0.14 4.9E-06 46.4 3.0 20 58-77 167-186 (302)
200 2pez_A Bifunctional 3'-phospho 90.4 0.18 6.2E-06 41.1 3.3 25 57-81 6-30 (179)
201 2h17_A ADP-ribosylation factor 90.4 0.12 4E-06 41.8 2.2 24 56-79 21-44 (181)
202 2rhm_A Putative kinase; P-loop 90.3 0.17 5.9E-06 41.2 3.2 24 57-80 6-29 (193)
203 2pbr_A DTMP kinase, thymidylat 90.3 0.18 6.3E-06 40.8 3.3 24 58-81 2-25 (195)
204 1ksh_A ARF-like protein 2; sma 90.3 0.12 3.9E-06 41.7 2.1 25 54-78 16-40 (186)
205 2pjz_A Hypothetical protein ST 90.3 0.12 4E-06 46.5 2.3 23 58-80 32-54 (263)
206 2atv_A RERG, RAS-like estrogen 90.3 0.16 5.4E-06 41.6 2.9 26 54-79 26-51 (196)
207 2c95_A Adenylate kinase 1; tra 90.3 0.17 6E-06 41.2 3.2 23 58-80 11-33 (196)
208 2z0h_A DTMP kinase, thymidylat 90.2 0.19 6.5E-06 41.0 3.3 24 58-81 2-25 (197)
209 3p32_A Probable GTPase RV1496/ 90.2 0.24 8.1E-06 45.8 4.4 28 54-81 77-104 (355)
210 1qhx_A CPT, protein (chloramph 90.2 0.18 6.3E-06 40.6 3.2 23 58-80 5-27 (178)
211 2gza_A Type IV secretion syste 90.2 0.11 3.7E-06 48.5 2.0 23 58-80 177-199 (361)
212 2xex_A Elongation factor G; GT 90.2 0.72 2.4E-05 46.8 8.2 27 53-79 7-33 (693)
213 3b9q_A Chloroplast SRP recepto 90.1 0.17 5.9E-06 46.2 3.3 26 57-82 101-126 (302)
214 3c5c_A RAS-like protein 12; GD 90.1 0.22 7.4E-06 40.7 3.6 27 53-79 18-44 (187)
215 3cm0_A Adenylate kinase; ATP-b 90.1 0.2 6.7E-06 40.8 3.3 23 58-80 6-28 (186)
216 2cjw_A GTP-binding protein GEM 90.1 0.22 7.6E-06 41.1 3.7 25 55-79 5-29 (192)
217 2bbs_A Cystic fibrosis transme 90.0 0.12 4.1E-06 47.1 2.1 24 58-81 66-89 (290)
218 3e70_C DPA, signal recognition 90.0 0.18 6.2E-06 46.8 3.4 28 55-82 128-155 (328)
219 1qf9_A UMP/CMP kinase, protein 90.0 0.19 6.5E-06 40.6 3.2 24 57-80 7-30 (194)
220 1zj6_A ADP-ribosylation factor 89.9 0.16 5.3E-06 41.2 2.6 25 55-79 15-39 (187)
221 2plr_A DTMP kinase, probable t 89.9 0.2 7E-06 41.2 3.3 25 57-81 5-29 (213)
222 2rcn_A Probable GTPase ENGC; Y 89.9 0.16 5.5E-06 48.0 3.0 22 58-79 217-238 (358)
223 3vaa_A Shikimate kinase, SK; s 89.9 0.2 6.9E-06 41.8 3.3 24 57-80 26-49 (199)
224 1nrj_B SR-beta, signal recogni 89.9 0.17 6E-06 41.9 2.9 25 55-79 11-35 (218)
225 1m7b_A RND3/RHOE small GTP-bin 89.9 0.22 7.6E-06 40.2 3.5 25 55-79 6-30 (184)
226 2wwf_A Thymidilate kinase, put 89.8 0.2 6.7E-06 41.5 3.2 26 57-82 11-36 (212)
227 1moz_A ARL1, ADP-ribosylation 89.8 0.12 3.9E-06 41.4 1.6 24 55-78 17-40 (183)
228 3tui_C Methionine import ATP-b 89.8 0.16 5.4E-06 48.3 2.8 25 57-81 55-79 (366)
229 2ze6_A Isopentenyl transferase 89.7 0.2 6.9E-06 44.1 3.3 25 58-82 3-27 (253)
230 2fv8_A H6, RHO-related GTP-bin 89.7 0.17 5.9E-06 41.9 2.7 23 57-79 26-48 (207)
231 1e6c_A Shikimate kinase; phosp 89.7 0.18 6.2E-06 40.4 2.8 23 58-80 4-26 (173)
232 2vp4_A Deoxynucleoside kinase; 89.5 0.14 4.9E-06 44.0 2.1 26 54-79 18-43 (230)
233 3k53_A Ferrous iron transport 89.5 0.17 5.7E-06 44.6 2.6 24 56-79 3-26 (271)
234 1via_A Shikimate kinase; struc 89.5 0.19 6.4E-06 40.8 2.7 23 58-80 6-28 (175)
235 1a7j_A Phosphoribulokinase; tr 89.5 0.16 5.5E-06 45.9 2.5 24 58-81 7-30 (290)
236 2f7s_A C25KG, RAS-related prot 89.5 0.19 6.4E-06 41.7 2.8 26 54-79 23-48 (217)
237 4dkx_A RAS-related protein RAB 89.4 0.53 1.8E-05 40.6 5.7 22 58-79 15-36 (216)
238 2pt5_A Shikimate kinase, SK; a 89.4 0.24 8.4E-06 39.5 3.3 23 58-80 2-24 (168)
239 1m2o_B GTP-binding protein SAR 89.4 0.19 6.6E-06 41.3 2.7 23 57-79 24-46 (190)
240 1zuh_A Shikimate kinase; alpha 89.4 0.25 8.4E-06 39.8 3.3 28 54-81 5-32 (168)
241 2atx_A Small GTP binding prote 89.3 0.28 9.7E-06 39.8 3.7 27 53-79 15-41 (194)
242 1nn5_A Similar to deoxythymidy 89.3 0.23 7.7E-06 41.2 3.2 24 58-81 11-34 (215)
243 1z47_A CYSA, putative ABC-tran 89.3 0.18 6.2E-06 47.5 2.8 24 58-81 43-66 (355)
244 2qtf_A Protein HFLX, GTP-bindi 89.3 0.17 5.8E-06 47.5 2.6 25 55-79 178-202 (364)
245 2fu5_C RAS-related protein RAB 89.3 0.17 5.9E-06 40.5 2.3 25 55-79 7-31 (183)
246 2fh5_B SR-beta, signal recogni 89.3 0.21 7.2E-06 41.3 2.9 25 55-79 6-30 (214)
247 1lw7_A Transcriptional regulat 89.3 0.19 6.6E-06 46.3 3.0 27 56-82 170-196 (365)
248 3reg_A RHO-like small GTPase; 89.2 0.31 1.1E-05 39.6 3.9 27 53-79 20-46 (194)
249 2pt7_A CAG-ALFA; ATPase, prote 89.2 0.12 4.1E-06 47.7 1.5 23 58-80 173-195 (330)
250 1g29_1 MALK, maltose transport 89.0 0.19 6.6E-06 47.5 2.8 24 58-81 31-54 (372)
251 2gco_A H9, RHO-related GTP-bin 89.0 0.21 7.1E-06 41.2 2.7 23 57-79 26-48 (201)
252 3fvq_A Fe(3+) IONS import ATP- 89.0 0.18 6.3E-06 47.6 2.6 24 58-81 32-55 (359)
253 2p5t_B PEZT; postsegregational 89.0 0.53 1.8E-05 41.0 5.5 24 57-80 33-56 (253)
254 2v54_A DTMP kinase, thymidylat 89.0 0.24 8.1E-06 40.8 3.0 23 58-80 6-28 (204)
255 2yyz_A Sugar ABC transporter, 89.0 0.2 6.7E-06 47.3 2.8 24 58-81 31-54 (359)
256 1gwn_A RHO-related GTP-binding 89.0 0.21 7.1E-06 41.9 2.7 25 55-79 27-51 (205)
257 2yvu_A Probable adenylyl-sulfa 89.0 0.29 1E-05 40.1 3.6 28 55-82 12-39 (186)
258 2iyv_A Shikimate kinase, SK; t 89.0 0.2 6.8E-06 40.8 2.5 23 58-80 4-26 (184)
259 2p67_A LAO/AO transport system 89.0 0.32 1.1E-05 44.8 4.1 28 54-81 54-81 (341)
260 4bas_A ADP-ribosylation factor 88.9 0.2 6.9E-06 40.5 2.5 27 53-79 14-40 (199)
261 3trf_A Shikimate kinase, SK; a 88.9 0.27 9.4E-06 39.9 3.3 23 58-80 7-29 (185)
262 2it1_A 362AA long hypothetical 88.9 0.2 6.9E-06 47.3 2.8 24 58-81 31-54 (362)
263 2p65_A Hypothetical protein PF 88.9 0.24 8.3E-06 39.3 2.9 24 59-82 46-69 (187)
264 3rlf_A Maltose/maltodextrin im 88.8 0.2 7E-06 47.7 2.8 24 58-81 31-54 (381)
265 1v43_A Sugar-binding transport 88.7 0.21 7.1E-06 47.3 2.8 24 58-81 39-62 (372)
266 1ukz_A Uridylate kinase; trans 88.6 0.32 1.1E-05 40.2 3.6 26 55-80 14-39 (203)
267 3r20_A Cytidylate kinase; stru 88.5 0.28 9.6E-06 43.5 3.3 24 57-80 10-33 (233)
268 2og2_A Putative signal recogni 88.5 0.26 8.9E-06 46.4 3.3 27 56-82 157-183 (359)
269 2cvh_A DNA repair and recombin 88.5 0.28 9.5E-06 40.6 3.1 36 40-78 7-42 (220)
270 3fb4_A Adenylate kinase; psych 88.5 0.3 1E-05 40.8 3.3 23 58-80 2-24 (216)
271 2q3h_A RAS homolog gene family 88.4 0.25 8.4E-06 40.4 2.8 25 55-79 19-43 (201)
272 3t1o_A Gliding protein MGLA; G 88.4 0.41 1.4E-05 38.3 4.0 27 53-79 11-37 (198)
273 2grj_A Dephospho-COA kinase; T 88.3 0.32 1.1E-05 41.4 3.5 27 54-80 10-36 (192)
274 1n0u_A EF-2, elongation factor 88.3 1.2 4.2E-05 46.2 8.5 38 38-79 5-42 (842)
275 2h57_A ADP-ribosylation factor 88.2 0.19 6.4E-06 40.8 1.9 24 56-79 21-44 (190)
276 3q3j_B RHO-related GTP-binding 88.2 0.27 9.2E-06 41.3 2.9 25 55-79 26-50 (214)
277 2h5e_A Peptide chain release f 88.1 0.5 1.7E-05 46.5 5.2 25 55-79 12-36 (529)
278 2j0v_A RAC-like GTP-binding pr 88.0 0.44 1.5E-05 39.3 4.1 26 54-79 7-32 (212)
279 3bos_A Putative DNA replicatio 88.0 0.25 8.5E-06 41.0 2.6 44 37-82 35-78 (242)
280 2cdn_A Adenylate kinase; phosp 87.9 0.34 1.2E-05 40.2 3.3 23 58-80 22-44 (201)
281 2chg_A Replication factor C sm 87.9 0.25 8.5E-06 40.0 2.4 24 59-82 41-64 (226)
282 3d31_A Sulfate/molybdate ABC t 87.9 0.18 6.3E-06 47.2 1.8 24 58-81 28-51 (348)
283 3iij_A Coilin-interacting nucl 87.9 0.28 9.6E-06 39.9 2.8 24 57-80 12-35 (180)
284 3cbq_A GTP-binding protein REM 87.9 0.28 9.6E-06 40.6 2.8 24 54-77 21-44 (195)
285 1fzq_A ADP-ribosylation factor 87.8 0.28 9.5E-06 39.8 2.7 25 54-78 14-38 (181)
286 1n0w_A DNA repair protein RAD5 87.8 0.32 1.1E-05 40.9 3.1 37 40-79 11-47 (243)
287 1oxx_K GLCV, glucose, ABC tran 87.8 0.17 5.8E-06 47.5 1.5 24 58-81 33-56 (353)
288 2x2e_A Dynamin-1; nitration, h 87.8 0.14 4.9E-06 47.1 1.0 24 56-79 31-54 (353)
289 1cr0_A DNA primase/helicase; R 87.8 0.31 1E-05 43.2 3.2 37 41-81 24-60 (296)
290 1mky_A Probable GTP-binding pr 87.8 0.24 8.2E-06 47.0 2.6 24 56-79 180-203 (439)
291 2yhs_A FTSY, cell division pro 87.8 0.3 1E-05 48.4 3.3 27 56-82 293-319 (503)
292 2x77_A ADP-ribosylation factor 87.8 0.19 6.5E-06 40.6 1.6 23 55-77 21-43 (189)
293 4gzl_A RAS-related C3 botulinu 87.7 0.28 9.7E-06 40.7 2.7 25 55-79 29-53 (204)
294 2vli_A Antibiotic resistance p 87.7 0.28 9.6E-06 39.6 2.6 23 58-80 7-29 (183)
295 2j1l_A RHO-related GTP-binding 87.7 0.27 9.2E-06 41.1 2.6 25 55-79 33-57 (214)
296 1t9h_A YLOQ, probable GTPase E 87.6 0.15 5E-06 47.2 1.0 22 58-79 175-196 (307)
297 1yrb_A ATP(GTP)binding protein 87.5 0.44 1.5E-05 40.8 3.9 30 52-81 10-39 (262)
298 2qnr_A Septin-2, protein NEDD5 87.5 0.24 8.2E-06 44.9 2.3 20 60-79 22-41 (301)
299 3gd7_A Fusion complex of cysti 87.5 0.26 8.9E-06 47.0 2.6 23 58-80 49-71 (390)
300 2qpt_A EH domain-containing pr 87.5 0.25 8.5E-06 48.9 2.6 25 55-79 64-88 (550)
301 3iby_A Ferrous iron transport 87.4 0.26 8.8E-06 43.6 2.4 22 58-79 3-24 (256)
302 1dar_A EF-G, elongation factor 87.4 0.96 3.3E-05 45.9 6.9 26 54-79 10-35 (691)
303 3i8s_A Ferrous iron transport 87.2 0.26 9E-06 43.7 2.4 22 58-79 5-26 (274)
304 1ex7_A Guanylate kinase; subst 87.2 0.34 1.2E-05 41.4 3.0 21 59-79 4-24 (186)
305 1w5s_A Origin recognition comp 87.2 0.35 1.2E-05 44.0 3.2 29 54-82 50-78 (412)
306 2npi_A Protein CLP1; CLP1-PCF1 87.2 0.25 8.6E-06 47.9 2.4 25 58-82 140-164 (460)
307 2b6h_A ADP-ribosylation factor 87.2 0.34 1.2E-05 39.8 2.9 24 54-77 27-50 (192)
308 1f6b_A SAR1; gtpases, N-termin 87.1 0.26 9E-06 40.8 2.2 21 58-78 27-47 (198)
309 3ozx_A RNAse L inhibitor; ATP 87.1 0.25 8.5E-06 48.9 2.3 24 57-80 26-49 (538)
310 2rdo_7 EF-G, elongation factor 87.0 2 6.7E-05 43.7 9.0 26 54-79 8-33 (704)
311 1ni3_A YCHF GTPase, YCHF GTP-b 87.0 0.32 1.1E-05 46.4 3.0 23 57-79 21-43 (392)
312 1yqt_A RNAse L inhibitor; ATP- 87.0 0.3 1E-05 48.2 2.8 23 58-80 49-71 (538)
313 1q3t_A Cytidylate kinase; nucl 87.0 0.4 1.4E-05 41.1 3.4 25 56-80 16-40 (236)
314 3kta_A Chromosome segregation 87.0 0.35 1.2E-05 39.3 2.8 23 58-80 28-50 (182)
315 1ixz_A ATP-dependent metallopr 87.0 0.36 1.2E-05 41.5 3.1 22 59-80 52-73 (254)
316 1nlf_A Regulatory protein REPA 87.0 0.37 1.3E-05 42.4 3.2 24 57-80 31-54 (279)
317 3qq5_A Small GTP-binding prote 86.8 0.79 2.7E-05 44.0 5.6 24 55-78 33-56 (423)
318 1zd8_A GTP:AMP phosphotransfer 86.8 0.38 1.3E-05 40.9 3.0 24 57-80 8-31 (227)
319 3szr_A Interferon-induced GTP- 86.8 0.22 7.5E-06 49.8 1.8 25 56-80 45-69 (608)
320 3dl0_A Adenylate kinase; phosp 86.8 0.41 1.4E-05 40.1 3.2 23 58-80 2-24 (216)
321 3cb4_D GTP-binding protein LEP 86.8 0.98 3.3E-05 45.3 6.5 25 55-79 3-27 (599)
322 1m7g_A Adenylylsulfate kinase; 86.7 0.43 1.5E-05 40.1 3.3 25 57-81 26-50 (211)
323 1y63_A LMAJ004144AAA protein; 86.7 0.43 1.5E-05 39.3 3.3 22 58-79 12-33 (184)
324 1gvn_B Zeta; postsegregational 86.7 0.89 3.1E-05 40.8 5.6 24 57-80 34-57 (287)
325 1sxj_E Activator 1 40 kDa subu 86.7 0.58 2E-05 41.9 4.4 46 35-82 16-62 (354)
326 2ywe_A GTP-binding protein LEP 86.7 1 3.5E-05 45.3 6.5 25 55-79 5-29 (600)
327 2qag_C Septin-7; cell cycle, c 86.6 0.26 8.7E-06 47.4 2.1 20 60-79 35-54 (418)
328 2oap_1 GSPE-2, type II secreti 86.5 0.24 8.2E-06 48.7 1.9 42 37-82 245-286 (511)
329 4djt_A GTP-binding nuclear pro 86.5 0.13 4.3E-06 42.8 -0.1 24 55-78 10-33 (218)
330 1udx_A The GTP-binding protein 86.5 0.18 6.3E-06 48.4 1.0 24 56-79 157-180 (416)
331 3b5x_A Lipid A export ATP-bind 86.4 0.32 1.1E-05 48.0 2.7 25 57-81 370-394 (582)
332 3b1v_A Ferrous iron uptake tra 86.3 0.31 1.1E-05 43.6 2.4 23 57-79 4-26 (272)
333 3j16_B RLI1P; ribosome recycli 86.2 0.34 1.2E-05 48.7 2.8 24 58-81 105-128 (608)
334 2g3y_A GTP-binding protein GEM 86.2 0.51 1.7E-05 40.4 3.5 25 54-78 35-59 (211)
335 3a1s_A Iron(II) transport prot 86.1 0.5 1.7E-05 41.7 3.5 24 56-79 5-28 (258)
336 2dby_A GTP-binding protein; GD 86.1 0.4 1.4E-05 45.2 3.1 21 59-79 4-24 (368)
337 2dpy_A FLII, flagellum-specifi 85.9 0.41 1.4E-05 46.1 3.1 39 38-81 144-182 (438)
338 2yl4_A ATP-binding cassette SU 85.9 0.3 1E-05 48.3 2.2 23 58-80 372-394 (595)
339 2obl_A ESCN; ATPase, hydrolase 85.7 0.43 1.5E-05 44.5 3.1 44 33-81 53-96 (347)
340 1aky_A Adenylate kinase; ATP:A 85.7 0.52 1.8E-05 39.7 3.3 24 57-80 5-28 (220)
341 3b60_A Lipid A export ATP-bind 85.7 0.31 1E-05 48.1 2.1 24 58-81 371-394 (582)
342 1njg_A DNA polymerase III subu 85.6 0.55 1.9E-05 38.2 3.3 25 58-82 47-71 (250)
343 3euj_A Chromosome partition pr 85.5 0.44 1.5E-05 46.8 3.1 26 57-82 30-55 (483)
344 3qf4_B Uncharacterized ABC tra 85.4 0.34 1.2E-05 48.1 2.3 24 57-80 382-405 (598)
345 1iy2_A ATP-dependent metallopr 85.3 0.49 1.7E-05 41.5 3.1 22 59-80 76-97 (278)
346 2qby_A CDC6 homolog 1, cell di 85.3 0.55 1.9E-05 41.8 3.5 29 54-82 43-71 (386)
347 4eaq_A DTMP kinase, thymidylat 85.2 0.55 1.9E-05 40.7 3.3 25 57-81 27-51 (229)
348 1sxj_C Activator 1 40 kDa subu 85.1 0.39 1.3E-05 43.4 2.4 43 38-82 30-72 (340)
349 2j69_A Bacterial dynamin-like 85.1 0.38 1.3E-05 48.9 2.6 24 56-79 69-92 (695)
350 2dr3_A UPF0273 protein PH0284; 84.9 0.56 1.9E-05 39.4 3.2 23 58-80 25-47 (247)
351 3th5_A RAS-related C3 botulinu 85.1 0.18 6.2E-06 41.5 0.0 27 53-79 27-53 (204)
352 1zun_B Sulfate adenylate trans 84.8 0.7 2.4E-05 43.8 4.1 37 41-79 11-47 (434)
353 3bk7_A ABC transporter ATP-bin 84.7 0.38 1.3E-05 48.3 2.3 24 57-80 118-141 (607)
354 4fcw_A Chaperone protein CLPB; 84.7 0.58 2E-05 41.0 3.3 30 53-82 44-73 (311)
355 1yqt_A RNAse L inhibitor; ATP- 84.7 0.45 1.5E-05 46.9 2.8 24 57-80 313-336 (538)
356 1pzn_A RAD51, DNA repair and r 84.7 0.56 1.9E-05 43.4 3.3 41 37-80 115-155 (349)
357 1zak_A Adenylate kinase; ATP:A 84.7 0.47 1.6E-05 40.0 2.6 24 58-81 7-30 (222)
358 1in4_A RUVB, holliday junction 84.7 0.4 1.4E-05 43.6 2.3 29 54-82 49-77 (334)
359 3bk7_A ABC transporter ATP-bin 84.5 0.46 1.6E-05 47.6 2.8 23 58-80 384-406 (607)
360 2x8a_A Nuclear valosin-contain 84.5 0.55 1.9E-05 41.8 3.1 23 59-81 47-69 (274)
361 3a4m_A L-seryl-tRNA(SEC) kinas 84.5 0.67 2.3E-05 40.6 3.6 25 57-81 5-29 (260)
362 1jal_A YCHF protein; nucleotid 84.4 0.5 1.7E-05 44.7 2.9 22 58-79 4-25 (363)
363 2j37_W Signal recognition part 84.4 0.64 2.2E-05 45.8 3.7 28 54-81 99-126 (504)
364 3ozx_A RNAse L inhibitor; ATP 84.3 0.41 1.4E-05 47.3 2.3 23 58-80 296-318 (538)
365 2f6r_A COA synthase, bifunctio 84.3 0.49 1.7E-05 42.3 2.6 23 56-78 75-97 (281)
366 2xb4_A Adenylate kinase; ATP-b 84.1 0.67 2.3E-05 39.5 3.3 23 58-80 2-24 (223)
367 3geh_A MNME, tRNA modification 84.1 0.51 1.7E-05 45.7 2.8 22 58-79 226-247 (462)
368 2h92_A Cytidylate kinase; ross 84.0 0.55 1.9E-05 39.2 2.7 23 58-80 5-27 (219)
369 3nwj_A ATSK2; P loop, shikimat 83.8 0.55 1.9E-05 41.8 2.7 23 58-80 50-72 (250)
370 1e4v_A Adenylate kinase; trans 83.8 0.67 2.3E-05 38.9 3.2 23 58-80 2-24 (214)
371 2px0_A Flagellar biosynthesis 83.7 0.64 2.2E-05 42.2 3.2 25 57-81 106-130 (296)
372 2w58_A DNAI, primosome compone 83.6 0.69 2.4E-05 38.1 3.1 24 58-81 56-79 (202)
373 3be4_A Adenylate kinase; malar 83.5 0.7 2.4E-05 39.1 3.2 23 58-80 7-29 (217)
374 3j16_B RLI1P; ribosome recycli 83.5 0.54 1.9E-05 47.2 2.8 25 57-81 379-403 (608)
375 1vma_A Cell division protein F 83.4 0.8 2.7E-05 42.0 3.7 28 54-81 102-129 (306)
376 1mky_A Probable GTP-binding pr 83.4 0.54 1.8E-05 44.6 2.6 22 58-79 3-24 (439)
377 2fna_A Conserved hypothetical 83.2 0.7 2.4E-05 40.6 3.2 36 39-80 19-54 (357)
378 2ocp_A DGK, deoxyguanosine kin 83.1 0.69 2.4E-05 39.7 3.0 25 57-81 3-27 (241)
379 1fnn_A CDC6P, cell division co 83.0 0.78 2.7E-05 41.1 3.4 25 58-82 46-70 (389)
380 4dcu_A GTP-binding protein ENG 82.9 0.62 2.1E-05 44.4 2.9 24 56-79 23-46 (456)
381 3qf4_A ABC transporter, ATP-bi 82.9 0.37 1.2E-05 47.8 1.3 24 58-81 371-394 (587)
382 3c5h_A Glucocorticoid receptor 82.9 0.53 1.8E-05 41.1 2.2 26 53-78 16-50 (255)
383 4a82_A Cystic fibrosis transme 82.8 0.31 1.1E-05 48.1 0.8 24 58-81 369-392 (578)
384 1wxq_A GTP-binding protein; st 82.8 0.51 1.7E-05 44.8 2.2 21 59-79 3-23 (397)
385 3tlx_A Adenylate kinase 2; str 82.7 0.81 2.8E-05 39.7 3.3 24 57-80 30-53 (243)
386 2ohf_A Protein OLA1, GTP-bindi 82.7 0.55 1.9E-05 45.0 2.4 22 58-79 24-45 (396)
387 1svm_A Large T antigen; AAA+ f 82.6 0.72 2.5E-05 43.6 3.1 24 57-80 170-193 (377)
388 3d3q_A TRNA delta(2)-isopenten 82.6 0.77 2.6E-05 43.1 3.3 26 57-82 8-33 (340)
389 2qen_A Walker-type ATPase; unk 82.5 0.8 2.7E-05 40.2 3.3 23 57-79 32-54 (350)
390 2hjg_A GTP-binding protein ENG 82.5 0.65 2.2E-05 44.0 2.8 23 57-79 4-26 (436)
391 3l0i_B RAS-related protein RAB 82.3 0.36 1.2E-05 39.6 0.9 25 54-78 31-55 (199)
392 4ag6_A VIRB4 ATPase, type IV s 82.3 0.76 2.6E-05 42.5 3.1 24 59-82 38-61 (392)
393 3cnl_A YLQF, putative uncharac 82.2 0.62 2.1E-05 41.5 2.4 22 58-79 101-122 (262)
394 2dyk_A GTP-binding protein; GT 82.1 1.9 6.5E-05 33.2 5.0 19 133-151 6-24 (161)
395 1ak2_A Adenylate kinase isoenz 81.9 0.92 3.1E-05 38.7 3.3 23 58-80 18-40 (233)
396 3ec1_A YQEH GTPase; atnos1, at 81.9 0.77 2.6E-05 42.9 3.0 22 59-80 165-186 (369)
397 3r7w_A Gtpase1, GTP-binding pr 81.8 0.72 2.5E-05 41.6 2.7 22 58-79 5-26 (307)
398 1lnz_A SPO0B-associated GTP-bi 81.8 0.37 1.3E-05 44.8 0.8 23 56-78 158-180 (342)
399 3ux8_A Excinuclease ABC, A sub 81.6 0.45 1.6E-05 47.7 1.4 20 58-77 350-369 (670)
400 1lv7_A FTSH; alpha/beta domain 81.4 0.89 3E-05 39.1 3.1 23 59-81 48-70 (257)
401 1svi_A GTP-binding protein YSX 81.3 3.2 0.00011 33.2 6.2 19 133-151 28-46 (195)
402 3fdi_A Uncharacterized protein 81.2 0.94 3.2E-05 38.5 3.1 24 58-81 8-31 (201)
403 1zu4_A FTSY; GTPase, signal re 81.2 1.8 6.1E-05 39.8 5.2 29 54-82 103-131 (320)
404 1l8q_A Chromosomal replication 81.1 0.74 2.5E-05 41.1 2.5 26 56-81 37-62 (324)
405 1tf7_A KAIC; homohexamer, hexa 81.1 0.77 2.6E-05 44.6 2.8 36 38-76 24-59 (525)
406 2v3c_C SRP54, signal recogniti 80.4 0.84 2.9E-05 43.9 2.8 28 54-81 97-124 (432)
407 1f2t_A RAD50 ABC-ATPase; DNA d 80.3 1.1 3.6E-05 36.3 3.0 23 58-80 25-47 (149)
408 3lda_A DNA repair protein RAD5 80.2 0.87 3E-05 43.4 2.8 41 36-79 161-201 (400)
409 1ltq_A Polynucleotide kinase; 80.1 1.1 3.6E-05 39.5 3.1 23 57-79 3-25 (301)
410 2hjg_A GTP-binding protein ENG 80.0 0.83 2.8E-05 43.2 2.6 24 56-79 175-198 (436)
411 2wkq_A NPH1-1, RAS-related C3 79.8 0.94 3.2E-05 39.8 2.7 23 57-79 156-178 (332)
412 3gee_A MNME, tRNA modification 79.7 0.54 1.8E-05 45.7 1.2 21 59-79 236-256 (476)
413 3h2y_A GTPase family protein; 79.7 0.94 3.2E-05 42.3 2.8 22 59-80 163-184 (368)
414 2chq_A Replication factor C sm 79.7 1.7 5.7E-05 37.8 4.3 46 35-82 19-64 (319)
415 1p5z_B DCK, deoxycytidine kina 79.6 0.52 1.8E-05 41.1 0.9 28 54-81 22-49 (263)
416 1kk1_A EIF2gamma; initiation o 79.3 1.5 5E-05 41.1 4.0 27 52-78 6-32 (410)
417 3exa_A TRNA delta(2)-isopenten 79.2 1.2 4E-05 41.8 3.2 25 58-82 5-29 (322)
418 1jwy_B Dynamin A GTPase domain 79.1 1 3.6E-05 39.7 2.8 19 133-151 29-47 (315)
419 3cr8_A Sulfate adenylyltranfer 78.9 0.87 3E-05 45.3 2.4 25 57-81 370-394 (552)
420 3mca_A HBS1, elongation factor 78.6 1.5 5.3E-05 43.6 4.1 27 53-79 174-200 (592)
421 1xzp_A Probable tRNA modificat 78.5 0.71 2.4E-05 45.0 1.6 23 57-79 244-266 (482)
422 2c78_A Elongation factor TU-A; 78.4 1.5 5E-05 41.0 3.7 27 53-79 8-34 (405)
423 2x2e_A Dynamin-1; nitration, h 78.3 2.3 7.9E-05 38.9 5.0 19 133-151 36-54 (353)
424 1jny_A EF-1-alpha, elongation 78.2 1.4 4.9E-05 41.7 3.6 27 53-79 3-29 (435)
425 3foz_A TRNA delta(2)-isopenten 78.1 1.3 4.6E-05 41.2 3.3 31 58-88 12-42 (316)
426 3ch4_B Pmkase, phosphomevalona 78.0 1.3 4.5E-05 38.7 3.0 28 53-80 8-35 (202)
427 1qhl_A Protein (cell division 77.9 0.23 7.7E-06 43.8 -1.9 25 58-82 29-53 (227)
428 3hr8_A Protein RECA; alpha and 77.8 1.4 4.8E-05 41.4 3.4 45 34-81 41-86 (356)
429 3qf7_A RAD50; ABC-ATPase, ATPa 77.7 1.2 4E-05 41.5 2.8 25 58-82 25-49 (365)
430 1tf7_A KAIC; homohexamer, hexa 77.6 1.2 4.1E-05 43.2 3.0 24 57-80 282-305 (525)
431 3p26_A Elongation factor 1 alp 77.5 1.6 5.4E-05 42.0 3.7 27 53-79 30-56 (483)
432 3kl4_A SRP54, signal recogniti 77.4 1.4 4.8E-05 42.5 3.3 28 55-82 96-123 (433)
433 1f60_A Elongation factor EEF1A 77.3 1.8 6.2E-05 41.5 4.1 27 53-79 4-30 (458)
434 2v1u_A Cell division control p 77.1 1.3 4.5E-05 39.4 2.9 28 55-82 43-70 (387)
435 2iw3_A Elongation factor 3A; a 77.1 1.2 4.1E-05 47.4 3.0 21 58-78 463-483 (986)
436 3t34_A Dynamin-related protein 77.0 3.3 0.00011 37.8 5.6 19 133-151 39-57 (360)
437 2aka_B Dynamin-1; fusion prote 76.9 4.2 0.00014 35.3 6.1 19 133-151 31-49 (299)
438 4f4c_A Multidrug resistance pr 76.8 0.88 3E-05 49.5 1.9 23 58-80 1107-1129(1321)
439 1j8m_F SRP54, signal recogniti 76.8 1.7 5.9E-05 39.4 3.6 26 56-81 98-123 (297)
440 4edh_A DTMP kinase, thymidylat 76.6 1.9 6.6E-05 37.1 3.7 26 57-82 7-32 (213)
441 4aby_A DNA repair protein RECN 76.6 0.64 2.2E-05 43.0 0.6 22 58-79 62-83 (415)
442 3sjy_A Translation initiation 76.5 1.2 4.2E-05 41.6 2.6 27 53-79 5-31 (403)
443 3eph_A TRNA isopentenyltransfe 76.4 1.6 5.3E-05 42.2 3.3 30 58-87 4-33 (409)
444 2qgz_A Helicase loader, putati 76.4 1.5 5.2E-05 39.7 3.1 25 57-81 153-177 (308)
445 4f4c_A Multidrug resistance pr 76.4 0.99 3.4E-05 49.1 2.1 24 58-81 446-469 (1321)
446 3qks_A DNA double-strand break 76.1 1.5 5.1E-05 37.2 2.8 25 57-81 24-48 (203)
447 1g16_A RAS-related protein SEC 76.1 2.8 9.6E-05 32.4 4.2 19 133-151 8-26 (170)
448 1sxj_D Activator 1 41 kDa subu 76.1 0.92 3.1E-05 40.3 1.5 24 59-82 61-84 (353)
449 2erx_A GTP-binding protein DI- 76.1 3.7 0.00013 31.6 5.0 18 133-150 8-25 (172)
450 2gco_A H9, RHO-related GTP-bin 75.4 6.7 0.00023 31.9 6.6 28 119-151 21-48 (201)
451 1e9r_A Conjugal transfer prote 75.3 1.8 6.3E-05 40.3 3.4 24 59-82 56-79 (437)
452 2iw3_A Elongation factor 3A; a 75.3 0.82 2.8E-05 48.7 1.1 23 58-80 701-723 (986)
453 3tr5_A RF-3, peptide chain rel 75.2 1.6 5.6E-05 42.9 3.2 25 55-79 12-36 (528)
454 1s0u_A EIF-2-gamma, translatio 75.2 1.7 5.6E-05 40.8 3.1 26 53-78 5-30 (408)
455 3o47_A ADP-ribosylation factor 75.2 1.1 3.8E-05 40.8 1.9 21 58-78 167-187 (329)
456 2ce2_X GTPase HRAS; signaling 75.2 4.9 0.00017 30.5 5.4 19 133-151 8-26 (166)
457 3crm_A TRNA delta(2)-isopenten 74.9 1.8 6E-05 40.3 3.2 26 58-83 7-32 (323)
458 3b9p_A CG5977-PA, isoform A; A 74.9 1.8 6.2E-05 37.8 3.1 27 56-82 54-80 (297)
459 1u8z_A RAS-related protein RAL 74.8 5.5 0.00019 30.4 5.6 19 133-151 9-27 (168)
460 1d2e_A Elongation factor TU (E 74.8 2.2 7.5E-05 39.8 3.8 26 55-80 2-27 (397)
461 3zvr_A Dynamin-1; hydrolase, D 74.8 1.2 4.1E-05 46.2 2.2 25 55-79 50-74 (772)
462 2qz4_A Paraplegin; AAA+, SPG7, 74.8 1.9 6.4E-05 36.6 3.1 23 59-81 42-64 (262)
463 3zvr_A Dynamin-1; hydrolase, D 74.7 1.6 5.6E-05 45.2 3.2 19 133-151 56-74 (772)
464 1ky3_A GTP-binding protein YPT 74.6 3.1 0.00011 32.5 4.2 19 133-151 13-31 (182)
465 3g5u_A MCG1178, multidrug resi 74.5 1.1 3.7E-05 48.7 1.8 23 58-80 418-440 (1284)
466 1dek_A Deoxynucleoside monopho 74.5 1.9 6.4E-05 38.3 3.1 23 57-79 2-24 (241)
467 2orw_A Thymidine kinase; TMTK, 74.5 2 6.9E-05 35.9 3.2 23 58-80 5-27 (184)
468 3v9p_A DTMP kinase, thymidylat 74.4 1.8 6.3E-05 37.9 3.0 26 57-82 26-51 (227)
469 1w1w_A Structural maintenance 74.4 1.7 5.8E-05 40.8 3.0 23 58-80 28-50 (430)
470 3h4m_A Proteasome-activating n 74.3 1.9 6.6E-05 37.3 3.1 25 58-82 53-77 (285)
471 3j2k_7 ERF3, eukaryotic polype 74.1 2.1 7.1E-05 40.8 3.5 27 53-79 14-40 (439)
472 3zvl_A Bifunctional polynucleo 74.1 1.6 5.5E-05 41.2 2.7 25 56-80 258-282 (416)
473 2dy1_A Elongation factor G; tr 74.0 2.1 7E-05 43.2 3.6 27 54-80 7-33 (665)
474 3a8t_A Adenylate isopentenyltr 74.0 1.6 5.6E-05 40.9 2.7 31 58-88 42-72 (339)
475 3dpu_A RAB family protein; roc 74.0 1.6 5.6E-05 42.3 2.8 26 54-79 39-64 (535)
476 3hdt_A Putative kinase; struct 73.8 2 7E-05 37.4 3.1 26 57-82 15-40 (223)
477 4dsu_A GTPase KRAS, isoform 2B 73.8 5.4 0.00018 31.4 5.4 19 133-151 9-27 (189)
478 3ld9_A DTMP kinase, thymidylat 73.7 2.4 8.4E-05 37.1 3.7 28 55-82 20-47 (223)
479 3dm5_A SRP54, signal recogniti 73.7 2.2 7.4E-05 41.5 3.6 27 56-82 100-126 (443)
480 1e69_A Chromosome segregation 73.6 1.7 5.8E-05 39.3 2.7 21 58-78 26-46 (322)
481 4hlc_A DTMP kinase, thymidylat 73.5 2.5 8.4E-05 36.1 3.6 25 57-81 3-27 (205)
482 1tue_A Replication protein E1; 73.4 2 6.7E-05 38.0 2.9 41 39-83 45-85 (212)
483 2qby_B CDC6 homolog 3, cell di 73.4 2.1 7E-05 38.5 3.2 27 56-82 45-71 (384)
484 1iqp_A RFCS; clamp loader, ext 73.4 1.6 5.4E-05 38.1 2.3 43 38-82 30-72 (327)
485 3lv8_A DTMP kinase, thymidylat 73.4 2.1 7.2E-05 37.7 3.1 26 57-82 28-53 (236)
486 3t1o_A Gliding protein MGLA; G 73.3 4.6 0.00016 31.9 5.0 67 133-217 19-85 (198)
487 1ls1_A Signal recognition part 73.2 2.2 7.5E-05 38.5 3.3 26 56-81 98-123 (295)
488 4tmk_A Protein (thymidylate ki 73.1 2.2 7.6E-05 36.8 3.2 25 58-82 5-29 (213)
489 3lvq_E ARF-GAP with SH3 domain 73.1 1.8 6.3E-05 41.1 2.9 24 56-79 322-345 (497)
490 3cf0_A Transitional endoplasmi 73.1 2.1 7.2E-05 38.1 3.1 26 56-81 49-74 (301)
491 1sxj_B Activator 1 37 kDa subu 72.1 1.5 5.2E-05 38.2 1.9 24 59-82 45-68 (323)
492 2bov_A RAla, RAS-related prote 72.0 6.5 0.00022 31.5 5.6 19 133-151 19-37 (206)
493 1ofh_A ATP-dependent HSL prote 71.8 2.4 8.1E-05 36.7 3.1 24 59-82 53-76 (310)
494 3g5u_A MCG1178, multidrug resi 71.8 1.6 5.4E-05 47.4 2.3 24 58-81 1061-1084(1284)
495 2r62_A Cell division protease 71.6 1.7 5.9E-05 37.3 2.1 24 59-82 47-70 (268)
496 1c1y_A RAS-related protein RAP 71.5 8.7 0.0003 29.4 6.1 19 133-151 8-26 (167)
497 3qkt_A DNA double-strand break 71.4 2.3 7.8E-05 38.8 3.0 25 57-81 24-48 (339)
498 3izq_1 HBS1P, elongation facto 71.1 1.9 6.4E-05 43.2 2.5 27 53-79 164-190 (611)
499 3ux8_A Excinuclease ABC, A sub 70.7 1.8 6.1E-05 43.3 2.3 16 58-73 46-61 (670)
500 3hjn_A DTMP kinase, thymidylat 70.6 3 0.0001 35.2 3.4 25 58-82 2-26 (197)
No 1
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=100.00 E-value=7.5e-51 Score=398.49 Aligned_cols=190 Identities=65% Similarity=1.036 Sum_probs=172.2
Q ss_pred cccCCCCCeeEEEEeCCCceEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhhcccccCCCCCCC
Q psy5031 15 EDSLPQYGAIQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWM 94 (281)
Q Consensus 15 ~~~~~~~~pvqLV~~~~~~~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~ 94 (281)
++...+++|+|||+++++++|.||+|||+.||+++.++++||+||||+|++|||||||||+|++++.+.
T Consensus 26 ~~~~~~~~pvqlV~~~~~~~l~ln~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~----------- 94 (457)
T 4ido_A 26 EEPVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQ----------- 94 (457)
T ss_dssp -----CCCEEEEEEECTTSCEEECHHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHHHHHCT-----------
T ss_pred ccccCCCCceeEEEECCCCCEEECHHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHHHhhcc-----------
Confidence 445778999999999888999999999999887666678999999999999999999999999986542
Q ss_pred CCCCCCCCCcccCCCCcccccceeeeeceEEeecCCcccchhhccCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCC
Q psy5031 95 GPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLE 174 (281)
Q Consensus 95 ~~~~~~~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~~~~~~r~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (281)
+..+|+++.+.+..
T Consensus 95 ------------------------------------------------------------------~~~~w~~~~~~~~~ 108 (457)
T 4ido_A 95 ------------------------------------------------------------------ESVDWVGDYNEPLT 108 (457)
T ss_dssp ------------------------------------------------------------------TCTTTTCCTTCCCC
T ss_pred ------------------------------------------------------------------cccccccccccCCC
Confidence 12467777777789
Q ss_pred CcccCCCCCCcccceEeeecceeecCCCCCceEEEEEecCCCCCCCcCcccchhhHHHHHhhhhhhhhccCCCCChhhhh
Q psy5031 175 GFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQ 254 (281)
Q Consensus 175 gF~~~~~~~~~TkGIWmWs~P~~~~~~~g~~v~VlLlDTEG~~d~~~s~~~d~~IFaLs~LLSS~~IYNs~~~Ide~~L~ 254 (281)
||+|++++++||+|||||++|+.+..++|++++|+||||||++|.+++.++|++||+|++||||++|||++++|++++|+
T Consensus 109 gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~i~~~~L~ 188 (457)
T 4ido_A 109 GFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQ 188 (457)
T ss_dssp SSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESSCCHHHHH
T ss_pred CceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEeccCCCCcccCccccHHHHHHHHHHhhheeecccccCCHHHHH
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhhccCCCCCcccccC
Q psy5031 255 HLQLFTEYGRLALADTGTKPFQRLQFL 281 (281)
Q Consensus 255 ~L~l~t~~a~~i~~~~~~~pfq~L~fl 281 (281)
+|++|++||++|+++....|||+|.||
T Consensus 189 ~L~~~tel~~~i~~~~~~~~Fp~f~wl 215 (457)
T 4ido_A 189 HLQLFTEYGRLAMEETFLKPFQSLIFL 215 (457)
T ss_dssp HHHHHHHHHHHHSCCCSSCSEEEEEEE
T ss_pred HHHHHHHHHHHHhhhcccccCCceEEE
Confidence 999999999999999999999999875
No 2
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=100.00 E-value=4.2e-46 Score=364.21 Aligned_cols=189 Identities=65% Similarity=1.035 Sum_probs=173.0
Q ss_pred ccCCCCCeeEEEEeCCCceEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhhcccccCCCCCCCC
Q psy5031 16 DSLPQYGAIQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMG 95 (281)
Q Consensus 16 ~~~~~~~pvqLV~~~~~~~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~ 95 (281)
+....++|+|||.++++|+|++|+|||+.||.++.+.++||+||||+|++|+|||||||+|++++++.
T Consensus 27 ~~~~~~~piqlv~~~~~~~l~v~~eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~~~~~------------ 94 (447)
T 3q5d_A 27 EPVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQ------------ 94 (447)
T ss_dssp --CCCCCEEEEEEECTTSCEEECHHHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHHHHCC------------
T ss_pred ccccCCCceeEEEECCCCCEEECHHHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhhcccc------------
Confidence 45668999999999889999999999988888666679999999999999999999999999986541
Q ss_pred CCCCCCCCcccCCCCcccccceeeeeceEEeecCCcccchhhccCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCCC
Q psy5031 96 PDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEG 175 (281)
Q Consensus 96 ~~~~~~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~~~~~~r~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~g 175 (281)
+..+|++++.....+
T Consensus 95 -----------------------------------------------------------------~~~~wl~~~~~~~~~ 109 (447)
T 3q5d_A 95 -----------------------------------------------------------------ESVDWVGDYNEPLTG 109 (447)
T ss_dssp -----------------------------------------------------------------STTTSSCCTTSBCCS
T ss_pred -----------------------------------------------------------------cccccccccccccce
Confidence 235677776677899
Q ss_pred cccCCCCCCcccceEeeecceeecCCCCCceEEEEEecCCCCCCCcCcccchhhHHHHHhhhhhhhhccCCCCChhhhhH
Q psy5031 176 FSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 255 (281)
Q Consensus 176 F~~~~~~~~~TkGIWmWs~P~~~~~~~g~~v~VlLlDTEG~~d~~~s~~~d~~IFaLs~LLSS~~IYNs~~~Ide~~L~~ 255 (281)
|+|++++++||+|||||++|+.+..++|++++|+||||||+.+.+++.++|++||+|++||||++|||+++.|+++++++
T Consensus 110 f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTeG~~~~~~~~~~d~~ifal~~lLSs~~IyN~~~~i~~~~l~~ 189 (447)
T 3q5d_A 110 FSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189 (447)
T ss_dssp SCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHCSEEEEEESSSCCHHHHHH
T ss_pred ecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcCCcccccccchhhhHHHHHHHHHHhhHHHHhhcccccHHHHHH
Confidence 99999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccCCCCCcccccC
Q psy5031 256 LQLFTEYGRLALADTGTKPFQRLQFL 281 (281)
Q Consensus 256 L~l~t~~a~~i~~~~~~~pfq~L~fl 281 (281)
|++|++++++++++...+|||+|.||
T Consensus 190 L~~~~e~~~~~~~~~~~~~fp~l~wv 215 (447)
T 3q5d_A 190 LQLFTEYGRLAMEETFLKPFQSLIFL 215 (447)
T ss_dssp HHHHHHHHHHTSCCCSSCSEEEEEEE
T ss_pred HHHHHHHHHHHHHhhcccCCCceEEE
Confidence 99999999999888889999999985
No 3
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.93 E-value=3.8e-26 Score=229.92 Aligned_cols=161 Identities=26% Similarity=0.400 Sum_probs=135.6
Q ss_pred CCCCeeEEEEeCCCceEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhhcccccCCCCCCCCCCC
Q psy5031 19 PQYGAIQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDD 98 (281)
Q Consensus 19 ~~~~pvqLV~~~~~~~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~~~~~~~~~~~ 98 (281)
.-++|++||..+ ++.|.+|++|++.+.. .+.|+.+|+|+|++++|||+|+|+|++.
T Consensus 6 ~m~~pv~li~~~-~~~l~~~~eal~~L~~----i~~~~~~VaivG~pnvGKStLiN~L~g~------------------- 61 (592)
T 1f5n_A 6 HMTGPMCLIENT-NGRLMANPEALKILSA----ITQPMVVVAIVGLYRTGKSYLMNKLAGK------------------- 61 (592)
T ss_dssp -CCSCEEEEEEE-TTEEEECHHHHHHHHT----CCSBEEEEEEEEBTTSSHHHHHHHHTTC-------------------
T ss_pred CCCCCeEEEEeC-CCcEEECHHHHHHHHh----ccCCCcEEEEECCCCCCHHHHHHhHcCC-------------------
Confidence 357899999976 7999999999995442 3789999999999999999999999421
Q ss_pred CCCCCcccCCCCcccccceeeeeceEEeecCCcccchhhccCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCCCccc
Q psy5031 99 VPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSW 178 (281)
Q Consensus 99 ~~~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~~~~~~r~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~ 178 (281)
..+|.+
T Consensus 62 --------------------------------------------------------------------------~~~~~~ 67 (592)
T 1f5n_A 62 --------------------------------------------------------------------------KKGFSL 67 (592)
T ss_dssp --------------------------------------------------------------------------SSCSCC
T ss_pred --------------------------------------------------------------------------CCcccc
Confidence 134677
Q ss_pred CCCCCCcccceEeeecceeecCCCCCceEEEEEecCCCCCCCc-CcccchhhHHHHHhhhhhhhhccCCCCChhhhhHhH
Q psy5031 179 RGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSES-TVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQ 257 (281)
Q Consensus 179 ~~~~~~~TkGIWmWs~P~~~~~~~g~~v~VlLlDTEG~~d~~~-s~~~d~~IFaLs~LLSS~~IYNs~~~Ide~~L~~L~ 257 (281)
++++.+||+|||+|+.|+. .+....++|+||+|+.+... +..+++.+|+|++++||++|||+.+.|++++++.|+
T Consensus 68 ~~tt~~~T~gi~~~~~~~~----~~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~ 143 (592)
T 1f5n_A 68 GSTVQSHTKGIWMWCVPHP----KKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLY 143 (592)
T ss_dssp CCSSSCCCCSEEEEEEECS----SSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTH
T ss_pred CCCCCCceeEEEEeecccc----cCCCceEEEecCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHH
Confidence 7888899999999998873 33456799999999998876 667899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccC--------------CCCCcccccC
Q psy5031 258 LFTEYGRLALADTG--------------TKPFQRLQFL 281 (281)
Q Consensus 258 l~t~~a~~i~~~~~--------------~~pfq~L~fl 281 (281)
+++++++.+....+ ..+|++|.||
T Consensus 144 ~v~e~~~~l~~k~~~~~~~~~~~~~~~~~~~fP~~~wv 181 (592)
T 1f5n_A 144 YVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWT 181 (592)
T ss_dssp HHHTHHHHCBSCCC-------CCGGGGHHHHCCEEEEE
T ss_pred HHHHHhhhhhcccCcccccccccchhhhhccCCceEEE
Confidence 99999998865433 2468998875
No 4
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=98.09 E-value=2.1e-06 Score=84.23 Aligned_cols=42 Identities=57% Similarity=1.244 Sum_probs=36.5
Q ss_pred CCCCCCCCCCCCcccCCCCcccccceeeeeceEEeecCCccc
Q psy5031 92 DWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEK 133 (281)
Q Consensus 92 ~~~~~~~~~~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~~ 133 (281)
+|.+..+.+..+|+|+++++|||+|||||++|+.++.++|+.
T Consensus 98 ~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~ 139 (457)
T 4ido_A 98 DWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKK 139 (457)
T ss_dssp TTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCE
T ss_pred ccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCe
Confidence 477666677899999999999999999999999998888763
No 5
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.27 E-value=0.00017 Score=70.42 Aligned_cols=41 Identities=56% Similarity=1.249 Sum_probs=35.0
Q ss_pred CCCCCCCCCCCCcccCCCCcccccceeeeeceEEeecCCcc
Q psy5031 92 DWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGE 132 (281)
Q Consensus 92 ~~~~~~~~~~~~f~~~~~~e~~t~gi~~~s~~~~~~~~~~~ 132 (281)
+|.+....+..+|+|+++++++|+|||||+.|+.++.++|+
T Consensus 98 ~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~ 138 (447)
T 3q5d_A 98 DWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGK 138 (447)
T ss_dssp TSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSC
T ss_pred ccccccccccceecCCCCCCCceeEEEEecCccccccCCCC
Confidence 46666555788999999999999999999999888877776
No 6
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.22 E-value=0.00084 Score=59.16 Aligned_cols=24 Identities=21% Similarity=0.110 Sum_probs=20.2
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
---|+++|..++|||+|+|.|++.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 345789999999999999999753
No 7
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.00 E-value=0.0032 Score=54.90 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=21.1
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+..-|+|+|..++|||+|+|+|+.+
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4456889999999999999999754
No 8
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.90 E-value=0.0047 Score=56.24 Aligned_cols=27 Identities=37% Similarity=0.363 Sum_probs=24.1
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.-|-..|+|+|...+|||+|+|+|+..
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 458899999999999999999999743
No 9
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.88 E-value=0.0037 Score=53.94 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=21.6
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+.--|+++|+.++|||+|+|.|++.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 34567899999999999999999754
No 10
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.64 E-value=0.0058 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=19.5
Q ss_pred EEEEEEecccccChhHHHHHHHH
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
.-.|.|+|..++|||+|+|+|++
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 44677899999999999999964
No 11
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.22 E-value=0.013 Score=53.48 Aligned_cols=25 Identities=36% Similarity=0.336 Sum_probs=21.7
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+...|+|+|...+|||+|+|+|++.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999754
No 12
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.19 E-value=0.013 Score=46.02 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=19.3
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|.|+|+.++|||+|+|+|+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999999999999999754
No 13
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.09 E-value=0.0078 Score=53.43 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.4
Q ss_pred EEEEEecccccChhHHHHHHH
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLL 77 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll 77 (281)
.-|+|+|..++|||+|+|.|+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 447799999999999999985
No 14
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.07 E-value=0.021 Score=46.07 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=19.5
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.-|.|+|+.++|||+|+|+|+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45778899999999999999754
No 15
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.05 E-value=0.015 Score=46.20 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=19.8
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.-|.|+|+.++|||+|+|+|+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45788899999999999999743
No 16
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.01 E-value=0.019 Score=45.20 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=21.0
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+-.-|.|+|+.++|||+|+|+|+..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999999754
No 17
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.00 E-value=0.024 Score=45.09 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=22.6
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..+..-|.|+|+.++|||+|+|+|+..
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcC
Confidence 345667899999999999999999754
No 18
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.98 E-value=0.014 Score=45.91 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=19.8
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.-|.|+|+.++|||+|+|+|+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 44679999999999999999754
No 19
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.95 E-value=0.023 Score=46.65 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.2
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+..-|.|+|+.++|||+|+|+|++.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 45677899999999999999999764
No 20
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.93 E-value=0.02 Score=44.87 Aligned_cols=25 Identities=20% Similarity=0.119 Sum_probs=21.0
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+-.-|.|+|+.++|||+|+|+|+..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3456789999999999999999754
No 21
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.93 E-value=0.019 Score=45.37 Aligned_cols=25 Identities=20% Similarity=0.006 Sum_probs=21.2
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+-.-|.|+|+.++|||+|+|+|+..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999999754
No 22
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.91 E-value=0.03 Score=44.64 Aligned_cols=26 Identities=23% Similarity=0.126 Sum_probs=22.0
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+..-|.|+|+.++|||+|+|+|+..
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 45566899999999999999999754
No 23
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.84 E-value=0.016 Score=52.55 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.7
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+-.+|+|+|+..+|||+|+|+|+..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34568999999999999999999864
No 24
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.79 E-value=0.042 Score=46.67 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=19.9
Q ss_pred EEEEEEecccccChhHHHHHHHH
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
..-|.|+|+.++|||+|+|+|++
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45678999999999999999964
No 25
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.74 E-value=0.026 Score=46.07 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=22.3
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+..-|.|+|+.++|||+|+|+|+..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 45667899999999999999999754
No 26
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.69 E-value=0.029 Score=43.74 Aligned_cols=22 Identities=32% Similarity=0.141 Sum_probs=19.3
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|.|+|+.++|||+|+|+|+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999753
No 27
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.66 E-value=0.025 Score=45.47 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=20.2
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.-|.|+|+.++|||+|+|+|+..
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45779999999999999999865
No 28
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.63 E-value=0.035 Score=43.99 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.2
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+..-|.|+|+.++|||+|+|+|+..
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 35667889999999999999999754
No 29
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.58 E-value=0.042 Score=45.43 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=23.0
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.....|+|+|+.++|||+|+|+|.+.
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 35678999999999999999999765
No 30
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.57 E-value=0.034 Score=45.31 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=21.8
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..+..-|.|+|+.++|||+|+|+|+..
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcC
Confidence 345667899999999999999999754
No 31
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.53 E-value=0.034 Score=44.92 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=21.4
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+-.-|.|+|+.++|||.|+|+|+..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4567889999999999999999754
No 32
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.49 E-value=0.041 Score=48.54 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=22.3
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+.+-.-|.++|..++|||+|+|.|+..
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 344567889999999999999999743
No 33
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.43 E-value=0.055 Score=43.86 Aligned_cols=26 Identities=23% Similarity=0.126 Sum_probs=22.5
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+..-|.|+|+.++|||+|+|+|++.
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 45677899999999999999999754
No 34
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.41 E-value=0.022 Score=46.56 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=18.6
Q ss_pred EEEEecccccChhHHHHHHHH
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~ 78 (281)
-|+|+|+.++|||+|+|+|.+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999964
No 35
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.37 E-value=0.036 Score=44.54 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.4
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+..-|.|+|+.++|||+|+|+|+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4566789999999999999999754
No 36
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.37 E-value=0.048 Score=43.49 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=21.9
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+..-|.|+|+.++|||+|+|+|+..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 34566889999999999999999754
No 37
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.34 E-value=0.034 Score=44.14 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=21.3
Q ss_pred ceEEEEEEecccccChhHHHHHHHH
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
.+.--|.|+|+.++|||+|+|+|+.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3566789999999999999999953
No 38
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.32 E-value=0.041 Score=45.17 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.2
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+-.-|.|+|+.++|||+|+|+|+..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 4556889999999999999999754
No 39
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.32 E-value=0.039 Score=45.33 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=21.3
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+..-|.|+|+.++|||+|+|+|+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4566899999999999999999643
No 40
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.25 E-value=0.054 Score=44.77 Aligned_cols=25 Identities=32% Similarity=0.274 Sum_probs=21.9
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
....|+|+|+.++|||+|+|+|.+.
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 4567899999999999999999764
No 41
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.21 E-value=0.047 Score=43.33 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=21.2
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+..-|.|+|+.++|||+|+|+|++.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4456889999999999999999754
No 42
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.18 E-value=0.087 Score=42.81 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=22.4
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
....-|.|+|+.++|||+|+|+|++.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 45677899999999999999999754
No 43
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.14 E-value=0.021 Score=48.36 Aligned_cols=28 Identities=29% Similarity=0.261 Sum_probs=24.9
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+=.+|+|+|+.++|||+|++.|.+.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999998865
No 44
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.12 E-value=0.063 Score=42.98 Aligned_cols=26 Identities=15% Similarity=0.034 Sum_probs=21.8
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+..-|.|+|+.++|||+|+|+|+..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 34556789999999999999999754
No 45
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.10 E-value=0.042 Score=45.28 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=20.7
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..-|.|+|+.++|||+|+|+|+..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999753
No 46
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.04 E-value=0.065 Score=47.08 Aligned_cols=25 Identities=28% Similarity=0.212 Sum_probs=21.3
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+-.-|.|+|..++|||+|+|.|+..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999753
No 47
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.01 E-value=0.042 Score=45.36 Aligned_cols=25 Identities=24% Similarity=0.113 Sum_probs=21.3
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
...-|.|+|+.++|||+|+|+|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4556889999999999999999754
No 48
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.92 E-value=0.042 Score=43.50 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.1
Q ss_pred EEEEEEecccccChhHHHHHHHH
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
..-|.|+|+.++|||+|+|+|.+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 45688999999999999999964
No 49
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.88 E-value=0.032 Score=44.02 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=19.3
Q ss_pred EEEEEecccccChhHHHHHHHH
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
.-|.|+|+.++|||+|+|+|.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999964
No 50
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.85 E-value=0.097 Score=41.88 Aligned_cols=25 Identities=20% Similarity=0.096 Sum_probs=21.2
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+..-|.|+|+.++|||+|+|+|+..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 4556889999999999999999743
No 51
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.85 E-value=0.034 Score=45.73 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.1
Q ss_pred eEEEEEEecccccChhHHHHHHHH
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
+..-|.|+|+.++|||+|+|+|+.
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 345678999999999999999953
No 52
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.74 E-value=0.097 Score=43.93 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=22.0
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
....-|.|+|+.++|||+|+|+|+..
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhC
Confidence 34567889999999999999999754
No 53
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.71 E-value=0.12 Score=41.32 Aligned_cols=27 Identities=22% Similarity=0.105 Sum_probs=23.2
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+.+..-|.|+|+.++|||+|+|+|+..
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 556778899999999999999999754
No 54
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.66 E-value=0.033 Score=50.39 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=12.2
Q ss_pred EEEEEecCCCCCCCc
Q psy5031 207 AVILLDTQGTFDSES 221 (281)
Q Consensus 207 ~VlLlDTEG~~d~~~ 221 (281)
.+.|+||+|+.....
T Consensus 166 ~~~l~DtpG~~~~~~ 180 (282)
T 1puj_A 166 ELELLDTPGILWPKF 180 (282)
T ss_dssp TEEEEECCCCCCSCC
T ss_pred CEEEEECcCcCCCCC
Confidence 389999999987644
No 55
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.63 E-value=0.019 Score=48.17 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.0
Q ss_pred EEEEEEecccccChhHHHHHHHHhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
-.+|+|+|+.++|||+|++.|.+.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998754
No 56
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.63 E-value=0.052 Score=44.75 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=21.2
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..+..-|.|+|+.++|||+|+|+|+..
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 445667889999999999999999754
No 57
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.59 E-value=0.094 Score=42.79 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=22.7
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..+..-|.|+|+.++|||+|+|+|...
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 445667889999999999999999754
No 58
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.56 E-value=0.02 Score=47.45 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=21.0
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|+|+||.++|||+|++.|.+.+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 68999999999999999998763
No 59
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.39 E-value=0.023 Score=47.11 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.9
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+||.++|||+|++.|++.+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 78899999999999999998864
No 60
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.36 E-value=0.044 Score=45.46 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=20.6
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+..-|.|+|+.++|||+|+|+|+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4556789999999999999999743
No 61
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.07 E-value=0.029 Score=47.44 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.0
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+||.++|||+|++.|++.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68899999999999999998864
No 62
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.99 E-value=0.032 Score=48.51 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.9
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+|+|.|+.++|||+|++.|.+.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998764
No 63
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.84 E-value=0.035 Score=51.59 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=25.5
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+..+|+|+|+.++|||+|+|.|++.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 45889999999999999999999987543
No 64
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.79 E-value=0.029 Score=46.62 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.3
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+||.++|||+|++.|++.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 578999999999999999998653
No 65
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.77 E-value=0.029 Score=47.50 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+||.++|||+|++.|++..
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 67899999999999999998864
No 66
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.77 E-value=0.041 Score=44.95 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=5.9
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+-.-|.|+|+.++|||.|+|+|+..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEC-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4467889999999999999999754
No 67
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.71 E-value=0.035 Score=45.89 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=21.2
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|+|+|+.++|||+|++.|.+.+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 78999999999999999998875
No 68
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=93.70 E-value=0.055 Score=51.48 Aligned_cols=24 Identities=38% Similarity=0.285 Sum_probs=21.4
Q ss_pred eEEEEEEecccccChhHHHHHHHH
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
-++-|+|+|...+|||+|+|.|.+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~ 94 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTG 94 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhC
Confidence 367899999999999999999964
No 69
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.68 E-value=0.04 Score=49.01 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.6
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+.-.|+|+|...+|||+|+|.|++.
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 45567999999999999999999865
No 70
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.62 E-value=0.14 Score=43.06 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.5
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+..-|.|+|+.++|||+|+|+|...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcC
Confidence 45677899999999999999999754
No 71
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.54 E-value=0.14 Score=42.41 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=22.2
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
....-|.|+|+.++|||.|+|+|...
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 45677899999999999999999754
No 72
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.52 E-value=0.07 Score=44.92 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=28.6
Q ss_pred HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+.++.++.. ...+-.+|+|+|+.++|||+|++.|...+.
T Consensus 9 ~l~~~~~~~---~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 9 FLCKTILAI---KTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHTS---CCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---ccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345555542 123446899999999999999999988764
No 73
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.46 E-value=0.067 Score=48.67 Aligned_cols=29 Identities=21% Similarity=0.160 Sum_probs=24.9
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+-.+|+|+|+.++|||+|++.|.+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 44568999999999999999999987653
No 74
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.45 E-value=0.035 Score=47.79 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.6
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+||.++|||+|++.|++..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 67889999999999999998864
No 75
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.39 E-value=0.049 Score=45.85 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=21.0
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.++|+|+.++|||+|++.|++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 76
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.38 E-value=0.04 Score=44.42 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|+|+.++|||+|++.|...+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998764
No 77
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.36 E-value=0.045 Score=50.36 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=24.7
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+=-+|+|+|+.++|||+|++.|.+.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34579999999999999999999887643
No 78
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.28 E-value=0.047 Score=47.32 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.0
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+++|+|+.++|||+||+.|++. ..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl-~p 47 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ-AL 47 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHhcC-CC
Confidence 5788999999999999999887 44
No 79
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.25 E-value=0.035 Score=48.78 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+||.++|||+||+.|++.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999997654
No 80
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.25 E-value=0.041 Score=45.08 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.3
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+|+|+|+.++|||+|++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36889999999999999999765
No 81
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.13 E-value=0.056 Score=45.52 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=21.1
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|+|+|+.+||||++++.|.+.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998754
No 82
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.08 E-value=0.029 Score=47.00 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=23.8
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
..+.+|+|+|..++|||+|+|+|+..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999874
No 83
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.07 E-value=0.052 Score=47.31 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+||.++|||+|++.|+...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478899999999999999998764
No 84
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.04 E-value=0.056 Score=47.50 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.8
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-+|+|+|+.++|||+|++.|.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999954
No 85
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.04 E-value=0.056 Score=48.36 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.0
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+|+|+||.++|||+||+.|++.+..
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCC
Confidence 47899999999999999999997643
No 86
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.03 E-value=0.064 Score=42.78 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=21.5
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+|.|.|+.++|||++++.|.+.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987753
No 87
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.01 E-value=0.055 Score=42.11 Aligned_cols=23 Identities=26% Similarity=0.080 Sum_probs=19.8
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.-|.|+|+.++|||+|+|+|+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 34778999999999999999754
No 88
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.96 E-value=0.051 Score=44.77 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=17.9
Q ss_pred EEEEEecccccChhHHHHHH
Q psy5031 57 VVVSVAGAFRKGKSFLLDFL 76 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~L 76 (281)
.+++++|+.++|||+|++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999953
No 89
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.94 E-value=0.063 Score=45.00 Aligned_cols=27 Identities=30% Similarity=0.212 Sum_probs=23.6
Q ss_pred eEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+=.+|.|+|+.++|||+|++.|.+.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998764
No 90
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.93 E-value=0.052 Score=48.77 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.6
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.|+|+|+.++|||+|+|.|++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999987543
No 91
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.92 E-value=0.062 Score=45.01 Aligned_cols=25 Identities=20% Similarity=0.096 Sum_probs=21.8
Q ss_pred EEEEEEecccccChhHHHHHHHHhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
=.+|+|+|+.++|||+|++.|.+.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3578899999999999999998764
No 92
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.91 E-value=0.039 Score=48.03 Aligned_cols=23 Identities=43% Similarity=0.345 Sum_probs=20.5
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+||.++|||+||+.|++.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999997654
No 93
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.87 E-value=0.077 Score=42.08 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.0
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+..-|.|+|+.++|||+|+|+|+..
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 45667899999999999999999864
No 94
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.86 E-value=0.11 Score=48.35 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=24.1
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+.-.||+|+|+.++|||+|++.|.+.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4557899999999999999999987753
No 95
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.86 E-value=0.06 Score=42.12 Aligned_cols=22 Identities=27% Similarity=0.143 Sum_probs=19.4
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|.|+|+.++|||+|+|+|++.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4788999999999999999754
No 96
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.85 E-value=0.056 Score=42.43 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=19.9
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.-|.|+|+.++|||+|+|+|+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 34789999999999999999854
No 97
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.82 E-value=0.043 Score=48.55 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=22.7
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+++|+||.++|||+||+.|++.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7899999999999999999987654
No 98
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.82 E-value=0.053 Score=42.50 Aligned_cols=22 Identities=36% Similarity=0.229 Sum_probs=19.1
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|.|+|+.++|||+|+|+|+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4678999999999999999753
No 99
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.73 E-value=0.06 Score=45.59 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.2
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+++|+||.++|||+|++.|+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 47889999999999999999843
No 100
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.71 E-value=0.062 Score=43.06 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.2
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..|+++|+.++|||+|+|+|.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999743
No 101
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.71 E-value=0.062 Score=44.95 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=27.2
Q ss_pred HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhh
Q psy5031 40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+.|+.++.- .+. +=.+++|+||.++|||+|++.|+...
T Consensus 12 ~~LD~~l~g-gi~--~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 12 KSLDKLLGG-GIE--TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHHTTS-SEE--SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHhHhcC-CCC--CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 566665531 111 22589999999999999999998753
No 102
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.69 E-value=0.065 Score=41.76 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=19.4
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|.|+|+.++|||+|+|+|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4788999999999999999764
No 103
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.65 E-value=0.063 Score=45.56 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+|+|+||.++|||+|++.|++.+
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 378899999999999999998764
No 104
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.63 E-value=0.074 Score=44.15 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.6
Q ss_pred EEEEEEecccccChhHHHHHHHHhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
=.+++++|+.++|||+|++.|++.+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3579999999999999999999886
No 105
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.63 E-value=0.071 Score=46.14 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=21.5
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+|+|+|+.++|||+|++.|.+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998654
No 106
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.61 E-value=0.049 Score=48.43 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+||.++|||+||+.|++.+
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998764
No 107
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.60 E-value=0.049 Score=47.56 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+||.++|||+||+.|++.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998764
No 108
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.58 E-value=0.064 Score=41.53 Aligned_cols=22 Identities=36% Similarity=0.253 Sum_probs=19.2
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|.++|+.++|||+|+|+|+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3678999999999999999754
No 109
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.55 E-value=0.05 Score=47.82 Aligned_cols=24 Identities=46% Similarity=0.544 Sum_probs=21.2
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+|+.++|||+||+.|++.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 789999999999999999987643
No 110
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.55 E-value=0.066 Score=48.59 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=23.4
Q ss_pred eEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+--+|+|+|+.++|||+|++.|.+.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988653
No 111
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.53 E-value=0.074 Score=48.53 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.6
Q ss_pred eEEEEEEecccccChhHHHHHHHHhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
++-|+.|.|+.++|||+|||.|++..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 57899999999999999999999763
No 112
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.53 E-value=0.051 Score=46.51 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=15.6
Q ss_pred EEEEEecccccChhHHHHHHH-Hhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLL-RYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll-~~l 80 (281)
.+|+|+||.++|||+|++.|. +.+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999998 653
No 113
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.52 E-value=0.093 Score=48.96 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=17.9
Q ss_pred EEEecccccChhHHHHHHHH
Q psy5031 59 VSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~ 78 (281)
|+|+|+.++|||+|+|.|+.
T Consensus 40 I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHhC
Confidence 58999999999999999853
No 114
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.44 E-value=0.076 Score=43.69 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=20.6
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.++.++|+.++|||+|++.|.+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 37899999999999999999864
No 115
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.42 E-value=0.064 Score=47.45 Aligned_cols=22 Identities=32% Similarity=0.243 Sum_probs=20.5
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++|+|+.++|||+|++.|++.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999885
No 116
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.38 E-value=0.054 Score=47.64 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=21.6
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+++|+|+.++|||+||+.|++.+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3789999999999999999987643
No 117
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.37 E-value=0.073 Score=42.59 Aligned_cols=24 Identities=33% Similarity=0.200 Sum_probs=20.5
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-.-|.|+|+.++|||+|+|+|++.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999999854
No 118
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.36 E-value=0.077 Score=49.06 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=28.1
Q ss_pred HHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhh
Q psy5031 39 YEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 39 ~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
..+|+.+... +.. =.+|+|+||.++|||+|++.|++.+
T Consensus 113 ~~vL~~vsl~--i~~--Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 113 INALKLWLKG--IPK--KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHHT--CTT--CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhhccceEE--ecC--CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4567665542 222 2467899999999999999999876
No 119
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.34 E-value=0.12 Score=43.15 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=20.9
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+-.-|.|+|..++|||+|+|+++..
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34556889999999999999996543
No 120
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.33 E-value=0.087 Score=42.69 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+|.|+|+.++|||+|++.|.+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 478999999999999999998754
No 121
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.31 E-value=0.056 Score=48.32 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=20.6
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+||.++|||+||+.|++.+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999997654
No 122
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.27 E-value=0.057 Score=47.47 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+||.++|||+||+.|++.+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998764
No 123
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.26 E-value=0.078 Score=49.07 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=29.4
Q ss_pred HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+++.+.. .-.+-.+|+|+|+.++|||+|+|.|++.+..
T Consensus 43 ~~l~~i~~----~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 43 DLIDAVLP----QTGRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp HHHHHHGG----GCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhCCc----ccCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 45665532 2245678999999999999999999987643
No 124
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.24 E-value=0.08 Score=41.67 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=19.8
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.-|.|+|+.++|||+|+|+|...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45779999999999999999754
No 125
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.23 E-value=0.058 Score=47.78 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|++.+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999998764
No 126
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.23 E-value=0.064 Score=43.56 Aligned_cols=22 Identities=41% Similarity=0.386 Sum_probs=19.3
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|+|+|+.++|||+|+|+|.+.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5778999999999999999754
No 127
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.22 E-value=0.051 Score=45.75 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=23.3
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+|+|+|+.++|||+|++.|++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 47899999999999999999998654
No 128
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=92.21 E-value=0.98 Score=41.47 Aligned_cols=25 Identities=36% Similarity=0.356 Sum_probs=21.4
Q ss_pred ceEEEEEEecccccChhHHHHHHHH
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
.....|+++|+.++|||+|+|.|.+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456889999999999999999954
No 129
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.21 E-value=0.055 Score=48.61 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+||.++|||+|++.|++.+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68899999999999999998764
No 130
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.20 E-value=0.058 Score=48.86 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+||.++|||+|++.|++.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998764
No 131
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.19 E-value=0.086 Score=43.11 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=22.5
Q ss_pred EEEEEEecccccChhHHHHHHHHhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
=..+.++||.+||||+|++.+.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999998764
No 132
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.18 E-value=0.049 Score=45.72 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=23.6
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.++.+|.|+|..++|||+|+|+|+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356788899999999999999999875
No 133
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.18 E-value=0.07 Score=47.77 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=20.5
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++|+|+.++|||+||+.|++.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999875
No 134
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.17 E-value=0.086 Score=41.28 Aligned_cols=21 Identities=24% Similarity=0.131 Sum_probs=19.1
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|.|+|+.++|||.|+|+|...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999765
No 135
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.15 E-value=0.079 Score=41.79 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=19.2
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+|.|+|+.+||||++++.| ..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHH-HH
Confidence 6889999999999999999 54
No 136
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.13 E-value=0.067 Score=43.39 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.3
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+..-|.|+|+.++|||+|+|+|+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4566789999999999999999754
No 137
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.11 E-value=0.05 Score=47.43 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.4
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+||.++|||+||+.|++.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67889999999999999997764
No 138
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.06 E-value=0.056 Score=44.97 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.0
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+|+|.|+.+||||+|++.|.+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6889999999999999999988643
No 139
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.03 E-value=0.091 Score=45.60 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.2
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|+||.++|||+|+|.|++..
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 56789999999999999998763
No 140
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.01 E-value=0.076 Score=42.81 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=20.7
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-..|+++|+.++|||+|+|+|...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999753
No 141
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.98 E-value=0.097 Score=44.22 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=23.7
Q ss_pred EEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+.+++|+|+.++|||+|++.|++.+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 568899999999999999999987643
No 142
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.97 E-value=0.065 Score=47.93 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+||.++|||+||+.|++.+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999997754
No 143
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.94 E-value=0.16 Score=41.79 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=19.2
Q ss_pred ceEEEEEEecccccChhHHHHHHHH
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
++-.-|.++|..++|||.|+|++.+
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3445677889999999999998754
No 144
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.86 E-value=0.067 Score=48.07 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|++.+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999997764
No 145
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.85 E-value=0.081 Score=42.03 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
...|.|+|+.++|||+|+|+|...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446789999999999999999754
No 146
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.84 E-value=0.069 Score=47.52 Aligned_cols=23 Identities=43% Similarity=0.540 Sum_probs=20.6
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+||.++|||+||+.|++.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999997654
No 147
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.83 E-value=0.068 Score=48.03 Aligned_cols=24 Identities=38% Similarity=0.353 Sum_probs=21.1
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+||.++|||+||+.|++.+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Confidence 689999999999999999987643
No 148
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.81 E-value=0.069 Score=47.65 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|++.+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 78999999999999999998753
No 149
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.80 E-value=0.093 Score=42.58 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.3
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+-..|.|+|+.++|||+|+|+|...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999999764
No 150
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.74 E-value=0.15 Score=40.51 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.3
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+-.-|.|+|+.++|||+|+|+|...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999999864
No 151
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.73 E-value=0.095 Score=43.53 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEEEecccccChhHHHHHHHH
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~ 78 (281)
+|+|+|+.++|||++++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 152
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.73 E-value=0.071 Score=47.45 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|.+.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999997764
No 153
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.72 E-value=0.071 Score=47.64 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.6
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|.+.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999997654
No 154
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.72 E-value=0.098 Score=41.65 Aligned_cols=25 Identities=24% Similarity=0.088 Sum_probs=21.4
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+..-|.|+|+.++|||+|+|+|+..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 4556789999999999999999854
No 155
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.66 E-value=0.097 Score=43.04 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=21.0
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-+|+|+|+.+||||++.+.|.+.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999865
No 156
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.63 E-value=0.091 Score=43.77 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=21.4
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+|.|+|+.++|||+|++.|.+.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378899999999999999998775
No 157
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.61 E-value=0.077 Score=46.59 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.6
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
...-|+|+|...+|||+|+|+|++.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 4457899999999999999999854
No 158
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.61 E-value=0.085 Score=44.15 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.8
Q ss_pred eEEEEEEecccccChhHHHHHHHHhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+-.+|+|+|+.++|||+|++.|.+.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998764
No 159
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.58 E-value=0.11 Score=42.29 Aligned_cols=39 Identities=26% Similarity=0.163 Sum_probs=29.0
Q ss_pred eCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 37 LDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 37 ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.|.+++..+ . .+ +=.++.++|+.++|||+|++.+.+.+.
T Consensus 23 ~n~~~~~~l-~--~~---~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 23 ENAELVYVL-R--HK---HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CTHHHHHHC-C--CC---CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred ccHHHHHHH-H--hc---CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 677888744 2 22 223567899999999999999998753
No 160
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.56 E-value=0.14 Score=41.64 Aligned_cols=27 Identities=22% Similarity=0.062 Sum_probs=22.8
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..+..-|.|+|+.++|||+|+|+|+..
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhC
Confidence 345667889999999999999999854
No 161
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.54 E-value=0.051 Score=44.87 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.2
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+-..|+|+|+.++|||+|+|.|++.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4467899999999999999999643
No 162
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.53 E-value=0.089 Score=44.20 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|+|+.++|||+|++.|...+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57788999999999999998875
No 163
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.49 E-value=0.12 Score=41.81 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.6
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+|.|.|+.++|||++++.|...+.
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999988754
No 164
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.46 E-value=0.12 Score=42.27 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.5
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+|.|.|+.++|||++++.|.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 588999999999999999998763
No 165
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.45 E-value=0.099 Score=42.39 Aligned_cols=23 Identities=35% Similarity=0.173 Sum_probs=19.9
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.-|.|+|+.++|||+|+|+|+..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 45788899999999999999764
No 166
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.44 E-value=0.079 Score=47.94 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=21.2
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+|+.++|||+||+.|++.+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 689999999999999999987643
No 167
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.43 E-value=0.084 Score=42.39 Aligned_cols=22 Identities=32% Similarity=0.241 Sum_probs=19.0
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|.|+|+.++|||+|+|+|.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3678999999999999999753
No 168
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.42 E-value=0.11 Score=48.74 Aligned_cols=26 Identities=38% Similarity=0.454 Sum_probs=23.3
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+|.|+||.++|||+||+.+++.+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccC
Confidence 38999999999999999999998654
No 169
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.39 E-value=0.097 Score=44.42 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=24.1
Q ss_pred eEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+.+|+|+|+.++|||+|++.|++.+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 3458999999999999999999998754
No 170
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.37 E-value=0.12 Score=41.83 Aligned_cols=24 Identities=25% Similarity=0.247 Sum_probs=21.8
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+|.|.|+.++|||++++.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998764
No 171
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.33 E-value=0.11 Score=41.97 Aligned_cols=25 Identities=32% Similarity=0.179 Sum_probs=21.0
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+-.-|.|+|..++|||+|+|+|+..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 3456779999999999999999854
No 172
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.33 E-value=0.1 Score=43.44 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=19.7
Q ss_pred EEEEecccccChhHHHHHHHH
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~ 78 (281)
+|+|+|+.+||||++++.|..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999976
No 173
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.27 E-value=0.1 Score=44.42 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.8
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+|+|+|+.++|||+|++.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 578999999999999999998865
No 174
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.23 E-value=0.11 Score=41.47 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=21.0
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+-.-|.++|+.++|||.|+|+|...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999999764
No 175
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.19 E-value=0.099 Score=41.00 Aligned_cols=21 Identities=33% Similarity=0.200 Sum_probs=18.3
Q ss_pred EEEEecccccChhHHHHHHHH
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~ 78 (281)
-|.++|+.++|||+|+|+|.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478899999999999999953
No 176
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.19 E-value=0.13 Score=40.68 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=28.8
Q ss_pred eCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 37 LDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 37 ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
-.+++++.+... +....-..|-|+|+.++|||+|+..+.+.+.+
T Consensus 26 g~~~~~~~l~~~--l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 26 GRDEEIRRTIQV--LQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCHHHHHHHHHH--HTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHH--HhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345566655442 11111223458899999999999999988754
No 177
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.14 E-value=0.14 Score=42.25 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=21.1
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|+|.|+.+||||++.+.|...+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 178
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.02 E-value=0.14 Score=42.45 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=21.6
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.++.|+|+.++|||+|++.++..+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4788899999999999999987643
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=90.99 E-value=0.1 Score=48.11 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.8
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
--|+|+|++.+|||+|+|.|.+.
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 38999999999999999999864
No 180
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.97 E-value=0.13 Score=41.01 Aligned_cols=23 Identities=26% Similarity=0.172 Sum_probs=20.0
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.-|.|+|+.++|||+|+|+|...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999754
No 181
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.95 E-value=0.13 Score=47.06 Aligned_cols=27 Identities=33% Similarity=0.252 Sum_probs=23.7
Q ss_pred EEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
=.+|+|+|+.++|||+|++.|...+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 358999999999999999999988653
No 182
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.90 E-value=0.14 Score=44.65 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=22.8
Q ss_pred EEEEEEecccccChhHHHHHHHHhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
--+|+|.|+.+||||++.+.|...+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35899999999999999999988653
No 183
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.89 E-value=0.13 Score=41.99 Aligned_cols=25 Identities=16% Similarity=0.054 Sum_probs=21.7
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+..-|.|+|+.++|||+|+|+|+..
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcC
Confidence 4566889999999999999999875
No 184
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.88 E-value=0.11 Score=50.37 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=22.4
Q ss_pred CCCceEEEEEEecccccChhHHHHHHHHh
Q psy5031 51 VKDKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 51 ~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+...-+--|+|+|+.++|||+|+|.|++.
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 33333334899999999999999999875
No 185
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=90.80 E-value=0.45 Score=45.31 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=11.1
Q ss_pred chhhccCchhHHHHHHh
Q psy5031 134 VSAFRKGKSFLLDFLLR 150 (281)
Q Consensus 134 ~~~~r~gkS~Lln~l~~ 150 (281)
+|.-..|||.|+|.|++
T Consensus 201 vG~~~vGKSslin~l~~ 217 (456)
T 4dcu_A 201 IGRPNVGKSSLVNAMLG 217 (456)
T ss_dssp ECSTTSSHHHHHHHHHT
T ss_pred ecCCCCCHHHHHHHHhC
Confidence 45566677777776664
No 186
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.79 E-value=0.12 Score=42.50 Aligned_cols=26 Identities=19% Similarity=0.066 Sum_probs=21.7
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+..-|.|+|..++|||+|+|+|+..
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 34567889999999999999999864
No 187
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.78 E-value=0.071 Score=49.14 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=21.5
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
-+|+|+|+.++|||+|++.|++.+.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CEEEEECCCCchHHHHHHHHHcCCC
Confidence 3689999999999999999987643
No 188
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.74 E-value=0.15 Score=41.74 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=21.1
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|+|+.+||||++.+.|.+++
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998875
No 189
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.73 E-value=0.11 Score=49.98 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=21.9
Q ss_pred EEEEEEecccccChhHHHHHHHHhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-.+|+|+|+.++|||+|+|.|++..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 3489999999999999999998753
No 190
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.69 E-value=0.14 Score=40.71 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=19.5
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.-|.|+|+.++|||+|+|++...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 34678899999999999999754
No 191
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.66 E-value=0.14 Score=49.18 Aligned_cols=28 Identities=29% Similarity=0.182 Sum_probs=24.3
Q ss_pred eEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+=.+|.|+||.++|||+||+.+++.+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 4458999999999999999999998643
No 192
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.62 E-value=0.15 Score=47.90 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.5
Q ss_pred EEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
=.+|+|+|+.++|||+||+.|++.+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 357999999999999999999997653
No 193
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.62 E-value=0.17 Score=41.01 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+|.|.|+.+||||++...|.+.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998764
No 194
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.61 E-value=0.16 Score=40.72 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=19.8
Q ss_pred EEEEecccccChhHHHHHHHH
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~ 78 (281)
+|.|+|+.+||||++.+.|.+
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 688999999999999999987
No 195
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.60 E-value=0.14 Score=41.96 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=22.7
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..+-.-|.|+|+.++|||+|+|+++..
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 345567889999999999999999765
No 196
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.53 E-value=0.15 Score=42.89 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.3
Q ss_pred EEEEEecccccChhHHHHHHHH
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
.+|+|.|+.+||||++++.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 197
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.48 E-value=0.23 Score=40.46 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=22.6
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.++-.-|.|+|+.++|||+|+|+|+..
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcC
Confidence 345567889999999999999999754
No 198
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.45 E-value=0.1 Score=47.17 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=19.7
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++++|+.++|||+|||.|+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTT
T ss_pred eEEEECCCCCcHHHHHHHhccc
Confidence 6789999999999999999654
No 199
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.38 E-value=0.14 Score=46.41 Aligned_cols=20 Identities=35% Similarity=0.383 Sum_probs=18.7
Q ss_pred EEEEecccccChhHHHHHHH
Q psy5031 58 VVSVAGAFRKGKSFLLDFLL 77 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll 77 (281)
+++++|+.++|||+|+|.|+
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999998
No 200
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.37 E-value=0.18 Score=41.10 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.8
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+|.+.|+.++|||++++.|.+.+.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3677999999999999999998763
No 201
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.37 E-value=0.12 Score=41.82 Aligned_cols=24 Identities=21% Similarity=0.104 Sum_probs=20.2
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-.-|.|+|..++|||+|+|+|...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345778999999999999999754
No 202
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.33 E-value=0.17 Score=41.16 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.4
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+|.++|+.++|||++++.|.+.+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478899999999999999998875
No 203
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.31 E-value=0.18 Score=40.84 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.7
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+|+|.|+.+||||++.+.|.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998763
No 204
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.31 E-value=0.12 Score=41.74 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=20.8
Q ss_pred ceEEEEEEecccccChhHHHHHHHH
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
.+-.-|.|+|+.++|||+|+|+|..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3456788999999999999999964
No 205
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.30 E-value=0.12 Score=46.46 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.9
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|++.+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998764
No 206
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.25 E-value=0.16 Score=41.58 Aligned_cols=26 Identities=27% Similarity=0.218 Sum_probs=21.1
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+-.-|.|+|+.++|||+|+|+|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34456789999999999999999764
No 207
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.25 E-value=0.17 Score=41.21 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|.|+.+||||++.+.|.+.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998765
No 208
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.19 E-value=0.19 Score=41.02 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.8
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+|.|.|+-+||||++++.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 209
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.19 E-value=0.24 Score=45.78 Aligned_cols=28 Identities=21% Similarity=0.138 Sum_probs=24.2
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
...-+|+|+|+.++|||+|+|.|...+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3566889999999999999999998764
No 210
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.18 E-value=0.18 Score=40.62 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.9
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|-++|+.++|||++.+.|.+.+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 67899999999999999999875
No 211
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.18 E-value=0.11 Score=48.47 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|+|+|+.++|||+|+|.|++..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 67788999999999999999874
No 212
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=90.16 E-value=0.72 Score=46.83 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=23.7
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
...+..|+|+|...+|||+|+|+|+.+
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~ 33 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYY 33 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHh
Confidence 345788999999999999999999865
No 213
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.12 E-value=0.17 Score=46.19 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.5
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.|++++|+.++|||+|++.|+..+..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999988654
No 214
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.11 E-value=0.22 Score=40.71 Aligned_cols=27 Identities=26% Similarity=0.162 Sum_probs=21.7
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+.+-.-|.|+|+.++|||.|+|+|+..
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhC
Confidence 345567889999999999999999764
No 215
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.10 E-value=0.2 Score=40.77 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.+.|+.+||||++.+.|.+.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998764
No 216
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.07 E-value=0.22 Score=41.10 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=21.6
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+..-|.|+|..+.|||.|+|+|.+.
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999999854
No 217
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.03 E-value=0.12 Score=47.14 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.2
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+|+.++|||+||+.|++.+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 689999999999999999987643
No 218
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.03 E-value=0.18 Score=46.78 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=24.7
Q ss_pred eEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+=.||+++|+.++|||+|++.|.+++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4479999999999999999999988654
No 219
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.01 E-value=0.19 Score=40.60 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=21.4
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+|.+.|+.+||||++.+.|...+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998764
No 220
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.93 E-value=0.16 Score=41.20 Aligned_cols=25 Identities=20% Similarity=0.115 Sum_probs=20.9
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+-.-|.|+|+.++|||+|+|+|...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999999743
No 221
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.93 E-value=0.2 Score=41.15 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.1
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+|.|.|+.+||||++++.|...+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3789999999999999999988753
No 222
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.90 E-value=0.16 Score=47.98 Aligned_cols=22 Identities=41% Similarity=0.422 Sum_probs=19.8
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++++|+.++|||+|+|.|+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 6789999999999999999854
No 223
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.90 E-value=0.2 Score=41.80 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.5
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+|.|+|+.++|||+++..|.+.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 478899999999999999999875
No 224
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.89 E-value=0.17 Score=41.94 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.4
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+..-|.|+|+.++|||+|+|+|.+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999999865
No 225
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.85 E-value=0.22 Score=40.25 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.0
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+-.-|.|+|+.++|||+|+|+|...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999999764
No 226
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.83 E-value=0.2 Score=41.54 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.4
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+|.|.|+.+||||++.+.|.+.+..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999987643
No 227
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.79 E-value=0.12 Score=41.41 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=20.0
Q ss_pred eEEEEEEecccccChhHHHHHHHH
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
+-.-|.|+|+.++|||+|+|+|..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445677899999999999999963
No 228
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.77 E-value=0.16 Score=48.26 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.6
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
-+++|+||.++|||+|++.|++.+.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCC
Confidence 3689999999999999999987643
No 229
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.75 E-value=0.2 Score=44.06 Aligned_cols=25 Identities=12% Similarity=0.096 Sum_probs=22.2
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+|.|+|+.+||||+|...|...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC
Confidence 7899999999999999999887543
No 230
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.71 E-value=0.17 Score=41.93 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=19.8
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.-|.|+|+.++|||+|+|+|...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 45788999999999999999764
No 231
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.70 E-value=0.18 Score=40.38 Aligned_cols=23 Identities=22% Similarity=0.118 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|.|+.+||||++++.|...+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 232
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.49 E-value=0.14 Score=43.97 Aligned_cols=26 Identities=23% Similarity=0.453 Sum_probs=22.2
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+=.+|+|.|+-++|||+|++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34468999999999999999999765
No 233
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=89.47 E-value=0.17 Score=44.57 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.7
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.-.|+++|+.++|||+|+|+|.+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999754
No 234
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.46 E-value=0.19 Score=40.83 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|+|+.+||||++...|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998765
No 235
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.46 E-value=0.16 Score=45.94 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=18.8
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+|+|.|+.+||||++.+.|...+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 799999999999999999988654
No 236
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.45 E-value=0.19 Score=41.73 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=21.9
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
....-|.|+|+.++|||+|+|+|+..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcC
Confidence 34567889999999999999999753
No 237
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=89.41 E-value=0.53 Score=40.56 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=18.5
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|.|+|..+.|||.|++++...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4667899999999999999753
No 238
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.39 E-value=0.24 Score=39.49 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|.|+.+||||++++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 239
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.36 E-value=0.19 Score=41.25 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=20.0
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.-|.|+|+.++|||+|+|++...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999754
No 240
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.35 E-value=0.25 Score=39.75 Aligned_cols=28 Identities=25% Similarity=0.232 Sum_probs=22.5
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
....+|.|.|..+||||++...|...+.
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999988653
No 241
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.34 E-value=0.28 Score=39.75 Aligned_cols=27 Identities=22% Similarity=0.123 Sum_probs=23.1
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..+..-|.|+|+.++|||.|+|+|++.
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 345677899999999999999999865
No 242
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.33 E-value=0.23 Score=41.16 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.7
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+|.|.|+.+||||++++.|.+.+.
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 788999999999999999998764
No 243
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.31 E-value=0.18 Score=47.51 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.4
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+||.++|||+||+.|++...
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 789999999999999999987643
No 244
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=89.28 E-value=0.17 Score=47.47 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.5
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+.+|+|+|+.++|||+|+|.|.+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 5667999999999999999999754
No 245
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=89.27 E-value=0.17 Score=40.45 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=11.2
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+..-|.|+|+.++|||+|+|+|...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 5667899999999999999999754
No 246
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.26 E-value=0.21 Score=41.33 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=20.3
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+..-|.|+|+.++|||.|+|+|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456789999999999999999764
No 247
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.25 E-value=0.19 Score=46.33 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.5
Q ss_pred EEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
-..++|+|+.++|||+|++.|++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 567899999999999999999987543
No 248
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.16 E-value=0.31 Score=39.61 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=22.2
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..+-.-|.|+|..++|||+|+|+|.+.
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 345566789999999999999999764
No 249
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.16 E-value=0.12 Score=47.70 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|+|+|+.++|||+|||.|++..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999998874
No 250
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.04 E-value=0.19 Score=47.46 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.3
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+||.++|||+||+.|++.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 689999999999999999987643
No 251
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=89.03 E-value=0.21 Score=41.22 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=19.7
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.-|.|+|..++|||+|+|+|...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35778999999999999999764
No 252
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.03 E-value=0.18 Score=47.62 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.4
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+||.++|||+||+.|++...
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 789999999999999999987653
No 253
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.02 E-value=0.53 Score=41.04 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=21.9
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+|.++|+.+||||+++..|.+.+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 678899999999999999998875
No 254
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.01 E-value=0.24 Score=40.79 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=20.9
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|.|+.++|||++++.|.+.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998875
No 255
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.00 E-value=0.2 Score=47.29 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.3
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+||.++|||+||+.|++...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCC
Confidence 688999999999999999987643
No 256
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=88.98 E-value=0.21 Score=41.91 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.2
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
...-|.|+|+..+|||+|+|+|.+.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999999864
No 257
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=88.97 E-value=0.29 Score=40.07 Aligned_cols=28 Identities=21% Similarity=0.206 Sum_probs=23.8
Q ss_pred eEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+=.+|.++|+.++|||++++.|...+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4467889999999999999999988653
No 258
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.95 E-value=0.2 Score=40.84 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|+|+.+||||++...|...+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998865
No 259
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.95 E-value=0.32 Score=44.76 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=24.1
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+..+|+|+|+.++|||+|+|.|+..+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4567788999999999999999988754
No 260
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=88.94 E-value=0.2 Score=40.51 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=21.6
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..+-.-|.|+|..++|||+|+|+|+..
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 456667889999999999999999643
No 261
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.90 E-value=0.27 Score=39.92 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.5
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.++|+.++|||++...|.+.+
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999998875
No 262
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=88.87 E-value=0.2 Score=47.25 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.3
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+||.++|||+||+.|++...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 688999999999999999987643
No 263
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.86 E-value=0.24 Score=39.27 Aligned_cols=24 Identities=17% Similarity=0.056 Sum_probs=20.8
Q ss_pred EEEecccccChhHHHHHHHHhhhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
|-|+|+.++|||+|+..+.+.+..
T Consensus 46 vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 46 PILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEESCGGGCHHHHHHHHHHHHHT
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999988643
No 264
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=88.80 E-value=0.2 Score=47.70 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.4
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+||.++|||+||+.|++...
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 689999999999999999987643
No 265
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=88.72 E-value=0.21 Score=47.32 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=21.3
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+||.++|||+||+.|++...
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHHcCCC
Confidence 788999999999999999987643
No 266
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.58 E-value=0.32 Score=40.19 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.5
Q ss_pred eEEEEEEecccccChhHHHHHHHHhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
...+|.|.|+.+||||++.+.|.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34589999999999999999998764
No 267
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.49 E-value=0.28 Score=43.52 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+|+|.|+.++|||++++.|...+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998654
No 268
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.48 E-value=0.26 Score=46.43 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=23.9
Q ss_pred EEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
=.||+++|+.++|||+|++.|..++..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 368999999999999999999988653
No 269
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.48 E-value=0.28 Score=40.64 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=25.7
Q ss_pred HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHH
Q psy5031 40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
.+|+.++.- .+... .++.|+|+.++|||+|+..++.
T Consensus 7 ~~LD~~l~G-gi~~G--~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 7 KSLDSLLGG-GFAPG--VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHHTTS-SBCTT--SEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhhcC-CCcCC--EEEEEECCCCCCHHHHHHHHHH
Confidence 456665531 12222 3788999999999999999986
No 270
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.47 E-value=0.3 Score=40.84 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=20.2
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.|.|.|+.+||||++++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37789999999999999997764
No 271
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=88.42 E-value=0.25 Score=40.36 Aligned_cols=25 Identities=20% Similarity=0.061 Sum_probs=20.1
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+..-|.|+|+.++|||+|+|+|++.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4456789999999999999999754
No 272
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.40 E-value=0.41 Score=38.30 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=22.3
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..+..-|.|+|+.++|||+|+|++.+.
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHT
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhh
Confidence 456677899999999999999877654
No 273
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.34 E-value=0.32 Score=41.42 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=23.8
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
..-.+|+|+|..+||||++.+.|...+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 456889999999999999999998764
No 274
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=88.32 E-value=1.2 Score=46.16 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=29.3
Q ss_pred CHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHh
Q psy5031 38 DYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 38 n~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+.+-+..+.. ....+--|+|+|...+|||+|+|+|+.+
T Consensus 5 ~~~~~~~~m~----~~~~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 5 TVDQMRSLMD----KVTNVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp CHHHHHHHHH----CGGGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred CHHHHHHHhh----CcccccEEEEECCCCCCHHHHHHHHHHh
Confidence 4556665543 2346778999999999999999999876
No 275
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=88.21 E-value=0.19 Score=40.82 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=20.0
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-.-|.|+|..++|||+|+|+|...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 345779999999999999999644
No 276
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=88.21 E-value=0.27 Score=41.33 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=20.7
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+-.-|.|+|+..+|||.|+|+|.+.
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3456779999999999999999764
No 277
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=88.14 E-value=0.5 Score=46.54 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=21.8
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+.-|+|+|...+|||+|+|+|+.+
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCChHHHHHHHHHhh
Confidence 4667889999999999999999864
No 278
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=88.04 E-value=0.44 Score=39.26 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=21.8
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+-.-|.|+|+.++|||.|+|+|...
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34566889999999999999999754
No 279
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.03 E-value=0.25 Score=41.05 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=30.2
Q ss_pred eCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 37 LDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 37 ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.++++++.+..... ..+-..|-|+|+.+||||+|+..+.+.+..
T Consensus 35 ~~~~~~~~l~~~~~--~~~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 35 GNDELIGALKSAAS--GDGVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp CCHHHHHHHHHHHH--TCSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh--CCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45677776544211 112345668999999999999999987653
No 280
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=87.90 E-value=0.34 Score=40.18 Aligned_cols=23 Identities=22% Similarity=0.068 Sum_probs=20.9
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|.|+.+||||++.+.|...+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998865
No 281
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.90 E-value=0.25 Score=40.02 Aligned_cols=24 Identities=21% Similarity=0.040 Sum_probs=21.2
Q ss_pred EEEecccccChhHHHHHHHHhhhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
|-+.|+.++|||+|+..+.+.+.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc
Confidence 789999999999999999987643
No 282
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=87.89 E-value=0.18 Score=47.24 Aligned_cols=24 Identities=17% Similarity=0.409 Sum_probs=21.2
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+||.++|||+||+.|++...
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCccHHHHHHHHHcCCC
Confidence 688999999999999999987643
No 283
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.88 E-value=0.28 Score=39.86 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=20.8
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+|.|+|+.++|||++++.|...+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 356789999999999999998765
No 284
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=87.87 E-value=0.28 Score=40.59 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=20.8
Q ss_pred ceEEEEEEecccccChhHHHHHHH
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLL 77 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll 77 (281)
.+..-|.|+|+.++|||+|+|+|.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHH
Confidence 456788999999999999999985
No 285
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.85 E-value=0.28 Score=39.84 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.0
Q ss_pred ceEEEEEEecccccChhHHHHHHHH
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
.+-.-|.|+|+.++|||+|+|+|..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3456788999999999999999953
No 286
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.82 E-value=0.32 Score=40.93 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=26.3
Q ss_pred HHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHh
Q psy5031 40 EALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 40 eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..|+.++.- .+. +=.++.|+|+.++|||+|+..++..
T Consensus 11 ~~LD~~l~g-gi~--~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 11 KELDKLLQG-GIE--TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp HHHHHHTTT-SEE--TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHhhcC-CCc--CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 467766531 111 1137889999999999999999875
No 287
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.82 E-value=0.17 Score=47.49 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=21.2
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+||.++|||+||+.|++...
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 688999999999999999987643
No 288
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=87.81 E-value=0.14 Score=47.10 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.8
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.--|+|+|...+|||+|+|+|++.
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCC
Confidence 447899999999999999999654
No 289
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.80 E-value=0.31 Score=43.15 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=27.3
Q ss_pred HHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 41 ALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 41 al~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+|+.+.. .+... .++.|+|+.++|||+|++.|+..+.
T Consensus 24 ~Ld~i~~--~l~~G--~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 24 GINDKTL--GARGG--EVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp THHHHHC--SBCTT--CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCC--eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5666653 23322 3788999999999999999998754
No 290
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=87.80 E-value=0.24 Score=47.03 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.2
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..-|+|+|+.++|||+|+|+|++.
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CceEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999865
No 291
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=87.79 E-value=0.3 Score=48.40 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=23.7
Q ss_pred EEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
=.||+|+|+.++|||+|++.|++++..
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 358999999999999999999988653
No 292
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=87.78 E-value=0.19 Score=40.64 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=19.6
Q ss_pred eEEEEEEecccccChhHHHHHHH
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLL 77 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll 77 (281)
+-.-|.|+|+.++|||+|+|+|.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 44558899999999999999984
No 293
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=87.72 E-value=0.28 Score=40.68 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=20.5
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+-.-|.|+|..++|||+|+|++...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456689999999999999999854
No 294
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.72 E-value=0.28 Score=39.59 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=16.9
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|.|+.+||||++.+.|...+
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78899999999999999998765
No 295
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=87.67 E-value=0.27 Score=41.15 Aligned_cols=25 Identities=28% Similarity=0.175 Sum_probs=20.5
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+-.-|.|+|+.++|||+|+|+|...
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456789999999999999999753
No 296
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=87.62 E-value=0.15 Score=47.16 Aligned_cols=22 Identities=32% Similarity=0.253 Sum_probs=19.2
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++++|+.++|||+|+|.|+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 7889999999999999999654
No 297
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.55 E-value=0.44 Score=40.81 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=26.3
Q ss_pred CCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 52 KDKHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
..+...++.+.|.-++|||+|++.|+.++.
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 466788999999999999999999997764
No 298
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=87.52 E-value=0.24 Score=44.89 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=17.7
Q ss_pred EEecccccChhHHHHHHHHh
Q psy5031 60 SVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 60 sI~G~~RtGKSfLLN~Ll~~ 79 (281)
+|+|+.++|||+|+|.|...
T Consensus 22 ~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 22 MVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEETTSSHHHHHHHHHC-
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 89999999999999998754
No 299
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=87.52 E-value=0.26 Score=46.96 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+||.++|||+||+.|++..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68899999999999999998754
No 300
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=87.49 E-value=0.25 Score=48.88 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.0
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..-.|+|+|...+|||+|+|+|++.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 301
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=87.42 E-value=0.26 Score=43.59 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.3
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.|+++|...+|||+|+|+|.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4788999999999999999754
No 302
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=87.37 E-value=0.96 Score=45.89 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.3
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..+..|+|+|...+|||+|+|+|+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~ 35 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYY 35 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHh
Confidence 46788999999999999999999865
No 303
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=87.25 E-value=0.26 Score=43.73 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.5
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.|+++|...+|||+|+|+|.+.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5788999999999999999754
No 304
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=87.22 E-value=0.34 Score=41.41 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=18.7
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|-|+||.++||++|++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999876
No 305
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=87.19 E-value=0.35 Score=43.96 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=24.4
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
....+|+|+|+.++|||+|++.+.+.+..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 45777788999999999999999987643
No 306
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.17 E-value=0.25 Score=47.94 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=22.0
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+|+|+|+.++|||+|++.|+++...
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~p 164 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYALK 164 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred EEEEECCCCCCHHHHHHHHhCcccc
Confidence 5788899999999999999998644
No 307
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=87.16 E-value=0.34 Score=39.80 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=20.4
Q ss_pred ceEEEEEEecccccChhHHHHHHH
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLL 77 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll 77 (281)
.+-.-|.|+|+.++|||.|+|+|.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 344568899999999999999995
No 308
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=87.08 E-value=0.26 Score=40.76 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=18.4
Q ss_pred EEEEecccccChhHHHHHHHH
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~ 78 (281)
-|.++|+.++|||+|+|+|.+
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 467999999999999999953
No 309
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.07 E-value=0.25 Score=48.86 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.7
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-|++++||.++|||+||+.|++.+
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999998754
No 310
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=87.04 E-value=2 Score=43.75 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=22.3
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..+-.|+|+|...+|||+|+++|+.+
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~ 33 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFY 33 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHh
Confidence 34667899999999999999999864
No 311
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=87.04 E-value=0.32 Score=46.39 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.5
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-.|+|+|+.++|||+|+|.|.+.
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46889999999999999999874
No 312
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.02 E-value=0.3 Score=48.17 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|.+.+
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998764
No 313
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.02 E-value=0.4 Score=41.11 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=21.7
Q ss_pred EEEEEEecccccChhHHHHHHHHhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-.+|+|+|+.++|||++++.|...+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3479999999999999999998754
No 314
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.99 E-value=0.35 Score=39.29 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.4
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+..|+|+.++|||+|+..|..-+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 77899999999999999997654
No 315
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=86.98 E-value=0.36 Score=41.53 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=20.3
Q ss_pred EEEecccccChhHHHHHHHHhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l 80 (281)
|.++||.+||||+|++.+.+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998865
No 316
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.96 E-value=0.37 Score=42.42 Aligned_cols=24 Identities=25% Similarity=0.141 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.++.|+|+.++|||+|+.+++..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378899999999999999998764
No 317
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=86.82 E-value=0.79 Score=43.99 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=20.3
Q ss_pred eEEEEEEecccccChhHHHHHHHH
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
...-|+|+|..++|||+|+|+|+.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~ 56 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVG 56 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHc
Confidence 345688999999999999999854
No 318
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.78 E-value=0.38 Score=40.87 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=21.0
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+|.|.|+.+||||++++.|...+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 368899999999999999998764
No 319
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=86.78 E-value=0.22 Score=49.77 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.5
Q ss_pred EEEEEEecccccChhHHHHHHHHhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+-.|+|+|+.++|||+|||.|++..
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CCeEEEECCCCChHHHHHHHHhCCC
Confidence 3349999999999999999998753
No 320
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=86.77 E-value=0.41 Score=40.05 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=20.1
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.|.|.|+.+||||++++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37789999999999999997764
No 321
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=86.75 E-value=0.98 Score=45.34 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=17.8
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+--|+|+|...+|||+|+++|+.+
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~ 27 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQI 27 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3566899999999999999999865
No 322
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=86.74 E-value=0.43 Score=40.12 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=22.3
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+|.|.|+.++|||++++.|.+.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4788899999999999999998865
No 323
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=86.72 E-value=0.43 Score=39.32 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=20.4
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+|.++|+.+||||++.+.|.+.
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999999887
No 324
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=86.71 E-value=0.89 Score=40.80 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+|-++|+.++|||+|...|+..+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 477799999999999999998764
No 325
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.70 E-value=0.58 Score=41.93 Aligned_cols=46 Identities=13% Similarity=-0.026 Sum_probs=32.4
Q ss_pred EEeCHHHHHHHHcccCC-CCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 35 FILDYEALERILLQDHV-KDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 35 l~ln~eal~~il~~~~~-~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+.-++++++.+... + .......+-++||.++|||+|++.+.+.+.+
T Consensus 16 ~vg~~~~~~~l~~~--~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 16 LSHNEELTNFLKSL--SDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp CCSCHHHHHHHHTT--TTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred hcCCHHHHHHHHHH--HhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 44567777766542 2 2222323789999999999999999997654
No 326
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=86.66 E-value=1 Score=45.30 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=20.2
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+--|+|+|...+|||+|+|+|+.+
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~ 29 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEY 29 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4667899999999999999999865
No 327
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=86.63 E-value=0.26 Score=47.39 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=18.6
Q ss_pred EEecccccChhHHHHHHHHh
Q psy5031 60 SVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 60 sI~G~~RtGKSfLLN~Ll~~ 79 (281)
+|+|+.++|||+|+|.|++.
T Consensus 35 ~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 35 MVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEECCTTSSHHHHHHHHTTC
T ss_pred EEECCCCCcHHHHHHHHhCC
Confidence 99999999999999999765
No 328
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.54 E-value=0.24 Score=48.70 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=29.1
Q ss_pred eCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 37 LDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 37 ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+.+++++.+-.. +.... +|.|+|+.+||||+|||.|++.+..
T Consensus 245 ~~~~~l~~l~~~--v~~g~--~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 245 VPSGVLAYLWLA--IEHKF--SAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp SCHHHHHHHHHH--HHTTC--CEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCHHHHHHHHHH--HhCCC--EEEEECCCCCCHHHHHHHHHhhCCC
Confidence 456666654331 12222 3789999999999999999987643
No 329
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=86.51 E-value=0.13 Score=42.82 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=20.2
Q ss_pred eEEEEEEecccccChhHHHHHHHH
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
+..-|.|+|..++|||+|+|+|+.
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445677999999999999999864
No 330
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=86.46 E-value=0.18 Score=48.36 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.0
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.++|+++|+..+|||+|||.|...
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Confidence 567999999999999999999643
No 331
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=86.37 E-value=0.32 Score=48.00 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.6
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+++|+|+.++|||+|++.|++...
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3688999999999999999988643
No 332
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=86.34 E-value=0.31 Score=43.61 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.1
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..|+++|...+|||+|+|+|.+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 36889999999999999999753
No 333
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=86.21 E-value=0.34 Score=48.69 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.5
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+||.++|||+||+.|.+.+.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 789999999999999999987643
No 334
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=86.18 E-value=0.51 Score=40.38 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=21.5
Q ss_pred ceEEEEEEecccccChhHHHHHHHH
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
.+..-|.|+|..+.|||.|+|++..
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3556789999999999999999963
No 335
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=86.10 E-value=0.5 Score=41.70 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=20.8
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-..|+++|..++|||+|+|+|.+.
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 456889999999999999999753
No 336
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=86.09 E-value=0.4 Score=45.23 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=19.4
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|+|+..+|||+|+|.|.+.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999876
No 337
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=85.91 E-value=0.41 Score=46.11 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=28.7
Q ss_pred CHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 38 DYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 38 n~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
...+|+.++. --+++ +++|+|+.++|||+||+.|++...
T Consensus 144 g~~vld~vl~--i~~Gq---~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 144 GVRAINALLT--VGRGQ---RMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp SCHHHHHHSC--CBTTC---EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CceEEeeeEE--ecCCC---EEEEECCCCCCHHHHHHHHhcccC
Confidence 4568987732 22343 567788999999999999998853
No 338
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=85.88 E-value=0.3 Score=48.30 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.6
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|++..
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68899999999999999998764
No 339
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=85.73 E-value=0.43 Score=44.48 Aligned_cols=44 Identities=23% Similarity=0.285 Sum_probs=31.3
Q ss_pred ceEEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 33 HKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 33 ~~l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
..|.....|++.++. --+++ +++|+|+.++|||+||+.|++...
T Consensus 53 ~~~~tg~~ald~ll~--i~~Gq---~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 53 QPFILGVRAIDGLLT--CGIGQ---RIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp SEECCSCHHHHHHSC--EETTC---EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eecCCCCEEEEeeee--ecCCC---EEEEECCCCCCHHHHHHHHhcCCC
Confidence 344445678987742 11233 677889999999999999998854
No 340
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=85.67 E-value=0.52 Score=39.68 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+|.+.|+.+||||++.+.|...+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 368899999999999999998875
No 341
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=85.65 E-value=0.31 Score=48.12 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.0
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+||.++|||+|++.|++...
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhhccC
Confidence 688999999999999999987643
No 342
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=85.65 E-value=0.55 Score=38.25 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.9
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
++-|.|+.++|||+|+..+.+.+.+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 6678999999999999999987654
No 343
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=85.51 E-value=0.44 Score=46.79 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=23.3
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+++|+||.++|||+||+.|.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 78999999999999999999987543
No 344
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=85.36 E-value=0.34 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+++|+||.++|||+|++.|++..
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 378899999999999999998764
No 345
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=85.27 E-value=0.49 Score=41.51 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=20.3
Q ss_pred EEEecccccChhHHHHHHHHhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l 80 (281)
|.++||.+||||+|++.+...+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 7899999999999999998865
No 346
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.26 E-value=0.55 Score=41.80 Aligned_cols=29 Identities=17% Similarity=0.270 Sum_probs=23.8
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+-..|.|+|+.|+|||+|++.+.+.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34457789999999999999999987643
No 347
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.16 E-value=0.55 Score=40.72 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=22.5
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+|.|.|+.++|||++++.|...+.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999998864
No 348
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.11 E-value=0.39 Score=43.41 Aligned_cols=43 Identities=16% Similarity=0.090 Sum_probs=30.2
Q ss_pred CHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 38 DYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 38 n~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
++++++.+... +....+.-+-++||.++|||+|+..+.+.+.+
T Consensus 30 ~~~~~~~L~~~--i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKF--VDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHH--HHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHH--HhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 46666655431 22233333778999999999999999998765
No 349
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=85.10 E-value=0.38 Score=48.86 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.0
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-..|+|+|.+.+|||+|+|.|++.
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999999854
No 350
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=84.89 E-value=0.56 Score=39.38 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=19.9
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
++.|+|+.++|||+|+.+++...
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78889999999999988887653
No 351
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=85.12 E-value=0.18 Score=41.51 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=21.9
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++-.-|.|+|+.++|||+|+|+|...
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 344556789999999999999999754
No 352
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=84.80 E-value=0.7 Score=43.79 Aligned_cols=37 Identities=27% Similarity=0.263 Sum_probs=26.2
Q ss_pred HHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHh
Q psy5031 41 ALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 41 al~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.++.++.+ ...++..-|+|+|....|||+|+|+|+..
T Consensus 11 ~i~~~l~~--~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~ 47 (434)
T 1zun_B 11 DILAYLGQ--HERKEMLRFLTCGNVDDGKSTLIGRLLHD 47 (434)
T ss_dssp -----CCS--TTSCEEEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHHhh--cccCCceEEEEEECCCCCHHHHHHHHHhh
Confidence 34444442 24567788999999999999999999865
No 353
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=84.74 E-value=0.38 Score=48.30 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+||+.|.+.+
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 378999999999999999997654
No 354
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=84.74 E-value=0.58 Score=41.03 Aligned_cols=30 Identities=17% Similarity=0.063 Sum_probs=25.9
Q ss_pred CceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
++|...|-++||.+||||+|+..+.+.+.+
T Consensus 44 ~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 44 NRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 456778899999999999999999988754
No 355
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=84.72 E-value=0.45 Score=46.85 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.2
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+++|+|+.++|||+||+.|.+.+
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998764
No 356
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=84.71 E-value=0.56 Score=43.45 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=29.4
Q ss_pred eCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhh
Q psy5031 37 LDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 37 ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.--..|+.+|.- .+ .+=.++.|+|+.++|||+|+++++...
T Consensus 115 TG~~~LD~lL~g-gi--~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 115 TGSKSLDKLLGG-GI--ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp CSCHHHHHHHTS-SE--ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHhcC-CC--CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334567776631 11 123688999999999999999998764
No 357
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=84.68 E-value=0.47 Score=40.03 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=20.9
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+|.|.|+.++|||++.+.|...+.
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 577899999999999999988753
No 358
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.68 E-value=0.4 Score=43.63 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=24.4
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+...+.++||.++|||+|++.+.+.+.+
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 34567889999999999999999988643
No 359
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=84.48 E-value=0.46 Score=47.65 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=21.0
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|++.+
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998764
No 360
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=84.48 E-value=0.55 Score=41.84 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.7
Q ss_pred EEEecccccChhHHHHHHHHhhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
|.++||.+||||+|++.+...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC
Confidence 88999999999999999987643
No 361
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=84.47 E-value=0.67 Score=40.60 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.2
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+|.++|+.++|||++++.|...+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998753
No 362
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=84.43 E-value=0.5 Score=44.65 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.5
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|+|+|...+|||+|+|+|.+.
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3789999999999999999864
No 363
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=84.40 E-value=0.64 Score=45.76 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=23.7
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+..+|+|+|+.++|||+|+|.|+.++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677999999999999999999998764
No 364
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=84.31 E-value=0.41 Score=47.31 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+||+.|.+.+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999997654
No 365
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=84.29 E-value=0.49 Score=42.29 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.9
Q ss_pred EEEEEEecccccChhHHHHHHHH
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
.-+|+|+|+.+||||++++.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 366
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=84.10 E-value=0.67 Score=39.51 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=20.6
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.|.+.|+.+||||++++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998764
No 367
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=84.08 E-value=0.51 Score=45.73 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.9
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|+|+|+..+|||+|+|+|++.
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3789999999999999999876
No 368
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=84.04 E-value=0.55 Score=39.23 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|.|+.++|||++...|.+.+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68899999999999999998754
No 369
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=83.85 E-value=0.55 Score=41.79 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.5
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+|.|+|+.++|||++++.|.+.+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 67889999999999999998854
No 370
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=83.83 E-value=0.67 Score=38.92 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.3
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.|.|.|+.+||||++++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37889999999999999998864
No 371
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=83.66 E-value=0.64 Score=42.20 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=22.3
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.||+++|+.++|||+++..|...+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4888999999999999999998764
No 372
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=83.61 E-value=0.69 Score=38.13 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=20.5
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.|-+.|+.+||||+|+..+...+.
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 456889999999999999988753
No 373
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=83.49 E-value=0.7 Score=39.06 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.5
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.|.+.|+.+||||++.+.|...+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999998865
No 374
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=83.46 E-value=0.54 Score=47.23 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.9
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
-+++|+|+.++|||+||+.|.+.+.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4699999999999999999987643
No 375
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=83.39 E-value=0.8 Score=41.95 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=24.4
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+-.||.|+|+.++|||+++..|+..+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 3457999999999999999999998764
No 376
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=83.36 E-value=0.54 Score=44.58 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.7
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.|+|+|....|||+|+|+|.+.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 377
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=83.20 E-value=0.7 Score=40.64 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=26.8
Q ss_pred HHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhh
Q psy5031 39 YEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 39 ~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
++.++.+.. +.. .+|.|.|+.|+|||+|++.+.+.+
T Consensus 19 ~~el~~L~~---l~~---~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 19 EKEIEKLKG---LRA---PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHHHHHH---TCS---SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHH---hcC---CcEEEECCCCCCHHHHHHHHHHhc
Confidence 445555432 333 488899999999999999998764
No 378
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=83.05 E-value=0.69 Score=39.65 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.0
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+|.|.|.-++|||++++.|.+.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3688999999999999999998864
No 379
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=82.99 E-value=0.78 Score=41.15 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=21.7
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+.|+|+.++|||+|++.+.+.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999987643
No 380
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=82.93 E-value=0.62 Score=44.39 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.2
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.-.|+|+|..++|||+|+|+|++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 347899999999999999999864
No 381
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=82.92 E-value=0.37 Score=47.81 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.1
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+|+.++|||+|++.|++...
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCcc
Confidence 688999999999999999987643
No 382
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=82.86 E-value=0.53 Score=41.05 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=20.7
Q ss_pred CceEEEEEEeccc---------ccChhHHHHHHHH
Q psy5031 53 DKHVVVVSVAGAF---------RKGKSFLLDFLLR 78 (281)
Q Consensus 53 ~~pVaVVsI~G~~---------RtGKSfLLN~Ll~ 78 (281)
..+-.-|.|+|.. ++|||.|+|+|.+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 3344557788888 9999999999975
No 383
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=82.83 E-value=0.31 Score=48.11 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.0
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+++|+||.++|||+|++.|++...
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 688999999999999999987643
No 384
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=82.80 E-value=0.51 Score=44.76 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=18.6
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|+|...+|||+|+|+|.+.
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~ 23 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLV 23 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 789999999999999999754
No 385
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=82.72 E-value=0.81 Score=39.72 Aligned_cols=24 Identities=21% Similarity=-0.086 Sum_probs=21.3
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-+|.|.|+.+||||++..+|...+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999998754
No 386
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=82.68 E-value=0.55 Score=44.96 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.9
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|+|+|+..+|||+|+|.|.+.
T Consensus 24 kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CEEEECCSSSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999754
No 387
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=82.59 E-value=0.72 Score=43.64 Aligned_cols=24 Identities=25% Similarity=0.229 Sum_probs=21.4
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+|+|+||.++|||+|++.|.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 378899999999999999999764
No 388
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=82.57 E-value=0.77 Score=43.11 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=23.2
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
-+|.|+||..||||+|...|...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~ 33 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNG 33 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTE
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCC
Confidence 37999999999999999999988654
No 389
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=82.55 E-value=0.8 Score=40.25 Aligned_cols=23 Identities=35% Similarity=0.325 Sum_probs=20.6
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+|.|.|+-|+|||+|++.+++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 47888999999999999999875
No 390
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=82.50 E-value=0.65 Score=43.96 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.4
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..|+|+|....|||+|+|+|.+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999764
No 391
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=82.31 E-value=0.36 Score=39.58 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=21.1
Q ss_pred ceEEEEEEecccccChhHHHHHHHH
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
.+..-|.|+|+.++|||+|+|+|+.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3566778999999999999999853
No 392
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.25 E-value=0.76 Score=42.49 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=20.1
Q ss_pred EEEecccccChhHHHHHHHHhhhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+.|+|+.++|||+|++.++..+..
T Consensus 38 ~~i~G~~G~GKs~~~~~~~~~~~~ 61 (392)
T 4ag6_A 38 WTILAKPGAGKSFTAKMLLLREYM 61 (392)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHH
Confidence 567899999999999999986543
No 393
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=82.18 E-value=0.62 Score=41.49 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=18.6
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|.++|..++|||+|+|.|.+.
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred heEEeCCCCCCHHHHHHHHhcc
Confidence 4677888999999999999754
No 394
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=82.11 E-value=1.9 Score=33.15 Aligned_cols=19 Identities=37% Similarity=0.329 Sum_probs=16.1
Q ss_pred cchhhccCchhHHHHHHhh
Q psy5031 133 KVSAFRKGKSFLLDFLLRY 151 (281)
Q Consensus 133 ~~~~~r~gkS~Lln~l~~~ 151 (281)
.+|.-..|||.|+|.|.+.
T Consensus 6 v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 6 IVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EECCTTSSHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4678889999999999874
No 395
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=81.95 E-value=0.92 Score=38.74 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.|.+.|+.+||||++.+.|...+
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58889999999999999998875
No 396
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=81.88 E-value=0.77 Score=42.86 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=19.2
Q ss_pred EEEecccccChhHHHHHHHHhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l 80 (281)
|.++|..++|||+|+|.|++..
T Consensus 165 i~~vG~~nvGKStliN~L~~~~ 186 (369)
T 3ec1_A 165 VYVVGCTNVGKSTFINRIIEEA 186 (369)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCchHHHHHHHHhhc
Confidence 5678999999999999999863
No 397
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=81.83 E-value=0.72 Score=41.55 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.0
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-|.++|..++|||.|+|+|+..
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3678999999999999998754
No 398
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=81.82 E-value=0.37 Score=44.83 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.7
Q ss_pred EEEEEEecccccChhHHHHHHHH
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
++-|+++|...+|||+|+|+|..
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~ 180 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSS 180 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEE
T ss_pred cCeeeeeCCCCCCHHHHHHHHHc
Confidence 66799999999999999999854
No 399
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=81.60 E-value=0.45 Score=47.65 Aligned_cols=20 Identities=40% Similarity=0.522 Sum_probs=18.0
Q ss_pred EEEEecccccChhHHHHHHH
Q psy5031 58 VVSVAGAFRKGKSFLLDFLL 77 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll 77 (281)
+++|+||.++|||+|+|.++
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 68999999999999998765
No 400
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=81.40 E-value=0.89 Score=39.09 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.4
Q ss_pred EEEecccccChhHHHHHHHHhhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
|-++|+.+||||+|+..+.+.+.
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 66999999999999999988754
No 401
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=81.31 E-value=3.2 Score=33.21 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=16.5
Q ss_pred cchhhccCchhHHHHHHhh
Q psy5031 133 KVSAFRKGKSFLLDFLLRY 151 (281)
Q Consensus 133 ~~~~~r~gkS~Lln~l~~~ 151 (281)
.+|.-..|||.|+|.|++.
T Consensus 28 v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 28 LAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEBTTSSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5788999999999999774
No 402
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=81.23 E-value=0.94 Score=38.50 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=22.0
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
||+|.|+++||||++...|...|.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999998754
No 403
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=81.19 E-value=1.8 Score=39.78 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=24.8
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+-.||+|+|+.++|||+++..|...+..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45578999999999999999999987643
No 404
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=81.11 E-value=0.74 Score=41.10 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=21.7
Q ss_pred EEEEEEecccccChhHHHHHHHHhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
...+-++||.++|||+|+..+.+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 34566889999999999999998764
No 405
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=81.08 E-value=0.77 Score=44.60 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=24.7
Q ss_pred CHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHH
Q psy5031 38 DYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFL 76 (281)
Q Consensus 38 n~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~L 76 (281)
...+|+.+..- .+. +=.+++|+|+.++|||+|++.|
T Consensus 24 g~~~Ld~i~~G-~i~--~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 24 MIEGFDDISHG-GLP--IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp CCTTHHHHTTS-SEE--TTSEEEEEESTTSSHHHHHHHH
T ss_pred CchhHHHhcCC-CCC--CCeEEEEEcCCCCCHHHHHHHH
Confidence 34577776530 111 1137888999999999999996
No 406
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=80.35 E-value=0.84 Score=43.88 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.0
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+..+|+|+|+.++|||++++.|..++.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3446899999999999999999998764
No 407
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=80.26 E-value=1.1 Score=36.34 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=19.9
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+..|+||.++|||.|+..|.--+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999986544
No 408
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=80.22 E-value=0.87 Score=43.36 Aligned_cols=41 Identities=27% Similarity=0.277 Sum_probs=27.2
Q ss_pred EeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHh
Q psy5031 36 ILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 36 ~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..--..|..+|.- -+. +=.++.|+|+.++|||+|+.+|+-.
T Consensus 161 ~TG~~~LD~lLgG-GI~--~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 161 TTGSKNLDTLLGG-GVE--TGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp CCSCHHHHHHTTT-SEE--TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCChhHHHHhcC-CcC--CCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3344567766521 111 1248899999999999999988643
No 409
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=80.10 E-value=1.1 Score=39.49 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=20.6
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+|.|+|+.+||||++.+.|.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36889999999999999999874
No 410
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=80.02 E-value=0.83 Score=43.23 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=20.7
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..-|+++|....|||+|+|+|++.
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCC
Confidence 346789999999999999999864
No 411
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=79.80 E-value=0.94 Score=39.76 Aligned_cols=23 Identities=26% Similarity=0.172 Sum_probs=19.6
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.-|.|+|..++|||+|+|++...
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~ 178 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTN 178 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCChHHHHHHHHhC
Confidence 45778899999999999999754
No 412
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=79.70 E-value=0.54 Score=45.73 Aligned_cols=21 Identities=43% Similarity=0.475 Sum_probs=18.2
Q ss_pred EEEecccccChhHHHHHHHHh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~ 79 (281)
|+|+|+..+|||+|+|+|++.
T Consensus 236 V~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 236 TVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEECCTTSSHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 889999999999999999764
No 413
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=79.70 E-value=0.94 Score=42.29 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=18.8
Q ss_pred EEEecccccChhHHHHHHHHhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l 80 (281)
|.++|...+|||+|+|.|++..
T Consensus 163 i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 163 VYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp EEEEEBTTSSHHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHhhh
Confidence 5677888899999999998763
No 414
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=79.69 E-value=1.7 Score=37.82 Aligned_cols=46 Identities=20% Similarity=0.108 Sum_probs=32.8
Q ss_pred EEeCHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 35 FILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 35 l~ln~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+.-++++++.+.. .+.......+-++||.++|||+++..+.+.+.+
T Consensus 19 ~~g~~~~~~~l~~--~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 64 (319)
T 2chq_A 19 VVGQDEVIQRLKG--YVERKNIPHLLFSGPPGTGKTATAIALARDLFG 64 (319)
T ss_dssp SCSCHHHHHHHHT--TTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHH--HHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC
Confidence 3446677776654 233334434788999999999999999988644
No 415
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=79.60 E-value=0.52 Score=41.10 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=23.6
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
++-.+|.|.|.-++|||++++.|.+++.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999988763
No 416
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=79.27 E-value=1.5 Score=41.10 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=24.2
Q ss_pred CCceEEEEEEecccccChhHHHHHHHH
Q psy5031 52 KDKHVVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 52 ~~~pVaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
..++...|+|+|...+|||+|+|+|.+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g 32 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTG 32 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhC
Confidence 357889999999999999999999974
No 417
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=79.17 E-value=1.2 Score=41.80 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.3
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+|.|+||..+|||.|...|+..+.+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCcc
Confidence 6789999999999999999987654
No 418
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=79.14 E-value=1 Score=39.69 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=17.3
Q ss_pred cchhhccCchhHHHHHHhh
Q psy5031 133 KVSAFRKGKSFLLDFLLRY 151 (281)
Q Consensus 133 ~~~~~r~gkS~Lln~l~~~ 151 (281)
++|....|||.|+|.|++.
T Consensus 29 vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 29 VVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp EEECSSSSHHHHHHHHHTS
T ss_pred EEcCCCCCHHHHHHHHHCC
Confidence 5799999999999999885
No 419
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=78.91 E-value=0.87 Score=45.25 Aligned_cols=25 Identities=28% Similarity=0.183 Sum_probs=22.6
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+|.++|+.++|||+|++.|.+.+.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 5788999999999999999998865
No 420
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=78.58 E-value=1.5 Score=43.59 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=24.4
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+++.-|+|+|....|||+|+|+|+..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHH
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHH
Confidence 567888999999999999999999865
No 421
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=78.50 E-value=0.71 Score=44.99 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=20.6
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
..|+|+|...+|||+|+|+|++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~ 266 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNE 266 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCC
Confidence 46789999999999999999876
No 422
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=78.37 E-value=1.5 Score=41.03 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=23.7
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++..-|+|+|....|||+|+|+|+..
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhh
Confidence 467788999999999999999999875
No 423
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=78.30 E-value=2.3 Score=38.89 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.9
Q ss_pred cchhhccCchhHHHHHHhh
Q psy5031 133 KVSAFRKGKSFLLDFLLRY 151 (281)
Q Consensus 133 ~~~~~r~gkS~Lln~l~~~ 151 (281)
++|....|||.|+|.|.+.
T Consensus 36 vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 36 VVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp EECBTTSSHHHHHHTTTTS
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5799999999999999874
No 424
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=78.15 E-value=1.4 Score=41.66 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=23.0
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++..-|+++|...+|||+|+|+|+..
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 356677899999999999999999865
No 425
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=78.06 E-value=1.3 Score=41.24 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=24.8
Q ss_pred EEEEecccccChhHHHHHHHHhhhhcccccC
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNFTYIEEA 88 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~ 88 (281)
+|.|+||..+|||.|...|...+.+..++.|
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~~~iis~D 42 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILPVELISVD 42 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEECC
T ss_pred EEEEECCCccCHHHHHHHHHHhCCCcEEecc
Confidence 6789999999999999999988654333443
No 426
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=77.99 E-value=1.3 Score=38.65 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=24.1
Q ss_pred CceEEEEEEecccccChhHHHHHHHHhh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
..|-.||+|+|..||||+|..+.+...+
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 3466799999999999999999998744
No 427
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=77.90 E-value=0.23 Score=43.84 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.5
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+++|+||.++|||+||+.|...+..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccccc
Confidence 5578999999999999999887653
No 428
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=77.79 E-value=1.4 Score=41.38 Aligned_cols=45 Identities=16% Similarity=0.013 Sum_probs=31.2
Q ss_pred eEEeCHHHHHHHHcccCCCCc-eEEEEEEecccccChhHHHHHHHHhhh
Q psy5031 34 KFILDYEALERILLQDHVKDK-HVVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 34 ~l~ln~eal~~il~~~~~~~~-pVaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+..--..|+.+|- +..- +=.++.|+|+.++|||+|+.+++..+.
T Consensus 41 ~i~TG~~~LD~~Lg---~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 41 VIPTGSLAIDIATG---VGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp EECCSCHHHHHHTS---SSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred eecCCCHHHHHHhc---cCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33444467887653 1111 125899999999999999999987653
No 429
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=77.66 E-value=1.2 Score=41.45 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=20.7
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+..|+|+.++|||+|++.+.--+++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al~g 49 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFALFG 49 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4568999999999999999765544
No 430
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=77.64 E-value=1.2 Score=43.23 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.5
Q ss_pred EEEEEecccccChhHHHHHHHHhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.++.|+|+.++|||+|+..|+...
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 478899999999999999998764
No 431
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=77.48 E-value=1.6 Score=41.98 Aligned_cols=27 Identities=30% Similarity=0.233 Sum_probs=23.3
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.++..-|+|+|....|||+|+|+|+..
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHh
Confidence 456677789999999999999999876
No 432
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=77.38 E-value=1.4 Score=42.54 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=24.4
Q ss_pred eEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+-.||.++|+.++|||++++.|..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3478999999999999999999988754
No 433
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=77.33 E-value=1.8 Score=41.46 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=23.2
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++..-|+|+|....|||+|+|+|+..
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHH
Confidence 456677889999999999999999865
No 434
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=77.13 E-value=1.3 Score=39.41 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=23.4
Q ss_pred eEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.-..|-|.||.++|||+|++.+.+.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4456789999999999999999987643
No 435
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=77.07 E-value=1.2 Score=47.42 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=19.5
Q ss_pred EEEEecccccChhHHHHHHHH
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~ 78 (281)
+++|+|+.++|||+||+.|.+
T Consensus 463 ~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999984
No 436
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=77.03 E-value=3.3 Score=37.81 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=17.2
Q ss_pred cchhhccCchhHHHHHHhh
Q psy5031 133 KVSAFRKGKSFLLDFLLRY 151 (281)
Q Consensus 133 ~~~~~r~gkS~Lln~l~~~ 151 (281)
++|...+|||.|+|.|.+.
T Consensus 39 vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 39 VVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EECBTTSSHHHHHHHHHTS
T ss_pred EECCCCCcHHHHHHHHhCC
Confidence 5799999999999999884
No 437
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=76.89 E-value=4.2 Score=35.25 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=17.2
Q ss_pred cchhhccCchhHHHHHHhh
Q psy5031 133 KVSAFRKGKSFLLDFLLRY 151 (281)
Q Consensus 133 ~~~~~r~gkS~Lln~l~~~ 151 (281)
++|....|||.|+|.|++.
T Consensus 31 vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 31 VVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEBTTSCHHHHHHHHHTS
T ss_pred EEeCCCCCHHHHHHHHHCC
Confidence 5799999999999999875
No 438
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=76.84 E-value=0.88 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.|+|+|+.++|||+|++.|+|..
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCc
Confidence 47788999999999999998864
No 439
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=76.82 E-value=1.7 Score=39.41 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.7
Q ss_pred EEEEEEecccccChhHHHHHHHHhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
-.+|+++|+.++|||++++.|...+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788889999999999999998764
No 440
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=76.65 E-value=1.9 Score=37.12 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=22.9
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+|.+.|+-++|||++++.|..++..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999999988754
No 441
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=76.57 E-value=0.64 Score=42.97 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.5
Q ss_pred EEEEecccccChhHHHHHHHHh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
+++|+|+.++|||+||+.|..-
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 7889999999999999988544
No 442
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=76.52 E-value=1.2 Score=41.58 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.1
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.++-..|+++|...+|||+|+|+|.+.
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 456668899999999999999999754
No 443
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=76.45 E-value=1.6 Score=42.18 Aligned_cols=30 Identities=33% Similarity=0.274 Sum_probs=24.5
Q ss_pred EEEEecccccChhHHHHHHHHhhhhccccc
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNFTYIEE 87 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~ 87 (281)
+|.|+||..+|||+|...|+..+.+...+.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 688999999999999999998875533333
No 444
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=76.44 E-value=1.5 Score=39.69 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.1
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
..|-+.|+.+||||+|+..+...+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999988754
No 445
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=76.37 E-value=0.99 Score=49.12 Aligned_cols=24 Identities=38% Similarity=0.665 Sum_probs=20.5
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.++|+|+.++|||+|++.|++...
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSC
T ss_pred EEEEEecCCCcHHHHHHHhccccc
Confidence 577889999999999999998643
No 446
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=76.14 E-value=1.5 Score=37.16 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=20.6
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+..|+|+.++|||+|+..|.--+.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4778899999999999999864443
No 447
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=76.12 E-value=2.8 Score=32.38 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=16.3
Q ss_pred cchhhccCchhHHHHHHhh
Q psy5031 133 KVSAFRKGKSFLLDFLLRY 151 (281)
Q Consensus 133 ~~~~~r~gkS~Lln~l~~~ 151 (281)
.+|.-..|||.|+|.|++.
T Consensus 8 v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 8 LIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEESTTSSHHHHHHHHHHC
T ss_pred EECcCCCCHHHHHHHHHhC
Confidence 4688899999999999863
No 448
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.08 E-value=0.92 Score=40.30 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=21.6
Q ss_pred EEEecccccChhHHHHHHHHhhhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+-+.||.++|||+|+..+.+.+.+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 778999999999999999998754
No 449
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=76.08 E-value=3.7 Score=31.60 Aligned_cols=18 Identities=28% Similarity=0.143 Sum_probs=15.9
Q ss_pred cchhhccCchhHHHHHHh
Q psy5031 133 KVSAFRKGKSFLLDFLLR 150 (281)
Q Consensus 133 ~~~~~r~gkS~Lln~l~~ 150 (281)
.+|.-..|||.|+|.|++
T Consensus 8 v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 8 VFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EECCTTSSHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHc
Confidence 568889999999999976
No 450
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=75.40 E-value=6.7 Score=31.89 Aligned_cols=28 Identities=21% Similarity=-0.002 Sum_probs=20.3
Q ss_pred eeeceEEeecCCcccchhhccCchhHHHHHHhh
Q psy5031 119 MWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRY 151 (281)
Q Consensus 119 ~~s~~~~~~~~~~~~~~~~r~gkS~Lln~l~~~ 151 (281)
|-...+.|. .+|.-..|||.|+|.|.+.
T Consensus 21 m~~~~~ki~-----vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 21 MAAIRKKLV-----IVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp -CCEEEEEE-----EEESTTSSHHHHHHHHHHS
T ss_pred CcccceEEE-----EECCCCCCHHHHHHHHHhC
Confidence 444444443 5789999999999999874
No 451
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=75.30 E-value=1.8 Score=40.35 Aligned_cols=24 Identities=38% Similarity=0.268 Sum_probs=20.1
Q ss_pred EEEecccccChhHHHHHHHHhhhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+.|+|+.|+|||++++.++.++..
T Consensus 56 ~~i~G~tGsGKs~~~~~li~~~~~ 79 (437)
T 1e9r_A 56 LLVNGATGTGKSVLLRELAYTGLL 79 (437)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 568899999999999998887543
No 452
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=75.28 E-value=0.82 Score=48.71 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.8
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|.+.+
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999997654
No 453
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=75.22 E-value=1.6 Score=42.86 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.8
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+-.|+|+|...+|||+|+|+|+.+
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~ 36 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLF 36 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhh
Confidence 4667899999999999999999854
No 454
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=75.22 E-value=1.7 Score=40.77 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.8
Q ss_pred CceEEEEEEecccccChhHHHHHHHH
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~ 78 (281)
.++...|+|+|...+|||+|+|+|.+
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g 30 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTG 30 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHS
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhC
Confidence 45677889999999999999999963
No 455
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=75.20 E-value=1.1 Score=40.83 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=18.5
Q ss_pred EEEEecccccChhHHHHHHHH
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~ 78 (281)
-|.|+|...+|||+|+|+|..
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCS
T ss_pred eEEEECCCCccHHHHHHHHhC
Confidence 578999999999999999853
No 456
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=75.16 E-value=4.9 Score=30.49 Aligned_cols=19 Identities=37% Similarity=0.169 Sum_probs=16.1
Q ss_pred cchhhccCchhHHHHHHhh
Q psy5031 133 KVSAFRKGKSFLLDFLLRY 151 (281)
Q Consensus 133 ~~~~~r~gkS~Lln~l~~~ 151 (281)
.+|.-..|||.|+|.|++.
T Consensus 8 v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 8 VVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEESTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 4678889999999999874
No 457
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=74.95 E-value=1.8 Score=40.34 Aligned_cols=26 Identities=19% Similarity=0.140 Sum_probs=22.8
Q ss_pred EEEEecccccChhHHHHHHHHhhhhc
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNFT 83 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~~ 83 (281)
+|.|+||.++|||+|...|...+...
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~ 32 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCE 32 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 68899999999999999999886543
No 458
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=74.85 E-value=1.8 Score=37.80 Aligned_cols=27 Identities=15% Similarity=0.077 Sum_probs=22.3
Q ss_pred EEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
-.-|-+.||.+||||+|+..+.+.+.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~ 80 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSA 80 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 345678999999999999999987543
No 459
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=74.84 E-value=5.5 Score=30.39 Aligned_cols=19 Identities=26% Similarity=0.030 Sum_probs=16.3
Q ss_pred cchhhccCchhHHHHHHhh
Q psy5031 133 KVSAFRKGKSFLLDFLLRY 151 (281)
Q Consensus 133 ~~~~~r~gkS~Lln~l~~~ 151 (281)
.+|.-..|||.|+|.|++.
T Consensus 9 v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 9 MVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 5688899999999999873
No 460
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=74.79 E-value=2.2 Score=39.84 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.1
Q ss_pred eEEEEEEecccccChhHHHHHHHHhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
|-.-|+++|...+|||+|+|+|+...
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~ 27 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKIL 27 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChh
Confidence 34568999999999999999998753
No 461
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=74.78 E-value=1.2 Score=46.21 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.6
Q ss_pred eEEEEEEecccccChhHHHHHHHHh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
++--|+|+|.+.+|||+|+|.|++.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~ 74 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGR 74 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3447889999999999999999864
No 462
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=74.76 E-value=1.9 Score=36.61 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=20.2
Q ss_pred EEEecccccChhHHHHHHHHhhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
|-+.||.+||||+|+..+.+.+.
T Consensus 42 vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45999999999999999988754
No 463
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=74.74 E-value=1.6 Score=45.22 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=17.4
Q ss_pred cchhhccCchhHHHHHHhh
Q psy5031 133 KVSAFRKGKSFLLDFLLRY 151 (281)
Q Consensus 133 ~~~~~r~gkS~Lln~l~~~ 151 (281)
++|.+.+|||.|+|.|.+.
T Consensus 56 vvG~~saGKSSllnaL~g~ 74 (772)
T 3zvr_A 56 VVGGQSAGKSSVLENFVGR 74 (772)
T ss_dssp EEECTTTCHHHHHHHHHSS
T ss_pred EECCCCCcHHHHHHHHhCC
Confidence 5899999999999999885
No 464
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=74.62 E-value=3.1 Score=32.51 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=16.6
Q ss_pred cchhhccCchhHHHHHHhh
Q psy5031 133 KVSAFRKGKSFLLDFLLRY 151 (281)
Q Consensus 133 ~~~~~r~gkS~Lln~l~~~ 151 (281)
.+|.-..|||.|+|.|++.
T Consensus 13 v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 13 ILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 5788999999999999874
No 465
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=74.54 E-value=1.1 Score=48.70 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+|+.++|||+|++.|++..
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998764
No 466
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=74.52 E-value=1.9 Score=38.30 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.9
Q ss_pred EEEEEecccccChhHHHHHHHHh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-+|++.|..+||||++.+.|...
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~ 24 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999999874
No 467
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=74.47 E-value=2 Score=35.90 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=18.5
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
++-++|+.++|||++|-+++...
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56689999999999986666543
No 468
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=74.45 E-value=1.8 Score=37.87 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=20.0
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+|.+.|+-++|||++++.|.+++..
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47889999999999999999998754
No 469
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=74.40 E-value=1.7 Score=40.83 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.1
Q ss_pred EEEEecccccChhHHHHHHHHhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
+++|+||.++|||.||+.+..-+
T Consensus 28 ~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhh
Confidence 67799999999999999997654
No 470
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=74.30 E-value=1.9 Score=37.28 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=21.2
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
-|-+.||.+||||+|+..+...+..
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~~~ 77 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATETNA 77 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3668899999999999999887543
No 471
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=74.13 E-value=2.1 Score=40.79 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=23.2
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.++..-|+|+|....|||+|+|+|+..
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 456677889999999999999999765
No 472
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=74.12 E-value=1.6 Score=41.22 Aligned_cols=25 Identities=28% Similarity=0.142 Sum_probs=21.6
Q ss_pred EEEEEEecccccChhHHHHHHHHhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
-.+|-++|+.++|||+++..|+..+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578899999999999999998764
No 473
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=74.04 E-value=2.1 Score=43.21 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.6
Q ss_pred ceEEEEEEecccccChhHHHHHHHHhh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRYM 80 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~l 80 (281)
.+...|+|+|...+|||+|+++|+.+.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhc
Confidence 357789999999999999999999763
No 474
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=74.03 E-value=1.6 Score=40.95 Aligned_cols=31 Identities=26% Similarity=0.199 Sum_probs=25.2
Q ss_pred EEEEecccccChhHHHHHHHHhhhhcccccC
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNFTYIEEA 88 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~~~~~~~ 88 (281)
+|.|+||..+|||.|...|+..+.+..+..|
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~D 72 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSD 72 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEccc
Confidence 7889999999999999999988765433333
No 475
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=73.96 E-value=1.6 Score=42.27 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=21.6
Q ss_pred ceEEEEEEecccccChhHHHHHHHHh
Q psy5031 54 KHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 54 ~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.+-.-|+++|..++|||+|+|+|...
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~ 64 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGE 64 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999999754
No 476
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=73.77 E-value=2 Score=37.38 Aligned_cols=26 Identities=8% Similarity=0.276 Sum_probs=22.7
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
-||+|.|+++||||++...|...+..
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~ 40 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGI 40 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCC
Confidence 48999999999999999999886533
No 477
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=73.76 E-value=5.4 Score=31.38 Aligned_cols=19 Identities=37% Similarity=0.181 Sum_probs=16.5
Q ss_pred cchhhccCchhHHHHHHhh
Q psy5031 133 KVSAFRKGKSFLLDFLLRY 151 (281)
Q Consensus 133 ~~~~~r~gkS~Lln~l~~~ 151 (281)
.+|.-..|||.|+|.|++.
T Consensus 9 v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 9 VVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 5788899999999999863
No 478
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=73.75 E-value=2.4 Score=37.07 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=24.3
Q ss_pred eEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 55 HVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 55 pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+=.+|.+.|+-++|||++++.|.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3467889999999999999999998765
No 479
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=73.70 E-value=2.2 Score=41.45 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.1
Q ss_pred EEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
-.||.++|+.++|||++++.|+.++..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 479999999999999999999988653
No 480
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=73.56 E-value=1.7 Score=39.26 Aligned_cols=21 Identities=29% Similarity=0.424 Sum_probs=19.1
Q ss_pred EEEEecccccChhHHHHHHHH
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLR 78 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~ 78 (281)
+.+|+|+.++|||.||..|.-
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHH
Confidence 788999999999999999863
No 481
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=73.49 E-value=2.5 Score=36.14 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=22.0
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
..|++-|.=++|||++++.|..++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3688999999999999999998874
No 482
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=73.43 E-value=2 Score=38.03 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=29.3
Q ss_pred HHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhhc
Q psy5031 39 YEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFT 83 (281)
Q Consensus 39 ~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~~ 83 (281)
-++++.++.. + .++ .-+-++||.+||||+++..|++.+...
T Consensus 45 ~~~l~~~~~~--i-Pkk-n~ili~GPPGtGKTt~a~ala~~l~g~ 85 (212)
T 1tue_A 45 LGALKSFLKG--T-PKK-NCLVFCGPANTGKSYFGMSFIHFIQGA 85 (212)
T ss_dssp HHHHHHHHHT--C-TTC-SEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHhc--C-Ccc-cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4567766642 1 221 237899999999999999999987653
No 483
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=73.38 E-value=2.1 Score=38.46 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=22.9
Q ss_pred EEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
-..|-|.|+.++|||+|+..+.+.+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 347889999999999999999987643
No 484
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=73.37 E-value=1.6 Score=38.13 Aligned_cols=43 Identities=21% Similarity=0.064 Sum_probs=28.6
Q ss_pred CHHHHHHHHcccCCCCceEEEEEEecccccChhHHHHHHHHhhhh
Q psy5031 38 DYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 38 n~eal~~il~~~~~~~~pVaVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+++++.+... +....+..+-+.||.++|||+++..+.+.+.+
T Consensus 30 ~~~~~~~l~~~--l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 30 QEHIVKRLKHY--VKTGSMPHLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp CHHHHHHHHHH--HHHTCCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHH--HHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 45555544321 12222223788999999999999999988654
No 485
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=73.37 E-value=2.1 Score=37.73 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=22.7
Q ss_pred EEEEEecccccChhHHHHHHHHhhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.+|.|.|+-++|||++++.|..++..
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 37888999999999999999998754
No 486
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=73.33 E-value=4.6 Score=31.95 Aligned_cols=67 Identities=12% Similarity=-0.004 Sum_probs=36.8
Q ss_pred cchhhccCchhHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccCCCCCCcccceEeeecceeecCCCCCceEEEEEe
Q psy5031 133 KVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLD 212 (281)
Q Consensus 133 ~~~~~r~gkS~Lln~l~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~~~~~~~~TkGIWmWs~P~~~~~~~g~~v~VlLlD 212 (281)
.+|.-..|||.|+|+|.+.....|.. ...++ ......|.|+=.....+ ...+++.+.+.+.|
T Consensus 19 vvG~~~~GKssL~~~l~~~~~~~~~~-------------~~~~~---~~~~~~t~~~~~~~~~~--~~~~~~~~~~~i~D 80 (198)
T 3t1o_A 19 YYGPGLSGKTTNLKWIYSKVPEGRKG-------------EMVSL---ATEDERTLFFDFLPLDI--GEVKGFKTRFHLYT 80 (198)
T ss_dssp EECSTTSSHHHHHHHHHHTSCGGGBC-------------CCEEE---ECSSCEEEEEEECCSSC--CCSSSCEEEEEEEE
T ss_pred EECCCCCCHHHHHHHHHhhccccccc-------------ccccc---ccccccceeeeeccccc--ccccCCceEEEEEe
Confidence 57889999999999887754211110 00000 01122355543332222 12256678899999
Q ss_pred cCCCC
Q psy5031 213 TQGTF 217 (281)
Q Consensus 213 TEG~~ 217 (281)
|.|..
T Consensus 81 t~G~~ 85 (198)
T 3t1o_A 81 VPGQV 85 (198)
T ss_dssp CCSCC
T ss_pred CCChH
Confidence 99964
No 487
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=73.19 E-value=2.2 Score=38.48 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=22.7
Q ss_pred EEEEEEecccccChhHHHHHHHHhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
-.+|+++|+.++|||+++..|...+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35888889999999999999998764
No 488
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=73.15 E-value=2.2 Score=36.82 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=22.5
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+|.+.|+-++|||++++.|..++..
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6888999999999999999998765
No 489
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=73.09 E-value=1.8 Score=41.12 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=20.4
Q ss_pred EEEEEEecccccChhHHHHHHHHh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
-.-|.|+|...+|||+|+|+|...
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~ 345 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLG 345 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcC
Confidence 345679999999999999999754
No 490
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=73.07 E-value=2.1 Score=38.14 Aligned_cols=26 Identities=19% Similarity=0.077 Sum_probs=21.9
Q ss_pred EEEEEEecccccChhHHHHHHHHhhh
Q psy5031 56 VVVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 56 VaVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
-..|-++||.+||||+|+..+...+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC
Confidence 34567899999999999999998754
No 491
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.10 E-value=1.5 Score=38.15 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=21.6
Q ss_pred EEEecccccChhHHHHHHHHhhhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
+-++|+.++|||+++..+.+.+.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC
Confidence 778999999999999999988754
No 492
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=71.96 E-value=6.5 Score=31.53 Aligned_cols=19 Identities=26% Similarity=0.030 Sum_probs=16.5
Q ss_pred cchhhccCchhHHHHHHhh
Q psy5031 133 KVSAFRKGKSFLLDFLLRY 151 (281)
Q Consensus 133 ~~~~~r~gkS~Lln~l~~~ 151 (281)
.+|.-..|||.|+|.|++.
T Consensus 19 v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 19 MVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 5788999999999999863
No 493
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=71.84 E-value=2.4 Score=36.74 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=20.5
Q ss_pred EEEecccccChhHHHHHHHHhhhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
|-++|+.+||||+|+..+.+.+.+
T Consensus 53 vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 447899999999999999988643
No 494
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=71.79 E-value=1.6 Score=47.40 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.1
Q ss_pred EEEEecccccChhHHHHHHHHhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
+|+|+|+.++|||+|++.|++...
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 688999999999999999987643
No 495
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=71.58 E-value=1.7 Score=37.31 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=20.6
Q ss_pred EEEecccccChhHHHHHHHHhhhh
Q psy5031 59 VSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 59 VsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
|-++||.+||||+|+..+.+.+..
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 458999999999999999987543
No 496
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=71.48 E-value=8.7 Score=29.35 Aligned_cols=19 Identities=21% Similarity=0.036 Sum_probs=16.2
Q ss_pred cchhhccCchhHHHHHHhh
Q psy5031 133 KVSAFRKGKSFLLDFLLRY 151 (281)
Q Consensus 133 ~~~~~r~gkS~Lln~l~~~ 151 (281)
.+|.-..|||.|+|.|++.
T Consensus 8 v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 8 VLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EECSTTSSHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4688899999999999873
No 497
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=71.36 E-value=2.3 Score=38.77 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=20.2
Q ss_pred EEEEEecccccChhHHHHHHHHhhh
Q psy5031 57 VVVSVAGAFRKGKSFLLDFLLRYMN 81 (281)
Q Consensus 57 aVVsI~G~~RtGKSfLLN~Ll~~l~ 81 (281)
.+..|+||.++|||.||..+.--+.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4667999999999999998854443
No 498
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=71.07 E-value=1.9 Score=43.17 Aligned_cols=27 Identities=30% Similarity=0.233 Sum_probs=22.6
Q ss_pred CceEEEEEEecccccChhHHHHHHHHh
Q psy5031 53 DKHVVVVSVAGAFRKGKSFLLDFLLRY 79 (281)
Q Consensus 53 ~~pVaVVsI~G~~RtGKSfLLN~Ll~~ 79 (281)
.++..-|+|+|...+|||+|+|+|+..
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHh
Confidence 455667889999999999999999744
No 499
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=70.73 E-value=1.8 Score=43.31 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=15.0
Q ss_pred EEEEecccccChhHHH
Q psy5031 58 VVSVAGAFRKGKSFLL 73 (281)
Q Consensus 58 VVsI~G~~RtGKSfLL 73 (281)
+++|+||.++|||+||
T Consensus 46 ~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 46 LVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHh
Confidence 6899999999999997
No 500
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=70.64 E-value=3 Score=35.23 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.6
Q ss_pred EEEEecccccChhHHHHHHHHhhhh
Q psy5031 58 VVSVAGAFRKGKSFLLDFLLRYMNF 82 (281)
Q Consensus 58 VVsI~G~~RtGKSfLLN~Ll~~l~~ 82 (281)
.|++-|.=++|||+.++.|.++|..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999999865
Done!