RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5031
(281 letters)
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 93.2 bits (231), Expect = 5e-23
Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 26/132 (19%)
Query: 136 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 195
+R GKS+L++ L GFS + T GI MW
Sbjct: 40 LYRTGKSYLMNKLAGKKK---------------------GFSLGSTVQSHTKGIWMWCVP 78
Query: 196 YIATLPTGEKAAVILLDTQGTFDSE-STVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQ 254
+ P ++LLDT+G D E ++ + +FAL+ +LSS +YN I + +
Sbjct: 79 H----PKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMD 134
Query: 255 HLQLFTEYGRLA 266
L TE
Sbjct: 135 QLYYVTELTHRI 146
Score = 63.9 bits (155), Expect = 2e-12
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 26/100 (26%)
Query: 22 GAIQIVKSEEKHKFILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMN 81
G + +++ + + + EAL+ + + +VVV++ G +R GKS+L++ L
Sbjct: 3 GPMCLIE-NTNGRLMANPEALKIL----SAITQPMVVVAIVGLYRTGKSYLMNKLAGKKK 57
Query: 82 FTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWS 121
GFS + T GI MW
Sbjct: 58 ---------------------GFSLGSTVQSHTKGIWMWC 76
>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5
{Haemophilus influenzae [TaxId: 727]}
Length = 163
Score = 30.2 bits (67), Expect = 0.15
Identities = 9/88 (10%), Positives = 22/88 (25%), Gaps = 2/88 (2%)
Query: 35 FILDYEALERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWM 94
+ + + +K V+V S+ GAF S + + + +
Sbjct: 13 RTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILV 72
Query: 95 GPDDVPLEGFSWRGGSERDTTGILMWSH 122
+ + + I
Sbjct: 73 VSVNDT--FVMNAWKEDEKSENISFIPD 98
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 27.4 bits (60), Expect = 1.8
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 140 GKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSH----- 194
GKS L D L++ +A + E RG + + T L
Sbjct: 29 GKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQE----RGITIKSTAISLYSEMSDEDV 84
Query: 195 VYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSS 238
I G + L+D+ G D S V V + ++
Sbjct: 85 KEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 128
>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 179
Score = 27.0 bits (59), Expect = 2.3
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 42 LERILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIEEA 88
I + +K ++++S+ GAF S + +I+E
Sbjct: 31 FTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKEN 77
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 24.9 bits (54), Expect = 3.6
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 238 SIQIYNLSQNIQEDDLQHLQLFTEYGR 264
S+ + +L ++ E L + F+ G
Sbjct: 2 SLYVGDLHPDVTEAMLY--EKFSPAGP 26
>d1nyca_ b.61.2.2 (A:) Staphostatin B (SspC) {Staphylococcus
aureus [TaxId: 1280]}
Length = 111
Score = 25.4 bits (55), Expect = 4.7
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
Query: 1 MKKEVDLKMGGDFEEDSLPQYGAIQIVKSEEKHKF----------ILDYEALERILLQDH 50
++K + ++ G D + QY + I + ++ KF ILDY+ + IL+Q
Sbjct: 38 LQKSICIRHGDDTSHN---QYHILFIDTAHQRIKFSSFDNEEIIYILDYDDTQHILMQTS 94
Query: 51 VKD 53
K
Sbjct: 95 SKQ 97
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 24.6 bits (53), Expect = 5.8
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 237 SSIQIYNLSQNIQEDDLQHLQLFTEYGRL 265
+++ + L Q++ + +L LF G +
Sbjct: 3 TNLIVNYLPQDMTDRELY--ALFRAIGPI 29
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 24.5 bits (53), Expect = 6.9
Identities = 3/27 (11%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 237 SSIQIYNLSQNIQEDDLQHLQLFTEYG 263
++ ++ + + ++ Q F+ +G
Sbjct: 19 CTVYCGGIASGLTDQLMR--QTFSPFG 43
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 25.5 bits (55), Expect = 7.9
Identities = 6/60 (10%), Positives = 17/60 (28%), Gaps = 4/60 (6%)
Query: 119 MWSHVYIATLPTGEKVSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSW 178
+ + ++ LL+ + + + P++ L+GF
Sbjct: 371 LRLRPRVFQEAVVDERQYIWPWLISLLNSFHPHEE----DLSSISATPLPEEFELQGFLA 426
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase,
N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}
Length = 560
Score = 25.7 bits (55), Expect = 8.1
Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 2/130 (1%)
Query: 89 PSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKVSAFRKGKSFLLDFL 148
S D+ + L + G + Y+ G+ +SA + GK + +
Sbjct: 292 DSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKV 351
Query: 149 -LRYMNFTYIEEAPS-GDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKA 206
L + + P +W S TG++ + + + E
Sbjct: 352 DLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGK 411
Query: 207 AVILLDTQGT 216
+ T
Sbjct: 412 DFVTRKAFNT 421
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 24.1 bits (52), Expect = 9.1
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 237 SSIQIYNLSQNIQEDDLQHLQLFTEYGRL 265
+++ + NL + I +D L +F +YG +
Sbjct: 7 TNLYVTNLPRTITDDQLD--TIFGKYGSI 33
>d1x7fa1 b.62.1.2 (A:245-361) Outer surface protein, C-terminal
domain {Bacillus cereus [TaxId: 1396]}
Length = 117
Score = 24.3 bits (53), Expect = 9.1
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 45 ILLQDHVKDKHVVVVSVAGAFRKGKSFLLDFLLRYMNFTYIE 86
I+L++ D+ +V G + + FLLD++ + FT +E
Sbjct: 79 IILKEMPIDERKNIV---GTIAEEELFLLDYVGAWTQFTCVE 117
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.415
Gapped
Lambda K H
0.267 0.0422 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,087,502
Number of extensions: 52571
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 17
Length of query: 281
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,254,276
Effective search space: 247092372
Effective search space used: 247092372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)