BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5032
(193 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VC57|ATLAS_DROME Atlastin OS=Drosophila melanogaster GN=atl PE=1 SV=1
Length = 541
Score = 244 bits (624), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 117/160 (73%), Positives = 132/160 (82%), Gaps = 1/160 (0%)
Query: 20 SEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILM 79
S AFRKGKSFLLDF LRYM Y+ + DW+G + PLEGFSWRGGSERDTTGILM
Sbjct: 42 SVAGAFRKGKSFLLDFFLRYMYSKYVHHDAT-DWLGGESDPLEGFSWRGGSERDTTGILM 100
Query: 80 WSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQED 139
WS +++ P G+K A+ILLDTQG FDS+STVRDCATVFALSTMLSS+QIYNLSQNIQED
Sbjct: 101 WSDIFLHDYPNGDKIAIILLDTQGAFDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQED 160
Query: 140 DLQHLQLFTEYGRLALADTGTKPFQRLQFLAVNNNNPFRS 179
DLQHLQLFTEYGRLALADTG KPFQRLQFL + + P+ +
Sbjct: 161 DLQHLQLFTEYGRLALADTGKKPFQRLQFLVRDWSFPYEA 200
>sp|Q58D72|ATLA1_BOVIN Atlastin-1 OS=Bos taurus GN=ATL1 PE=2 SV=2
Length = 558
Score = 213 bits (541), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 103/154 (66%), Positives = 126/154 (81%), Gaps = 5/154 (3%)
Query: 24 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 83
AFRKGKSFL+DF+LRYM Y +E S DW+G + PL GFSWRGGSER+TTGI +WS +
Sbjct: 75 AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDHNEPLTGFSWRGGSERETTGIQIWSEI 129
Query: 84 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 143
++ P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct: 130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189
Query: 144 LQLFTEYGRLALADTGTKPFQRLQFLAVNNNNPF 177
LQLFTEYGRLA+ +T KPFQ L FL + + P+
Sbjct: 190 LQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPY 223
>sp|Q60HD2|ATLA1_MACFA Atlastin-1 OS=Macaca fascicularis GN=ATL1 PE=2 SV=1
Length = 558
Score = 212 bits (539), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 104/154 (67%), Positives = 126/154 (81%), Gaps = 5/154 (3%)
Query: 24 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 83
AFRKGKSFL+DF+LRYM Y +E S DW+G + PL GFSWRGGSER+TTGI +WS V
Sbjct: 75 AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEV 129
Query: 84 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 143
++ P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct: 130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189
Query: 144 LQLFTEYGRLALADTGTKPFQRLQFLAVNNNNPF 177
LQLFTEYGRLA+ +T KPFQ L FL + + P+
Sbjct: 190 LQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPY 223
>sp|Q5R4P1|ATLA1_PONAB Atlastin-1 OS=Pongo abelii GN=ATL1 PE=2 SV=2
Length = 558
Score = 211 bits (538), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/154 (66%), Positives = 126/154 (81%), Gaps = 5/154 (3%)
Query: 24 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 83
AFRKGKSFL+DF+LRYM Y +E S DW+G + PL GFSWRGGSER+TTGI +WS +
Sbjct: 75 AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 129
Query: 84 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 143
++ P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct: 130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189
Query: 144 LQLFTEYGRLALADTGTKPFQRLQFLAVNNNNPF 177
LQLFTEYGRLA+ +T KPFQ L FL + + P+
Sbjct: 190 LQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPY 223
>sp|Q8WXF7|ATLA1_HUMAN Atlastin-1 OS=Homo sapiens GN=ATL1 PE=1 SV=1
Length = 558
Score = 211 bits (538), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/154 (66%), Positives = 126/154 (81%), Gaps = 5/154 (3%)
Query: 24 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 83
AFRKGKSFL+DF+LRYM Y +E S DW+G + PL GFSWRGGSER+TTGI +WS +
Sbjct: 75 AFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 129
Query: 84 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 143
++ P G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QEDDLQH
Sbjct: 130 FLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQH 189
Query: 144 LQLFTEYGRLALADTGTKPFQRLQFLAVNNNNPF 177
LQLFTEYGRLA+ +T KPFQ L FL + + P+
Sbjct: 190 LQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPY 223
>sp|Q8BH66|ATLA1_MOUSE Atlastin-1 OS=Mus musculus GN=Atl1 PE=1 SV=1
Length = 558
Score = 207 bits (528), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/158 (65%), Positives = 126/158 (79%), Gaps = 5/158 (3%)
Query: 20 SEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILM 79
S AFRKGKSFL+DF+LRYM Y +E S DW+G + PL GFSWRGGSER+TTGI +
Sbjct: 71 SVAGAFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQI 125
Query: 80 WSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQED 139
WS V++ G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QED
Sbjct: 126 WSEVFLINKLDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQED 185
Query: 140 DLQHLQLFTEYGRLALADTGTKPFQRLQFLAVNNNNPF 177
DLQHLQLFTEYGRLA+ +T KPFQ L FL + + P+
Sbjct: 186 DLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPY 223
>sp|Q6GN29|ATLA2_XENLA Atlastin-2 OS=Xenopus laevis GN=atl2 PE=2 SV=1
Length = 569
Score = 207 bits (528), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 98/154 (63%), Positives = 119/154 (77%), Gaps = 6/154 (3%)
Query: 24 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 83
AFRKGKSFLLDF+LR+M + S W+G + PL GF+WRGG ER+TTGI +WS V
Sbjct: 91 AFRKGKSFLLDFMLRFMY------SQSSSWIGGNYEPLTGFTWRGGCERETTGIQIWSEV 144
Query: 84 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 143
++ P G K AVIL+DTQG FDS+ST++DCATVFALSTM SS+Q+YNLSQNIQEDDLQH
Sbjct: 145 FVVEKPDGSKVAVILMDTQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQH 204
Query: 144 LQLFTEYGRLALADTGTKPFQRLQFLAVNNNNPF 177
LQLFTEYGRLA+ + KPFQ L FL + + P+
Sbjct: 205 LQLFTEYGRLAMEEIYKKPFQTLMFLIRDWSYPY 238
>sp|Q6PST4|ATLA1_RAT Atlastin-1 OS=Rattus norvegicus GN=Atl1 PE=1 SV=1
Length = 558
Score = 207 bits (528), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/158 (65%), Positives = 126/158 (79%), Gaps = 5/158 (3%)
Query: 20 SEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILM 79
S AFRKGKSFL+DF+LRYM Y +E S DW+G + PL GFSWRGGSER+TTGI +
Sbjct: 71 SVAGAFRKGKSFLMDFMLRYM---YNQE--SVDWVGDYNEPLTGFSWRGGSERETTGIQI 125
Query: 80 WSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQED 139
WS V++ G+K AV+L+DTQGTFDS+ST+RD ATVFALSTM+SSIQ+YNLSQN+QED
Sbjct: 126 WSEVFLINKLDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQED 185
Query: 140 DLQHLQLFTEYGRLALADTGTKPFQRLQFLAVNNNNPF 177
DLQHLQLFTEYGRLA+ +T KPFQ L FL + + P+
Sbjct: 186 DLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPY 223
>sp|Q6PA06|ATLA2_MOUSE Atlastin-2 OS=Mus musculus GN=Atl2 PE=1 SV=1
Length = 583
Score = 207 bits (526), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 98/154 (63%), Positives = 123/154 (79%), Gaps = 5/154 (3%)
Query: 24 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 83
AFRKGKSFLLDF+LRYM Y +++ S W+G ++ PL GF+WRGG ER+TTGI +W+ V
Sbjct: 102 AFRKGKSFLLDFMLRYM---YNKDSQS--WIGGNNEPLTGFTWRGGCERETTGIQVWNEV 156
Query: 84 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 143
++ P G K AV+L+DTQG FDS+ST++DCATVFALSTM SS+Q+YNLSQNIQEDDLQH
Sbjct: 157 FVIDRPNGTKVAVLLMDTQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQH 216
Query: 144 LQLFTEYGRLALADTGTKPFQRLQFLAVNNNNPF 177
LQLFTEYGRLA+ + KPFQ L FL + + P+
Sbjct: 217 LQLFTEYGRLAMEEIYQKPFQTLMFLIRDWSYPY 250
>sp|Q95LN3|ATLA2_MACFA Atlastin-2 OS=Macaca fascicularis GN=ATL2 PE=2 SV=1
Length = 565
Score = 207 bits (526), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 98/154 (63%), Positives = 123/154 (79%), Gaps = 5/154 (3%)
Query: 24 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 83
AFRKGKSFLLDF+LRYM Y +++ S W+G ++ PL GF+WRGG ER+TTGI +W+ V
Sbjct: 84 AFRKGKSFLLDFMLRYM---YNKDSQS--WIGGNNEPLTGFTWRGGCERETTGIQVWNEV 138
Query: 84 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 143
++ P G K AV+L+DTQG FDS+ST++DCATVFALSTM SS+Q+YNLSQNIQEDDLQH
Sbjct: 139 FVIDRPNGTKVAVLLMDTQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQH 198
Query: 144 LQLFTEYGRLALADTGTKPFQRLQFLAVNNNNPF 177
LQLFTEYGRLA+ + KPFQ L FL + + P+
Sbjct: 199 LQLFTEYGRLAMEEIYQKPFQTLMFLIRDWSYPY 232
>sp|Q8NHH9|ATLA2_HUMAN Atlastin-2 OS=Homo sapiens GN=ATL2 PE=1 SV=2
Length = 583
Score = 207 bits (526), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 98/154 (63%), Positives = 123/154 (79%), Gaps = 5/154 (3%)
Query: 24 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 83
AFRKGKSFLLDF+LRYM Y +++ S W+G ++ PL GF+WRGG ER+TTGI +W+ V
Sbjct: 102 AFRKGKSFLLDFMLRYM---YNKDSQS--WIGGNNEPLTGFTWRGGCERETTGIQVWNEV 156
Query: 84 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 143
++ P G K AV+L+DTQG FDS+ST++DCATVFALSTM SS+Q+YNLSQNIQEDDLQH
Sbjct: 157 FVIDRPNGTKVAVLLMDTQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQH 216
Query: 144 LQLFTEYGRLALADTGTKPFQRLQFLAVNNNNPF 177
LQLFTEYGRLA+ + KPFQ L FL + + P+
Sbjct: 217 LQLFTEYGRLAMEEIYQKPFQTLMFLIRDWSYPY 250
>sp|Q91YH5|ATLA3_MOUSE Atlastin-3 OS=Mus musculus GN=Atl3 PE=2 SV=1
Length = 541
Score = 203 bits (517), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 98/159 (61%), Positives = 120/159 (75%), Gaps = 2/159 (1%)
Query: 20 SEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILM 79
S AFRKGKSF+LDF+LRY+ +E DW+G + PL GFSWRGGS+ +TTGI +
Sbjct: 64 SVAGAFRKGKSFILDFMLRYLYSQ--KEGGHSDWLGDPEEPLTGFSWRGGSDPETTGIQI 121
Query: 80 WSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQED 139
WS V+ P G+K AV+L+DTQG FDS+STV+DCAT+FALSTM SS+QIYNLSQNIQED
Sbjct: 122 WSEVFTVKKPCGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQED 181
Query: 140 DLQHLQLFTEYGRLALADTGTKPFQRLQFLAVNNNNPFR 178
DLQ LQLFTEYGRLA+ + KPFQ L FL + + P+
Sbjct: 182 DLQQLQLFTEYGRLAMDEIFQKPFQTLMFLIRDWSFPYE 220
>sp|Q6DD88|ATLA3_HUMAN Atlastin-3 OS=Homo sapiens GN=ATL3 PE=1 SV=1
Length = 541
Score = 202 bits (513), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/159 (61%), Positives = 121/159 (76%), Gaps = 2/159 (1%)
Query: 20 SEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILM 79
S AFRKGKSF+LDF+LRY+ +E+ +W+G + PL GFSWRGGS+ +TTGI +
Sbjct: 64 SVAGAFRKGKSFILDFMLRYLYSQ--KESGHSNWLGDPEEPLTGFSWRGGSDPETTGIQI 121
Query: 80 WSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQED 139
WS V+ P G+K AV+L+DTQG FDS+STV+DCAT+FALSTM SS+QIYNLSQNIQED
Sbjct: 122 WSEVFTVEKPGGKKVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQED 181
Query: 140 DLQHLQLFTEYGRLALADTGTKPFQRLQFLAVNNNNPFR 178
DLQ LQLFTEYGRLA+ + KPFQ L FL + + P+
Sbjct: 182 DLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYE 220
>sp|Q0ZHH6|ATLA3_RAT Atlastin-3 OS=Rattus norvegicus GN=Atl3 PE=2 SV=2
Length = 541
Score = 200 bits (509), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 96/155 (61%), Positives = 121/155 (78%), Gaps = 2/155 (1%)
Query: 24 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 83
AFRKGKSF+LDF+LRY+ ++ E S +W+G + PL GFSWRGGS+ +TTGI +WS V
Sbjct: 68 AFRKGKSFILDFMLRYL-YSQKEHGHS-NWLGDPEEPLTGFSWRGGSDPETTGIQIWSEV 125
Query: 84 YIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 143
+ P G++ AV+L+DTQG FDS+STV+DCAT+FALSTM SS+QIYNLSQNIQEDDLQ
Sbjct: 126 FTVKKPCGKEVAVVLMDTQGAFDSQSTVKDCATIFALSTMTSSVQIYNLSQNIQEDDLQQ 185
Query: 144 LQLFTEYGRLALADTGTKPFQRLQFLAVNNNNPFR 178
LQLFTEYGRLA+ + KPFQ L FL + + P+
Sbjct: 186 LQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYE 220
>sp|O70418|RN112_RAT RING finger protein 112 OS=Rattus norvegicus GN=Rnf112 PE=2 SV=1
Length = 631
Score = 75.1 bits (183), Expect = 3e-13, Method: Composition-based stats.
Identities = 54/153 (35%), Positives = 76/153 (49%), Gaps = 9/153 (5%)
Query: 28 GKSFLLDFLLRYMNFTYIEEAPSGDWMGPD-DVPLEGFSWRGGSERDTTGILMWSHVYIA 86
GKSFLLD LLR + SGD P + L G W G+ T GI MWSH ++
Sbjct: 181 GKSFLLDHLLRGL-----PGLESGDSTRPRAEGSLPGIRW--GANGLTRGIWMWSHPFLL 233
Query: 87 TLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQL 146
G+K AV L+DT E + + AL+ MLSS QI N SQ +++ DL +L++
Sbjct: 234 G-KEGKKVAVFLVDTGDVMSPELSRETRVKLCALTMMLSSYQILNTSQELKDTDLGYLEM 292
Query: 147 FTEYGRLALADTGTKPFQRLQFLAVNNNNPFRS 179
F + G P Q L L ++++ +S
Sbjct: 293 FVHVAEVMGKHYGMVPIQHLDLLVRDSSHHNKS 325
>sp|Q96DY5|RN112_MOUSE RING finger protein 112 OS=Mus musculus GN=Rnf112 PE=2 SV=1
Length = 654
Score = 74.3 bits (181), Expect = 5e-13, Method: Composition-based stats.
Identities = 52/152 (34%), Positives = 74/152 (48%), Gaps = 7/152 (4%)
Query: 28 GKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIAT 87
GKSFLLD LL +E SG +P G W G+ T GI MWSH ++
Sbjct: 204 GKSFLLDHLLS--GLPSLESGDSGRPRAEGSLP--GIRW--GANGLTRGIWMWSHPFLLG 257
Query: 88 LPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLF 147
G+K AV L+DT E + + AL+ MLSS QI N SQ +++ DL +L++F
Sbjct: 258 -KEGKKVAVFLVDTGDVMSPELSKETRVKLCALTMMLSSYQILNTSQELKDTDLGYLEMF 316
Query: 148 TEYGRLALADTGTKPFQRLQFLAVNNNNPFRS 179
+ G P Q L L ++++ +S
Sbjct: 317 VHVAEVMGKHYGMVPIQHLDLLVRDSSHHNKS 348
>sp|Q08DF2|RN112_BOVIN RING finger protein 112 OS=Bos taurus GN=RNF112 PE=2 SV=1
Length = 628
Score = 71.2 bits (173), Expect = 4e-12, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 9/153 (5%)
Query: 28 GKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDV-PLEGFSWRGGSERDTTGILMWSHVYIA 86
GK+FLL+ LL+ + SG+ P +GF W G+ + GI MWSH ++
Sbjct: 182 GKTFLLNHLLQGL-----PGLASGEGSWPRSAGSGQGFRW--GANGLSRGIWMWSHPFLL 234
Query: 87 TLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQL 146
G K AV L+DT E + + AL++MLSS QI SQ +++ DL+HL+
Sbjct: 235 G-KEGRKVAVFLVDTGDVMSPELSRETRTRLCALTSMLSSYQILTASQELKDTDLEHLET 293
Query: 147 FTEYGRLALADTGTKPFQRLQFLAVNNNNPFRS 179
F + G P Q L L ++++P ++
Sbjct: 294 FVHVAEVMGRHYGMVPIQHLDLLVRDSSHPSKA 326
>sp|Q9ULX5|RN112_HUMAN RING finger protein 112 OS=Homo sapiens GN=RNF112 PE=2 SV=2
Length = 631
Score = 69.3 bits (168), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 6/152 (3%)
Query: 28 GKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIAT 87
GKSFLL+ LL+ + E+ G + L+G W G+ GI MWSH ++
Sbjct: 181 GKSFLLNHLLQGLPGL---ESGEGGRPRGGEASLQGCRW--GANGLARGIWMWSHPFLLG 235
Query: 88 LPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLF 147
G+K AV L+DT E + + AL+TMLSS QI + SQ +++ DL +L++F
Sbjct: 236 -KEGKKVAVFLVDTGDAMSPELSRETRIKLCALTTMLSSYQILSTSQELKDTDLDYLEMF 294
Query: 148 TEYGRLALADTGTKPFQRLQFLAVNNNNPFRS 179
+ G P Q L L ++++P ++
Sbjct: 295 VHVAEVMGKHYGMVPIQHLDLLVRDSSHPNKA 326
>sp|Q96PP9|GBP4_HUMAN Guanylate-binding protein 4 OS=Homo sapiens GN=GBP4 PE=1 SV=2
Length = 640
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 26/139 (18%)
Query: 25 FRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVY 84
+R GKS+L++ L N GF + +T GI MW +
Sbjct: 62 YRTGKSYLMNRLAGKRN---------------------GFPLGSTVQSETKGIWMWCVPH 100
Query: 85 IATLPTGEKAAVILLDTQGTFDSE-STVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQH 143
++ P ++LLDT+G D E S ++ + +FAL+ +LSS +YN I L+
Sbjct: 101 LSK-PNH---TLVLLDTEGLGDVEKSNPKNDSWIFALAVLLSSSFVYNSVSTINHQALEQ 156
Query: 144 LQLFTEYGRLALADTGTKP 162
L TE L A + +P
Sbjct: 157 LHYVTELAELIRAKSCPRP 175
>sp|Q61107|GBP4_MOUSE Guanylate-binding protein 4 OS=Mus musculus GN=Gbp4 PE=1 SV=1
Length = 620
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 63 GFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSES-TVRDCATVFALS 121
GFS + +T GI MW + PT ++LLDT+G D E ++ + +FAL+
Sbjct: 58 GFSLGSTVQSETKGIWMWCVPH----PTKPTHTLVLLDTEGLGDVEKGDPKNDSWIFALA 113
Query: 122 TMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTK 161
+LSS +YN I + L+ L TE +L A + +
Sbjct: 114 VLLSSTFVYNSMSTINQQALEQLHFVTELTQLIRAKSSPR 153
>sp|Q5R9T9|GBP6_PONAB Guanylate-binding protein 6 OS=Pongo abelii GN=GBP6 PE=2 SV=1
Length = 633
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 63 GFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSES-TVRDCATVFALS 121
GF + +T GI MW + P+ ++LLDT+G D E ++ + +FAL+
Sbjct: 64 GFPLGSTVQSETKGIWMWCVPH----PSKPNHTLVLLDTEGLGDVEKGDPKNDSWIFALA 119
Query: 122 TMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKP 162
+L S IYN I L+ L TE L A + +P
Sbjct: 120 VLLCSTFIYNSMSTINHQALEQLHYVTELTELIKAKSSPRP 160
>sp|Q8N8V2|GBP7_HUMAN Guanylate-binding protein 7 OS=Homo sapiens GN=GBP7 PE=2 SV=2
Length = 638
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 62 EGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSE-STVRDCATVFAL 120
+GF + +T GI MW + P+ +ILLDT+G D E S + + +FAL
Sbjct: 63 KGFPLGCTVKSETKGIWMWCVPH----PSKPNHTLILLDTEGLGDMEKSDPKSDSWIFAL 118
Query: 121 STMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKP 162
+ +LSS +YN I L+ L TE L A + +P
Sbjct: 119 AVLLSSSFVYNSMGTINHQALEQLHYVTELTELIRAKSCPRP 160
>sp|Q6ZN66|GBP6_HUMAN Guanylate-binding protein 6 OS=Homo sapiens GN=GBP6 PE=2 SV=1
Length = 633
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 63 GFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSES-TVRDCATVFALS 121
GF + +T GI MW + P+ ++LLDT+G D E ++ + +FAL+
Sbjct: 64 GFPLGSTVQSETKGIWMWCVPH----PSKPNHTLVLLDTEGLGDVEKGDPKNDSWIFALA 119
Query: 122 TMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKP 162
+L S +YN I L+ L TE L A + +P
Sbjct: 120 VLLCSTFVYNSMSTINHQALEQLHYVTELTELIKAKSSPRP 160
>sp|Q9Z0E6|GBP2_MOUSE Interferon-induced guanylate-binding protein 2 OS=Mus musculus
GN=Gbp2 PE=1 SV=1
Length = 589
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 63 GFSWRGGSERDTTGILMWSHVYIATLPTGEKAA--VILLDTQGTFDSES--TVRDCATVF 118
GFS + T GI MW +P +KA ++LLDT+G D E DC +F
Sbjct: 64 GFSLGSTVQSHTKGIWMW------CVPHPKKAGQTLVLLDTEGLEDVEKGDNQNDCW-IF 116
Query: 119 ALSTMLSSIQIYNLSQNIQEDDLQHLQLFTE 149
AL+ +LSS IYN I + + L TE
Sbjct: 117 ALAVLLSSTFIYNSIGTINQQAMDQLHYVTE 147
>sp|Q01514|GBP1_MOUSE Interferon-induced guanylate-binding protein 1 OS=Mus musculus
GN=Gbp1 PE=1 SV=1
Length = 589
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 63 GFSWRGGSERDTTGILMWSHVYIATLPTGEKAA--VILLDTQGTFDSES--TVRDCATVF 118
GFS + T GI MW +P +KA ++LLDT+G D E DC +F
Sbjct: 64 GFSLGSTVQSHTKGIWMWC------VPHPKKAGQTLVLLDTEGLEDVEKGDNQNDCW-IF 116
Query: 119 ALSTMLSSIQIYNLSQNIQEDDLQHLQLFTE 149
AL+ +LSS IYN I + + L TE
Sbjct: 117 ALAVLLSSTFIYNSIGTINQQAMDQLHYVTE 147
>sp|Q63663|GBP2_RAT Interferon-induced guanylate-binding protein 2 OS=Rattus norvegicus
GN=Gbp2 PE=1 SV=2
Length = 589
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 63 GFSWRGGSERDTTGILMWSHVYIATLPTGEKAA--VILLDTQGTFDSES--TVRDCATVF 118
GFS + T GI MW +P +KA ++LLDT+G D E DC +F
Sbjct: 64 GFSLGSTVQSHTKGIWMW------CVPHPKKAGQTLVLLDTEGLEDVEKGDNQNDC-WIF 116
Query: 119 ALSTMLSSIQIYNLSQNIQEDDLQHLQLFTE 149
AL+ +LSS +YN I + + L TE
Sbjct: 117 ALAVLLSSTFVYNSMGTINQQAMDQLHYVTE 147
>sp|P32456|GBP2_HUMAN Interferon-induced guanylate-binding protein 2 OS=Homo sapiens
GN=GBP2 PE=1 SV=3
Length = 591
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 26/126 (20%)
Query: 25 FRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVY 84
+R GKS+L++ L N GFS + T GI MW +
Sbjct: 47 YRTGKSYLMNKLAGKKN---------------------GFSLGSTVKSHTKGIWMWCVPH 85
Query: 85 IATLPTGEKAAVILLDTQGTFDSESTVRDCAT-VFALSTMLSSIQIYNLSQNIQEDDLQH 143
P + ++LLDT+G D E + + +FAL+ +LSS +YN I + +
Sbjct: 86 ----PKKPEHTLVLLDTEGLGDIEKGDNENDSWIFALAILLSSTFVYNSMGTINQQAMDQ 141
Query: 144 LQLFTE 149
L TE
Sbjct: 142 LHYVTE 147
>sp|Q5D1D6|GBP1_CHLAE Interferon-induced guanylate-binding protein 1 OS=Chlorocebus
aethiops GN=GBP1 PE=2 SV=1
Length = 590
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 62 EGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSES-TVRDCATVFAL 120
+GFS + T GI MW + P ++LLDT+G D E ++ + +FAL
Sbjct: 63 KGFSLGSTVQSHTKGIWMWCVPH----PKKPGHVLVLLDTEGLGDVEKGDNQNDSWIFAL 118
Query: 121 STMLSSIQIYNLSQNIQEDDLQHLQLFTE 149
+ +LSS +YN I + + L TE
Sbjct: 119 AILLSSTFVYNSMGTINQQAMDQLHYVTE 147
>sp|Q8CFB4|GBP5_MOUSE Guanylate-binding protein 5 OS=Mus musculus GN=Gbp5 PE=1 SV=2
Length = 590
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 62 EGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCAT-VFAL 120
+GFS + T GI MW + P ++LLDT+G D E + T +FAL
Sbjct: 63 KGFSVGSTVQSHTKGIWMWCVPH----PQKPDHTLVLLDTEGLGDVEKDDKKNDTQIFAL 118
Query: 121 STMLSSIQIYNLSQNIQEDDLQHLQLFTE 149
+ +LSS +YN I + + L TE
Sbjct: 119 AILLSSTFVYNTMNKIDQGAIDLLHNVTE 147
>sp|Q96PP8|GBP5_HUMAN Guanylate-binding protein 5 OS=Homo sapiens GN=GBP5 PE=1 SV=1
Length = 586
Score = 37.4 bits (85), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 62 EGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSEST-VRDCATVFAL 120
+GFS + T GI +W + P ++LLDT+G D E ++ +FAL
Sbjct: 63 KGFSVASTVQSHTKGIWIWCVPH----PNWPNHTLVLLDTEGLGDVEKADNKNDIQIFAL 118
Query: 121 STMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALA 156
+ +LSS +YN I + + L TE L A
Sbjct: 119 ALLLSSTFVYNTVNKIDQGAIDLLHNVTELTDLLKA 154
>sp|Q5RBE1|GBP1_PONAB Interferon-induced guanylate-binding protein 1 OS=Pongo abelii
GN=GBP1 PE=2 SV=1
Length = 592
Score = 37.0 bits (84), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 62 EGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSES-TVRDCATVFAL 120
+GFS + T GI MW + P ++LLDT+G D E ++ + +FAL
Sbjct: 63 KGFSLGSTVQSHTKGIWMWCVPH----PKKPGHILVLLDTEGLGDVEKGDNQNDSWIFAL 118
Query: 121 STMLSSIQIYNLSQNIQEDDLQHLQLFTE 149
+ +LSS +YN I + + L TE
Sbjct: 119 AVLLSSTFVYNSIGTINQQAMDQLYYVTE 147
>sp|P32455|GBP1_HUMAN Interferon-induced guanylate-binding protein 1 OS=Homo sapiens
GN=GBP1 PE=1 SV=2
Length = 592
Score = 37.0 bits (84), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 62 EGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSES-TVRDCATVFAL 120
+GFS + T GI MW + P ++LLDT+G D E ++ + +FAL
Sbjct: 63 KGFSLGSTVQSHTKGIWMWCVPH----PKKPGHILVLLDTEGLGDVEKGDNQNDSWIFAL 118
Query: 121 STMLSSIQIYNLSQNIQEDDLQHLQLFTE 149
+ +LSS +YN I + + L TE
Sbjct: 119 AVLLSSTFVYNSIGTINQQAMDQLYYVTE 147
>sp|Q9H0R5|GBP3_HUMAN Guanylate-binding protein 3 OS=Homo sapiens GN=GBP3 PE=2 SV=3
Length = 595
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 62 EGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFD-SESTVRDCATVFAL 120
+GFS + T GI MW + P + ++LLDT+G D + ++ + +F L
Sbjct: 63 KGFSLGSTVKSHTKGIWMWCVPH----PKKPEHTLVLLDTEGLGDVKKGDNQNDSWIFTL 118
Query: 121 STMLSSIQIYNLSQNIQEDDLQHLQLFTE 149
+ +LSS +YN I + + L TE
Sbjct: 119 AVLLSSTLVYNSMGTINQQAMDQLYYVTE 147
>sp|Q689D1|TLR2_CANFA Toll-like receptor 2 OS=Canis familiaris GN=TLR2 PE=2 SV=1
Length = 785
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 73 DTTGILMWSHVYIATLPTGEKAAVILLD---TQGTFDSESTVRDCATVFALSTMLSSIQI 129
D TG+ + ++P+G AAV LD + T+ S +RDC + AL + I
Sbjct: 32 DPTGVCDGRSRSLNSMPSGLTAAVRSLDLSNNEITYIGNSDLRDCVNLKALRLESNGINT 91
Query: 130 YNLSQNIQEDDLQHLQLFTEYGRLA-LADTGTKPFQRLQFLAVNNNNPFRS----PVQVQ 184
+ L+HL L Y L+ L+ + +P L+FL + NP++S P+ Q
Sbjct: 92 IEEESFLSLWSLEHLDL--SYNLLSNLSSSWFRPLSSLKFLNL-LGNPYKSLGETPLFSQ 148
Query: 185 LTGV 188
LT +
Sbjct: 149 LTNL 152
>sp|D7CFN7|AGAL_STRBB Probable retaining alpha-galactosidase OS=Streptomyces
bingchenggensis (strain BCW-1) GN=SBI_01652 PE=3 SV=1
Length = 635
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 1 MAEYVKVTHRRPSDNDSKNSE-KSAFRKGKSFLLDFLLRY----MNFTYIEEAPSGDWMG 55
+AE + + D + +E + FR D ++R + + Y+ SGD +G
Sbjct: 99 VAERYRTAVGKQRSRDVRMTETRFRFRGDGGARFDLVVRVSDDGVAYRYVLPKGSGDVLG 158
Query: 56 PDD---VPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTF 105
+P + +W G RD + + AT PTGE A L +T+GT+
Sbjct: 159 ETSAFTLPTDATAWLGAYRRDNENLF--NQYPAATAPTGEYMAQALFETRGTY 209
>sp|Q58404|Y998_METJA Uncharacterized protein MJ0998 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0998 PE=4 SV=1
Length = 241
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 119 ALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQR 165
S +L+S+ + ++ DD+Q L+T +G LAL G K Q
Sbjct: 114 VFSILLTSVYVLGYVAFLKPDDIQFGTLYTAFGGLALLGAGIKIIQH 160
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,242,208
Number of Sequences: 539616
Number of extensions: 2965407
Number of successful extensions: 5967
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5925
Number of HSP's gapped (non-prelim): 38
length of query: 193
length of database: 191,569,459
effective HSP length: 111
effective length of query: 82
effective length of database: 131,672,083
effective search space: 10797110806
effective search space used: 10797110806
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)