Query psy5032
Match_columns 193
No_of_seqs 115 out of 524
Neff 6.2
Searched_HMMs 46136
Date Sat Aug 17 00:02:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5032.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5032hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02263 GBP: Guanylate-bindin 100.0 1.1E-50 2.3E-55 347.9 13.4 160 2-187 7-175 (260)
2 cd01851 GBP Guanylate-binding 100.0 9.4E-39 2E-43 268.6 16.2 147 11-182 2-153 (224)
3 KOG2037|consensus 99.9 2.2E-28 4.7E-33 227.7 0.8 178 5-183 21-233 (552)
4 PF05879 RHD3: Root hair defec 99.7 1.1E-16 2.3E-21 155.1 8.1 125 22-175 1-136 (742)
5 KOG2203|consensus 99.6 1.6E-15 3.6E-20 140.8 6.4 129 15-175 36-173 (772)
6 KOG2037|consensus 99.3 6.6E-13 1.4E-17 124.5 0.5 120 61-188 56-189 (552)
7 PF04548 AIG1: AIG1 family; I 98.6 3.9E-07 8.4E-12 75.8 9.9 102 19-150 3-110 (212)
8 cd01852 AIG1 AIG1 (avrRpt2-ind 98.6 6E-07 1.3E-11 73.1 10.6 102 19-150 3-110 (196)
9 cd01853 Toc34_like Toc34-like 98.5 2.3E-06 5.1E-11 73.4 11.5 117 3-149 18-142 (249)
10 PF01926 MMR_HSR1: 50S ribosom 98.4 2.7E-06 5.8E-11 63.3 9.9 61 19-109 2-62 (116)
11 TIGR00993 3a0901s04IAP86 chlor 98.2 3E-05 6.4E-10 75.0 14.7 139 11-186 110-260 (763)
12 KOG4181|consensus 98.1 1.2E-05 2.7E-10 72.5 8.8 35 4-39 177-211 (491)
13 TIGR03598 GTPase_YsxC ribosome 98.0 9E-05 2E-09 59.2 11.3 111 5-147 7-125 (179)
14 PRK00089 era GTPase Era; Revie 98.0 5E-05 1.1E-09 65.4 10.3 26 14-39 3-28 (292)
15 COG1159 Era GTPase [General fu 98.0 1.2E-05 2.5E-10 70.8 6.2 26 14-39 4-29 (298)
16 cd04163 Era Era subfamily. Er 97.8 0.00023 5.1E-09 53.8 10.3 22 17-38 4-25 (168)
17 cd01858 NGP_1 NGP-1. Autoanti 97.8 4.4E-05 9.4E-10 60.0 6.1 22 17-38 103-124 (157)
18 PF03193 DUF258: Protein of un 97.7 3.7E-05 8.1E-10 62.2 4.0 23 17-39 36-58 (161)
19 TIGR00991 3a0901s02IAP34 GTP-b 97.7 0.00065 1.4E-08 60.4 12.1 29 10-38 32-60 (313)
20 TIGR00436 era GTP-binding prot 97.7 0.00016 3.5E-09 62.0 7.9 21 18-38 2-22 (270)
21 cd01849 YlqF_related_GTPase Yl 97.6 0.00016 3.6E-09 56.7 6.3 24 15-38 99-122 (155)
22 PRK12289 GTPase RsgA; Reviewed 97.6 0.00013 2.8E-09 65.8 6.3 30 8-39 166-195 (352)
23 cd04104 p47_IIGP_like p47 (47- 97.6 0.00034 7.3E-09 57.2 7.9 20 19-38 4-23 (197)
24 PF02421 FeoB_N: Ferrous iron 97.5 0.00047 1E-08 55.5 7.8 83 19-134 3-87 (156)
25 cd01878 HflX HflX subfamily. 97.5 0.0013 2.8E-08 53.3 10.0 26 13-38 38-63 (204)
26 cd04101 RabL4 RabL4 (Rab-like4 97.4 0.00047 1E-08 53.3 6.8 60 19-104 3-62 (164)
27 PF00350 Dynamin_N: Dynamin fa 97.4 0.00014 3E-09 56.9 3.5 21 19-39 1-21 (168)
28 cd00880 Era_like Era (E. coli 97.4 0.00079 1.7E-08 49.9 7.5 19 21-39 1-19 (163)
29 cd01894 EngA1 EngA1 subfamily. 97.4 0.0012 2.6E-08 50.0 8.5 19 20-38 1-19 (157)
30 cd01876 YihA_EngB The YihA (En 97.4 0.003 6.5E-08 47.9 10.7 20 19-38 2-21 (170)
31 cd01850 CDC_Septin CDC/Septin. 97.4 0.00047 1E-08 59.9 6.9 72 18-108 6-77 (276)
32 cd04178 Nucleostemin_like Nucl 97.4 0.00055 1.2E-08 55.5 6.9 23 16-38 117-139 (172)
33 PRK09563 rbgA GTPase YlqF; Rev 97.4 0.00088 1.9E-08 58.3 8.5 63 14-109 119-181 (287)
34 cd01890 LepA LepA subfamily. 97.3 0.002 4.3E-08 50.5 9.3 21 19-39 3-23 (179)
35 TIGR00231 small_GTP small GTP- 97.3 0.00071 1.5E-08 50.2 6.2 20 19-38 4-23 (161)
36 PRK12288 GTPase RsgA; Reviewed 97.3 0.00032 7E-09 63.0 5.0 21 19-39 208-228 (347)
37 cd01897 NOG NOG1 is a nucleola 97.3 0.002 4.3E-08 49.9 8.8 21 18-38 2-22 (168)
38 cd01898 Obg Obg subfamily. Th 97.3 0.0022 4.7E-08 49.7 8.9 20 19-38 3-22 (170)
39 PRK00454 engB GTP-binding prot 97.3 0.0065 1.4E-07 48.4 11.6 27 12-38 20-46 (196)
40 cd01857 HSR1_MMR1 HSR1/MMR1. 97.2 0.0011 2.3E-08 51.3 6.5 21 18-38 85-105 (141)
41 cd04142 RRP22 RRP22 subfamily. 97.2 0.0031 6.8E-08 51.7 9.7 20 19-38 3-22 (198)
42 PF00009 GTP_EFTU: Elongation 97.2 0.00061 1.3E-08 55.0 5.2 27 14-40 1-27 (188)
43 KOG1423|consensus 97.2 0.00061 1.3E-08 60.8 5.5 68 13-110 69-136 (379)
44 TIGR00157 ribosome small subun 97.2 0.00074 1.6E-08 57.6 5.9 22 18-39 122-143 (245)
45 cd01861 Rab6 Rab6 subfamily. 97.2 0.0053 1.1E-07 47.0 10.0 20 19-38 3-22 (161)
46 TIGR02836 spore_IV_A stage IV 97.2 0.00083 1.8E-08 62.3 6.1 31 9-40 11-41 (492)
47 cd04164 trmE TrmE (MnmE, ThdF, 97.1 0.0062 1.4E-07 45.9 9.9 21 18-38 3-23 (157)
48 PRK15494 era GTPase Era; Provi 97.1 0.0052 1.1E-07 54.8 10.6 25 14-38 50-74 (339)
49 COG3596 Predicted GTPase [Gene 97.1 0.00082 1.8E-08 59.0 5.1 24 14-38 38-61 (296)
50 cd04106 Rab23_lke Rab23-like s 97.1 0.002 4.3E-08 49.5 6.8 60 19-105 3-62 (162)
51 PRK00098 GTPase RsgA; Reviewed 97.0 0.0014 2.9E-08 57.5 6.1 22 18-39 166-187 (298)
52 COG3840 ThiQ ABC-type thiamine 97.0 0.00082 1.8E-08 56.3 4.3 22 18-39 27-48 (231)
53 cd04113 Rab4 Rab4 subfamily. 97.0 0.002 4.4E-08 49.6 6.3 20 19-38 3-22 (161)
54 cd01895 EngA2 EngA2 subfamily. 97.0 0.012 2.6E-07 44.9 10.6 21 18-38 4-24 (174)
55 cd01854 YjeQ_engC YjeQ/EngC. 97.0 0.003 6.5E-08 55.0 7.8 23 17-39 162-184 (287)
56 cd01864 Rab19 Rab19 subfamily. 97.0 0.0025 5.4E-08 49.5 6.4 22 17-38 4-25 (165)
57 cd04171 SelB SelB subfamily. 97.0 0.0019 4.1E-08 49.4 5.6 21 18-38 2-22 (164)
58 cd04119 RJL RJL (RabJ-Like) su 96.9 0.003 6.4E-08 48.4 6.6 58 19-105 3-60 (168)
59 cd01887 IF2_eIF5B IF2/eIF5B (i 96.9 0.002 4.4E-08 49.6 5.7 21 18-38 2-22 (168)
60 cd01868 Rab11_like Rab11-like. 96.9 0.0028 6.1E-08 49.0 6.4 21 18-38 5-25 (165)
61 cd00881 GTP_translation_factor 96.9 0.0068 1.5E-07 47.4 8.6 21 19-39 2-22 (189)
62 COG1116 TauB ABC-type nitrate/ 96.9 0.002 4.4E-08 55.6 5.9 22 18-39 31-52 (248)
63 cd00154 Rab Rab family. Rab G 96.9 0.0029 6.3E-08 47.4 6.2 20 19-38 3-22 (159)
64 COG1084 Predicted GTPase [Gene 96.9 0.0056 1.2E-07 54.9 8.7 110 12-153 164-278 (346)
65 PRK00093 GTP-binding protein D 96.9 0.014 3E-07 53.0 11.5 24 15-38 172-195 (435)
66 PF00735 Septin: Septin; Inte 96.9 0.0026 5.5E-08 55.6 6.2 72 19-109 7-78 (281)
67 cd00882 Ras_like_GTPase Ras-li 96.9 0.0013 2.7E-08 48.0 3.7 19 21-39 1-19 (157)
68 cd04145 M_R_Ras_like M-Ras/R-R 96.9 0.0046 9.9E-08 47.4 7.0 21 18-38 4-24 (164)
69 cd01881 Obg_like The Obg-like 96.9 0.0037 7.9E-08 48.4 6.5 18 21-38 1-18 (176)
70 cd01866 Rab2 Rab2 subfamily. 96.8 0.0035 7.6E-08 49.1 6.4 23 16-38 4-26 (168)
71 PRK12298 obgE GTPase CgtA; Rev 96.8 0.006 1.3E-07 55.7 8.7 24 16-39 159-182 (390)
72 TIGR03596 GTPase_YlqF ribosome 96.8 0.0068 1.5E-07 52.3 8.6 24 15-38 117-140 (276)
73 cd01865 Rab3 Rab3 subfamily. 96.8 0.0038 8.2E-08 48.6 6.4 58 19-105 4-61 (165)
74 cd04124 RabL2 RabL2 subfamily. 96.8 0.0033 7.2E-08 48.9 6.0 20 19-38 3-22 (161)
75 cd01860 Rab5_related Rab5-rela 96.8 0.0036 7.9E-08 48.0 6.2 20 19-38 4-23 (163)
76 cd04139 RalA_RalB RalA/RalB su 96.8 0.0034 7.4E-08 48.0 5.8 20 19-38 3-22 (164)
77 cd04122 Rab14 Rab14 subfamily. 96.8 0.004 8.7E-08 48.5 6.3 20 19-38 5-24 (166)
78 cd04160 Arfrp1 Arfrp1 subfamil 96.8 0.014 3E-07 45.1 9.2 20 19-38 2-21 (167)
79 cd04115 Rab33B_Rab33A Rab33B/R 96.8 0.0062 1.3E-07 47.8 7.2 23 16-38 2-24 (170)
80 cd04159 Arl10_like Arl10-like 96.8 0.0033 7.2E-08 47.2 5.4 20 19-38 2-21 (159)
81 cd01855 YqeH YqeH. YqeH is an 96.7 0.0028 6.2E-08 51.1 5.3 22 18-39 129-150 (190)
82 cd04136 Rap_like Rap-like subf 96.7 0.0038 8.2E-08 47.8 5.7 21 18-38 3-23 (163)
83 PF05049 IIGP: Interferon-indu 96.7 0.0085 1.8E-07 54.6 8.8 107 14-150 34-140 (376)
84 smart00173 RAS Ras subfamily o 96.7 0.0039 8.4E-08 48.1 5.8 20 19-38 3-22 (164)
85 cd04123 Rab21 Rab21 subfamily. 96.7 0.0052 1.1E-07 46.7 6.4 20 19-38 3-22 (162)
86 cd01862 Rab7 Rab7 subfamily. 96.7 0.0045 9.7E-08 47.9 6.0 21 19-39 3-23 (172)
87 smart00175 RAB Rab subfamily o 96.7 0.0057 1.2E-07 46.8 6.5 20 19-38 3-22 (164)
88 PRK00093 GTP-binding protein D 96.7 0.022 4.8E-07 51.7 11.3 21 18-38 3-23 (435)
89 TIGR03594 GTPase_EngA ribosome 96.7 0.025 5.3E-07 51.2 11.5 24 15-38 171-194 (429)
90 cd04109 Rab28 Rab28 subfamily. 96.7 0.0057 1.2E-07 50.3 6.6 58 19-104 3-60 (215)
91 cd04138 H_N_K_Ras_like H-Ras/N 96.6 0.0058 1.3E-07 46.5 6.1 20 19-38 4-23 (162)
92 cd01867 Rab8_Rab10_Rab13_like 96.6 0.0057 1.2E-07 47.7 6.1 22 17-38 4-25 (167)
93 PRK11058 GTPase HflX; Provisio 96.6 0.019 4.1E-07 53.0 10.4 23 16-38 197-219 (426)
94 cd00877 Ran Ran (Ras-related n 96.6 0.007 1.5E-07 47.6 6.6 59 19-106 3-61 (166)
95 TIGR03594 GTPase_EngA ribosome 96.6 0.022 4.8E-07 51.5 10.8 21 18-38 1-21 (429)
96 cd04127 Rab27A Rab27a subfamil 96.6 0.0096 2.1E-07 46.7 7.4 23 16-38 4-26 (180)
97 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.6 0.0062 1.3E-07 47.2 6.2 21 18-38 4-24 (166)
98 cd00157 Rho Rho (Ras homology) 96.6 0.0069 1.5E-07 46.7 6.4 20 19-38 3-22 (171)
99 cd04116 Rab9 Rab9 subfamily. 96.6 0.0071 1.5E-07 47.0 6.5 22 17-38 6-27 (170)
100 COG1136 SalX ABC-type antimicr 96.6 0.0016 3.5E-08 55.4 3.0 21 18-38 33-53 (226)
101 cd04112 Rab26 Rab26 subfamily. 96.6 0.0057 1.2E-07 49.2 6.0 20 19-38 3-22 (191)
102 PTZ00258 GTP-binding protein; 96.6 0.0059 1.3E-07 55.9 6.5 37 1-38 7-43 (390)
103 PF10220 DUF2146: Uncharacteri 96.6 0.054 1.2E-06 54.4 13.6 68 10-108 5-77 (895)
104 cd01896 DRG The developmentall 96.5 0.038 8.3E-07 46.6 11.0 21 18-38 2-22 (233)
105 cd00879 Sar1 Sar1 subfamily. 96.5 0.014 3.1E-07 46.3 8.0 34 4-38 8-41 (190)
106 cd01863 Rab18 Rab18 subfamily. 96.5 0.0073 1.6E-07 46.4 6.1 20 19-38 3-22 (161)
107 cd00876 Ras Ras family. The R 96.5 0.0072 1.6E-07 45.8 6.0 20 19-38 2-21 (160)
108 cd01856 YlqF YlqF. Proteins o 96.5 0.007 1.5E-07 48.2 6.0 22 17-38 116-137 (171)
109 cd04118 Rab24 Rab24 subfamily. 96.5 0.0084 1.8E-07 47.9 6.5 20 19-38 3-22 (193)
110 PF08477 Miro: Miro-like prote 96.5 0.011 2.3E-07 43.4 6.5 20 19-38 2-21 (119)
111 cd04111 Rab39 Rab39 subfamily. 96.5 0.0076 1.7E-07 49.7 6.3 58 19-104 5-62 (211)
112 TIGR03156 GTP_HflX GTP-binding 96.5 0.036 7.7E-07 49.8 11.0 25 14-38 187-211 (351)
113 cd01889 SelB_euk SelB subfamil 96.5 0.016 3.5E-07 46.6 8.0 20 19-38 3-22 (192)
114 PRK03003 GTP-binding protein D 96.5 0.051 1.1E-06 50.5 12.2 24 15-38 37-60 (472)
115 PRK04213 GTP-binding protein; 96.5 0.009 2E-07 48.1 6.4 24 15-38 8-31 (201)
116 COG1162 Predicted GTPases [Gen 96.4 0.0039 8.4E-08 55.2 4.4 22 18-39 166-187 (301)
117 cd04140 ARHI_like ARHI subfami 96.4 0.0095 2.1E-07 46.4 6.2 20 19-38 4-23 (165)
118 cd01859 MJ1464 MJ1464. This f 96.4 0.017 3.7E-07 44.9 7.6 22 17-38 102-123 (156)
119 PLN03118 Rab family protein; P 96.4 0.011 2.3E-07 48.5 6.7 20 19-38 17-36 (211)
120 cd04146 RERG_RasL11_like RERG/ 96.4 0.0073 1.6E-07 46.8 5.5 20 19-38 2-21 (165)
121 cd01870 RhoA_like RhoA-like su 96.4 0.009 2E-07 46.6 5.9 20 19-38 4-23 (175)
122 COG4136 ABC-type uncharacteriz 96.4 0.0055 1.2E-07 50.2 4.7 25 17-41 29-53 (213)
123 cd01885 EF2 EF2 (for archaea a 96.4 0.027 5.8E-07 47.5 9.0 21 19-39 3-23 (222)
124 cd04177 RSR1 RSR1 subgroup. R 96.3 0.01 2.3E-07 46.3 6.0 20 19-38 4-23 (168)
125 cd04110 Rab35 Rab35 subfamily. 96.3 0.01 2.2E-07 48.2 6.2 23 16-38 6-28 (199)
126 cd04114 Rab30 Rab30 subfamily. 96.3 0.017 3.7E-07 44.6 7.2 25 14-38 5-29 (169)
127 cd04168 TetM_like Tet(M)-like 96.3 0.042 9E-07 46.6 10.0 21 19-39 2-22 (237)
128 PF00071 Ras: Ras family; Int 96.3 0.011 2.4E-07 45.4 6.0 58 19-105 2-59 (162)
129 cd04135 Tc10 TC10 subfamily. 96.3 0.013 2.8E-07 45.7 6.4 20 19-38 3-22 (174)
130 cd04125 RabA_like RabA-like su 96.3 0.013 2.8E-07 46.8 6.5 20 19-38 3-22 (188)
131 cd04167 Snu114p Snu114p subfam 96.3 0.05 1.1E-06 44.7 10.2 21 19-39 3-23 (213)
132 cd04107 Rab32_Rab38 Rab38/Rab3 96.3 0.014 3E-07 47.3 6.8 20 19-38 3-22 (201)
133 cd04137 RheB Rheb (Ras Homolog 96.3 0.0097 2.1E-07 46.8 5.6 20 19-38 4-23 (180)
134 cd01891 TypA_BipA TypA (tyrosi 96.3 0.0088 1.9E-07 48.2 5.4 23 16-38 2-24 (194)
135 cd01886 EF-G Elongation factor 96.3 0.056 1.2E-06 46.8 10.6 21 19-39 2-22 (270)
136 cd01884 EF_Tu EF-Tu subfamily. 96.3 0.039 8.4E-07 45.4 9.2 23 17-39 3-25 (195)
137 cd04166 CysN_ATPS CysN_ATPS su 96.3 0.025 5.5E-07 46.5 8.1 21 19-39 2-22 (208)
138 smart00174 RHO Rho (Ras homolo 96.3 0.01 2.2E-07 46.3 5.5 20 19-38 1-20 (174)
139 cd04170 EF-G_bact Elongation f 96.3 0.016 3.6E-07 49.4 7.2 21 19-39 2-22 (268)
140 PF03308 ArgK: ArgK protein; 96.2 0.0091 2E-07 52.0 5.6 39 4-42 17-55 (266)
141 PF13207 AAA_17: AAA domain; P 96.2 0.0043 9.3E-08 45.9 3.1 23 18-40 1-23 (121)
142 cd04132 Rho4_like Rho4-like su 96.2 0.015 3.4E-07 46.0 6.5 20 19-38 3-22 (187)
143 PRK03003 GTP-binding protein D 96.2 0.051 1.1E-06 50.5 10.5 23 16-38 211-233 (472)
144 CHL00071 tufA elongation facto 96.2 0.059 1.3E-06 49.2 10.7 27 13-39 9-35 (409)
145 cd01130 VirB11-like_ATPase Typ 96.2 0.022 4.7E-07 46.2 7.1 37 4-40 13-49 (186)
146 cd04176 Rap2 Rap2 subgroup. T 96.1 0.016 3.5E-07 44.6 6.0 20 19-38 4-23 (163)
147 PRK05291 trmE tRNA modificatio 96.1 0.039 8.4E-07 51.2 9.4 21 18-38 217-237 (449)
148 TIGR00235 udk uridine kinase. 96.1 0.0072 1.6E-07 49.7 4.1 29 13-41 3-31 (207)
149 PRK09518 bifunctional cytidyla 96.1 0.06 1.3E-06 52.6 11.0 23 16-38 450-472 (712)
150 cd01882 BMS1 Bms1. Bms1 is an 96.1 0.06 1.3E-06 45.1 9.6 27 13-39 36-62 (225)
151 cd04117 Rab15 Rab15 subfamily. 96.1 0.02 4.4E-07 44.6 6.3 20 19-38 3-22 (161)
152 TIGR03597 GTPase_YqeH ribosome 96.0 0.0076 1.6E-07 54.2 4.3 23 17-39 155-177 (360)
153 cd04157 Arl6 Arl6 subfamily. 96.0 0.015 3.2E-07 44.5 5.3 20 19-38 2-21 (162)
154 cd04169 RF3 RF3 subfamily. Pe 96.0 0.059 1.3E-06 46.6 9.5 24 16-39 2-25 (267)
155 smart00178 SAR Sar1p-like memb 96.0 0.021 4.7E-07 45.7 6.4 25 13-38 15-39 (184)
156 cd04153 Arl5_Arl8 Arl5/Arl8 su 96.0 0.026 5.6E-07 44.6 6.7 23 16-38 15-37 (174)
157 cd04147 Ras_dva Ras-dva subfam 96.0 0.089 1.9E-06 42.5 10.0 20 19-38 2-21 (198)
158 COG5019 CDC3 Septin family pro 96.0 0.018 4E-07 52.2 6.4 71 19-108 26-96 (373)
159 KOG1547|consensus 96.0 0.022 4.7E-07 49.7 6.5 71 19-109 49-119 (336)
160 cd04108 Rab36_Rab34 Rab34/Rab3 96.0 0.025 5.3E-07 44.8 6.4 20 19-38 3-22 (170)
161 cd04175 Rap1 Rap1 subgroup. T 95.9 0.022 4.8E-07 44.0 6.0 21 18-38 3-23 (164)
162 PF00485 PRK: Phosphoribulokin 95.9 0.0065 1.4E-07 49.4 3.1 24 18-41 1-24 (194)
163 cd01893 Miro1 Miro1 subfamily. 95.9 0.027 5.9E-07 43.9 6.5 20 19-38 3-22 (166)
164 PLN03110 Rab GTPase; Provision 95.9 0.023 4.9E-07 47.0 6.4 61 15-104 11-71 (216)
165 cd04156 ARLTS1 ARLTS1 subfamil 95.9 0.022 4.8E-07 43.6 5.8 20 19-38 2-21 (160)
166 PTZ00132 GTP-binding nuclear p 95.9 0.021 4.6E-07 46.7 6.0 62 15-105 8-69 (215)
167 cd01879 FeoB Ferrous iron tran 95.9 0.016 3.4E-07 44.1 4.8 18 21-38 1-18 (158)
168 TIGR00450 mnmE_trmE_thdF tRNA 95.8 0.022 4.8E-07 52.8 6.5 25 13-38 201-225 (442)
169 COG1160 Predicted GTPases [Gen 95.8 0.079 1.7E-06 49.3 10.0 100 17-149 4-110 (444)
170 PLN03108 Rab family protein; P 95.8 0.027 5.9E-07 46.2 6.3 22 17-38 7-28 (210)
171 COG1161 Predicted GTPases [Gen 95.8 0.031 6.8E-07 49.6 7.1 21 18-38 134-154 (322)
172 cd04161 Arl2l1_Arl13_like Arl2 95.8 0.16 3.5E-06 39.8 10.6 20 19-38 2-21 (167)
173 cd04154 Arl2 Arl2 subfamily. 95.8 0.034 7.4E-07 43.6 6.6 21 18-38 16-36 (173)
174 cd04141 Rit_Rin_Ric Rit/Rin/Ri 95.8 0.029 6.4E-07 44.4 6.2 20 19-38 5-24 (172)
175 PRK12299 obgE GTPase CgtA; Rev 95.8 0.057 1.2E-06 48.3 8.7 24 15-38 157-180 (335)
176 KOG2655|consensus 95.8 0.026 5.6E-07 51.3 6.5 70 19-108 24-93 (366)
177 cd04148 RGK RGK subfamily. Th 95.8 0.026 5.6E-07 47.0 6.1 20 19-38 3-22 (221)
178 PRK06696 uridine kinase; Valid 95.7 0.017 3.6E-07 48.2 4.8 37 5-41 11-47 (223)
179 PF00005 ABC_tran: ABC transpo 95.7 0.0079 1.7E-07 45.5 2.5 23 17-39 12-34 (137)
180 cd00878 Arf_Arl Arf (ADP-ribos 95.7 0.034 7.3E-07 42.6 6.1 20 19-38 2-21 (158)
181 cd04152 Arl4_Arl7 Arl4/Arl7 su 95.7 0.029 6.3E-07 44.8 5.8 23 15-38 3-25 (183)
182 cd04144 Ras2 Ras2 subfamily. 95.6 0.022 4.7E-07 45.8 5.0 20 19-38 2-21 (190)
183 cd04158 ARD1 ARD1 subfamily. 95.6 0.031 6.7E-07 43.9 5.8 20 19-38 2-21 (169)
184 cd02023 UMPK Uridine monophosp 95.6 0.0095 2.1E-07 48.3 2.9 23 18-40 1-23 (198)
185 cd04130 Wrch_1 Wrch-1 subfamil 95.6 0.044 9.4E-07 43.0 6.5 20 19-38 3-22 (173)
186 TIGR01393 lepA GTP-binding pro 95.6 0.1 2.2E-06 50.1 10.1 25 15-39 2-26 (595)
187 PRK09270 nucleoside triphospha 95.6 0.02 4.4E-07 47.9 4.7 31 12-42 29-59 (229)
188 cd01892 Miro2 Miro2 subfamily. 95.6 0.05 1.1E-06 42.9 6.7 25 14-38 2-26 (169)
189 cd02025 PanK Pantothenate kina 95.5 0.01 2.2E-07 49.8 2.8 24 18-41 1-24 (220)
190 TIGR02729 Obg_CgtA Obg family 95.5 0.088 1.9E-06 46.9 8.8 24 15-38 156-179 (329)
191 PRK13796 GTPase YqeH; Provisio 95.5 0.035 7.6E-07 50.1 6.3 22 18-39 162-183 (365)
192 PRK09866 hypothetical protein; 95.5 0.033 7.3E-07 54.3 6.4 24 15-38 68-91 (741)
193 COG1126 GlnQ ABC-type polar am 95.5 0.012 2.6E-07 50.3 3.0 22 17-38 29-50 (240)
194 cd04155 Arl3 Arl3 subfamily. 95.5 0.019 4.1E-07 44.6 4.0 29 9-38 8-36 (173)
195 PF07693 KAP_NTPase: KAP famil 95.5 0.024 5.1E-07 49.0 4.9 37 7-43 10-47 (325)
196 COG1120 FepC ABC-type cobalami 95.4 0.012 2.5E-07 51.2 2.9 27 17-43 29-55 (258)
197 cd04149 Arf6 Arf6 subfamily. 95.4 0.033 7.2E-07 43.9 5.3 21 18-38 11-31 (168)
198 PRK12735 elongation factor Tu; 95.4 0.084 1.8E-06 48.0 8.5 26 14-39 10-35 (396)
199 cd03261 ABC_Org_Solvent_Resist 95.4 0.013 2.8E-07 48.8 3.0 23 18-40 28-50 (235)
200 PRK05480 uridine/cytidine kina 95.4 0.02 4.3E-07 46.9 4.0 26 15-40 5-30 (209)
201 CHL00189 infB translation init 95.4 0.11 2.4E-06 51.2 9.8 25 14-38 242-266 (742)
202 TIGR01425 SRP54_euk signal rec 95.4 0.072 1.6E-06 49.4 8.0 29 14-42 98-126 (429)
203 PRK04004 translation initiatio 95.4 0.095 2E-06 50.3 9.0 21 18-38 8-28 (586)
204 cd04151 Arl1 Arl1 subfamily. 95.3 0.039 8.5E-07 42.4 5.4 20 19-38 2-21 (158)
205 cd04162 Arl9_Arfrp2_like Arl9/ 95.3 0.038 8.2E-07 43.4 5.3 20 19-38 2-21 (164)
206 cd04128 Spg1 Spg1p. Spg1p (se 95.3 0.061 1.3E-06 43.3 6.6 58 19-105 3-60 (182)
207 PTZ00301 uridine kinase; Provi 95.3 0.019 4.1E-07 48.1 3.7 26 15-40 2-27 (210)
208 cd04105 SR_beta Signal recogni 95.3 0.05 1.1E-06 44.7 6.2 20 19-38 3-22 (203)
209 PF13555 AAA_29: P-loop contai 95.3 0.019 4E-07 39.5 3.0 25 18-42 25-49 (62)
210 cd04134 Rho3 Rho3 subfamily. 95.3 0.048 1.1E-06 43.8 5.9 20 19-38 3-22 (189)
211 PLN02318 phosphoribulokinase/u 95.3 0.022 4.7E-07 55.1 4.4 37 4-40 53-89 (656)
212 TIGR00960 3a0501s02 Type II (G 95.3 0.015 3.3E-07 47.7 3.0 23 17-39 30-52 (216)
213 cd03225 ABC_cobalt_CbiO_domain 95.3 0.016 3.4E-07 47.3 3.0 24 17-40 28-51 (211)
214 cd02019 NK Nucleoside/nucleoti 95.3 0.018 3.9E-07 39.5 2.9 23 18-40 1-23 (69)
215 PRK12296 obgE GTPase CgtA; Rev 95.2 0.093 2E-06 49.6 8.4 24 15-38 158-181 (500)
216 cd03263 ABC_subfamily_A The AB 95.2 0.016 3.5E-07 47.6 3.0 22 18-39 30-51 (220)
217 TIGR01166 cbiO cobalt transpor 95.2 0.016 3.6E-07 46.6 3.0 22 18-39 20-41 (190)
218 PLN03071 GTP-binding nuclear p 95.2 0.092 2E-06 43.6 7.5 27 12-38 9-35 (219)
219 PRK07667 uridine kinase; Provi 95.2 0.034 7.4E-07 45.4 4.8 33 9-41 10-42 (193)
220 PTZ00416 elongation factor 2; 95.2 0.19 4.2E-06 50.1 11.0 36 3-39 7-42 (836)
221 cd04120 Rab12 Rab12 subfamily. 95.2 0.063 1.4E-06 44.4 6.5 58 19-105 3-60 (202)
222 COG3172 NadR Predicted ATPase/ 95.2 0.017 3.6E-07 47.4 2.9 26 16-41 8-33 (187)
223 TIGR03522 GldA_ABC_ATP gliding 95.2 0.027 5.9E-07 49.1 4.5 23 17-39 29-51 (301)
224 PRK10218 GTP-binding protein; 95.2 0.23 5E-06 48.0 11.2 78 15-107 4-81 (607)
225 cd03269 ABC_putative_ATPase Th 95.2 0.017 3.7E-07 47.2 3.0 23 17-39 27-49 (210)
226 cd03260 ABC_PstB_phosphate_tra 95.2 0.018 3.9E-07 47.6 3.2 23 18-40 28-50 (227)
227 PRK08233 hypothetical protein; 95.2 0.023 4.9E-07 44.8 3.6 26 16-41 3-28 (182)
228 cd03226 ABC_cobalt_CbiO_domain 95.2 0.017 3.8E-07 47.0 3.0 23 17-39 27-49 (205)
229 PRK09518 bifunctional cytidyla 95.2 0.27 5.8E-06 48.1 11.6 27 12-38 271-297 (712)
230 cd03265 ABC_DrrA DrrA is the A 95.2 0.018 3.8E-07 47.5 3.0 24 17-40 27-50 (220)
231 cd03224 ABC_TM1139_LivF_branch 95.2 0.017 3.6E-07 47.5 2.9 23 17-39 27-49 (222)
232 cd03238 ABC_UvrA The excision 95.1 0.019 4E-07 46.8 3.1 22 17-38 22-43 (176)
233 PRK12736 elongation factor Tu; 95.1 0.14 3E-06 46.6 9.0 28 13-40 9-36 (394)
234 TIGR02673 FtsE cell division A 95.1 0.018 4E-07 47.1 3.0 22 18-39 30-51 (214)
235 TIGR02211 LolD_lipo_ex lipopro 95.1 0.019 4E-07 47.3 3.0 23 18-40 33-55 (221)
236 PRK14241 phosphate transporter 95.1 0.018 4E-07 48.7 3.1 24 17-40 31-54 (258)
237 cd03292 ABC_FtsE_transporter F 95.1 0.019 4.2E-07 46.9 3.0 22 18-39 29-50 (214)
238 cd03297 ABC_ModC_molybdenum_tr 95.1 0.021 4.5E-07 46.9 3.2 25 15-40 23-47 (214)
239 TIGR02315 ABC_phnC phosphonate 95.1 0.019 4.1E-07 47.9 3.0 23 18-40 30-52 (243)
240 cd03264 ABC_drug_resistance_li 95.1 0.017 3.7E-07 47.2 2.7 23 18-40 27-49 (211)
241 PRK05433 GTP-binding protein L 95.1 0.15 3.3E-06 49.0 9.5 25 15-39 6-30 (600)
242 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.1 0.019 4.2E-07 47.1 3.0 23 18-40 32-54 (218)
243 cd04129 Rho2 Rho2 subfamily. 95.0 0.073 1.6E-06 42.6 6.3 21 18-38 3-23 (187)
244 cd03369 ABCC_NFT1 Domain 2 of 95.0 0.02 4.4E-07 46.7 3.1 24 17-40 35-58 (207)
245 COG0486 ThdF Predicted GTPase 95.0 0.064 1.4E-06 50.0 6.6 26 13-39 215-240 (454)
246 cd03254 ABCC_Glucan_exporter_l 95.0 0.02 4.3E-07 47.3 3.0 23 18-40 31-53 (229)
247 PF13238 AAA_18: AAA domain; P 95.0 0.021 4.6E-07 42.0 2.9 22 19-40 1-22 (129)
248 cd04131 Rnd Rnd subfamily. Th 95.0 0.074 1.6E-06 42.7 6.2 20 19-38 4-23 (178)
249 KOG2485|consensus 95.0 0.063 1.4E-06 48.0 6.2 83 19-127 146-229 (335)
250 PRK11629 lolD lipoprotein tran 95.0 0.02 4.4E-07 47.6 3.0 23 18-40 37-59 (233)
251 cd03257 ABC_NikE_OppD_transpor 95.0 0.02 4.4E-07 47.1 2.9 23 18-40 33-55 (228)
252 COG1160 Predicted GTPases [Gen 95.0 0.12 2.6E-06 48.1 8.2 24 16-39 178-201 (444)
253 cd03235 ABC_Metallic_Cations A 95.0 0.019 4.1E-07 47.0 2.8 23 18-40 27-49 (213)
254 TIGR02528 EutP ethanolamine ut 95.0 0.019 4.1E-07 43.4 2.6 20 19-38 3-22 (142)
255 cd03262 ABC_HisP_GlnQ_permease 95.0 0.021 4.6E-07 46.6 3.0 23 18-40 28-50 (213)
256 COG3842 PotA ABC-type spermidi 95.0 0.039 8.4E-07 50.0 4.9 23 17-39 32-54 (352)
257 cd01871 Rac1_like Rac1-like su 95.0 0.077 1.7E-06 42.2 6.1 20 19-38 4-23 (174)
258 cd01131 PilT Pilus retraction 95.0 0.024 5.3E-07 46.5 3.3 25 17-41 2-26 (198)
259 cd03216 ABC_Carb_Monos_I This 95.0 0.022 4.9E-07 45.1 3.0 23 17-39 27-49 (163)
260 cd03256 ABC_PhnC_transporter A 95.0 0.021 4.6E-07 47.5 3.0 23 18-40 29-51 (241)
261 PRK11124 artP arginine transpo 94.9 0.022 4.7E-07 47.7 3.0 24 17-40 29-52 (242)
262 cd03222 ABC_RNaseL_inhibitor T 94.9 0.02 4.4E-07 46.6 2.8 23 17-39 26-48 (177)
263 TIGR00073 hypB hydrogenase acc 94.9 0.036 7.8E-07 45.6 4.3 33 9-41 15-47 (207)
264 cd04143 Rhes_like Rhes_like su 94.9 0.21 4.4E-06 42.6 9.1 20 19-38 3-22 (247)
265 cd03293 ABC_NrtD_SsuB_transpor 94.9 0.022 4.7E-07 47.0 3.0 23 18-40 32-54 (220)
266 TIGR03608 L_ocin_972_ABC putat 94.9 0.022 4.9E-07 46.2 3.0 23 17-39 25-47 (206)
267 PRK14242 phosphate transporter 94.9 0.023 5E-07 47.8 3.2 22 18-39 34-55 (253)
268 cd03268 ABC_BcrA_bacitracin_re 94.9 0.022 4.9E-07 46.4 3.0 23 17-39 27-49 (208)
269 COG1100 GTPase SAR1 and relate 94.9 0.054 1.2E-06 43.9 5.2 23 17-39 6-28 (219)
270 PLN03126 Elongation factor Tu; 94.9 0.31 6.7E-06 45.8 10.9 28 12-39 77-104 (478)
271 cd03259 ABC_Carb_Solutes_like 94.9 0.023 4.9E-07 46.5 3.0 23 18-40 28-50 (213)
272 cd03258 ABC_MetN_methionine_tr 94.9 0.022 4.9E-07 47.2 3.0 23 18-40 33-55 (233)
273 PTZ00133 ADP-ribosylation fact 94.9 0.052 1.1E-06 43.5 5.0 20 19-38 20-39 (182)
274 cd03219 ABC_Mj1267_LivG_branch 94.9 0.021 4.6E-07 47.4 2.8 24 17-40 27-50 (236)
275 cd03218 ABC_YhbG The ABC trans 94.9 0.023 5E-07 47.1 3.0 24 17-40 27-50 (232)
276 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.9 0.023 4.9E-07 44.3 2.8 23 17-39 27-49 (144)
277 TIGR01978 sufC FeS assembly AT 94.9 0.022 4.9E-07 47.4 2.9 22 18-39 28-49 (243)
278 PRK10463 hydrogenase nickel in 94.9 0.032 6.9E-07 49.2 4.0 30 13-42 101-130 (290)
279 PRK11248 tauB taurine transpor 94.9 0.023 5E-07 48.3 3.0 24 17-40 28-51 (255)
280 PRK10584 putative ABC transpor 94.8 0.024 5.2E-07 46.9 3.0 23 17-39 37-59 (228)
281 TIGR02770 nickel_nikD nickel i 94.8 0.023 5E-07 47.3 2.9 24 17-40 13-36 (230)
282 TIGR01189 ccmA heme ABC export 94.8 0.025 5.3E-07 46.0 3.0 23 17-39 27-49 (198)
283 PRK14239 phosphate transporter 94.8 0.023 5.1E-07 47.7 3.0 22 18-39 33-54 (252)
284 PRK14262 phosphate ABC transpo 94.8 0.024 5.2E-07 47.6 3.0 23 18-40 31-53 (250)
285 PRK07560 elongation factor EF- 94.8 0.15 3.1E-06 50.1 8.8 37 2-39 7-43 (731)
286 PRK12297 obgE GTPase CgtA; Rev 94.8 0.13 2.7E-06 47.7 7.9 25 15-39 157-181 (424)
287 PRK00049 elongation factor Tu; 94.8 0.17 3.7E-06 46.0 8.7 26 14-39 10-35 (396)
288 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.8 0.024 5.2E-07 47.2 2.9 24 17-40 30-53 (238)
289 PRK14269 phosphate ABC transpo 94.8 0.025 5.5E-07 47.5 3.1 23 17-39 29-51 (246)
290 PRK13540 cytochrome c biogenes 94.8 0.026 5.6E-07 46.0 3.0 23 17-39 28-50 (200)
291 cd03301 ABC_MalK_N The N-termi 94.8 0.026 5.6E-07 46.2 3.0 23 18-40 28-50 (213)
292 cd03230 ABC_DR_subfamily_A Thi 94.8 0.026 5.7E-07 45.0 3.0 22 18-39 28-49 (173)
293 cd04121 Rab40 Rab40 subfamily. 94.8 0.1 2.2E-06 42.5 6.6 60 17-105 7-66 (189)
294 COG4559 ABC-type hemin transpo 94.8 0.022 4.9E-07 48.8 2.7 28 15-42 26-53 (259)
295 cd03245 ABCC_bacteriocin_expor 94.8 0.026 5.6E-07 46.4 3.0 22 18-39 32-53 (220)
296 TIGR00176 mobB molybdopterin-g 94.8 0.031 6.6E-07 44.5 3.3 24 18-41 1-24 (155)
297 PRK13541 cytochrome c biogenes 94.8 0.026 5.7E-07 45.7 3.0 22 18-39 28-49 (195)
298 cd03266 ABC_NatA_sodium_export 94.7 0.026 5.7E-07 46.3 3.0 23 17-39 32-54 (218)
299 PF03205 MobB: Molybdopterin g 94.7 0.029 6.4E-07 43.9 3.1 25 18-42 2-26 (140)
300 cd03246 ABCC_Protease_Secretio 94.7 0.03 6.5E-07 44.6 3.2 22 18-39 30-51 (173)
301 PRK14245 phosphate ABC transpo 94.7 0.028 6E-07 47.3 3.1 22 17-38 30-51 (250)
302 PRK14247 phosphate ABC transpo 94.7 0.027 5.8E-07 47.3 3.0 24 17-40 30-53 (250)
303 TIGR03864 PQQ_ABC_ATP ABC tran 94.7 0.027 5.8E-07 47.0 3.0 23 18-40 29-51 (236)
304 PRK09435 membrane ATPase/prote 94.7 0.043 9.4E-07 49.2 4.5 36 7-42 47-82 (332)
305 cd03244 ABCC_MRP_domain2 Domai 94.7 0.028 6E-07 46.2 3.0 24 17-40 31-54 (221)
306 cd03296 ABC_CysA_sulfate_impor 94.7 0.027 5.8E-07 47.1 3.0 23 18-40 30-52 (239)
307 cd03253 ABCC_ATM1_transporter 94.7 0.027 5.9E-07 46.7 3.0 24 17-40 28-51 (236)
308 cd03229 ABC_Class3 This class 94.7 0.029 6.3E-07 44.9 3.0 23 17-39 27-49 (178)
309 cd03251 ABCC_MsbA MsbA is an e 94.7 0.028 6.1E-07 46.6 3.0 24 17-40 29-52 (234)
310 PLN03127 Elongation factor Tu; 94.7 0.3 6.5E-06 45.4 10.0 28 13-40 58-85 (447)
311 TIGR01360 aden_kin_iso1 adenyl 94.7 0.036 7.9E-07 43.9 3.5 25 15-39 2-26 (188)
312 COG1124 DppF ABC-type dipeptid 94.7 0.069 1.5E-06 46.2 5.4 23 17-39 34-56 (252)
313 PRK14250 phosphate ABC transpo 94.6 0.028 6.1E-07 47.2 3.0 23 18-40 31-53 (241)
314 cd03295 ABC_OpuCA_Osmoprotecti 94.6 0.029 6.3E-07 47.0 3.0 23 18-40 29-51 (242)
315 PRK11264 putative amino-acid A 94.6 0.029 6.3E-07 47.0 3.0 23 18-40 31-53 (250)
316 cd04150 Arf1_5_like Arf1-Arf5- 94.6 0.066 1.4E-06 41.7 4.9 20 19-38 3-22 (159)
317 PTZ00369 Ras-like protein; Pro 94.6 0.093 2E-06 42.0 5.9 20 19-38 8-27 (189)
318 PRK10744 pstB phosphate transp 94.6 0.029 6.3E-07 47.6 3.0 24 17-40 40-63 (260)
319 PRK14248 phosphate ABC transpo 94.6 0.03 6.6E-07 47.7 3.2 22 18-39 49-70 (268)
320 PRK15177 Vi polysaccharide exp 94.6 0.029 6.3E-07 46.5 3.0 24 17-40 14-37 (213)
321 PRK10247 putative ABC transpor 94.6 0.03 6.5E-07 46.5 3.1 23 18-40 35-57 (225)
322 cd03236 ABC_RNaseL_inhibitor_d 94.6 0.029 6.3E-07 48.1 3.0 24 18-41 28-51 (255)
323 TIGR03740 galliderm_ABC gallid 94.6 0.03 6.5E-07 46.2 3.0 23 18-40 28-50 (223)
324 PF13521 AAA_28: AAA domain; P 94.6 0.024 5.3E-07 44.5 2.4 21 19-39 2-22 (163)
325 KOG1191|consensus 94.6 0.32 6.9E-06 46.0 9.9 24 14-38 267-290 (531)
326 PRK14270 phosphate ABC transpo 94.6 0.032 6.8E-07 47.0 3.2 24 17-40 31-54 (251)
327 TIGR00485 EF-Tu translation el 94.6 0.27 5.9E-06 44.6 9.4 28 13-40 9-36 (394)
328 PRK13539 cytochrome c biogenes 94.6 0.031 6.7E-07 45.8 3.0 23 17-39 29-51 (207)
329 PRK10908 cell division protein 94.6 0.031 6.7E-07 46.1 3.0 24 17-40 29-52 (222)
330 PRK14267 phosphate ABC transpo 94.6 0.03 6.6E-07 47.1 3.0 24 17-40 31-54 (253)
331 PRK15056 manganese/iron transp 94.6 0.029 6.4E-07 48.0 3.0 23 18-40 35-57 (272)
332 smart00177 ARF ARF-like small 94.6 0.094 2E-06 41.5 5.7 22 17-38 14-35 (175)
333 cd00071 GMPK Guanosine monopho 94.6 0.029 6.3E-07 43.5 2.7 22 18-39 1-22 (137)
334 cd03231 ABC_CcmA_heme_exporter 94.5 0.032 6.9E-07 45.6 3.0 23 17-39 27-49 (201)
335 TIGR02322 phosphon_PhnN phosph 94.5 0.037 8E-07 44.0 3.3 23 18-40 3-25 (179)
336 PRK14273 phosphate ABC transpo 94.5 0.031 6.8E-07 47.1 3.1 23 18-40 35-57 (254)
337 PRK14261 phosphate ABC transpo 94.5 0.031 6.6E-07 47.1 3.0 22 18-39 34-55 (253)
338 TIGR00972 3a0107s01c2 phosphat 94.5 0.031 6.7E-07 46.9 3.0 23 18-40 29-51 (247)
339 PRK14274 phosphate ABC transpo 94.5 0.033 7.2E-07 47.2 3.2 23 18-40 40-62 (259)
340 cd01874 Cdc42 Cdc42 subfamily. 94.5 0.11 2.3E-06 41.4 5.9 20 19-38 4-23 (175)
341 cd03223 ABCD_peroxisomal_ALDP 94.5 0.033 7.2E-07 44.3 3.0 23 18-40 29-51 (166)
342 PLN00116 translation elongatio 94.5 0.18 3.9E-06 50.3 8.8 37 2-39 6-42 (843)
343 smart00382 AAA ATPases associa 94.5 0.038 8.3E-07 39.8 3.1 23 18-40 4-26 (148)
344 cd01900 YchF YchF subfamily. 94.5 0.15 3.1E-06 44.6 7.1 21 19-39 1-21 (274)
345 PRK14235 phosphate transporter 94.5 0.034 7.4E-07 47.5 3.2 24 17-40 46-69 (267)
346 cd03215 ABC_Carb_Monos_II This 94.5 0.033 7.1E-07 44.8 2.9 22 18-39 28-49 (182)
347 cd03233 ABC_PDR_domain1 The pl 94.5 0.03 6.5E-07 45.9 2.7 24 17-40 34-57 (202)
348 PRK14240 phosphate transporter 94.5 0.033 7.2E-07 46.8 3.0 22 18-39 31-52 (250)
349 PRK11701 phnK phosphonate C-P 94.5 0.032 7E-07 47.2 3.0 23 18-40 34-56 (258)
350 PRK14256 phosphate ABC transpo 94.5 0.035 7.5E-07 46.8 3.1 22 18-39 32-53 (252)
351 cd03234 ABCG_White The White s 94.5 0.033 7.2E-07 46.1 3.0 24 17-40 34-57 (226)
352 TIGR01184 ntrCD nitrate transp 94.4 0.034 7.3E-07 46.4 3.0 24 17-40 12-35 (230)
353 cd03298 ABC_ThiQ_thiamine_tran 94.4 0.034 7.4E-07 45.4 3.0 24 17-40 25-48 (211)
354 TIGR00554 panK_bact pantothena 94.4 0.061 1.3E-06 47.4 4.7 27 15-41 61-87 (290)
355 cd01899 Ygr210 Ygr210 subfamil 94.4 0.27 5.8E-06 43.8 8.8 20 19-38 1-20 (318)
356 PF13173 AAA_14: AAA domain 94.4 0.043 9.3E-07 41.6 3.3 23 18-40 4-26 (128)
357 TIGR03410 urea_trans_UrtE urea 94.4 0.034 7.3E-07 46.1 2.9 25 17-41 27-51 (230)
358 TIGR00491 aIF-2 translation in 94.4 0.31 6.7E-06 47.0 9.8 23 17-39 5-27 (590)
359 PRK14268 phosphate ABC transpo 94.4 0.034 7.4E-07 47.1 3.0 22 18-39 40-61 (258)
360 PRK10895 lipopolysaccharide AB 94.4 0.035 7.6E-07 46.4 3.0 24 17-40 30-53 (241)
361 PRK13649 cbiO cobalt transport 94.4 0.033 7.2E-07 47.8 2.9 24 17-40 34-57 (280)
362 PRK00300 gmk guanylate kinase; 94.4 0.039 8.4E-07 44.7 3.2 26 15-40 4-29 (205)
363 PRK14272 phosphate ABC transpo 94.4 0.036 7.7E-07 46.6 3.0 23 18-40 32-54 (252)
364 PRK14253 phosphate ABC transpo 94.4 0.038 8.2E-07 46.4 3.2 23 18-40 31-53 (249)
365 TIGR02324 CP_lyasePhnL phospho 94.4 0.036 7.8E-07 45.7 3.0 22 18-39 36-57 (224)
366 PRK13648 cbiO cobalt transport 94.4 0.035 7.6E-07 47.4 3.0 23 18-40 37-59 (269)
367 PRK14251 phosphate ABC transpo 94.4 0.037 8.1E-07 46.5 3.1 24 17-40 31-54 (251)
368 PRK12317 elongation factor 1-a 94.4 0.23 5E-06 45.3 8.5 27 13-39 3-29 (425)
369 PRK10751 molybdopterin-guanine 94.4 0.049 1.1E-06 44.5 3.7 27 15-41 5-31 (173)
370 PRK10575 iron-hydroxamate tran 94.4 0.033 7.1E-07 47.5 2.8 23 18-40 39-61 (265)
371 COG4240 Predicted kinase [Gene 94.4 0.038 8.3E-07 47.9 3.1 30 15-44 49-78 (300)
372 cd03232 ABC_PDR_domain2 The pl 94.4 0.037 8E-07 44.9 3.0 23 17-39 34-56 (192)
373 PRK13651 cobalt transporter AT 94.4 0.034 7.5E-07 48.8 3.0 24 18-41 35-58 (305)
374 PRK13645 cbiO cobalt transport 94.4 0.035 7.6E-07 48.0 3.0 24 17-40 38-61 (289)
375 TIGR03263 guanyl_kin guanylate 94.3 0.039 8.4E-07 43.7 3.0 23 18-40 3-25 (180)
376 cd03214 ABC_Iron-Siderophores_ 94.3 0.039 8.4E-07 44.3 3.0 23 17-39 26-48 (180)
377 PRK13538 cytochrome c biogenes 94.3 0.037 8.1E-07 45.2 3.0 23 18-40 29-51 (204)
378 cd03294 ABC_Pro_Gly_Bertaine T 94.3 0.037 7.9E-07 47.4 3.0 24 17-40 51-74 (269)
379 PRK11300 livG leucine/isoleuci 94.3 0.036 7.8E-07 46.6 2.9 24 17-40 32-55 (255)
380 PRK11247 ssuB aliphatic sulfon 94.3 0.037 8.1E-07 47.3 3.0 23 18-40 40-62 (257)
381 PRK09544 znuC high-affinity zi 94.3 0.038 8.1E-07 47.0 3.0 24 17-40 31-54 (251)
382 cd03217 ABC_FeS_Assembly ABC-t 94.3 0.038 8.2E-07 45.1 2.9 23 17-39 27-49 (200)
383 PRK01889 GTPase RsgA; Reviewed 94.3 0.04 8.8E-07 49.6 3.4 24 17-40 196-219 (356)
384 COG2262 HflX GTPases [General 94.3 0.11 2.4E-06 47.8 6.2 71 7-107 183-253 (411)
385 PRK06547 hypothetical protein; 94.3 0.077 1.7E-06 43.0 4.7 36 3-40 4-39 (172)
386 PRK13548 hmuV hemin importer A 94.3 0.037 8E-07 47.0 3.0 23 18-40 30-52 (258)
387 PRK14255 phosphate ABC transpo 94.3 0.038 8.3E-07 46.4 3.0 22 18-39 33-54 (252)
388 PRK11231 fecE iron-dicitrate t 94.3 0.037 8E-07 46.7 2.9 23 18-40 30-52 (255)
389 cd03252 ABCC_Hemolysin The ABC 94.3 0.038 8.3E-07 45.9 3.0 23 18-40 30-52 (237)
390 PLN03046 D-glycerate 3-kinase; 94.3 0.059 1.3E-06 50.2 4.4 26 15-40 211-236 (460)
391 cd03237 ABC_RNaseL_inhibitor_d 94.3 0.038 8.2E-07 47.0 3.0 24 17-40 26-49 (246)
392 PRK15112 antimicrobial peptide 94.3 0.038 8.1E-07 47.2 3.0 23 18-40 41-63 (267)
393 PRK14259 phosphate ABC transpo 94.3 0.038 8.3E-07 47.3 3.0 22 18-39 41-62 (269)
394 PRK13632 cbiO cobalt transport 94.3 0.038 8.3E-07 47.3 3.0 23 18-40 37-59 (271)
395 PRK14249 phosphate ABC transpo 94.2 0.04 8.6E-07 46.4 3.0 23 18-40 32-54 (251)
396 PRK09493 glnQ glutamine ABC tr 94.2 0.04 8.6E-07 46.0 3.0 24 17-40 28-51 (240)
397 TIGR01277 thiQ thiamine ABC tr 94.2 0.04 8.8E-07 45.2 3.0 24 17-40 25-48 (213)
398 PF01637 Arch_ATPase: Archaeal 94.2 0.028 6E-07 45.3 2.0 36 5-40 8-44 (234)
399 KOG0410|consensus 94.2 0.068 1.5E-06 48.3 4.5 91 9-134 171-266 (410)
400 TIGR02769 nickel_nikE nickel i 94.2 0.039 8.6E-07 47.0 3.0 23 18-40 39-61 (265)
401 PRK09580 sufC cysteine desulfu 94.2 0.037 8E-07 46.3 2.7 23 17-39 28-50 (248)
402 PRK14237 phosphate transporter 94.2 0.043 9.3E-07 46.9 3.2 24 17-40 47-70 (267)
403 CHL00131 ycf16 sulfate ABC tra 94.2 0.037 8.1E-07 46.4 2.7 23 17-39 34-56 (252)
404 cd03247 ABCC_cytochrome_bd The 94.2 0.044 9.4E-07 43.8 3.0 22 18-39 30-51 (178)
405 PRK10771 thiQ thiamine transpo 94.2 0.04 8.7E-07 45.8 2.9 24 17-40 26-49 (232)
406 PRK09554 feoB ferrous iron tra 94.2 0.33 7.1E-06 48.2 9.6 21 18-38 5-25 (772)
407 PRK11831 putative ABC transpor 94.2 0.04 8.6E-07 47.1 2.9 23 18-40 35-57 (269)
408 PLN02796 D-glycerate 3-kinase 94.2 0.052 1.1E-06 49.1 3.8 27 15-41 99-125 (347)
409 TIGR03005 ectoine_ehuA ectoine 94.2 0.041 8.8E-07 46.3 3.0 23 18-40 28-50 (252)
410 PRK13644 cbiO cobalt transport 94.2 0.041 8.9E-07 47.3 3.0 24 17-40 29-52 (274)
411 PRK13638 cbiO cobalt transport 94.2 0.038 8.3E-07 47.2 2.8 23 18-40 29-51 (271)
412 PRK09984 phosphonate/organopho 94.2 0.04 8.8E-07 46.7 3.0 23 18-40 32-54 (262)
413 TIGR00484 EF-G translation elo 94.2 0.36 7.9E-06 47.0 9.9 26 14-39 8-33 (689)
414 TIGR02524 dot_icm_DotB Dot/Icm 94.2 0.045 9.7E-07 49.5 3.4 27 15-41 133-159 (358)
415 PRK14238 phosphate transporter 94.2 0.044 9.5E-07 47.0 3.2 24 17-40 51-74 (271)
416 PRK13646 cbiO cobalt transport 94.2 0.041 8.9E-07 47.6 3.0 24 17-40 34-57 (286)
417 PRK14244 phosphate ABC transpo 94.2 0.045 9.7E-07 46.1 3.2 22 18-39 33-54 (251)
418 PRK11614 livF leucine/isoleuci 94.1 0.039 8.4E-07 46.0 2.8 23 18-40 33-55 (237)
419 TIGR02323 CP_lyasePhnK phospho 94.1 0.042 9.1E-07 46.2 3.0 23 18-40 31-53 (253)
420 cd01888 eIF2_gamma eIF2-gamma 94.1 0.37 7.9E-06 39.4 8.5 22 18-39 2-23 (203)
421 COG3839 MalK ABC-type sugar tr 94.1 0.088 1.9E-06 47.5 5.1 22 18-39 31-52 (338)
422 PF13191 AAA_16: AAA ATPase do 94.1 0.066 1.4E-06 41.9 3.9 31 12-42 20-50 (185)
423 PF13671 AAA_33: AAA domain; P 94.1 0.048 1E-06 41.2 3.0 23 18-40 1-23 (143)
424 PRK13543 cytochrome c biogenes 94.1 0.043 9.3E-07 45.2 2.9 22 18-39 39-60 (214)
425 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.1 0.042 9.2E-07 45.7 2.9 24 17-40 49-72 (224)
426 cd03248 ABCC_TAP TAP, the Tran 94.1 0.045 9.8E-07 45.2 3.1 23 18-40 42-64 (226)
427 cd03290 ABCC_SUR1_N The SUR do 94.1 0.045 9.7E-07 45.0 3.0 24 17-40 28-51 (218)
428 PRK13635 cbiO cobalt transport 94.1 0.042 9.2E-07 47.4 3.0 23 18-40 35-57 (279)
429 PRK05124 cysN sulfate adenylyl 94.1 0.35 7.6E-06 45.2 9.3 27 14-40 25-51 (474)
430 PRK13641 cbiO cobalt transport 94.1 0.043 9.4E-07 47.5 3.0 24 17-40 34-57 (287)
431 cd00820 PEPCK_HprK Phosphoenol 94.1 0.048 1E-06 41.3 2.9 21 17-37 16-36 (107)
432 PRK13833 conjugal transfer pro 94.1 0.048 1E-06 48.7 3.3 27 13-40 142-168 (323)
433 cd03267 ABC_NatA_like Similar 94.1 0.045 9.7E-07 45.9 3.0 23 17-39 48-70 (236)
434 cd02028 UMPK_like Uridine mono 94.1 0.045 9.8E-07 44.3 2.9 24 18-41 1-24 (179)
435 PRK14266 phosphate ABC transpo 94.1 0.048 1E-06 45.8 3.2 23 17-39 30-52 (250)
436 PRK13643 cbiO cobalt transport 94.0 0.043 9.3E-07 47.6 2.9 23 18-40 34-56 (288)
437 TIGR00490 aEF-2 translation el 94.0 0.27 5.8E-06 48.3 8.7 38 1-39 5-42 (720)
438 cd03250 ABCC_MRP_domain1 Domai 94.0 0.047 1E-06 44.4 3.0 23 18-40 33-55 (204)
439 PRK10619 histidine/lysine/argi 94.0 0.046 9.9E-07 46.3 3.0 24 17-40 32-55 (257)
440 PRK14243 phosphate transporter 94.0 0.049 1.1E-06 46.5 3.2 23 17-39 37-59 (264)
441 cd04103 Centaurin_gamma Centau 94.0 0.18 3.8E-06 39.5 6.2 20 19-38 3-22 (158)
442 PRK09601 GTP-binding protein Y 94.0 0.17 3.6E-06 46.1 6.7 21 18-38 4-24 (364)
443 PRK13547 hmuV hemin importer A 94.0 0.045 9.8E-07 47.2 2.9 23 18-40 29-51 (272)
444 TIGR01188 drrA daunorubicin re 94.0 0.046 9.9E-07 47.7 3.0 25 17-41 20-44 (302)
445 cd03228 ABCC_MRP_Like The MRP 94.0 0.051 1.1E-06 43.2 3.1 23 17-39 29-51 (171)
446 PRK13640 cbiO cobalt transport 94.0 0.047 1E-06 47.1 3.0 24 17-40 34-57 (282)
447 TIGR03771 anch_rpt_ABC anchore 94.0 0.048 1E-06 45.3 2.9 24 17-40 7-30 (223)
448 cd03300 ABC_PotA_N PotA is an 94.0 0.05 1.1E-06 45.3 3.0 24 17-40 27-50 (232)
449 PRK10253 iron-enterobactin tra 94.0 0.044 9.6E-07 46.7 2.8 23 18-40 35-57 (265)
450 cd04102 RabL3 RabL3 (Rab-like3 93.9 0.21 4.7E-06 41.3 6.8 20 19-38 3-22 (202)
451 PRK14265 phosphate ABC transpo 93.9 0.049 1.1E-06 46.8 3.0 22 18-39 48-69 (274)
452 TIGR03411 urea_trans_UrtD urea 93.9 0.05 1.1E-06 45.4 3.0 24 17-40 29-52 (242)
453 PRK10078 ribose 1,5-bisphospho 93.9 0.054 1.2E-06 43.7 3.1 23 18-40 4-26 (186)
454 PRK13652 cbiO cobalt transport 93.9 0.05 1.1E-06 46.7 3.0 24 17-40 31-54 (277)
455 PRK14252 phosphate ABC transpo 93.8 0.053 1.1E-06 46.1 3.1 23 17-39 43-65 (265)
456 PRK13650 cbiO cobalt transport 93.8 0.052 1.1E-06 46.8 3.0 24 17-40 34-57 (279)
457 TIGR01288 nodI ATP-binding ABC 93.8 0.051 1.1E-06 47.4 3.0 24 17-40 31-54 (303)
458 PRK09602 translation-associate 93.8 0.41 8.8E-06 43.9 8.9 21 18-38 3-23 (396)
459 PRK14260 phosphate ABC transpo 93.8 0.056 1.2E-06 45.8 3.2 24 17-40 34-57 (259)
460 KOG0086|consensus 93.8 0.11 2.3E-06 42.6 4.5 58 18-104 11-68 (214)
461 PRK03695 vitamin B12-transport 93.8 0.048 1E-06 46.1 2.7 24 17-40 23-46 (248)
462 COG1101 PhnK ABC-type uncharac 93.8 0.046 1E-06 47.0 2.6 26 17-42 33-58 (263)
463 PRK14271 phosphate ABC transpo 93.8 0.054 1.2E-06 46.6 3.0 24 17-40 48-71 (276)
464 TIGR02982 heterocyst_DevA ABC 93.8 0.057 1.2E-06 44.5 3.0 23 17-39 32-54 (220)
465 smart00053 DYNc Dynamin, GTPas 93.8 0.048 1E-06 46.7 2.6 22 18-39 28-49 (240)
466 TIGR01394 TypA_BipA GTP-bindin 93.7 0.3 6.5E-06 47.0 8.3 22 18-39 3-24 (594)
467 PRK10418 nikD nickel transport 93.7 0.055 1.2E-06 45.7 3.0 23 18-40 31-53 (254)
468 PRK14258 phosphate ABC transpo 93.7 0.056 1.2E-06 45.9 3.0 24 17-40 34-57 (261)
469 PLN02348 phosphoribulokinase 93.7 0.1 2.2E-06 48.0 4.8 28 14-41 47-74 (395)
470 PRK14275 phosphate ABC transpo 93.7 0.056 1.2E-06 46.8 3.0 23 17-39 66-88 (286)
471 PRK11153 metN DL-methionine tr 93.7 0.054 1.2E-06 48.3 3.0 24 17-40 32-55 (343)
472 PRK13647 cbiO cobalt transport 93.7 0.055 1.2E-06 46.5 3.0 24 17-40 32-55 (274)
473 PRK14254 phosphate ABC transpo 93.7 0.057 1.2E-06 46.8 3.0 23 18-40 67-89 (285)
474 PRK13631 cbiO cobalt transport 93.7 0.056 1.2E-06 47.8 3.0 23 18-40 54-76 (320)
475 TIGR03873 F420-0_ABC_ATP propo 93.7 0.054 1.2E-06 45.8 2.8 24 17-40 28-51 (256)
476 cd03213 ABCG_EPDR ABCG transpo 93.7 0.058 1.3E-06 43.9 2.9 23 17-39 36-58 (194)
477 COG1121 ZnuC ABC-type Mn/Zn tr 93.7 0.058 1.3E-06 46.8 3.0 26 17-42 31-56 (254)
478 TIGR02034 CysN sulfate adenyly 93.7 0.26 5.7E-06 44.9 7.4 22 19-40 3-24 (406)
479 PRK14236 phosphate transporter 93.6 0.063 1.4E-06 46.0 3.1 23 17-39 52-74 (272)
480 PRK13637 cbiO cobalt transport 93.6 0.059 1.3E-06 46.7 3.0 24 18-41 35-58 (287)
481 TIGR02782 TrbB_P P-type conjug 93.6 0.067 1.4E-06 47.1 3.3 26 15-41 132-157 (299)
482 cd03288 ABCC_SUR2 The SUR doma 93.6 0.063 1.4E-06 45.5 3.1 23 18-40 49-71 (257)
483 PRK09825 idnK D-gluconate kina 93.6 0.071 1.5E-06 43.2 3.2 24 17-40 4-27 (176)
484 PRK07429 phosphoribulokinase; 93.6 0.082 1.8E-06 47.2 3.9 28 14-41 6-33 (327)
485 PF00025 Arf: ADP-ribosylation 93.5 0.17 3.7E-06 40.4 5.4 23 16-38 14-36 (175)
486 PF00437 T2SE: Type II/IV secr 93.5 0.055 1.2E-06 46.0 2.6 39 4-42 115-153 (270)
487 cd00009 AAA The AAA+ (ATPases 93.5 0.085 1.8E-06 38.5 3.3 24 17-40 20-43 (151)
488 PRK10512 selenocysteinyl-tRNA- 93.5 0.41 8.8E-06 46.3 8.8 21 18-38 2-22 (614)
489 PRK12727 flagellar biosynthesi 93.5 0.19 4.1E-06 48.1 6.4 25 16-40 350-374 (559)
490 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 93.5 0.23 5E-06 40.1 6.1 20 19-38 8-27 (182)
491 PRK13634 cbiO cobalt transport 93.5 0.062 1.3E-06 46.6 3.0 23 18-40 35-57 (290)
492 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 93.5 0.2 4.3E-06 42.2 5.9 20 19-38 4-23 (222)
493 PRK13546 teichoic acids export 93.5 0.063 1.4E-06 46.2 2.9 24 17-40 51-74 (264)
494 COG1134 TagH ABC-type polysacc 93.5 0.057 1.2E-06 46.6 2.6 22 18-39 55-76 (249)
495 PRK14246 phosphate ABC transpo 93.5 0.064 1.4E-06 45.7 3.0 23 18-40 38-60 (257)
496 cd01129 PulE-GspE PulE/GspE Th 93.5 0.076 1.6E-06 45.8 3.4 30 12-41 76-105 (264)
497 cd04165 GTPBP1_like GTPBP1-lik 93.5 0.38 8.2E-06 40.4 7.6 21 19-39 2-22 (224)
498 PRK13351 elongation factor G; 93.5 0.41 8.9E-06 46.5 8.8 25 15-39 7-31 (687)
499 TIGR02868 CydC thiol reductant 93.5 0.06 1.3E-06 50.2 3.0 22 18-39 363-384 (529)
500 cd04126 Rab20 Rab20 subfamily. 93.5 0.2 4.4E-06 42.0 5.9 20 19-38 3-22 (220)
No 1
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=100.00 E-value=1.1e-50 Score=347.95 Aligned_cols=160 Identities=40% Similarity=0.532 Sum_probs=140.5
Q ss_pred cHHHHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEee
Q psy5032 2 AEYVKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWS 81 (193)
Q Consensus 2 ~e~~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~ 81 (193)
.|+|+..++.+++||+||||+|++|||||||||+|++. ..||+|+++.+|||+|||||+
T Consensus 7 ~~~al~~l~~~~~~v~vvsi~G~~rtGKSfLln~l~~~---------------------~~gF~~~~~~~~~T~Giw~w~ 65 (260)
T PF02263_consen 7 NEEALEILQQIDQPVAVVSIVGPYRTGKSFLLNQLLGP---------------------QSGFSWGPTVEPCTKGIWMWS 65 (260)
T ss_dssp -HHHHHHHCTTTSBEEEEEEEEETTSSHHHHHHHHCCB---------------------SSSSESSSCSSST-SCEEEEC
T ss_pred CHHHHHHHhcCCCCEEEEEeecCCccchHHHHHHHhcc---------------------cccccccCCCCCCCcceeeee
Confidence 68999999999999999999999999999999999972 479999999999999999999
Q ss_pred ccceecCCCCCccEEEEEecccccC-ccccccchhHHHHHHHhhhceEEEeCcccCChhHHHHHHHHHHHHHhhh-----
Q psy5032 82 HVYIATLPTGEKAAVILLDTQGTFD-SESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLAL----- 155 (193)
Q Consensus 82 ~p~~~~~~~g~~~~vlllDTEG~~~-~~~~~~~d~~if~L~~LLSS~~IyN~~~~i~~~~l~~L~l~~~~~~~~~----- 155 (193)
+| .+.+++++|+||||||++| ...+.++|++||+|++||||++|||+++.|+++++++|+++++++++++
T Consensus 66 ~~----~~~~~~~~v~llDteG~~~~~~~~~~~d~~if~Ls~LLSS~~IyN~~~~i~~~~l~~L~~~~~l~~~i~~~~~~ 141 (260)
T PF02263_consen 66 EP----LPDGEKVAVVLLDTEGLGDVEQSDEKYDAKIFALSMLLSSVLIYNSMGNIDEDDLDQLELFTELAKHIRVKYGD 141 (260)
T ss_dssp CE-----TTSTCEEEEEEEEECBTTTTCCCCHHCHHHHHHHHHH-SEEEEEECSSSSHHHHHCCHHHHHHHHHHHHTHHH
T ss_pred cc----cccccceeEEEecchhccccccCcccccHHHHHHHHHHhCceeeCCCCccchhHHHHHHHHHHHHHHHHHhccc
Confidence 99 4688899999999999999 4457788999999999999999999999999999999999999988764
Q ss_pred ---hcCCCCCCCceEEEEEcCCCcCCCccccccCC
Q psy5032 156 ---ADTGTKPFQRLQFLAVNNNNPFRSPVQVQLTG 187 (193)
Q Consensus 156 ---~~~~~~~fp~l~wlvRD~~~~~~~~~G~~~t~ 187 (193)
.+....+||+|+||||||+++++++ |..+|+
T Consensus 142 ~~~~~~~~~~fp~l~wlvRDf~~~~~~~-~~~~t~ 175 (260)
T PF02263_consen 142 SADSEDLGKPFPSLVWLVRDFSLELEDD-GGKITP 175 (260)
T ss_dssp HHHHHCTTTTCEEEEEEEECE-SCTCCT-TECHHH
T ss_pred ccchhhhcccchHHHHHHhhccchhhhc-cCCCCH
Confidence 2235789999999999999998765 566553
No 2
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=100.00 E-value=9.4e-39 Score=268.57 Aligned_cols=147 Identities=35% Similarity=0.370 Sum_probs=131.0
Q ss_pred CCCCCceEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCC
Q psy5032 11 RPSDNDSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPT 90 (193)
Q Consensus 11 ~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~ 90 (193)
.++.||+||||+|++|+|||||||+|++. ..+|+++++..+||+|||||..|+. .
T Consensus 2 ~~~~~v~vvsv~G~~~sGKS~llN~l~~~---------------------~~~f~~~~~~~~~T~gi~~~~~~~~----~ 56 (224)
T cd01851 2 KAGFPVAVVSVFGPQSSGKSFLLNHLFGT---------------------LSGFDVMDTSQQTTKGIWMWSVPFK----L 56 (224)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHhCC---------------------CCCeEecCCCCCCccceEEEecccc----C
Confidence 46789999999999999999999999983 2699999999999999999999974 3
Q ss_pred CCccEEEEEecccccCccccc-cchhHHHHHHHhhhceEEEeCcccCChhHHHHHHHHHHHH----HhhhhcCCCCCCCc
Q psy5032 91 GEKAAVILLDTQGTFDSESTV-RDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYG----RLALADTGTKPFQR 165 (193)
Q Consensus 91 g~~~~vlllDTEG~~~~~~~~-~~d~~if~L~~LLSS~~IyN~~~~i~~~~l~~L~l~~~~~----~~~~~~~~~~~fp~ 165 (193)
+++..|++|||||+.+.+++. .++.+||+++++|||++|||+.+.+++.++++|+.+++.+ ..........+||+
T Consensus 57 ~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ 136 (224)
T cd01851 57 GKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPL 136 (224)
T ss_pred CCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCc
Confidence 566789999999999999988 9999999999999999999999999999999999999975 22223446789999
Q ss_pred eEEEEEcCCCcCCCccc
Q psy5032 166 LQFLAVNNNNPFRSPVQ 182 (193)
Q Consensus 166 l~wlvRD~~~~~~~~~G 182 (193)
|+|+||||+++.+++.+
T Consensus 137 ll~vvRD~~~~~~~~~~ 153 (224)
T cd01851 137 LLFVVRDFSLDTPLENL 153 (224)
T ss_pred eEEEEecCcCCcccccc
Confidence 99999999999887765
No 3
>KOG2037|consensus
Probab=99.94 E-value=2.2e-28 Score=227.71 Aligned_cols=178 Identities=44% Similarity=0.598 Sum_probs=160.6
Q ss_pred HHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHhhhhhcc-------------------------c------c----cCC
Q psy5032 5 VKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYMNFTY-------------------------I------E----EAP 49 (193)
Q Consensus 5 ~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~-------------------------~------~----~~~ 49 (193)
|+.+++.+.+|++||+|+|.+|+||||+||.+++.-.... + . +..
T Consensus 21 a~~~l~~~~~p~~Vv~i~g~~~~gksfiln~la~~~~gf~~~s~~~~~~~~~w~w~~p~~k~~~~~l~Lld~eg~~~~~~ 100 (552)
T KOG2037|consen 21 ALEILQAIKQPVAVVAIVGLYRTGKSFILNQLAGKRIGFSVASTDKPVTKGIWMWCVPHGKSFLLNLVLLDTEGLKGDNE 100 (552)
T ss_pred chhHHhhccCCceEEEEEEEEcCCCceehhhhHhhhcCCCcccccccceeeEEEEEeecCCccchhhhhhccccccCCcc
Confidence 8999999999999999999999999999999998532211 0 0 123
Q ss_pred CCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEEEEecccccCccccccchhHHHHHHHhhhceEE
Q psy5032 50 SGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQI 129 (193)
Q Consensus 50 ~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vlllDTEG~~~~~~~~~~d~~if~L~~LLSS~~I 129 (193)
..+|+. ...+..+|.|..+.++.|.|||||+.|++.+.++|.++++.++||+|.++..++...+...|+++++.||++|
T Consensus 101 ~~~w~~-~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~k~~~~l~~~~~a~~~~~~~~~~~p~fa~tt~~~slqi 179 (552)
T KOG2037|consen 101 NDDWIF-ALAPLLSSTWVYGSEGTINGIAMWQLPFVTELTEGIKVASSLMDTQGAFDDQSTFRSCFPDFALTTMDSSLQI 179 (552)
T ss_pred chhhhh-ccchhhcceeeccCCcccchheecccceeeecCCcceeccccccccccccccccHHHhcchhhceeeeeehhh
Confidence 445766 5678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcccCChhHHHHHHHHHHHHHhhhhcCCCCCCCceEEEEEcCCCcCCCcccc
Q psy5032 130 YNLSQNIQEDDLQHLQLFTEYGRLALADTGTKPFQRLQFLAVNNNNPFRSPVQV 183 (193)
Q Consensus 130 yN~~~~i~~~~l~~L~l~~~~~~~~~~~~~~~~fp~l~wlvRD~~~~~~~~~G~ 183 (193)
||....|+++++++|++|+++++....+.+.+||++|.+++|||+++.+...|.
T Consensus 180 ~~~~q~i~ed~l~~l~l~~~~g~~~l~~~~~kp~q~L~~~~~~~s~~~c~~~~~ 233 (552)
T KOG2037|consen 180 YNDSQNIQEDDLQHLSLFTEYGRLALAHLFKKPFQDLKFLVRDQSFPFCSYIGE 233 (552)
T ss_pred hcccCcCCHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhhhhhhHHHHH
Confidence 999999999999999999999999888999999999999999999998877664
No 4
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=99.67 E-value=1.1e-16 Score=155.07 Aligned_cols=125 Identities=23% Similarity=0.301 Sum_probs=94.8
Q ss_pred eCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecC--CCCcccceEEEeeccceecCCCCCccEEEEE
Q psy5032 22 KSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRG--GSERDTTGILMWSHVYIATLPTGEKAAVILL 99 (193)
Q Consensus 22 ~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~--~~~~~T~GIwmw~~p~~~~~~~g~~~~vlll 99 (193)
+|+|.||||+|||.|++ ..|.+-+ +..+||+||||-.-+... ...-.+++|
T Consensus 1 ~g~qssgkstlln~lf~-----------------------t~f~~m~~~~r~qtt~gi~~~~~~~~~----~~~~~~~v~ 53 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFG-----------------------TQFDVMDESGRQQTTKGIWMAKAKEVE----SSESNILVL 53 (742)
T ss_pred CCCCCCcHHHHHHHHHC-----------------------CCccccccccccccchhhHHHhccccc----cCCCceEEE
Confidence 59999999999999998 3566544 356799999998554321 223469999
Q ss_pred ecccccCccc----cccchhHHHHHHHhhhceEEEeCc----ccCChhHHHHHHHHHHHH-HhhhhcCCCCCCCceEEEE
Q psy5032 100 DTQGTFDSES----TVRDCATVFALSTMLSSIQIYNLS----QNIQEDDLQHLQLFTEYG-RLALADTGTKPFQRLQFLA 170 (193)
Q Consensus 100 DTEG~~~~~~----~~~~d~~if~L~~LLSS~~IyN~~----~~i~~~~l~~L~l~~~~~-~~~~~~~~~~~fp~l~wlv 170 (193)
|+||..+.++ +++..+.+|+|++ |.++|.|+. |.-+...+..|+.+.+.. +++..+....+=+.|+|||
T Consensus 54 d~eg~d~~er~~~~~fe~~~alf~la~--s~~~iiN~w~~~iG~~~~an~~lLktvfevnl~lf~~~~~~~~k~~llfvi 131 (742)
T PF05879_consen 54 DVEGTDGRERGEDQDFERKSALFALAV--SDVLIINMWEHDIGRYQGANMGLLKTVFEVNLQLFGKSKSNDRKTLLLFVI 131 (742)
T ss_pred eCCCCCchhhccccchHHHHHHHHHHh--hhheeeehhhhhhhhhcccchHHHHHHHHHHHHHHhhcccCCCCceEEEEE
Confidence 9999999886 4455677777765 999999995 667778888888888865 5554333345667899999
Q ss_pred EcCCC
Q psy5032 171 VNNNN 175 (193)
Q Consensus 171 RD~~~ 175 (193)
|||.-
T Consensus 132 RD~~~ 136 (742)
T PF05879_consen 132 RDHTG 136 (742)
T ss_pred eeCCC
Confidence 99985
No 5
>KOG2203|consensus
Probab=99.58 E-value=1.6e-15 Score=140.82 Aligned_cols=129 Identities=23% Similarity=0.291 Sum_probs=94.8
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCcc
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKA 94 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~ 94 (193)
..+||||+|++.||||+|||.|++... .-| +.|. +....|+|||+-.- .|-+-
T Consensus 36 ~YhVVavmG~QSSGKSTLLN~LFgTnF----------~~M-------DA~~---gRqQTTKGIWlar~-------~~i~p 88 (772)
T KOG2203|consen 36 SYHVVAVMGSQSSGKSTLLNHLFGTNF----------REM-------DAFK---GRQQTTKGIWLARC-------AGIEP 88 (772)
T ss_pred ceeEEEEecCcccchHHHHHHHhccCh----------HHH-------Hhhh---ccccccchhhHHhh-------cCCCC
Confidence 678999999999999999999998421 112 2332 46779999998732 33334
Q ss_pred EEEEEecccccCccc----cccchhHHHHHHHhhhceEEEeCc----ccCChhHHHHHHHHHHHH-HhhhhcCCCCCCCc
Q psy5032 95 AVILLDTQGTFDSES----TVRDCATVFALSTMLSSIQIYNLS----QNIQEDDLQHLQLFTEYG-RLALADTGTKPFQR 165 (193)
Q Consensus 95 ~vlllDTEG~~~~~~----~~~~d~~if~L~~LLSS~~IyN~~----~~i~~~~l~~L~l~~~~~-~~~~~~~~~~~fp~ 165 (193)
.+++||.||..+.++ +++..+.+||+++ |.++|.|.. |.-+......|+.+.+.. ++.... +.--.
T Consensus 89 ~i~vmDvEGTDGrERGEDqdFErksALFaiav--SevvivNMW~~qIG~~Q~aN~~LLKTVfeV~lrLF~~r---k~k~~ 163 (772)
T KOG2203|consen 89 CILVMDVEGTDGRERGEDQDFERKSALFAIAV--SEVVIVNMWEHQIGLYQGANMALLKTVFEVNLRLFSPR---KNKTL 163 (772)
T ss_pred ceEEEecccCCcccccccccHHHHhHHHHHhh--hheehhhHHHHHhhHhhccCcHHHHHHHHHHHHHhCCC---CCceE
Confidence 699999999999887 5666788999886 999999986 455666666777766654 343211 11236
Q ss_pred eEEEEEcCCC
Q psy5032 166 LQFLAVNNNN 175 (193)
Q Consensus 166 l~wlvRD~~~ 175 (193)
|+||+||++-
T Consensus 164 LlFVIRD~~~ 173 (772)
T KOG2203|consen 164 LLFVIRDKTG 173 (772)
T ss_pred EEEEEecccC
Confidence 9999999986
No 6
>KOG2037|consensus
Probab=99.28 E-value=6.6e-13 Score=124.47 Aligned_cols=120 Identities=22% Similarity=0.237 Sum_probs=103.3
Q ss_pred CCCceecCCCCcccceEEEeeccceecCCCCCccEEEEEecccccCccccccchhHHHHHHHhhhceEEEeCcccCChhH
Q psy5032 61 LEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDD 140 (193)
Q Consensus 61 ~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vlllDTEG~~~~~~~~~~d~~if~L~~LLSS~~IyN~~~~i~~~~ 140 (193)
..||++..+..+||+|||||..|. +++..+.++|+||||. ..+...+..||+++-|+|+...||+.+.++...
T Consensus 56 ~~gf~~~s~~~~~~~~~w~w~~p~----~k~~~~~l~Lld~eg~---~~~~~~~~w~~~~~~l~~~~~~~~s~~~~~~~~ 128 (552)
T KOG2037|consen 56 RIGFSVASTDKPVTKGIWMWCVPH----GKSFLLNLVLLDTEGL---KGDNENDDWIFALAPLLSSTWVYGSEGTINGIA 128 (552)
T ss_pred hcCCCcccccccceeeEEEEEeec----CCccchhhhhhccccc---cCCccchhhhhccchhhcceeeccCCcccchhe
Confidence 589999999999999999999996 5777899999999999 445567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhc--------------CCCCCCCceEEEEEcCCCcCCCccccccCCc
Q psy5032 141 LQHLQLFTEYGRLALAD--------------TGTKPFQRLQFLAVNNNNPFRSPVQVQLTGV 188 (193)
Q Consensus 141 l~~L~l~~~~~~~~~~~--------------~~~~~fp~l~wlvRD~~~~~~~~~G~~~t~~ 188 (193)
+.++..++++++..+.. +...+||.|.|-.|||++++.. .|.+|++-
T Consensus 129 ~~~~~~~~~~~e~~k~~~~l~~~~~a~~~~~~~~~~~p~fa~tt~~~slqi~~-~~q~i~ed 189 (552)
T KOG2037|consen 129 MWQLPFVTELTEGIKVASSLMDTQGAFDDQSTFRSCFPDFALTTMDSSLQIYN-DSQNIQED 189 (552)
T ss_pred ecccceeeecCCcceeccccccccccccccccHHHhcchhhceeeeeehhhhc-ccCcCCHH
Confidence 99999999987654311 1246899999999999999864 68999874
No 7
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.59 E-value=3.9e-07 Score=75.76 Aligned_cols=102 Identities=23% Similarity=0.225 Sum_probs=59.7
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEEE
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVIL 98 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vll 98 (193)
|-++|+.++|||++.|.|++ ...|+.+.+..+||...=.....+ +| ..|.+
T Consensus 3 IlllG~tGsGKSs~~N~ilg----------------------~~~f~~~~~~~~~t~~~~~~~~~~-----~g--~~v~V 53 (212)
T PF04548_consen 3 ILLLGKTGSGKSSLGNSILG----------------------KEVFKSGSSAKSVTQECQKYSGEV-----DG--RQVTV 53 (212)
T ss_dssp EEEECSTTSSHHHHHHHHHT----------------------SS-SS--TTTSS--SS-EEEEEEE-----TT--EEEEE
T ss_pred EEEECCCCCCHHHHHHHHhc----------------------ccceeeccccCCcccccceeeeee-----cc--eEEEE
Confidence 45899999999999999998 256777777778887654332211 34 56899
Q ss_pred EecccccCccccccc-hhHHHHHHHhhh----ceEEEeCc-ccCChhHHHHHHHHHHH
Q psy5032 99 LDTQGTFDSESTVRD-CATVFALSTMLS----SIQIYNLS-QNIQEDDLQHLQLFTEY 150 (193)
Q Consensus 99 lDTEG~~~~~~~~~~-d~~if~L~~LLS----S~~IyN~~-~~i~~~~l~~L~l~~~~ 150 (193)
+||||++|...+.+. ...|.- ++.++ +++||=+. +.+++.+...++.+.++
T Consensus 54 IDTPGl~d~~~~~~~~~~~i~~-~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~ 110 (212)
T PF04548_consen 54 IDTPGLFDSDGSDEEIIREIKR-CLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEI 110 (212)
T ss_dssp EE--SSEETTEEHHHHHHHHHH-HHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHH
T ss_pred EeCCCCCCCcccHHHHHHHHHH-HHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHH
Confidence 999999987653222 122222 12222 33444442 37888888888877764
No 8
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.58 E-value=6e-07 Score=73.13 Aligned_cols=102 Identities=21% Similarity=0.178 Sum_probs=58.0
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEEE
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVIL 98 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vll 98 (193)
|.++|..++|||+|+|.|++. ..|..+....++|+..=.....+ .| ..+.+
T Consensus 3 i~lvG~~g~GKSsl~N~ilg~----------------------~~~~~~~~~~~~T~~~~~~~~~~-----~~--~~i~v 53 (196)
T cd01852 3 LVLVGKTGAGKSATGNTILGR----------------------EVFESKLSASSVTKTCQKESAVW-----DG--RRVNV 53 (196)
T ss_pred EEEECCCCCCHHHHHHHhhCC----------------------CccccccCCCCcccccceeeEEE-----CC--eEEEE
Confidence 788999999999999999972 34444433334444332211110 23 35899
Q ss_pred EecccccCccccccc-hhHHHHHHHhhh----ceEEEeC-cccCChhHHHHHHHHHHH
Q psy5032 99 LDTQGTFDSESTVRD-CATVFALSTMLS----SIQIYNL-SQNIQEDDLQHLQLFTEY 150 (193)
Q Consensus 99 lDTEG~~~~~~~~~~-d~~if~L~~LLS----S~~IyN~-~~~i~~~~l~~L~l~~~~ 150 (193)
+||+|+.+...+.+. ...+.. ....+ ..+||=+ .+.+++.+.+.++.+.++
T Consensus 54 iDTPG~~d~~~~~~~~~~~i~~-~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~ 110 (196)
T cd01852 54 IDTPGLFDTSVSPEQLSKEIVR-CLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQEL 110 (196)
T ss_pred EECcCCCCccCChHHHHHHHHH-HHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHH
Confidence 999999987542221 122211 11111 2233322 344788887777766664
No 9
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.46 E-value=2.3e-06 Score=73.38 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=66.3
Q ss_pred HHHHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeec
Q psy5032 3 EYVKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSH 82 (193)
Q Consensus 3 e~~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~ 82 (193)
++...-++....+-.-|.++|..++|||+|+|.|++. ..+.++ ...++|..+=+..-
T Consensus 18 ~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~----------------------~~~~v~-~~~~~T~~~~~~~~ 74 (249)
T cd01853 18 LELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGE----------------------RKAATS-AFQSETLRVREVSG 74 (249)
T ss_pred HHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCC----------------------CCcccC-CCCCceEEEEEEEE
Confidence 4444455556666778999999999999999999982 223222 22345554433221
Q ss_pred cceecCCCCCccEEEEEecccccCccccccchhHHH-HHHHhh-----hceEEEeCcc--cCChhHHHHHHHHHH
Q psy5032 83 VYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVF-ALSTML-----SSIQIYNLSQ--NIQEDDLQHLQLFTE 149 (193)
Q Consensus 83 p~~~~~~~g~~~~vlllDTEG~~~~~~~~~~d~~if-~L~~LL-----SS~~IyN~~~--~i~~~~l~~L~l~~~ 149 (193)
. .+| ..+.++||+|+.+.......+..+. .+...+ .-++..|-.. ..+..+.+.++.+.+
T Consensus 75 ~-----~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e 142 (249)
T cd01853 75 T-----VDG--FKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITD 142 (249)
T ss_pred E-----ECC--eEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 1 133 4589999999997743222222222 222222 2344455333 455666666665555
No 10
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.43 E-value=2.7e-06 Score=63.30 Aligned_cols=61 Identities=23% Similarity=0.129 Sum_probs=40.2
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEEE
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVIL 98 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vll 98 (193)
|.|+|+.++|||+|+|.|++. +...+++ ...+|+-... .++.. ++ ..+.+
T Consensus 2 V~iiG~~~~GKSTlin~l~~~----------------------~~~~~~~-~~~~T~~~~~--~~~~~---~~--~~~~~ 51 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK----------------------KLAKVSN-IPGTTRDPVY--GQFEY---NN--KKFIL 51 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS----------------------TSSEESS-STTSSSSEEE--EEEEE---TT--EEEEE
T ss_pred EEEECCCCCCHHHHHHHHhcc----------------------ccccccc-cccceeeeee--eeeee---ce--eeEEE
Confidence 789999999999999999972 1222332 2456666622 11111 22 34679
Q ss_pred EecccccCccc
Q psy5032 99 LDTQGTFDSES 109 (193)
Q Consensus 99 lDTEG~~~~~~ 109 (193)
+||+|+.+...
T Consensus 52 vDtpG~~~~~~ 62 (116)
T PF01926_consen 52 VDTPGINDGES 62 (116)
T ss_dssp EESSSCSSSSH
T ss_pred EeCCCCcccch
Confidence 99999987654
No 11
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.25 E-value=3e-05 Score=75.03 Aligned_cols=139 Identities=16% Similarity=0.126 Sum_probs=75.9
Q ss_pred CCCCCce---EEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceec
Q psy5032 11 RPSDNDS---KNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIAT 87 (193)
Q Consensus 11 ~~~~~V~---VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~ 87 (193)
....|+. -|.++|+.+.|||+++|.|++. ..|.++ ...++|+.+-.+...
T Consensus 110 ~g~~~LdfslrIvLVGKTGVGKSSLINSILGe----------------------kvf~vs-s~~~~TTr~~ei~~~---- 162 (763)
T TIGR00993 110 EGQDPLDFSLNILVLGKSGVGKSATINSIFGE----------------------VKFSTD-AFGMGTTSVQEIEGL---- 162 (763)
T ss_pred hhccccCcceEEEEECCCCCCHHHHHHHHhcc----------------------cccccc-CCCCCceEEEEEEEE----
Confidence 3444543 5999999999999999999983 345443 234566655222111
Q ss_pred CCCCCccEEEEEecccccCccccccchhHH-HHHHHhhh----ceEEEeCc-c--cCChhHHHHHHHHHHHHHhhhhcCC
Q psy5032 88 LPTGEKAAVILLDTQGTFDSESTVRDCATV-FALSTMLS----SIQIYNLS-Q--NIQEDDLQHLQLFTEYGRLALADTG 159 (193)
Q Consensus 88 ~~~g~~~~vlllDTEG~~~~~~~~~~d~~i-f~L~~LLS----S~~IyN~~-~--~i~~~~l~~L~l~~~~~~~~~~~~~ 159 (193)
.+| ..+.++||+|+.+...+......| -.+...++ .++||=.. . ..+..+...++.+++ .+.+
T Consensus 163 -idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~---lFG~--- 233 (763)
T TIGR00993 163 -VQG--VKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITD---VLGP--- 233 (763)
T ss_pred -ECC--ceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHH---HhCH---
Confidence 134 458999999999876543333333 33333443 35555432 2 222234444444443 3332
Q ss_pred CCCCCceEEEEEcCCCc-CCCccccccC
Q psy5032 160 TKPFQRLQFLAVNNNNP-FRSPVQVQLT 186 (193)
Q Consensus 160 ~~~fp~l~wlvRD~~~~-~~~~~G~~~t 186 (193)
....+.+.|+=-+..- ++.++|.++|
T Consensus 234 -~Iwk~tIVVFThgD~lppdg~ng~~~t 260 (763)
T TIGR00993 234 -SIWFNAIVTLTHAASAPPDGPNGTPLS 260 (763)
T ss_pred -HhHcCEEEEEeCCccCCCCCCCCCCcC
Confidence 2355666666555544 3334555443
No 12
>KOG4181|consensus
Probab=98.13 E-value=1.2e-05 Score=72.46 Aligned_cols=35 Identities=17% Similarity=0.093 Sum_probs=28.2
Q ss_pred HHHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 4 YVKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 4 ~~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.|..++-.. ..+.||+|+|++++|||+|||.|...
T Consensus 177 ~a~~ll~~~-tdf~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 177 NARKLLHKT-TDFTVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred HHHHHhhcC-CCeeEEEeecCCCccHHHHHHHHhcc
Confidence 344444443 68999999999999999999999873
No 13
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.03 E-value=9e-05 Score=59.16 Aligned_cols=111 Identities=15% Similarity=0.139 Sum_probs=62.1
Q ss_pred HHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccc
Q psy5032 5 VKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVY 84 (193)
Q Consensus 5 ~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~ 84 (193)
|..+.+..+....-|.|+|+.++|||+|+|+|.+.- ....+++ ...+|..+=.|..
T Consensus 7 ~~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~---------------------~~~~~~~-~~~~t~~~~~~~~-- 62 (179)
T TIGR03598 7 AVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRK---------------------KLARTSK-TPGRTQLINFFEV-- 62 (179)
T ss_pred eccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCC---------------------CcccccC-CCCcceEEEEEEe--
Confidence 445556666667778999999999999999999720 0011111 2335666544421
Q ss_pred eecCCCCCccEEEEEecccccCccccccchhHHHH-----HHH---hhhceEEEeCcccCChhHHHHHHHH
Q psy5032 85 IATLPTGEKAAVILLDTQGTFDSESTVRDCATVFA-----LST---MLSSIQIYNLSQNIQEDDLQHLQLF 147 (193)
Q Consensus 85 ~~~~~~g~~~~vlllDTEG~~~~~~~~~~d~~if~-----L~~---LLSS~~IyN~~~~i~~~~l~~L~l~ 147 (193)
+ + .+.++||+|+............... +.. +-.-+++++....+.+.+.+.+..+
T Consensus 63 -----~-~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~ 125 (179)
T TIGR03598 63 -----N-D--GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWL 125 (179)
T ss_pred -----C-C--cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHH
Confidence 1 1 3889999998765332211111111 111 0113566776666777766544433
No 14
>PRK00089 era GTPase Era; Reviewed
Probab=98.01 E-value=5e-05 Score=65.45 Aligned_cols=26 Identities=23% Similarity=0.051 Sum_probs=23.2
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+-.+|+|+|+.++|||+|+|.|++.
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~ 28 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQ 28 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999999999973
No 15
>COG1159 Era GTPase [General function prediction only]
Probab=98.01 E-value=1.2e-05 Score=70.78 Aligned_cols=26 Identities=23% Similarity=0.046 Sum_probs=23.9
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+...|+|+|...+|||+|||+|+++
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~ 29 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQ 29 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcC
Confidence 46789999999999999999999985
No 16
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.85 E-value=0.00023 Score=53.81 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=20.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+|+++|+.++|||+|+|.|++
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999997
No 17
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.83 E-value=4.4e-05 Score=60.02 Aligned_cols=22 Identities=18% Similarity=0.001 Sum_probs=20.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..|.++|....|||+|+|.|++
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhc
Confidence 4578999999999999999997
No 18
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.71 E-value=3.7e-05 Score=62.23 Aligned_cols=23 Identities=26% Similarity=0.150 Sum_probs=20.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.++.++|+.+.|||+|+|.|+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46778999999999999999985
No 19
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.70 E-value=0.00065 Score=60.43 Aligned_cols=29 Identities=10% Similarity=-0.030 Sum_probs=25.5
Q ss_pred cCCCCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 10 RRPSDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 10 ~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..+.+-.-|.++|..+.|||.+.|.|++
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG 60 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIG 60 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhC
Confidence 55566777899999999999999999997
No 20
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.69 E-value=0.00016 Score=61.99 Aligned_cols=21 Identities=29% Similarity=0.064 Sum_probs=19.9
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.|+++|+..+|||+|+|.|.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~ 22 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHG 22 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999997
No 21
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.61 E-value=0.00016 Score=56.69 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=21.0
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.-.-+.++|...+|||+|+|.|++
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~ 122 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLN 122 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHc
Confidence 345578999999999999999997
No 22
>PRK12289 GTPase RsgA; Reviewed
Probab=97.61 E-value=0.00013 Score=65.76 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=23.4
Q ss_pred HhcCCCCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 8 THRRPSDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 8 ~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+.+.+.+++ +.++|+.+.|||+|+|.|++.
T Consensus 166 L~~~L~~ki--~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 166 LLEQLRNKI--TVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred Hhhhhccce--EEEEeCCCCCHHHHHHHHcCc
Confidence 344444443 789999999999999999974
No 23
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.58 E-value=0.00034 Score=57.18 Aligned_cols=20 Identities=20% Similarity=0.125 Sum_probs=19.1
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|+|+|+.++|||+|+|.|++
T Consensus 4 I~i~G~~g~GKSSLin~L~g 23 (197)
T cd04104 4 IAVTGESGAGKSSFINALRG 23 (197)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67999999999999999997
No 24
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.51 E-value=0.00047 Score=55.46 Aligned_cols=83 Identities=23% Similarity=0.257 Sum_probs=47.2
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEEE
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVIL 98 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vll 98 (193)
|+++|...+|||+|.|+|.+.-. ...+|.+ ..-....|.+-+. + ..+.+
T Consensus 3 ialvG~PNvGKStLfN~Ltg~~~-------~v~n~pG-------------~Tv~~~~g~~~~~---------~--~~~~l 51 (156)
T PF02421_consen 3 IALVGNPNVGKSTLFNALTGAKQ-------KVGNWPG-------------TTVEKKEGIFKLG---------D--QQVEL 51 (156)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSE-------EEEESTT-------------SSSEEEEEEEEET---------T--EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHCCCc-------eecCCCC-------------CCeeeeeEEEEec---------C--ceEEE
Confidence 78999999999999999998421 1122332 3344567777541 2 45999
Q ss_pred EecccccCccccccchhHHHHHHHhhhc--eEEEeCcc
Q psy5032 99 LDTQGTFDSESTVRDCATVFALSTMLSS--IQIYNLSQ 134 (193)
Q Consensus 99 lDTEG~~~~~~~~~~d~~if~L~~LLSS--~~IyN~~~ 134 (193)
+|++|..+... ...+.++.. ..+++. -.|.|+..
T Consensus 52 vDlPG~ysl~~-~s~ee~v~~-~~l~~~~~D~ii~VvD 87 (156)
T PF02421_consen 52 VDLPGIYSLSS-KSEEERVAR-DYLLSEKPDLIIVVVD 87 (156)
T ss_dssp EE----SSSSS-SSHHHHHHH-HHHHHTSSSEEEEEEE
T ss_pred EECCCcccCCC-CCcHHHHHH-HHHhhcCCCEEEEECC
Confidence 99999988654 223344433 223332 25556543
No 25
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.47 E-value=0.0013 Score=53.29 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=24.1
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+.++..|.|+|+.++|||+|+|.|.+
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~ 63 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTG 63 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhc
Confidence 56788999999999999999999997
No 26
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.45 E-value=0.00047 Score=53.26 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=42.0
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEEE
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVIL 98 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vll 98 (193)
|.|+|+.++|||+|+|+|... ...|. .....|.|...+...+.. .+++.+.+.+
T Consensus 3 i~vvG~~~~GKtsl~~~l~~~---------------------~~~~~---~~~~~t~~~~~~~~~~~~--~~~~~~~l~i 56 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSN---------------------GAVFP---KNYLMTTGCDFVVKEVPV--DTDNTVELFI 56 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC---------------------CCCcC---ccCCCceEEEEEEEEEEe--CCCCEEEEEE
Confidence 789999999999999999851 01221 234567777766554422 2566688999
Q ss_pred Eecccc
Q psy5032 99 LDTQGT 104 (193)
Q Consensus 99 lDTEG~ 104 (193)
.||.|.
T Consensus 57 ~Dt~G~ 62 (164)
T cd04101 57 FDSAGQ 62 (164)
T ss_pred EECCCH
Confidence 999984
No 27
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.42 E-value=0.00014 Score=56.92 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=19.7
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|+|+|.+++|||+|+|.|++.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~ 21 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGR 21 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTS
T ss_pred CEEEcCCCCCHHHHHHHHHhc
Confidence 789999999999999999984
No 28
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.41 E-value=0.00079 Score=49.94 Aligned_cols=19 Identities=37% Similarity=0.244 Sum_probs=17.4
Q ss_pred eeCCCCCChHHHHHHHHhh
Q psy5032 21 EKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 21 V~G~~rtGKSfLLN~Ll~~ 39 (193)
|+|+.++|||+|+|.|.+.
T Consensus 1 i~G~~gsGKstl~~~l~~~ 19 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQ 19 (163)
T ss_pred CcCCCCCCHHHHHHHHhCc
Confidence 6899999999999999974
No 29
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.40 E-value=0.0012 Score=49.99 Aligned_cols=19 Identities=26% Similarity=0.139 Sum_probs=17.6
Q ss_pred EeeCCCCCChHHHHHHHHh
Q psy5032 20 SEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 20 SV~G~~rtGKSfLLN~Ll~ 38 (193)
+++|..++|||+|+|+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~ 19 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTG 19 (157)
T ss_pred CccCCCCCCHHHHHHHHhC
Confidence 4789999999999999997
No 30
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.40 E-value=0.003 Score=47.86 Aligned_cols=20 Identities=25% Similarity=0.144 Sum_probs=18.6
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||+|+|.|.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 68999999999999999994
No 31
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.40 E-value=0.00047 Score=59.88 Aligned_cols=72 Identities=19% Similarity=0.106 Sum_probs=43.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEE
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVI 97 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vl 97 (193)
-|.|+|+.++|||+|+|.|++.-.. ...... .. .+.....|.++-.....+ . .+|..+.+.
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~------------~~~~~~-~~---~~~~~~~T~~i~~~~~~i--~-~~g~~~~l~ 66 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLI------------PSDYPP-DP---AEEHIDKTVEIKSSKAEI--E-ENGVKLKLT 66 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCc------------cccCCC-Cc---cccccCCceEEEEEEEEE--E-ECCEEEEEE
Confidence 4789999999999999999973110 000000 00 001234566665544332 1 245667899
Q ss_pred EEecccccCcc
Q psy5032 98 LLDTQGTFDSE 108 (193)
Q Consensus 98 llDTEG~~~~~ 108 (193)
++||+|+++.-
T Consensus 67 iiDTpGfgd~~ 77 (276)
T cd01850 67 VIDTPGFGDNI 77 (276)
T ss_pred EEecCCccccc
Confidence 99999998764
No 32
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.39 E-value=0.00055 Score=55.52 Aligned_cols=23 Identities=26% Similarity=0.122 Sum_probs=21.0
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
...|.++|...+|||+|+|.|.+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~ 139 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKR 139 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhC
Confidence 35688999999999999999997
No 33
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.38 E-value=0.00088 Score=58.25 Aligned_cols=63 Identities=21% Similarity=0.125 Sum_probs=41.3
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCc
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEK 93 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~ 93 (193)
.+...|.++|...+|||+|+|.|.+.- ...+++ .-..|+++ -|.. .+.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~----------------------~~~~~~-~~g~T~~~-~~~~-------~~~- 166 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKK----------------------IAKTGN-RPGVTKAQ-QWIK-------LGK- 166 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCC----------------------ccccCC-CCCeEEEE-EEEE-------eCC-
Confidence 345678999999999999999999731 112221 12256664 2211 122
Q ss_pred cEEEEEecccccCccc
Q psy5032 94 AAVILLDTQGTFDSES 109 (193)
Q Consensus 94 ~~vlllDTEG~~~~~~ 109 (193)
.+.|+||+|+..+..
T Consensus 167 -~~~l~DtPGi~~~~~ 181 (287)
T PRK09563 167 -GLELLDTPGILWPKL 181 (287)
T ss_pred -cEEEEECCCcCCCCC
Confidence 388999999987754
No 34
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.33 E-value=0.002 Score=50.49 Aligned_cols=21 Identities=38% Similarity=0.294 Sum_probs=19.6
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|+++|...+|||+|+|+|++.
T Consensus 3 i~~vG~~~~GKssL~~~l~~~ 23 (179)
T cd01890 3 FSIIAHIDHGKSTLADRLLEL 23 (179)
T ss_pred EEEEeecCCCHHHHHHHHHHH
Confidence 789999999999999999974
No 35
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.31 E-value=0.00071 Score=50.22 Aligned_cols=20 Identities=35% Similarity=0.177 Sum_probs=19.0
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|..++|||+|+|+|+.
T Consensus 4 i~~~G~~~~GKstl~~~l~~ 23 (161)
T TIGR00231 4 IVIVGDPNVGKSTLLNRLLG 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999997
No 36
>PRK12288 GTPase RsgA; Reviewed
Probab=97.31 E-value=0.00032 Score=63.03 Aligned_cols=21 Identities=29% Similarity=0.137 Sum_probs=19.3
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+.++|+.+.|||+|+|.|++.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred EEEECCCCCCHHHHHHHhccc
Confidence 568999999999999999974
No 37
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.30 E-value=0.002 Score=49.92 Aligned_cols=21 Identities=29% Similarity=0.118 Sum_probs=19.4
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.|.++|...+|||+|+|+|.+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~ 22 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTR 22 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhc
Confidence 478999999999999999997
No 38
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.28 E-value=0.0022 Score=49.68 Aligned_cols=20 Identities=25% Similarity=0.102 Sum_probs=19.0
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|+++|...+|||+|+|.|.+
T Consensus 3 v~ivG~~~~GKStl~~~l~~ 22 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISN 22 (170)
T ss_pred eEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999986
No 39
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.26 E-value=0.0065 Score=48.37 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.1
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
....+.-|+|+|..++|||+|+|.|++
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~ 46 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTN 46 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 344566699999999999999999997
No 40
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.23 E-value=0.0011 Score=51.33 Aligned_cols=21 Identities=24% Similarity=0.112 Sum_probs=19.2
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+.++|..+.|||+|+|.|++
T Consensus 85 ~~~~~G~~~vGKstlin~l~~ 105 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVG 105 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 467889999999999999997
No 41
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.23 E-value=0.0031 Score=51.67 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=18.7
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|..++|||.|+|++.+
T Consensus 3 I~ivG~~~vGKTsLi~~~~~ 22 (198)
T cd04142 3 VAVLGAPGVGKTAIVRQFLA 22 (198)
T ss_pred EEEECCCCCcHHHHHHHHHc
Confidence 68999999999999999986
No 42
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.21 E-value=0.00061 Score=54.95 Aligned_cols=27 Identities=26% Similarity=0.165 Sum_probs=24.6
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++..|+|+|+..+|||+|++.|+...
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~ 27 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKA 27 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhc
Confidence 468899999999999999999999864
No 43
>KOG1423|consensus
Probab=97.21 E-value=0.00061 Score=60.79 Aligned_cols=68 Identities=18% Similarity=0.127 Sum_probs=47.2
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCC
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGE 92 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~ 92 (193)
++++-=|+|+|+...|||+|-|++.+. ..|.++..+...|.-|--- + +..
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~----------------------kv~~vS~K~~TTr~~ilgi----~----ts~ 118 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQ----------------------KVSAVSRKVHTTRHRILGI----I----TSG 118 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCC----------------------ccccccccccceeeeeeEE----E----ecC
Confidence 456777999999999999999999984 4555554444444333110 1 223
Q ss_pred ccEEEEEecccccCcccc
Q psy5032 93 KAAVILLDTQGTFDSEST 110 (193)
Q Consensus 93 ~~~vlllDTEG~~~~~~~ 110 (193)
+.-++|.||+|+.....-
T Consensus 119 eTQlvf~DTPGlvs~~~~ 136 (379)
T KOG1423|consen 119 ETQLVFYDTPGLVSKKMH 136 (379)
T ss_pred ceEEEEecCCcccccchh
Confidence 457999999999887653
No 44
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.20 E-value=0.00074 Score=57.60 Aligned_cols=22 Identities=23% Similarity=0.022 Sum_probs=20.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+.++|+.+.|||+|+|.|++.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 5679999999999999999984
No 45
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.18 E-value=0.0053 Score=47.04 Aligned_cols=20 Identities=10% Similarity=-0.006 Sum_probs=18.9
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||+|+|+|++
T Consensus 3 i~liG~~~~GKSsli~~l~~ 22 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMY 22 (161)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999996
No 46
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.16 E-value=0.00083 Score=62.29 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=25.3
Q ss_pred hcCCCCCceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 9 HRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 9 ~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-++-++.+. |+|+||-|||||+|+|+|.+.+
T Consensus 11 a~RT~G~Iy-IGvvGpvrtGKSTfIn~fm~q~ 41 (492)
T TIGR02836 11 AERTQGDIY-IGVVGPVRTGKSTFIKKFMELL 41 (492)
T ss_pred HHHhCCcEE-EEEEcCCCCChHHHHHHHHhhh
Confidence 344455665 8999999999999999999973
No 47
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.14 E-value=0.0062 Score=45.91 Aligned_cols=21 Identities=33% Similarity=0.150 Sum_probs=19.4
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-|.++|+..+|||+|+|.|.+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~ 23 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAG 23 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 378999999999999999996
No 48
>PRK15494 era GTPase Era; Provisional
Probab=97.11 E-value=0.0052 Score=54.83 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=22.4
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+..-|+++|...+|||+|+|.|++
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~ 74 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIG 74 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhC
Confidence 4556799999999999999999997
No 49
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.10 E-value=0.00082 Score=58.97 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=20.3
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+||. |=++|+.+.|||.|+|.||.
T Consensus 38 ~pvn-vLi~G~TG~GKSSliNALF~ 61 (296)
T COG3596 38 EPVN-VLLMGATGAGKSSLINALFQ 61 (296)
T ss_pred Ccee-EEEecCCCCcHHHHHHHHHh
Confidence 4554 44899999999999999996
No 50
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.09 E-value=0.002 Score=49.48 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=38.4
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEEE
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVIL 98 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vll 98 (193)
|.++|..++|||+|+|++.+. .|. .....|.|...-...+.+. +.+..+.+.+
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~-----------------------~~~---~~~~~t~~~~~~~~~~~~~-~~~~~~~~~i 55 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG-----------------------IFT---KDYKKTIGVDFLEKQIFLR-QSDEDVRLML 55 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC-----------------------CCC---CCCCCcEEEEEEEEEEEEc-CCCCEEEEEE
Confidence 789999999999999999862 121 1123455554332333222 1345578999
Q ss_pred Eeccccc
Q psy5032 99 LDTQGTF 105 (193)
Q Consensus 99 lDTEG~~ 105 (193)
.||+|..
T Consensus 56 ~D~~G~~ 62 (162)
T cd04106 56 WDTAGQE 62 (162)
T ss_pred eeCCchH
Confidence 9999943
No 51
>PRK00098 GTPase RsgA; Reviewed
Probab=97.05 E-value=0.0014 Score=57.50 Aligned_cols=22 Identities=27% Similarity=0.095 Sum_probs=19.9
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
++.++|+.+.|||+|+|.|++.
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999974
No 52
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.03 E-value=0.00082 Score=56.32 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=20.6
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+|+|+||.++|||+|||.+.++
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhc
Confidence 6899999999999999999985
No 53
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.03 E-value=0.002 Score=49.62 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=18.8
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|+.++|||+|+|+|++
T Consensus 3 i~v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999999996
No 54
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.02 E-value=0.012 Score=44.94 Aligned_cols=21 Identities=29% Similarity=0.203 Sum_probs=19.5
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-|.++|..++|||+|+|.|++
T Consensus 4 ~i~i~G~~~~GKstli~~l~~ 24 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALLG 24 (174)
T ss_pred EEEEEcCCCCCHHHHHHHHhC
Confidence 478999999999999999997
No 55
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.99 E-value=0.003 Score=55.04 Aligned_cols=23 Identities=26% Similarity=0.163 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
..+.++|+.+.|||+|+|.|++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhch
Confidence 46889999999999999999985
No 56
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.97 E-value=0.0025 Score=49.51 Aligned_cols=22 Identities=14% Similarity=-0.023 Sum_probs=19.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.=|.|+|+.++|||+|+|++..
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 4478899999999999999875
No 57
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=96.96 E-value=0.0019 Score=49.36 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=20.0
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+|+|+|...+|||+|+|.|.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 799999999999999999986
No 58
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.95 E-value=0.003 Score=48.38 Aligned_cols=58 Identities=17% Similarity=0.063 Sum_probs=37.3
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEEE
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVIL 98 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vll 98 (193)
|.++|+.++|||+|+|+|.+. .|. .....|.|+-.....+.. ++..+.+-+
T Consensus 3 i~~vG~~~vGKTsli~~l~~~-----------------------~~~---~~~~~t~~~~~~~~~~~~---~~~~~~l~i 53 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG-----------------------RFV---SKYLPTIGIDYGVKKVSV---RNKEVRVNF 53 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC-----------------------CCC---CCCCCccceeEEEEEEEE---CCeEEEEEE
Confidence 679999999999999999972 111 112234444332222221 355678889
Q ss_pred Eeccccc
Q psy5032 99 LDTQGTF 105 (193)
Q Consensus 99 lDTEG~~ 105 (193)
+||.|..
T Consensus 54 ~Dt~G~~ 60 (168)
T cd04119 54 FDLSGHP 60 (168)
T ss_pred EECCccH
Confidence 9999964
No 59
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=96.94 E-value=0.002 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=19.8
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+|.|+|..++|||+|+|.|.+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~ 22 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRK 22 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHh
Confidence 589999999999999999996
No 60
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=96.93 E-value=0.0028 Score=49.01 Aligned_cols=21 Identities=33% Similarity=0.140 Sum_probs=19.4
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
=|.|+|+.++|||+|+|+|.+
T Consensus 5 ki~vvG~~~~GKSsli~~l~~ 25 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTR 25 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999996
No 61
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.93 E-value=0.0068 Score=47.36 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=19.5
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|+|+|...+|||+|+|.|.+.
T Consensus 2 v~v~G~~~~GKStlln~l~~~ 22 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYV 22 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHh
Confidence 789999999999999999984
No 62
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.002 Score=55.57 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+|||+||.+.|||+|||.+.+.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
No 63
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.91 E-value=0.0029 Score=47.40 Aligned_cols=20 Identities=20% Similarity=-0.019 Sum_probs=18.8
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||+|+|.|.+
T Consensus 3 i~~~G~~~~GKStl~~~l~~ 22 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVD 22 (159)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67899999999999999986
No 64
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.89 E-value=0.0056 Score=54.87 Aligned_cols=110 Identities=18% Similarity=0.169 Sum_probs=68.8
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCC
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTG 91 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g 91 (193)
++-..-=|-|+|....|||+|++.+-+.-. +-+.=-| .||||.+-.- +.
T Consensus 164 Idp~~pTivVaG~PNVGKSSlv~~lT~Akp----------------EvA~YPF--------TTK~i~vGhf-------e~ 212 (346)
T COG1084 164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAKP----------------EVAPYPF--------TTKGIHVGHF-------ER 212 (346)
T ss_pred CCCCCCeEEEecCCCCcHHHHHHHHhcCCC----------------ccCCCCc--------cccceeEeee-------ec
Confidence 444566677899999999999999997311 0011122 7899987632 22
Q ss_pred CccEEEEEecccccCccc---cccchhHHHHHHHhhhceEEEeCc--ccCChhHHHHHHHHHHHHHh
Q psy5032 92 EKAAVILLDTQGTFDSES---TVRDCATVFALSTMLSSIQIYNLS--QNIQEDDLQHLQLFTEYGRL 153 (193)
Q Consensus 92 ~~~~vlllDTEG~~~~~~---~~~~d~~if~L~~LLSS~~IyN~~--~~i~~~~l~~L~l~~~~~~~ 153 (193)
....+=++||+|+.|... +.=+...|.||.- |-++++|=.. ...--.-=+|.+|+.+...+
T Consensus 213 ~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h-l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~ 278 (346)
T COG1084 213 GYLRIQVIDTPGLLDRPLEERNEIERQAILALRH-LAGVILFLFDPSETCGYSLEEQISLLEEIKEL 278 (346)
T ss_pred CCceEEEecCCcccCCChHHhcHHHHHHHHHHHH-hcCeEEEEEcCccccCCCHHHHHHHHHHHHHh
Confidence 335688999999999654 4445667777765 4556566543 22222333556666665433
No 65
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.88 E-value=0.014 Score=53.04 Aligned_cols=24 Identities=29% Similarity=0.177 Sum_probs=21.7
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|+|+|...+|||+|+|.|++
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~ 195 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLG 195 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhC
Confidence 446799999999999999999997
No 66
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=96.86 E-value=0.0026 Score=55.61 Aligned_cols=72 Identities=14% Similarity=0.037 Sum_probs=38.0
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEEE
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVIL 98 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vll 98 (193)
|=|+|+.++|||+|+|.|++..... . ...... ...+..+..=+-.....+. .++..+.+-+
T Consensus 7 ImVvG~sG~GKTTFIntL~~~~~~~-----------~-----~~~~~~--~~~~~~~~~~i~~~~~~l~-e~~~~l~Lti 67 (281)
T PF00735_consen 7 IMVVGESGLGKTTFINTLFNSDIIS-----------E-----DSSIPP--PSASISRTLEIEERTVELE-ENGVKLNLTI 67 (281)
T ss_dssp EEEEECTTSSHHHHHHHHHTSS-------------------------S--------SCEEEEEEEEEEE-ETCEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhccccc-----------c-----cccccc--cccccccccceeeEEEEec-cCCcceEEEE
Confidence 4589999999999999999842210 0 000100 1112222222223333232 2566678999
Q ss_pred EecccccCccc
Q psy5032 99 LDTQGTFDSES 109 (193)
Q Consensus 99 lDTEG~~~~~~ 109 (193)
+||+|+++.-.
T Consensus 68 iDTpGfGd~i~ 78 (281)
T PF00735_consen 68 IDTPGFGDNID 78 (281)
T ss_dssp EEEC-CSSSST
T ss_pred EeCCCcccccc
Confidence 99999997543
No 67
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=96.86 E-value=0.0013 Score=47.99 Aligned_cols=19 Identities=32% Similarity=0.169 Sum_probs=17.5
Q ss_pred eeCCCCCChHHHHHHHHhh
Q psy5032 21 EKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 21 V~G~~rtGKSfLLN~Ll~~ 39 (193)
|+|+.++|||+|+|.|.+.
T Consensus 1 iiG~~~~GKStl~~~l~~~ 19 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGG 19 (157)
T ss_pred CCCcCCCcHHHHHHHHHhC
Confidence 6899999999999999973
No 68
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=96.86 E-value=0.0046 Score=47.43 Aligned_cols=21 Identities=24% Similarity=0.017 Sum_probs=19.4
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
=|.++|+.++|||+|+|++++
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~ 24 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQ 24 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 478999999999999999986
No 69
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.86 E-value=0.0037 Score=48.44 Aligned_cols=18 Identities=33% Similarity=0.191 Sum_probs=17.0
Q ss_pred eeCCCCCChHHHHHHHHh
Q psy5032 21 EKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 21 V~G~~rtGKSfLLN~Ll~ 38 (193)
++|+.++|||+|+|.|.+
T Consensus 1 iiG~~~~GKStll~~l~~ 18 (176)
T cd01881 1 LVGLPNVGKSTLLNALTN 18 (176)
T ss_pred CCCCCCCcHHHHHHHHhc
Confidence 589999999999999997
No 70
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=96.84 E-value=0.0035 Score=49.07 Aligned_cols=23 Identities=26% Similarity=-0.047 Sum_probs=20.7
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+.=|.|+|+.++|||.|+|++.+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~ 26 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTD 26 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 45589999999999999999986
No 71
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=96.84 E-value=0.006 Score=55.67 Aligned_cols=24 Identities=13% Similarity=-0.065 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
++=|+++|...+|||+|||.|.+.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~ 182 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAA 182 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCC
Confidence 556999999999999999999973
No 72
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.83 E-value=0.0068 Score=52.35 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=21.7
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+...|.|+|...+|||+|+|.|.+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~ 140 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAG 140 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 456699999999999999999997
No 73
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=96.83 E-value=0.0038 Score=48.65 Aligned_cols=58 Identities=17% Similarity=0.087 Sum_probs=37.7
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEEE
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVIL 98 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vll 98 (193)
|.++|+.++|||+|+|+|.+. .|. ..-..|.|+-....-+. .+++.+.+.+
T Consensus 4 i~i~G~~~~GKSsli~~l~~~-----------------------~~~---~~~~~t~~~~~~~~~~~---~~~~~~~~~l 54 (165)
T cd01865 4 LLIIGNSSVGKTSFLFRYADD-----------------------SFT---SAFVSTVGIDFKVKTVF---RNDKRVKLQI 54 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcC-----------------------CCC---CCCCCceeeEEEEEEEE---ECCEEEEEEE
Confidence 789999999999999999862 221 11223555533322221 2455678999
Q ss_pred Eeccccc
Q psy5032 99 LDTQGTF 105 (193)
Q Consensus 99 lDTEG~~ 105 (193)
.||.|..
T Consensus 55 ~Dt~g~~ 61 (165)
T cd01865 55 WDTAGQE 61 (165)
T ss_pred EECCChH
Confidence 9999854
No 74
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.82 E-value=0.0033 Score=48.94 Aligned_cols=20 Identities=25% Similarity=0.066 Sum_probs=18.5
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|..++|||+|++++..
T Consensus 3 i~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67899999999999999986
No 75
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.81 E-value=0.0036 Score=48.05 Aligned_cols=20 Identities=20% Similarity=0.016 Sum_probs=19.0
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|+.++|||.|+|++++
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVK 23 (163)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999997
No 76
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.80 E-value=0.0034 Score=47.95 Aligned_cols=20 Identities=25% Similarity=-0.062 Sum_probs=18.9
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||+|+|++..
T Consensus 3 i~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999996
No 77
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=96.79 E-value=0.004 Score=48.45 Aligned_cols=20 Identities=25% Similarity=0.154 Sum_probs=18.5
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||.|+|++..
T Consensus 5 i~iiG~~~vGKTsli~~~~~ 24 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTE 24 (166)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67899999999999999986
No 78
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.77 E-value=0.014 Score=45.08 Aligned_cols=20 Identities=20% Similarity=0.042 Sum_probs=18.6
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||+|+|+|.+
T Consensus 2 i~~vG~~~~GKstLi~~l~~ 21 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKT 21 (167)
T ss_pred EEEEecCCCCHHHHHHHHhh
Confidence 67899999999999999986
No 79
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=96.76 E-value=0.0062 Score=47.76 Aligned_cols=23 Identities=17% Similarity=-0.128 Sum_probs=20.6
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+.-|.++|+.++|||.|+|+++.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~ 24 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA 24 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35589999999999999999986
No 80
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.75 E-value=0.0033 Score=47.21 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=18.9
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|+++|+.++|||+|+|+|.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~ 21 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAG 21 (159)
T ss_pred EEEEcCCCCCHHHHHHHHcc
Confidence 68999999999999999987
No 81
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.75 E-value=0.0028 Score=51.10 Aligned_cols=22 Identities=32% Similarity=0.261 Sum_probs=20.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+.++|....|||+|+|.|++.
T Consensus 129 ~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 129 DVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred cEEEEcCCCCCHHHHHHHHHHh
Confidence 5779999999999999999984
No 82
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=96.74 E-value=0.0038 Score=47.85 Aligned_cols=21 Identities=24% Similarity=0.031 Sum_probs=19.1
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-|.|+|+.++|||+|+|++..
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999996
No 83
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=96.74 E-value=0.0085 Score=54.62 Aligned_cols=107 Identities=15% Similarity=0.046 Sum_probs=54.6
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCc
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEK 93 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~ 93 (193)
.|+. |+|+|..++|||+|.|.|.+.-.. .++.+.. |+-..|.-.--+..| .-+.
T Consensus 34 ~~l~-IaV~G~sGsGKSSfINalrGl~~~-------------d~~aA~t------Gv~etT~~~~~Y~~p------~~pn 87 (376)
T PF05049_consen 34 APLN-IAVTGESGSGKSSFINALRGLGHE-------------DEGAAPT------GVVETTMEPTPYPHP------KFPN 87 (376)
T ss_dssp --EE-EEEEESTTSSHHHHHHHHTT--TT-------------STTS--S------SSHSCCTS-EEEE-S------S-TT
T ss_pred CceE-EEEECCCCCCHHHHHHHHhCCCCC-------------CcCcCCC------CCCcCCCCCeeCCCC------CCCC
Confidence 3554 899999999999999999873100 0001111 233455555444444 3333
Q ss_pred cEEEEEecccccCccccccchhHHHHHHHhhhceEEEeCcccCChhHHHHHHHHHHH
Q psy5032 94 AAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEY 150 (193)
Q Consensus 94 ~~vlllDTEG~~~~~~~~~~d~~if~L~~LLSS~~IyN~~~~i~~~~l~~L~l~~~~ 150 (193)
|.|-|.||.+......+ .-+=..-.---..+|.=+.....+++++-.+-+.+.
T Consensus 88 --v~lWDlPG~gt~~f~~~--~Yl~~~~~~~yD~fiii~s~rf~~ndv~La~~i~~~ 140 (376)
T PF05049_consen 88 --VTLWDLPGIGTPNFPPE--EYLKEVKFYRYDFFIIISSERFTENDVQLAKEIQRM 140 (376)
T ss_dssp --EEEEEE--GGGSS--HH--HHHHHTTGGG-SEEEEEESSS--HHHHHHHHHHHHT
T ss_pred --CeEEeCCCCCCCCCCHH--HHHHHccccccCEEEEEeCCCCchhhHHHHHHHHHc
Confidence 88889999987654211 111111111235677766778888888766655553
No 84
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.74 E-value=0.0039 Score=48.06 Aligned_cols=20 Identities=20% Similarity=-0.049 Sum_probs=18.9
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|+.++|||+|+|++.+
T Consensus 3 i~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999996
No 85
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.72 E-value=0.0052 Score=46.70 Aligned_cols=20 Identities=20% Similarity=-0.007 Sum_probs=19.0
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|+.++|||+|+|.|++
T Consensus 3 i~i~G~~~~GKStli~~l~~ 22 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVE 22 (162)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999996
No 86
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.71 E-value=0.0045 Score=47.88 Aligned_cols=21 Identities=14% Similarity=0.014 Sum_probs=19.4
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|.|+|+.++|||+|+|.+.+.
T Consensus 3 i~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999973
No 87
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.70 E-value=0.0057 Score=46.78 Aligned_cols=20 Identities=25% Similarity=0.003 Sum_probs=18.9
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|+..+|||+|+|+|.+
T Consensus 3 v~v~G~~~~GKTtli~~l~~ 22 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTD 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999996
No 88
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.69 E-value=0.022 Score=51.73 Aligned_cols=21 Identities=24% Similarity=0.064 Sum_probs=19.7
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.|+|+|..++|||+|+|.|.+
T Consensus 3 ~I~ivG~~~vGKStL~n~l~~ 23 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTG 23 (435)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999997
No 89
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.68 E-value=0.025 Score=51.22 Aligned_cols=24 Identities=29% Similarity=0.164 Sum_probs=21.3
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|+|+|....|||+|+|.|++
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~ 194 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLG 194 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHC
Confidence 345689999999999999999997
No 90
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=96.65 E-value=0.0057 Score=50.34 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=39.1
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEEE
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVIL 98 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vll 98 (193)
|.++|..++|||+|+|+|.+. .|. .....|.|+-.+...+.+ +++..+.+.+
T Consensus 3 i~ivG~~~vGKSsLi~~l~~~-----------------------~~~---~~~~~T~~~d~~~~~i~~--~~~~~~~~~i 54 (215)
T cd04109 3 IVVLGDGAVGKTSLCRRFAKE-----------------------GFG---KSYKQTIGLDFFSKRVTL--PGNLNVTLQV 54 (215)
T ss_pred EEEECcCCCCHHHHHHHHhcC-----------------------CCC---CCCCCceeEEEEEEEEEe--CCCCEEEEEE
Confidence 679999999999999999862 221 122356676555443322 3344577889
Q ss_pred Eecccc
Q psy5032 99 LDTQGT 104 (193)
Q Consensus 99 lDTEG~ 104 (193)
.||.|.
T Consensus 55 ~Dt~G~ 60 (215)
T cd04109 55 WDIGGQ 60 (215)
T ss_pred EECCCc
Confidence 999984
No 91
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.65 E-value=0.0058 Score=46.46 Aligned_cols=20 Identities=30% Similarity=0.029 Sum_probs=18.8
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||+|+|++.+
T Consensus 4 i~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67899999999999999996
No 92
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.64 E-value=0.0057 Score=47.74 Aligned_cols=22 Identities=27% Similarity=-0.038 Sum_probs=19.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.=|.++|+.++|||.|+|++.+
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~ 25 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSE 25 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 3478999999999999999986
No 93
>PRK11058 GTPase HflX; Provisional
Probab=96.62 E-value=0.019 Score=53.00 Aligned_cols=23 Identities=22% Similarity=0.085 Sum_probs=20.8
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+-.|+++|...+|||+|+|.|.+
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~ 219 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITE 219 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44689999999999999999987
No 94
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=96.62 E-value=0.007 Score=47.58 Aligned_cols=59 Identities=17% Similarity=0.059 Sum_probs=38.1
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEEE
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVIL 98 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vll 98 (193)
|.|+|+.++|||+|+|+++.. .|.. ....|.|+-+-...+ . .+++.+.+.+
T Consensus 3 i~vvG~~~vGKTsli~~~~~~-----------------------~~~~---~~~~t~~~~~~~~~~--~-~~~~~~~l~i 53 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTG-----------------------EFEK---KYVATLGVEVHPLDF--H-TNRGKIRFNV 53 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhC-----------------------CCCC---CCCCceeeEEEEEEE--E-ECCEEEEEEE
Confidence 789999999999999999852 1211 122455544322211 1 1455688999
Q ss_pred EecccccC
Q psy5032 99 LDTQGTFD 106 (193)
Q Consensus 99 lDTEG~~~ 106 (193)
.||.|...
T Consensus 54 ~Dt~G~~~ 61 (166)
T cd00877 54 WDTAGQEK 61 (166)
T ss_pred EECCCChh
Confidence 99999653
No 95
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.62 E-value=0.022 Score=51.49 Aligned_cols=21 Identities=24% Similarity=0.064 Sum_probs=19.6
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.|+|+|....|||+|+|.|.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~ 21 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTG 21 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999999997
No 96
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=96.62 E-value=0.0096 Score=46.72 Aligned_cols=23 Identities=17% Similarity=-0.110 Sum_probs=20.1
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..-|.++|+.++|||+|+|++..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~ 26 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTD 26 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34467999999999999999986
No 97
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.62 E-value=0.0062 Score=47.18 Aligned_cols=21 Identities=29% Similarity=0.007 Sum_probs=19.1
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
=|.|+|+.++|||.|+|++.+
T Consensus 4 ki~i~G~~~vGKSsli~~~~~ 24 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFAD 24 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378899999999999999986
No 98
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=96.61 E-value=0.0069 Score=46.74 Aligned_cols=20 Identities=20% Similarity=-0.071 Sum_probs=18.7
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||+|+|+|.+
T Consensus 3 i~i~G~~~~GKSsli~~l~~ 22 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTT 22 (171)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999999997
No 99
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=96.60 E-value=0.0071 Score=47.04 Aligned_cols=22 Identities=23% Similarity=0.018 Sum_probs=19.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.=|.|+|+.++|||+|+|++.+
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~ 27 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVT 27 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4478899999999999999986
No 100
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.60 E-value=0.0016 Score=55.43 Aligned_cols=21 Identities=29% Similarity=0.142 Sum_probs=19.9
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+|+|+||.+||||+|||.+-+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999999986
No 101
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.59 E-value=0.0057 Score=49.22 Aligned_cols=20 Identities=20% Similarity=-0.029 Sum_probs=18.6
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|+.++|||+|+|++..
T Consensus 3 i~vvG~~~vGKTSli~~~~~ 22 (191)
T cd04112 3 VMLLGDSGVGKTCLLVRFKD 22 (191)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67899999999999999986
No 102
>PTZ00258 GTP-binding protein; Provisional
Probab=96.56 E-value=0.0059 Score=55.91 Aligned_cols=37 Identities=32% Similarity=0.247 Sum_probs=29.2
Q ss_pred CcHHHHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 1 MAEYVKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 1 ~~e~~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
|+..+..++++....+ -|+|+|...+|||+|+|.|.+
T Consensus 7 ~~~~~~~~~~~~~~~~-kvgIVG~PNvGKSTLfnaLt~ 43 (390)
T PTZ00258 7 MEEEKKVLLGRPGNNL-KMGIVGLPNVGKSTTFNALCK 43 (390)
T ss_pred hccccchhhccCCCCc-EEEEECCCCCChHHHHHHHhc
Confidence 4555666677665544 599999999999999999976
No 103
>PF10220 DUF2146: Uncharacterized conserved protein (DUF2146); InterPro: IPR019354 Smg8 and Smg9 are two subunits of the Smg-1 complex. They suppress Smg-1 kinase activity in the isolated Smg-1 complex, and are involved in nonsense-mediated mRNA decay (NMD) in both mammals and nematodes []. NMD is a surveillance mechanism that detects and degrades mRNAs containing premature translation termination codons.
Probab=96.55 E-value=0.054 Score=54.38 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=46.5
Q ss_pred cCCCCCceEEEeeCCCC--CChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCC---CcccceEEEeeccc
Q psy5032 10 RRPSDNDSKNSEKSAFR--KGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGS---ERDTTGILMWSHVY 84 (193)
Q Consensus 10 ~~~~~~V~VVSV~G~~r--tGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~---~~~T~GIwmw~~p~ 84 (193)
-..++.|+||+|+|..+ .||+.++|.+++. +.|+..... ...|-+|-.|-.
T Consensus 5 ~~~d~~vvVVGViGKS~~~~~k~~~iN~~~~~----------------------nvF~~~~~~~~~~~~~~~Ie~Yy~-- 60 (895)
T PF10220_consen 5 LQLDDDVVVVGVIGKSSLGKGKSSLINKLLDF----------------------NVFPSQTSEPDESGNTCQIEAYYD-- 60 (895)
T ss_pred cccCCCeEEEEEEeCCCcccchhhhHHHHHhc----------------------CCCCCcccccccCCCCceEEEEEc--
Confidence 45678999999999988 7789999999973 334332221 113556655532
Q ss_pred eecCCCCCccEEEEEecccccCcc
Q psy5032 85 IATLPTGEKAAVILLDTQGTFDSE 108 (193)
Q Consensus 85 ~~~~~~g~~~~vlllDTEG~~~~~ 108 (193)
.. -.||+||++++.|..
T Consensus 61 -----~e--~riLyLhl~si~D~~ 77 (895)
T PF10220_consen 61 -----TE--ERILYLHLQSILDTA 77 (895)
T ss_pred -----CC--CCEEEEEccCcCCHH
Confidence 12 349999999988754
No 104
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=96.54 E-value=0.038 Score=46.58 Aligned_cols=21 Identities=29% Similarity=0.121 Sum_probs=19.5
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-|.++|+.++|||+|+|.|.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg 22 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTN 22 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 477999999999999999997
No 105
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.54 E-value=0.014 Score=46.31 Aligned_cols=34 Identities=18% Similarity=-0.010 Sum_probs=25.5
Q ss_pred HHHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 4 YVKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 4 ~~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.++..+....++.. |.++|+.++|||+|+|+|.+
T Consensus 8 ~~~~~~~~~~~~~k-i~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 8 NVLSSLGLYNKEAK-ILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHHhhcccCCCE-EEEECCCCCCHHHHHHHHhc
Confidence 34455554444555 49999999999999999986
No 106
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.54 E-value=0.0073 Score=46.36 Aligned_cols=20 Identities=25% Similarity=-0.077 Sum_probs=18.9
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|+.++|||+|+|+|.+
T Consensus 3 i~v~G~~~~GKSsli~~l~~ 22 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTD 22 (161)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999986
No 107
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.54 E-value=0.0072 Score=45.83 Aligned_cols=20 Identities=20% Similarity=-0.014 Sum_probs=18.9
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|+.++|||+|+|.+++
T Consensus 2 i~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999996
No 108
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.51 E-value=0.007 Score=48.21 Aligned_cols=22 Identities=23% Similarity=0.099 Sum_probs=20.0
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..+.++|..+.|||+|+|.|.+
T Consensus 116 ~~~~~~G~~~vGKstlin~l~~ 137 (171)
T cd01856 116 IRAMVVGIPNVGKSTLINRLRG 137 (171)
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 3577999999999999999997
No 109
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=96.51 E-value=0.0084 Score=47.86 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=18.8
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|..++|||+|+|+|..
T Consensus 3 i~vvG~~~vGKSsLi~~~~~ 22 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVH 22 (193)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999999996
No 110
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.49 E-value=0.011 Score=43.38 Aligned_cols=20 Identities=20% Similarity=0.004 Sum_probs=19.0
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|+.++|||+|++.|++
T Consensus 2 I~V~G~~g~GKTsLi~~l~~ 21 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCG 21 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 67999999999999999997
No 111
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.49 E-value=0.0076 Score=49.74 Aligned_cols=58 Identities=24% Similarity=0.262 Sum_probs=37.4
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEEE
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVIL 98 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vll 98 (193)
|.|+|+.++|||.|+|+|.+. .|. .....|.|+-.....+ ...++..+.+-+
T Consensus 5 IvvvG~~~vGKTsLi~~l~~~-----------------------~~~---~~~~~ti~~d~~~~~i--~~~~~~~~~l~i 56 (211)
T cd04111 5 LIVIGDSTVGKSSLLKRFTEG-----------------------RFA---EVSDPTVGVDFFSRLI--EIEPGVRIKLQL 56 (211)
T ss_pred EEEECCCCCCHHHHHHHHHcC-----------------------CCC---CCCCceeceEEEEEEE--EECCCCEEEEEE
Confidence 789999999999999999962 121 1122355544333322 122455677889
Q ss_pred Eecccc
Q psy5032 99 LDTQGT 104 (193)
Q Consensus 99 lDTEG~ 104 (193)
.||.|.
T Consensus 57 ~Dt~G~ 62 (211)
T cd04111 57 WDTAGQ 62 (211)
T ss_pred EeCCcc
Confidence 999985
No 112
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=96.48 E-value=0.036 Score=49.85 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=22.6
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.....|+++|....|||+|+|.|.+
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~ 211 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTG 211 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999997
No 113
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=96.47 E-value=0.016 Score=46.58 Aligned_cols=20 Identities=20% Similarity=0.094 Sum_probs=19.0
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|+++|...+|||+|+|.|.+
T Consensus 3 i~i~G~~~~GKstLi~~l~~ 22 (192)
T cd01889 3 VGVLGHVDSGKTSLAKALSE 22 (192)
T ss_pred EEEEecCCCCHHHHHHHHHh
Confidence 78999999999999999996
No 114
>PRK03003 GTP-binding protein Der; Reviewed
Probab=96.46 E-value=0.051 Score=50.48 Aligned_cols=24 Identities=21% Similarity=0.059 Sum_probs=21.7
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+...|+|+|...+|||+|+|.|.+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~ 60 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILG 60 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Confidence 446799999999999999999997
No 115
>PRK04213 GTP-binding protein; Provisional
Probab=96.46 E-value=0.009 Score=48.09 Aligned_cols=24 Identities=21% Similarity=0.026 Sum_probs=21.2
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|.++|...+|||+|+|.|.+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~ 31 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTG 31 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345689999999999999999986
No 116
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.43 E-value=0.0039 Score=55.24 Aligned_cols=22 Identities=27% Similarity=0.125 Sum_probs=19.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+...+|+.+.|||+|+|.|..-
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 4557899999999999999974
No 117
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=96.43 E-value=0.0095 Score=46.35 Aligned_cols=20 Identities=25% Similarity=0.016 Sum_probs=18.8
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||+|+|++++
T Consensus 4 v~~vG~~~vGKTsli~~~~~ 23 (165)
T cd04140 4 VVVFGAGGVGKSSLVLRFVK 23 (165)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999986
No 118
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.42 E-value=0.017 Score=44.92 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=19.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.-+.++|..+.|||.|+|.|.+
T Consensus 102 ~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 102 GKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3459999999999999999996
No 119
>PLN03118 Rab family protein; Provisional
Probab=96.42 E-value=0.011 Score=48.47 Aligned_cols=20 Identities=25% Similarity=0.017 Sum_probs=18.7
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|..++|||+|+|+|+.
T Consensus 17 v~ivG~~~vGKTsli~~l~~ 36 (211)
T PLN03118 17 ILLIGDSGVGKSSLLVSFIS 36 (211)
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 66999999999999999986
No 120
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=96.42 E-value=0.0073 Score=46.84 Aligned_cols=20 Identities=30% Similarity=0.115 Sum_probs=18.5
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|+.++|||+|++.++.
T Consensus 2 i~vvG~~~~GKtsli~~~~~ 21 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLT 21 (165)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 67999999999999999985
No 121
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=96.39 E-value=0.009 Score=46.57 Aligned_cols=20 Identities=20% Similarity=0.011 Sum_probs=18.7
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|+.++|||.|++++..
T Consensus 4 i~iiG~~~~GKTsl~~~~~~ 23 (175)
T cd01870 4 LVIVGDGACGKTCLLIVFSK 23 (175)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 77999999999999999986
No 122
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.39 E-value=0.0055 Score=50.18 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-||+++||.++|||+||.++.+++.
T Consensus 29 eivtlMGPSGcGKSTLls~~~G~La 53 (213)
T COG4136 29 EIVTLMGPSGCGKSTLLSWMIGALA 53 (213)
T ss_pred cEEEEECCCCccHHHHHHHHHhhcc
Confidence 4899999999999999999999763
No 123
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=96.38 E-value=0.027 Score=47.52 Aligned_cols=21 Identities=29% Similarity=0.186 Sum_probs=19.5
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|+|+|....|||+|++.|+..
T Consensus 3 vaiiGhvd~GKTTL~d~Ll~~ 23 (222)
T cd01885 3 ICIIAHVDHGKTTLSDSLLAS 23 (222)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999974
No 124
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.34 E-value=0.01 Score=46.26 Aligned_cols=20 Identities=25% Similarity=-0.009 Sum_probs=18.8
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||+|+|++.+
T Consensus 4 i~liG~~~~GKTsli~~~~~ 23 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQ 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999986
No 125
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=96.34 E-value=0.01 Score=48.17 Aligned_cols=23 Identities=26% Similarity=-0.119 Sum_probs=20.5
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+.=|.|+|+.++|||+|+|++.+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~ 28 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFAD 28 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 44588999999999999999986
No 126
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.34 E-value=0.017 Score=44.62 Aligned_cols=25 Identities=20% Similarity=-0.005 Sum_probs=22.6
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
++..-|.++|+.++|||+|++.|..
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~ 29 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQ 29 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHh
Confidence 4568899999999999999999985
No 127
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=96.33 E-value=0.042 Score=46.58 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=19.6
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|+++|...+|||+|.|+|+..
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~ 22 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYT 22 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999974
No 128
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=96.33 E-value=0.011 Score=45.37 Aligned_cols=58 Identities=22% Similarity=0.187 Sum_probs=40.4
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEEE
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVIL 98 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vll 98 (193)
|.|+|+.++|||+|++.+.+. .|. .....|.|+-....++.. ++..+.+-+
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~-----------------------~~~---~~~~~t~~~~~~~~~~~~---~~~~~~l~i 52 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLING-----------------------EFP---ENYIPTIGIDSYSKEVSI---DGKPVNLEI 52 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHS-----------------------STT---SSSETTSSEEEEEEEEEE---TTEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhh-----------------------ccc---cccccccccccccccccc---ccccccccc
Confidence 678999999999999999862 232 123345566555554432 366788999
Q ss_pred Eeccccc
Q psy5032 99 LDTQGTF 105 (193)
Q Consensus 99 lDTEG~~ 105 (193)
.|+.|..
T Consensus 53 ~D~~g~~ 59 (162)
T PF00071_consen 53 WDTSGQE 59 (162)
T ss_dssp EEETTSG
T ss_pred ccccccc
Confidence 9999854
No 129
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=96.32 E-value=0.013 Score=45.66 Aligned_cols=20 Identities=20% Similarity=-0.031 Sum_probs=18.6
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|+.++|||+|+|++..
T Consensus 3 i~i~G~~~~GKTsl~~~~~~ 22 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYAN 22 (174)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999999986
No 130
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.32 E-value=0.013 Score=46.77 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=18.8
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|+.++|||.|+|++.+
T Consensus 3 i~v~G~~~vGKSsli~~~~~ 22 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFTE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999986
No 131
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.31 E-value=0.05 Score=44.73 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=19.4
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|+|+|...+|||+|+++|+..
T Consensus 3 v~iiG~~~~GKTtL~~~l~~~ 23 (213)
T cd04167 3 VAIAGHLHHGKTSLLDMLIEQ 23 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 679999999999999999974
No 132
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.31 E-value=0.014 Score=47.29 Aligned_cols=20 Identities=10% Similarity=0.084 Sum_probs=18.7
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|+.++|||+|+|+|..
T Consensus 3 ivivG~~~vGKTsli~~l~~ 22 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVH 22 (201)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67999999999999999996
No 133
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.29 E-value=0.0097 Score=46.80 Aligned_cols=20 Identities=20% Similarity=0.024 Sum_probs=18.7
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||+|+|.+..
T Consensus 4 v~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 4 IAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999999996
No 134
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=96.28 E-value=0.0088 Score=48.23 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.7
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+.-|+++|...+|||+|+|+|++
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~ 24 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLK 24 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHH
Confidence 44689999999999999999996
No 135
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.27 E-value=0.056 Score=46.82 Aligned_cols=21 Identities=19% Similarity=0.195 Sum_probs=19.4
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|+|+|...+|||+|.|.|+..
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~ 22 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYY 22 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999964
No 136
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.26 E-value=0.039 Score=45.42 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=20.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.-|+|+|...+|||+|.|.|+..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~ 25 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKV 25 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999999975
No 137
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=96.26 E-value=0.025 Score=46.46 Aligned_cols=21 Identities=29% Similarity=0.170 Sum_probs=19.5
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|+|+|...+|||+|+|+|+..
T Consensus 2 i~iiG~~~~GKStL~~~Ll~~ 22 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYD 22 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHH
Confidence 789999999999999999974
No 138
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=96.26 E-value=0.01 Score=46.27 Aligned_cols=20 Identities=20% Similarity=-0.074 Sum_probs=18.4
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|+.++|||.|+|++.+
T Consensus 1 i~i~G~~~vGKTsli~~~~~ 20 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTT 20 (174)
T ss_pred CEEECCCCCCHHHHHHHHHh
Confidence 57899999999999999986
No 139
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=96.26 E-value=0.016 Score=49.41 Aligned_cols=21 Identities=24% Similarity=0.097 Sum_probs=19.3
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|+++|..++|||+|+|+|+..
T Consensus 2 i~ivG~~gsGKStL~~~Ll~~ 22 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYA 22 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999974
No 140
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.24 E-value=0.0091 Score=52.00 Aligned_cols=39 Identities=18% Similarity=0.059 Sum_probs=29.3
Q ss_pred HHHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 4 YVKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 4 ~~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
+.+..+-...++-.||+|.|+.+.|||+|.+.|..++..
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~ 55 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRE 55 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhh
Confidence 344444445567889999999999999999999997653
No 141
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.24 E-value=0.0043 Score=45.94 Aligned_cols=23 Identities=22% Similarity=0.010 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
||.|.|+.++|||++.+.|...+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999853
No 142
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.22 E-value=0.015 Score=46.00 Aligned_cols=20 Identities=20% Similarity=-0.032 Sum_probs=18.9
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|+.++|||+|+|++.+
T Consensus 3 i~vvG~~~vGKTsli~~l~~ 22 (187)
T cd04132 3 IVVVGDGGCGKTCLLIVYSQ 22 (187)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999996
No 143
>PRK03003 GTP-binding protein Der; Reviewed
Probab=96.17 E-value=0.051 Score=50.46 Aligned_cols=23 Identities=26% Similarity=0.131 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..-|+++|....|||+|+|.|++
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~ 233 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAG 233 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999997
No 144
>CHL00071 tufA elongation factor Tu
Probab=96.16 E-value=0.059 Score=49.18 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=23.4
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+|..-|+++|...+|||+|+|.|++.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~ 35 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMT 35 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 345566999999999999999999975
No 145
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.15 E-value=0.022 Score=46.18 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=26.8
Q ss_pred HHHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 4 YVKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 4 ~~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+...+++..-++=..+.|+|+.++|||+|++.|++.+
T Consensus 13 ~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 13 LQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3333343333334678999999999999999999864
No 146
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=96.12 E-value=0.016 Score=44.61 Aligned_cols=20 Identities=20% Similarity=-0.049 Sum_probs=18.7
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|..++|||+|++.++.
T Consensus 4 i~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04176 4 VVVLGSGGVGKSALTVQFVS 23 (163)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999986
No 147
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=96.11 E-value=0.039 Score=51.15 Aligned_cols=21 Identities=38% Similarity=0.249 Sum_probs=19.8
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.|+++|...+|||+|+|.|++
T Consensus 217 kV~ivG~~nvGKSSLln~L~~ 237 (449)
T PRK05291 217 KVVIAGRPNVGKSSLLNALLG 237 (449)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999997
No 148
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.09 E-value=0.0072 Score=49.67 Aligned_cols=29 Identities=7% Similarity=-0.018 Sum_probs=25.0
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+.+-.||+|+|+.++|||+|++.|.+.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567899999999999999999998654
No 149
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.09 E-value=0.06 Score=52.62 Aligned_cols=23 Identities=26% Similarity=0.112 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..-|+++|...+|||+|+|.|++
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~ 472 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTH 472 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999997
No 150
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.08 E-value=0.06 Score=45.10 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=23.4
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
..|=.+|+|+|+.++|||+|+|.|++.
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~ 62 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKN 62 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345678999999999999999999974
No 151
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=96.07 E-value=0.02 Score=44.55 Aligned_cols=20 Identities=20% Similarity=-0.046 Sum_probs=18.6
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||+|+++++.
T Consensus 3 i~vvG~~~~GKTsli~~~~~ 22 (161)
T cd04117 3 LLLIGDSGVGKTCLLCRFTD 22 (161)
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 77999999999999999985
No 152
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.04 E-value=0.0076 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=20.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.-|.++|...+|||+|+|.|++.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 36788999999999999999984
No 153
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=96.04 E-value=0.015 Score=44.50 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=18.4
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||+|+|+|.+
T Consensus 2 i~~vG~~~~GKTsl~~~l~~ 21 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKP 21 (162)
T ss_pred EEEECCCCCCHHHHHHHHcc
Confidence 57889999999999999986
No 154
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=96.02 E-value=0.059 Score=46.56 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+.-|+|+|...+|||+|+|.|+..
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~ 25 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLF 25 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHh
Confidence 346899999999999999999964
No 155
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=96.01 E-value=0.021 Score=45.70 Aligned_cols=25 Identities=24% Similarity=0.142 Sum_probs=20.9
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
++.+ -|.++|+.++|||+|+|+|.+
T Consensus 15 ~~~~-~i~ivG~~~~GKTsli~~l~~ 39 (184)
T smart00178 15 NKHA-KILFLGLDNAGKTTLLHMLKN 39 (184)
T ss_pred cccC-EEEEECCCCCCHHHHHHHHhc
Confidence 4444 467999999999999999986
No 156
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=96.00 E-value=0.026 Score=44.61 Aligned_cols=23 Identities=22% Similarity=0.067 Sum_probs=20.2
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..-|.++|+.++|||+|+|+|..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~ 37 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLL 37 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHcc
Confidence 34577999999999999999985
No 157
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=95.99 E-value=0.089 Score=42.51 Aligned_cols=20 Identities=25% Similarity=0.105 Sum_probs=18.6
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|..++|||.|+|.++.
T Consensus 2 v~vvG~~~vGKTsll~~~~~ 21 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLY 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67899999999999999986
No 158
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=95.98 E-value=0.018 Score=52.22 Aligned_cols=71 Identities=15% Similarity=0.009 Sum_probs=42.1
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEEE
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVIL 98 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vll 98 (193)
|=++|+.++|||+++|.|++..... . .......+ ....+++-|=..-..+. .+|-.+.+-+
T Consensus 26 im~~G~sG~GKttfiNtL~~~~l~~------~----------~~~~~~~~--~~~~~~~~i~~~~~~l~-e~~~~~~l~v 86 (373)
T COG5019 26 IMVVGESGLGKTTFINTLFGTSLVD------E----------TEIDDIRA--EGTSPTLEIKITKAELE-EDGFHLNLTV 86 (373)
T ss_pred EEEecCCCCchhHHHHhhhHhhccC------C----------CCccCccc--ccCCcceEEEeeeeeee-cCCeEEEEEE
Confidence 5689999999999999999852210 0 00011111 11233333332222222 2566789999
Q ss_pred EecccccCcc
Q psy5032 99 LDTQGTFDSE 108 (193)
Q Consensus 99 lDTEG~~~~~ 108 (193)
+||+|++|.=
T Consensus 87 IDtpGfGD~i 96 (373)
T COG5019 87 IDTPGFGDFI 96 (373)
T ss_pred eccCCccccc
Confidence 9999999853
No 159
>KOG1547|consensus
Probab=95.98 E-value=0.022 Score=49.71 Aligned_cols=71 Identities=24% Similarity=0.134 Sum_probs=44.4
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEEE
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVIL 98 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vll 98 (193)
|-|+|..+.|||+|.|.|+.--.. +++..|.. .-.-+.|.-|-.-.+.+ ..+|-++.+-+
T Consensus 49 IMVVgqSglgkstlinTlf~s~v~-----~~s~~~~~------------~~p~pkT~eik~~thvi---eE~gVklkltv 108 (336)
T KOG1547|consen 49 IMVVGQSGLGKSTLINTLFKSHVS-----DSSSSDNS------------AEPIPKTTEIKSITHVI---EEKGVKLKLTV 108 (336)
T ss_pred EEEEecCCCCchhhHHHHHHHHHh-----hccCCCcc------------cCcccceEEEEeeeeee---eecceEEEEEE
Confidence 567899999999999999974221 11111110 01234455555544443 13566778999
Q ss_pred EecccccCccc
Q psy5032 99 LDTQGTFDSES 109 (193)
Q Consensus 99 lDTEG~~~~~~ 109 (193)
+||+|++|.=.
T Consensus 109 iDTPGfGDqIn 119 (336)
T KOG1547|consen 109 IDTPGFGDQIN 119 (336)
T ss_pred ecCCCcccccC
Confidence 99999998644
No 160
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=95.95 E-value=0.025 Score=44.77 Aligned_cols=20 Identities=15% Similarity=0.203 Sum_probs=18.8
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|..++|||.|+|++++
T Consensus 3 i~ivG~~~vGKTsli~~~~~ 22 (170)
T cd04108 3 VIVVGDLSVGKTCLINRFCK 22 (170)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67999999999999999996
No 161
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=95.95 E-value=0.022 Score=43.95 Aligned_cols=21 Identities=24% Similarity=0.018 Sum_probs=18.9
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-|.++|...+|||+|+|.+..
T Consensus 3 ki~~~G~~~~GKTsli~~~~~ 23 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQ 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378899999999999999985
No 162
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.94 E-value=0.0065 Score=49.44 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=22.6
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
||+|+|+.++|||+|.+.|...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999999875
No 163
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=95.94 E-value=0.027 Score=43.90 Aligned_cols=20 Identities=25% Similarity=0.012 Sum_probs=18.6
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|...+|||+|+|+|..
T Consensus 3 v~ivG~~~vGKTsl~~~l~~ 22 (166)
T cd01893 3 IVLIGDEGVGKSSLIMSLVS 22 (166)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67889999999999999986
No 164
>PLN03110 Rab GTPase; Provisional
Probab=95.93 E-value=0.023 Score=47.01 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=39.8
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCcc
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKA 94 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~ 94 (193)
...=|.++|+.++|||+|+++|.+. .|.. ....|.|+-.....+.+ ++..+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~-----------------------~~~~---~~~~t~g~~~~~~~v~~---~~~~~ 61 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRN-----------------------EFCL---ESKSTIGVEFATRTLQV---EGKTV 61 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC-----------------------CCCC---CCCCceeEEEEEEEEEE---CCEEE
Confidence 3456889999999999999999862 2211 12345565444333322 34556
Q ss_pred EEEEEecccc
Q psy5032 95 AVILLDTQGT 104 (193)
Q Consensus 95 ~vlllDTEG~ 104 (193)
.+-+.||.|.
T Consensus 62 ~l~l~Dt~G~ 71 (216)
T PLN03110 62 KAQIWDTAGQ 71 (216)
T ss_pred EEEEEECCCc
Confidence 7888899884
No 165
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=95.91 E-value=0.022 Score=43.61 Aligned_cols=20 Identities=30% Similarity=-0.013 Sum_probs=18.6
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||+|+|+|.+
T Consensus 2 i~i~G~~~~GKTsl~~~~~~ 21 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKH 21 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 67899999999999999996
No 166
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=95.91 E-value=0.021 Score=46.72 Aligned_cols=62 Identities=16% Similarity=0.045 Sum_probs=39.1
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCcc
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKA 94 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~ 94 (193)
+-.-|.++|+.++|||+|+|+++.. .|. ..-..|.|+-.....+. .+++.+
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~-----------------------~~~---~~~~~t~~~~~~~~~~~---~~~~~i 58 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTG-----------------------EFE---KKYIPTLGVEVHPLKFY---TNCGPI 58 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhC-----------------------CCC---CCCCCccceEEEEEEEE---ECCeEE
Confidence 3345899999999999999876641 111 11224555555443332 245567
Q ss_pred EEEEEeccccc
Q psy5032 95 AVILLDTQGTF 105 (193)
Q Consensus 95 ~vlllDTEG~~ 105 (193)
.+-+.||.|..
T Consensus 59 ~i~~~Dt~g~~ 69 (215)
T PTZ00132 59 CFNVWDTAGQE 69 (215)
T ss_pred EEEEEECCCch
Confidence 88899998753
No 167
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=95.86 E-value=0.016 Score=44.05 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=16.8
Q ss_pred eeCCCCCChHHHHHHHHh
Q psy5032 21 EKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 21 V~G~~rtGKSfLLN~Ll~ 38 (193)
++|...+|||+|+|.+.+
T Consensus 1 l~G~~~~GKssl~~~~~~ 18 (158)
T cd01879 1 LVGNPNVGKTTLFNALTG 18 (158)
T ss_pred CCCCCCCCHHHHHHHHhc
Confidence 589999999999999987
No 168
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=95.84 E-value=0.022 Score=52.79 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=21.0
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+.++. |.++|+..+|||+|+|.|++
T Consensus 201 ~~g~k-VvIvG~~nvGKSSLiN~L~~ 225 (442)
T TIGR00450 201 DDGFK-LAIVGSPNVGKSSLLNALLK 225 (442)
T ss_pred hcCCE-EEEECCCCCcHHHHHHHHhC
Confidence 33444 67899999999999999997
No 169
>COG1160 Predicted GTPases [General function prediction only]
Probab=95.84 E-value=0.079 Score=49.28 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=56.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCc-ccceEEEeeccceecCCCCCccE
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSER-DTTGILMWSHVYIATLPTGEKAA 95 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~-~T~GIwmw~~p~~~~~~~g~~~~ 95 (193)
-+|+|+|....|||+|.|+|.+.-.+ + ..-++ |-+.+| ...+-| .+. .
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~A-----------I------V~D~p-GvTRDr~y~~~~~-----------~~~--~ 52 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIA-----------I------VSDTP-GVTRDRIYGDAEW-----------LGR--E 52 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeee-----------E------eecCC-CCccCCccceeEE-----------cCc--e
Confidence 47999999999999999999984111 0 00110 112233 233444 222 3
Q ss_pred EEEEecccccCcccc-ccc---hhHHHHHHHhhhceEEEeC--cccCChhHHHHHHHHHH
Q psy5032 96 VILLDTQGTFDSEST-VRD---CATVFALSTMLSSIQIYNL--SQNIQEDDLQHLQLFTE 149 (193)
Q Consensus 96 vlllDTEG~~~~~~~-~~~---d~~if~L~~LLSS~~IyN~--~~~i~~~~l~~L~l~~~ 149 (193)
+.++||.|+.+...+ ... .....|+. -+.+.||=+ ...|+..|-+--+++-+
T Consensus 53 f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~--eADvilfvVD~~~Git~~D~~ia~~Lr~ 110 (444)
T COG1160 53 FILIDTGGLDDGDEDELQELIREQALIAIE--EADVILFVVDGREGITPADEEIAKILRR 110 (444)
T ss_pred EEEEECCCCCcCCchHHHHHHHHHHHHHHH--hCCEEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 889999999865421 111 22222322 356655555 44578777665555543
No 170
>PLN03108 Rab family protein; Provisional
Probab=95.81 E-value=0.027 Score=46.24 Aligned_cols=22 Identities=27% Similarity=0.012 Sum_probs=19.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.=|.|+|+.++|||+|+|+|.+
T Consensus 7 ~kivivG~~gvGKStLi~~l~~ 28 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTD 28 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3477999999999999999986
No 171
>COG1161 Predicted GTPases [General function prediction only]
Probab=95.81 E-value=0.031 Score=49.64 Aligned_cols=21 Identities=29% Similarity=0.207 Sum_probs=19.9
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-|.|+|-.-.|||+|+|.|.+
T Consensus 134 ~v~vvG~PNVGKSslIN~L~~ 154 (322)
T COG1161 134 RVGVVGYPNVGKSTLINRLLG 154 (322)
T ss_pred EEEEEcCCCCcHHHHHHHHhc
Confidence 399999999999999999997
No 172
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=95.81 E-value=0.16 Score=39.77 Aligned_cols=20 Identities=20% Similarity=0.039 Sum_probs=18.5
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+..+|||.|+|+|.+
T Consensus 2 i~~~G~~~~GKTsl~~~l~~ 21 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQG 21 (167)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 67999999999999999986
No 173
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=95.80 E-value=0.034 Score=43.63 Aligned_cols=21 Identities=24% Similarity=0.124 Sum_probs=18.9
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-|.++|+.++|||+|+|+|.+
T Consensus 16 kv~ivG~~~~GKTsL~~~l~~ 36 (173)
T cd04154 16 RILILGLDNAGKTTILKKLLG 36 (173)
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 456999999999999999986
No 174
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=95.79 E-value=0.029 Score=44.42 Aligned_cols=20 Identities=20% Similarity=-0.061 Sum_probs=18.6
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|..++|||+|++++..
T Consensus 5 i~vvG~~~vGKTsL~~~~~~ 24 (172)
T cd04141 5 IVMLGAGGVGKSAVTMQFIS 24 (172)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 68999999999999999986
No 175
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=95.78 E-value=0.057 Score=48.33 Aligned_cols=24 Identities=17% Similarity=-0.032 Sum_probs=21.6
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-++=|+++|...+|||+|||.|.+
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~ 180 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSA 180 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHc
Confidence 356699999999999999999986
No 176
>KOG2655|consensus
Probab=95.77 E-value=0.026 Score=51.29 Aligned_cols=70 Identities=19% Similarity=0.078 Sum_probs=41.8
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEEE
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVIL 98 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vll 98 (193)
+=|+|+.+.|||+|+|.|+..... +.....++. ..-..|..|=. .+..++ ++|-++.+=+
T Consensus 24 lmvvG~sGlGKsTfiNsLf~~~l~------~~~~~~~~~-----------~~~~~t~~i~~--~~~~ie-e~g~~l~Ltv 83 (366)
T KOG2655|consen 24 LMVVGESGLGKSTFINSLFLTDLS------GNREVPGAS-----------ERIKETVEIES--TKVEIE-ENGVKLNLTV 83 (366)
T ss_pred EEEecCCCccHHHHHHHHHhhhcc------CCcccCCcc-----------cCccccceeee--eeeeec-CCCeEEeeEE
Confidence 568999999999999999984111 000001110 11112444432 233332 4677788999
Q ss_pred EecccccCcc
Q psy5032 99 LDTQGTFDSE 108 (193)
Q Consensus 99 lDTEG~~~~~ 108 (193)
+||+|++|.-
T Consensus 84 idtPGfGD~v 93 (366)
T KOG2655|consen 84 IDTPGFGDAV 93 (366)
T ss_pred eccCCCcccc
Confidence 9999999853
No 177
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=95.76 E-value=0.026 Score=46.96 Aligned_cols=20 Identities=20% Similarity=-0.029 Sum_probs=18.6
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.+.|||.|+|.+..
T Consensus 3 I~lvG~~gvGKTsLi~~~~~ 22 (221)
T cd04148 3 VVMLGSPGVGKSSLASQFTS 22 (221)
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 78999999999999999975
No 178
>PRK06696 uridine kinase; Validated
Probab=95.75 E-value=0.017 Score=48.20 Aligned_cols=37 Identities=11% Similarity=-0.000 Sum_probs=29.4
Q ss_pred HHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 5 VKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 5 ~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
|..+.+....+..+|+|.|+.++|||+|.+.|...+.
T Consensus 11 a~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 11 AEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred HHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344444455677999999999999999999999875
No 179
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.71 E-value=0.0079 Score=45.47 Aligned_cols=23 Identities=26% Similarity=0.105 Sum_probs=20.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+++|+|+.++|||+|++.|.+.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 36899999999999999999984
No 180
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=95.71 E-value=0.034 Score=42.56 Aligned_cols=20 Identities=20% Similarity=-0.112 Sum_probs=18.9
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|..++|||+|+|++.+
T Consensus 2 i~iiG~~~~GKssli~~~~~ 21 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKL 21 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 67999999999999999997
No 181
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=95.67 E-value=0.029 Score=44.80 Aligned_cols=23 Identities=17% Similarity=-0.135 Sum_probs=19.5
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
++. |.++|..++|||.|+|++..
T Consensus 3 ~~k-v~~vG~~~~GKTsli~~~~~ 25 (183)
T cd04152 3 SLH-IVMLGLDSAGKTTVLYRLKF 25 (183)
T ss_pred ceE-EEEECCCCCCHHHHHHHHhc
Confidence 344 66889999999999999985
No 182
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=95.65 E-value=0.022 Score=45.76 Aligned_cols=20 Identities=20% Similarity=-0.167 Sum_probs=18.5
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|..++|||+|+|+|..
T Consensus 2 i~ivG~~~vGKTsli~~l~~ 21 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCL 21 (190)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67899999999999999985
No 183
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=95.64 E-value=0.031 Score=43.87 Aligned_cols=20 Identities=20% Similarity=-0.008 Sum_probs=18.2
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||+|+|+|.+
T Consensus 2 vvlvG~~~~GKTsl~~~l~~ 21 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQ 21 (169)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999986
No 184
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.62 E-value=0.0095 Score=48.32 Aligned_cols=23 Identities=9% Similarity=0.078 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
||+|.|+.++|||+|++.|.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999875
No 185
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=95.60 E-value=0.044 Score=43.00 Aligned_cols=20 Identities=15% Similarity=-0.107 Sum_probs=18.2
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||.|++.+..
T Consensus 3 ~~i~G~~~~GKtsl~~~~~~ 22 (173)
T cd04130 3 CVLVGDGAVGKTSLIVSYTT 22 (173)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999998875
No 186
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=95.58 E-value=0.1 Score=50.14 Aligned_cols=25 Identities=40% Similarity=0.359 Sum_probs=21.8
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
++.=|+|+|....|||+|+++|+..
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~ 26 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEY 26 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHH
Confidence 3556899999999999999999974
No 187
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.56 E-value=0.02 Score=47.88 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=27.2
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
...+-.+|+|.|+.++|||+|++.|.+.+..
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4567889999999999999999999987654
No 188
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=95.56 E-value=0.05 Score=42.89 Aligned_cols=25 Identities=32% Similarity=0.080 Sum_probs=22.7
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+++.=|.++|..++|||.|+|++++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~ 26 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG 26 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhC
Confidence 4677899999999999999999986
No 189
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.52 E-value=0.01 Score=49.82 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=22.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
||+|+|+.++|||+|++.|.+.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999774
No 190
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=95.51 E-value=0.088 Score=46.93 Aligned_cols=24 Identities=17% Similarity=-0.032 Sum_probs=21.8
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-++=|+++|...+|||+|+|.|.+
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~ 179 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSA 179 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhc
Confidence 367799999999999999999997
No 191
>PRK13796 GTPase YqeH; Provisional
Probab=95.51 E-value=0.035 Score=50.10 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=19.6
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-|.|+|....|||+|+|.|++.
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhh
Confidence 4678999999999999999973
No 192
>PRK09866 hypothetical protein; Provisional
Probab=95.48 E-value=0.033 Score=54.28 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=22.0
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.-.+|+|+|++++|||+|+|.|++
T Consensus 68 ~~~~valvG~sgaGKSTLiNaL~G 91 (741)
T PRK09866 68 LEMVLAIVGTMKAGKSTTINAIVG 91 (741)
T ss_pred cceEEEEECCCCCCHHHHHHHHhC
Confidence 337899999999999999999997
No 193
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.48 E-value=0.012 Score=50.31 Aligned_cols=22 Identities=27% Similarity=0.066 Sum_probs=20.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-||+|+||.+||||+||.-|.+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4899999999999999999886
No 194
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.47 E-value=0.019 Score=44.63 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=22.9
Q ss_pred hcCCCCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 9 HRRPSDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 9 ~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+...+++. |.|+|+.++|||+|+|.|.+
T Consensus 8 ~~~~~~~~~-v~i~G~~g~GKStLl~~l~~ 36 (173)
T cd04155 8 LRKSSEEPR-ILILGLDNAGKTTILKQLAS 36 (173)
T ss_pred hhccCCccE-EEEEccCCCCHHHHHHHHhc
Confidence 334444444 89999999999999999997
No 195
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.46 E-value=0.024 Score=49.04 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=29.6
Q ss_pred HHhcCCC-CCceEEEeeCCCCCChHHHHHHHHhhhhhc
Q psy5032 7 VTHRRPS-DNDSKNSEKSAFRKGKSFLLDFLLRYMNFT 43 (193)
Q Consensus 7 ~~~~~~~-~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~ 43 (193)
.++...+ .+-.+|++.|+.|+|||++||.+...+...
T Consensus 10 ~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 10 EIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3444443 667789999999999999999999987654
No 196
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.45 E-value=0.012 Score=51.19 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=24.0
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhhhc
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMNFT 43 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~~~ 43 (193)
.+++|+||.++|||+||+.|.+.+..+
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~p~ 55 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKPK 55 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 478999999999999999999987643
No 197
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=95.42 E-value=0.033 Score=43.94 Aligned_cols=21 Identities=19% Similarity=-0.047 Sum_probs=18.6
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
=|.++|+.++|||+|+++|..
T Consensus 11 kv~i~G~~~~GKTsli~~l~~ 31 (168)
T cd04149 11 RILMLGLDAAGKTTILYKLKL 31 (168)
T ss_pred EEEEECcCCCCHHHHHHHHcc
Confidence 366999999999999999975
No 198
>PRK12735 elongation factor Tu; Reviewed
Probab=95.41 E-value=0.084 Score=47.97 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=22.9
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+|..-|+++|...+|||+|+|.|++.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~ 35 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKV 35 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHh
Confidence 45666999999999999999999974
No 199
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.013 Score=48.85 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 200
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.38 E-value=0.02 Score=46.91 Aligned_cols=26 Identities=8% Similarity=-0.008 Sum_probs=23.7
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+-.+|+|.|+.++|||+|++.|.+.+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999976
No 201
>CHL00189 infB translation initiation factor 2; Provisional
Probab=95.37 E-value=0.11 Score=51.24 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=22.3
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+..+|+|+|....|||+|+|.|..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~ 266 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRK 266 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHh
Confidence 3566899999999999999999986
No 202
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.36 E-value=0.072 Score=49.44 Aligned_cols=29 Identities=14% Similarity=-0.043 Sum_probs=25.1
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
.+-.||.++|++++|||+++..|..++..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34589999999999999999999987653
No 203
>PRK04004 translation initiation factor IF-2; Validated
Probab=95.36 E-value=0.095 Score=50.34 Aligned_cols=21 Identities=24% Similarity=0.142 Sum_probs=19.9
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+|+|+|....|||+|+|.|.+
T Consensus 8 ~V~i~Gh~~~GKTSLl~~l~~ 28 (586)
T PRK04004 8 IVVVLGHVDHGKTTLLDKIRG 28 (586)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 699999999999999999976
No 204
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=95.35 E-value=0.039 Score=42.44 Aligned_cols=20 Identities=20% Similarity=-0.081 Sum_probs=18.1
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+..+|||.|+|+|..
T Consensus 2 v~lvG~~~~GKTsl~~~l~~ 21 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQL 21 (158)
T ss_pred EEEECCCCCCHHHHHHHHcc
Confidence 57889999999999999975
No 205
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=95.33 E-value=0.038 Score=43.37 Aligned_cols=20 Identities=25% Similarity=0.006 Sum_probs=18.7
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||+|++++.+
T Consensus 2 i~ivG~~~vGKTsli~~~~~ 21 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSS 21 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67899999999999999996
No 206
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=95.32 E-value=0.061 Score=43.27 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=38.5
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEEE
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVIL 98 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vll 98 (193)
|.++|..+.|||.|++++... .|. ..-..|.|+-...+.+.. +++.+.+-+
T Consensus 3 i~vlG~~~vGKTsLi~~~~~~-----------------------~f~---~~~~~T~g~~~~~~~i~~---~~~~~~l~i 53 (182)
T cd04128 3 IGLLGDAQIGKTSLMVKYVEG-----------------------EFD---EDYIQTLGVNFMEKTISI---RGTEITFSI 53 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhC-----------------------CCC---CCCCCccceEEEEEEEEE---CCEEEEEEE
Confidence 678899999999999999862 221 112346665444333321 456678899
Q ss_pred Eeccccc
Q psy5032 99 LDTQGTF 105 (193)
Q Consensus 99 lDTEG~~ 105 (193)
.||.|..
T Consensus 54 wDt~G~~ 60 (182)
T cd04128 54 WDLGGQR 60 (182)
T ss_pred EeCCCch
Confidence 9999864
No 207
>PTZ00301 uridine kinase; Provisional
Probab=95.31 E-value=0.019 Score=48.10 Aligned_cols=26 Identities=19% Similarity=0.032 Sum_probs=22.7
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
|.-+|+|.|+.+||||+|.+.|...+
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHH
Confidence 45799999999999999999887654
No 208
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=95.30 E-value=0.05 Score=44.70 Aligned_cols=20 Identities=20% Similarity=0.047 Sum_probs=18.7
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+..+|||.|+++|..
T Consensus 3 vll~G~~~sGKTsL~~~l~~ 22 (203)
T cd04105 3 VLLLGPSDSGKTALFTKLTT 22 (203)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 67899999999999999986
No 209
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.29 E-value=0.019 Score=39.48 Aligned_cols=25 Identities=24% Similarity=0.097 Sum_probs=22.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
+..|.|+.++|||+||+.+.--|+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6889999999999999999876654
No 210
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=95.28 E-value=0.048 Score=43.75 Aligned_cols=20 Identities=25% Similarity=0.144 Sum_probs=18.6
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|+.++|||+|++++.+
T Consensus 3 ivivG~~~vGKTsli~~~~~ 22 (189)
T cd04134 3 VVVLGDGACGKTSLLNVFTR 22 (189)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67999999999999999986
No 211
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.28 E-value=0.022 Score=55.08 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=31.6
Q ss_pred HHHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 4 YVKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 4 ~~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.|..+++..+.+..||+|+|+.++|||+|++.|.+.+
T Consensus 53 ra~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 53 RACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 4566666666778999999999999999999999865
No 212
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.27 E-value=0.015 Score=47.68 Aligned_cols=23 Identities=22% Similarity=0.119 Sum_probs=21.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+||+.|.+.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999984
No 213
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.26 E-value=0.016 Score=47.34 Aligned_cols=24 Identities=25% Similarity=0.102 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++|+|+.++|||+||+.|.+.+
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999853
No 214
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.25 E-value=0.018 Score=39.46 Aligned_cols=23 Identities=17% Similarity=0.041 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|.++|+.++|||++++.|...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999864
No 215
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=95.24 E-value=0.093 Score=49.60 Aligned_cols=24 Identities=21% Similarity=0.037 Sum_probs=21.9
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-++-|+++|...+|||+|+|.|.+
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~ 181 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSA 181 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhc
Confidence 367799999999999999999997
No 216
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.22 E-value=0.016 Score=47.57 Aligned_cols=22 Identities=18% Similarity=-0.023 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999984
No 217
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.22 E-value=0.016 Score=46.63 Aligned_cols=22 Identities=32% Similarity=0.055 Sum_probs=20.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999984
No 218
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=95.21 E-value=0.092 Score=43.58 Aligned_cols=27 Identities=15% Similarity=-0.076 Sum_probs=22.3
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+.+-.=|.++|..++|||+|+++++.
T Consensus 9 ~~~~~~Ki~vvG~~gvGKTsli~~~~~ 35 (219)
T PLN03071 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT 35 (219)
T ss_pred cCCCceEEEEECcCCCCHHHHHHHHhh
Confidence 344555688999999999999999875
No 219
>PRK07667 uridine kinase; Provisional
Probab=95.21 E-value=0.034 Score=45.41 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=26.5
Q ss_pred hcCCCCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 9 HRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 9 ~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+...+..-.||+|.|+.++|||+|.+.|...+.
T Consensus 10 ~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 10 MKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 333333348999999999999999999999775
No 220
>PTZ00416 elongation factor 2; Provisional
Probab=95.21 E-value=0.19 Score=50.10 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=29.0
Q ss_pred HHHHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 3 EYVKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 3 e~~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|....+.+.. .++.-|+|+|...+|||+|++.|+..
T Consensus 7 ~~~~~~~~~~-~~irni~iiGh~d~GKTTL~~~Ll~~ 42 (836)
T PTZ00416 7 DQIREIMDNP-DQIRNMSVIAHVDHGKSTLTDSLVCK 42 (836)
T ss_pred HHHHHHhhCc-cCcCEEEEECCCCCCHHHHHHHHHHh
Confidence 4455555554 56778999999999999999999974
No 221
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=95.21 E-value=0.063 Score=44.36 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=38.8
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEEE
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVIL 98 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vll 98 (193)
|.++|..+.|||.|++++.. ..|. ..-..|.|+-...+.+.+ +++.+.+-+
T Consensus 3 vvvlG~~gVGKTSli~r~~~-----------------------~~f~---~~~~~Ti~~~~~~~~i~~---~~~~v~l~i 53 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTD-----------------------DTFC---EACKSGVGVDFKIKTVEL---RGKKIRLQI 53 (202)
T ss_pred EEEECcCCCCHHHHHHHHHh-----------------------CCCC---CcCCCcceeEEEEEEEEE---CCEEEEEEE
Confidence 66999999999999999985 2232 112345555444333322 456688899
Q ss_pred Eeccccc
Q psy5032 99 LDTQGTF 105 (193)
Q Consensus 99 lDTEG~~ 105 (193)
.||.|..
T Consensus 54 wDtaGqe 60 (202)
T cd04120 54 WDTAGQE 60 (202)
T ss_pred EeCCCch
Confidence 9999864
No 222
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=95.20 E-value=0.017 Score=47.43 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=23.4
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+.+|+|+|+-.||||+|.|+|..-.+
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fn 33 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFN 33 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhC
Confidence 67899999999999999999998653
No 223
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.20 E-value=0.027 Score=49.11 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++++|+.++|||+||+.|.+.
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999984
No 224
>PRK10218 GTP-binding protein; Provisional
Probab=95.20 E-value=0.23 Score=47.96 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=44.7
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCcc
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKA 94 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~ 94 (193)
.+.-|+|+|...+|||+|+++|+..... +... ..... .-.-....-.++||-+-.+...+. .++.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~----------~~~~-~~~~~-~v~D~~~~E~erGiTi~~~~~~i~---~~~~ 68 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGT----------FDSR-AETQE-RVMDSNDLEKERGITILAKNTAIK---WNDY 68 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCC----------cccc-cccce-eeeccccccccCceEEEEEEEEEe---cCCE
Confidence 4677999999999999999999973110 0000 00000 000001123467777665544332 2346
Q ss_pred EEEEEecccccCc
Q psy5032 95 AVILLDTQGTFDS 107 (193)
Q Consensus 95 ~vlllDTEG~~~~ 107 (193)
.+-++||+|..+.
T Consensus 69 ~inliDTPG~~df 81 (607)
T PRK10218 69 RINIVDTPGHADF 81 (607)
T ss_pred EEEEEECCCcchh
Confidence 7888999987543
No 225
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.19 E-value=0.017 Score=47.19 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+||+.|.+.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999984
No 226
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.18 E-value=0.018 Score=47.61 Aligned_cols=23 Identities=30% Similarity=0.171 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 78999999999999999999964
No 227
>PRK08233 hypothetical protein; Provisional
Probab=95.16 E-value=0.023 Score=44.84 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=23.4
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
..||.|.|+.++|||+|.+.|...+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998763
No 228
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.15 E-value=0.017 Score=47.02 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=21.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+||+.|.+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999984
No 229
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.15 E-value=0.27 Score=48.14 Aligned_cols=27 Identities=19% Similarity=0.055 Sum_probs=23.5
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
....+..|+|+|....|||+|+|.|++
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~ 297 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILG 297 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhC
Confidence 344567899999999999999999996
No 230
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.15 E-value=0.018 Score=47.51 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+.+
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999853
No 231
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.15 E-value=0.017 Score=47.47 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=21.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+||+.|.+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999984
No 232
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.15 E-value=0.019 Score=46.81 Aligned_cols=22 Identities=23% Similarity=0.009 Sum_probs=19.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+|+|+||.++|||+|||.++.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 3689999999999999999873
No 233
>PRK12736 elongation factor Tu; Reviewed
Probab=95.14 E-value=0.14 Score=46.56 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=23.5
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|-.-|+|+|...+|||+|++.|+++.
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~ 36 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVL 36 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhh
Confidence 3455669999999999999999999753
No 234
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.12 E-value=0.018 Score=47.07 Aligned_cols=22 Identities=23% Similarity=0.079 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999985
No 235
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.10 E-value=0.019 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.089 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 236
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.10 E-value=0.018 Score=48.69 Aligned_cols=24 Identities=29% Similarity=0.106 Sum_probs=21.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++|+|+.++|||+||+.|.+..
T Consensus 31 e~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 31 SVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 479999999999999999999853
No 237
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.08 E-value=0.019 Score=46.86 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
No 238
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.08 E-value=0.021 Score=46.87 Aligned_cols=25 Identities=24% Similarity=0.112 Sum_probs=22.8
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+ -+++|+|+.++|||+||+.|.+.+
T Consensus 23 ~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 23 E-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred c-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 5 799999999999999999999853
No 239
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.07 E-value=0.019 Score=47.92 Aligned_cols=23 Identities=26% Similarity=0.148 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 79999999999999999999854
No 240
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.017 Score=47.21 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999853
No 241
>PRK05433 GTP-binding protein LepA; Provisional
Probab=95.05 E-value=0.15 Score=49.03 Aligned_cols=25 Identities=32% Similarity=0.239 Sum_probs=21.8
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
++-=|+|+|....|||+|+++|+..
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~ 30 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIEL 30 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4556889999999999999999974
No 242
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.05 E-value=0.019 Score=47.05 Aligned_cols=23 Identities=26% Similarity=0.072 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 78999999999999999999853
No 243
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=95.04 E-value=0.073 Score=42.56 Aligned_cols=21 Identities=24% Similarity=0.033 Sum_probs=19.0
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-|.|+|+.++|||+|+|.+..
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~ 23 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTL 23 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999984
No 244
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.04 E-value=0.02 Score=46.71 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++|+|+.++|||+||+.|.+..
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 478999999999999999999853
No 245
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=95.04 E-value=0.064 Score=50.02 Aligned_cols=26 Identities=27% Similarity=0.103 Sum_probs=21.8
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
++.+. |.|+|+...|||+|||.|++.
T Consensus 215 r~G~k-vvIiG~PNvGKSSLLNaL~~~ 240 (454)
T COG0486 215 REGLK-VVIIGRPNVGKSSLLNALLGR 240 (454)
T ss_pred hcCce-EEEECCCCCcHHHHHHHHhcC
Confidence 33455 679999999999999999984
No 246
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.03 E-value=0.02 Score=47.34 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999999854
No 247
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.02 E-value=0.021 Score=41.98 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=20.3
Q ss_pred EEeeCCCCCChHHHHHHHHhhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l 40 (193)
|.|.|++++|||++++.|...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999874
No 248
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.01 E-value=0.074 Score=42.68 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=18.7
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|..+.|||.|++++..
T Consensus 4 iv~vG~~~vGKTsli~~~~~ 23 (178)
T cd04131 4 IVVVGDVQCGKTALLQVFAK 23 (178)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 77899999999999999986
No 249
>KOG2485|consensus
Probab=95.01 E-value=0.063 Score=48.04 Aligned_cols=83 Identities=19% Similarity=0.115 Sum_probs=46.8
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccce-EEEeeccceecCCCCCccEEE
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTG-ILMWSHVYIATLPTGEKAAVI 97 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~G-Iwmw~~p~~~~~~~g~~~~vl 97 (193)
|=|+|-...|||.|+|.+......+..+.+ .| -.+|+-+.+.+ |=+... -.|.
T Consensus 146 vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~-------------vG--~~pGVT~~V~~~iri~~r-----------p~vy 199 (335)
T KOG2485|consen 146 VMVVGVPNVGKSSLINALRNVHLRKKKAAR-------------VG--AEPGVTRRVSERIRISHR-----------PPVY 199 (335)
T ss_pred EEEEcCCCCChHHHHHHHHHHHhhhcccee-------------cc--CCCCceeeehhheEeccC-----------CceE
Confidence 568899999999999999886543211000 00 01122333333 222222 2399
Q ss_pred EEecccccCccccccchhHHHHHHHhhhce
Q psy5032 98 LLDTQGTFDSESTVRDCATVFALSTMLSSI 127 (193)
Q Consensus 98 llDTEG~~~~~~~~~~d~~if~L~~LLSS~ 127 (193)
++||+|...+.-...++..=.||.-+.++.
T Consensus 200 ~iDTPGil~P~I~~~e~~lKLAL~g~Vkd~ 229 (335)
T KOG2485|consen 200 LIDTPGILVPSIVDVEDGLKLALCGLVKDH 229 (335)
T ss_pred EecCCCcCCCCCCCHHHhhhhhhccccccc
Confidence 999999998854444444445555444443
No 250
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.01 E-value=0.02 Score=47.63 Aligned_cols=23 Identities=26% Similarity=0.099 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999853
No 251
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.99 E-value=0.02 Score=47.11 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999854
No 252
>COG1160 Predicted GTPases [General function prediction only]
Probab=94.99 E-value=0.12 Score=48.08 Aligned_cols=24 Identities=25% Similarity=0.110 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
..-|+|+|..-.|||+|+|.|++.
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilge 201 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGE 201 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccC
Confidence 456899999999999999999983
No 253
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.99 E-value=0.019 Score=47.00 Aligned_cols=23 Identities=26% Similarity=0.164 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 78999999999999999999853
No 254
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=94.98 E-value=0.019 Score=43.35 Aligned_cols=20 Identities=20% Similarity=-0.007 Sum_probs=18.7
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|..++|||.|+|+|.+
T Consensus 3 v~liG~~~vGKSsL~~~l~~ 22 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQG 22 (142)
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 67999999999999999986
No 255
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.97 E-value=0.021 Score=46.55 Aligned_cols=23 Identities=22% Similarity=-0.003 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++++|+.++|||+||+.|.+.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999853
No 256
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.97 E-value=0.039 Score=49.98 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-++++.||.++|||+||..+.+.
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999973
No 257
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=94.96 E-value=0.077 Score=42.16 Aligned_cols=20 Identities=20% Similarity=-0.054 Sum_probs=18.3
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|..++|||.|+.++..
T Consensus 4 i~iiG~~~vGKSsli~~~~~ 23 (174)
T cd01871 4 CVVVGDGAVGKTCLLISYTT 23 (174)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67999999999999998885
No 258
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.96 E-value=0.024 Score=46.52 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.4
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+|-|+||.++|||++++.|++++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3688999999999999999998764
No 259
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.95 E-value=0.022 Score=45.11 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=20.9
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++++|+.++|||+||+.|.+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999984
No 260
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.021 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.082 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999999854
No 261
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.94 E-value=0.022 Score=47.68 Aligned_cols=24 Identities=25% Similarity=0.026 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999853
No 262
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.94 E-value=0.02 Score=46.59 Aligned_cols=23 Identities=13% Similarity=-0.002 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+||+.|.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 47899999999999999999984
No 263
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.94 E-value=0.036 Score=45.58 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=27.5
Q ss_pred hcCCCCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 9 HRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 9 ~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
...-++-+.+|+++|..++|||+|++.++..+.
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 334455699999999999999999999998643
No 264
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=94.94 E-value=0.21 Score=42.61 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=18.8
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|..++|||+|+|+++.
T Consensus 3 VvvlG~~gvGKTSLi~r~~~ 22 (247)
T cd04143 3 MVVLGASKVGKTAIVSRFLG 22 (247)
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 78999999999999999986
No 265
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.94 E-value=0.022 Score=46.96 Aligned_cols=23 Identities=22% Similarity=0.036 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999853
No 266
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.94 E-value=0.022 Score=46.18 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+||+.|.+.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999984
No 267
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.93 E-value=0.023 Score=47.83 Aligned_cols=22 Identities=27% Similarity=0.143 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7999999999999999999984
No 268
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.92 E-value=0.022 Score=46.41 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=21.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+++|+|+.++|||+||+.|.+.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999984
No 269
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.91 E-value=0.054 Score=43.87 Aligned_cols=23 Identities=26% Similarity=0.044 Sum_probs=20.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.=|.|+|+.++|||+|+|+|.+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 45789999999999999999984
No 270
>PLN03126 Elongation factor Tu; Provisional
Probab=94.91 E-value=0.31 Score=45.76 Aligned_cols=28 Identities=14% Similarity=0.031 Sum_probs=25.1
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
..+|..-|+++|....|||+|+|+|+..
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~ 104 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMA 104 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678888999999999999999999964
No 271
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.91 E-value=0.023 Score=46.54 Aligned_cols=23 Identities=17% Similarity=0.023 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 272
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.90 E-value=0.022 Score=47.22 Aligned_cols=23 Identities=17% Similarity=-0.022 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999854
No 273
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=94.88 E-value=0.052 Score=43.50 Aligned_cols=20 Identities=20% Similarity=-0.087 Sum_probs=18.1
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||.|++++..
T Consensus 20 v~lvG~~~vGKTsli~~~~~ 39 (182)
T PTZ00133 20 ILMVGLDAAGKTTILYKLKL 39 (182)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 67889999999999999974
No 274
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.88 E-value=0.021 Score=47.39 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC
Confidence 379999999999999999999853
No 275
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.88 E-value=0.023 Score=47.06 Aligned_cols=24 Identities=8% Similarity=0.022 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++|+|+.++|||+||+.|.+.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999853
No 276
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.88 E-value=0.023 Score=44.29 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=20.9
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+++|+|+.++|||+|++.|.+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 47899999999999999999984
No 277
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.87 E-value=0.022 Score=47.38 Aligned_cols=22 Identities=18% Similarity=0.021 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
No 278
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.87 E-value=0.032 Score=49.23 Aligned_cols=30 Identities=20% Similarity=0.027 Sum_probs=26.7
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
..++.+|.|+|+.++|||+||+.+++.+..
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 357999999999999999999999997653
No 279
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.86 E-value=0.023 Score=48.34 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=21.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999854
No 280
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.85 E-value=0.024 Score=46.88 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=21.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+||+.|.+.
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 38999999999999999999985
No 281
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.84 E-value=0.023 Score=47.27 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+..
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999954
No 282
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.84 E-value=0.025 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=21.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+|++.|.+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999984
No 283
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=94.84 E-value=0.023 Score=47.67 Aligned_cols=22 Identities=27% Similarity=0.163 Sum_probs=20.6
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6999999999999999999974
No 284
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.83 E-value=0.024 Score=47.62 Aligned_cols=23 Identities=22% Similarity=0.073 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 69999999999999999999853
No 285
>PRK07560 elongation factor EF-2; Reviewed
Probab=94.82 E-value=0.15 Score=50.14 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=29.7
Q ss_pred cHHHHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 2 AEYVKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 2 ~e~~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-|....+....+ ++.-|+|+|...+|||+|.+.|+.+
T Consensus 7 ~~~~~~~~~~~~-~iRni~iigh~d~GKTTL~e~ll~~ 43 (731)
T PRK07560 7 VEKILELMKNPE-QIRNIGIIAHIDHGKTTLSDNLLAG 43 (731)
T ss_pred HHHHHHHhhchh-cccEEEEEEeCCCCHHHHHHHHHHH
Confidence 455556666644 6888999999999999999999974
No 286
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=94.80 E-value=0.13 Score=47.68 Aligned_cols=25 Identities=20% Similarity=-0.032 Sum_probs=22.5
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-++-|+++|...+|||+|||.|.+.
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~a 181 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNA 181 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcC
Confidence 3678999999999999999999973
No 287
>PRK00049 elongation factor Tu; Reviewed
Probab=94.80 E-value=0.17 Score=46.03 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=22.8
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+|..-|+|+|...+|||+|++.|++.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~ 35 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKV 35 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHh
Confidence 45566999999999999999999974
No 288
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.80 E-value=0.024 Score=47.22 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.9
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++|+|+.++|||+||+.|.+.+
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhccC
Confidence 479999999999999999999954
No 289
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.80 E-value=0.025 Score=47.53 Aligned_cols=23 Identities=26% Similarity=0.134 Sum_probs=21.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+|++.|.+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47999999999999999999984
No 290
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.79 E-value=0.026 Score=45.99 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=21.0
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+||+.|.+.
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999984
No 291
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.79 E-value=0.026 Score=46.16 Aligned_cols=23 Identities=13% Similarity=-0.078 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999853
No 292
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.79 E-value=0.026 Score=44.98 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=20.6
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 293
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=94.78 E-value=0.1 Score=42.52 Aligned_cols=60 Identities=20% Similarity=0.079 Sum_probs=38.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEE
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAV 96 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~v 96 (193)
.=|.++|..+.|||.|++++... .|. .....|.|+-.....+.+ +++.+.+
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~-----------------------~~~---~~~~~t~~~~~~~~~i~~---~~~~~~l 57 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDG-----------------------STE---SPYGYNMGIDYKTTTILL---DGRRVKL 57 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC-----------------------CCC---CCCCCcceeEEEEEEEEE---CCEEEEE
Confidence 44669999999999999998851 121 111234455433333322 4567889
Q ss_pred EEEeccccc
Q psy5032 97 ILLDTQGTF 105 (193)
Q Consensus 97 lllDTEG~~ 105 (193)
-+.||.|..
T Consensus 58 ~iwDt~G~~ 66 (189)
T cd04121 58 QLWDTSGQG 66 (189)
T ss_pred EEEeCCCcH
Confidence 999999864
No 294
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.78 E-value=0.022 Score=48.78 Aligned_cols=28 Identities=21% Similarity=0.018 Sum_probs=24.8
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
|=-|++|+||.++|||+||..|.+++..
T Consensus 26 pGev~ailGPNGAGKSTlLk~LsGel~p 53 (259)
T COG4559 26 PGEVLAILGPNGAGKSTLLKALSGELSP 53 (259)
T ss_pred CCcEEEEECCCCccHHHHHHHhhCccCC
Confidence 4468999999999999999999998763
No 295
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.78 E-value=0.026 Score=46.39 Aligned_cols=22 Identities=32% Similarity=0.280 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999985
No 296
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.77 E-value=0.031 Score=44.53 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=22.0
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
||+|+|+.++|||+|++.|...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999764
No 297
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.76 E-value=0.026 Score=45.73 Aligned_cols=22 Identities=32% Similarity=0.173 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+|++.|.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999984
No 298
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.74 E-value=0.026 Score=46.26 Aligned_cols=23 Identities=17% Similarity=0.084 Sum_probs=21.0
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+||+.|.+.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999984
No 299
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.74 E-value=0.029 Score=43.93 Aligned_cols=25 Identities=16% Similarity=0.103 Sum_probs=23.0
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
||.|+|+..+|||+|+..|.+++..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~ 26 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKR 26 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhH
Confidence 7999999999999999999998753
No 300
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.72 E-value=0.03 Score=44.64 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=20.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999984
No 301
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.71 E-value=0.028 Score=47.31 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=20.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-+++|+|+.++|||+||+.|.+
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 30 SVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4689999999999999999987
No 302
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.71 E-value=0.027 Score=47.33 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++|+|+.++|||+||+.|.+..
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 30 TITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 379999999999999999999853
No 303
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.71 E-value=0.027 Score=46.98 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999999854
No 304
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.71 E-value=0.043 Score=49.19 Aligned_cols=36 Identities=14% Similarity=-0.061 Sum_probs=28.9
Q ss_pred HHhcCCCCCceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 7 VTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 7 ~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
..+....++-.||.|.|+.++|||+|++.|..++..
T Consensus 47 ~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 47 DALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred HHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 333333567789999999999999999999988764
No 305
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.71 E-value=0.028 Score=46.22 Aligned_cols=24 Identities=33% Similarity=0.239 Sum_probs=21.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++|+|+.++|||+||+.|.+..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999999999853
No 306
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.71 E-value=0.027 Score=47.09 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 307
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.71 E-value=0.027 Score=46.74 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++|+|+.++|||+||+.|.+..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 478999999999999999999853
No 308
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.68 E-value=0.029 Score=44.91 Aligned_cols=23 Identities=22% Similarity=0.095 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+||+.|.+.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999984
No 309
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.67 E-value=0.028 Score=46.60 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++|+|+.++|||+||+.|.+.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 379999999999999999999853
No 310
>PLN03127 Elongation factor Tu; Provisional
Probab=94.66 E-value=0.3 Score=45.40 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=23.6
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|..-|+++|....|||+|+|.|.++.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~ 85 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVL 85 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHH
Confidence 3455669999999999999999998754
No 311
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.65 E-value=0.036 Score=43.88 Aligned_cols=25 Identities=8% Similarity=-0.144 Sum_probs=22.2
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
++.+|.|+|+.++|||++++.|...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999854
No 312
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.65 E-value=0.069 Score=46.20 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=21.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+|++.|+++
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Confidence 36899999999999999999985
No 313
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.65 E-value=0.028 Score=47.16 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 314
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.64 E-value=0.029 Score=46.97 Aligned_cols=23 Identities=13% Similarity=0.067 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999853
No 315
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.63 E-value=0.029 Score=47.05 Aligned_cols=23 Identities=17% Similarity=0.017 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999853
No 316
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=94.63 E-value=0.066 Score=41.70 Aligned_cols=20 Identities=20% Similarity=-0.087 Sum_probs=18.1
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|..++|||+|++++..
T Consensus 3 v~~~G~~~~GKTsli~~l~~ 22 (159)
T cd04150 3 ILMVGLDAAGKTTILYKLKL 22 (159)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67889999999999999974
No 317
>PTZ00369 Ras-like protein; Provisional
Probab=94.63 E-value=0.093 Score=42.02 Aligned_cols=20 Identities=20% Similarity=-0.036 Sum_probs=18.3
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|..++|||+|++++..
T Consensus 8 i~iiG~~~~GKTsLi~~~~~ 27 (189)
T PTZ00369 8 LVVVGGGGVGKSALTIQFIQ 27 (189)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 56889999999999999986
No 318
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=94.62 E-value=0.029 Score=47.62 Aligned_cols=24 Identities=25% Similarity=0.097 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+.+
T Consensus 40 e~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 40 QVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 478999999999999999999853
No 319
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.62 E-value=0.03 Score=47.70 Aligned_cols=22 Identities=23% Similarity=0.095 Sum_probs=20.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 49 VTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999984
No 320
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.62 E-value=0.029 Score=46.46 Aligned_cols=24 Identities=21% Similarity=0.063 Sum_probs=21.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++++|+.++|||+|++.|++..
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999853
No 321
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.61 E-value=0.03 Score=46.50 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999853
No 322
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.61 E-value=0.029 Score=48.06 Aligned_cols=24 Identities=21% Similarity=0.045 Sum_probs=22.0
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+++|+|+.++|||+||+.|.+...
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~~ 51 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 799999999999999999999643
No 323
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.61 E-value=0.03 Score=46.23 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999853
No 324
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.60 E-value=0.024 Score=44.49 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=17.7
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|.|.|..+||||+|++.|..+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999985
No 325
>KOG1191|consensus
Probab=94.59 E-value=0.32 Score=45.99 Aligned_cols=24 Identities=29% Similarity=0.131 Sum_probs=20.9
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.++. |+|+|+...|||.|||.|.+
T Consensus 267 ~gl~-iaIvGrPNvGKSSLlNaL~~ 290 (531)
T KOG1191|consen 267 SGLQ-IAIVGRPNVGKSSLLNALSR 290 (531)
T ss_pred cCCe-EEEEcCCCCCHHHHHHHHhc
Confidence 3444 78999999999999999997
No 326
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.59 E-value=0.032 Score=47.00 Aligned_cols=24 Identities=25% Similarity=0.097 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 31 KITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 368999999999999999999853
No 327
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=94.57 E-value=0.27 Score=44.56 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=23.9
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|..-|+|+|...+|||+|++.|++.+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~ 36 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVL 36 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhH
Confidence 3566779999999999999999998653
No 328
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.57 E-value=0.031 Score=45.81 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+|++.|.+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999985
No 329
>PRK10908 cell division protein FtsE; Provisional
Probab=94.57 E-value=0.031 Score=46.12 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=21.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+|++.|.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999853
No 330
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.56 E-value=0.03 Score=47.09 Aligned_cols=24 Identities=25% Similarity=0.119 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+.+
T Consensus 31 e~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 31 GVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999999853
No 331
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.56 E-value=0.029 Score=48.01 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999854
No 332
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=94.56 E-value=0.094 Score=41.53 Aligned_cols=22 Identities=18% Similarity=-0.059 Sum_probs=19.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.-|.++|+.++|||.|++++..
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~ 35 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKL 35 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 3478999999999999999974
No 333
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.55 E-value=0.029 Score=43.51 Aligned_cols=22 Identities=32% Similarity=0.114 Sum_probs=19.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+|.|+||.++|||+|++.|.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3678999999999999999974
No 334
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.55 E-value=0.032 Score=45.56 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=21.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+|++.|.+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999985
No 335
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.55 E-value=0.037 Score=44.00 Aligned_cols=23 Identities=22% Similarity=0.132 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|.|+|+.++|||+|++.|...+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68899999999999999998864
No 336
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.55 E-value=0.031 Score=47.11 Aligned_cols=23 Identities=26% Similarity=0.079 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 78999999999999999999853
No 337
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.55 E-value=0.031 Score=47.14 Aligned_cols=22 Identities=27% Similarity=0.143 Sum_probs=20.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 34 VTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7999999999999999999984
No 338
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=94.54 E-value=0.031 Score=46.92 Aligned_cols=23 Identities=30% Similarity=0.105 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 79999999999999999999854
No 339
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.54 E-value=0.033 Score=47.16 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999999853
No 340
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=94.53 E-value=0.11 Score=41.39 Aligned_cols=20 Identities=20% Similarity=-0.054 Sum_probs=18.6
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|..++|||.|++++..
T Consensus 4 i~vvG~~~vGKTsl~~~~~~ 23 (175)
T cd01874 4 CVVVGDGAVGKTCLLISYTT 23 (175)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 77999999999999999985
No 341
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.53 E-value=0.033 Score=44.28 Aligned_cols=23 Identities=22% Similarity=0.081 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|++.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999853
No 342
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=94.52 E-value=0.18 Score=50.33 Aligned_cols=37 Identities=27% Similarity=0.196 Sum_probs=30.6
Q ss_pred cHHHHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 2 AEYVKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 2 ~e~~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.|+...+++. ..+|.=|+|+|.-.+|||+|++.|+..
T Consensus 6 ~~~~~~~~~~-~~~Irni~iiGhvd~GKTTL~~~Ll~~ 42 (843)
T PLN00116 6 AEELRRIMDK-KHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
T ss_pred HHHHHHHhhC-ccCccEEEEEcCCCCCHHHHHHHHHHh
Confidence 3566666666 457888999999999999999999974
No 343
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.50 E-value=0.038 Score=39.80 Aligned_cols=23 Identities=22% Similarity=0.030 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+-++|+.++|||+++..+...+
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 4 VILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhcc
Confidence 57899999999999999999864
No 344
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=94.49 E-value=0.15 Score=44.62 Aligned_cols=21 Identities=24% Similarity=0.099 Sum_probs=19.2
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|+++|...+|||+|+|.|.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~ 21 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKA 21 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCC
Confidence 579999999999999999973
No 345
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=94.49 E-value=0.034 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.106 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++|+|+.++|||+||+.|.+..
T Consensus 46 e~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 46 TVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999999853
No 346
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.48 E-value=0.033 Score=44.77 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=20.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 347
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.48 E-value=0.03 Score=45.88 Aligned_cols=24 Identities=21% Similarity=-0.049 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++|+|+.++|||+||+.|.+..
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccC
Confidence 479999999999999999999853
No 348
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.47 E-value=0.033 Score=46.77 Aligned_cols=22 Identities=27% Similarity=0.122 Sum_probs=20.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999984
No 349
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.47 E-value=0.032 Score=47.18 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999854
No 350
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.46 E-value=0.035 Score=46.79 Aligned_cols=22 Identities=23% Similarity=0.093 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 32 VTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999985
No 351
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=94.46 E-value=0.033 Score=46.12 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=21.9
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++++|+.++|||+||+.|.+.+
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 34 QVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred eEEEEECCCCCCHHHHHHHHhCcc
Confidence 479999999999999999999864
No 352
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.45 E-value=0.034 Score=46.41 Aligned_cols=24 Identities=25% Similarity=0.077 Sum_probs=21.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+|++.|.+.+
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 353
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.45 E-value=0.034 Score=45.42 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++|+|+.++|||+||+.|.+.+
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999853
No 354
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.45 E-value=0.061 Score=47.36 Aligned_cols=27 Identities=19% Similarity=0.022 Sum_probs=22.9
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.-.||+|+|+.++|||+|++.|.+.+.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 347999999999999999998876553
No 355
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=94.45 E-value=0.27 Score=43.80 Aligned_cols=20 Identities=15% Similarity=-0.027 Sum_probs=18.8
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|+++|...+|||+|+|+|.+
T Consensus 1 i~ivG~pnvGKStLfn~lt~ 20 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATL 20 (318)
T ss_pred CEEECCCCCCHHHHHHHHhC
Confidence 57899999999999999997
No 356
>PF13173 AAA_14: AAA domain
Probab=94.44 E-value=0.043 Score=41.63 Aligned_cols=23 Identities=22% Similarity=0.088 Sum_probs=20.6
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
++-|.|+-|+|||+|+.++...+
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999754
No 357
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.42 E-value=0.034 Score=46.08 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=22.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-+++++|+.++|||+||+.|.+.+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999998643
No 358
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=94.41 E-value=0.31 Score=46.98 Aligned_cols=23 Identities=26% Similarity=0.154 Sum_probs=20.9
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+|+|+|....|||+|+|+|.+.
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~ 27 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGS 27 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 37999999999999999999973
No 359
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.41 E-value=0.034 Score=47.11 Aligned_cols=22 Identities=23% Similarity=0.125 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999985
No 360
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.40 E-value=0.035 Score=46.37 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++++|+.++|||+||+.|.+.+
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999953
No 361
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.40 E-value=0.033 Score=47.76 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=21.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++|+|+.++|||+||+.|.+.+
T Consensus 34 e~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 34 SYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999854
No 362
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.39 E-value=0.039 Score=44.74 Aligned_cols=26 Identities=23% Similarity=0.049 Sum_probs=22.8
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
|=.+|.|+|+.++|||+|++.|.+.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44578999999999999999999864
No 363
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.39 E-value=0.036 Score=46.56 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 32 VNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999999853
No 364
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.38 E-value=0.038 Score=46.40 Aligned_cols=23 Identities=30% Similarity=0.134 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 31 VTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 79999999999999999999853
No 365
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.38 E-value=0.036 Score=45.71 Aligned_cols=22 Identities=27% Similarity=0.114 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
No 366
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.37 E-value=0.035 Score=47.40 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+|++.|.+.+
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999854
No 367
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.37 E-value=0.037 Score=46.49 Aligned_cols=24 Identities=25% Similarity=0.098 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 31 ELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 368999999999999999999853
No 368
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=94.37 E-value=0.23 Score=45.31 Aligned_cols=27 Identities=22% Similarity=0.113 Sum_probs=23.3
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
++|..-|+|+|...+|||+|+|+|+..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~ 29 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYE 29 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHH
Confidence 345666999999999999999999964
No 369
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.36 E-value=0.049 Score=44.52 Aligned_cols=27 Identities=19% Similarity=0.004 Sum_probs=23.5
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
...|++|+|+.++|||+|++.|...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 345899999999999999999998653
No 370
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.36 E-value=0.033 Score=47.49 Aligned_cols=23 Identities=30% Similarity=0.160 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+|++.|.+..
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 78999999999999999999853
No 371
>COG4240 Predicted kinase [General function prediction only]
Probab=94.36 E-value=0.038 Score=47.88 Aligned_cols=30 Identities=17% Similarity=0.082 Sum_probs=25.2
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhhhcc
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMNFTY 44 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~ 44 (193)
.=-||+|+||++||||||.-.|-+.|..++
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg 78 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKG 78 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHHhc
Confidence 346799999999999999998888776654
No 372
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.36 E-value=0.037 Score=44.91 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=21.0
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++++|+.++|||+||+.|.+.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999973
No 373
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.35 E-value=0.034 Score=48.80 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=22.0
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+|+|+|+.++|||+||+.|.+.+.
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~~ 58 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALLL 58 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 799999999999999999999653
No 374
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.35 E-value=0.035 Score=47.97 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=21.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+.+
T Consensus 38 e~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 38 KVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999854
No 375
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.35 E-value=0.039 Score=43.73 Aligned_cols=23 Identities=26% Similarity=0.049 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|.++||.++|||+|++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 68899999999999999999853
No 376
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.34 E-value=0.039 Score=44.27 Aligned_cols=23 Identities=26% Similarity=0.083 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+|++.|.+.
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999984
No 377
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.33 E-value=0.037 Score=45.17 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+|++.|.+.+
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999853
No 378
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.32 E-value=0.037 Score=47.40 Aligned_cols=24 Identities=25% Similarity=0.128 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+.+
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999854
No 379
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.31 E-value=0.036 Score=46.63 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+|++.|.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 32 EIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCc
Confidence 478999999999999999999854
No 380
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.30 E-value=0.037 Score=47.33 Aligned_cols=23 Identities=26% Similarity=0.067 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
No 381
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.30 E-value=0.038 Score=47.04 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+.+
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
No 382
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.29 E-value=0.038 Score=45.13 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=21.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+|++.|.+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999984
No 383
>PRK01889 GTPase RsgA; Reviewed
Probab=94.29 E-value=0.04 Score=49.56 Aligned_cols=24 Identities=25% Similarity=0.113 Sum_probs=21.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
..+.++|+.++|||+|+|.|++..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 478999999999999999999853
No 384
>COG2262 HflX GTPases [General function prediction only]
Probab=94.29 E-value=0.11 Score=47.78 Aligned_cols=71 Identities=23% Similarity=0.158 Sum_probs=48.3
Q ss_pred HHhcCCCCCceEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeecccee
Q psy5032 7 VTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIA 86 (193)
Q Consensus 7 ~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~ 86 (193)
..-++....+-.||++|=...|||+|+|.|.+.-. + ....=|. +.++.|+=|-++
T Consensus 183 ~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~------------~----~~d~LFA---TLdpttR~~~l~------ 237 (411)
T COG2262 183 RRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADV------------Y----VADQLFA---TLDPTTRRIELG------ 237 (411)
T ss_pred HhhhhcccCCCeEEEEeeccccHHHHHHHHhccCe------------e----ccccccc---cccCceeEEEeC------
Confidence 33445566899999999999999999999986210 0 0113344 567788777554
Q ss_pred cCCCCCccEEEEEecccccCc
Q psy5032 87 TLPTGEKAAVILLDTQGTFDS 107 (193)
Q Consensus 87 ~~~~g~~~~vlllDTEG~~~~ 107 (193)
+|. .++|=||-||-+.
T Consensus 238 ---~g~--~vlLtDTVGFI~~ 253 (411)
T COG2262 238 ---DGR--KVLLTDTVGFIRD 253 (411)
T ss_pred ---CCc--eEEEecCccCccc
Confidence 333 3788888888653
No 385
>PRK06547 hypothetical protein; Provisional
Probab=94.29 E-value=0.077 Score=42.96 Aligned_cols=36 Identities=11% Similarity=-0.055 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 3 EYVKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 3 e~~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
|.|...+. ..+.-+|.|.|+.++|||+|.+.|...+
T Consensus 4 ~~~~~~~~--~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 4 ALIAARLC--GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHHhh--cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44555544 3567789999999999999999998753
No 386
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.29 E-value=0.037 Score=47.03 Aligned_cols=23 Identities=26% Similarity=0.072 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999954
No 387
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.29 E-value=0.038 Score=46.45 Aligned_cols=22 Identities=27% Similarity=0.086 Sum_probs=20.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 33 ITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7999999999999999999984
No 388
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=94.29 E-value=0.037 Score=46.74 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999999853
No 389
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.28 E-value=0.038 Score=45.94 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 79999999999999999999854
No 390
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=94.27 E-value=0.059 Score=50.21 Aligned_cols=26 Identities=15% Similarity=-0.109 Sum_probs=23.0
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+-.||+|+|++++|||+|++.|.+.+
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44799999999999999999997765
No 391
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.27 E-value=0.038 Score=46.97 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=21.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+.+
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999864
No 392
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=94.27 E-value=0.038 Score=47.23 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 393
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.26 E-value=0.038 Score=47.30 Aligned_cols=22 Identities=27% Similarity=0.110 Sum_probs=20.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 41 ~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 41 VTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999985
No 394
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.25 E-value=0.038 Score=47.27 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999854
No 395
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.25 E-value=0.04 Score=46.39 Aligned_cols=23 Identities=30% Similarity=0.108 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 32 ITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999853
No 396
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.24 E-value=0.04 Score=46.01 Aligned_cols=24 Identities=21% Similarity=0.068 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++++|+.++|||+||+.|.+.+
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999854
No 397
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.24 E-value=0.04 Score=45.20 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++|+|+.++|||+|++.|++.+
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999853
No 398
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.23 E-value=0.028 Score=45.29 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=26.6
Q ss_pred HHHHhcCCCC-CceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 5 VKVTHRRPSD-NDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 5 ~~~~~~~~~~-~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
...+.+..+. +-..+.|.||-|+|||+||+.+...+
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 3334444333 46678899999999999999999976
No 399
>KOG0410|consensus
Probab=94.21 E-value=0.068 Score=48.34 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=57.2
Q ss_pred hcCCCCCceEEEeeCCCCCChHHHHHHHHhh-hhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceec
Q psy5032 9 HRRPSDNDSKNSEKSAFRKGKSFLLDFLLRY-MNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIAT 87 (193)
Q Consensus 9 ~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~-l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~ 87 (193)
.++-..+..||||+|=..+|||+|+|+|-.. ++++ .+=|. +.++.++-. +
T Consensus 171 ~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~-----------------drLFA---TLDpT~h~a---------~ 221 (410)
T KOG0410|consen 171 VGREGESSPVIAVVGYTNAGKSTLIKALTKAALYPN-----------------DRLFA---TLDPTLHSA---------H 221 (410)
T ss_pred hccccCCCceEEEEeecCccHHHHHHHHHhhhcCcc-----------------chhhe---eccchhhhc---------c
Confidence 3445678999999999999999999999964 1111 12343 234443322 3
Q ss_pred CCCCCccEEEEEecccccCccccccchhHHHHHHHh----hhceEEEeCcc
Q psy5032 88 LPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTM----LSSIQIYNLSQ 134 (193)
Q Consensus 88 ~~~g~~~~vlllDTEG~~~~~~~~~~d~~if~L~~L----LSS~~IyN~~~ 134 (193)
.|+|.. +++-||=||.+.=- -..|.|+.+- -+|-+|..+..
T Consensus 222 Lpsg~~--vlltDTvGFisdLP----~~LvaAF~ATLeeVaeadlllHvvD 266 (410)
T KOG0410|consen 222 LPSGNF--VLLTDTVGFISDLP----IQLVAAFQATLEEVAEADLLLHVVD 266 (410)
T ss_pred CCCCcE--EEEeechhhhhhCc----HHHHHHHHHHHHHHhhcceEEEEee
Confidence 467755 99999999985321 1234444333 35556666654
No 400
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=94.20 E-value=0.039 Score=46.98 Aligned_cols=23 Identities=26% Similarity=0.088 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+..
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999854
No 401
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.20 E-value=0.037 Score=46.28 Aligned_cols=23 Identities=22% Similarity=0.040 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+++|+|+.++|||+||+.|.+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 37899999999999999999985
No 402
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=94.20 E-value=0.043 Score=46.87 Aligned_cols=24 Identities=25% Similarity=0.081 Sum_probs=21.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+..
T Consensus 47 e~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 47 KITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 378999999999999999999853
No 403
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=94.19 E-value=0.037 Score=46.45 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=21.0
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+||+.|.+.
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 34 EIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHcCC
Confidence 37899999999999999999984
No 404
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.19 E-value=0.044 Score=43.82 Aligned_cols=22 Identities=32% Similarity=0.188 Sum_probs=20.6
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
++.|+|+.++|||+||+.|.+.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999984
No 405
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.19 E-value=0.04 Score=45.82 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.4
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++++|+.++|||+||+.|.+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999853
No 406
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=94.18 E-value=0.33 Score=48.21 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=19.7
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.|+++|...+|||+|.|+|.+
T Consensus 5 ~IaLvG~pNvGKSTLfN~Ltg 25 (772)
T PRK09554 5 TIGLIGNPNSGKTTLFNQLTG 25 (772)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999999987
No 407
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=94.18 E-value=0.04 Score=47.12 Aligned_cols=23 Identities=17% Similarity=0.106 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 408
>PLN02796 D-glycerate 3-kinase
Probab=94.18 E-value=0.052 Score=49.05 Aligned_cols=27 Identities=19% Similarity=0.028 Sum_probs=24.1
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+-.+|+|+|++++|||+|++.|.+.+.
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 457899999999999999999998764
No 409
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=94.17 E-value=0.041 Score=46.35 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 410
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.17 E-value=0.041 Score=47.30 Aligned_cols=24 Identities=21% Similarity=-0.022 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++|+|+.++|||+||+.|.+.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (274)
T PRK13644 29 EYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999853
No 411
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.17 E-value=0.038 Score=47.21 Aligned_cols=23 Identities=26% Similarity=0.060 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 79999999999999999999854
No 412
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=94.17 E-value=0.04 Score=46.70 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 79999999999999999999853
No 413
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=94.17 E-value=0.36 Score=47.00 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=23.2
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+|.-|+|+|....|||+|.|.|+..
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~ 33 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFY 33 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHh
Confidence 45778999999999999999999964
No 414
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.17 E-value=0.045 Score=49.47 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=24.0
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+=.+|.|+||.++|||++|+.|++++.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 447899999999999999999999864
No 415
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=94.16 E-value=0.044 Score=46.99 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=21.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++|+|+.++|||+||+.|.+.+
T Consensus 51 e~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 51 EVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 379999999999999999999954
No 416
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.16 E-value=0.041 Score=47.58 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=21.9
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++|+|+.++|||+||+.|.+.+
T Consensus 34 e~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 34 KYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999864
No 417
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.15 E-value=0.045 Score=46.07 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+|++.|.+.
T Consensus 33 ~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 33 VTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7899999999999999999985
No 418
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.15 E-value=0.039 Score=45.98 Aligned_cols=23 Identities=26% Similarity=0.030 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 78999999999999999999853
No 419
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=94.14 E-value=0.042 Score=46.22 Aligned_cols=23 Identities=26% Similarity=0.117 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 420
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=94.14 E-value=0.37 Score=39.37 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=19.9
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-|+|+|...+|||+|+..|.+.
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999764
No 421
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.14 E-value=0.088 Score=47.45 Aligned_cols=22 Identities=23% Similarity=0.039 Sum_probs=20.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
++.++||.++|||+||+.+.+-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999983
No 422
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.14 E-value=0.066 Score=41.91 Aligned_cols=31 Identities=23% Similarity=0.112 Sum_probs=20.6
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
....-.++-|.|+.++|||+|++.++.++..
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445588999999999999999999987654
No 423
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.12 E-value=0.048 Score=41.23 Aligned_cols=23 Identities=22% Similarity=0.004 Sum_probs=20.5
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
||-++|+.++|||++...|...+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 67899999999999999999653
No 424
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.12 E-value=0.043 Score=45.22 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=20.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+|++.|.+.
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 425
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.11 E-value=0.042 Score=45.69 Aligned_cols=24 Identities=25% Similarity=0.159 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+|++.|.+..
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999853
No 426
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.11 E-value=0.045 Score=45.17 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 42 ~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 78999999999999999999853
No 427
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.11 E-value=0.045 Score=45.03 Aligned_cols=24 Identities=29% Similarity=0.108 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+..
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 28 QLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 479999999999999999999853
No 428
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.10 E-value=0.042 Score=47.37 Aligned_cols=23 Identities=22% Similarity=0.068 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~ 57 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLL 57 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 78999999999999999999864
No 429
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=94.10 E-value=0.35 Score=45.19 Aligned_cols=27 Identities=22% Similarity=0.131 Sum_probs=22.4
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
++..-|.|+|...+|||+|+++|+...
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~ 51 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDT 51 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhc
Confidence 344557799999999999999999754
No 430
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.09 E-value=0.043 Score=47.45 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+.+
T Consensus 34 e~~~iiG~NGaGKSTLl~~l~Gl~ 57 (287)
T PRK13641 34 SFVALVGHTGSGKSTLMQHFNALL 57 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999854
No 431
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.08 E-value=0.048 Score=41.31 Aligned_cols=21 Identities=19% Similarity=-0.088 Sum_probs=19.3
Q ss_pred eEEEeeCCCCCChHHHHHHHH
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLL 37 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll 37 (193)
.++.++|+.++|||+||+.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 568999999999999999987
No 432
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.07 E-value=0.048 Score=48.75 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=22.1
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
..+..+ -|+|+.+||||+|||.|++++
T Consensus 142 ~~~~ni-lI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 142 DSRLNI-VISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HcCCeE-EEECCCCCCHHHHHHHHHHHH
Confidence 334444 499999999999999999975
No 433
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.07 E-value=0.045 Score=45.85 Aligned_cols=23 Identities=17% Similarity=0.013 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+||+.|.+.
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999984
No 434
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.07 E-value=0.045 Score=44.32 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=22.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
||+|.|+.++|||+|.+.|...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998864
No 435
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.07 E-value=0.048 Score=45.80 Aligned_cols=23 Identities=26% Similarity=0.131 Sum_probs=21.0
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+||+.|.+.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 30 SVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37899999999999999999984
No 436
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.04 E-value=0.043 Score=47.55 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|+|+|+.++|||+||+.|.+.+
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~ 56 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 79999999999999999999854
No 437
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=94.04 E-value=0.27 Score=48.26 Aligned_cols=38 Identities=24% Similarity=0.174 Sum_probs=30.6
Q ss_pred CcHHHHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 1 MAEYVKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 1 ~~e~~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|-|....+.... .++.=|+|+|....|||+|.++|+.+
T Consensus 5 ~~~~~~~~~~~~-~~irnI~ivGh~~~GKTTL~~~ll~~ 42 (720)
T TIGR00490 5 MIDKIKELMWKP-KFIRNIGIVAHIDHGKTTLSDNLLAG 42 (720)
T ss_pred HHHHHHHHhhCc-ccccEEEEEEeCCCCHHHHHHHHHHH
Confidence 456666666664 46788999999999999999999964
No 438
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.04 E-value=0.047 Score=44.43 Aligned_cols=23 Identities=30% Similarity=0.216 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
++.|+|+.++|||+||+.|.+..
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 78999999999999999999853
No 439
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=94.04 E-value=0.046 Score=46.26 Aligned_cols=24 Identities=21% Similarity=0.009 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+|+|+|+.++|||+||+.|.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 32 DVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999964
No 440
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=94.03 E-value=0.049 Score=46.46 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=21.0
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+||+.|.+.
T Consensus 37 e~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 37 QITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37999999999999999999984
No 441
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=94.03 E-value=0.18 Score=39.54 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=18.3
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||.|++++..
T Consensus 3 i~vvG~~gvGKTsli~~~~~ 22 (158)
T cd04103 3 LGIVGNLQSGKSALVHRYLT 22 (158)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 67999999999999998885
No 442
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=94.01 E-value=0.17 Score=46.10 Aligned_cols=21 Identities=29% Similarity=0.200 Sum_probs=19.8
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-|+++|...+|||+|+|.|.+
T Consensus 4 ~vgIVG~PNvGKSTLfnaLt~ 24 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALTK 24 (364)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999997
No 443
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.00 E-value=0.045 Score=47.21 Aligned_cols=23 Identities=26% Similarity=0.120 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 29 ~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 29 VTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999854
No 444
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.99 E-value=0.046 Score=47.66 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=22.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-+++++|+.++|||+||+.|.+.+.
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3789999999999999999999653
No 445
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.99 E-value=0.051 Score=43.19 Aligned_cols=23 Identities=39% Similarity=0.405 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+++|+|+.++|||+||+.|.+.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999999984
No 446
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.98 E-value=0.047 Score=47.13 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=21.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++|+|+.++|||+|++.|.+.+
T Consensus 34 e~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 34 SWTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred CEEEEECCCCCcHHHHHHHHhccc
Confidence 379999999999999999999854
No 447
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.97 E-value=0.048 Score=45.30 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+++++|+.++|||+||+.|.+..
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999854
No 448
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.96 E-value=0.05 Score=45.33 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.++.|+|+.++|||+||+.|.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999853
No 449
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=93.95 E-value=0.044 Score=46.68 Aligned_cols=23 Identities=35% Similarity=0.197 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+..
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 78999999999999999999853
No 450
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=93.93 E-value=0.21 Score=41.30 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=18.7
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|..+.|||.|++++..
T Consensus 3 IvlvGd~gVGKTSLi~~~~~ 22 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLICK 22 (202)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67899999999999999996
No 451
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.91 E-value=0.049 Score=46.78 Aligned_cols=22 Identities=27% Similarity=0.070 Sum_probs=20.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 48 ~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 48 IIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999985
No 452
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.90 E-value=0.05 Score=45.39 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+.+
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 29 ELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999854
No 453
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.90 E-value=0.054 Score=43.72 Aligned_cols=23 Identities=22% Similarity=-0.041 Sum_probs=20.6
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|.++||.++|||+|++.|.+.+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 67889999999999999998753
No 454
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.87 E-value=0.05 Score=46.75 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+|++.|.+.+
T Consensus 31 e~~~i~G~NGsGKSTLl~~l~Gl~ 54 (277)
T PRK13652 31 SRIAVIGPNGAGKSTLFRHFNGIL 54 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999854
No 455
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.85 E-value=0.053 Score=46.13 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+||+.|.+.
T Consensus 43 e~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 43 QVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999984
No 456
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.84 E-value=0.052 Score=46.78 Aligned_cols=24 Identities=17% Similarity=-0.007 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+|++.|.+.+
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~ 57 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDGLL 57 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
No 457
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=93.83 E-value=0.051 Score=47.36 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=21.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++++|+.++|||+||+.|.+.+
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999854
No 458
>PRK09602 translation-associated GTPase; Reviewed
Probab=93.82 E-value=0.41 Score=43.88 Aligned_cols=21 Identities=14% Similarity=-0.045 Sum_probs=19.6
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-|+++|...+|||+|+|.|.+
T Consensus 3 kigivG~pnvGKSTlfn~Lt~ 23 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATL 23 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 388999999999999999997
No 459
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.81 E-value=0.056 Score=45.81 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=21.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++++|+.++|||+||+.|.+.+
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 34 KVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 368999999999999999999853
No 460
>KOG0086|consensus
Probab=93.81 E-value=0.11 Score=42.57 Aligned_cols=58 Identities=24% Similarity=0.282 Sum_probs=36.9
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEE
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVI 97 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vl 97 (193)
-+-|+|+.+||||-||-++... .|+ ...+.|-||-.-+..+- -.|+.+.+-
T Consensus 11 Kfl~iG~aGtGKSCLLh~Fie~-----------------------kfk---DdssHTiGveFgSrIin---VGgK~vKLQ 61 (214)
T KOG0086|consen 11 KFLVIGSAGTGKSCLLHQFIEN-----------------------KFK---DDSSHTIGVEFGSRIVN---VGGKTVKLQ 61 (214)
T ss_pred eeEEeccCCCChhHHHHHHHHh-----------------------hhc---ccccceeeeeecceeee---ecCcEEEEE
Confidence 3568999999999999999962 222 23446677665554431 134445566
Q ss_pred EEecccc
Q psy5032 98 LLDTQGT 104 (193)
Q Consensus 98 llDTEG~ 104 (193)
+-||-|.
T Consensus 62 IWDTAGQ 68 (214)
T KOG0086|consen 62 IWDTAGQ 68 (214)
T ss_pred EeecccH
Confidence 6666654
No 461
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=93.80 E-value=0.048 Score=46.06 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++++|+.++|||+|++.|.+..
T Consensus 23 ei~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 23 EILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 379999999999999999999853
No 462
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.80 E-value=0.046 Score=46.99 Aligned_cols=26 Identities=19% Similarity=0.064 Sum_probs=23.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
-+|+|+|..++|||+|+|.+.+++.-
T Consensus 33 ~FvtViGsNGAGKSTlln~iaG~l~~ 58 (263)
T COG1101 33 DFVTVIGSNGAGKSTLLNAIAGDLKP 58 (263)
T ss_pred ceEEEEcCCCccHHHHHHHhhCcccc
Confidence 47999999999999999999998764
No 463
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.78 E-value=0.054 Score=46.64 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=21.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+.+
T Consensus 48 e~~~I~G~nGsGKSTLl~~l~Gl~ 71 (276)
T PRK14271 48 AVTSLMGPTGSGKTTFLRTLNRMN 71 (276)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 368999999999999999999853
No 464
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=93.76 E-value=0.057 Score=44.52 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=21.4
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+++|+|+.++|||+|++.|.+.
T Consensus 32 ~~~~I~G~nGsGKStLl~~l~G~ 54 (220)
T TIGR02982 32 EIVILTGPSGSGKTTLLTLIGGL 54 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999985
No 465
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=93.75 E-value=0.048 Score=46.75 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=20.6
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.|+|+|++++|||++||.|.+.
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCC
Confidence 5889999999999999999985
No 466
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=93.75 E-value=0.3 Score=47.05 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.9
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
=|+|+|....|||+|+++|+..
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~ 24 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQ 24 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 3789999999999999999974
No 467
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=93.75 E-value=0.055 Score=45.74 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 468
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.74 E-value=0.056 Score=45.94 Aligned_cols=24 Identities=25% Similarity=0.115 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+..
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~Gl~ 57 (261)
T PRK14258 34 KVTAIIGPSGCGKSTFLKCLNRMN 57 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHhccc
Confidence 378999999999999999999954
No 469
>PLN02348 phosphoribulokinase
Probab=93.74 E-value=0.1 Score=47.99 Aligned_cols=28 Identities=18% Similarity=0.068 Sum_probs=24.9
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+..||+|+|+.++|||+|++.|...+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999999774
No 470
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.72 E-value=0.056 Score=46.79 Aligned_cols=23 Identities=22% Similarity=0.072 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+||+.|.+.
T Consensus 66 e~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 66 YVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999984
No 471
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=93.71 E-value=0.054 Score=48.31 Aligned_cols=24 Identities=21% Similarity=0.018 Sum_probs=21.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+.+
T Consensus 32 ei~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999999864
No 472
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.70 E-value=0.055 Score=46.48 Aligned_cols=24 Identities=33% Similarity=0.156 Sum_probs=21.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+|++.|.+.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 479999999999999999999854
No 473
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.70 E-value=0.057 Score=46.79 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 67 ~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 67 VTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 78999999999999999999853
No 474
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.69 E-value=0.056 Score=47.85 Aligned_cols=23 Identities=17% Similarity=0.021 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+|++.|.+.+
T Consensus 54 ~~~I~G~nGsGKSTLl~~L~Gl~ 76 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999854
No 475
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=93.69 E-value=0.054 Score=45.76 Aligned_cols=24 Identities=29% Similarity=0.206 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~ 51 (256)
T TIGR03873 28 SLTGLLGPNGSGKSTLLRLLAGAL 51 (256)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC
Confidence 378999999999999999999854
No 476
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.67 E-value=0.058 Score=43.87 Aligned_cols=23 Identities=26% Similarity=0.144 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+|++.|.+.
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999984
No 477
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.66 E-value=0.058 Score=46.79 Aligned_cols=26 Identities=23% Similarity=0.163 Sum_probs=23.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
.+++|+||.++|||+|+..+++.+..
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p 56 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKP 56 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 57999999999999999999996543
No 478
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=93.65 E-value=0.26 Score=44.94 Aligned_cols=22 Identities=27% Similarity=0.190 Sum_probs=19.7
Q ss_pred EEeeCCCCCChHHHHHHHHhhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l 40 (193)
|.|+|...+|||+|+++|+...
T Consensus 3 ~~~vGhvd~GKSTL~~~ll~~~ 24 (406)
T TIGR02034 3 FLTCGSVDDGKSTLIGRLLHDT 24 (406)
T ss_pred EEEECCCCCCchhhhHHHHHHc
Confidence 6799999999999999999653
No 479
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=93.62 E-value=0.063 Score=45.98 Aligned_cols=23 Identities=26% Similarity=0.118 Sum_probs=21.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+++|+|+.++|||+|++.|.+.
T Consensus 52 e~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 52 RVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37899999999999999999985
No 480
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.61 E-value=0.059 Score=46.69 Aligned_cols=24 Identities=21% Similarity=0.106 Sum_probs=21.9
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+++|+|+.++|||+||+.|.+.+.
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 799999999999999999998643
No 481
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.60 E-value=0.067 Score=47.08 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=21.4
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+-.+ -|+|+.++|||+|||.|++++.
T Consensus 132 ~~~i-lI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 132 RKNI-LVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCeE-EEECCCCCCHHHHHHHHHHHhh
Confidence 3344 4999999999999999998753
No 482
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.58 E-value=0.063 Score=45.51 Aligned_cols=23 Identities=26% Similarity=0.111 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|++..
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl~ 71 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHccc
Confidence 78999999999999999999953
No 483
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.58 E-value=0.071 Score=43.16 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=21.4
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-++.++|+.++|||+|++.|.+.+
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999999854
No 484
>PRK07429 phosphoribulokinase; Provisional
Probab=93.57 E-value=0.082 Score=47.23 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=24.5
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
++..+|+|.|+.++|||+|++.|.+.+.
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~ 33 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLG 33 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhc
Confidence 4567999999999999999999998654
No 485
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=93.53 E-value=0.17 Score=40.37 Aligned_cols=23 Identities=26% Similarity=0.096 Sum_probs=19.8
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
=.=|-++|+.++|||+||++|..
T Consensus 14 ~~~ililGl~~sGKTtll~~l~~ 36 (175)
T PF00025_consen 14 EIKILILGLDGSGKTTLLNRLKN 36 (175)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHS
T ss_pred EEEEEEECCCccchHHHHHHhhh
Confidence 33468999999999999999985
No 486
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.53 E-value=0.055 Score=46.01 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=27.5
Q ss_pred HHHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 4 YVKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 4 ~~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
+...+++..=+.=..|-|+|+.+||||++|+.|+.++..
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred HHHHHHhhccccceEEEEECCCccccchHHHHHhhhccc
Confidence 334444433122356789999999999999999997654
No 487
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.53 E-value=0.085 Score=38.52 Aligned_cols=24 Identities=13% Similarity=-0.022 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
..|-|.|+.++|||+|++.+.+.+
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999864
No 488
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=93.52 E-value=0.41 Score=46.31 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=20.0
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
||+++|....|||+|+|.|.+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg 22 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITG 22 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999986
No 489
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.52 E-value=0.19 Score=48.11 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=22.1
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
=.+|+++|+.++|||+++..|...+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998754
No 490
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=93.51 E-value=0.23 Score=40.11 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=18.7
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|..+.|||.|++++..
T Consensus 8 ivvvGd~~vGKTsli~~~~~ 27 (182)
T cd04172 8 IVVVGDSQCGKTALLHVFAK 27 (182)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999986
No 491
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.51 E-value=0.062 Score=46.60 Aligned_cols=23 Identities=26% Similarity=0.145 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQHLNGLL 57 (290)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999999854
No 492
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=93.50 E-value=0.2 Score=42.17 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=18.4
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|..++|||.|++++..
T Consensus 4 IvvvGd~~vGKTsLi~~~~~ 23 (222)
T cd04173 4 IVVVGDAECGKTALLQVFAK 23 (222)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 56899999999999999986
No 493
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.50 E-value=0.063 Score=46.17 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=21.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+.+
T Consensus 51 e~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 51 DVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999999853
No 494
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.48 E-value=0.057 Score=46.65 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=20.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.|+++|..++|||+||+.|.+.
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi 76 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGI 76 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCc
Confidence 5899999999999999999984
No 495
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.48 E-value=0.064 Score=45.66 Aligned_cols=23 Identities=30% Similarity=0.215 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+..
T Consensus 38 ~~~i~G~nGsGKSTLl~~iaG~~ 60 (257)
T PRK14246 38 IFGIMGPSGSGKSTLLKVLNRLI 60 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999853
No 496
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.47 E-value=0.076 Score=45.84 Aligned_cols=30 Identities=17% Similarity=0.000 Sum_probs=24.7
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
...+=.+|-|+|+.++|||++|+.++.++.
T Consensus 76 ~~~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 76 LEKPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred HhcCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 344556789999999999999999998653
No 497
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=93.47 E-value=0.38 Score=40.43 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=18.7
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|.|+|....|||+|++.|...
T Consensus 2 v~~~G~~~~GKttl~~~~~~~ 22 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQG 22 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 567899999999999999863
No 498
>PRK13351 elongation factor G; Reviewed
Probab=93.47 E-value=0.41 Score=46.52 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=22.4
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+.-|+|+|...+|||+|+++|+.+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~ 31 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFY 31 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHh
Confidence 5677999999999999999999974
No 499
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.47 E-value=0.06 Score=50.16 Aligned_cols=22 Identities=27% Similarity=0.188 Sum_probs=20.5
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.|+|+|+.++|||+|+|.|++.
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 500
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=93.46 E-value=0.2 Score=41.99 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=18.4
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|....|||.|+|+++.
T Consensus 3 IvivG~~~vGKTSLi~r~~~ 22 (220)
T cd04126 3 VVLLGDMNVGKTSLLHRYME 22 (220)
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 67899999999999999986
Done!