Query psy5032
Match_columns 193
No_of_seqs 115 out of 524
Neff 6.2
Searched_HMMs 29240
Date Sat Aug 17 00:03:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ido_A Atlastin-1; GTPase, GTP 100.0 1.5E-53 5.1E-58 389.3 18.2 180 2-187 49-232 (457)
2 3q5d_A Atlastin-1; G protein, 100.0 7.4E-49 2.5E-53 358.1 16.4 176 2-182 49-228 (447)
3 1f5n_A Interferon-induced guan 100.0 1E-31 3.6E-36 252.1 15.1 160 2-187 24-198 (592)
4 3lxx_A GTPase IMAP family memb 98.2 1.6E-05 5.4E-10 64.7 10.7 29 10-38 23-51 (239)
5 3lxw_A GTPase IMAP family memb 98.1 1.7E-05 5.8E-10 65.6 9.8 101 16-150 21-132 (247)
6 2xtp_A GTPase IMAP family memb 98.0 4.7E-05 1.6E-09 62.5 11.6 25 14-38 20-44 (260)
7 4dhe_A Probable GTP-binding pr 97.9 9.4E-05 3.2E-09 58.5 10.9 27 12-38 25-51 (223)
8 3pqc_A Probable GTP-binding pr 97.8 0.00028 9.7E-09 53.9 11.6 26 13-38 20-45 (195)
9 2qu8_A Putative nucleolar GTP- 97.8 0.00043 1.5E-08 55.4 12.6 63 14-107 27-89 (228)
10 3iev_A GTP-binding protein ERA 97.8 0.00016 5.4E-09 61.8 10.5 27 12-38 6-32 (308)
11 1svi_A GTP-binding protein YSX 97.7 0.00031 1.1E-08 54.1 10.8 27 12-38 19-45 (195)
12 2dyk_A GTP-binding protein; GT 97.7 0.00015 5E-09 53.8 7.7 21 18-38 3-23 (161)
13 3t5d_A Septin-7; GTP-binding p 97.6 0.00025 8.5E-09 59.1 9.6 22 17-38 9-30 (274)
14 1wf3_A GTP-binding protein; GT 97.6 0.00014 4.7E-09 62.2 7.4 24 15-38 6-29 (301)
15 1h65_A Chloroplast outer envel 97.5 0.0012 4.2E-08 54.6 11.7 26 13-38 36-61 (270)
16 1ega_A Protein (GTP-binding pr 97.4 0.00028 9.6E-09 60.1 7.4 25 15-39 7-31 (301)
17 3t34_A Dynamin-related protein 97.4 0.00027 9.3E-09 61.2 7.0 25 14-38 32-56 (360)
18 1ek0_A Protein (GTP-binding pr 97.4 0.00039 1.3E-08 51.7 6.9 21 18-38 5-25 (170)
19 1z0j_A RAB-22, RAS-related pro 97.4 0.00047 1.6E-08 51.4 7.1 22 17-38 7-28 (170)
20 2y8e_A RAB-protein 6, GH09086P 97.4 0.00037 1.3E-08 52.4 6.5 22 17-38 15-36 (179)
21 1wms_A RAB-9, RAB9, RAS-relate 97.4 0.0004 1.4E-08 52.4 6.6 24 15-38 6-29 (177)
22 2bov_A RAla, RAS-related prote 97.4 0.0049 1.7E-07 47.5 13.0 29 10-38 8-36 (206)
23 2g6b_A RAS-related protein RAB 97.3 0.00052 1.8E-08 51.8 7.1 24 15-38 9-32 (180)
24 2erx_A GTP-binding protein DI- 97.3 0.00044 1.5E-08 51.5 6.4 21 18-38 5-25 (172)
25 1z08_A RAS-related protein RAB 97.3 0.00049 1.7E-08 51.4 6.6 23 16-38 6-28 (170)
26 1r2q_A RAS-related protein RAB 97.3 0.00057 1.9E-08 50.8 6.9 22 17-38 7-28 (170)
27 3def_A T7I23.11 protein; chlor 97.3 0.00051 1.7E-08 56.8 7.2 25 14-38 34-58 (262)
28 1vg8_A RAS-related protein RAB 97.3 0.00072 2.4E-08 52.5 7.7 26 13-38 5-30 (207)
29 1kao_A RAP2A; GTP-binding prot 97.3 0.00064 2.2E-08 50.2 6.9 21 18-38 5-25 (167)
30 1z2a_A RAS-related protein RAB 97.3 0.00035 1.2E-08 52.0 5.4 23 16-38 5-27 (168)
31 1jwy_B Dynamin A GTPase domain 97.2 0.00067 2.3E-08 56.8 7.4 26 14-39 22-47 (315)
32 3tw8_B RAS-related protein RAB 97.2 0.00064 2.2E-08 51.1 6.3 25 14-38 7-31 (181)
33 3clv_A RAB5 protein, putative; 97.2 0.00097 3.3E-08 50.8 7.4 24 16-39 7-30 (208)
34 1u8z_A RAS-related protein RAL 97.2 0.00083 2.8E-08 49.7 6.8 22 17-38 5-26 (168)
35 1z0f_A RAB14, member RAS oncog 97.2 0.00059 2E-08 51.2 6.0 24 15-38 14-37 (179)
36 1puj_A YLQF, conserved hypothe 97.2 0.00085 2.9E-08 56.8 7.5 22 17-38 121-142 (282)
37 1c1y_A RAS-related protein RAP 97.2 0.0014 4.8E-08 48.6 7.8 21 18-38 5-25 (167)
38 2zej_A Dardarin, leucine-rich 97.2 0.00043 1.5E-08 53.4 5.1 64 18-105 4-67 (184)
39 2j69_A Bacterial dynamin-like 97.2 0.00075 2.6E-08 64.1 7.5 26 14-39 67-92 (695)
40 2ce2_X GTPase HRAS; signaling 97.2 0.0012 3.9E-08 48.6 7.0 21 18-38 5-25 (166)
41 1x3s_A RAS-related protein RAB 97.2 0.001 3.4E-08 50.9 6.9 23 16-38 15-37 (195)
42 2oil_A CATX-8, RAS-related pro 97.1 0.0014 4.7E-08 50.5 7.6 24 15-38 24-47 (193)
43 4dsu_A GTPase KRAS, isoform 2B 97.1 0.0011 3.7E-08 50.3 7.0 21 18-38 6-26 (189)
44 1ky3_A GTP-binding protein YPT 97.1 0.00074 2.5E-08 50.8 5.8 25 14-38 6-30 (182)
45 2bme_A RAB4A, RAS-related prot 97.1 0.0011 3.6E-08 50.5 6.7 24 15-38 9-32 (186)
46 1g16_A RAS-related protein SEC 97.1 0.00082 2.8E-08 50.0 5.9 22 17-38 4-25 (170)
47 1z06_A RAS-related protein RAB 97.1 0.001 3.6E-08 51.1 6.6 25 14-38 18-42 (189)
48 1zbd_A Rabphilin-3A; G protein 97.1 0.0012 4.1E-08 51.3 6.9 24 15-38 7-30 (203)
49 2fg5_A RAB-22B, RAS-related pr 97.1 0.0012 4E-08 51.2 6.8 23 16-38 23-45 (192)
50 3bc1_A RAS-related protein RAB 97.1 0.0016 5.6E-08 49.3 7.2 24 15-38 10-33 (195)
51 2il1_A RAB12; G-protein, GDP, 97.1 0.0022 7.5E-08 49.7 8.1 23 16-38 26-48 (192)
52 2atv_A RERG, RAS-like estrogen 97.0 0.0087 3E-07 46.2 11.5 24 15-38 27-50 (196)
53 2efe_B Small GTP-binding prote 97.0 0.00091 3.1E-08 50.5 5.6 24 15-38 11-34 (181)
54 2e87_A Hypothetical protein PH 97.0 0.01 3.4E-07 51.3 12.9 26 13-38 164-189 (357)
55 3k53_A Ferrous iron transport 97.0 0.0014 4.6E-08 54.4 7.0 24 15-38 2-25 (271)
56 3t1o_A Gliding protein MGLA; G 97.0 0.018 6.3E-07 43.6 13.0 74 15-106 13-86 (198)
57 2a9k_A RAS-related protein RAL 97.0 0.0016 5.6E-08 49.1 6.8 24 15-38 17-40 (187)
58 3iby_A Ferrous iron transport 97.0 0.0025 8.4E-08 53.0 8.4 21 18-38 3-23 (256)
59 2fn4_A P23, RAS-related protei 97.0 0.0026 8.8E-08 47.7 7.8 26 13-38 6-31 (181)
60 3oes_A GTPase rhebl1; small GT 97.0 0.0018 6.3E-08 50.4 7.2 24 15-38 23-46 (201)
61 2gf0_A GTP-binding protein DI- 97.0 0.0041 1.4E-07 47.7 9.0 23 16-38 8-30 (199)
62 2gj8_A MNME, tRNA modification 97.0 0.0026 8.7E-08 48.7 7.7 22 17-38 5-26 (172)
63 3tkl_A RAS-related protein RAB 97.0 0.0024 8.1E-08 48.9 7.5 25 14-38 14-38 (196)
64 3cph_A RAS-related protein SEC 97.0 0.0012 4E-08 51.4 5.8 24 15-38 19-42 (213)
65 2gf9_A RAS-related protein RAB 97.0 0.0023 7.9E-08 49.1 7.4 26 13-38 19-44 (189)
66 2nzj_A GTP-binding protein REM 97.0 0.0021 7.1E-08 48.1 7.0 24 15-38 3-26 (175)
67 3i8s_A Ferrous iron transport 96.9 0.0039 1.3E-07 52.1 9.1 22 17-38 4-25 (274)
68 1oix_A RAS-related protein RAB 96.9 0.0019 6.5E-08 50.3 6.8 24 15-38 28-51 (191)
69 2bcg_Y Protein YP2, GTP-bindin 96.9 0.0014 4.9E-08 51.0 5.9 23 16-38 8-30 (206)
70 2qm8_A GTPase/ATPase; G protei 96.9 0.0024 8.3E-08 55.3 7.9 29 13-41 52-80 (337)
71 2ew1_A RAS-related protein RAB 96.9 0.0022 7.5E-08 50.7 7.0 24 15-38 25-48 (201)
72 3q85_A GTP-binding protein REM 96.9 0.0013 4.6E-08 49.0 5.5 22 17-38 3-24 (169)
73 3con_A GTPase NRAS; structural 96.9 0.0022 7.6E-08 49.0 6.9 22 17-38 22-43 (190)
74 1upt_A ARL1, ADP-ribosylation 96.9 0.0025 8.7E-08 47.4 6.9 22 17-38 8-29 (171)
75 3t5g_A GTP-binding protein RHE 96.9 0.0024 8.1E-08 48.4 6.8 24 15-38 5-28 (181)
76 2ged_A SR-beta, signal recogni 96.9 0.00054 1.8E-08 52.7 3.0 25 14-38 46-70 (193)
77 1mh1_A RAC1; GTP-binding, GTPa 96.8 0.0025 8.7E-08 48.1 6.7 22 17-38 6-27 (186)
78 3c5c_A RAS-like protein 12; GD 96.8 0.0028 9.7E-08 48.9 7.1 24 15-38 20-43 (187)
79 3kkq_A RAS-related protein M-R 96.8 0.0042 1.4E-07 47.1 7.9 27 12-38 14-40 (183)
80 2p5s_A RAS and EF-hand domain 96.8 0.0017 5.8E-08 50.5 5.8 25 14-38 26-50 (199)
81 3a1s_A Iron(II) transport prot 96.8 0.0026 8.8E-08 52.9 7.2 23 16-38 5-27 (258)
82 3ihw_A Centg3; RAS, centaurin, 96.8 0.0028 9.7E-08 49.0 7.0 25 14-38 18-42 (184)
83 2f9l_A RAB11B, member RAS onco 96.8 0.0023 7.7E-08 49.9 6.4 23 16-38 5-27 (199)
84 2x2e_A Dynamin-1; nitration, h 96.8 0.00085 2.9E-08 58.1 4.2 25 15-39 30-54 (353)
85 3llu_A RAS-related GTP-binding 96.8 0.0039 1.3E-07 48.4 7.3 25 14-38 18-42 (196)
86 2cxx_A Probable GTP-binding pr 96.8 0.0024 8.2E-08 48.5 6.0 21 18-38 3-23 (190)
87 1r8s_A ADP-ribosylation factor 96.8 0.0016 5.4E-08 48.4 4.8 20 19-38 3-22 (164)
88 3reg_A RHO-like small GTPase; 96.7 0.0032 1.1E-07 48.5 6.6 24 15-38 22-45 (194)
89 4bas_A ADP-ribosylation factor 96.7 0.0013 4.4E-08 50.5 4.3 27 12-38 13-39 (199)
90 2a5j_A RAS-related protein RAB 96.7 0.0017 5.7E-08 50.2 4.9 24 15-38 20-43 (191)
91 2qtf_A Protein HFLX, GTP-bindi 96.7 0.0015 5.1E-08 57.4 5.1 26 13-38 176-201 (364)
92 2aka_B Dynamin-1; fusion prote 96.7 0.0016 5.3E-08 54.0 4.9 26 14-39 24-49 (299)
93 2fh5_B SR-beta, signal recogni 96.7 0.0045 1.5E-07 48.4 7.3 24 15-38 6-29 (214)
94 2wjg_A FEOB, ferrous iron tran 96.7 0.0039 1.3E-07 47.5 6.6 23 16-38 7-29 (188)
95 2lkc_A Translation initiation 96.7 0.0047 1.6E-07 46.3 7.1 26 13-38 5-30 (178)
96 3zvr_A Dynamin-1; hydrolase, D 96.7 0.00094 3.2E-08 64.5 3.8 25 15-39 50-74 (772)
97 2f7s_A C25KG, RAS-related prot 96.7 0.0019 6.4E-08 50.7 4.9 24 15-38 24-47 (217)
98 3qq5_A Small GTP-binding prote 96.7 0.0075 2.6E-07 54.1 9.4 26 13-38 31-56 (423)
99 2yc2_C IFT27, small RAB-relate 96.7 0.00088 3E-08 51.8 2.8 22 17-38 21-42 (208)
100 1nrj_B SR-beta, signal recogni 96.6 0.0013 4.3E-08 51.8 3.7 27 13-39 9-35 (218)
101 2qpt_A EH domain-containing pr 96.6 0.002 6.8E-08 59.6 5.6 25 15-39 64-88 (550)
102 2fv8_A H6, RHO-related GTP-bin 96.6 0.0035 1.2E-07 49.1 6.3 21 18-38 27-47 (207)
103 2wji_A Ferrous iron transport 96.6 0.0021 7.2E-08 48.6 4.8 22 17-38 4-25 (165)
104 2o52_A RAS-related protein RAB 96.6 0.0015 5.1E-08 51.1 4.1 24 15-38 24-47 (200)
105 1zd9_A ADP-ribosylation factor 96.6 0.0046 1.6E-07 47.6 6.8 24 15-38 21-44 (188)
106 2hxs_A RAB-26, RAS-related pro 96.6 0.00099 3.4E-08 50.2 2.8 24 15-38 5-28 (178)
107 2iwr_A Centaurin gamma 1; ANK 96.6 0.0036 1.2E-07 47.2 6.0 23 16-38 7-29 (178)
108 1pui_A ENGB, probable GTP-bind 96.6 0.0059 2E-07 47.5 7.3 24 15-38 25-48 (210)
109 1m7b_A RND3/RHOE small GTP-bin 96.6 0.0054 1.8E-07 46.9 6.9 24 15-38 6-29 (184)
110 1ksh_A ARF-like protein 2; sma 96.5 0.0053 1.8E-07 46.7 6.6 25 14-38 16-40 (186)
111 2qag_A Septin-2, protein NEDD5 96.5 0.0023 7.8E-08 55.9 5.0 20 19-38 40-59 (361)
112 2fu5_C RAS-related protein RAB 96.5 0.0013 4.3E-08 50.0 2.9 24 15-38 7-30 (183)
113 1zj6_A ADP-ribosylation factor 96.5 0.0066 2.3E-07 46.4 7.0 25 14-38 14-38 (187)
114 3cpj_B GTP-binding protein YPT 96.5 0.0028 9.6E-08 50.3 5.0 25 14-38 11-35 (223)
115 4gzl_A RAS-related C3 botulinu 96.5 0.006 2.1E-07 47.8 6.8 24 15-38 29-52 (204)
116 3ec1_A YQEH GTPase; atnos1, at 96.5 0.0048 1.6E-07 54.1 6.8 21 19-39 165-185 (369)
117 3c8u_A Fructokinase; YP_612366 96.5 0.0033 1.1E-07 49.9 5.2 29 13-41 19-47 (208)
118 2hup_A RAS-related protein RAB 96.5 0.0035 1.2E-07 49.1 5.3 25 14-38 27-51 (201)
119 3q72_A GTP-binding protein RAD 96.5 0.003 1E-07 46.9 4.7 22 17-38 3-24 (166)
120 3q3j_B RHO-related GTP-binding 96.5 0.0081 2.8E-07 47.6 7.5 25 14-38 25-49 (214)
121 2h57_A ADP-ribosylation factor 96.4 0.004 1.4E-07 47.8 5.3 24 15-38 20-43 (190)
122 2j0v_A RAC-like GTP-binding pr 96.4 0.0062 2.1E-07 47.5 6.4 24 15-38 8-31 (212)
123 1m2o_B GTP-binding protein SAR 96.4 0.0071 2.4E-07 46.8 6.7 22 17-38 24-45 (190)
124 2gco_A H9, RHO-related GTP-bin 96.4 0.006 2E-07 47.5 6.1 22 17-38 26-47 (201)
125 1mky_A Probable GTP-binding pr 96.4 0.0026 8.9E-08 56.6 4.5 25 15-39 179-203 (439)
126 4dcu_A GTP-binding protein ENG 96.4 0.01 3.5E-07 53.0 8.4 23 16-38 23-45 (456)
127 4djt_A GTP-binding nuclear pro 96.4 0.002 6.8E-08 50.7 3.3 24 15-38 10-33 (218)
128 3dz8_A RAS-related protein RAB 96.4 0.0018 6.2E-08 49.9 2.9 25 15-39 22-46 (191)
129 2q3h_A RAS homolog gene family 96.3 0.0079 2.7E-07 46.4 6.5 26 13-38 17-42 (201)
130 2j1l_A RHO-related GTP-binding 96.3 0.0051 1.7E-07 48.6 5.5 24 15-38 33-56 (214)
131 4a9a_A Ribosome-interacting GT 96.3 0.011 3.6E-07 52.5 8.1 24 15-38 71-94 (376)
132 3bwd_D RAC-like GTP-binding pr 96.3 0.003 1E-07 47.6 4.0 22 17-38 9-30 (182)
133 2atx_A Small GTP binding prote 96.3 0.0078 2.7E-07 46.2 6.3 24 15-38 17-40 (194)
134 1gwn_A RHO-related GTP-binding 96.3 0.012 4E-07 46.5 7.5 25 14-38 26-50 (205)
135 1f6b_A SAR1; gtpases, N-termin 96.3 0.0051 1.7E-07 48.1 5.3 25 13-38 23-47 (198)
136 3cnl_A YLQF, putative uncharac 96.3 0.0041 1.4E-07 52.1 4.9 22 17-38 100-121 (262)
137 3cbq_A GTP-binding protein REM 96.3 0.0055 1.9E-07 47.9 5.4 26 13-38 20-45 (195)
138 1wxq_A GTP-binding protein; st 96.3 0.0041 1.4E-07 55.2 5.0 20 19-38 3-22 (397)
139 2x77_A ADP-ribosylation factor 96.2 0.01 3.5E-07 45.3 6.6 29 10-38 15-44 (189)
140 2www_A Methylmalonic aciduria 96.2 0.0043 1.5E-07 53.9 4.9 30 12-41 70-99 (349)
141 1jal_A YCHF protein; nucleotid 96.2 0.0069 2.3E-07 53.5 6.1 21 18-38 4-24 (363)
142 2h17_A ADP-ribosylation factor 96.2 0.0095 3.3E-07 45.4 6.2 24 15-38 20-43 (181)
143 2hjg_A GTP-binding protein ENG 96.1 0.012 4E-07 52.3 7.4 24 15-38 174-197 (436)
144 2hjg_A GTP-binding protein ENG 96.1 0.011 3.8E-07 52.5 7.2 22 17-38 4-25 (436)
145 2cjw_A GTP-binding protein GEM 96.1 0.011 3.7E-07 46.0 6.2 24 15-38 5-28 (192)
146 1xzp_A Probable tRNA modificat 96.1 0.0087 3E-07 54.5 6.4 23 17-39 244-266 (482)
147 4dcu_A GTP-binding protein ENG 96.1 0.036 1.2E-06 49.4 10.3 25 14-38 193-217 (456)
148 1rz3_A Hypothetical protein rb 96.0 0.0057 1.9E-07 48.4 4.4 34 8-41 14-47 (201)
149 3tr0_A Guanylate kinase, GMP k 96.0 0.004 1.4E-07 48.5 3.4 24 17-40 8-31 (205)
150 3a00_A Guanylate kinase, GMP k 96.0 0.0028 9.5E-08 49.5 2.4 24 18-41 3-26 (186)
151 2b6h_A ADP-ribosylation factor 96.0 0.0062 2.1E-07 47.3 4.3 27 12-38 25-51 (192)
152 3r7w_A Gtpase1, GTP-binding pr 96.0 0.011 3.7E-07 50.2 6.1 20 19-38 6-25 (307)
153 1moz_A ARL1, ADP-ribosylation 96.0 0.0026 8.8E-08 48.2 2.0 24 15-38 17-40 (183)
154 3h2y_A GTPase family protein; 96.0 0.0092 3.1E-07 52.3 5.7 22 18-39 162-183 (368)
155 1kgd_A CASK, peripheral plasma 95.9 0.0047 1.6E-07 48.0 3.4 24 17-40 6-29 (180)
156 1fzq_A ADP-ribosylation factor 95.9 0.016 5.5E-07 44.4 6.4 25 14-38 14-38 (181)
157 1znw_A Guanylate kinase, GMP k 95.9 0.0046 1.6E-07 49.1 3.3 24 17-40 21-44 (207)
158 1mky_A Probable GTP-binding pr 95.9 0.028 9.6E-07 49.9 8.8 22 17-38 2-23 (439)
159 2g3y_A GTP-binding protein GEM 95.9 0.016 5.6E-07 46.5 6.6 25 14-38 35-59 (211)
160 3gj0_A GTP-binding nuclear pro 95.9 0.0084 2.9E-07 47.3 4.8 25 14-38 13-37 (221)
161 3gee_A MNME, tRNA modification 95.9 0.0042 1.4E-07 56.5 3.2 24 15-39 233-256 (476)
162 2xex_A Elongation factor G; GT 95.9 0.036 1.2E-06 52.5 9.7 27 13-39 7-33 (693)
163 3asz_A Uridine kinase; cytidin 95.9 0.0052 1.8E-07 48.3 3.4 27 15-41 5-31 (211)
164 2wkq_A NPH1-1, RAS-related C3 95.9 0.015 5.1E-07 48.3 6.3 24 15-38 154-177 (332)
165 1odf_A YGR205W, hypothetical 3 95.8 0.0085 2.9E-07 50.9 4.8 30 12-41 27-56 (290)
166 3tif_A Uncharacterized ABC tra 95.8 0.0048 1.7E-07 50.7 2.9 24 17-40 32-55 (235)
167 3b1v_A Ferrous iron uptake tra 95.8 0.013 4.4E-07 49.2 5.6 22 17-38 4-25 (272)
168 2onk_A Molybdate/tungstate ABC 95.7 0.0059 2E-07 50.5 3.3 25 17-41 25-49 (240)
169 1lvg_A Guanylate kinase, GMP k 95.7 0.0054 1.8E-07 48.6 2.8 24 17-40 5-28 (198)
170 4dkx_A RAS-related protein RAB 95.7 0.015 5E-07 47.1 5.5 59 18-105 15-73 (216)
171 2vp4_A Deoxynucleoside kinase; 95.7 0.0052 1.8E-07 49.7 2.7 39 1-39 1-43 (230)
172 3sop_A Neuronal-specific septi 95.6 0.0051 1.7E-07 51.7 2.7 24 18-41 4-27 (270)
173 3geh_A MNME, tRNA modification 95.6 0.0025 8.7E-08 57.7 0.8 21 19-39 227-247 (462)
174 3b85_A Phosphate starvation-in 95.6 0.0066 2.3E-07 49.1 3.1 23 17-39 23-45 (208)
175 3dpu_A RAB family protein; roc 95.6 0.011 3.8E-07 53.8 4.9 24 15-38 40-63 (535)
176 2pcj_A ABC transporter, lipopr 95.6 0.0055 1.9E-07 49.9 2.6 23 18-40 32-54 (224)
177 1z6g_A Guanylate kinase; struc 95.6 0.0062 2.1E-07 49.0 2.7 23 18-40 25-47 (218)
178 1g6h_A High-affinity branched- 95.5 0.0068 2.3E-07 50.4 2.9 25 17-41 34-58 (257)
179 2rdo_7 EF-G, elongation factor 95.5 0.092 3.1E-06 49.8 11.0 26 14-39 8-33 (704)
180 2pze_A Cystic fibrosis transme 95.5 0.0072 2.5E-07 49.4 2.9 23 18-40 36-58 (229)
181 1ye8_A Protein THEP1, hypothet 95.5 0.0095 3.3E-07 46.8 3.5 23 18-40 2-24 (178)
182 3aez_A Pantothenate kinase; tr 95.5 0.0086 2.9E-07 51.4 3.5 28 14-41 88-115 (312)
183 2jeo_A Uridine-cytidine kinase 95.5 0.0085 2.9E-07 48.8 3.3 25 16-40 25-49 (245)
184 1s96_A Guanylate kinase, GMP k 95.5 0.0087 3E-07 48.7 3.4 25 17-41 17-41 (219)
185 2eyu_A Twitching motility prot 95.5 0.0088 3E-07 50.0 3.5 27 15-41 24-50 (261)
186 1lnz_A SPO0B-associated GTP-bi 95.5 0.016 5.4E-07 50.5 5.2 23 16-38 158-180 (342)
187 3sjy_A Translation initiation 95.5 0.1 3.5E-06 45.7 10.5 28 12-39 4-31 (403)
188 2cbz_A Multidrug resistance-as 95.4 0.0075 2.6E-07 49.6 2.9 24 18-41 33-56 (237)
189 1dar_A EF-G, elongation factor 95.4 0.053 1.8E-06 51.3 9.1 28 12-39 8-35 (691)
190 3cb4_D GTP-binding protein LEP 95.4 0.038 1.3E-06 51.7 8.0 25 15-39 3-27 (599)
191 1b0u_A Histidine permease; ABC 95.4 0.0078 2.7E-07 50.3 2.9 24 17-40 33-56 (262)
192 1mv5_A LMRA, multidrug resista 95.4 0.0079 2.7E-07 49.5 2.9 25 17-41 29-53 (243)
193 4gp7_A Metallophosphoesterase; 95.4 0.0081 2.8E-07 46.4 2.8 21 17-37 10-30 (171)
194 1ji0_A ABC transporter; ATP bi 95.4 0.008 2.7E-07 49.4 2.9 23 18-40 34-56 (240)
195 4g1u_C Hemin import ATP-bindin 95.4 0.0077 2.6E-07 50.5 2.8 23 18-40 39-61 (266)
196 2d2e_A SUFC protein; ABC-ATPas 95.4 0.0091 3.1E-07 49.4 3.2 22 18-39 31-52 (250)
197 3gfo_A Cobalt import ATP-bindi 95.4 0.0082 2.8E-07 50.8 2.9 24 17-40 35-58 (275)
198 1zp6_A Hypothetical protein AT 95.4 0.0087 3E-07 46.1 2.9 23 17-39 10-32 (191)
199 1sgw_A Putative ABC transporte 95.4 0.0069 2.4E-07 49.3 2.4 23 18-40 37-59 (214)
200 2h5e_A Peptide chain release f 95.4 0.039 1.3E-06 50.7 7.7 25 15-39 12-36 (529)
201 2kjq_A DNAA-related protein; s 95.3 0.015 5.2E-07 44.3 4.1 37 3-41 25-61 (149)
202 1vpl_A ABC transporter, ATP-bi 95.3 0.0088 3E-07 50.0 2.9 24 17-40 42-65 (256)
203 2ff7_A Alpha-hemolysin translo 95.3 0.0087 3E-07 49.6 2.9 23 18-40 37-59 (247)
204 2j41_A Guanylate kinase; GMP, 95.3 0.011 3.7E-07 45.9 3.3 24 17-40 7-30 (207)
205 2zu0_C Probable ATP-dependent 95.3 0.01 3.4E-07 49.7 3.3 23 17-39 47-69 (267)
206 1ni3_A YCHF GTPase, YCHF GTP-b 95.2 0.068 2.3E-06 47.5 8.7 29 9-38 14-42 (392)
207 2olj_A Amino acid ABC transpor 95.2 0.0096 3.3E-07 50.0 2.9 24 17-40 51-74 (263)
208 2c78_A Elongation factor TU-A; 95.2 0.1 3.6E-06 45.6 9.7 27 13-39 8-34 (405)
209 2qi9_C Vitamin B12 import ATP- 95.2 0.01 3.4E-07 49.4 2.9 23 18-40 28-50 (249)
210 2nq2_C Hypothetical ABC transp 95.2 0.01 3.4E-07 49.4 2.9 24 18-41 33-56 (253)
211 2ixe_A Antigen peptide transpo 95.2 0.01 3.4E-07 49.9 2.9 23 18-40 47-69 (271)
212 1htw_A HI0065; nucleotide-bind 95.2 0.014 4.7E-07 45.3 3.5 25 16-40 33-57 (158)
213 1kag_A SKI, shikimate kinase I 95.2 0.011 3.9E-07 44.7 2.9 23 18-40 6-28 (173)
214 2qnr_A Septin-2, protein NEDD5 95.2 0.014 5E-07 49.5 3.9 21 19-39 21-41 (301)
215 2yz2_A Putative ABC transporte 95.2 0.01 3.5E-07 49.6 2.9 23 18-40 35-57 (266)
216 1tq4_A IIGP1, interferon-induc 95.1 0.0064 2.2E-07 54.5 1.7 25 15-39 68-92 (413)
217 2ghi_A Transport protein; mult 95.1 0.011 3.6E-07 49.4 2.9 23 18-40 48-70 (260)
218 3tqc_A Pantothenate kinase; bi 95.1 0.025 8.4E-07 49.0 5.3 29 13-41 89-117 (321)
219 4a74_A DNA repair and recombin 95.1 0.012 4.1E-07 46.3 3.0 23 17-39 26-48 (231)
220 2ihy_A ABC transporter, ATP-bi 95.1 0.011 3.9E-07 49.9 2.9 24 18-41 49-72 (279)
221 3th5_A RAS-related C3 botulinu 94.1 0.0039 1.3E-07 48.5 0.0 24 15-38 29-52 (204)
222 1kk1_A EIF2gamma; initiation o 95.0 0.068 2.3E-06 46.9 8.1 28 11-38 5-32 (410)
223 2ywe_A GTP-binding protein LEP 95.0 0.061 2.1E-06 50.4 8.1 25 15-39 5-29 (600)
224 2ehv_A Hypothetical protein PH 95.0 0.014 5E-07 46.4 3.3 22 17-38 31-52 (251)
225 3l0i_B RAS-related protein RAB 95.0 0.0026 8.7E-08 49.5 -1.3 25 14-38 31-55 (199)
226 3uie_A Adenylyl-sulfate kinase 94.9 0.018 6E-07 45.3 3.5 27 15-41 24-50 (200)
227 4eun_A Thermoresistant glucoki 94.9 0.017 5.9E-07 45.3 3.4 25 16-40 29-53 (200)
228 3jvv_A Twitching mobility prot 94.9 0.016 5.6E-07 50.7 3.5 27 16-42 123-149 (356)
229 3tr5_A RF-3, peptide chain rel 94.9 0.043 1.5E-06 50.5 6.4 25 15-39 12-36 (528)
230 2v9p_A Replication protein E1; 94.9 0.016 5.4E-07 50.0 3.3 24 17-40 127-150 (305)
231 3tau_A Guanylate kinase, GMP k 94.8 0.018 6E-07 45.8 3.4 25 16-40 8-32 (208)
232 2bdt_A BH3686; alpha-beta prot 94.8 0.018 6.2E-07 44.4 3.3 22 18-39 4-25 (189)
233 2qag_B Septin-6, protein NEDD5 94.8 0.014 4.9E-07 52.6 3.0 21 19-39 45-65 (427)
234 1sq5_A Pantothenate kinase; P- 94.8 0.015 5.2E-07 49.3 3.0 28 14-41 78-105 (308)
235 3p32_A Probable GTPase RV1496/ 94.8 0.029 9.9E-07 48.5 4.8 30 12-41 75-104 (355)
236 1nij_A Hypothetical protein YJ 94.8 0.016 5.6E-07 49.4 3.2 26 14-39 2-27 (318)
237 3lnc_A Guanylate kinase, GMP k 94.8 0.011 3.8E-07 47.4 2.0 24 17-40 28-52 (231)
238 3p26_A Elongation factor 1 alp 94.8 0.071 2.4E-06 48.0 7.5 26 14-39 31-56 (483)
239 1np6_A Molybdopterin-guanine d 94.7 0.022 7.5E-07 44.9 3.6 27 15-41 5-31 (174)
240 1cke_A CK, MSSA, protein (cyti 94.7 0.02 6.8E-07 45.2 3.4 24 17-40 6-29 (227)
241 3ney_A 55 kDa erythrocyte memb 94.7 0.02 6.9E-07 46.3 3.4 24 17-40 20-43 (197)
242 2pjz_A Hypothetical protein ST 94.7 0.017 5.8E-07 48.4 2.9 23 18-40 32-54 (263)
243 1p9r_A General secretion pathw 94.6 0.021 7.1E-07 51.2 3.5 28 14-41 165-192 (418)
244 1u0l_A Probable GTPase ENGC; p 94.6 0.017 5.8E-07 48.9 2.8 22 18-39 171-192 (301)
245 1n0u_A EF-2, elongation factor 94.6 0.1 3.5E-06 50.6 8.5 36 3-39 7-42 (842)
246 3lvq_E ARF-GAP with SH3 domain 94.6 0.051 1.7E-06 48.6 6.0 23 16-38 322-344 (497)
247 2i3b_A HCR-ntpase, human cance 94.6 0.02 6.7E-07 45.6 3.0 24 18-41 3-26 (189)
248 3kb2_A SPBC2 prophage-derived 94.6 0.025 8.6E-07 42.3 3.4 24 17-40 2-25 (173)
249 4e22_A Cytidylate kinase; P-lo 94.5 0.029 9.8E-07 46.1 4.0 25 14-38 25-49 (252)
250 1xjc_A MOBB protein homolog; s 94.5 0.025 8.7E-07 44.6 3.5 28 15-42 3-30 (169)
251 3nh6_A ATP-binding cassette SU 94.5 0.012 4.1E-07 50.6 1.7 24 17-40 81-104 (306)
252 1zun_B Sulfate adenylate trans 94.5 0.091 3.1E-06 46.6 7.5 27 13-39 21-47 (434)
253 3t61_A Gluconokinase; PSI-biol 94.5 0.023 8E-07 44.4 3.2 25 16-40 18-42 (202)
254 2qt1_A Nicotinamide riboside k 94.5 0.026 8.8E-07 44.3 3.4 26 15-40 20-45 (207)
255 2bbs_A Cystic fibrosis transme 94.4 0.018 6.1E-07 49.0 2.5 24 18-41 66-89 (290)
256 3lw7_A Adenylate kinase relate 94.4 0.025 8.5E-07 42.0 3.1 21 18-39 3-23 (179)
257 2rcn_A Probable GTPase ENGC; Y 94.4 0.022 7.4E-07 50.2 3.1 22 18-39 217-238 (358)
258 2f1r_A Molybdopterin-guanine d 94.4 0.011 3.9E-07 46.4 1.1 25 17-41 3-27 (171)
259 2bbw_A Adenylate kinase 4, AK4 94.4 0.026 8.7E-07 45.8 3.3 23 16-38 27-49 (246)
260 3ec2_A DNA replication protein 94.3 0.028 9.5E-07 43.1 3.3 25 17-41 39-63 (180)
261 1knq_A Gluconate kinase; ALFA/ 94.3 0.042 1.4E-06 41.7 4.2 25 15-39 7-31 (175)
262 2wsm_A Hydrogenase expression/ 94.3 0.028 9.6E-07 44.1 3.4 27 14-40 28-54 (221)
263 3tui_C Methionine import ATP-b 94.3 0.025 8.6E-07 50.0 3.3 24 17-40 55-78 (366)
264 2ewv_A Twitching motility prot 94.3 0.027 9.1E-07 49.4 3.4 27 15-41 135-161 (372)
265 1z47_A CYSA, putative ABC-tran 94.3 0.025 8.5E-07 49.7 3.2 25 17-41 42-66 (355)
266 1rj9_A FTSY, signal recognitio 94.3 0.032 1.1E-06 47.7 3.9 28 15-42 101-128 (304)
267 3b9q_A Chloroplast SRP recepto 94.2 0.029 1E-06 47.8 3.5 26 17-42 101-126 (302)
268 3o47_A ADP-ribosylation factor 94.2 0.046 1.6E-06 46.8 4.8 22 17-38 166-187 (329)
269 2p67_A LAO/AO transport system 94.2 0.041 1.4E-06 47.3 4.4 31 11-41 51-81 (341)
270 1uj2_A Uridine-cytidine kinase 94.2 0.035 1.2E-06 45.3 3.7 26 15-40 21-46 (252)
271 2if2_A Dephospho-COA kinase; a 94.2 0.028 9.5E-07 43.8 3.0 21 18-38 3-23 (204)
272 2hf9_A Probable hydrogenase ni 94.1 0.035 1.2E-06 43.7 3.6 27 14-40 36-62 (226)
273 1uf9_A TT1252 protein; P-loop, 94.1 0.035 1.2E-06 42.8 3.5 26 14-39 6-31 (203)
274 3e70_C DPA, signal recognition 94.1 0.06 2E-06 46.6 5.3 29 14-42 127-155 (328)
275 1g29_1 MALK, maltose transport 94.1 0.028 9.5E-07 49.6 3.2 24 18-41 31-54 (372)
276 2yyz_A Sugar ABC transporter, 94.1 0.028 9.5E-07 49.4 3.2 25 17-41 30-54 (359)
277 1jjv_A Dephospho-COA kinase; P 94.1 0.031 1.1E-06 43.7 3.2 22 17-38 3-24 (206)
278 2it1_A 362AA long hypothetical 94.1 0.029 9.9E-07 49.4 3.3 25 17-41 30-54 (362)
279 2yv5_A YJEQ protein; hydrolase 94.1 0.03 1E-06 47.5 3.2 22 18-40 167-188 (302)
280 2gza_A Type IV secretion syste 94.1 0.02 6.9E-07 49.9 2.2 23 18-40 177-199 (361)
281 3j2k_7 ERF3, eukaryotic polype 94.1 0.25 8.5E-06 44.0 9.4 27 13-39 14-40 (439)
282 3rlf_A Maltose/maltodextrin im 94.1 0.029 1E-06 49.8 3.3 25 17-41 30-54 (381)
283 1v43_A Sugar-binding transport 94.0 0.03 1E-06 49.4 3.3 25 17-41 38-62 (372)
284 3fvq_A Fe(3+) IONS import ATP- 94.0 0.026 8.9E-07 49.7 2.8 25 17-41 31-55 (359)
285 2pt7_A CAG-ALFA; ATPase, prote 94.0 0.02 6.7E-07 49.4 1.9 24 18-41 173-196 (330)
286 2og2_A Putative signal recogni 93.9 0.062 2.1E-06 47.2 5.0 27 16-42 157-183 (359)
287 1s0u_A EIF-2-gamma, translatio 93.9 0.16 5.6E-06 44.5 7.7 26 13-38 5-30 (408)
288 2jaq_A Deoxyguanosine kinase; 93.8 0.044 1.5E-06 42.1 3.5 23 18-40 2-24 (205)
289 3izq_1 HBS1P, elongation facto 93.8 0.11 3.9E-06 48.4 6.9 26 14-39 165-190 (611)
290 2w0m_A SSO2452; RECA, SSPF, un 93.7 0.042 1.5E-06 42.9 3.3 25 17-41 24-48 (235)
291 2qor_A Guanylate kinase; phosp 93.7 0.035 1.2E-06 43.6 2.8 24 17-40 13-36 (204)
292 2oap_1 GSPE-2, type II secreti 93.7 0.017 5.8E-07 53.0 1.0 23 18-40 262-284 (511)
293 3szr_A Interferon-induced GTP- 93.6 0.029 9.8E-07 52.3 2.5 25 16-40 45-69 (608)
294 2yhs_A FTSY, cell division pro 93.6 0.063 2.2E-06 49.4 4.7 27 16-42 293-319 (503)
295 3d31_A Sulfate/molybdate ABC t 93.6 0.026 9E-07 49.3 2.1 25 17-41 27-51 (348)
296 1d2e_A Elongation factor TU (E 93.6 0.17 5.8E-06 44.3 7.3 24 16-39 3-26 (397)
297 1kht_A Adenylate kinase; phosp 93.5 0.054 1.8E-06 41.2 3.5 24 18-41 5-28 (192)
298 1nks_A Adenylate kinase; therm 93.5 0.047 1.6E-06 41.5 3.1 25 17-41 2-26 (194)
299 1ly1_A Polynucleotide kinase; 93.4 0.056 1.9E-06 40.7 3.4 22 17-38 3-24 (181)
300 3ozx_A RNAse L inhibitor; ATP 93.4 0.04 1.4E-06 50.8 2.9 24 17-40 26-49 (538)
301 2dy1_A Elongation factor G; tr 93.3 0.33 1.1E-05 45.6 9.3 26 14-39 7-32 (665)
302 1gtv_A TMK, thymidylate kinase 93.3 0.021 7.1E-07 44.6 0.9 24 18-41 2-25 (214)
303 3gd7_A Fusion complex of cysti 93.3 0.041 1.4E-06 48.9 2.8 25 17-41 48-72 (390)
304 2pez_A Bifunctional 3'-phospho 93.3 0.061 2.1E-06 41.1 3.5 24 17-40 6-29 (179)
305 3vaa_A Shikimate kinase, SK; s 93.3 0.062 2.1E-06 42.0 3.6 26 15-40 24-49 (199)
306 1oxx_K GLCV, glucose, ABC tran 93.3 0.024 8.3E-07 49.6 1.3 25 17-41 32-56 (353)
307 1lw7_A Transcriptional regulat 93.2 0.042 1.5E-06 47.4 2.8 26 16-41 170-195 (365)
308 1yqt_A RNAse L inhibitor; ATP- 93.2 0.049 1.7E-06 50.1 3.3 24 17-40 48-71 (538)
309 1vht_A Dephospho-COA kinase; s 93.2 0.059 2E-06 42.5 3.4 22 17-38 5-26 (218)
310 1wb1_A Translation elongation 93.1 0.13 4.4E-06 46.5 5.9 23 16-38 19-41 (482)
311 2qag_C Septin-7; cell cycle, c 93.1 0.042 1.5E-06 49.2 2.7 21 19-39 34-54 (418)
312 1t9h_A YLOQ, probable GTPase E 93.1 0.014 4.9E-07 50.2 -0.5 23 18-40 175-197 (307)
313 1g7s_A Translation initiation 93.1 0.074 2.5E-06 49.7 4.3 23 17-39 6-28 (594)
314 1f60_A Elongation factor EEF1A 93.1 0.13 4.3E-06 46.2 5.7 26 14-39 5-30 (458)
315 3ake_A Cytidylate kinase; CMP 93.1 0.068 2.3E-06 41.3 3.5 23 18-40 4-26 (208)
316 3izy_P Translation initiation 93.0 0.035 1.2E-06 51.3 2.0 22 18-39 6-27 (537)
317 3j16_B RLI1P; ribosome recycli 93.0 0.055 1.9E-06 50.7 3.3 25 17-41 104-128 (608)
318 2npi_A Protein CLP1; CLP1-PCF1 92.9 0.042 1.5E-06 49.7 2.4 24 18-41 140-163 (460)
319 2ze6_A Isopentenyl transferase 92.9 0.072 2.4E-06 43.8 3.5 24 17-40 2-25 (253)
320 1tev_A UMP-CMP kinase; ploop, 92.8 0.082 2.8E-06 40.2 3.5 24 17-40 4-27 (196)
321 2rhm_A Putative kinase; P-loop 92.8 0.07 2.4E-06 40.8 3.1 24 17-40 6-29 (193)
322 1qhx_A CPT, protein (chloramph 92.7 0.081 2.8E-06 40.0 3.4 23 18-40 5-27 (178)
323 2z0h_A DTMP kinase, thymidylat 92.7 0.081 2.8E-06 40.5 3.5 24 18-41 2-25 (197)
324 3euj_A Chromosome partition pr 92.7 0.067 2.3E-06 48.9 3.4 25 17-41 30-54 (483)
325 2plr_A DTMP kinase, probable t 92.7 0.083 2.8E-06 40.8 3.5 25 17-41 5-29 (213)
326 2pbr_A DTMP kinase, thymidylat 92.7 0.083 2.8E-06 40.2 3.5 23 18-40 2-24 (195)
327 2cvh_A DNA repair and recombin 92.7 0.077 2.6E-06 41.3 3.3 22 17-38 21-42 (220)
328 1zo1_I IF2, translation initia 92.7 0.06 2E-06 49.4 3.0 23 17-39 5-27 (501)
329 3kta_A Chromosome segregation 92.7 0.075 2.6E-06 40.5 3.2 24 18-41 28-51 (182)
330 2yvu_A Probable adenylyl-sulfa 92.6 0.13 4.3E-06 39.5 4.5 27 15-41 12-38 (186)
331 3cm0_A Adenylate kinase; ATP-b 92.6 0.087 3E-06 40.1 3.5 23 18-40 6-28 (186)
332 2bwj_A Adenylate kinase 5; pho 92.6 0.076 2.6E-06 40.7 3.2 24 17-40 13-36 (199)
333 1n0w_A DNA repair protein RAD5 92.5 0.083 2.8E-06 41.8 3.4 23 17-39 25-47 (243)
334 3bk7_A ABC transporter ATP-bin 92.5 0.061 2.1E-06 50.3 2.9 24 17-40 118-141 (607)
335 3b5x_A Lipid A export ATP-bind 92.5 0.063 2.2E-06 49.5 3.0 24 17-40 370-393 (582)
336 1ukz_A Uridylate kinase; trans 92.5 0.11 3.8E-06 40.3 4.0 27 14-40 13-39 (203)
337 1cr0_A DNA primase/helicase; R 92.4 0.075 2.6E-06 44.1 3.1 25 17-41 36-60 (296)
338 1yqt_A RNAse L inhibitor; ATP- 92.4 0.074 2.5E-06 48.9 3.3 23 18-40 314-336 (538)
339 3ozx_A RNAse L inhibitor; ATP 92.3 0.068 2.3E-06 49.2 2.9 24 18-41 296-319 (538)
340 3b60_A Lipid A export ATP-bind 92.3 0.06 2.1E-06 49.6 2.6 24 18-41 371-394 (582)
341 2wwf_A Thymidilate kinase, put 92.3 0.085 2.9E-06 41.0 3.1 25 17-41 11-35 (212)
342 3bk7_A ABC transporter ATP-bin 92.3 0.076 2.6E-06 49.6 3.3 23 18-40 384-406 (607)
343 2yl4_A ATP-binding cassette SU 92.3 0.059 2E-06 49.8 2.5 24 18-41 372-395 (595)
344 2c95_A Adenylate kinase 1; tra 92.3 0.097 3.3E-06 40.0 3.4 24 17-40 10-33 (196)
345 3qf4_B Uncharacterized ABC tra 92.1 0.066 2.2E-06 49.6 2.6 25 17-41 382-406 (598)
346 2v54_A DTMP kinase, thymidylat 92.1 0.1 3.4E-06 40.3 3.3 24 17-40 5-28 (204)
347 2elf_A Protein translation elo 92.1 0.32 1.1E-05 42.5 6.8 20 18-37 23-42 (370)
348 1e6c_A Shikimate kinase; phosp 92.1 0.092 3.2E-06 39.4 3.0 23 18-40 4-26 (173)
349 1qf9_A UMP/CMP kinase, protein 92.0 0.098 3.4E-06 39.6 3.1 24 17-40 7-30 (194)
350 1via_A Shikimate kinase; struc 92.0 0.092 3.1E-06 39.9 2.9 23 18-40 6-28 (175)
351 1udx_A The GTP-binding protein 91.9 0.045 1.5E-06 49.0 1.2 25 15-39 156-180 (416)
352 3r20_A Cytidylate kinase; stru 91.9 0.11 3.8E-06 42.9 3.5 24 17-40 10-33 (233)
353 3j16_B RLI1P; ribosome recycli 91.9 0.091 3.1E-06 49.2 3.3 24 17-40 379-402 (608)
354 1jbk_A CLPB protein; beta barr 91.9 0.21 7.1E-06 37.0 4.8 24 18-41 45-68 (195)
355 1nn5_A Similar to deoxythymidy 91.9 0.1 3.5E-06 40.5 3.1 25 17-41 10-34 (215)
356 2pt5_A Shikimate kinase, SK; a 91.9 0.13 4.3E-06 38.5 3.5 23 18-40 2-24 (168)
357 1nlf_A Regulatory protein REPA 91.8 0.094 3.2E-06 43.2 3.0 25 17-41 31-55 (279)
358 3trf_A Shikimate kinase, SK; a 91.7 0.13 4.5E-06 39.1 3.5 24 17-40 6-29 (185)
359 3tlx_A Adenylate kinase 2; str 91.7 0.13 4.4E-06 41.8 3.6 25 16-40 29-53 (243)
360 2dpy_A FLII, flagellum-specifi 91.6 0.094 3.2E-06 47.1 3.0 24 17-40 158-181 (438)
361 1a7j_A Phosphoribulokinase; tr 91.6 0.079 2.7E-06 44.7 2.3 26 16-41 5-30 (290)
362 2obl_A ESCN; ATPase, hydrolase 91.5 0.1 3.4E-06 45.4 3.0 23 18-40 73-95 (347)
363 2dby_A GTP-binding protein; GD 91.5 0.1 3.6E-06 45.8 3.1 21 19-39 4-24 (368)
364 1ixz_A ATP-dependent metallopr 91.5 0.12 3.9E-06 41.8 3.1 22 19-40 52-73 (254)
365 4fcw_A Chaperone protein CLPB; 91.4 0.23 7.9E-06 40.8 5.0 32 10-41 41-72 (311)
366 3iij_A Coilin-interacting nucl 91.4 0.12 4E-06 39.4 2.9 24 17-40 12-35 (180)
367 2w58_A DNAI, primosome compone 91.4 0.19 6.4E-06 38.9 4.1 25 17-41 55-79 (202)
368 2grj_A Dephospho-COA kinase; T 91.3 0.13 4.6E-06 40.8 3.3 25 15-39 11-35 (192)
369 1ex7_A Guanylate kinase; subst 91.3 0.12 4.2E-06 41.1 3.0 21 19-39 4-24 (186)
370 1zuh_A Shikimate kinase; alpha 91.3 0.16 5.5E-06 38.2 3.6 26 15-40 6-31 (168)
371 1m7g_A Adenylylsulfate kinase; 91.2 0.15 5.1E-06 40.2 3.5 25 17-41 26-50 (211)
372 4a82_A Cystic fibrosis transme 91.2 0.061 2.1E-06 49.6 1.3 25 17-41 368-392 (578)
373 3qf4_A ABC transporter, ATP-bi 91.2 0.071 2.4E-06 49.3 1.8 25 17-41 370-394 (587)
374 2fna_A Conserved hypothetical 91.2 0.16 5.6E-06 41.9 3.8 24 17-40 31-54 (357)
375 3fb4_A Adenylate kinase; psych 91.2 0.15 5.3E-06 39.8 3.5 23 18-40 2-24 (216)
376 2iyv_A Shikimate kinase, SK; t 91.1 0.12 4E-06 39.5 2.7 23 18-40 4-26 (184)
377 2chg_A Replication factor C sm 91.1 0.27 9.3E-06 37.3 4.8 23 19-41 41-63 (226)
378 1in4_A RUVB, holliday junction 91.1 0.14 4.7E-06 43.6 3.3 27 14-40 49-75 (334)
379 2cdn_A Adenylate kinase; phosp 91.1 0.16 5.6E-06 39.4 3.5 23 18-40 22-44 (201)
380 2vli_A Antibiotic resistance p 90.8 0.12 4.3E-06 39.0 2.6 24 17-40 6-29 (183)
381 1vma_A Cell division protein F 90.8 0.2 6.8E-06 42.8 4.1 27 15-41 103-129 (306)
382 2j37_W Signal recognition part 90.8 0.17 5.9E-06 46.3 3.9 28 14-41 99-126 (504)
383 1w5s_A Origin recognition comp 90.7 0.2 6.9E-06 42.6 4.0 29 13-41 49-77 (412)
384 1y63_A LMAJ004144AAA protein; 90.6 0.18 6E-06 38.9 3.3 23 17-39 11-33 (184)
385 2px0_A Flagellar biosynthesis 90.6 0.15 5.1E-06 43.2 3.1 27 15-41 104-130 (296)
386 1iy2_A ATP-dependent metallopr 90.5 0.16 5.4E-06 41.7 3.1 22 19-40 76-97 (278)
387 4eaq_A DTMP kinase, thymidylat 90.5 0.19 6.5E-06 40.7 3.5 27 15-41 25-51 (229)
388 1qhl_A Protein (cell division 90.5 0.032 1.1E-06 45.9 -1.2 25 18-42 29-53 (227)
389 1pzn_A RAD51, DNA repair and r 90.5 0.16 5.3E-06 44.0 3.2 25 16-40 131-155 (349)
390 2f6r_A COA synthase, bifunctio 90.5 0.19 6.5E-06 41.9 3.6 24 15-38 74-97 (281)
391 2x8a_A Nuclear valosin-contain 90.5 0.16 5.4E-06 42.3 3.1 22 19-40 47-68 (274)
392 1zd8_A GTP:AMP phosphotransfer 90.5 0.16 5.6E-06 40.3 3.1 24 17-40 8-31 (227)
393 1yrb_A ATP(GTP)binding protein 90.4 0.24 8.1E-06 39.8 4.0 29 13-41 11-39 (262)
394 2ohf_A Protein OLA1, GTP-bindi 90.3 0.14 4.8E-06 45.6 2.8 31 7-38 14-44 (396)
395 3avx_A Elongation factor TS, e 90.3 0.47 1.6E-05 48.1 6.8 28 12-39 292-319 (1289)
396 1f2t_A RAD50 ABC-ATPase; DNA d 90.2 0.2 7E-06 37.9 3.3 25 17-41 24-48 (149)
397 3qf7_A RAD50; ABC-ATPase, ATPa 90.1 0.2 6.8E-06 43.5 3.6 26 17-42 24-49 (365)
398 3dl0_A Adenylate kinase; phosp 90.1 0.21 7.1E-06 39.1 3.4 22 19-40 3-24 (216)
399 2qby_A CDC6 homolog 1, cell di 90.0 0.17 5.7E-06 42.4 2.9 27 15-41 44-70 (386)
400 1q3t_A Cytidylate kinase; nucl 90.0 0.23 7.7E-06 39.9 3.6 26 15-40 15-40 (236)
401 1aky_A Adenylate kinase; ATP:A 90.0 0.24 8.1E-06 39.1 3.7 24 17-40 5-28 (220)
402 1svm_A Large T antigen; AAA+ f 90.0 0.19 6.4E-06 44.3 3.3 24 17-40 170-193 (377)
403 3a4m_A L-seryl-tRNA(SEC) kinas 90.0 0.25 8.7E-06 40.4 3.9 26 16-41 4-29 (260)
404 4ag6_A VIRB4 ATPase, type IV s 90.0 0.19 6.5E-06 43.5 3.3 23 19-41 38-60 (392)
405 2p65_A Hypothetical protein PF 89.9 0.3 1E-05 36.3 4.0 24 18-41 45-68 (187)
406 3ux8_A Excinuclease ABC, A sub 89.9 0.11 3.6E-06 48.7 1.7 20 18-37 350-369 (670)
407 3nwj_A ATSK2; P loop, shikimat 89.8 0.18 6.1E-06 41.8 2.9 23 18-40 50-72 (250)
408 3be4_A Adenylate kinase; malar 89.8 0.17 6E-06 40.0 2.7 25 16-40 5-29 (217)
409 3c5h_A Glucocorticoid receptor 89.7 0.16 5.4E-06 41.5 2.5 24 15-38 18-50 (255)
410 2dr3_A UPF0273 protein PH0284; 89.7 0.19 6.6E-06 39.6 2.9 24 17-40 24-47 (247)
411 2v3c_C SRP54, signal recogniti 89.4 0.19 6.4E-06 45.1 2.8 27 15-41 98-124 (432)
412 1p5z_B DCK, deoxycytidine kina 89.3 0.15 5.3E-06 41.5 2.1 27 14-40 22-48 (263)
413 1l8q_A Chromosomal replication 89.3 0.29 1E-05 40.9 3.8 34 8-41 29-62 (324)
414 2p5t_B PEZT; postsegregational 89.2 0.21 7.2E-06 40.7 2.8 25 16-40 32-56 (253)
415 1zak_A Adenylate kinase; ATP:A 89.0 0.2 7E-06 39.5 2.5 24 17-40 6-29 (222)
416 2xb4_A Adenylate kinase; ATP-b 89.0 0.3 1E-05 38.9 3.5 23 18-40 2-24 (223)
417 3d3q_A TRNA delta(2)-isopenten 88.9 0.27 9.3E-06 42.9 3.5 25 17-41 8-32 (340)
418 2iw3_A Elongation factor 3A; a 88.8 0.14 4.6E-06 50.8 1.6 24 18-41 701-724 (986)
419 1tf7_A KAIC; homohexamer, hexa 88.7 0.22 7.5E-06 45.2 2.8 20 17-36 40-59 (525)
420 1njg_A DNA polymerase III subu 88.7 0.32 1.1E-05 37.2 3.5 24 18-41 47-70 (250)
421 1sxj_E Activator 1 40 kDa subu 88.7 0.33 1.1E-05 40.7 3.8 23 19-41 39-61 (354)
422 2iw3_A Elongation factor 3A; a 88.6 0.25 8.5E-06 48.9 3.3 21 18-38 463-483 (986)
423 2ocp_A DGK, deoxyguanosine kin 88.4 0.28 9.5E-06 39.4 3.0 25 17-41 3-27 (241)
424 3mca_A HBS1, elongation factor 88.4 0.4 1.4E-05 44.5 4.5 29 11-39 172-200 (592)
425 1e4v_A Adenylate kinase; trans 88.2 0.28 9.5E-06 38.5 2.9 23 18-40 2-24 (214)
426 2qen_A Walker-type ATPase; unk 88.2 0.32 1.1E-05 40.1 3.4 23 17-39 32-54 (350)
427 1zu4_A FTSY; GTPase, signal re 88.2 0.39 1.3E-05 41.1 4.0 29 14-42 103-131 (320)
428 3kl4_A SRP54, signal recogniti 88.2 0.4 1.4E-05 43.1 4.2 28 15-42 96-123 (433)
429 3lda_A DNA repair protein RAD5 88.0 0.26 9E-06 43.7 2.8 23 16-38 178-200 (400)
430 3bos_A Putative DNA replicatio 88.0 0.38 1.3E-05 37.4 3.5 26 16-41 52-77 (242)
431 2h92_A Cytidylate kinase; ross 87.9 0.31 1.1E-05 38.1 3.0 23 18-40 5-27 (219)
432 1tf7_A KAIC; homohexamer, hexa 87.8 0.28 9.7E-06 44.4 3.0 25 17-41 282-306 (525)
433 2v1u_A Cell division control p 87.8 0.35 1.2E-05 40.5 3.4 28 14-41 42-69 (387)
434 3qks_A DNA double-strand break 87.8 0.41 1.4E-05 37.9 3.6 26 17-42 24-49 (203)
435 4f4c_A Multidrug resistance pr 87.8 0.17 5.8E-06 51.2 1.6 23 18-40 1107-1129(1321)
436 1fnn_A CDC6P, cell division co 87.6 0.38 1.3E-05 40.4 3.5 24 18-41 46-69 (389)
437 1ak2_A Adenylate kinase isoenz 87.6 0.41 1.4E-05 38.2 3.5 24 17-40 17-40 (233)
438 3cr8_A Sulfate adenylyltranfer 87.6 0.2 7E-06 46.3 1.9 25 17-41 370-394 (552)
439 4f4c_A Multidrug resistance pr 87.5 0.24 8.1E-06 50.2 2.5 25 17-41 445-469 (1321)
440 1w1w_A Structural maintenance 87.5 0.35 1.2E-05 42.5 3.3 25 17-41 27-51 (430)
441 3g5u_A MCG1178, multidrug resi 87.4 0.24 8.1E-06 50.1 2.4 25 17-41 417-441 (1284)
442 1ltq_A Polynucleotide kinase; 87.3 0.39 1.4E-05 39.5 3.4 23 17-39 3-25 (301)
443 1gvn_B Zeta; postsegregational 87.2 0.41 1.4E-05 40.1 3.5 25 16-40 33-57 (287)
444 1lv7_A FTSH; alpha/beta domain 87.2 0.38 1.3E-05 38.7 3.1 22 19-40 48-69 (257)
445 1j8m_F SRP54, signal recogniti 86.6 0.84 2.9E-05 38.6 5.1 26 16-41 98-123 (297)
446 3dm5_A SRP54, signal recogniti 86.5 0.63 2.1E-05 42.0 4.4 28 15-42 99-126 (443)
447 3qkt_A DNA double-strand break 86.4 0.48 1.6E-05 40.4 3.5 25 17-41 24-48 (339)
448 1e69_A Chromosome segregation 86.2 0.39 1.3E-05 40.6 2.8 22 18-39 26-47 (322)
449 2qgz_A Helicase loader, putati 86.2 0.64 2.2E-05 39.3 4.1 25 17-41 153-177 (308)
450 3g5u_A MCG1178, multidrug resi 86.0 0.35 1.2E-05 48.8 2.8 23 18-40 1061-1083(1284)
451 1wb9_A DNA mismatch repair pro 85.9 0.45 1.5E-05 45.9 3.4 23 17-39 608-630 (800)
452 3eph_A TRNA isopentenyltransfe 85.9 0.51 1.7E-05 42.3 3.5 25 17-41 3-27 (409)
453 3exa_A TRNA delta(2)-isopenten 85.9 0.5 1.7E-05 41.1 3.4 23 18-40 5-27 (322)
454 1ewq_A DNA mismatch repair pro 85.8 0.46 1.6E-05 45.6 3.3 24 17-40 577-600 (765)
455 4aby_A DNA repair protein RECN 85.7 0.14 4.9E-06 44.3 -0.2 23 18-40 62-84 (415)
456 3ch4_B Pmkase, phosphomevalona 85.7 0.57 2E-05 38.0 3.4 28 13-40 8-35 (202)
457 1ls1_A Signal recognition part 85.4 0.59 2E-05 39.3 3.5 27 15-41 97-123 (295)
458 3foz_A TRNA delta(2)-isopenten 85.1 0.58 2E-05 40.6 3.4 24 17-40 11-34 (316)
459 3hr8_A Protein RECA; alpha and 85.1 0.53 1.8E-05 41.2 3.2 25 17-41 62-86 (356)
460 1jny_A EF-1-alpha, elongation 84.9 0.6 2.1E-05 41.3 3.5 26 14-39 4-29 (435)
461 1of1_A Thymidine kinase; trans 84.7 0.54 1.9E-05 41.6 3.1 33 9-41 42-74 (376)
462 3crm_A TRNA delta(2)-isopenten 84.7 0.63 2.2E-05 40.2 3.4 24 17-40 6-29 (323)
463 4edh_A DTMP kinase, thymidylat 84.6 0.77 2.6E-05 36.9 3.7 26 17-42 7-32 (213)
464 1z6t_A APAF-1, apoptotic prote 84.4 1.1 3.6E-05 40.4 4.9 30 9-38 140-169 (591)
465 1r5b_A Eukaryotic peptide chai 84.3 0.5 1.7E-05 42.3 2.7 25 14-38 41-65 (467)
466 2ius_A DNA translocase FTSK; n 84.3 0.56 1.9E-05 43.1 3.0 22 19-40 170-191 (512)
467 3fdi_A Uncharacterized protein 84.2 0.67 2.3E-05 36.7 3.2 23 18-40 8-30 (201)
468 3a8t_A Adenylate isopentenyltr 83.9 0.65 2.2E-05 40.6 3.2 25 17-41 41-65 (339)
469 3zvl_A Bifunctional polynucleo 83.8 0.86 2.9E-05 40.1 4.0 25 15-39 257-281 (416)
470 2xxa_A Signal recognition part 83.8 0.96 3.3E-05 40.4 4.3 29 14-42 98-126 (433)
471 3ux8_A Excinuclease ABC, A sub 83.7 0.5 1.7E-05 44.1 2.5 17 17-33 45-61 (670)
472 2o5v_A DNA replication and rep 83.7 0.72 2.5E-05 40.3 3.4 24 17-40 27-50 (359)
473 3b9p_A CG5977-PA, isoform A; A 83.1 0.69 2.4E-05 37.8 2.9 26 15-40 53-78 (297)
474 1sxj_C Activator 1 40 kDa subu 82.9 1.4 4.8E-05 37.0 4.8 24 19-42 49-72 (340)
475 2orw_A Thymidine kinase; TMTK, 82.5 0.81 2.8E-05 35.7 3.0 22 18-39 5-26 (184)
476 1e9r_A Conjugal transfer prote 82.3 0.74 2.5E-05 40.2 2.9 23 19-41 56-78 (437)
477 3lv8_A DTMP kinase, thymidylat 82.3 0.84 2.9E-05 37.4 3.1 26 17-42 28-53 (236)
478 3ld9_A DTMP kinase, thymidylat 82.2 1.1 3.7E-05 36.6 3.7 28 15-42 20-47 (223)
479 3v9p_A DTMP kinase, thymidylat 82.1 0.81 2.8E-05 37.3 2.9 26 17-42 26-51 (227)
480 3pfi_A Holliday junction ATP-d 82.1 0.95 3.3E-05 37.7 3.4 27 14-40 53-79 (338)
481 1sxj_D Activator 1 41 kDa subu 82.0 1.7 5.9E-05 36.0 5.0 23 19-41 61-83 (353)
482 2qby_B CDC6 homolog 3, cell di 82.0 1.1 3.9E-05 37.6 3.9 26 16-41 45-70 (384)
483 2z4s_A Chromosomal replication 81.8 1.2 4E-05 39.6 4.0 26 16-41 130-155 (440)
484 3syl_A Protein CBBX; photosynt 81.8 1.1 3.9E-05 36.6 3.8 30 13-42 64-93 (309)
485 4tmk_A Protein (thymidylate ki 81.8 0.94 3.2E-05 36.5 3.1 25 18-42 5-29 (213)
486 2ga8_A Hypothetical 39.9 kDa p 81.7 1.4 5E-05 38.7 4.5 40 2-41 8-49 (359)
487 1u0j_A DNA replication protein 81.7 1.7 5.9E-05 36.6 4.9 35 5-39 93-127 (267)
488 2ffh_A Protein (FFH); SRP54, s 81.6 1.1 3.8E-05 40.0 3.9 28 15-42 97-124 (425)
489 3vqt_A RF-3, peptide chain rel 81.5 1.9 6.6E-05 39.5 5.5 112 15-149 30-150 (548)
490 4hlc_A DTMP kinase, thymidylat 81.5 1.2 4.2E-05 35.4 3.7 25 17-41 3-27 (205)
491 1tue_A Replication protein E1; 81.3 1.5 5.1E-05 35.9 4.2 35 7-42 50-84 (212)
492 1dek_A Deoxynucleoside monopho 81.2 0.98 3.4E-05 37.3 3.1 23 17-39 2-24 (241)
493 3h4m_A Proteasome-activating n 81.2 1 3.5E-05 36.5 3.2 23 18-40 53-75 (285)
494 3upu_A ATP-dependent DNA helic 81.1 0.8 2.7E-05 40.6 2.7 25 18-42 47-71 (459)
495 3cf0_A Transitional endoplasmi 81.0 1.1 3.8E-05 37.3 3.4 26 15-40 48-73 (301)
496 2qmh_A HPR kinase/phosphorylas 80.7 1.2 4E-05 36.4 3.4 22 18-39 36-57 (205)
497 2qz4_A Paraplegin; AAA+, SPG7, 80.5 1.1 3.8E-05 35.5 3.2 22 19-40 42-63 (262)
498 1c9k_A COBU, adenosylcobinamid 80.4 0.83 2.8E-05 36.2 2.3 20 19-38 2-21 (180)
499 3n70_A Transport activator; si 80.0 1 3.5E-05 33.2 2.6 21 19-39 27-47 (145)
500 2r62_A Cell division protease 80.0 0.86 2.9E-05 36.7 2.4 22 19-40 47-68 (268)
No 1
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=100.00 E-value=1.5e-53 Score=389.33 Aligned_cols=180 Identities=58% Similarity=0.878 Sum_probs=166.8
Q ss_pred cHHHHH-HhcC---CCCCceEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceE
Q psy5032 2 AEYVKV-THRR---PSDNDSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGI 77 (193)
Q Consensus 2 ~e~~~~-~~~~---~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GI 77 (193)
.|+|+. +++. +++||+||||+|++|+|||||||+|++++.+ ++..+|+++.+++..||+|+++++|||+||
T Consensus 49 n~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~~~~~-----~~~~~w~~~~~~~~~gF~~~~~~~~~TkGI 123 (457)
T 4ido_A 49 DETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYN-----QESVDWVGDYNEPLTGFSWRGGSERETTGI 123 (457)
T ss_dssp CHHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHHHHHC-----TTCTTTTCCTTCCCCSSCCCCSSSCCCCSE
T ss_pred CHHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHHHhhc-----ccccccccccccCCCCceeCCCCCCcCceE
Confidence 588988 7765 6899999999999999999999999998765 356789998888899999999999999999
Q ss_pred EEeeccceecCCCCCccEEEEEecccccCccccccchhHHHHHHHhhhceEEEeCcccCChhHHHHHHHHHHHHHhhhhc
Q psy5032 78 LMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALAD 157 (193)
Q Consensus 78 wmw~~p~~~~~~~g~~~~vlllDTEG~~~~~~~~~~d~~if~L~~LLSS~~IyN~~~~i~~~~l~~L~l~~~~~~~~~~~ 157 (193)
|||++|++++.|+|++++|+||||||++|.+++.++|++||+|++||||++|||+++.|++++|++|++|++++++++++
T Consensus 124 Wmw~~p~~~~~~~g~~~~vlllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~i~~~~L~~L~~~tel~~~i~~~ 203 (457)
T 4ido_A 124 QIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEE 203 (457)
T ss_dssp EEESSCEEEECTTSCEEEEEEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESSCCHHHHHHHHHHHHHHHHHSCC
T ss_pred EEecCcccccCCCCCeeEEEEEeccCCCCcccCccccHHHHHHHHHHhhheeecccccCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCCceEEEEEcCCCcCCCccccccCC
Q psy5032 158 TGTKPFQRLQFLAVNNNNPFRSPVQVQLTG 187 (193)
Q Consensus 158 ~~~~~fp~l~wlvRD~~~~~~~~~G~~~t~ 187 (193)
.+..+||+|+||||||+++++++.| .+|+
T Consensus 204 ~~~~~Fp~f~wlvRDf~l~l~~~~g-~~t~ 232 (457)
T 4ido_A 204 TFLKPFQSLIFLVRDWSFPYEFSYG-ADGG 232 (457)
T ss_dssp CSSCSEEEEEEEEETCCCTTTSCSB-HHHH
T ss_pred cccccCCceEEEEecCCccccccCC-CCCH
Confidence 8889999999999999999987655 4553
No 2
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=100.00 E-value=7.4e-49 Score=358.06 Aligned_cols=176 Identities=59% Similarity=0.896 Sum_probs=164.9
Q ss_pred cHHHH-HHhcC---CCCCceEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceE
Q psy5032 2 AEYVK-VTHRR---PSDNDSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGI 77 (193)
Q Consensus 2 ~e~~~-~~~~~---~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GI 77 (193)
.|+|+ .+++. ++.||+||||+|++|+|||||||+|++++++ ++.++|++++++...+|+|++++++||+||
T Consensus 49 ~~eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~~~~-----~~~~~wl~~~~~~~~~f~~~~t~~~~T~GI 123 (447)
T 3q5d_A 49 DETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYN-----QESVDWVGDYNEPLTGFSWRGGSERETTGI 123 (447)
T ss_dssp CHHHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHHHHC-----CSTTTSSCCTTSBCCSSCSCCSSCCCCCEE
T ss_pred CHHHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhhccc-----ccccccccccccccceecCCCCCCCceeEE
Confidence 57889 47776 6899999999999999999999999998875 468899998888899999999999999999
Q ss_pred EEeeccceecCCCCCccEEEEEecccccCccccccchhHHHHHHHhhhceEEEeCcccCChhHHHHHHHHHHHHHhhhhc
Q psy5032 78 LMWSHVYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALAD 157 (193)
Q Consensus 78 wmw~~p~~~~~~~g~~~~vlllDTEG~~~~~~~~~~d~~if~L~~LLSS~~IyN~~~~i~~~~l~~L~l~~~~~~~~~~~ 157 (193)
|||++|+.++.|+|++++|+||||||+++.+++.++|++||+|+++|||++|||+++.|+++++++|++|++++++++++
T Consensus 124 w~~~~p~~~~~~~~~~~~vvllDTeG~~~~~~~~~~d~~ifal~~lLSs~~IyN~~~~i~~~~l~~L~~~~e~~~~~~~~ 203 (447)
T 3q5d_A 124 QIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEE 203 (447)
T ss_dssp EEESSCEEEECSSSCEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHCSEEEEEESSSCCHHHHHHHHHHHHHHHHTSCC
T ss_pred EEecCccccccCCCCcceEEEEcCCcccccccchhhhHHHHHHHHHHhhHHHHhhcccccHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCCCCceEEEEEcCCCcCCCccc
Q psy5032 158 TGTKPFQRLQFLAVNNNNPFRSPVQ 182 (193)
Q Consensus 158 ~~~~~fp~l~wlvRD~~~~~~~~~G 182 (193)
....+||+|+||||||+++++++.|
T Consensus 204 ~~~~~fp~l~wvvRD~~~~l~~~~g 228 (447)
T 3q5d_A 204 TFLKPFQSLIFLVRDWSFPYEFSYG 228 (447)
T ss_dssp CSSCSEEEEEEEEEEECCTTTSCSB
T ss_pred hcccCCCceEEEEeeccccccccCC
Confidence 7789999999999999999988766
No 3
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.97 E-value=1e-31 Score=252.11 Aligned_cols=160 Identities=23% Similarity=0.262 Sum_probs=139.8
Q ss_pred cHHHHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEee
Q psy5032 2 AEYVKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWS 81 (193)
Q Consensus 2 ~e~~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~ 81 (193)
.++|+.+++.++.|+.+|+|+|++++|||+|+|.|++. ..+|+++++..+||+|||+|+
T Consensus 24 ~~eal~~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~---------------------~~~~~~~~tt~~~T~gi~~~~ 82 (592)
T 1f5n_A 24 NPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGK---------------------KKGFSLGSTVQSHTKGIWMWC 82 (592)
T ss_dssp CHHHHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTC---------------------SSCSCCCCSSSCCCCSEEEEE
T ss_pred CHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHhHcCC---------------------CCccccCCCCCCceeEEEEee
Confidence 47889999999999999999999999999999999972 246788888999999999998
Q ss_pred ccceecCCCCCccEEEEEecccccCccc-cccchhHHHHHHHhhhceEEEeCcccCChhHHHHHHHHHHHHHhhhhcC--
Q psy5032 82 HVYIATLPTGEKAAVILLDTQGTFDSES-TVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEYGRLALADT-- 158 (193)
Q Consensus 82 ~p~~~~~~~g~~~~vlllDTEG~~~~~~-~~~~d~~if~L~~LLSS~~IyN~~~~i~~~~l~~L~l~~~~~~~~~~~~-- 158 (193)
.|+ +......++|+||||+.+... +..+++.+|++++++||++|||+.+.|++++++.|+++.++++.++.+.
T Consensus 83 ~~~----~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~~~~l~~k~~~ 158 (592)
T 1f5n_A 83 VPH----PKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSP 158 (592)
T ss_dssp EEC----SSSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTHHHHCBSCCC-
T ss_pred ccc----ccCCCceEEEecCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHHhhhhhcccCc
Confidence 886 334456799999999999876 6778999999999999999999999999999999999999998775431
Q ss_pred ------------CCCCCCceEEEEEcCCCcCCCccccccCC
Q psy5032 159 ------------GTKPFQRLQFLAVNNNNPFRSPVQVQLTG 187 (193)
Q Consensus 159 ------------~~~~fp~l~wlvRD~~~~~~~~~G~~~t~ 187 (193)
...+||+|+||||||+++++ .+|+++|+
T Consensus 159 ~~~~~~~~~~~~~~~~fP~~~wvvRD~~l~~~-~~g~~~t~ 198 (592)
T 1f5n_A 159 DENENEVEDSADFVSFFPDFVWTLRDFSLDLE-ADGQPLTP 198 (592)
T ss_dssp ------CCGGGGHHHHCCEEEEEEETCCCCCC-CSSSCCCH
T ss_pred ccccccccchhhhhccCCceEEEEecccchhc-cCCCCCCH
Confidence 13579999999999999987 45888875
No 4
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.15 E-value=1.6e-05 Score=64.66 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=22.2
Q ss_pred cCCCCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 10 RRPSDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 10 ~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+....+..-|.++|+.++|||+|+|.|++
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHcC
Confidence 33444566799999999999999999997
No 5
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.09 E-value=1.7e-05 Score=65.60 Aligned_cols=101 Identities=21% Similarity=0.184 Sum_probs=55.4
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecC----CCCcccceEEEeeccceecCCCC
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRG----GSERDTTGILMWSHVYIATLPTG 91 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~----~~~~~T~GIwmw~~p~~~~~~~g 91 (193)
-.-|.++|..++|||+|+|.|++. ..|..+. ....|..+..-| +
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~----------------------~~~~~~~~~~~~T~~~~~~~~~~---------~- 68 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ----------------------RRFFSRLGATSVTRACTTGSRRW---------D- 68 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS----------------------CCC---------CCSCEEEEEEE---------T-
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC----------------------CCccccCCCCCccccEEEEEEEE---------C-
Confidence 345889999999999999999973 1222211 223344454433 2
Q ss_pred CccEEEEEecccccCccccc--cchhHHH-HH--HHhhhc--eEEEeCcccCChhHHHHHHHHHHH
Q psy5032 92 EKAAVILLDTQGTFDSESTV--RDCATVF-AL--STMLSS--IQIYNLSQNIQEDDLQHLQLFTEY 150 (193)
Q Consensus 92 ~~~~vlllDTEG~~~~~~~~--~~d~~if-~L--~~LLSS--~~IyN~~~~i~~~~l~~L~l~~~~ 150 (193)
...+.++||+|+.+..... +....+. ++ +.--.. ++++... .+.+.+...++.+.++
T Consensus 69 -~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~ 132 (247)
T 3lxw_A 69 -KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQVRDM 132 (247)
T ss_dssp -TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHHHHH
T ss_pred -CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCC-CCCHHHHHHHHHHHHH
Confidence 2458999999998765432 1111221 11 111122 3455554 3666666656655553
No 6
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.05 E-value=4.7e-05 Score=62.48 Aligned_cols=25 Identities=20% Similarity=0.092 Sum_probs=21.9
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+..-|.|+|..++|||+|+|.|++
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC
Confidence 3556789999999999999999997
No 7
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.92 E-value=9.4e-05 Score=58.51 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=23.1
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
...+...|.|+|..++|||+|+|.|++
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 344566789999999999999999997
No 8
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.81 E-value=0.00028 Score=53.92 Aligned_cols=26 Identities=23% Similarity=0.144 Sum_probs=22.4
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..+..-|.|+|+.++|||+|+|.|++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHc
Confidence 34556788999999999999999997
No 9
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.77 E-value=0.00043 Score=55.43 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=39.6
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCc
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEK 93 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~ 93 (193)
.+..-|.|+|..++|||+|+|.|++. .|...+ ....|+.+-...... +.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~-----------------------~~~~~~-~~~~t~~~~~~~~~~-------~~ 75 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA-----------------------NVDVQS-YSFTTKNLYVGHFDH-------KL 75 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT-----------------------CEEEEC-C-----CEEEEEEEE-------TT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC-----------------------CCccCC-CCCcceeeeeeeeec-------CC
Confidence 45677899999999999999999962 233221 233455554332111 23
Q ss_pred cEEEEEecccccCc
Q psy5032 94 AAVILLDTQGTFDS 107 (193)
Q Consensus 94 ~~vlllDTEG~~~~ 107 (193)
..+.++||+|..+.
T Consensus 76 ~~~~l~DtpG~~~~ 89 (228)
T 2qu8_A 76 NKYQIIDTPGLLDR 89 (228)
T ss_dssp EEEEEEECTTTTTS
T ss_pred CeEEEEECCCCcCc
Confidence 56899999999754
No 10
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.77 E-value=0.00016 Score=61.76 Aligned_cols=27 Identities=26% Similarity=0.065 Sum_probs=24.0
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+.|-..|+|+|...+|||+|+|.|++
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhC
Confidence 345788999999999999999999997
No 11
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.73 E-value=0.00031 Score=54.06 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.4
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+.+..-|.|+|+.++|||+|+|.|++
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344567789999999999999999997
No 12
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.67 E-value=0.00015 Score=53.84 Aligned_cols=21 Identities=33% Similarity=0.241 Sum_probs=19.5
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-|.|+|+.++|||+|+|+|.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999997
No 13
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.65 E-value=0.00025 Score=59.12 Aligned_cols=22 Identities=23% Similarity=0.057 Sum_probs=19.9
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.=|.|+|..++|||+|+|.|++
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3488999999999999999986
No 14
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.59 E-value=0.00014 Score=62.21 Aligned_cols=24 Identities=29% Similarity=0.133 Sum_probs=21.8
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+-..|+|+|...+|||+|+|+|++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999997
No 15
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.49 E-value=0.0012 Score=54.64 Aligned_cols=26 Identities=15% Similarity=-0.029 Sum_probs=22.5
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..+-.-|.++|..++|||+|+|.|++
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhC
Confidence 34456788999999999999999997
No 16
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.45 E-value=0.00028 Score=60.06 Aligned_cols=25 Identities=28% Similarity=0.042 Sum_probs=22.4
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+-.+|+|+|+..+|||+|+|.|++.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4458999999999999999999973
No 17
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.41 E-value=0.00027 Score=61.23 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.5
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..+--|.|+|.+++|||+|+|.|.+
T Consensus 32 ~~lp~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 32 DSLPAIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CCCCEEEEECBTTSSHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCcHHHHHHHHhC
Confidence 3555899999999999999999998
No 18
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.40 E-value=0.00039 Score=51.68 Aligned_cols=21 Identities=19% Similarity=0.007 Sum_probs=19.5
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
=|.|+|+.++|||+|+|.|++
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999997
No 19
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.37 E-value=0.00047 Score=51.36 Aligned_cols=22 Identities=18% Similarity=0.001 Sum_probs=20.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.-|.|+|+.++|||+|+|.|.+
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4588999999999999999997
No 20
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.36 E-value=0.00037 Score=52.38 Aligned_cols=22 Identities=18% Similarity=0.024 Sum_probs=20.0
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.-|.|+|+.++|||+|+|.|++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4588999999999999999996
No 21
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.36 E-value=0.0004 Score=52.39 Aligned_cols=24 Identities=21% Similarity=-0.036 Sum_probs=21.3
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|.|+|+.++|||+|+|.|++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 445689999999999999999997
No 22
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.35 E-value=0.0049 Score=47.47 Aligned_cols=29 Identities=21% Similarity=-0.098 Sum_probs=23.2
Q ss_pred cCCCCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 10 RRPSDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 10 ~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..+.+..-|.|+|+.++|||+|+|.|++
T Consensus 8 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 8 GQNSLALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp ---CCCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHh
Confidence 34445667799999999999999999997
No 23
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.35 E-value=0.00052 Score=51.85 Aligned_cols=24 Identities=21% Similarity=-0.047 Sum_probs=21.3
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|.++|+.++|||+|+|.|++
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 445689999999999999999997
No 24
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.33 E-value=0.00044 Score=51.51 Aligned_cols=21 Identities=24% Similarity=0.091 Sum_probs=19.4
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-|.|+|+.++|||+|+|.|++
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999996
No 25
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.32 E-value=0.00049 Score=51.41 Aligned_cols=23 Identities=17% Similarity=-0.141 Sum_probs=20.6
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-.-|.|+|+.++|||+|+|+|++
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 34588999999999999999997
No 26
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.31 E-value=0.00057 Score=50.79 Aligned_cols=22 Identities=23% Similarity=0.019 Sum_probs=20.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.-|.|+|+.++|||+|+|.|.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4588999999999999999997
No 27
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.31 E-value=0.00051 Score=56.84 Aligned_cols=25 Identities=20% Similarity=-0.015 Sum_probs=22.0
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+-.-|.++|..++|||+|+|.|++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3456688999999999999999997
No 28
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.31 E-value=0.00072 Score=52.48 Aligned_cols=26 Identities=15% Similarity=-0.019 Sum_probs=22.1
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..+..-|.|+|+.++|||+|+|.|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHc
Confidence 34567799999999999999999997
No 29
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.29 E-value=0.00064 Score=50.21 Aligned_cols=21 Identities=24% Similarity=0.004 Sum_probs=19.6
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-|.|+|+.++|||+|+|.|.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999999997
No 30
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.28 E-value=0.00035 Score=51.98 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=20.4
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..-|.|+|+.++|||+|+|.|++
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 34478999999999999999997
No 31
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.25 E-value=0.00067 Score=56.83 Aligned_cols=26 Identities=15% Similarity=0.052 Sum_probs=23.2
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.++-.|+|+|.+.+|||+|+|.|++.
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 45668999999999999999999984
No 32
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.22 E-value=0.00064 Score=51.15 Aligned_cols=25 Identities=28% Similarity=-0.031 Sum_probs=22.0
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+..=|.|+|+.++|||+|+|.|.+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 4556689999999999999999986
No 33
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.22 E-value=0.00097 Score=50.76 Aligned_cols=24 Identities=21% Similarity=0.021 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
..-|.|+|+.++|||+|+|.|++.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999999973
No 34
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.22 E-value=0.00083 Score=49.66 Aligned_cols=22 Identities=23% Similarity=-0.032 Sum_probs=19.9
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.=|.|+|+.++|||+|+|.|++
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3478999999999999999997
No 35
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.20 E-value=0.00059 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.062 Sum_probs=21.6
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|.|+|+.++|||+|+|+|++
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 456689999999999999999997
No 36
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.20 E-value=0.00085 Score=56.85 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=20.0
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.-|.++|....|||+|+|.|.+
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred ceEEEEecCCCchHHHHHHHhc
Confidence 4578999999999999999997
No 37
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.19 E-value=0.0014 Score=48.59 Aligned_cols=21 Identities=24% Similarity=0.018 Sum_probs=19.5
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
=|.|+|+.++|||+|+|.|.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999997
No 38
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.18 E-value=0.00043 Score=53.41 Aligned_cols=64 Identities=19% Similarity=0.079 Sum_probs=34.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEE
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVI 97 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vl 97 (193)
-|.|+|+.++|||+|+|.|.+.. ..|. +....|.|+-.....+.....+++.+.+-
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~---------------------~~~~---~~~~~t~g~~~~~~~~~~~~~~~~~~~~~ 59 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK---------------------KSDL---GMQSATVGIDVKDWPIQIRDKRKRDLVLN 59 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-----------------------------------CSEEEEEEEC---------CEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCC---------------------CccC---CCcceeccEEeEEeeeccccCCCCceEEE
Confidence 37899999999999999999620 1121 12234566654433332211234567788
Q ss_pred EEeccccc
Q psy5032 98 LLDTQGTF 105 (193)
Q Consensus 98 llDTEG~~ 105 (193)
+.||.|..
T Consensus 60 i~Dt~G~~ 67 (184)
T 2zej_A 60 VWDFAGRE 67 (184)
T ss_dssp EEEECSHH
T ss_pred EEecCCCH
Confidence 99999964
No 39
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.16 E-value=0.00075 Score=64.07 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=22.6
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+-.-|.|+|.+++|||+|+|.|++.
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999999973
No 40
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.16 E-value=0.0012 Score=48.63 Aligned_cols=21 Identities=33% Similarity=0.079 Sum_probs=19.4
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-|.++|+.++|||+|+|.|++
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999997
No 41
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.15 E-value=0.001 Score=50.92 Aligned_cols=23 Identities=26% Similarity=-0.045 Sum_probs=20.7
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-.-|.|+|+.++|||+|+|+|.+
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35688999999999999999997
No 42
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.14 E-value=0.0014 Score=50.51 Aligned_cols=24 Identities=25% Similarity=0.004 Sum_probs=21.5
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|.|+|+.++|||+|+|.|.+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhc
Confidence 455689999999999999999997
No 43
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.14 E-value=0.0011 Score=50.32 Aligned_cols=21 Identities=33% Similarity=0.090 Sum_probs=19.6
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
=|.|+|+.++|||+|+|.|++
T Consensus 6 ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999997
No 44
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.12 E-value=0.00074 Score=50.83 Aligned_cols=25 Identities=20% Similarity=0.029 Sum_probs=21.9
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+..-|.|+|+.++|||+|+|.|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 4566789999999999999999997
No 45
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.12 E-value=0.0011 Score=50.51 Aligned_cols=24 Identities=25% Similarity=0.047 Sum_probs=21.3
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|.|+|+.++|||+|+|.|++
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 345688999999999999999997
No 46
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.11 E-value=0.00082 Score=50.01 Aligned_cols=22 Identities=27% Similarity=0.061 Sum_probs=20.0
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.-|.|+|+.++|||+|+|.|++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3488999999999999999997
No 47
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.10 E-value=0.001 Score=51.12 Aligned_cols=25 Identities=16% Similarity=-0.106 Sum_probs=21.6
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+..-|.|+|..++|||+|+|+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 3456689999999999999999997
No 48
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.09 E-value=0.0012 Score=51.25 Aligned_cols=24 Identities=17% Similarity=-0.178 Sum_probs=21.2
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..=|.|+|+.++|||+|+|.|++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999999996
No 49
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.09 E-value=0.0012 Score=51.16 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=20.7
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-.-|.|+|+.++|||+|+|.|++
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 44589999999999999999997
No 50
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.05 E-value=0.0016 Score=49.31 Aligned_cols=24 Identities=17% Similarity=-0.127 Sum_probs=21.2
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..=|.|+|+.++|||+|+|.|++
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhc
Confidence 345588999999999999999997
No 51
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.05 E-value=0.0022 Score=49.68 Aligned_cols=23 Identities=13% Similarity=0.030 Sum_probs=20.4
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..-|.|+|..++|||+|+|+|.+
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 44588999999999999999986
No 52
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.04 E-value=0.0087 Score=46.17 Aligned_cols=24 Identities=25% Similarity=0.095 Sum_probs=21.2
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+-.=|.|+|..++|||+|+|+|.+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 445588999999999999999997
No 53
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.04 E-value=0.00091 Score=50.52 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=21.1
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|.|+|+.++|||+|+|+|++
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 345588999999999999999997
No 54
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.03 E-value=0.01 Score=51.33 Aligned_cols=26 Identities=23% Similarity=0.011 Sum_probs=23.2
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+.+...|.++|+.++|||+|+|.|.+
T Consensus 164 ~~~~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 164 DLEIPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp CSSSCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34667899999999999999999997
No 55
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.02 E-value=0.0014 Score=54.41 Aligned_cols=24 Identities=13% Similarity=-0.014 Sum_probs=21.5
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+...|+++|+.++|||+|+|.|.+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhC
Confidence 345789999999999999999997
No 56
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.02 E-value=0.018 Score=43.56 Aligned_cols=74 Identities=12% Similarity=-0.053 Sum_probs=42.5
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCcc
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKA 94 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~ 94 (193)
+..=|.|+|+.++|||+|+|++.+.....+ . ....++ ......|.|+-.....+ ...+++.+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~---~----------~~~~~~---~~~~~~t~~~~~~~~~~--~~~~~~~~ 74 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGR---K----------GEMVSL---ATEDERTLFFDFLPLDI--GEVKGFKT 74 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGG---B----------CCCEEE---ECSSCEEEEEEECCSSC--CCSSSCEE
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccc---c----------cccccc---ccccccceeeeeccccc--ccccCCce
Confidence 445688999999999999988876321100 0 000000 01123466665443322 11255667
Q ss_pred EEEEEecccccC
Q psy5032 95 AVILLDTQGTFD 106 (193)
Q Consensus 95 ~vlllDTEG~~~ 106 (193)
.+.+.||+|...
T Consensus 75 ~~~i~Dt~G~~~ 86 (198)
T 3t1o_A 75 RFHLYTVPGQVF 86 (198)
T ss_dssp EEEEEECCSCCS
T ss_pred EEEEEeCCChHH
Confidence 899999999653
No 57
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.01 E-value=0.0016 Score=49.11 Aligned_cols=24 Identities=21% Similarity=-0.089 Sum_probs=21.5
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|.|+|+.++|||+|+|.|++
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhh
Confidence 455688999999999999999997
No 58
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.00 E-value=0.0025 Score=53.00 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=19.6
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.|+++|...+|||+|+|.|.+
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 578999999999999999997
No 59
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.99 E-value=0.0026 Score=47.73 Aligned_cols=26 Identities=19% Similarity=0.035 Sum_probs=22.6
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+.+..-|.|+|..++|||+|+|.|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHh
Confidence 34556789999999999999999997
No 60
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.99 E-value=0.0018 Score=50.40 Aligned_cols=24 Identities=17% Similarity=-0.040 Sum_probs=21.7
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|.|+|..++|||+|+|.|.+
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCcCHHHHHHHHHh
Confidence 456689999999999999999997
No 61
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.99 E-value=0.0041 Score=47.69 Aligned_cols=23 Identities=26% Similarity=0.093 Sum_probs=20.6
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-.-|.|+|+.++|||+|+|.|.+
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 34588999999999999999997
No 62
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.98 E-value=0.0026 Score=48.73 Aligned_cols=22 Identities=32% Similarity=0.158 Sum_probs=20.0
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.-|.++|+.++|||+|+|.|.+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999997
No 63
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.98 E-value=0.0024 Score=48.93 Aligned_cols=25 Identities=28% Similarity=-0.040 Sum_probs=22.2
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+..-|.|+|+.++|||+|+|+|++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc
Confidence 3456689999999999999999997
No 64
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.97 E-value=0.0012 Score=51.45 Aligned_cols=24 Identities=25% Similarity=0.016 Sum_probs=21.0
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|.|+|+.++|||+|+|.|++
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 455689999999999999999996
No 65
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.97 E-value=0.0023 Score=49.14 Aligned_cols=26 Identities=23% Similarity=-0.079 Sum_probs=22.6
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.....-|.|+|+.++|||+|+|+|.+
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHc
Confidence 34456789999999999999999997
No 66
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.96 E-value=0.0021 Score=48.13 Aligned_cols=24 Identities=13% Similarity=-0.058 Sum_probs=21.1
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|.|+|+.++|||+|+|+|.+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 345689999999999999999986
No 67
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.94 E-value=0.0039 Score=52.06 Aligned_cols=22 Identities=18% Similarity=0.060 Sum_probs=20.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..|+++|...+|||+|+|.|.+
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTG 25 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3588999999999999999997
No 68
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.94 E-value=0.0019 Score=50.30 Aligned_cols=24 Identities=29% Similarity=0.018 Sum_probs=22.1
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
....|+|+|+.++|||+|+|.|.+
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhc
Confidence 457899999999999999999997
No 69
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.92 E-value=0.0014 Score=51.00 Aligned_cols=23 Identities=26% Similarity=-0.104 Sum_probs=20.8
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..-|.|+|+.++|||+|+|.|.+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45688999999999999999997
No 70
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.91 E-value=0.0024 Score=55.30 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=25.5
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-.+-.+|+++|+.++|||+|+|.|.+.+.
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 35678999999999999999999998754
No 71
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.91 E-value=0.0022 Score=50.71 Aligned_cols=24 Identities=17% Similarity=-0.071 Sum_probs=21.5
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|.|+|+.++|||+|+|+|.+
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 455688999999999999999997
No 72
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.91 E-value=0.0013 Score=49.03 Aligned_cols=22 Identities=23% Similarity=-0.084 Sum_probs=19.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.=|.++|+.++|||+|+|.|.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3478999999999999999985
No 73
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.91 E-value=0.0022 Score=49.04 Aligned_cols=22 Identities=32% Similarity=0.046 Sum_probs=20.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.-|.|+|..++|||+|+|.|++
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4578999999999999999997
No 74
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.89 E-value=0.0025 Score=47.44 Aligned_cols=22 Identities=18% Similarity=-0.070 Sum_probs=20.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.-|.|+|+.++|||+|+|+|.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4588999999999999999986
No 75
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.88 E-value=0.0024 Score=48.39 Aligned_cols=24 Identities=21% Similarity=0.011 Sum_probs=21.0
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|.++|+.++|||+|+|.|.+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 345688999999999999999996
No 76
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.00054 Score=52.73 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=22.0
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+-.-|.|+|+.++|||+|+|.|.+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3455788999999999999999997
No 77
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.85 E-value=0.0025 Score=48.10 Aligned_cols=22 Identities=23% Similarity=-0.028 Sum_probs=19.9
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.=|.++|+.++|||+|+|+|.+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3488999999999999999996
No 78
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.85 E-value=0.0028 Score=48.94 Aligned_cols=24 Identities=21% Similarity=0.002 Sum_probs=21.1
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+-.-|.|+|..++|||+|+|+|.+
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHh
Confidence 345588999999999999999997
No 79
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.85 E-value=0.0042 Score=47.09 Aligned_cols=27 Identities=19% Similarity=-0.085 Sum_probs=23.6
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+.+..-|.|+|+.++|||+|+|.|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHh
Confidence 445667789999999999999999996
No 80
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.85 E-value=0.0017 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.074 Sum_probs=21.3
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+..-|.|+|+.++|||+|+|.|++
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4556789999999999999999997
No 81
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.85 E-value=0.0026 Score=52.86 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=20.8
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-.-|.++|..++|||+|+|.|.+
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 34689999999999999999997
No 82
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.84 E-value=0.0028 Score=49.01 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.9
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+-.-|.|+|+.++|||+|+|+|++
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3456689999999999999999997
No 83
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.83 E-value=0.0023 Score=49.90 Aligned_cols=23 Identities=30% Similarity=0.039 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
...|+++|+.++|||+|+|.|.+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 45689999999999999999998
No 84
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.82 E-value=0.00085 Score=58.08 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=22.1
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+.--|+|+|.+.+|||+|+|.|++.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCC
Confidence 4557999999999999999999973
No 85
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.77 E-value=0.0039 Score=48.41 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=20.2
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
++-.=|.++|..++|||+|+|++.+
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3445588999999999999998876
No 86
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.76 E-value=0.0024 Score=48.53 Aligned_cols=21 Identities=24% Similarity=-0.012 Sum_probs=19.3
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-|.|+|+.++|||+|+|.|.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999999996
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.76 E-value=0.0016 Score=48.36 Aligned_cols=20 Identities=20% Similarity=-0.087 Sum_probs=19.0
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|+.++|||+|+|.|.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999987
No 88
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.74 E-value=0.0032 Score=48.52 Aligned_cols=24 Identities=21% Similarity=0.025 Sum_probs=21.0
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+-.-|.++|..++|||+|+|.|.+
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeeEEEEECcCCCCHHHHHHHHhc
Confidence 345578999999999999999997
No 89
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.74 E-value=0.0013 Score=50.55 Aligned_cols=27 Identities=11% Similarity=0.041 Sum_probs=21.9
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
...+-.-|.|+|..++|||+|+|+|.+
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 344566789999999999999999996
No 90
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.74 E-value=0.0017 Score=50.15 Aligned_cols=24 Identities=25% Similarity=-0.064 Sum_probs=21.2
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|.|+|+.++|||+|+|.|.+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhc
Confidence 445588999999999999999997
No 91
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.73 E-value=0.0015 Score=57.40 Aligned_cols=26 Identities=19% Similarity=0.101 Sum_probs=21.9
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..+.+|+|+|+..+|||+|+|.|.+
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~ 201 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTG 201 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHC
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHC
Confidence 34677899999999999999999997
No 92
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.72 E-value=0.0016 Score=53.97 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=22.7
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+..-|.|+|.+.+|||+|+|.|++.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 34567999999999999999999973
No 93
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.71 E-value=0.0045 Score=48.43 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=20.3
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|.|+|+.++|||+|+|+|.+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344588999999999999999997
No 94
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.69 E-value=0.0039 Score=47.49 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=20.9
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-..|.++|+.++|||+|+|.|.+
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35689999999999999999996
No 95
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.69 E-value=0.0047 Score=46.34 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.5
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..+...|.|+|+.++|||+|+|.|.+
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34556688999999999999999996
No 96
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.68 E-value=0.00094 Score=64.47 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=22.3
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
++--|+|+|.+.+|||+|+|.|++.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~ 74 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGR 74 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4557899999999999999999983
No 97
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.68 E-value=0.0019 Score=50.74 Aligned_cols=24 Identities=17% Similarity=-0.123 Sum_probs=21.3
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|.|+|+.++|||+|+|.|++
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhc
Confidence 445689999999999999999996
No 98
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.67 E-value=0.0075 Score=54.13 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=22.3
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..+..-|+|+|..++|||+|+|+|++
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~ 56 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVG 56 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHc
Confidence 34566799999999999999999986
No 99
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.66 E-value=0.00088 Score=51.76 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=4.9
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.-|.|+|+.++|||+|+|.|.+
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~ 42 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTS 42 (208)
T ss_dssp EEEEEC----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5689999999999999999996
No 100
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.65 E-value=0.0013 Score=51.78 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=22.6
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+.+..-|.++|+.++|||+|+|+|.+.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 445566889999999999999999973
No 101
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.65 E-value=0.002 Score=59.59 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=22.6
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
..-.|.|+|..++|||+|+|.|++.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999973
No 102
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.65 E-value=0.0035 Score=49.08 Aligned_cols=21 Identities=24% Similarity=0.074 Sum_probs=19.6
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-|.|+|..++|||+|+|.|.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 478999999999999999997
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.65 E-value=0.0021 Score=48.59 Aligned_cols=22 Identities=18% Similarity=0.060 Sum_probs=20.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..|.++|+.++|||+|+|.|.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999996
No 104
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.64 E-value=0.0015 Score=51.12 Aligned_cols=24 Identities=25% Similarity=0.066 Sum_probs=20.9
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..=|.|+|+.++|||+|+|+|++
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 345588999999999999999996
No 105
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.64 E-value=0.0046 Score=47.56 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=21.0
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+-.-|.|+|..++|||+|+|+|.+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHc
Confidence 345588999999999999999997
No 106
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.62 E-value=0.00099 Score=50.17 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=21.0
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+-.-|.|+|+.++|||+|+|+|.+
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 345588999999999999999997
No 107
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.61 E-value=0.0036 Score=47.21 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.5
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-.=|.++|+.++|||+|+|+|.+
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34578999999999999999997
No 108
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.60 E-value=0.0059 Score=47.49 Aligned_cols=24 Identities=21% Similarity=0.093 Sum_probs=21.7
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+-..|+++|+.++|||+|+|.|.+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 446799999999999999999987
No 109
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.59 E-value=0.0054 Score=46.90 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.0
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+-.-|.|+|+.++|||+|+|+|.+
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEEECCCCCCHHHHHHHHhc
Confidence 345578999999999999999997
No 110
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.54 E-value=0.0053 Score=46.72 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=21.8
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+-.-|.|+|+.++|||+|+|+|.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3556789999999999999999996
No 111
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.54 E-value=0.0023 Score=55.90 Aligned_cols=20 Identities=25% Similarity=0.107 Sum_probs=18.9
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.|+|+.++|||+|+|.|++
T Consensus 40 I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHhC
Confidence 68999999999999999986
No 112
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.52 E-value=0.0013 Score=50.05 Aligned_cols=24 Identities=17% Similarity=-0.157 Sum_probs=11.0
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|.|+|+.++|||+|+|.|.+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEEECCCCC-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 456689999999999999999986
No 113
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.52 E-value=0.0066 Score=46.42 Aligned_cols=25 Identities=16% Similarity=0.025 Sum_probs=21.9
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+-.-|.|+|..++|||+|+|+|.+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4456689999999999999999996
No 114
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0028 Score=50.33 Aligned_cols=25 Identities=28% Similarity=0.024 Sum_probs=22.0
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+..-|.|+|+.++|||+|+|.|.+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHH
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhc
Confidence 3456689999999999999999997
No 115
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.51 E-value=0.006 Score=47.80 Aligned_cols=24 Identities=21% Similarity=-0.020 Sum_probs=20.5
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+-.-|.|+|..++|||+|+|+|..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 344578999999999999999996
No 116
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.50 E-value=0.0048 Score=54.07 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=19.5
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|.++|...+|||+|+|.|++.
T Consensus 165 i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 165 VYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCchHHHHHHHHhh
Confidence 678899999999999999985
No 117
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.49 E-value=0.0033 Score=49.93 Aligned_cols=29 Identities=21% Similarity=0.069 Sum_probs=25.7
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
..+=.+|+|+|+.++|||+|++.|.+.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45667999999999999999999999765
No 118
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.49 E-value=0.0035 Score=49.10 Aligned_cols=25 Identities=16% Similarity=-0.039 Sum_probs=21.9
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+..-|.|+|+.++|||+|+|+|.+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhh
Confidence 3456689999999999999999986
No 119
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.49 E-value=0.003 Score=46.89 Aligned_cols=22 Identities=27% Similarity=-0.025 Sum_probs=19.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.=|.++|+.++|||+|+|.|.+
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3478999999999999999986
No 120
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.47 E-value=0.0081 Score=47.56 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=20.8
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+-.=|.|+|..++|||+|+|+|.+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEECcCCCCHHHHHHHHhc
Confidence 3445688999999999999999997
No 121
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.44 E-value=0.004 Score=47.79 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=20.7
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+-.-|.|+|..++|||+|+|.|.+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345588999999999999999997
No 122
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.43 E-value=0.0062 Score=47.52 Aligned_cols=24 Identities=17% Similarity=-0.040 Sum_probs=21.1
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+-.-|.|+|..++|||+|+|.|.+
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 345588999999999999999996
No 123
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.42 E-value=0.0071 Score=46.83 Aligned_cols=22 Identities=27% Similarity=0.129 Sum_probs=20.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.-|.++|+.++|||+|+|+|.+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999997
No 124
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.40 E-value=0.006 Score=47.52 Aligned_cols=22 Identities=23% Similarity=0.060 Sum_probs=19.9
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.-|.|+|..++|||+|+|.|.+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3478999999999999999997
No 125
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.40 E-value=0.0026 Score=56.65 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=21.9
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
...-|+|+|+.++|||+|+|.|++.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999973
No 126
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.38 E-value=0.01 Score=53.02 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.-.|.|+|..++|||+|+|.|.+
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45799999999999999999997
No 127
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.38 E-value=0.002 Score=50.65 Aligned_cols=24 Identities=17% Similarity=-0.007 Sum_probs=20.7
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+-.=|.|+|..++|||+|+|.|++
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344578999999999999999986
No 128
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.36 E-value=0.0018 Score=49.91 Aligned_cols=25 Identities=16% Similarity=-0.210 Sum_probs=21.8
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+..=|.|+|+.++|||+|+|.|.+.
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcC
Confidence 4556889999999999999999973
No 129
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.34 E-value=0.0079 Score=46.41 Aligned_cols=26 Identities=15% Similarity=-0.057 Sum_probs=20.9
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..+..-|.|+|..++|||+|+|.|.+
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh
Confidence 34455688999999999999999996
No 130
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.34 E-value=0.0051 Score=48.58 Aligned_cols=24 Identities=21% Similarity=0.009 Sum_probs=20.9
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+-.-|.|+|+.++|||+|+|.|.+
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 334588999999999999999996
No 131
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.011 Score=52.50 Aligned_cols=24 Identities=25% Similarity=0.008 Sum_probs=22.0
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-++-|+++|....|||+|+|.|.+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~ 94 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTG 94 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhC
Confidence 367799999999999999999997
No 132
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.33 E-value=0.003 Score=47.59 Aligned_cols=22 Identities=23% Similarity=-0.000 Sum_probs=19.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.-|.|+|+.++|||+|+|.|.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3478999999999999999997
No 133
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.32 E-value=0.0078 Score=46.20 Aligned_cols=24 Identities=21% Similarity=-0.093 Sum_probs=21.7
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|.|+|+.++|||+|+|+|.+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999999997
No 134
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.30 E-value=0.012 Score=46.48 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.4
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+-.-|.|+|+.++|||+|+|+|.+
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Confidence 3445688999999999999999997
No 135
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.30 E-value=0.0051 Score=48.08 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=20.9
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+++ -|.++|+.++|||+|+|+|.+
T Consensus 23 ~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred CCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 3344 478999999999999999985
No 136
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.30 E-value=0.0041 Score=52.07 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=20.0
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.-|.++|..+.|||+|+|.|.+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~ 121 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKG 121 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred hheEEeCCCCCCHHHHHHHHhc
Confidence 4578899999999999999997
No 137
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.29 E-value=0.0055 Score=47.88 Aligned_cols=26 Identities=23% Similarity=-0.052 Sum_probs=21.7
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..+..-|.|+|+.++|||+|+|+|.+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHh
Confidence 34567899999999999999999975
No 138
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.26 E-value=0.0041 Score=55.21 Aligned_cols=20 Identities=15% Similarity=-0.062 Sum_probs=19.1
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|+|+|...+|||+|+|.|.+
T Consensus 3 I~ivG~pnvGKSTL~n~L~~ 22 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATL 22 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHC
Confidence 78999999999999999997
No 139
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.24 E-value=0.01 Score=45.33 Aligned_cols=29 Identities=17% Similarity=-0.035 Sum_probs=23.2
Q ss_pred cCCC-CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 10 RRPS-DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 10 ~~~~-~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+.-. ++-.-|.|+|+.++|||+|+|+|.+
T Consensus 15 ~~f~~~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 15 GLLPADRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp HTSCTTSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred hhccCCCceEEEEECCCCCCHHHHHHHHHc
Confidence 3444 4455689999999999999999975
No 140
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.23 E-value=0.0043 Score=53.94 Aligned_cols=30 Identities=10% Similarity=0.127 Sum_probs=26.2
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+.+..+|+++|+.++|||+|+|.|.+.+.
T Consensus 70 ~~~~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 70 GKPLAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cccCceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 345688999999999999999999998654
No 141
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.20 E-value=0.0069 Score=53.51 Aligned_cols=21 Identities=29% Similarity=0.200 Sum_probs=19.6
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-|+++|...+|||+|+|.|.+
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 378999999999999999997
No 142
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.19 E-value=0.0095 Score=45.36 Aligned_cols=24 Identities=17% Similarity=0.021 Sum_probs=20.7
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+-.-|.|+|..++|||+|+|+|.+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Confidence 345588999999999999999996
No 143
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.15 E-value=0.012 Score=52.32 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.3
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
...-|+++|....|||+|+|.|++
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~ 197 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLG 197 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhC
Confidence 345688999999999999999997
No 144
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.14 E-value=0.011 Score=52.47 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=20.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..|+|+|....|||+|+|+|.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~ 25 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAG 25 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEE
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999997
No 145
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.10 E-value=0.011 Score=46.04 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=21.4
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..-|.++|..+.|||+|+|+|.+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 455689999999999999999996
No 146
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.10 E-value=0.0087 Score=54.54 Aligned_cols=23 Identities=30% Similarity=0.150 Sum_probs=20.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.-|.++|....|||+|+|.|.+.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~ 266 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNE 266 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCC
Confidence 45789999999999999999984
No 147
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.07 E-value=0.036 Score=49.44 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=21.9
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+..-|.++|....|||+|+|.|++
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~ 217 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLG 217 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHT
T ss_pred cccceeEEecCCCCCHHHHHHHHhC
Confidence 3456788999999999999999996
No 148
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.04 E-value=0.0057 Score=48.35 Aligned_cols=34 Identities=15% Similarity=0.041 Sum_probs=27.0
Q ss_pred HhcCCCCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 8 THRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 8 ~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+.+....+-.+|+|+|+.++|||+|++.|.+.+.
T Consensus 14 ~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 14 ILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3433345567899999999999999999998653
No 149
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.03 E-value=0.004 Score=48.51 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|+++||.++|||+|++.|.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 378999999999999999999853
No 150
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.02 E-value=0.0028 Score=49.49 Aligned_cols=24 Identities=25% Similarity=0.094 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+++++||.++|||+|++.|.+.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 578999999999999999998653
No 151
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.99 E-value=0.0062 Score=47.26 Aligned_cols=27 Identities=15% Similarity=-0.063 Sum_probs=22.7
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+.+-.-|.|+|+.++|||+|+|+|.+
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHh
Confidence 344556699999999999999999985
No 152
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.99 E-value=0.011 Score=50.15 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=18.9
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
|.++|..++|||+|+|.|++
T Consensus 6 I~lvG~~~vGKSSLi~~l~~ 25 (307)
T 3r7w_A 6 LLLMGRSGSGKSSMRSIIFS 25 (307)
T ss_dssp EEEECCTTSSHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999986
No 153
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.99 E-value=0.0026 Score=48.16 Aligned_cols=24 Identities=17% Similarity=-0.031 Sum_probs=21.0
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+-.-|.|+|+.++|||+|+|.|.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445688999999999999999985
No 154
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.96 E-value=0.0092 Score=52.28 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=19.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-|.++|...+|||+|+|.|++.
T Consensus 162 ~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 162 DVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp CEEEEEBTTSSHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHhh
Confidence 3678899999999999999985
No 155
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.94 E-value=0.0047 Score=48.01 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.++.|+||.++|||+|+|.|.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 378999999999999999999854
No 156
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.94 E-value=0.016 Score=44.35 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=22.0
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+-.-|.++|+.++|||+|+|+|.+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4556789999999999999999986
No 157
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.93 E-value=0.0046 Score=49.06 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=21.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+||.++|||+|+|.|.+.+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 378999999999999999999864
No 158
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.93 E-value=0.028 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=20.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..|+|+|....|||+|+|+|.+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~ 23 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVK 23 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999997
No 159
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.91 E-value=0.016 Score=46.50 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=21.7
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+..-|.|+|..+.|||+|+|++.+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3456689999999999999999985
No 160
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.91 E-value=0.0084 Score=47.27 Aligned_cols=25 Identities=16% Similarity=-0.029 Sum_probs=20.8
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+-.-|.|+|..++|||+|+|.++.
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~ 37 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLT 37 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHc
Confidence 3445688999999999999999664
No 161
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=95.86 E-value=0.0042 Score=56.51 Aligned_cols=24 Identities=33% Similarity=0.214 Sum_probs=19.8
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+. |.|+|...+|||+|+|.|++.
T Consensus 233 ~~k-V~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 233 GVS-TVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp CEE-EEEECCTTSSHHHHHHHCC--
T ss_pred CCE-EEEECCCCCCHHHHHHHHhCC
Confidence 443 889999999999999999973
No 162
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=95.86 E-value=0.036 Score=52.50 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=24.1
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
..++..|+|+|...+|||+|+|.|+.+
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~ 33 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYY 33 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHh
Confidence 356889999999999999999999964
No 163
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.85 E-value=0.0052 Score=48.31 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=23.7
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+-.+|+|+|+.++|||+|++.|.+.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999998644
No 164
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=95.85 E-value=0.015 Score=48.28 Aligned_cols=24 Identities=21% Similarity=-0.068 Sum_probs=20.8
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
...-|.++|..++|||+|+|.+.+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~ 177 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTT 177 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCChHHHHHHHHh
Confidence 345588999999999999999996
No 165
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.83 E-value=0.0085 Score=50.92 Aligned_cols=30 Identities=13% Similarity=-0.104 Sum_probs=25.7
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
...+-.+|+|+|+.++|||+|++.|.+.+.
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345667899999999999999999998765
No 166
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.76 E-value=0.0048 Score=50.67 Aligned_cols=24 Identities=21% Similarity=0.041 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+||.++|||+||+.|.+.+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 378999999999999999999854
No 167
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.76 E-value=0.013 Score=49.17 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=20.4
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..|+++|...+|||+|+|.|.+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4689999999999999999997
No 168
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.74 E-value=0.0059 Score=50.50 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=22.9
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+++|+||.++|||+||+.|.+.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7899999999999999999999653
No 169
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.69 E-value=0.0054 Score=48.63 Aligned_cols=24 Identities=25% Similarity=0.117 Sum_probs=21.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|+|+||.++|||+|++.|.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368899999999999999999854
No 170
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.68 E-value=0.015 Score=47.08 Aligned_cols=59 Identities=22% Similarity=0.146 Sum_probs=34.9
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhhhcccccCCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccceecCCCCCccEEE
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYIATLPTGEKAAVI 97 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~~~~~~~~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~~~~~~g~~~~vl 97 (193)
=|.|+|..+.|||.|++++... .|.- .-..|.|+-...+.+. .++..+.+-
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~-----------------------~f~~---~~~~Tig~d~~~k~~~---~~~~~v~l~ 65 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD-----------------------SFDN---TYQATIGIDFLSKTMY---LEDRTIRLQ 65 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS-----------------------CCC-------------CEEEEEE---CSSCEEEEE
T ss_pred EEEEECcCCcCHHHHHHHHHhC-----------------------CCCC---CcCCccceEEEEEEEE---ecceEEEEE
Confidence 3678899999999999999861 2321 1223555544333322 255667888
Q ss_pred EEeccccc
Q psy5032 98 LLDTQGTF 105 (193)
Q Consensus 98 llDTEG~~ 105 (193)
+.||.|..
T Consensus 66 iwDtaGqe 73 (216)
T 4dkx_A 66 LWDTAGLE 73 (216)
T ss_dssp EECCSCTT
T ss_pred EEECCCch
Confidence 99999864
No 171
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.67 E-value=0.0052 Score=49.67 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=23.3
Q ss_pred CcHHHHHHhcCCC----CCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 1 MAEYVKVTHRRPS----DNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 1 ~~e~~~~~~~~~~----~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|||.+-..+...+ .+=.+|+|.|+.++|||+|++.|.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 1 MAEAASCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp -----------CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CcccccchhhCCccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 6777666554432 24468999999999999999999874
No 172
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.65 E-value=0.0051 Score=51.69 Aligned_cols=24 Identities=21% Similarity=0.092 Sum_probs=21.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.|+|+|+.++|||+|+|.|++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999999653
No 173
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.63 E-value=0.0025 Score=57.75 Aligned_cols=21 Identities=24% Similarity=0.050 Sum_probs=19.8
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|.|+|+..+|||+|+|.|++.
T Consensus 227 V~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 227 VAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHhCC
Confidence 889999999999999999984
No 174
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.59 E-value=0.0066 Score=49.13 Aligned_cols=23 Identities=13% Similarity=-0.057 Sum_probs=21.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+||+.|.+.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999996
No 175
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=95.59 E-value=0.011 Score=53.80 Aligned_cols=24 Identities=25% Similarity=0.148 Sum_probs=21.3
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+-.-|.++|..++|||+|+|.|.+
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~ 63 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIG 63 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 445688999999999999999997
No 176
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.59 E-value=0.0055 Score=49.92 Aligned_cols=23 Identities=35% Similarity=0.023 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+||.++|||+||+.|.+.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999853
No 177
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.55 E-value=0.0062 Score=49.04 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=21.0
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+||.++|||+|++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68899999999999999999854
No 178
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.51 E-value=0.0068 Score=50.39 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=22.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-+++|+||.++|||+||+.|.+.+.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3799999999999999999998643
No 179
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=95.50 E-value=0.092 Score=49.84 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=23.2
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.++..|+|+|...+|||+|++.|+.+
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~ 33 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFY 33 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHh
Confidence 46778999999999999999999864
No 180
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.49 E-value=0.0072 Score=49.37 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 181
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.48 E-value=0.0095 Score=46.85 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=21.0
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.++++|+.++|||+||+.|.+.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999965
No 182
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.48 E-value=0.0086 Score=51.43 Aligned_cols=28 Identities=14% Similarity=-0.027 Sum_probs=24.7
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+-.+|+|+|+.++|||+|++.|.+.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4557899999999999999999999764
No 183
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.47 E-value=0.0085 Score=48.78 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=22.3
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-.+|+|.|+.++|||+|++.|.+.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998854
No 184
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.47 E-value=0.0087 Score=48.75 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=22.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.++.|+||.++|||+|++.|++...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4789999999999999999998643
No 185
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.46 E-value=0.0088 Score=49.96 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=23.8
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+=.+|.|+||.++|||+||+.|++...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 445899999999999999999999764
No 186
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=95.46 E-value=0.016 Score=50.45 Aligned_cols=23 Identities=22% Similarity=0.026 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
++-|+++|...+|||+|+|.|.+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~ 180 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSS 180 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEE
T ss_pred cCeeeeeCCCCCCHHHHHHHHHc
Confidence 56799999999999999999986
No 187
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=95.46 E-value=0.1 Score=45.70 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=24.0
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
..++-.-|+++|...+|||+|+|.|.+.
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 3456667999999999999999999973
No 188
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.43 E-value=0.0075 Score=49.57 Aligned_cols=24 Identities=33% Similarity=0.228 Sum_probs=21.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+++|+|+.++|||+||+.|.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 799999999999999999998643
No 189
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=95.43 E-value=0.053 Score=51.31 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=24.3
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
...++..|+|+|...+|||+|+|+|+.+
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~ 35 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYY 35 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHh
Confidence 3456888999999999999999999964
No 190
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=95.43 E-value=0.038 Score=51.68 Aligned_cols=25 Identities=28% Similarity=0.216 Sum_probs=18.5
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
++.-|+|+|....|||+|+|+|+.+
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~ 27 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQI 27 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4667999999999999999999974
No 191
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.41 E-value=0.0078 Score=50.27 Aligned_cols=24 Identities=21% Similarity=0.009 Sum_probs=21.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+||.++|||+||+.|.+.+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999853
No 192
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.41 E-value=0.0079 Score=49.49 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-+++|+|+.++|||+||+.|.+.+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999999643
No 193
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.39 E-value=0.0081 Score=46.41 Aligned_cols=21 Identities=19% Similarity=-0.034 Sum_probs=18.3
Q ss_pred eEEEeeCCCCCChHHHHHHHH
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLL 37 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll 37 (193)
-+++++|+.++|||+|++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 479999999999999999533
No 194
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.38 E-value=0.008 Score=49.43 Aligned_cols=23 Identities=17% Similarity=0.043 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999854
No 195
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.38 E-value=0.0077 Score=50.54 Aligned_cols=23 Identities=30% Similarity=0.301 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999999864
No 196
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.37 E-value=0.0091 Score=49.39 Aligned_cols=22 Identities=23% Similarity=0.040 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++|+|+.++|||+||+.|.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999995
No 197
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.36 E-value=0.0082 Score=50.77 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+||.++|||+||+.|.+.+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999999999864
No 198
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.36 E-value=0.0087 Score=46.08 Aligned_cols=23 Identities=17% Similarity=0.014 Sum_probs=21.0
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+|.++|+.++|||+|++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999999984
No 199
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.35 E-value=0.0069 Score=49.35 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999853
No 200
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=95.35 E-value=0.039 Score=50.69 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=22.5
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+..-|+|+|...+|||+|+|+|+.+
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCChHHHHHHHHHhh
Confidence 4677999999999999999999974
No 201
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.34 E-value=0.015 Score=44.31 Aligned_cols=37 Identities=16% Similarity=-0.034 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 3 EYVKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 3 e~~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+++...++.. +=.++.+.|+.++|||+|++.+.+.+.
T Consensus 25 ~~~~~~l~~~--~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 25 AELVYVLRHK--HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp HHHHHHCCCC--CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456666666 445678899999999999999999653
No 202
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.32 E-value=0.0088 Score=49.96 Aligned_cols=24 Identities=13% Similarity=0.033 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+||.++|||+||+.|.+.+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999854
No 203
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.31 E-value=0.0087 Score=49.56 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
No 204
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.30 E-value=0.011 Score=45.91 Aligned_cols=24 Identities=8% Similarity=-0.144 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.++|+.++|||+|++.|.+.+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 378999999999999999999864
No 205
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.30 E-value=0.01 Score=49.73 Aligned_cols=23 Identities=22% Similarity=0.040 Sum_probs=21.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+++|+|+.++|||+||+.|.+.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999985
No 206
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.24 E-value=0.068 Score=47.49 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=23.3
Q ss_pred hcCCCCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 9 HRRPSDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 9 ~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+.+.... ..|+++|+.++|||+|+|.|.+
T Consensus 14 lg~v~~g-~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 14 WGRPGNN-LKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CSSSSSC-CEEEEEECSSSSHHHHHHHHHH
T ss_pred hccccCC-CEEEEECCCCCCHHHHHHHHHC
Confidence 3344333 4689999999999999999998
No 207
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.23 E-value=0.0096 Score=49.96 Aligned_cols=24 Identities=21% Similarity=-0.000 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+.+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 378999999999999999999854
No 208
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=95.21 E-value=0.1 Score=45.63 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=23.2
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++..-|+++|....|||+|+|.|.+.
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhh
Confidence 346677999999999999999999985
No 209
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.20 E-value=0.01 Score=49.40 Aligned_cols=23 Identities=22% Similarity=0.010 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999864
No 210
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.18 E-value=0.01 Score=49.41 Aligned_cols=24 Identities=33% Similarity=0.211 Sum_probs=21.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+++|+|+.++|||+||+.|.+.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998643
No 211
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.18 E-value=0.01 Score=49.91 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999854
No 212
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.17 E-value=0.014 Score=45.28 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=22.5
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
=.+|+++|+.++|||+|++.|.+.+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3589999999999999999999964
No 213
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.16 E-value=0.011 Score=44.70 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|.++|+.++|||+|++.|.+.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999853
No 214
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.16 E-value=0.014 Score=49.46 Aligned_cols=21 Identities=24% Similarity=0.072 Sum_probs=18.8
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|+|+|+.++|||+|+|.|++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 499999999999999999873
No 215
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.15 E-value=0.01 Score=49.57 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999854
No 216
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.14 E-value=0.0064 Score=54.52 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=22.6
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.-.+|+++|+.++|||+|+|.|.+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4458999999999999999999984
No 217
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.13 E-value=0.011 Score=49.39 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 78999999999999999999854
No 218
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.12 E-value=0.025 Score=49.03 Aligned_cols=29 Identities=14% Similarity=-0.009 Sum_probs=25.0
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.++-.||+|+|+.++|||+|++.|.+.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45667899999999999999999988653
No 219
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.09 E-value=0.012 Score=46.30 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=21.4
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+++|+|+.++|||+|++.|.+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999984
No 220
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.07 E-value=0.011 Score=49.88 Aligned_cols=24 Identities=29% Similarity=0.185 Sum_probs=21.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+++|+|+.++|||+||+.|.+.+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 689999999999999999998643
No 221
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.06 E-value=0.0039 Score=48.54 Aligned_cols=24 Identities=21% Similarity=-0.020 Sum_probs=20.7
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+-.-|.|+|..++|||+|+|+|.+
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 344588999999999999999986
No 222
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=95.05 E-value=0.068 Score=46.89 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=24.3
Q ss_pred CCCCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 11 RPSDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 11 ~~~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
..+++...|+++|....|||+|+|.|.+
T Consensus 5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g 32 (410)
T 1kk1_A 5 KSRQAEVNIGMVGHVDHGKTTLTKALTG 32 (410)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred ccCCCccEEEEECCCCCCHHHHHHHHhC
Confidence 3456788899999999999999999986
No 223
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=95.03 E-value=0.061 Score=50.39 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=20.5
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
++.-|+|+|....|||+|+|+|+..
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~ 29 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEY 29 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 5677999999999999999999974
No 224
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.00 E-value=0.014 Score=46.39 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=20.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+++|+||.++|||+|++.|+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999999999994
No 225
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.98 E-value=0.0026 Score=49.49 Aligned_cols=25 Identities=28% Similarity=-0.040 Sum_probs=21.5
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+..-|.|+|+.++|||+|+|.|.+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3456689999999999999999985
No 226
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.91 E-value=0.018 Score=45.27 Aligned_cols=27 Identities=19% Similarity=-0.026 Sum_probs=23.6
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+=.+|.|+|+.++|||+|++.|.+.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446899999999999999999998653
No 227
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.89 E-value=0.017 Score=45.33 Aligned_cols=25 Identities=8% Similarity=-0.083 Sum_probs=21.9
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
=.+|.++|+.++|||+|++.|.+.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3578999999999999999998753
No 228
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.88 E-value=0.016 Score=50.71 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=23.8
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
=.+|.|+||.++|||+||+.|++.+..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 348999999999999999999997653
No 229
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=94.86 E-value=0.043 Score=50.48 Aligned_cols=25 Identities=24% Similarity=0.130 Sum_probs=22.3
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
++..|+|+|...+|||+|+|.|+.+
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~ 36 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLF 36 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhh
Confidence 5678999999999999999999853
No 230
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.85 E-value=0.016 Score=49.96 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=22.0
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|+|+||.++|||+|++.|++.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 468999999999999999999965
No 231
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.85 E-value=0.018 Score=45.79 Aligned_cols=25 Identities=8% Similarity=-0.079 Sum_probs=21.9
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
=.+|.++||.++|||+|++.|.+.+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3478899999999999999999854
No 232
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.84 E-value=0.018 Score=44.45 Aligned_cols=22 Identities=18% Similarity=-0.109 Sum_probs=20.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
++.++|+.++|||+|++.|.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 6899999999999999999874
No 233
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.81 E-value=0.014 Score=52.62 Aligned_cols=21 Identities=29% Similarity=0.145 Sum_probs=20.0
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|+|+|+.++|||+|||.|++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 899999999999999999984
No 234
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.80 E-value=0.015 Score=49.32 Aligned_cols=28 Identities=18% Similarity=0.007 Sum_probs=24.3
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+-.+|+|+|+.++|||+|++.|.+.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457899999999999999999998653
No 235
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.78 E-value=0.029 Score=48.48 Aligned_cols=30 Identities=20% Similarity=0.055 Sum_probs=25.8
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
...+..+|.|+|+.++|||+|+|.|...+.
T Consensus 75 ~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 75 DSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp GCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999999998753
No 236
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.77 E-value=0.016 Score=49.40 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=23.8
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++-|+.|.|+.++|||+|||.|++.
T Consensus 2 ~~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 2 NPIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CCEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred CcccEEEEEecCCCCHHHHHHHHHhh
Confidence 36889999999999999999999985
No 237
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.76 E-value=0.011 Score=47.42 Aligned_cols=24 Identities=21% Similarity=0.034 Sum_probs=15.8
Q ss_pred eEEEeeCCCCCChHHHHHHHH-hhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLL-RYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll-~~l 40 (193)
.+|+++||.++|||+|++.|. +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 379999999999999999999 753
No 238
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=94.76 E-value=0.071 Score=48.00 Aligned_cols=26 Identities=23% Similarity=0.019 Sum_probs=22.4
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
++..-|+++|....|||+|+|+|+..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45556779999999999999999875
No 239
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.74 E-value=0.022 Score=44.90 Aligned_cols=27 Identities=19% Similarity=-0.011 Sum_probs=24.0
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+.++.|+|+.++|||+|+|.|++.+.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 467899999999999999999998754
No 240
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.72 E-value=0.02 Score=45.23 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=21.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|+|+|+.++|||++++.|.+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998754
No 241
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.71 E-value=0.02 Score=46.28 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=21.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.++||.++|||+|+|.|++..
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 467899999999999999999854
No 242
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.66 E-value=0.017 Score=48.43 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=21.5
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999865
No 243
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.58 E-value=0.021 Score=51.18 Aligned_cols=28 Identities=21% Similarity=0.012 Sum_probs=24.6
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+=.+|.|+||.++|||+||+.|++.+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4566899999999999999999999753
No 244
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.57 E-value=0.017 Score=48.92 Aligned_cols=22 Identities=23% Similarity=0.057 Sum_probs=20.5
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++++|+.++|||+|||.|.+.
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTT
T ss_pred eEEEECCCCCcHHHHHHHhccc
Confidence 6899999999999999999984
No 245
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=94.57 E-value=0.1 Score=50.55 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=27.6
Q ss_pred HHHHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 3 EYVKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 3 e~~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|+...+... ..++.-|+|+|...+|||+|+|+|+.+
T Consensus 7 ~~~~~~m~~-~~~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 7 DQMRSLMDK-VTNVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp HHHHHHHHC-GGGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred HHHHHHhhC-cccccEEEEECCCCCCHHHHHHHHHHh
Confidence 344444433 346778999999999999999999975
No 246
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=94.57 E-value=0.051 Score=48.61 Aligned_cols=23 Identities=17% Similarity=-0.023 Sum_probs=20.5
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-.-|.|+|....|||+|+|+|.+
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~ 344 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKL 344 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEcCCCCCHHHHHHHHhc
Confidence 34577999999999999999997
No 247
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.56 E-value=0.02 Score=45.62 Aligned_cols=24 Identities=13% Similarity=-0.002 Sum_probs=21.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+|+++|+.++|||+|++.|.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 588999999999999999999764
No 248
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.56 E-value=0.025 Score=42.34 Aligned_cols=24 Identities=13% Similarity=-0.218 Sum_probs=21.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.|.|+.++|||++.+.|...+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998753
No 249
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.53 E-value=0.029 Score=46.06 Aligned_cols=25 Identities=16% Similarity=0.016 Sum_probs=22.0
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+-.+|+|.|+.++|||++++.|..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999994
No 250
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.52 E-value=0.025 Score=44.63 Aligned_cols=28 Identities=11% Similarity=-0.092 Sum_probs=24.4
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
++.+|.|+|+.++|||+|++.|+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 4678999999999999999999998753
No 251
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.52 E-value=0.012 Score=50.61 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+|+|+|+.++|||+|++.|++..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 378999999999999999999854
No 252
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=94.50 E-value=0.091 Score=46.56 Aligned_cols=27 Identities=22% Similarity=0.131 Sum_probs=23.4
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.++..-|.++|....|||+|+|+|++.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~ 47 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHD 47 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhh
Confidence 345677899999999999999999974
No 253
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.46 E-value=0.023 Score=44.35 Aligned_cols=25 Identities=12% Similarity=-0.059 Sum_probs=22.0
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
..+|.++|+.++|||++++.|.+.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998754
No 254
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.45 E-value=0.026 Score=44.29 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=23.1
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+-.+|.|+|+.++|||+|++.|.+.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999999854
No 255
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.41 E-value=0.018 Score=49.04 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=21.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+++|+|+.++|||+||+.|.+.+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 789999999999999999998643
No 256
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.41 E-value=0.025 Score=41.99 Aligned_cols=21 Identities=19% Similarity=0.021 Sum_probs=19.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+|.++|+.++|||++.+.| ..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHH-HH
Confidence 6889999999999999999 53
No 257
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.39 E-value=0.022 Score=50.19 Aligned_cols=22 Identities=32% Similarity=0.176 Sum_probs=20.5
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++++|+.++|||+|+|.|++.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 6899999999999999999984
No 258
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.36 E-value=0.011 Score=46.38 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=22.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+|+|+|+.++|||+|++.|.+.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5799999999999999999999764
No 259
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.35 E-value=0.026 Score=45.76 Aligned_cols=23 Identities=9% Similarity=-0.061 Sum_probs=21.0
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-.+|.|+|+.++|||+|++.|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999994
No 260
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.32 E-value=0.028 Score=43.10 Aligned_cols=25 Identities=16% Similarity=0.002 Sum_probs=22.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
..+.+.||.++|||+|++.+.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999998764
No 261
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.31 E-value=0.042 Score=41.72 Aligned_cols=25 Identities=12% Similarity=-0.039 Sum_probs=22.1
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+-.+|.++|+.++|||++++.|.+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999874
No 262
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.31 E-value=0.028 Score=44.06 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=24.0
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.++.+|.++|..++|||+|+|.|+..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999999864
No 263
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.28 E-value=0.025 Score=49.99 Aligned_cols=24 Identities=21% Similarity=0.027 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 378999999999999999999854
No 264
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.27 E-value=0.027 Score=49.37 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=23.9
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+=.+|.|+|+.++|||+||+.|++...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 445899999999999999999999764
No 265
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.27 E-value=0.025 Score=49.69 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=22.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-+++++||.++|||+||+.|.+...
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3789999999999999999999653
No 266
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.27 E-value=0.032 Score=47.66 Aligned_cols=28 Identities=18% Similarity=0.030 Sum_probs=24.6
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
+-.+|+++|+.++|||+|++.|.+++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4569999999999999999999997653
No 267
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.22 E-value=0.029 Score=47.83 Aligned_cols=26 Identities=15% Similarity=-0.049 Sum_probs=23.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
.|++++|+.++|||+|++.|.+++..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 59999999999999999999997653
No 268
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=94.21 E-value=0.046 Score=46.75 Aligned_cols=22 Identities=18% Similarity=-0.059 Sum_probs=19.9
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.-|.|+|..++|||+|+|.|.+
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCS
T ss_pred ceEEEECCCCccHHHHHHHHhC
Confidence 3589999999999999999986
No 269
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.19 E-value=0.041 Score=47.34 Aligned_cols=31 Identities=16% Similarity=0.046 Sum_probs=26.1
Q ss_pred CCCCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 11 RPSDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 11 ~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
....+..+|+++|+.++|||+|+|.|.+.+.
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3345678899999999999999999998654
No 270
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.17 E-value=0.035 Score=45.28 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=22.8
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+..+|+|.|+.++|||++.+.|...+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 271
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.16 E-value=0.028 Score=43.81 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=20.0
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+|+|+|+.++|||++++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 272
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.15 E-value=0.035 Score=43.67 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=23.9
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.++.+|.|+|..++|||+|+|+|+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999999864
No 273
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.13 E-value=0.035 Score=42.81 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=22.6
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+-.+|.|.|+.++|||++.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 44568999999999999999999873
No 274
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.12 E-value=0.06 Score=46.56 Aligned_cols=29 Identities=10% Similarity=-0.018 Sum_probs=25.3
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
.+=.||+++|+.++|||+|++.|.+++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34579999999999999999999997653
No 275
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.12 E-value=0.028 Score=49.59 Aligned_cols=24 Identities=13% Similarity=-0.074 Sum_probs=21.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+++++||.++|||+||+.|.+...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 689999999999999999998643
No 276
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.12 E-value=0.028 Score=49.42 Aligned_cols=25 Identities=16% Similarity=-0.049 Sum_probs=22.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-+++++||.++|||+||+.|.+...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC
Confidence 3689999999999999999999653
No 277
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.09 E-value=0.031 Score=43.66 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=20.4
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+|+++|+.++|||++.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999987
No 278
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.09 E-value=0.029 Score=49.37 Aligned_cols=25 Identities=20% Similarity=0.018 Sum_probs=22.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-+++++||.++|||+||+.|.+...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3789999999999999999999643
No 279
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.07 E-value=0.03 Score=47.52 Aligned_cols=22 Identities=23% Similarity=-0.053 Sum_probs=20.0
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++++|+.++|||+|+|.|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 67899999999999999999 53
No 280
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.06 E-value=0.02 Score=49.85 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|.|+|+.++|||+|||.|++..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68899999999999999999864
No 281
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=94.06 E-value=0.25 Score=43.99 Aligned_cols=27 Identities=11% Similarity=0.015 Sum_probs=23.1
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+++..-|+++|....|||+|+|+|+..
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 445667899999999999999999864
No 282
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.06 E-value=0.029 Score=49.78 Aligned_cols=25 Identities=20% Similarity=0.008 Sum_probs=22.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-+++++||.++|||+||+.|.+...
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3789999999999999999999653
No 283
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.04 E-value=0.03 Score=49.45 Aligned_cols=25 Identities=12% Similarity=-0.068 Sum_probs=22.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-+++++||.++|||+||+.|.+...
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 3789999999999999999999653
No 284
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.03 E-value=0.026 Score=49.72 Aligned_cols=25 Identities=24% Similarity=0.073 Sum_probs=22.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-+++++||.++|||+||+.|.+...
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3789999999999999999999654
No 285
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.96 E-value=0.02 Score=49.42 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=21.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+|.|+|+.++|||+|||.|.+...
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 688999999999999999999753
No 286
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.90 E-value=0.062 Score=47.17 Aligned_cols=27 Identities=15% Similarity=-0.055 Sum_probs=24.0
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
=.||+++|+.++|||+|++.|.+++..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 358999999999999999999997653
No 287
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=93.86 E-value=0.16 Score=44.46 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=22.9
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+++..-|+++|....|||+|+|+|.+
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g 30 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTG 30 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHS
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhC
Confidence 34667799999999999999999986
No 288
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.80 E-value=0.044 Score=42.11 Aligned_cols=23 Identities=17% Similarity=0.083 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|.|.|+.++|||++.+.|...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999865
No 289
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=93.78 E-value=0.11 Score=48.41 Aligned_cols=26 Identities=23% Similarity=0.019 Sum_probs=21.9
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
++..-|+|+|....|||+|+|+|++.
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHh
Confidence 34556789999999999999999963
No 290
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.73 E-value=0.042 Score=42.86 Aligned_cols=25 Identities=8% Similarity=-0.145 Sum_probs=21.9
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.++.|+|+.++|||+|++.|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999997543
No 291
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.67 E-value=0.035 Score=43.61 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=21.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.++|+.++|||+|.+.|...+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 467889999999999999999865
No 292
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.66 E-value=0.017 Score=53.00 Aligned_cols=23 Identities=13% Similarity=0.223 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|.|+|+.++|||+|||.|++.+
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 38999999999999999999864
No 293
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.65 E-value=0.029 Score=52.34 Aligned_cols=25 Identities=20% Similarity=0.032 Sum_probs=22.0
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+-.|+|+|+.++|||+|||.|.+..
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CCeEEEECCCCChHHHHHHHHhCCC
Confidence 3349999999999999999999964
No 294
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.62 E-value=0.063 Score=49.41 Aligned_cols=27 Identities=15% Similarity=-0.071 Sum_probs=23.9
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
=.||+++|+.++|||+|++.|.+++..
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 458999999999999999999997653
No 295
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.61 E-value=0.026 Score=49.35 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=22.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-+++++||.++|||+||+.|.+...
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 3789999999999999999999653
No 296
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=93.59 E-value=0.17 Score=44.26 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-.-|+++|....|||+|+|.|.+.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 346899999999999999999985
No 297
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.52 E-value=0.054 Score=41.19 Aligned_cols=24 Identities=4% Similarity=-0.067 Sum_probs=21.6
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+|.|.|+.++|||++.+.|...+.
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988654
No 298
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.49 E-value=0.047 Score=41.49 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=22.4
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+|.|.|+.++|||++.+.|...+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999998764
No 299
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.37 E-value=0.056 Score=40.66 Aligned_cols=22 Identities=14% Similarity=-0.073 Sum_probs=20.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+|.++|+.++|||++.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3688999999999999999997
No 300
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.36 E-value=0.04 Score=50.80 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=22.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-|++++|+.++|||+||+.|.+.+
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999999964
No 301
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=93.35 E-value=0.33 Score=45.58 Aligned_cols=26 Identities=19% Similarity=0.011 Sum_probs=23.5
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+...|+|+|..++|||+|+|.|++.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHh
Confidence 46788999999999999999999975
No 302
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.32 E-value=0.021 Score=44.61 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=21.9
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+|+|.|+.++|||++++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 303
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.32 E-value=0.041 Score=48.88 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=22.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-+++++||.++|||+||+.|.+...
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC
Confidence 3789999999999999999998643
No 304
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.31 E-value=0.061 Score=41.08 Aligned_cols=24 Identities=17% Similarity=0.040 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.+.|+.++|||++++.|.+.+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999865
No 305
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.29 E-value=0.062 Score=42.00 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=22.7
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+-.+|.++|+.++|||++...|.+.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44589999999999999999999754
No 306
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.28 E-value=0.024 Score=49.57 Aligned_cols=25 Identities=8% Similarity=0.028 Sum_probs=22.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-+++++||.++|||+||+.|.+...
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3789999999999999999999643
No 307
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.23 E-value=0.042 Score=47.42 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=22.9
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-..++|+|+.++|||+|++.|.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999999654
No 308
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.20 E-value=0.049 Score=50.08 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=21.9
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++++|+.++|||+||+.|.+.+
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999954
No 309
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.17 E-value=0.059 Score=42.49 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=20.4
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.+|.|.|+.++|||++++.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 310
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=93.15 E-value=0.13 Score=46.52 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=20.9
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
-..|+++|....|||+|+|.|.+
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~ 41 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTE 41 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHC
Confidence 45689999999999999999987
No 311
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.15 E-value=0.042 Score=49.16 Aligned_cols=21 Identities=24% Similarity=0.072 Sum_probs=19.6
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|+|+|+.++|||+|+|.|++.
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 599999999999999999984
No 312
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.09 E-value=0.014 Score=50.24 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=20.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++++|+.++|||+|+|.|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 78999999999999999999843
No 313
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=93.06 E-value=0.074 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=21.0
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+|+|+|...+|||+|+|+|++.
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~ 28 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGS 28 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999974
No 314
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=93.06 E-value=0.13 Score=46.19 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=22.3
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
++..-|+++|....|||+|+|+|++.
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34566889999999999999999974
No 315
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.06 E-value=0.068 Score=41.32 Aligned_cols=23 Identities=13% Similarity=-0.008 Sum_probs=21.0
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|+|.|+.++|||++.+.|...+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998753
No 316
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=92.98 E-value=0.035 Score=51.32 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=20.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+|.|+|....|||+|+|.|.+.
T Consensus 6 kV~IvG~~~vGKTSLl~~L~~~ 27 (537)
T 3izy_P 6 VVTIMGHVDHGKTTLLDKLRKT 27 (537)
T ss_dssp BCEEEESTTTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999974
No 317
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.95 E-value=0.055 Score=50.68 Aligned_cols=25 Identities=20% Similarity=-0.000 Sum_probs=22.4
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-+++++||.++|||+||+.|.+.+.
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 3799999999999999999999653
No 318
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.91 E-value=0.042 Score=49.69 Aligned_cols=24 Identities=21% Similarity=0.128 Sum_probs=21.9
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+|+|+|+.++|||+||+.|+++..
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTH
T ss_pred EEEEECCCCCCHHHHHHHHhCccc
Confidence 588999999999999999999764
No 319
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.87 E-value=0.072 Score=43.80 Aligned_cols=24 Identities=8% Similarity=-0.159 Sum_probs=21.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.|+|+.+||||+|.+.|...+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999998754
No 320
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.77 E-value=0.082 Score=40.16 Aligned_cols=24 Identities=8% Similarity=-0.177 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.+.|+.++|||++.+.|...+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 321
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.75 E-value=0.07 Score=40.75 Aligned_cols=24 Identities=17% Similarity=-0.013 Sum_probs=21.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.++|+.++|||++.+.|...+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478899999999999999998754
No 322
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.75 E-value=0.081 Score=40.02 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|-++|+.++|||++.+.|...+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 67899999999999999999854
No 323
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.73 E-value=0.081 Score=40.50 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+|.+.|+.++|||++.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998763
No 324
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.71 E-value=0.067 Score=48.90 Aligned_cols=25 Identities=12% Similarity=-0.009 Sum_probs=23.0
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-+++|+|+.++|||+||+.|.+.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 7899999999999999999999654
No 325
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.70 E-value=0.083 Score=40.78 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=22.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+|.+.|+.++|||++.+.|...+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999998653
No 326
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.69 E-value=0.083 Score=40.20 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=21.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|.+.|+.++|||++.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999865
No 327
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.67 E-value=0.077 Score=41.28 Aligned_cols=22 Identities=14% Similarity=-0.053 Sum_probs=20.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.++.|+|+.++|||+|+..|..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999997
No 328
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=92.67 E-value=0.06 Score=49.39 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
-+|+|+|....|||+|+|+|.+.
T Consensus 5 ~~V~IvGhvd~GKTTLl~~L~~~ 27 (501)
T 1zo1_I 5 PVVTIMGHVDHGKTSLLEYIRST 27 (501)
T ss_dssp CCEEEEESTTSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 329
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.66 E-value=0.075 Score=40.54 Aligned_cols=24 Identities=25% Similarity=0.115 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+..|+|+.++|||+|+..|...+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 788999999999999999987654
No 330
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.64 E-value=0.13 Score=39.52 Aligned_cols=27 Identities=11% Similarity=-0.032 Sum_probs=23.6
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+=.+|.++|+.++|||++++.|...+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 446789999999999999999998764
No 331
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.63 E-value=0.087 Score=40.13 Aligned_cols=23 Identities=13% Similarity=-0.113 Sum_probs=20.5
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|.+.|+.++|||++.+.|...+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998643
No 332
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.60 E-value=0.076 Score=40.74 Aligned_cols=24 Identities=13% Similarity=-0.108 Sum_probs=21.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.+.|+.++|||++.+.|...+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998864
No 333
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.54 E-value=0.083 Score=41.76 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=21.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.++.|+|+.++|||+|+..|...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 47899999999999999999984
No 334
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.53 E-value=0.061 Score=50.30 Aligned_cols=24 Identities=13% Similarity=0.023 Sum_probs=22.0
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++++|+.++|||+||+.|.+.+
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 479999999999999999999964
No 335
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.52 E-value=0.063 Score=49.46 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+|++.|.+..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999954
No 336
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.51 E-value=0.11 Score=40.28 Aligned_cols=27 Identities=19% Similarity=-0.011 Sum_probs=23.2
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+..+|.+.|+.++|||++.+.|...+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998753
No 337
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.42 E-value=0.075 Score=44.06 Aligned_cols=25 Identities=16% Similarity=-0.085 Sum_probs=22.4
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.++.|+|+.++|||+|++.|.+.+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998764
No 338
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.39 E-value=0.074 Score=48.88 Aligned_cols=23 Identities=13% Similarity=-0.002 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999954
No 339
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.32 E-value=0.068 Score=49.24 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=21.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+++|+|+.++|||+||+.|.+.+.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999643
No 340
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.30 E-value=0.06 Score=49.61 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+++|+|+.++|||+|++.|.+...
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhhccC
Confidence 789999999999999999999643
No 341
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.29 E-value=0.085 Score=40.96 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=22.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+|.+.|+.++|||++.+.|...+.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998653
No 342
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.28 E-value=0.076 Score=49.64 Aligned_cols=23 Identities=13% Similarity=-0.002 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+.+
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999954
No 343
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.27 E-value=0.059 Score=49.78 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+++|+|+.++|||+|++.|.+...
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 689999999999999999999643
No 344
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.26 E-value=0.097 Score=40.02 Aligned_cols=24 Identities=8% Similarity=-0.082 Sum_probs=21.4
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.+.|+.++|||++.+.|...+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998754
No 345
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.13 E-value=0.066 Score=49.61 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=22.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-+++|+|+.++|||+|++.|++...
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcC
Confidence 4799999999999999999999643
No 346
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.12 E-value=0.1 Score=40.28 Aligned_cols=24 Identities=8% Similarity=-0.046 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.+.|+.++|||++.+.|...+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999865
No 347
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=92.08 E-value=0.32 Score=42.47 Aligned_cols=20 Identities=15% Similarity=0.032 Sum_probs=19.3
Q ss_pred EEEeeCCCCCChHHHHHHHH
Q psy5032 18 KNSEKSAFRKGKSFLLDFLL 37 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll 37 (193)
.|+++|....|||+|+|+|+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999998
No 348
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.07 E-value=0.092 Score=39.41 Aligned_cols=23 Identities=17% Similarity=-0.117 Sum_probs=20.6
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|.+.|+.++|||++.+.|...+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998754
No 349
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.01 E-value=0.098 Score=39.65 Aligned_cols=24 Identities=13% Similarity=-0.053 Sum_probs=21.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.+.|+.++|||++.+.|...+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998754
No 350
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.00 E-value=0.092 Score=39.91 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=20.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|.|+|+.++|||++...|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998754
No 351
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=91.95 E-value=0.045 Score=49.00 Aligned_cols=25 Identities=24% Similarity=0.021 Sum_probs=22.2
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+...|+++|+..+|||+|||.|.+.
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Confidence 3567999999999999999999874
No 352
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.95 E-value=0.11 Score=42.89 Aligned_cols=24 Identities=21% Similarity=0.040 Sum_probs=21.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.|.|+.++|||++.+.|...+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998653
No 353
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.89 E-value=0.091 Score=49.19 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+|+|+|+.++|||+||+.|.+.+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 368999999999999999999954
No 354
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.88 E-value=0.21 Score=37.04 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=20.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.|-+.|+.++|||+|++.+...+.
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHH
Confidence 356889999999999999998764
No 355
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.86 E-value=0.1 Score=40.50 Aligned_cols=25 Identities=20% Similarity=0.021 Sum_probs=22.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+|.+.|+.++|||++.+.|...+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999998653
No 356
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.86 E-value=0.13 Score=38.52 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=20.6
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.|.+.|+.++|||++.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998754
No 357
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.79 E-value=0.094 Score=43.23 Aligned_cols=25 Identities=24% Similarity=0.072 Sum_probs=22.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.++.|+|+.++|||+|+..|+..+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999998543
No 358
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.67 E-value=0.13 Score=39.15 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=20.9
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.++|+.++|||++.+.|...+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 367799999999999999998754
No 359
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.66 E-value=0.13 Score=41.84 Aligned_cols=25 Identities=20% Similarity=-0.060 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-.+|.+.|+.++|||++...|...+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478899999999999999998643
No 360
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.64 E-value=0.094 Score=47.06 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-+++|+|+.++|||+||+.|.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 368999999999999999999964
No 361
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.60 E-value=0.079 Score=44.70 Aligned_cols=26 Identities=12% Similarity=-0.012 Sum_probs=19.4
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
..+|+|.|+.++|||++.+.|...+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34799999999999999999987543
No 362
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.55 E-value=0.1 Score=45.42 Aligned_cols=23 Identities=22% Similarity=0.101 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+++|+|+.++|||+||+.|.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999963
No 363
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=91.50 E-value=0.1 Score=45.79 Aligned_cols=21 Identities=29% Similarity=0.140 Sum_probs=19.6
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|+++|+..+|||+|+|.|.+.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999984
No 364
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.49 E-value=0.12 Score=41.78 Aligned_cols=22 Identities=14% Similarity=-0.103 Sum_probs=20.1
Q ss_pred EEeeCCCCCChHHHHHHHHhhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l 40 (193)
|.+.||.++|||+|++.+.+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999853
No 365
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.41 E-value=0.23 Score=40.79 Aligned_cols=32 Identities=16% Similarity=-0.003 Sum_probs=27.5
Q ss_pred cCCCCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 10 RRPSDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 10 ~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
...++|...|-+.|+.++|||+|+..+.+.+.
T Consensus 41 ~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 41 KDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 44566788899999999999999999999764
No 366
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.39 E-value=0.12 Score=39.45 Aligned_cols=24 Identities=17% Similarity=-0.101 Sum_probs=20.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.+.|+.++|||++++.|...+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 356799999999999999998754
No 367
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.39 E-value=0.19 Score=38.92 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.4
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
..|-+.|+.++|||+|+..+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999998654
No 368
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.34 E-value=0.13 Score=40.76 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=22.6
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.-.+|+++|..+||||++.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999875
No 369
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.31 E-value=0.12 Score=41.11 Aligned_cols=21 Identities=29% Similarity=0.134 Sum_probs=18.7
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|-|+||.++||++|++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999974
No 370
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.26 E-value=0.16 Score=38.19 Aligned_cols=26 Identities=19% Similarity=-0.050 Sum_probs=21.8
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
..-+|.+.|..++|||++...|...+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998754
No 371
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.24 E-value=0.15 Score=40.16 Aligned_cols=25 Identities=20% Similarity=-0.109 Sum_probs=22.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+|.+.|+.++|||++++.|.+.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4788999999999999999998764
No 372
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.24 E-value=0.061 Score=49.59 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+++|+||.++|||+|++.|++...
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 3789999999999999999998643
No 373
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.23 E-value=0.071 Score=49.31 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+++|+|+.++|||+|++.|++...
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3789999999999999999999643
No 374
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.17 E-value=0.16 Score=41.94 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=21.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.|.|+.|+|||+|++.+...+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 588999999999999999998753
No 375
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.15 E-value=0.15 Score=39.82 Aligned_cols=23 Identities=9% Similarity=-0.058 Sum_probs=19.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.|.|.|+.++|||++.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37789999999999999997643
No 376
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.09 E-value=0.12 Score=39.48 Aligned_cols=23 Identities=22% Similarity=0.042 Sum_probs=20.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|.++|+.++|||++...|...+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998754
No 377
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.09 E-value=0.27 Score=37.32 Aligned_cols=23 Identities=17% Similarity=-0.114 Sum_probs=20.6
Q ss_pred EEeeCCCCCChHHHHHHHHhhhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
|-+.|+.++|||+|+..+...+.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 78999999999999999998653
No 378
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.08 E-value=0.14 Score=43.64 Aligned_cols=27 Identities=11% Similarity=-0.013 Sum_probs=23.4
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
++...+.+.||.++|||+|++.+.+.+
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345668899999999999999999975
No 379
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.08 E-value=0.16 Score=39.38 Aligned_cols=23 Identities=13% Similarity=-0.114 Sum_probs=20.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|.+.|+.++|||++.+.|...+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998754
No 380
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.81 E-value=0.12 Score=39.04 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=17.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.+.|+.++|||++.+.|...+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998754
No 381
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.79 E-value=0.2 Score=42.82 Aligned_cols=27 Identities=11% Similarity=-0.125 Sum_probs=24.2
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+-.||.++|+.++|||+++..|.+++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 457999999999999999999998764
No 382
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.76 E-value=0.17 Score=46.33 Aligned_cols=28 Identities=14% Similarity=-0.001 Sum_probs=23.6
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+..+|.++|+.++|||+++|.|..++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999998764
No 383
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.67 E-value=0.2 Score=42.62 Aligned_cols=29 Identities=21% Similarity=0.238 Sum_probs=23.8
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
..+..+|+|.|+.|+|||+|++.+...+.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 34567777799999999999999998654
No 384
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.64 E-value=0.18 Score=38.92 Aligned_cols=23 Identities=9% Similarity=0.010 Sum_probs=21.0
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+|.++|+.++|||++.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999886
No 385
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.61 E-value=0.15 Score=43.21 Aligned_cols=27 Identities=15% Similarity=-0.074 Sum_probs=23.8
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+-.||.++|+.++|||+++..|.+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998765
No 386
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.54 E-value=0.16 Score=41.74 Aligned_cols=22 Identities=14% Similarity=-0.103 Sum_probs=20.1
Q ss_pred EEeeCCCCCChHHHHHHHHhhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l 40 (193)
|.+.||.++|||+|++.+.+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 7899999999999999999853
No 387
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.48 E-value=0.19 Score=40.72 Aligned_cols=27 Identities=7% Similarity=0.017 Sum_probs=23.5
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+=.+|.+.|+.++|||++++.|...+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 345789999999999999999999764
No 388
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.48 E-value=0.032 Score=45.93 Aligned_cols=25 Identities=12% Similarity=0.007 Sum_probs=22.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
+++|+||.++|||+||+.|.+.+..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccccc
Confidence 5789999999999999999997653
No 389
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.48 E-value=0.16 Score=44.01 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.5
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
=.++.|+|+.++|||+|+++|....
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999864
No 390
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.46 E-value=0.19 Score=41.92 Aligned_cols=24 Identities=17% Similarity=-0.093 Sum_probs=21.5
Q ss_pred CceEEEeeCCCCCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+..+|.|+|+.++|||++.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999984
No 391
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.45 E-value=0.16 Score=42.31 Aligned_cols=22 Identities=14% Similarity=-0.047 Sum_probs=20.3
Q ss_pred EEeeCCCCCChHHHHHHHHhhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l 40 (193)
|.+.||.++|||+|++.+.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 8899999999999999999853
No 392
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.45 E-value=0.16 Score=40.29 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=21.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.+.|+.++|||++.+.|...+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998654
No 393
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.42 E-value=0.24 Score=39.77 Aligned_cols=29 Identities=17% Similarity=0.059 Sum_probs=25.0
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-.+..++.+.|.-++|||+|+|.|..++.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 34678899999999999999999997654
No 394
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=90.33 E-value=0.14 Score=45.62 Aligned_cols=31 Identities=16% Similarity=-0.008 Sum_probs=24.0
Q ss_pred HHhcCCCCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 7 VTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 7 ~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
.++.++..+.. |+++|+..+|||+|+|.|.+
T Consensus 14 ~l~g~i~~~~k-vgIVG~pnvGKSTL~n~Ltg 44 (396)
T 2ohf_A 14 PIIGRFGTSLK-IGIVGLPNVGKSTFFNVLTN 44 (396)
T ss_dssp --CCCSSSCCC-EEEECCSSSSHHHHHHHHHC
T ss_pred HHHhhccCCCE-EEEECCCCCCHHHHHHHHHC
Confidence 34555555554 78999999999999999997
No 395
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=90.33 E-value=0.47 Score=48.14 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=24.3
Q ss_pred CCCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 12 PSDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 12 ~~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+++..-|+|+|....|||+|+|.|.+.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 3456778999999999999999999974
No 396
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.19 E-value=0.2 Score=37.85 Aligned_cols=25 Identities=32% Similarity=0.178 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+..|+||.++|||.||..|.-.+.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHc
Confidence 4778999999999999999987554
No 397
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=90.13 E-value=0.2 Score=43.53 Aligned_cols=26 Identities=15% Similarity=-0.014 Sum_probs=22.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
.+..|+|+.++|||+|++.+...+++
T Consensus 24 g~~~i~G~NGaGKTTll~ai~~al~g 49 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAISFALFG 49 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35669999999999999999977664
No 398
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.12 E-value=0.21 Score=39.12 Aligned_cols=22 Identities=9% Similarity=-0.148 Sum_probs=19.5
Q ss_pred EEeeCCCCCChHHHHHHHHhhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l 40 (193)
|.+.|+.++|||++.+.|...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7789999999999999997643
No 399
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.05 E-value=0.17 Score=42.38 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=22.9
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+-..|.|.|+.|+|||+|++.+.+.+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999998653
No 400
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.03 E-value=0.23 Score=39.86 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=22.4
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+-.+|.|+|+.++|||++.+.|.+.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44579999999999999999998743
No 401
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.02 E-value=0.24 Score=39.08 Aligned_cols=24 Identities=13% Similarity=-0.104 Sum_probs=21.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
..|.+.|+.++|||++.+.|...+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998764
No 402
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.01 E-value=0.19 Score=44.34 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.+.||.++|||+|++.|.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 478899999999999999999864
No 403
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.99 E-value=0.25 Score=40.41 Aligned_cols=26 Identities=15% Similarity=-0.078 Sum_probs=22.7
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
..+|.++|+.++|||++.+.|...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999998653
No 404
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.97 E-value=0.19 Score=43.50 Aligned_cols=23 Identities=26% Similarity=0.115 Sum_probs=20.3
Q ss_pred EEeeCCCCCChHHHHHHHHhhhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+.|+|+.++|||+|++.|+..+.
T Consensus 38 ~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 38 WTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998654
No 405
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.91 E-value=0.3 Score=36.30 Aligned_cols=24 Identities=13% Similarity=-0.046 Sum_probs=20.7
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.|-+.|+.++|||+|+..+...+.
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999998754
No 406
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=89.87 E-value=0.11 Score=48.73 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=18.2
Q ss_pred EEEeeCCCCCChHHHHHHHH
Q psy5032 18 KNSEKSAFRKGKSFLLDFLL 37 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll 37 (193)
+++|+||.++|||+|+|.++
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 68999999999999998765
No 407
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.81 E-value=0.18 Score=41.83 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=20.6
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|.++|+.++|||++++.|.+.+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58899999999999999998743
No 408
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.81 E-value=0.17 Score=40.00 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-..|.+.|+.++|||++.+.|...+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999998754
No 409
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=89.74 E-value=0.16 Score=41.49 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=20.6
Q ss_pred CceEEEeeCCC---------CCChHHHHHHHHh
Q psy5032 15 NDSKNSEKSAF---------RKGKSFLLDFLLR 38 (193)
Q Consensus 15 ~V~VVSV~G~~---------rtGKSfLLN~Ll~ 38 (193)
+..=|.|+|.. +.|||+|+|+|.+
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 34457899999 9999999999996
No 410
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.70 E-value=0.19 Score=39.58 Aligned_cols=24 Identities=13% Similarity=-0.020 Sum_probs=20.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.++.|+|+.++|||+|+.+++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999987776543
No 411
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.37 E-value=0.19 Score=45.08 Aligned_cols=27 Identities=19% Similarity=0.115 Sum_probs=24.0
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+..+|.++|+.++|||++++.|..++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446899999999999999999999765
No 412
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.27 E-value=0.15 Score=41.53 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=23.6
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
++-.+|.|.|..++|||++++.|..++
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 355789999999999999999999875
No 413
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.27 E-value=0.29 Score=40.88 Aligned_cols=34 Identities=12% Similarity=-0.069 Sum_probs=24.9
Q ss_pred HhcCCCCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 8 THRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 8 ~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
..+....+...|-+.|+.++|||+|+..+.+.+.
T Consensus 29 ~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 29 ALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp HHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 3334332344567899999999999999998754
No 414
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.15 E-value=0.21 Score=40.67 Aligned_cols=25 Identities=8% Similarity=-0.092 Sum_probs=22.2
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-.+|.++|+.++|||++.+.|...+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3678999999999999999998864
No 415
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.98 E-value=0.2 Score=39.52 Aligned_cols=24 Identities=17% Similarity=0.019 Sum_probs=21.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.+.|+.++|||++.+.|...+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998765
No 416
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.95 E-value=0.3 Score=38.93 Aligned_cols=23 Identities=9% Similarity=-0.143 Sum_probs=20.5
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.|.+.|+.++|||++.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
No 417
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.92 E-value=0.27 Score=42.92 Aligned_cols=25 Identities=16% Similarity=-0.089 Sum_probs=22.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+|.|+|+.++|||+|...|...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999998654
No 418
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.84 E-value=0.14 Score=50.78 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.9
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+|+|+|+.++|||+||+.|.+.+.
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 799999999999999999999643
No 419
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.72 E-value=0.22 Score=45.18 Aligned_cols=20 Identities=10% Similarity=0.046 Sum_probs=18.5
Q ss_pred eEEEeeCCCCCChHHHHHHH
Q psy5032 17 SKNSEKSAFRKGKSFLLDFL 36 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~L 36 (193)
.++.|+|+.++|||+|++.+
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 47899999999999999995
No 420
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.70 E-value=0.32 Score=37.19 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+|-|.|+.++|||+|+..+.+.+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 677999999999999999998654
No 421
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.66 E-value=0.33 Score=40.70 Aligned_cols=23 Identities=17% Similarity=-0.123 Sum_probs=20.9
Q ss_pred EEeeCCCCCChHHHHHHHHhhhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+-+.||.++|||+|++.|.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 88999999999999999999654
No 422
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.59 E-value=0.25 Score=48.91 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=19.8
Q ss_pred EEEeeCCCCCChHHHHHHHHh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+++|+|+.++|||+||+.|.+
T Consensus 463 ~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999995
No 423
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.44 E-value=0.28 Score=39.36 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+|.|.|..++|||++++.|..++.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998763
No 424
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=88.39 E-value=0.4 Score=44.49 Aligned_cols=29 Identities=14% Similarity=0.031 Sum_probs=24.9
Q ss_pred CCCCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 11 RPSDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 11 ~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
..+++..-|+|+|....|||+|+|+|+..
T Consensus 172 ~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp SCCCCEEEEEEECCSSSTHHHHHHHHHHH
T ss_pred ccCCCccEEEEEcCCCCCHHHHHHHHHHH
Confidence 34567778999999999999999999864
No 425
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.25 E-value=0.28 Score=38.55 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=20.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.|.+.|+.++|||++.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998754
No 426
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=88.23 E-value=0.32 Score=40.09 Aligned_cols=23 Identities=30% Similarity=0.138 Sum_probs=20.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+|.|.|+.|+|||+|++.+...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 57889999999999999999874
No 427
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.20 E-value=0.39 Score=41.12 Aligned_cols=29 Identities=14% Similarity=-0.026 Sum_probs=25.0
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
.+-.||.|+|+.++|||+++..|.+++..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35568999999999999999999987653
No 428
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=88.18 E-value=0.4 Score=43.08 Aligned_cols=28 Identities=11% Similarity=-0.158 Sum_probs=24.7
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
+-.||.++|++++|||++++.|..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999987753
No 429
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=88.04 E-value=0.26 Score=43.69 Aligned_cols=23 Identities=35% Similarity=0.261 Sum_probs=20.2
Q ss_pred ceEEEeeCCCCCChHHHHHHHHh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
=.++.|+|+.++|||+|+.+|.-
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHH
Confidence 35899999999999999998863
No 430
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.97 E-value=0.38 Score=37.35 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=21.9
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-..|-+.|+.++|||+|+..+...+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567899999999999999998654
No 431
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.93 E-value=0.31 Score=38.10 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=20.5
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|.|.|+.++|||++...|...+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58899999999999999998753
No 432
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.85 E-value=0.28 Score=44.43 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=22.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.++.|.|+.++|||+|++.|++...
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998643
No 433
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=87.84 E-value=0.35 Score=40.45 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=23.2
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+-..|-|.|+.++|||+|++.+.+.+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445677999999999999999998763
No 434
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=87.80 E-value=0.41 Score=37.88 Aligned_cols=26 Identities=31% Similarity=0.217 Sum_probs=22.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
.+..|+|+.++|||++|..|.-.+.+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 57889999999999999999876653
No 435
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.79 E-value=0.17 Score=51.23 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=21.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.|+|+|+.++|||+|++.|++..
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCc
Confidence 58999999999999999999954
No 436
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=87.64 E-value=0.38 Score=40.43 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=21.4
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.|-|.|+.++|||+|++.+.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 677999999999999999998654
No 437
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.60 E-value=0.41 Score=38.21 Aligned_cols=24 Identities=13% Similarity=-0.026 Sum_probs=21.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
..|.+.|+.++|||++.+.|...+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998764
No 438
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.57 E-value=0.2 Score=46.31 Aligned_cols=25 Identities=20% Similarity=-0.071 Sum_probs=22.7
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+|.++|+.++|||+|++.|.+.+.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 5799999999999999999998764
No 439
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.52 E-value=0.24 Score=50.18 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
..|+|+|+.++|||+|++.|++...
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cEEEEEecCCCcHHHHHHHhccccc
Confidence 3689999999999999999999643
No 440
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=87.52 E-value=0.35 Score=42.52 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=21.8
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+++|+|+.++|||+||+.+...+.
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4788999999999999999997543
No 441
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=87.37 E-value=0.24 Score=50.05 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=22.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-+|+|+|+.++|||+|++.|++...
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999999999999999998643
No 442
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.34 E-value=0.39 Score=39.48 Aligned_cols=23 Identities=13% Similarity=-0.100 Sum_probs=20.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+|-++|+.++|||++.+.|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999999873
No 443
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=87.25 E-value=0.41 Score=40.08 Aligned_cols=25 Identities=12% Similarity=-0.035 Sum_probs=21.6
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-.+|-++|+.++|||++.+.|...+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999998753
No 444
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.15 E-value=0.38 Score=38.71 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=19.9
Q ss_pred EEeeCCCCCChHHHHHHHHhhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l 40 (193)
|-+.|+.++|||+|+..+.+.+
T Consensus 48 vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHc
Confidence 6699999999999999999864
No 445
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=86.65 E-value=0.84 Score=38.58 Aligned_cols=26 Identities=12% Similarity=-0.073 Sum_probs=23.2
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-.+|.++|+.++|||++++.|..++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46888999999999999999998764
No 446
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=86.47 E-value=0.63 Score=42.02 Aligned_cols=28 Identities=18% Similarity=0.087 Sum_probs=24.8
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
+-.||.++|+.++|||++++.|..++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999988753
No 447
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=86.39 E-value=0.48 Score=40.38 Aligned_cols=25 Identities=32% Similarity=0.178 Sum_probs=21.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+..|+||.++|||.||..+.-.+.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 5778999999999999999866554
No 448
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.19 E-value=0.39 Score=40.60 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=20.1
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+..|+|+.++|||.||..|..-
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHT
T ss_pred cEEEECCCCCcHHHHHHHHHHH
Confidence 7899999999999999999853
No 449
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=86.18 E-value=0.64 Score=39.25 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=21.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
..|-+.|+.++|||+|+..+...+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566899999999999999998765
No 450
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=86.04 E-value=0.35 Score=48.80 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|+|+|+.++|||+|++.|++..
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999999954
No 451
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=85.93 E-value=0.45 Score=45.92 Aligned_cols=23 Identities=13% Similarity=-0.140 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.++.|.||.++|||+||+.+.+.
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 47899999999999999999885
No 452
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=85.93 E-value=0.51 Score=42.29 Aligned_cols=25 Identities=24% Similarity=0.004 Sum_probs=22.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+|.|+||.++|||+|...|...+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4788999999999999999998654
No 453
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.88 E-value=0.5 Score=41.06 Aligned_cols=23 Identities=13% Similarity=-0.021 Sum_probs=20.9
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+|.|+||.++|||+|...|...+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhC
Confidence 68899999999999999999854
No 454
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=85.78 E-value=0.46 Score=45.65 Aligned_cols=24 Identities=17% Similarity=-0.087 Sum_probs=21.4
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.++.|.||.++|||+||+.+.+..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhhh
Confidence 378999999999999999999853
No 455
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=85.75 E-value=0.14 Score=44.27 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=20.5
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
++.++|+.++|||+||+.|..-+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999987643
No 456
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=85.72 E-value=0.57 Score=37.97 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=24.5
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
..|-.||.|.|..|+||++..+.+...+
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 4577899999999999999999998743
No 457
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=85.36 E-value=0.59 Score=39.35 Aligned_cols=27 Identities=15% Similarity=-0.028 Sum_probs=23.5
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+-.+|+++|+.++|||+++..|.+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999998765
No 458
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.14 E-value=0.58 Score=40.57 Aligned_cols=24 Identities=17% Similarity=-0.017 Sum_probs=21.5
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.|+||.++|||+|...|...+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 468899999999999999999864
No 459
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=85.10 E-value=0.53 Score=41.16 Aligned_cols=25 Identities=12% Similarity=-0.104 Sum_probs=22.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.++.|.|+.++|||+|+.++.....
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998643
No 460
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=84.93 E-value=0.6 Score=41.28 Aligned_cols=26 Identities=23% Similarity=0.078 Sum_probs=22.8
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
++..-|.++|....|||+|+|+|+..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 45667899999999999999999864
No 461
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=84.73 E-value=0.54 Score=41.60 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=23.5
Q ss_pred hcCCCCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 9 HRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 9 ~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
++....+...|+|-|.-++|||++++.|..++.
T Consensus 42 ~~~~~~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 42 PEQKMPTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp ----CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred cccCCCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 333344677899999999999999999998653
No 462
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=84.67 E-value=0.63 Score=40.25 Aligned_cols=24 Identities=17% Similarity=-0.065 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+|.|+|+.++|||+|...|...+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378899999999999999999865
No 463
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=84.57 E-value=0.77 Score=36.87 Aligned_cols=26 Identities=19% Similarity=0.037 Sum_probs=23.1
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
.+|.+.|+-++|||++++.|..++..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999999988753
No 464
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=84.38 E-value=1.1 Score=40.44 Aligned_cols=30 Identities=17% Similarity=0.029 Sum_probs=24.6
Q ss_pred hcCCCCCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 9 HRRPSDNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 9 ~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
+........+|+|.|+.+.|||+|+..+..
T Consensus 140 L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 140 LSKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp HTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred HhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 333345678999999999999999999875
No 465
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=84.28 E-value=0.5 Score=42.34 Aligned_cols=25 Identities=20% Similarity=0.013 Sum_probs=22.5
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~ 38 (193)
++..-|.++|....|||+|+|+|+.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHH
Confidence 5667799999999999999999985
No 466
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=84.25 E-value=0.56 Score=43.09 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=19.3
Q ss_pred EEeeCCCCCChHHHHHHHHhhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+-|+|+.++|||++||.|+..+
T Consensus 170 lLIaG~TGSGKSt~L~~li~sL 191 (512)
T 2ius_A 170 LLVAGTTGSGASVGVNAMILSM 191 (512)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998643
No 467
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=84.23 E-value=0.67 Score=36.68 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=21.3
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
||+|.|++++|||++...|...|
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998854
No 468
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=83.94 E-value=0.65 Score=40.55 Aligned_cols=25 Identities=24% Similarity=-0.096 Sum_probs=22.4
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
.+|.|+||.++|||.|...|...+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3788999999999999999998764
No 469
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=83.83 E-value=0.86 Score=40.13 Aligned_cols=25 Identities=20% Similarity=-0.005 Sum_probs=21.7
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
+-.+|-++|+.++|||++.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3467889999999999999999874
No 470
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=83.78 E-value=0.96 Score=40.41 Aligned_cols=29 Identities=10% Similarity=-0.004 Sum_probs=25.2
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
++..||.++|+.++|||++...|..++..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999987753
No 471
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=83.74 E-value=0.5 Score=44.09 Aligned_cols=17 Identities=24% Similarity=-0.005 Sum_probs=15.6
Q ss_pred eEEEeeCCCCCChHHHH
Q psy5032 17 SKNSEKSAFRKGKSFLL 33 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLL 33 (193)
-+++|+||.++|||+||
T Consensus 45 e~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 45 KLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHh
Confidence 37999999999999997
No 472
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=83.70 E-value=0.72 Score=40.26 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=21.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.++.++|+.++|||+||+.+....
T Consensus 27 g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHhc
Confidence 389999999999999999998643
No 473
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.11 E-value=0.69 Score=37.83 Aligned_cols=26 Identities=12% Similarity=-0.079 Sum_probs=22.1
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+-.-|-+.||.++|||+|+..+.+.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 44567799999999999999999864
No 474
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.92 E-value=1.4 Score=37.03 Aligned_cols=24 Identities=17% Similarity=-0.130 Sum_probs=21.6
Q ss_pred EEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
+-+.||.++|||+++..+.+.+.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 778999999999999999998753
No 475
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=82.52 E-value=0.81 Score=35.68 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=17.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
++-+.|+.++|||++|-+++..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999998666653
No 476
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=82.33 E-value=0.74 Score=40.18 Aligned_cols=23 Identities=30% Similarity=0.031 Sum_probs=20.0
Q ss_pred EEeeCCCCCChHHHHHHHHhhhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+.|+|+.|+|||++++.++..+.
T Consensus 56 ~~i~G~tGsGKs~~~~~li~~~~ 78 (437)
T 1e9r_A 56 LLVNGATGTGKSVLLRELAYTGL 78 (437)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999998887654
No 477
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=82.26 E-value=0.84 Score=37.44 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=23.2
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
.+|.+.|+.++|||++++.|..++..
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998754
No 478
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=82.20 E-value=1.1 Score=36.55 Aligned_cols=28 Identities=14% Similarity=0.062 Sum_probs=24.3
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
+=.+|.+.|.-++|||++++.|...+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3467999999999999999999998754
No 479
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=82.08 E-value=0.81 Score=37.35 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=20.3
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
.+|.+.|+-++|||++++.|..++..
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999998754
No 480
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=82.06 E-value=0.95 Score=37.69 Aligned_cols=27 Identities=15% Similarity=0.005 Sum_probs=22.4
Q ss_pred CCceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 14 DNDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 14 ~~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
.+...|-+.|+.++|||+|+..+...+
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 445557899999999999999998753
No 481
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.03 E-value=1.7 Score=35.96 Aligned_cols=23 Identities=13% Similarity=-0.091 Sum_probs=20.9
Q ss_pred EEeeCCCCCChHHHHHHHHhhhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+-+.||.++|||+|+..+.+.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 77899999999999999998764
No 482
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=81.98 E-value=1.1 Score=37.55 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=22.4
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
-..|-|.|+.++|||+|++.+.+.+.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 34788999999999999999998653
No 483
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=81.83 E-value=1.2 Score=39.58 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=22.4
Q ss_pred ceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 16 DSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 16 V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
...+-+.|+.++|||+|++.+.+++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44577999999999999999998764
No 484
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=81.83 E-value=1.1 Score=36.55 Aligned_cols=30 Identities=10% Similarity=-0.073 Sum_probs=24.2
Q ss_pred CCCceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 13 SDNDSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 13 ~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
..+..-|-+.|+.++|||+|+..+...+..
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345556789999999999999988887643
No 485
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=81.77 E-value=0.94 Score=36.45 Aligned_cols=25 Identities=8% Similarity=-0.028 Sum_probs=22.8
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
+|.+.|+-++|||++++.|..++..
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999998764
No 486
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=81.69 E-value=1.4 Score=38.65 Aligned_cols=40 Identities=18% Similarity=0.033 Sum_probs=28.2
Q ss_pred cHHHHHHhcC--CCCCceEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 2 AEYVKVTHRR--PSDNDSKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 2 ~e~~~~~~~~--~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
+|.++..++. .++.+..|.++|+.++|||++...|.+.+.
T Consensus 8 ~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 8 ADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3445554431 234456688999999999999998888653
No 487
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=81.67 E-value=1.7 Score=36.57 Aligned_cols=35 Identities=6% Similarity=-0.114 Sum_probs=26.2
Q ss_pred HHHHhcCCCCCceEEEeeCCCCCChHHHHHHHHhh
Q psy5032 5 VKVTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 5 ~~~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
....++....|-.-|-+.||.+||||+|.+.|...
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34445554234455889999999999999999985
No 488
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=81.60 E-value=1.1 Score=40.03 Aligned_cols=28 Identities=14% Similarity=-0.089 Sum_probs=24.3
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
+-.||.++|+.++|||+++..|..++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4468999999999999999999998753
No 489
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=81.52 E-value=1.9 Score=39.52 Aligned_cols=112 Identities=20% Similarity=0.206 Sum_probs=56.3
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhhhhccc-----cc----CCCCCCCCCCCCCCCCceecCCCCcccceEEEeeccce
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYMNFTYI-----EE----APSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHVYI 85 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l~~~~~-----~~----~~~~~~l~~~~~~~~gF~~~~~~~~~T~GIwmw~~p~~ 85 (193)
++-=|+|+|--..|||+|...|+.+--.-.. .+ ....||+. .|...|-++ -+.+.-
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~--~EreRGITI-------------~s~~~~ 94 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMA--MERERGISV-------------TTSVMQ 94 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC----------------------C-------------TTTEEE
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChH--HHHHCCCcE-------------eeceEE
Confidence 3455899999999999999999965211000 00 01234442 233344433 333222
Q ss_pred ecCCCCCccEEEEEecccccCccccccchhHHHHHHHhhhceEEEeCcccCChhHHHHHHHHHH
Q psy5032 86 ATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTE 149 (193)
Q Consensus 86 ~~~~~g~~~~vlllDTEG~~~~~~~~~~d~~if~L~~LLSS~~IyN~~~~i~~~~l~~L~l~~~ 149 (193)
+.. ++..+=||||+|-.|-.. ...-+|.++=+-+++..-..-+..+....++...+
T Consensus 95 ~~~---~~~~iNlIDTPGHvDF~~-----Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~ 150 (548)
T 3vqt_A 95 FPY---RDRVVNLLDTPGHQDFSE-----DTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM 150 (548)
T ss_dssp EEE---TTEEEEEECCCCGGGCSH-----HHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH
T ss_pred EEE---CCEEEEEEeCCCcHHHHH-----HHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH
Confidence 221 235688999999775432 12344555456667777766666655544444333
No 490
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=81.47 E-value=1.2 Score=35.38 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=22.4
Q ss_pred eEEEeeCCCCCChHHHHHHHHhhhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRYMN 41 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~l~ 41 (193)
..|++-|.-++|||++++.|..++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3688999999999999999999874
No 491
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=81.27 E-value=1.5 Score=35.91 Aligned_cols=35 Identities=9% Similarity=0.021 Sum_probs=25.4
Q ss_pred HHhcCCCCCceEEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 7 VTHRRPSDNDSKNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 7 ~~~~~~~~~V~VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
..++.+.++ .-+-+.||.+||||++...|.+.+.+
T Consensus 50 ~~~~~iPkk-n~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 50 SFLKGTPKK-NCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHTCTTC-SEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHhcCCcc-cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334444333 23789999999999999999987643
No 492
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=81.19 E-value=0.98 Score=37.28 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=20.9
Q ss_pred eEEEeeCCCCCChHHHHHHHHhh
Q psy5032 17 SKNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 17 ~VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.+|++.|..+||||+..+.|...
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~ 24 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999873
No 493
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=81.16 E-value=1 Score=36.47 Aligned_cols=23 Identities=13% Similarity=-0.048 Sum_probs=20.2
Q ss_pred EEEeeCCCCCChHHHHHHHHhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
-|-+.|+.++|||+|+..+...+
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 36788999999999999999864
No 494
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=81.11 E-value=0.8 Score=40.61 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=22.6
Q ss_pred EEEeeCCCCCChHHHHHHHHhhhhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRYMNF 42 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~l~~ 42 (193)
++-|.|+.+||||+++..+..++..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~ 71 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIS 71 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 7889999999999999999998764
No 495
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=80.98 E-value=1.1 Score=37.26 Aligned_cols=26 Identities=12% Similarity=-0.074 Sum_probs=21.9
Q ss_pred CceEEEeeCCCCCChHHHHHHHHhhh
Q psy5032 15 NDSKNSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 15 ~V~VVSV~G~~rtGKSfLLN~Ll~~l 40 (193)
+-..|-+.||.+||||+|+..+.+.+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh
Confidence 34457789999999999999999864
No 496
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=80.74 E-value=1.2 Score=36.37 Aligned_cols=22 Identities=18% Similarity=-0.152 Sum_probs=20.0
Q ss_pred EEEeeCCCCCChHHHHHHHHhh
Q psy5032 18 KNSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 18 VVSV~G~~rtGKSfLLN~Ll~~ 39 (193)
.|.|+|+.++|||.|...|...
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999975
No 497
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.50 E-value=1.1 Score=35.55 Aligned_cols=22 Identities=14% Similarity=-0.041 Sum_probs=19.6
Q ss_pred EEeeCCCCCChHHHHHHHHhhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l 40 (193)
|-+.|+.++|||+|+..+...+
T Consensus 42 vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5599999999999999999864
No 498
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=80.43 E-value=0.83 Score=36.25 Aligned_cols=20 Identities=25% Similarity=0.145 Sum_probs=18.2
Q ss_pred EEeeCCCCCChHHHHHHHHh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLR 38 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~ 38 (193)
+-|.|..|||||.+.-+|..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 56899999999999999985
No 499
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=80.05 E-value=1 Score=33.20 Aligned_cols=21 Identities=14% Similarity=0.023 Sum_probs=18.6
Q ss_pred EEeeCCCCCChHHHHHHHHhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRY 39 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~ 39 (193)
|=+.|+.+||||+++..+..+
T Consensus 27 vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999874
No 500
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=80.01 E-value=0.86 Score=36.66 Aligned_cols=22 Identities=14% Similarity=-0.032 Sum_probs=19.5
Q ss_pred EEeeCCCCCChHHHHHHHHhhh
Q psy5032 19 NSEKSAFRKGKSFLLDFLLRYM 40 (193)
Q Consensus 19 VSV~G~~rtGKSfLLN~Ll~~l 40 (193)
|-+.|+.+||||+|+..+...+
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 4588999999999999999864
Done!