RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5032
(193 letters)
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 92.8 bits (230), Expect = 9e-24
Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 26/132 (19%)
Query: 24 AFRKGKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSHV 83
+R GKS+L++ L GFS + T GI MW
Sbjct: 40 LYRTGKSYLMNKLAGKKK---------------------GFSLGSTVQSHTKGIWMWCVP 78
Query: 84 YIATLPTGEKAAVILLDTQGTFDSE-STVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQ 142
+ P ++LLDT+G D E ++ + +FAL+ +LSS +YN I + +
Sbjct: 79 H----PKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMD 134
Query: 143 HLQLFTEYGRLA 154
L TE
Sbjct: 135 QLYYVTELTHRI 146
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 28.9 bits (64), Expect = 0.41
Identities = 22/130 (16%), Positives = 38/130 (29%), Gaps = 14/130 (10%)
Query: 28 GKSFLLDFLLRYMNFTYIEEAPSGDWMGPDDVPLEGFSWRGGSERDTTGILMWSH----- 82
GKS L D L++ +A + E RG + + T L
Sbjct: 29 GKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQE----RGITIKSTAISLYSEMSDEDV 84
Query: 83 VYIATLPTGEKAAVILLDTQGTFDSESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQ 142
I G + L+D+ G D S V V ++ + + + +
Sbjct: 85 KEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDG-----ALVVVDTIEGVCVQTET 139
Query: 143 HLQLFTEYGR 152
L+
Sbjct: 140 VLRQALGERI 149
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 25.3 bits (55), Expect = 1.9
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 126 SIQIYNLSQNIQEDDLQHLQLFTEYGR 152
S+ + +L ++ E L + F+ G
Sbjct: 2 SLYVGDLHPDVTEAMLY--EKFSPAGP 26
>d1rf8b_ a.210.1.1 (B:) Eukaryotic initiation factor 4f subunit
eIF4g, eIF4e-binding domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 100
Score = 25.2 bits (55), Expect = 2.9
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 13 SDNDSKNSEKSAFRKGKSFLLDFLLRYMNFTYIEEAPSGDWM 54
+ E + G +FLL F + +W+
Sbjct: 50 GPDIKYKKEHVKYTYGPTFLLQFK------DKLNVKADAEWV 85
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 24.6 bits (53), Expect = 3.8
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 125 SSIQIYNLSQNIQEDDLQHLQLFTEYGRL 153
+++ + L Q++ + +L LF G +
Sbjct: 3 TNLIVNYLPQDMTDRELY--ALFRAIGPI 29
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 24.5 bits (53), Expect = 4.5
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 125 SSIQIYNLSQNIQEDDLQHLQLFTEYGRL 153
+++ + NL + I +D L +F +YG +
Sbjct: 7 TNLYVTNLPRTITDDQLD--TIFGKYGSI 33
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 24.2 bits (52), Expect = 5.2
Identities = 7/23 (30%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 129 IYNLSQNIQEDDLQHLQLFTEYG 151
I NL+ + E+ L+ +F++ G
Sbjct: 3 IKNLNFSTTEETLK--GVFSKVG 23
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 24.2 bits (52), Expect = 5.3
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 129 IYNLSQNIQEDDLQHLQLFTEYG 151
I LS ++ L+ + F ++G
Sbjct: 5 IGGLSWQTTQEGLR--EYFGQFG 25
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 24.2 bits (52), Expect = 6.7
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 12/44 (27%)
Query: 107 SESTVRDCATVFALSTMLSSIQIYNLSQNIQEDDLQHLQLFTEY 150
+ VR T+ NLS NI ED+L+ ++F +
Sbjct: 9 TSKKVRAARTLL----------AKNLSFNITEDELK--EVFEDA 40
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 23.9 bits (51), Expect = 6.9
Identities = 8/28 (28%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 125 SSIQIYNLSQNIQEDDLQHLQLFTEYGR 152
+++ + L + + + +L+ QLF++YGR
Sbjct: 7 ANLYVSGLPKTMTQKELE--QLFSQYGR 32
>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY,
DsbE) {Escherichia coli [TaxId: 562]}
Length = 136
Score = 24.6 bits (52), Expect = 7.1
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 14 DNDSKNSEKSAFRKGKSFLLDF 35
DN + + +GK LL+
Sbjct: 6 DNPGQFYQADVLTQGKPVLLNV 27
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 23.8 bits (51), Expect = 7.1
Identities = 3/27 (11%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 125 SSIQIYNLSQNIQEDDLQHLQLFTEYG 151
++ ++ + + ++ Q F+ +G
Sbjct: 19 CTVYCGGIASGLTDQLMR--QTFSPFG 43
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 23.7 bits (51), Expect = 7.2
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 127 IQIYNLSQNIQEDDLQHLQLFTEYG 151
+ + NL + + D+Q +LF E+G
Sbjct: 3 LLVSNLDFGVSDADIQ--ELFAEFG 25
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 23.8 bits (51), Expect = 7.7
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 126 SIQIYNLSQNIQEDDLQHLQLFTEYG 151
++ + L + + E L +LF + G
Sbjct: 11 TVYVGGLDEKVSEPLLW--ELFLQAG 34
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 23.7 bits (51), Expect = 7.8
Identities = 6/27 (22%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 125 SSIQIYNLSQNIQEDDLQHLQLFTEYG 151
S I + N+ + +++ +LF+ +G
Sbjct: 9 SKILVRNIPFQANQREIR--ELFSTFG 33
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 23.8 bits (51), Expect = 8.1
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 125 SSIQIYNLSQNIQEDDLQHLQLFTEYG 151
++ + NLS E+ + +LF++ G
Sbjct: 8 CTLYVGNLSFYTTEEQIY--ELFSKSG 32
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 23.4 bits (50), Expect = 9.6
Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 125 SSIQIYNLSQNIQEDDLQHLQLFTEYGR 152
S + + NL +I E++++ +LF +YG+
Sbjct: 9 SRLFVGNLPPDITEEEMR--KLFEKYGK 34
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.394
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 686,650
Number of extensions: 29737
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 18
Length of query: 193
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 112
Effective length of database: 1,295,466
Effective search space: 145092192
Effective search space used: 145092192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)