Query psy5036
Match_columns 176
No_of_seqs 182 out of 1008
Neff 5.0
Searched_HMMs 29240
Date Sat Aug 17 00:09:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5036.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5036hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lef_A LEF-1 HMG, protein (lym 99.9 8.3E-27 2.8E-31 167.0 6.1 83 62-147 1-86 (86)
2 3u2b_C Transcription factor SO 99.9 8.2E-25 2.8E-29 153.4 4.8 73 62-134 1-76 (79)
3 1hry_A Human SRY; DNA, DNA-bin 99.9 1.7E-24 5.8E-29 151.0 4.9 72 61-132 2-76 (76)
4 1j46_A SRY, sex-determining re 99.9 3.7E-24 1.3E-28 153.0 6.0 75 61-135 2-79 (85)
5 1i11_A Transcription factor SO 99.9 1E-24 3.4E-29 154.3 2.9 75 61-135 2-79 (81)
6 3f27_D Transcription factor SO 99.9 3E-24 1E-28 152.0 4.2 76 60-135 3-81 (83)
7 1gt0_D Transcription factor SO 99.9 9.4E-24 3.2E-28 148.8 6.0 74 62-135 1-77 (80)
8 2e6o_A HMG box-containing prot 99.9 8.8E-24 3E-28 151.9 5.6 73 58-130 12-87 (87)
9 1wz6_A HMG-box transcription f 99.9 7.1E-24 2.4E-28 150.3 4.3 77 59-135 3-82 (82)
10 4euw_A Transcription factor SO 99.9 1.1E-23 3.8E-28 157.1 4.9 78 58-135 24-104 (106)
11 4a3n_A Transcription factor SO 99.9 3E-23 1E-27 142.3 2.9 68 62-129 1-71 (71)
12 2co9_A Thymus high mobility gr 99.8 4.8E-22 1.7E-26 146.9 3.2 80 56-135 10-92 (102)
13 1k99_A Upstream binding factor 99.8 5.3E-22 1.8E-26 146.3 3.1 76 58-133 5-90 (99)
14 2crj_A SWI/SNF-related matrix- 99.8 8.9E-23 3E-27 148.0 -1.1 78 59-136 3-83 (92)
15 1hme_A High mobility group pro 99.8 5.1E-22 1.7E-26 138.8 1.8 72 60-131 3-77 (77)
16 1aab_A High mobility group pro 99.8 1.1E-20 3.8E-25 134.0 5.7 73 59-131 3-80 (83)
17 2cs1_A PMS1 protein homolog 1; 99.8 2.2E-21 7.6E-26 140.6 0.7 73 60-132 4-79 (92)
18 1cg7_A Protein (NON histone pr 99.8 5.1E-21 1.7E-25 139.1 1.4 75 57-131 14-91 (93)
19 2eqz_A High mobility group pro 99.8 1.2E-20 4.2E-25 135.0 3.2 72 58-129 10-86 (86)
20 1wxl_A Single-strand recogniti 99.8 1.2E-20 4.2E-25 131.1 2.1 69 61-131 1-72 (73)
21 1ckt_A High mobility group 1 p 99.8 1.4E-20 4.8E-25 129.4 1.6 66 63-128 1-71 (71)
22 3nm9_A HMG-D, high mobility gr 99.8 4.9E-21 1.7E-25 133.1 -1.1 68 62-131 2-72 (73)
23 1wgf_A Upstream binding factor 99.8 2.2E-20 7.7E-25 135.0 2.3 72 57-128 14-88 (90)
24 2lhj_A High mobility group pro 99.8 1.2E-20 4.2E-25 137.9 -0.3 75 57-131 16-95 (97)
25 2gzk_A Sex-determining region 99.7 8E-19 2.7E-23 137.3 4.7 73 61-133 2-77 (159)
26 3fgh_A Transcription factor A, 99.7 4.6E-19 1.6E-23 121.0 1.9 63 62-128 1-66 (67)
27 2yrq_A High mobility group pro 99.7 5E-19 1.7E-23 140.6 0.8 73 59-131 97-172 (173)
28 2gzk_A Sex-determining region 99.7 8.4E-19 2.9E-23 137.2 1.4 73 58-130 83-158 (159)
29 2d7l_A WD repeat and HMG-box D 99.7 9E-19 3.1E-23 125.5 0.9 57 61-117 3-63 (81)
30 1v64_A Nucleolar transcription 99.7 2.2E-18 7.5E-23 129.1 1.8 73 56-131 9-84 (108)
31 2cto_A Novel protein; high mob 99.7 1E-17 3.6E-22 123.3 3.8 66 59-125 6-76 (93)
32 1v63_A Nucleolar transcription 99.7 5.3E-18 1.8E-22 125.5 2.2 69 61-131 6-77 (101)
33 2yrq_A High mobility group pro 99.7 8.1E-18 2.8E-22 133.6 3.3 74 58-131 10-88 (173)
34 1l8y_A Upstream binding factor 99.7 6.5E-18 2.2E-22 124.3 2.0 72 62-134 3-77 (91)
35 2yuk_A Myeloid/lymphoid or mix 99.6 9.5E-18 3.3E-22 123.1 -0.7 65 58-124 17-84 (90)
36 3tmm_A Transcription factor A, 99.6 4.7E-17 1.6E-21 136.2 -1.2 72 59-130 37-111 (238)
37 3tq6_A Transcription factor A, 99.6 1.5E-16 5.1E-21 131.3 0.7 70 61-130 7-79 (214)
38 3tq6_A Transcription factor A, 99.5 9E-16 3.1E-20 126.6 1.1 68 60-131 111-181 (214)
39 3tmm_A Transcription factor A, 99.5 1.1E-15 3.7E-20 127.9 -1.0 68 60-131 143-213 (238)
40 2qgu_A Probable signal peptide 43.4 11 0.00036 30.3 1.9 45 86-130 70-118 (211)
41 3nm8_A Tyrosinase; TYPE3 coppe 31.0 38 0.0013 28.8 3.5 22 98-119 10-31 (303)
No 1
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.93 E-value=8.3e-27 Score=166.99 Aligned_cols=83 Identities=54% Similarity=0.868 Sum_probs=77.4
Q ss_pred CCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCCCCcc
Q psy5036 62 VGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGA 138 (176)
Q Consensus 62 ~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~~~~~ 138 (176)
.+||||+||||||++++|..|.++ |+++++|||++| +|++|+++||++|.++|++++++|.++||+|+|+|+++
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~~~--- 77 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYG--- 77 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSSTT---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC---
Confidence 479999999999999999999999 999999999999 99999999999999999999999999999999999988
Q ss_pred ccccccccc
Q psy5036 139 KKKKRKKER 147 (176)
Q Consensus 139 kkkkrk~~~ 147 (176)
++++|++++
T Consensus 78 ~~kkrkkd~ 86 (86)
T 2lef_A 78 KKKKRKREK 86 (86)
T ss_dssp TSCCSSCCC
T ss_pred CCccccccC
Confidence 456666553
No 2
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.90 E-value=8.2e-25 Score=153.44 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=70.8
Q ss_pred CCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCC
Q psy5036 62 VGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNY 134 (176)
Q Consensus 62 ~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~ 134 (176)
++||||+||||||++++|.+|..+ |+++++||+++| +|++|+++||++|.++|++++++|.++||+|+|+|+.
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~Prk 76 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPRK 76 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCC
Confidence 589999999999999999999999 999999999999 9999999999999999999999999999999999864
No 3
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.90 E-value=1.7e-24 Score=151.05 Aligned_cols=72 Identities=19% Similarity=0.343 Sum_probs=68.8
Q ss_pred CCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCC
Q psy5036 61 HVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARD 132 (176)
Q Consensus 61 ~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~ 132 (176)
+++||||+||||||++++|..|+.+ |+++++||+++| +|++|+++||++|.++|++++++|.++||+|+|+|
T Consensus 2 p~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P 76 (76)
T 1hry_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCCC-
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 5789999999999999999999999 999999999999 99999999999999999999999999999999986
No 4
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.90 E-value=3.7e-24 Score=153.04 Aligned_cols=75 Identities=19% Similarity=0.318 Sum_probs=72.3
Q ss_pred CCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCCC
Q psy5036 61 HVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG 135 (176)
Q Consensus 61 ~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~~ 135 (176)
+++||||+||||||++++|..|.++ |+++++||+++| +|++|+++||++|.++|++++++|..+||+|+|+++..
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~prr~ 79 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRK 79 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCC
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCc
Confidence 4689999999999999999999999 999999999999 99999999999999999999999999999999999765
No 5
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.89 E-value=1e-24 Score=154.34 Aligned_cols=75 Identities=17% Similarity=0.326 Sum_probs=65.9
Q ss_pred CCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCCC
Q psy5036 61 HVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG 135 (176)
Q Consensus 61 ~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~~ 135 (176)
.++||||+||||||++++|.+|.++ |+++++||+++| +|++|+++||++|+++|++++++|.++||+|+|+|+..
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~pr~~ 79 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPK 79 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC-------
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeccCCC
Confidence 4689999999999999999999999 999999999999 99999999999999999999999999999999998543
No 6
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.89 E-value=3e-24 Score=152.04 Aligned_cols=76 Identities=17% Similarity=0.285 Sum_probs=69.5
Q ss_pred CCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCCC
Q psy5036 60 WHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG 135 (176)
Q Consensus 60 k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~~ 135 (176)
..++||||+||||||++++|..|..+ |+++++||+++| +|++|+++||++|.++|++++++|.++||+|+|+|+..
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P~~k 81 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRR 81 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCccC
Confidence 35689999999999999999999999 999999999999 99999999999999999999999999999999998654
No 7
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.89 E-value=9.4e-24 Score=148.79 Aligned_cols=74 Identities=16% Similarity=0.274 Sum_probs=71.2
Q ss_pred CCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCCC
Q psy5036 62 VGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG 135 (176)
Q Consensus 62 ~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~~ 135 (176)
++||||+||||||++++|..|.++ |+++++||+++| +|++|+++||++|.++|++++++|.++||+|+|+|+..
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~r~ 77 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRK 77 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCC
Confidence 479999999999999999999999 999999999999 99999999999999999999999999999999998655
No 8
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.89 E-value=8.8e-24 Score=151.89 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=70.2
Q ss_pred CCCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCcc
Q psy5036 58 MSWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSA 130 (176)
Q Consensus 58 ~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~ 130 (176)
..+.++||||+||||||++++|.+|..+ |+++++||+++| +|++|+++||++|+++|++++++|+++||+|+|
T Consensus 12 ~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yky 87 (87)
T 2e6o_A 12 ATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCWK 87 (87)
T ss_dssp CCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence 4567889999999999999999999999 999999999999 999999999999999999999999999999997
No 9
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.88 E-value=7.1e-24 Score=150.28 Aligned_cols=77 Identities=18% Similarity=0.333 Sum_probs=73.2
Q ss_pred CCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCCC
Q psy5036 59 SWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG 135 (176)
Q Consensus 59 ~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~~ 135 (176)
...++||||+||||||++++|..|.++ |+++++||+++| +|++|+++||++|.++|++++++|.++||+|+++|+.+
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p~~~ 82 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGPSSG 82 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCTTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCC
Confidence 356789999999999999999999999 999999999999 99999999999999999999999999999999998764
No 10
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.88 E-value=1.1e-23 Score=157.07 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=68.3
Q ss_pred CCCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCC
Q psy5036 58 MSWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNY 134 (176)
Q Consensus 58 ~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~ 134 (176)
..++++||||+||||||++++|.+|+.+ |+++++||+++| +|++|+++||++|+++|++++++|+++||+|+|+|++
T Consensus 24 ~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~Prr 103 (106)
T 4euw_A 24 SKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRR 103 (106)
T ss_dssp ----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC----
T ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcCCCC
Confidence 5667899999999999999999999999 999999999999 9999999999999999999999999999999999865
Q ss_pred C
Q psy5036 135 G 135 (176)
Q Consensus 135 ~ 135 (176)
.
T Consensus 104 k 104 (106)
T 4euw_A 104 R 104 (106)
T ss_dssp -
T ss_pred C
Confidence 5
No 11
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.87 E-value=3e-23 Score=142.34 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=60.5
Q ss_pred CCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCc
Q psy5036 62 VGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWS 129 (176)
Q Consensus 62 ~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk 129 (176)
++||||+||||||++++|..|..+ |+++++||+++| +|++|+++||++|.++|++++++|.++||+|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 479999999999999999999999 999999999999 99999999999999999999999999999996
No 12
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=4.8e-22 Score=146.91 Aligned_cols=80 Identities=10% Similarity=0.138 Sum_probs=74.2
Q ss_pred CCCCCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCC
Q psy5036 56 SIMSWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARD 132 (176)
Q Consensus 56 ~~~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~ 132 (176)
....++++||||+||||||++++|..|.++ |+++++||+++| +|++|+++||++|.++|++++++|.++|++|++..
T Consensus 10 k~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~ 89 (102)
T 2co9_A 10 KKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRASL 89 (102)
T ss_dssp SSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345677889999999999999999999999 999999999999 99999999999999999999999999999999876
Q ss_pred CCC
Q psy5036 133 NYG 135 (176)
Q Consensus 133 n~~ 135 (176)
...
T Consensus 90 ~~~ 92 (102)
T 2co9_A 90 VSK 92 (102)
T ss_dssp TSS
T ss_pred ccc
Confidence 543
No 13
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.84 E-value=5.3e-22 Score=146.34 Aligned_cols=76 Identities=11% Similarity=0.086 Sum_probs=69.6
Q ss_pred CCCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHH-------HHHHCCC
Q psy5036 58 MSWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQL-------HMELYPG 127 (176)
Q Consensus 58 ~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~-------h~~~~P~ 127 (176)
..++++||||+||||||++++|..|.++ |+++++||+++| +|++||++||++|.++|++++++ |...+|+
T Consensus 5 ~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~~P~ 84 (99)
T 1k99_A 5 KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPD 84 (99)
T ss_dssp CSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4567889999999999999999999999 999999999999 99999999999999999999999 6667777
Q ss_pred CccCCC
Q psy5036 128 WSARDN 133 (176)
Q Consensus 128 Yk~~~n 133 (176)
|+|++.
T Consensus 85 ~~~~~~ 90 (99)
T 1k99_A 85 LIQNAK 90 (99)
T ss_dssp CSCCCC
T ss_pred ccCCCc
Confidence 777664
No 14
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.84 E-value=8.9e-23 Score=147.98 Aligned_cols=78 Identities=15% Similarity=0.309 Sum_probs=73.5
Q ss_pred CCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCCC
Q psy5036 59 SWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG 135 (176)
Q Consensus 59 ~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~~ 135 (176)
.++++||||+||||||++++|..|.++ |+++++||+++| +|++|+++||++|.++|++++++|.++|++|++++.|.
T Consensus 3 kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~~~ 82 (92)
T 2crj_A 3 SGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYK 82 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 356789999999999999999999999 999999999999 99999999999999999999999999999999988765
Q ss_pred C
Q psy5036 136 Y 136 (176)
Q Consensus 136 ~ 136 (176)
.
T Consensus 83 ~ 83 (92)
T 2crj_A 83 V 83 (92)
T ss_dssp C
T ss_pred H
Confidence 3
No 15
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.83 E-value=5.1e-22 Score=138.75 Aligned_cols=72 Identities=14% Similarity=0.199 Sum_probs=68.9
Q ss_pred CCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036 60 WHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131 (176)
Q Consensus 60 k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~ 131 (176)
++++||||+||||||++++|..|..+ |+++++||+++| +|++|+++||++|.++|++++++|.++|++|+.+
T Consensus 3 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k 77 (77)
T 1hme_A 3 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 77 (77)
T ss_dssp CSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56789999999999999999999999 999999999999 9999999999999999999999999999999853
No 16
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.82 E-value=1.1e-20 Score=134.03 Aligned_cols=73 Identities=5% Similarity=0.167 Sum_probs=68.4
Q ss_pred CCCCCCCCCCchhhhhhhhhccchhhc-cCCC--ccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036 59 SWHVGSVNFICNFILIGPQGQTKPEAR-SGNE--ITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131 (176)
Q Consensus 59 ~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~--~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~ 131 (176)
.++++||||+||||||++++|..|..+ |+++ ++||+++| +|++|+++||++|.++|++++++|.+++++|+..
T Consensus 3 kdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 3 GDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356789999999999999999999999 9987 49999999 9999999999999999999999999999999765
No 17
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-21 Score=140.61 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=69.8
Q ss_pred CCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCC
Q psy5036 60 WHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARD 132 (176)
Q Consensus 60 k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~ 132 (176)
..++||||+||||||++++|..|+.+ |++++.||+++| +|++|+++||++|.++|++++++|.+++++|+.+.
T Consensus 4 ~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~ 79 (92)
T 2cs1_A 4 GSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQE 79 (92)
T ss_dssp CCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45789999999999999999999999 999999999999 99999999999999999999999999999998864
No 18
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.80 E-value=5.1e-21 Score=139.13 Aligned_cols=75 Identities=12% Similarity=0.182 Sum_probs=70.8
Q ss_pred CCCCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036 57 IMSWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131 (176)
Q Consensus 57 ~~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~ 131 (176)
...+.++||||+||||||++++|..|..+ |+++++||+++| +|++|+++||++|.++|++++++|.+++++|+.+
T Consensus 14 ~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~~~ 91 (93)
T 1cg7_A 14 KKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNAT 91 (93)
T ss_dssp CCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35677889999999999999999999999 999999999999 9999999999999999999999999999999754
No 19
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.2e-20 Score=134.98 Aligned_cols=72 Identities=7% Similarity=0.140 Sum_probs=67.4
Q ss_pred CCCCCCCCCCCchhhhhhhhhccchhhc-cCCC--ccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCc
Q psy5036 58 MSWHVGSVNFICNFILIGPQGQTKPEAR-SGNE--ITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWS 129 (176)
Q Consensus 58 ~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~--~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk 129 (176)
..++++||||+||||||++++|..|+.+ |+++ ++||+++| +|++|+++||++|+++|++++++|.+++++|+
T Consensus 10 ~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y~ 86 (86)
T 2eqz_A 10 KGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG 86 (86)
T ss_dssp SCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567889999999999999999999999 9987 49999999 99999999999999999999999999998884
No 20
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.79 E-value=1.2e-20 Score=131.06 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=65.7
Q ss_pred CCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036 61 HVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131 (176)
Q Consensus 61 ~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~ 131 (176)
+++||||+||||||++++|..|+.+ |+++++||+++| +|++| +||++|.++|++++++|.+++++|+.+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3679999999999999999999999 999999999999 99999 999999999999999999999999754
No 21
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.79 E-value=1.4e-20 Score=129.37 Aligned_cols=66 Identities=6% Similarity=0.234 Sum_probs=63.5
Q ss_pred CCCCCCchhhhhhhhhccchhhc-cCCCc--cccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q psy5036 63 GSVNFICNFILIGPQGQTKPEAR-SGNEI--TNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGW 128 (176)
Q Consensus 63 ~~KRPlNAFmLF~ke~R~kv~~e-P~~~~--~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Y 128 (176)
+||||+||||||++++|..|+.+ |++++ +||+++| +|++|+++||++|.++|++++++|.+++.+|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 48999999999999999999999 99876 9999999 9999999999999999999999999999987
No 22
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.79 E-value=4.9e-21 Score=133.09 Aligned_cols=68 Identities=10% Similarity=0.134 Sum_probs=65.0
Q ss_pred CCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036 62 VGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131 (176)
Q Consensus 62 ~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~ 131 (176)
+.||||+||||||++++|.+|..+ |+++++||+++| +|++|++ |++|+++|++++++|++++++|+..
T Consensus 2 ~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 2 DKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999 999999999999 9999998 9999999999999999999999764
No 23
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.78 E-value=2.2e-20 Score=134.97 Aligned_cols=72 Identities=7% Similarity=0.098 Sum_probs=67.3
Q ss_pred CCCCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q psy5036 57 IMSWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGW 128 (176)
Q Consensus 57 ~~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Y 128 (176)
...++++||||+||||||++++|..|..+ |+++++||+++| +|++|+++||++|+++|++++++|+++|-.+
T Consensus 14 ~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~~ 88 (90)
T 1wgf_A 14 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGPS 88 (90)
T ss_dssp CSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677889999999999999999999999 999999999999 9999999999999999999999999988654
No 24
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.78 E-value=1.2e-20 Score=137.89 Aligned_cols=75 Identities=13% Similarity=0.224 Sum_probs=70.6
Q ss_pred CCCCCCCCCCCCchhhhhhhhhccchhhc-cCCC--ccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036 57 IMSWHVGSVNFICNFILIGPQGQTKPEAR-SGNE--ITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131 (176)
Q Consensus 57 ~~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~--~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~ 131 (176)
...++++||||+||||||++++|..|..+ |+++ ++||+++| +|++|+++||++|+++|++++++|.++|++|+.+
T Consensus 16 ~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y~~~ 95 (97)
T 2lhj_A 16 AKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAEYAQR 95 (97)
T ss_dssp TTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677889999999999999999999999 9999 99999999 9999999999999999999999999999999754
No 25
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.74 E-value=8e-19 Score=137.28 Aligned_cols=73 Identities=19% Similarity=0.346 Sum_probs=69.9
Q ss_pred CCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCC
Q psy5036 61 HVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDN 133 (176)
Q Consensus 61 ~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n 133 (176)
+++||||+||||||+++.|.+|..+ |+++++|||++| +|++|+++||++|+++|+.++++|..+|++|++.+.
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~k~ 77 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKG 77 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCCCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccccc
Confidence 4689999999999999999999999 999999999999 999999999999999999999999999999998763
No 26
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.73 E-value=4.6e-19 Score=121.04 Aligned_cols=63 Identities=11% Similarity=0.242 Sum_probs=59.0
Q ss_pred CCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q psy5036 62 VGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGW 128 (176)
Q Consensus 62 ~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Y 128 (176)
++||||+||||||++++|..|..+ | +||+++| +|++|+++||++|.++|++++++|.+++..|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999876 5 6999999 9999999999999999999999999998776
No 27
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5e-19 Score=140.56 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=70.0
Q ss_pred CCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036 59 SWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131 (176)
Q Consensus 59 ~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~ 131 (176)
.++++||||+||||||++++|..|..+ |+++++||+++| +|++|+++||++|.++|++++++|+.+|++|+++
T Consensus 97 kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~k 172 (173)
T 2yrq_A 97 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 172 (173)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466889999999999999999999999 999999999999 9999999999999999999999999999999875
No 28
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.71 E-value=8.4e-19 Score=137.15 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=69.3
Q ss_pred CCCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCcc
Q psy5036 58 MSWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSA 130 (176)
Q Consensus 58 ~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~ 130 (176)
..+.+.||||+||||||++++|.+|..+ |+++++||+++| +|++|+++||++|.++|++++++|..++++|+.
T Consensus 83 ~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 83 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp SCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566889999999999999999999999 999999999999 999999999999999999999999999999875
No 29
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=9e-19 Score=125.51 Aligned_cols=57 Identities=14% Similarity=0.065 Sum_probs=54.7
Q ss_pred CCCCCCCCchhhhhhhhhccchhhc-cCCC-ccccccce--eccCCCHHHHHHHHHHHHHH
Q psy5036 61 HVGSVNFICNFILIGPQGQTKPEAR-SGNE-ITNKNQMI--QWHSLTREEQAKYYEKARQE 117 (176)
Q Consensus 61 ~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~-~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ 117 (176)
.++||||+||||||++++|.+|+.+ |+++ ++||+++| +|++|+++||++|+++|+++
T Consensus 3 ~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 3 SGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5679999999999999999999999 9998 99999999 99999999999999999987
No 30
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.70 E-value=2.2e-18 Score=129.11 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=67.3
Q ss_pred CCCCCCCCC-CCCCchhhhhhhhhccchhhccCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036 56 SIMSWHVGS-VNFICNFILIGPQGQTKPEARSGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131 (176)
Q Consensus 56 ~~~~k~~~~-KRPlNAFmLF~ke~R~kv~~eP~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~ 131 (176)
......++| |||+||||||++++|..|. +++++||+++| +|++|+++||++|+++|++++++|..++++|+..
T Consensus 9 kk~kd~~~P~KrP~say~lF~~e~r~~~k---~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~ 84 (108)
T 1v64_A 9 LKDKFDGRPTKPPPNSYSLYCAELMANMK---DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLES 84 (108)
T ss_dssp SSCCTTTSCCCCCSSHHHHHHHHHHHHCT---TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667788 9999999999999999987 78999999999 9999999999999999999999999999999764
No 31
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1e-17 Score=123.28 Aligned_cols=66 Identities=21% Similarity=0.189 Sum_probs=61.4
Q ss_pred CCCCCCCCCCchhhhhhhhhccchhhccCCCccccccce-----eccCCCHHHHHHHHHHHHHHHHHHHHHC
Q psy5036 59 SWHVGSVNFICNFILIGPQGQTKPEARSGNEITNKNQMI-----QWHSLTREEQAKYYEKARQERQLHMELY 125 (176)
Q Consensus 59 ~k~~~~KRPlNAFmLF~ke~R~kv~~eP~~~~~eISKil-----~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~ 125 (176)
...++||||+||||||++++|.+|+.+ +++++||+++| +|++|+++||++|+++|+++|++|+++.
T Consensus 6 ~~~~~PKRP~sAf~lF~~e~R~~ik~e-~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 6 SGMPNRKASRNAYYFFVQEKIPELRRR-GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp CCCCCCCSSCCHHHHHHHTTHHHHHHH-TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 345679999999999999999999988 89999999986 9999999999999999999999999976
No 32
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.68 E-value=5.3e-18 Score=125.50 Aligned_cols=69 Identities=7% Similarity=0.151 Sum_probs=62.3
Q ss_pred CCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036 61 HVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131 (176)
Q Consensus 61 ~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~ 131 (176)
..+||||+||||||+++++. ..+ ++++++||+++| +|++|+++||++|+++|++++++|+++|++|...
T Consensus 6 ~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~ 77 (101)
T 1v63_A 6 SGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKS 77 (101)
T ss_dssp CSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45689999999999999964 344 678899999999 9999999999999999999999999999999764
No 33
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=8.1e-18 Score=133.55 Aligned_cols=74 Identities=5% Similarity=0.143 Sum_probs=69.7
Q ss_pred CCCCCCCCCCCchhhhhhhhhccchhhc-cC--CCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036 58 MSWHVGSVNFICNFILIGPQGQTKPEAR-SG--NEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131 (176)
Q Consensus 58 ~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~--~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~ 131 (176)
..++++||||+||||||++++|..|..+ |+ ++++||+++| +|++|+++||++|.++|+.++++|..++++|...
T Consensus 10 k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 88 (173)
T 2yrq_A 10 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 88 (173)
T ss_dssp SCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4567889999999999999999999999 98 5899999999 9999999999999999999999999999999864
No 34
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.68 E-value=6.5e-18 Score=124.35 Aligned_cols=72 Identities=10% Similarity=0.028 Sum_probs=67.6
Q ss_pred CCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccCCCC
Q psy5036 62 VGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNY 134 (176)
Q Consensus 62 ~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~~n~ 134 (176)
+.||||++|||||+++.|..+..+ |+ +++||++.| +|++|+++||++|+++|++++++|++++.+|+.....
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~ 77 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAA 77 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 468999999999999999999999 98 999999999 9999999999999999999999999999999876543
No 35
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.64 E-value=9.5e-18 Score=123.09 Aligned_cols=65 Identities=14% Similarity=0.066 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCchhhhhhhhhccchhhc-cCCC--ccccccceeccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy5036 58 MSWHVGSVNFICNFILIGPQGQTKPEAR-SGNE--ITNKNQMIQWHSLTREEQAKYYEKARQERQLHMEL 124 (176)
Q Consensus 58 ~~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~--~~eISKil~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~ 124 (176)
.++++.||||+|||||||+++|.+|+.+ |+++ ++||+ -+|++|+++||++|+++|++++++|+..
T Consensus 17 ~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs--e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 17 EKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA--KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH--HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999999999999 9999 99998 7899999999999999999999999873
No 36
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.60 E-value=4.7e-17 Score=136.24 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=68.3
Q ss_pred CCCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCcc
Q psy5036 59 SWHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSA 130 (176)
Q Consensus 59 ~k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~ 130 (176)
..++.||||+||||||++++|.+|+.+ |+++++||+++| +|++|+++||.+|+++|++++++|+++|.+|..
T Consensus 37 ~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~ 111 (238)
T 3tmm_A 37 VLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKE 111 (238)
T ss_dssp HHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345679999999999999999999999 999999999999 999999999999999999999999999999964
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.58 E-value=1.5e-16 Score=131.30 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=67.0
Q ss_pred CCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCcc
Q psy5036 61 HVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSA 130 (176)
Q Consensus 61 ~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~ 130 (176)
++.||||+||||||++++|.+|..+ |+++++||+++| +|++|+++||.+|+++|+.++++|.+++++|..
T Consensus 7 p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~ 79 (214)
T 3tq6_A 7 ASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKE 79 (214)
T ss_dssp HHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcc
Confidence 3578999999999999999999999 999999999999 999999999999999999999999999999964
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.53 E-value=9e-16 Score=126.64 Aligned_cols=68 Identities=10% Similarity=0.215 Sum_probs=63.5
Q ss_pred CCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036 60 WHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131 (176)
Q Consensus 60 k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~ 131 (176)
..+.||||+|||||||+++|.+|..+ |+ ||+++| +|++|+++||++|+++|++++++|+.++++|+..
T Consensus 111 dp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~ 181 (214)
T 3tq6_A 111 LLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 181 (214)
T ss_dssp HTTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999876 54 899999 9999999999999999999999999999999875
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.50 E-value=1.1e-15 Score=127.92 Aligned_cols=68 Identities=10% Similarity=0.215 Sum_probs=63.5
Q ss_pred CCCCCCCCCchhhhhhhhhccchhhc-cCCCccccccce--eccCCCHHHHHHHHHHHHHHHHHHHHHCCCCccC
Q psy5036 60 WHVGSVNFICNFILIGPQGQTKPEAR-SGNEITNKNQMI--QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131 (176)
Q Consensus 60 k~~~~KRPlNAFmLF~ke~R~kv~~e-P~~~~~eISKil--~Wk~Ls~eEK~~Y~~~A~k~ke~h~~~~P~Yk~~ 131 (176)
..++||||+|||||||+++|.+|..+ |+ ||+++| +|++|+++||++|+++|++++++|++++++|+.+
T Consensus 143 dp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k 213 (238)
T 3tmm_A 143 LLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 213 (238)
T ss_dssp HTTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999876 54 899999 9999999999999999999999999999999885
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=43.36 E-value=11 Score=30.28 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=35.8
Q ss_pred cCCCccccccce---eccCCCHHHHHHHHHHHHHH-HHHHHHHCCCCcc
Q psy5036 86 SGNEITNKNQMI---QWHSLTREEQAKYYEKARQE-RQLHMELYPGWSA 130 (176)
Q Consensus 86 P~~~~~eISKil---~Wk~Ls~eEK~~Y~~~A~k~-ke~h~~~~P~Yk~ 130 (176)
|-..+..+++.+ -|+.+|+++|+.|.+..+.. ..-|-..+-.|..
T Consensus 70 p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~ 118 (211)
T 2qgu_A 70 PRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRN 118 (211)
T ss_dssp GGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred hhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 667888898877 89999999999999766554 4567777777753
No 41
>3nm8_A Tyrosinase; TYPE3 copper proteins, oxidoreductase; 2.00A {Bacillus megaterium} PDB: 3npy_A 3nq0_A 3nq1_A* 3ntm_A 4d87_A* 3nq5_A
Probab=30.97 E-value=38 Score=28.84 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=18.9
Q ss_pred eccCCCHHHHHHHHHHHHHHHH
Q psy5036 98 QWHSLTREEQAKYYEKARQERQ 119 (176)
Q Consensus 98 ~Wk~Ls~eEK~~Y~~~A~k~ke 119 (176)
.|+.||.+||+.|.+....++.
T Consensus 10 e~~~Ls~~Er~~yi~Av~~l~~ 31 (303)
T 3nm8_A 10 NVLHLTDTEKRDFVRTVLILKE 31 (303)
T ss_dssp BGGGCCHHHHHHHHHHHHHHHH
T ss_pred chHHCCHHHHHHHHHHHHHHHh
Confidence 8999999999999987666654
Done!