RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5036
(176 letters)
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG,
TCR-A, transcription factor; HET: DNA; NMR {Mus
musculus} SCOP: a.21.1.1
Length = 86
Score = 62.6 bits (153), Expect = 8e-14
Identities = 39/50 (78%), Positives = 46/50 (92%), Gaps = 3/50 (6%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKER 147
+WH+L+REEQAKYYE AR+ERQLHM+LYPGWSARDNYG KKKKRK+E+
Sbjct: 40 RWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYG---KKKKRKREK 86
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition,
chromatin, DNA binding protein, DNA sequence specific,
testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Length = 81
Score = 48.7 bits (117), Expect = 1e-08
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131
+W ++T E+ YYE+ + + H+E YP + +
Sbjct: 42 RWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYK 75
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor,
SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP:
a.21.1.1 PDB: 1j47_A
Length = 85
Score = 48.7 bits (117), Expect = 1e-08
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKER 147
QW LT E+ ++++A++ + +H E YP NY Y ++K + +
Sbjct: 42 QWKMLTEAEKWPFFQEAQKLQAMHREKYP------NYKYRPRRKAKMLPK 85
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX
domain, structural genomics, NPPSFA, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
Length = 82
Score = 47.6 bits (114), Expect = 3e-08
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG 135
W L +E+ KY + A++ + M+ PG+ + + G
Sbjct: 45 WWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGPSSG 82
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA
complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1
PDB: 1hrz_A*
Length = 76
Score = 47.2 bits (113), Expect = 5e-08
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131
QW LT E+ ++++A++ + +H E YP + R
Sbjct: 42 QWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens}
Length = 71
Score = 46.4 bits (111), Expect = 8e-08
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGW 128
W +LT E+ + E+A + R HM+ +P +
Sbjct: 40 SWKALTLAEKRPFVEEAERLRVQHMQDHPNY 70
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation,
transcription-DNA CO; HET: DNA; 2.40A {Mus musculus}
Length = 79
Score = 46.0 bits (110), Expect = 1e-07
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKR 143
+W L ++ + ++A + R HM YP +Y Y +KK +
Sbjct: 40 RWKLLKDSDKIPFIQEAERLRLKHMADYP------DYKYRPRKKVK 79
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain,
activator, DNA-binding, NUC transcription; HET: DNA;
2.77A {Homo sapiens}
Length = 106
Score = 46.6 bits (111), Expect = 1e-07
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKK 142
W L E+ + E+A + R H + +P +Y Y +++K
Sbjct: 67 LWRLLNESEKRPFVEEAERLRVQHKKDHP------DYKYQPRRRK 105
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription
factor 1, high mobility group box transcription factor
1, structural genomics; NMR {Homo sapiens}
Length = 87
Score = 44.3 bits (105), Expect = 7e-07
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYP 126
+W + EE+ Y +A+ + L P
Sbjct: 55 RWKKMKNEERRMYTLEAKALAEEQKRLNP 83
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain,
endodermal, activator, DNA- nucleus, transcription
regulation, transcrip complex; HET: DNA; 2.75A {Mus
musculus} PDB: 2yul_A
Length = 83
Score = 43.7 bits (104), Expect = 1e-06
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKR 143
W +LT E+ + E+A + R HM+ +P NY Y +++K+
Sbjct: 44 SWKALTLAEKRPFVEEAERLRVQHMQDHP------NYKYRPRRRKQ 83
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus
musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Length = 80
Score = 42.9 bits (102), Expect = 2e-06
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKR 143
+W L+ E+ + ++A++ R LHM+ +P +Y Y ++K +
Sbjct: 40 EWKLLSETEKRPFIDEAKRLRALHMKEHP------DYKYRPRRKTK 79
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX,
amphoterin, DNA/structural protein complex; NMR {Homo
sapiens} SCOP: a.21.1.1 a.21.1.1
Length = 159
Score = 36.7 bits (85), Expect = 0.001
Identities = 5/34 (14%), Positives = 18/34 (52%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131
W++ +++ Y +KA + ++ + + + A+
Sbjct: 126 MWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 159
Score = 31.0 bits (70), Expect = 0.10
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKER 147
QW LT E+ ++++A++ + +H E YP + R K +R
Sbjct: 42 QWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKGETKKKFKDPNAPKR 91
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding
protein; NMR {Homo sapiens} SCOP: a.21.1.1
Length = 99
Score = 35.1 bits (81), Expect = 0.002
Identities = 7/50 (14%), Positives = 17/50 (34%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKER 147
++ L +++ KY + ++E+Q + KK
Sbjct: 48 KYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKKLEHHHH 97
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.4 bits (78), Expect = 0.009
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 20/78 (25%)
Query: 76 PQGQTKPEARSGNEITNKNQMIQWHSLTREEQAKYYEK--ARQERQLHMELYPGWSARDN 133
+ +PE+ + +W REEQ K ++ A + +
Sbjct: 78 DRLTQEPES-----------IRKW----REEQRKRLQELDAASKVMEQEWREKAKKDLEE 122
Query: 134 Y--GYGAKKKKRKKE-RA 148
+ + +K K R
Sbjct: 123 WNQRQSEQVEKNKINNRI 140
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of
chromatin subfamily...; structural DNA-binding protein
BRAF35, DNA-bending; NMR {Mus musculus}
Length = 92
Score = 32.7 bits (75), Expect = 0.012
Identities = 8/45 (17%), Positives = 21/45 (46%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKK 142
+W L E+ +Y ++A +E+Q +++ + + Y +
Sbjct: 45 EWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYKVCTESGP 89
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Length = 101
Score = 33.0 bits (75), Expect = 0.012
Identities = 7/51 (13%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNY-GYGAKKKKRKKER 147
+W +++ ++ Y + A ++++ + W + A K+ +R
Sbjct: 44 RWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKR 94
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 32.8 bits (75), Expect = 0.013
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKK 145
W +L+ EE+ KY EKA ++ + + ++ + K
Sbjct: 45 LWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQE--SQMSLKDSGPS 90
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.023
Identities = 19/116 (16%), Positives = 31/116 (26%), Gaps = 40/116 (34%)
Query: 49 WGGMSKPSIMSWHVGSVNFICNFILIGPQGQTKPEARSGNEITNKNQMIQWHSLTREEQA 108
W + K +M VN + + L+ E K I S+ E +
Sbjct: 396 WFDVIKSDVMV----VVNKLHKYSLV--------------EKQPKESTISIPSIYLELKV 437
Query: 109 KYYEKARQERQLHMEL---------YPGWS----ARDNY-----GYGAKKKKRKKE 146
K E LH + + D Y G+ K + +
Sbjct: 438 ----KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Score = 27.9 bits (61), Expect = 2.1
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 18/102 (17%)
Query: 38 LLSDHNHSGMR---WGGMSKP-SIMSWHVGSV-----NFICNFI---LIGPQGQTKPEAR 85
++S SG W +SK ++ V V F+ + I P T+
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 86 SGNEITNKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPG 127
+ + N NQ+ ++++R + Y K RQ L +EL P
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQP---YLKLRQ--AL-LELRPA 150
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus
norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A
1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Length = 77
Score = 30.7 bits (70), Expect = 0.059
Identities = 5/34 (14%), Positives = 18/34 (52%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131
W++ +++ Y +KA + ++ + + + A+
Sbjct: 44 MWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 77
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box
domain, structural genomics, NPPSFA; NMR {Mus musculus}
Length = 102
Score = 30.1 bits (68), Expect = 0.13
Identities = 6/45 (13%), Positives = 15/45 (33%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKK 142
W L E++ Y +K ++ +++ + A
Sbjct: 55 MWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRASLVSKSYTDSGP 99
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group,
transcription, LSP1, mitochon transcription-DNA complex;
HET: DNA; 2.50A {Homo sapiens}
Length = 238
Score = 31.0 bits (69), Expect = 0.15
Identities = 7/55 (12%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 98 QWHSLTREEQAKYYEKARQERQLH---MELYPGWSARDNYGYGAKKKKRKKERAP 149
W +L+ E+ Y + A+++ + M+ + ++ +K+ +
Sbjct: 180 NWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRKYG 234
Score = 26.7 bits (58), Expect = 3.6
Identities = 8/67 (11%), Positives = 20/67 (29%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERAPIIDTNGGT 157
+W L ++ Y + R E Q++ E + + +K ++
Sbjct: 79 RWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKK 138
Query: 158 THQININ 164
+
Sbjct: 139 KELTLLG 145
>2lhj_A High mobility group protein homolog NHP1; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; NMR {Babesia bovis}
Length = 97
Score = 29.7 bits (67), Expect = 0.17
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131
W++L+ EE+ Y + ++R + ++ R
Sbjct: 62 AWNALSDEEKKPYERMSDEDRVRYEREKAEYAQR 95
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group
box domain, helix-turn-helix, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 29.0 bits (64), Expect = 0.22
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 16/68 (23%)
Query: 81 KPEARSGNEITNKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKK 140
P+ +I K MI++ L+ EE+ + KA+ E G +
Sbjct: 28 NPDFSDEADII-KEGMIRFRVLSTEERKVWANKAKGETA---------------SEGTEA 71
Query: 141 KKRKKERA 148
KKRK +
Sbjct: 72 KKRKSGPS 79
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: a.21.1.1
Length = 90
Score = 28.9 bits (65), Expect = 0.32
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHME 123
W+ L+ +++AKY + +
Sbjct: 58 MWNDLSEKKKAKYKAREAALKAQSER 83
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT
DNA, protein-drug-DNA compl regulation-DNA complex; HET:
DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB:
1j3x_A
Length = 71
Score = 28.5 bits (64), Expect = 0.32
Identities = 6/31 (19%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 98 QWHSLTREEQAKYYEKARQERQLH---MELY 125
+W +++ +E+ K+ + A+ ++ + M+ Y
Sbjct: 41 RWKTMSAKEKGKFEDMAKADKARYEREMKTY 71
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group
protein 2A, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 86
Score = 28.5 bits (64), Expect = 0.40
Identities = 7/31 (22%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 98 QWHSLTREEQAKYYEKARQERQLH---MELY 125
+W +++ +E++K+ E A+ ++ + M+ Y
Sbjct: 55 RWKTMSGKEKSKFDEMAKADKVRYDREMKDY 85
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA
recognition, chromatin, DNA binding protein; NMR
{Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A
1lwm_A
Length = 93
Score = 28.4 bits (64), Expect = 0.43
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 98 QWHSLTREEQAKYYEKARQERQLH---MELY 125
+W +LT EE+ Y KA+ +++ + ELY
Sbjct: 58 KWKALTPEEKQPYEAKAQADKKRYESEKELY 88
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus
norvegicus} SCOP: a.21.1.1
Length = 83
Score = 28.0 bits (63), Expect = 0.44
Identities = 6/31 (19%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 98 QWHSLTREEQAKYYEKARQERQLH---MELY 125
+W +++ +E+ K+ + A+ ++ + M+ Y
Sbjct: 47 RWKTMSAKEKGKFEDMAKADKARYEREMKTY 77
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription
regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo
sapiens}
Length = 214
Score = 29.3 bits (65), Expect = 0.52
Identities = 7/53 (13%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 98 QWHSLTREEQAKYYEKARQERQLH---MELYPGWSARDNYGYGAKKKKRKKER 147
W +L+ E+ Y + A+++ + M+ + ++ +K+ +
Sbjct: 148 NWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRK 200
Score = 25.9 bits (56), Expect = 6.7
Identities = 8/67 (11%), Positives = 20/67 (29%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERAPIIDTNGGT 157
+W L ++ Y + R E Q++ E + + +K ++
Sbjct: 47 RWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKK 106
Query: 158 THQININ 164
+
Sbjct: 107 KELTLLG 113
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial
transcription, activator, DNA- binding, mitochondrion,
phosphoprotein; 1.35A {Homo sapiens}
Length = 67
Score = 27.2 bits (61), Expect = 0.67
Identities = 6/31 (19%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 98 QWHSLTREEQAKYYEKARQERQLH---MELY 125
W +L+ E+ Y + A+++ + M+ +
Sbjct: 36 NWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
NMR {Mus musculus} SCOP: a.21.1.1
Length = 108
Score = 28.0 bits (62), Expect = 0.69
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNY-GYGAKKKKRKKERAP 149
QW L+++E+ Y++K Q+++ + + + K
Sbjct: 51 QWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNIS 103
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding,
helix-turn-helix motif, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 173
Score = 28.0 bits (62), Expect = 1.4
Identities = 4/26 (15%), Positives = 15/26 (57%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHME 123
W++ +++ Y +KA + ++ + +
Sbjct: 139 MWNNTAADDKQPYEKKAAKLKEKYEK 164
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 28.1 bits (62), Expect = 1.6
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 79 QTKPEARSGNEITNKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSAR--DNYGY 136
+ P A++ E++N + ++ E K +KA + YPG S + +
Sbjct: 635 KKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINF 694
Query: 137 GAKKKKRKKERAPIIDTNG 155
R +I NG
Sbjct: 695 QC----SLSSRIAVIGPNG 709
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 93
Score = 25.6 bits (55), Expect = 4.2
Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 81 KPEARS-GNEITNKNQMI-----QWHSLTREEQAKYYEKARQERQLH 121
PE R G + I W L EE+ KY E AR+ R
Sbjct: 26 IPELRRRGLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQ 72
>3uf6_A LMO1369 protein; structural genomics, the center for structural
genomics of I diseases, csgid, unknown function,
transferase; HET: COD; 1.80A {Listeria monocytogenes}
PDB: 3tng_A* 3u9e_A*
Length = 291
Score = 26.0 bits (58), Expect = 6.6
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 68 ICNFILIGPQGQTKPEARSGNEI 90
+ F+L G + A
Sbjct: 43 LGKFLLFGKKEDKTLTANESVTW 65
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein
structure initiative; HET: SO4 GOL; 1.49A {Clostridium
acetobutylicum atcc 824}
Length = 196
Score = 25.5 bits (56), Expect = 9.4
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 105 EEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERAPIIDTNGGTTHQININ 164
E + K E+ + +K ++ I + G T+ I +
Sbjct: 14 ENLLNLFPKLALEKNFIPITKTA-----SLTRASKIAFGLQDEVDAIISRGATSDYIKKS 68
Query: 165 LIYPVIFITM 174
+ P I I +
Sbjct: 69 VSIPSISIKV 78
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination,
hydrolase-recombination complex; 2.00A {Sulfolobus
solfataricus} SCOP: c.37.1.19
Length = 271
Score = 25.6 bits (57), Expect = 9.8
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 93 KNQMIQWHSLTREEQAKYYEKARQE 117
K + + +LT EQA Y+ +
Sbjct: 28 KIETNVYCNLT-PEQAAMYKAEVEN 51
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.409
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,745,691
Number of extensions: 151146
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 50
Length of query: 176
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,272,666
Effective search space: 380267274
Effective search space used: 380267274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.6 bits)