RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5036
(176 letters)
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 53.3 bits (128), Expect = 9e-11
Identities = 40/56 (71%), Positives = 48/56 (85%), Gaps = 3/56 (5%)
Query: 92 NKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKER 147
N+ +WH+L+REEQAKYYE AR+ERQLHM+LYPGWSARDNYG KKKKRK+E+
Sbjct: 34 NQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYG---KKKKRKREK 86
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 43.3 bits (102), Expect = 5e-07
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGW 128
+W ++T E+ YYE+ + + H+E YP +
Sbjct: 40 RWKAMTNLEKQPYYEEQARLSKQHLEKYPDY 70
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 42.9 bits (101), Expect = 7e-07
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 92 NKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERAP 149
+K QW LT E+ ++++A++ + +H E YP + + +RK + P
Sbjct: 36 SKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYK---------YRPRRKAKMLP 84
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster
(Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 39.1 bits (91), Expect = 2e-05
Identities = 6/40 (15%), Positives = 19/40 (47%)
Query: 92 NKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSAR 131
K W++ +++ Y +KA + ++ + + + A+
Sbjct: 34 AKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 73
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 39.5 bits (92), Expect = 2e-05
Identities = 8/68 (11%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 81 KPEARSGNEITNKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYG-YGAK 139
+ E +W +++ ++ Y + A ++++ + W + A
Sbjct: 28 ELNHLPLKERM-VEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAY 86
Query: 140 KKKRKKER 147
K+ +R
Sbjct: 87 KEYISNKR 94
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 38.4 bits (89), Expect = 5e-05
Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKKERAPIIDTNG 155
QW L+++E+ Y++K Q+++ + + ++++R +++ +G
Sbjct: 51 QWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPE----EEQQRVLGEEKMLNISG 104
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 37.6 bits (87), Expect = 8e-05
Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 92 NKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKKRKK 145
K ++ L +++ KY + ++E+Q + + + KK
Sbjct: 42 TKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRED----HPDLIQNAKK 91
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 37.5 bits (87), Expect = 8e-05
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSARDNYGYGAKKKK 142
+W L+ E+ + ++A++ R LHM+ +P + R +K K
Sbjct: 40 EWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPR-----RKTK 79
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 35.6 bits (82), Expect = 5e-04
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 92 NKNQMIQWHSLTREEQAKYYEKARQERQLHMELYPGWSA 130
K +W +LT EE+ Y KA+ +++ + ++A
Sbjct: 52 GKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNA 90
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 32.2 bits (73), Expect = 0.007
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 92 NKNQMIQWHSLTREEQAKYYEKARQERQLHME 123
+ W+ L+ +++AKY + +
Sbjct: 52 TRLLARMWNDLSEKKKAKYKAREAALKAQSER 83
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 31.0 bits (70), Expect = 0.013
Identities = 7/45 (15%), Positives = 21/45 (46%)
Query: 82 PEARSGNEITNKNQMIQWHSLTREEQAKYYEKARQERQLHMELYP 126
P+A +K +W +++ +E+ K+ + A+ ++ +
Sbjct: 25 PDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 69
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}
Length = 73
Score = 30.9 bits (70), Expect = 0.016
Identities = 4/33 (12%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 98 QWHSLTREEQAKYYEKARQERQLHMELYPGWSA 130
W ++ ++++++ KA + + + + A
Sbjct: 41 LWRAM--KDKSEWEAKAAKAKDDYDRAVKEFEA 71
>d1xr4a1 c.124.1.2 (A:1-236) Putative citrate lyase alpha chain,
citF2 {Salmonella typhimurium [TaxId: 90371]}
Length = 236
Score = 26.2 bits (58), Expect = 2.0
Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 15/70 (21%)
Query: 6 DYRFSPTSLMAAHPGLSPHSHPAIVTP-------GPKQELLSDHNHSGMRWGGMSKPSIM 58
D + +SL+ AH L H +V G E +S G M P +
Sbjct: 88 DLTLASSSLIDAHWPLIEHIKNGVVRQIYTSGLRGKLGEEISA--------GLMENPVQI 139
Query: 59 SWHVGSVNFI 68
H G V I
Sbjct: 140 HSHGGRVKLI 149
>d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD {Escherichia
coli [TaxId: 562]}
Length = 431
Score = 25.8 bits (56), Expect = 3.9
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 94 NQMIQWHSLTREEQAKYYEKARQE 117
N +I W+S T E+Q + +
Sbjct: 1 NTIIDWNSCTAEQQRQLLMRPAIS 24
>d1gx5a_ e.8.1.4 (A:) Viral RNA polymerase {Hepatitis C virus
[TaxId: 11103]}
Length = 530
Score = 25.2 bits (55), Expect = 5.2
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 99 WHSLTREEQAKYYEKARQERQLHME----LYPGWSARDNYGYGAK 139
+ + +E K + + L +E L P SA+ +GYGAK
Sbjct: 64 YRDVLKE--MKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAK 106
>d2etja1 c.55.3.1 (A:1-221) Class II ribonuclease H (RNase HII)
{Thermotoga maritima [TaxId: 2336]}
Length = 221
Score = 25.0 bits (54), Expect = 5.9
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 110 YYEKARQERQLHMELYPGWSARDNYGYGAKKKKR 143
+ R + H +YP +S + GY K+
Sbjct: 138 KVFRDRLMSEFH-RMYPQFSFHKHKGYATKEHLN 170
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.409
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 679,646
Number of extensions: 29869
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 21
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.5 bits)