Query psy5037
Match_columns 224
No_of_seqs 105 out of 116
Neff 6.3
Searched_HMMs 46136
Date Sat Aug 17 00:10:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02169 SMC_prok_A chromosom 99.0 9.5E-07 2.1E-11 90.7 30.7 58 156-213 873-930 (1164)
2 TIGR02169 SMC_prok_A chromosom 99.0 1.3E-06 2.8E-11 89.7 30.9 69 140-208 416-484 (1164)
3 PF00261 Tropomyosin: Tropomyo 99.0 1.5E-06 3.2E-11 75.8 25.8 205 16-220 13-224 (237)
4 COG1196 Smc Chromosome segrega 98.9 2.2E-06 4.7E-11 89.6 30.7 116 104-219 809-924 (1163)
5 TIGR02168 SMC_prok_B chromosom 98.9 3.2E-06 6.9E-11 86.5 31.5 36 44-79 731-766 (1179)
6 COG1196 Smc Chromosome segrega 98.9 2.5E-06 5.4E-11 89.2 30.5 120 100-219 791-910 (1163)
7 PF00261 Tropomyosin: Tropomyo 98.8 1.3E-05 2.9E-10 69.8 26.9 197 13-209 17-234 (237)
8 PF00038 Filament: Intermediat 98.8 5E-05 1.1E-09 68.0 29.9 82 13-94 49-130 (312)
9 PRK02224 chromosome segregatio 98.7 4.1E-05 9E-10 77.5 30.9 151 19-170 483-639 (880)
10 PRK02224 chromosome segregatio 98.7 5E-05 1.1E-09 77.0 30.6 74 134-207 318-391 (880)
11 PF10174 Cast: RIM-binding pro 98.5 0.00013 2.9E-09 73.4 27.4 100 27-126 324-423 (775)
12 PHA02562 46 endonuclease subun 98.5 0.0003 6.5E-09 67.6 28.6 59 41-99 215-273 (562)
13 KOG0161|consensus 98.5 0.00032 6.9E-09 76.1 31.1 206 10-215 928-1140(1930)
14 PF00038 Filament: Intermediat 98.5 0.00074 1.6E-08 60.5 28.7 86 23-108 52-137 (312)
15 TIGR00606 rad50 rad50. This fa 98.4 0.00031 6.6E-09 74.6 29.1 71 139-209 972-1044(1311)
16 PRK11637 AmiB activator; Provi 98.4 0.00045 9.8E-09 65.0 27.4 82 18-99 47-128 (428)
17 PHA02562 46 endonuclease subun 98.4 0.00029 6.4E-09 67.6 25.9 14 17-30 180-193 (562)
18 PRK11637 AmiB activator; Provi 98.4 0.0014 3E-08 61.7 29.8 88 21-108 43-130 (428)
19 TIGR00606 rad50 rad50. This fa 98.4 0.00036 7.9E-09 74.0 28.0 161 17-177 743-928 (1311)
20 PF05701 WEMBL: Weak chloropla 98.3 0.0018 3.9E-08 62.7 29.7 198 13-214 132-358 (522)
21 PF10174 Cast: RIM-binding pro 98.3 0.00063 1.4E-08 68.6 26.5 167 9-175 334-538 (775)
22 PF09726 Macoilin: Transmembra 98.3 0.001 2.2E-08 66.6 27.4 209 15-223 422-659 (697)
23 KOG0161|consensus 98.3 0.0013 2.8E-08 71.6 29.8 202 19-220 909-1124(1930)
24 PF07888 CALCOCO1: Calcium bin 98.3 0.004 8.6E-08 60.5 30.3 71 140-210 279-349 (546)
25 PF07888 CALCOCO1: Calcium bin 98.3 0.0019 4E-08 62.7 28.0 187 23-209 141-334 (546)
26 PF14662 CCDC155: Coiled-coil 98.3 0.0018 3.8E-08 55.0 26.3 156 21-176 4-162 (193)
27 COG1579 Zn-ribbon protein, pos 98.2 0.00069 1.5E-08 59.5 21.9 106 22-132 14-119 (239)
28 KOG0250|consensus 98.2 0.0035 7.6E-08 64.5 29.6 155 59-213 301-456 (1074)
29 PRK03918 chromosome segregatio 98.2 0.0038 8.1E-08 63.3 30.1 27 17-43 458-484 (880)
30 PF12718 Tropomyosin_1: Tropom 98.1 0.00089 1.9E-08 54.4 19.1 138 20-161 2-139 (143)
31 KOG0996|consensus 98.1 0.003 6.6E-08 65.4 26.8 107 26-132 385-502 (1293)
32 PF05701 WEMBL: Weak chloropla 98.1 0.01 2.2E-07 57.6 29.3 117 16-132 114-234 (522)
33 KOG0250|consensus 98.1 0.0047 1E-07 63.6 27.5 60 152-211 402-461 (1074)
34 KOG0996|consensus 98.0 0.0039 8.5E-08 64.6 25.6 192 14-208 408-599 (1293)
35 PF05667 DUF812: Protein of un 98.0 0.0099 2.1E-07 58.6 27.3 193 11-204 321-530 (594)
36 COG1579 Zn-ribbon protein, pos 98.0 0.0033 7.2E-08 55.2 21.6 160 36-210 14-173 (239)
37 PF14915 CCDC144C: CCDC144C pr 98.0 0.011 2.5E-07 53.2 27.8 176 34-209 51-258 (305)
38 KOG4674|consensus 97.9 0.013 2.9E-07 63.4 28.1 152 43-194 1216-1382(1822)
39 PRK04778 septation ring format 97.9 0.02 4.3E-07 56.0 27.3 202 16-217 254-500 (569)
40 KOG0964|consensus 97.9 0.015 3.2E-07 59.5 26.5 48 81-128 328-375 (1200)
41 KOG0933|consensus 97.9 0.026 5.6E-07 58.0 28.0 208 12-219 219-484 (1174)
42 COG1340 Uncharacterized archae 97.9 0.018 4E-07 51.9 29.6 177 22-198 31-240 (294)
43 KOG0977|consensus 97.8 0.02 4.4E-07 55.6 25.1 150 30-179 33-190 (546)
44 PRK01156 chromosome segregatio 97.8 0.058 1.3E-06 55.1 30.9 17 19-35 477-493 (895)
45 KOG0933|consensus 97.8 0.035 7.6E-07 57.1 27.0 167 45-211 733-903 (1174)
46 PF15619 Lebercilin: Ciliary p 97.7 0.017 3.6E-07 49.3 20.9 169 19-204 13-189 (194)
47 PF12718 Tropomyosin_1: Tropom 97.7 0.011 2.4E-07 47.9 19.0 118 68-185 8-128 (143)
48 PRK01156 chromosome segregatio 97.7 0.073 1.6E-06 54.4 30.2 26 188-213 418-443 (895)
49 KOG0964|consensus 97.7 0.066 1.4E-06 55.0 27.8 163 51-213 326-501 (1200)
50 PRK04863 mukB cell division pr 97.7 0.066 1.4E-06 57.9 28.9 47 21-67 289-335 (1486)
51 PRK09039 hypothetical protein; 97.7 0.018 3.9E-07 53.1 21.7 45 133-177 140-184 (343)
52 KOG0977|consensus 97.7 0.024 5.2E-07 55.1 23.1 36 16-51 90-125 (546)
53 PRK09039 hypothetical protein; 97.6 0.03 6.5E-07 51.6 22.1 20 17-36 45-64 (343)
54 KOG0976|consensus 97.6 0.1 2.3E-06 52.8 27.7 118 15-132 82-199 (1265)
55 COG1340 Uncharacterized archae 97.6 0.055 1.2E-06 48.9 26.9 84 22-105 17-100 (294)
56 KOG4674|consensus 97.6 0.11 2.4E-06 56.6 28.3 112 94-205 142-257 (1822)
57 PF10473 CENP-F_leu_zip: Leuci 97.5 0.022 4.8E-07 46.2 17.9 98 27-124 12-109 (140)
58 PRK04863 mukB cell division pr 97.5 0.13 2.8E-06 55.7 28.1 13 35-47 317-329 (1486)
59 PRK04778 septation ring format 97.5 0.12 2.7E-06 50.5 25.9 200 14-213 278-503 (569)
60 PF15619 Lebercilin: Ciliary p 97.5 0.056 1.2E-06 46.1 24.8 171 39-212 12-190 (194)
61 PF09730 BicD: Microtubule-ass 97.5 0.032 7E-07 56.0 21.4 190 17-215 264-455 (717)
62 KOG0980|consensus 97.4 0.16 3.5E-06 51.7 25.7 146 21-166 389-537 (980)
63 KOG0971|consensus 97.4 0.2 4.3E-06 51.4 28.2 106 100-205 401-530 (1243)
64 PF01576 Myosin_tail_1: Myosin 97.4 3.5E-05 7.7E-10 78.5 0.0 205 8-212 402-649 (859)
65 PF10473 CENP-F_leu_zip: Leuci 97.4 0.052 1.1E-06 44.1 19.5 93 36-128 7-99 (140)
66 PF14662 CCDC155: Coiled-coil 97.3 0.087 1.9E-06 44.8 24.8 123 55-177 62-191 (193)
67 PF01576 Myosin_tail_1: Myosin 97.3 6.1E-05 1.3E-09 76.8 0.0 201 15-215 99-307 (859)
68 PF05911 DUF869: Plant protein 97.3 0.13 2.8E-06 52.2 23.3 165 14-180 20-205 (769)
69 PF08614 ATG16: Autophagy prot 97.2 0.0059 1.3E-07 51.7 11.7 111 18-128 67-177 (194)
70 KOG0018|consensus 97.2 0.33 7.1E-06 50.5 25.4 115 100-216 364-481 (1141)
71 PF12128 DUF3584: Protein of u 97.1 0.5 1.1E-05 50.3 28.6 63 159-221 470-532 (1201)
72 KOG0971|consensus 97.1 0.22 4.7E-06 51.1 22.4 144 43-187 386-554 (1243)
73 PF00769 ERM: Ezrin/radixin/mo 97.1 0.062 1.3E-06 47.3 16.8 126 63-188 1-126 (246)
74 TIGR02680 conserved hypothetic 97.1 0.63 1.4E-05 50.2 28.5 86 14-99 745-832 (1353)
75 KOG0612|consensus 97.1 0.56 1.2E-05 49.5 27.8 173 37-209 492-683 (1317)
76 PF05622 HOOK: HOOK protein; 97.0 0.00014 3.1E-09 72.6 0.0 196 23-218 198-423 (713)
77 KOG0946|consensus 97.0 0.44 9.4E-06 48.4 23.9 208 14-221 646-883 (970)
78 PF09730 BicD: Microtubule-ass 97.0 0.35 7.7E-06 48.7 23.2 127 22-159 31-157 (717)
79 COG4942 Membrane-bound metallo 97.0 0.35 7.6E-06 45.8 27.0 49 151-199 196-244 (420)
80 PF15070 GOLGA2L5: Putative go 97.0 0.48 1E-05 47.1 29.5 110 15-124 26-151 (617)
81 KOG0018|consensus 96.9 0.66 1.4E-05 48.3 25.4 36 183-218 853-888 (1141)
82 PF15070 GOLGA2L5: Putative go 96.9 0.53 1.1E-05 46.8 26.9 133 31-163 86-221 (617)
83 PF05911 DUF869: Plant protein 96.9 0.2 4.3E-06 50.9 20.6 167 41-214 591-761 (769)
84 KOG1003|consensus 96.9 0.24 5.2E-06 42.3 26.2 174 30-203 9-196 (205)
85 PF08317 Spc7: Spc7 kinetochor 96.9 0.35 7.6E-06 44.1 23.8 60 137-196 209-268 (325)
86 COG3883 Uncharacterized protei 96.8 0.32 7E-06 43.4 24.8 60 133-192 158-217 (265)
87 PF12128 DUF3584: Protein of u 96.8 0.89 1.9E-05 48.4 29.6 28 160-187 773-800 (1201)
88 PF13851 GAS: Growth-arrest sp 96.6 0.37 8.1E-06 41.2 22.6 139 17-165 33-171 (201)
89 KOG4643|consensus 96.6 1.1 2.4E-05 46.6 28.1 116 16-131 175-309 (1195)
90 PF06160 EzrA: Septation ring 96.6 0.81 1.8E-05 44.8 23.6 110 100-209 318-430 (560)
91 PF04849 HAP1_N: HAP1 N-termin 96.6 0.58 1.3E-05 42.6 21.9 194 16-212 60-288 (306)
92 COG4942 Membrane-bound metallo 96.5 0.74 1.6E-05 43.6 24.0 66 26-91 39-104 (420)
93 PF09726 Macoilin: Transmembra 96.5 1.1 2.3E-05 45.3 26.9 94 20-113 420-513 (697)
94 PF04849 HAP1_N: HAP1 N-termin 96.5 0.63 1.4E-05 42.4 25.8 179 41-222 71-277 (306)
95 PF08614 ATG16: Autophagy prot 96.4 0.06 1.3E-06 45.5 11.4 114 77-190 70-183 (194)
96 PF04012 PspA_IM30: PspA/IM30 96.4 0.52 1.1E-05 40.2 18.6 116 73-191 29-145 (221)
97 TIGR01843 type_I_hlyD type I s 96.3 0.83 1.8E-05 41.9 22.9 48 69-116 132-179 (423)
98 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.3 0.41 8.8E-06 38.1 18.3 73 137-212 59-131 (132)
99 KOG0978|consensus 96.3 1.4 3.1E-05 44.3 29.4 15 15-29 397-411 (698)
100 PF06818 Fez1: Fez1; InterPro 96.1 0.75 1.6E-05 39.5 16.7 95 40-134 11-105 (202)
101 KOG0995|consensus 96.0 1.7 3.7E-05 42.6 29.3 59 30-88 264-322 (581)
102 PF13870 DUF4201: Domain of un 96.0 0.72 1.6E-05 38.2 22.5 112 17-128 5-124 (177)
103 TIGR01843 type_I_hlyD type I s 96.0 1.2 2.7E-05 40.7 23.8 24 186-209 246-269 (423)
104 KOG1029|consensus 95.9 2.3 5.1E-05 43.3 24.4 34 136-169 548-581 (1118)
105 COG1842 PspA Phage shock prote 95.9 1.1 2.4E-05 39.1 19.9 117 14-132 27-143 (225)
106 PF09789 DUF2353: Uncharacteri 95.9 1.4 3.1E-05 40.4 21.8 155 42-196 68-227 (319)
107 PF13851 GAS: Growth-arrest sp 95.8 1 2.2E-05 38.5 20.6 98 20-128 29-126 (201)
108 KOG0978|consensus 95.8 2.5 5.3E-05 42.6 27.8 185 14-202 411-617 (698)
109 TIGR01000 bacteriocin_acc bact 95.8 1.8 4E-05 41.0 23.4 72 138-209 237-314 (457)
110 KOG0994|consensus 95.8 3.3 7.2E-05 44.0 24.7 160 51-210 1509-1678(1758)
111 KOG0963|consensus 95.7 2.4 5.2E-05 42.0 23.7 168 44-211 112-342 (629)
112 KOG0612|consensus 95.7 3.5 7.6E-05 43.8 27.5 127 25-151 501-665 (1317)
113 PF05667 DUF812: Protein of un 95.6 2.6 5.7E-05 41.8 26.2 181 36-216 325-528 (594)
114 TIGR02680 conserved hypothetic 95.6 4.2 9.1E-05 44.0 28.8 79 12-90 750-830 (1353)
115 KOG0995|consensus 95.6 2.7 5.8E-05 41.3 25.9 74 136-212 431-504 (581)
116 KOG0963|consensus 95.5 2.8 6.1E-05 41.5 25.2 58 135-193 301-358 (629)
117 TIGR03007 pepcterm_ChnLen poly 95.5 2.4 5.1E-05 40.4 24.2 41 85-125 251-291 (498)
118 KOG0976|consensus 95.5 3.5 7.6E-05 42.3 28.7 83 17-99 98-180 (1265)
119 PF12325 TMF_TATA_bd: TATA ele 95.5 0.7 1.5E-05 36.5 12.9 38 113-150 20-57 (120)
120 PF12325 TMF_TATA_bd: TATA ele 95.4 0.74 1.6E-05 36.4 12.9 18 83-100 18-35 (120)
121 PF05557 MAD: Mitotic checkpoi 95.4 0.004 8.6E-08 62.4 0.0 16 17-32 191-206 (722)
122 COG0419 SbcC ATPase involved i 95.4 3.8 8.3E-05 42.3 29.9 119 93-211 313-442 (908)
123 COG5185 HEC1 Protein involved 95.4 2.8 6.1E-05 40.5 23.8 89 17-109 270-358 (622)
124 TIGR02338 gimC_beta prefoldin, 95.3 0.45 9.8E-06 36.6 11.2 79 99-177 7-107 (110)
125 TIGR02977 phageshock_pspA phag 95.3 1.7 3.6E-05 37.5 18.5 109 82-192 39-147 (219)
126 PF04582 Reo_sigmaC: Reovirus 95.3 0.023 5E-07 52.0 4.5 128 18-145 28-155 (326)
127 KOG0980|consensus 95.3 4.3 9.3E-05 41.8 28.0 54 135-188 464-517 (980)
128 PF10146 zf-C4H2: Zinc finger- 95.2 1 2.2E-05 39.4 14.4 95 93-187 9-103 (230)
129 PF14197 Cep57_CLD_2: Centroso 95.2 0.38 8.2E-06 34.4 9.6 64 16-79 3-66 (69)
130 KOG0243|consensus 95.1 5.3 0.00012 41.9 20.9 99 100-198 474-572 (1041)
131 PF05557 MAD: Mitotic checkpoi 95.1 0.023 4.9E-07 57.1 4.0 88 23-110 341-428 (722)
132 PF09304 Cortex-I_coil: Cortex 95.0 1.3 2.8E-05 34.4 14.0 99 34-132 4-102 (107)
133 PF04156 IncA: IncA protein; 95.0 1.8 3.8E-05 36.0 16.2 68 19-86 82-149 (191)
134 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.9 1.5 3.3E-05 34.8 16.6 42 18-59 3-44 (132)
135 PF08317 Spc7: Spc7 kinetochor 94.9 3 6.4E-05 38.0 28.2 157 40-206 129-289 (325)
136 PF05483 SCP-1: Synaptonemal c 94.8 5.2 0.00011 40.3 29.0 78 17-94 449-526 (786)
137 PF11559 ADIP: Afadin- and alp 94.7 1.8 3.9E-05 34.9 16.1 81 98-178 41-121 (151)
138 COG4026 Uncharacterized protei 94.7 0.4 8.7E-06 42.0 10.3 77 48-124 130-206 (290)
139 COG3883 Uncharacterized protei 94.7 3 6.5E-05 37.3 25.6 52 155-206 166-217 (265)
140 PF04111 APG6: Autophagy prote 94.6 0.81 1.8E-05 41.7 12.5 8 125-132 101-108 (314)
141 PF13514 AAA_27: AAA domain 94.6 7.4 0.00016 41.2 28.7 32 68-99 802-833 (1111)
142 PF06160 EzrA: Septation ring 94.6 5.1 0.00011 39.3 26.6 56 31-86 277-332 (560)
143 PRK10246 exonuclease subunit S 94.5 7.5 0.00016 41.0 26.9 25 139-163 779-803 (1047)
144 KOG0994|consensus 94.5 8 0.00017 41.3 24.8 53 136-188 1695-1747(1758)
145 PRK11281 hypothetical protein; 94.5 7.9 0.00017 41.2 25.9 43 57-99 125-167 (1113)
146 PF10498 IFT57: Intra-flagella 94.5 2.3 5E-05 39.6 15.4 132 42-177 216-347 (359)
147 KOG0962|consensus 94.5 8.4 0.00018 41.4 25.6 177 27-207 187-374 (1294)
148 COG1842 PspA Phage shock prote 94.5 3.1 6.6E-05 36.3 18.9 93 98-192 55-147 (225)
149 PF10186 Atg14: UV radiation r 94.5 3.1 6.8E-05 36.4 16.9 87 41-127 58-144 (302)
150 smart00787 Spc7 Spc7 kinetocho 94.4 3.9 8.4E-05 37.4 22.8 38 55-92 139-176 (312)
151 TIGR01005 eps_transp_fam exopo 94.4 6.2 0.00014 39.7 22.0 43 135-177 321-364 (754)
152 PF14197 Cep57_CLD_2: Centroso 94.4 0.91 2E-05 32.4 9.9 64 149-212 3-66 (69)
153 TIGR01005 eps_transp_fam exopo 94.4 6.4 0.00014 39.7 22.9 116 83-208 290-405 (754)
154 PRK11281 hypothetical protein; 94.3 8.6 0.00019 41.0 22.6 10 23-32 41-50 (1113)
155 PF10146 zf-C4H2: Zinc finger- 94.3 2.7 5.9E-05 36.8 14.6 74 58-131 30-103 (230)
156 PF04582 Reo_sigmaC: Reovirus 94.3 0.09 2E-06 48.2 5.6 116 81-196 28-150 (326)
157 PF04111 APG6: Autophagy prote 94.3 1.6 3.5E-05 39.7 13.8 87 30-116 48-134 (314)
158 COG4372 Uncharacterized protei 94.2 5.2 0.00011 37.8 27.4 155 42-196 133-290 (499)
159 COG4372 Uncharacterized protei 94.1 5.4 0.00012 37.7 28.9 68 19-86 75-142 (499)
160 KOG0962|consensus 94.0 10 0.00023 40.7 26.2 69 140-210 1011-1079(1294)
161 PF09789 DUF2353: Uncharacteri 94.0 5 0.00011 36.9 22.0 41 158-198 133-173 (319)
162 cd00632 Prefoldin_beta Prefold 93.9 1.4 3E-05 33.5 10.8 43 136-178 62-104 (105)
163 PF10481 CENP-F_N: Cenp-F N-te 93.9 4.7 0.0001 36.3 16.6 107 39-145 18-124 (307)
164 PF05622 HOOK: HOOK protein; 93.8 0.017 3.7E-07 57.9 0.0 54 142-195 361-421 (713)
165 KOG0979|consensus 93.8 9.9 0.00022 39.8 22.8 63 137-199 290-352 (1072)
166 smart00787 Spc7 Spc7 kinetocho 93.8 5.2 0.00011 36.5 17.9 54 142-195 209-262 (312)
167 PF06005 DUF904: Protein of un 93.7 1.9 4E-05 31.1 10.8 65 139-203 6-70 (72)
168 PF06005 DUF904: Protein of un 93.6 1.9 4.2E-05 31.0 11.1 65 26-90 5-69 (72)
169 KOG0243|consensus 93.6 9.4 0.0002 40.2 19.1 147 14-163 407-579 (1041)
170 PF00769 ERM: Ezrin/radixin/mo 93.6 4.8 0.0001 35.4 16.2 109 30-138 10-118 (246)
171 PRK15422 septal ring assembly 93.4 1.8 3.9E-05 31.8 9.9 39 27-65 6-44 (79)
172 PF05384 DegS: Sensor protein 93.4 3.9 8.5E-05 33.9 21.0 146 39-184 6-152 (159)
173 PF10186 Atg14: UV radiation r 93.4 5.1 0.00011 35.0 18.8 76 105-180 59-134 (302)
174 COG2433 Uncharacterized conser 93.3 2 4.4E-05 42.5 13.1 92 76-178 417-508 (652)
175 PRK09343 prefoldin subunit bet 93.1 2.8 6E-05 32.9 11.6 45 135-179 69-113 (121)
176 KOG0946|consensus 93.1 12 0.00026 38.5 22.2 40 133-172 802-841 (970)
177 COG0419 SbcC ATPase involved i 93.0 13 0.00028 38.5 30.2 114 100-213 313-430 (908)
178 COG2433 Uncharacterized conser 93.0 2 4.4E-05 42.5 12.5 48 63-110 418-465 (652)
179 PF05483 SCP-1: Synaptonemal c 92.9 12 0.00025 37.9 28.4 183 18-207 471-682 (786)
180 PRK10698 phage shock protein P 92.9 5.8 0.00012 34.4 21.6 105 87-193 44-148 (222)
181 TIGR01000 bacteriocin_acc bact 92.7 9.2 0.0002 36.3 21.9 25 190-214 288-312 (457)
182 KOG1029|consensus 92.7 13 0.00029 38.1 25.4 120 57-177 390-519 (1118)
183 PF12795 MscS_porin: Mechanose 92.6 6.5 0.00014 34.1 23.2 167 19-185 32-212 (240)
184 PF13870 DUF4201: Domain of un 92.5 5.2 0.00011 33.0 20.7 31 184-214 143-173 (177)
185 PF06008 Laminin_I: Laminin Do 92.3 7.5 0.00016 34.2 28.2 64 17-80 51-114 (264)
186 PF08581 Tup_N: Tup N-terminal 92.1 3.6 7.9E-05 30.2 11.6 75 43-120 1-75 (79)
187 PF10498 IFT57: Intra-flagella 92.1 10 0.00022 35.3 16.7 128 19-154 221-352 (359)
188 TIGR03017 EpsF chain length de 91.9 11 0.00024 35.3 21.7 24 183-206 346-369 (444)
189 COG4026 Uncharacterized protei 91.9 3 6.5E-05 36.6 11.0 81 44-124 133-213 (290)
190 COG1382 GimC Prefoldin, chaper 91.8 5.5 0.00012 31.5 11.5 88 96-184 7-110 (119)
191 PF09738 DUF2051: Double stran 91.6 5.8 0.00012 36.2 13.2 86 103-188 78-163 (302)
192 TIGR03185 DNA_S_dndD DNA sulfu 91.6 16 0.00034 36.4 29.9 14 150-163 397-410 (650)
193 KOG0979|consensus 91.5 21 0.00045 37.6 23.3 90 100-189 267-356 (1072)
194 TIGR03007 pepcterm_ChnLen poly 91.4 13 0.00029 35.3 24.2 12 135-146 280-291 (498)
195 PF01920 Prefoldin_2: Prefoldi 91.4 4.1 9E-05 30.2 10.3 42 135-176 60-101 (106)
196 TIGR00634 recN DNA repair prot 91.2 16 0.00034 35.8 22.9 41 13-53 163-203 (563)
197 PF09755 DUF2046: Uncharacteri 91.2 12 0.00026 34.3 25.4 173 28-213 23-198 (310)
198 PF07111 HCR: Alpha helical co 91.2 19 0.0004 36.5 26.4 181 36-216 166-410 (739)
199 PF07889 DUF1664: Protein of u 91.1 6.7 0.00014 31.3 11.5 75 20-94 45-123 (126)
200 PF13166 AAA_13: AAA domain 91.1 18 0.00038 36.0 26.4 143 68-212 323-471 (712)
201 PF06008 Laminin_I: Laminin Do 90.9 11 0.00023 33.2 27.8 83 15-97 28-110 (264)
202 COG4477 EzrA Negative regulato 90.9 17 0.00038 35.6 25.9 83 136-218 353-435 (570)
203 PF11932 DUF3450: Protein of u 90.7 11 0.00023 33.0 13.8 60 69-128 23-82 (251)
204 KOG4360|consensus 90.6 13 0.00029 36.3 14.9 85 30-114 217-301 (596)
205 PF05266 DUF724: Protein of un 90.6 9.8 0.00021 32.3 13.3 22 30-51 101-122 (190)
206 PRK10884 SH3 domain-containing 90.5 5.6 0.00012 34.3 11.4 24 93-116 137-160 (206)
207 KOG1937|consensus 90.5 17 0.00037 35.0 21.3 160 39-202 345-518 (521)
208 KOG1003|consensus 90.5 11 0.00023 32.5 24.8 55 135-189 142-196 (205)
209 KOG4673|consensus 90.3 23 0.00049 36.1 23.4 72 142-213 521-593 (961)
210 PF06818 Fez1: Fez1; InterPro 90.3 11 0.00024 32.5 21.1 184 17-208 9-199 (202)
211 PF02994 Transposase_22: L1 tr 90.3 0.83 1.8E-05 42.6 6.6 94 39-132 98-195 (370)
212 TIGR02977 phageshock_pspA phag 90.2 11 0.00024 32.3 18.8 101 39-139 38-143 (219)
213 PF13747 DUF4164: Domain of un 90.2 6.3 0.00014 29.4 11.4 51 168-218 35-85 (89)
214 PRK03947 prefoldin subunit alp 89.9 8.5 0.00018 30.5 11.8 47 134-180 91-137 (140)
215 PRK10884 SH3 domain-containing 89.8 11 0.00024 32.4 12.7 12 18-29 100-111 (206)
216 PF09787 Golgin_A5: Golgin sub 89.5 21 0.00046 34.6 20.4 59 78-136 177-241 (511)
217 KOG4643|consensus 89.4 31 0.00068 36.4 27.6 147 47-193 402-558 (1195)
218 KOG1853|consensus 89.4 16 0.00034 32.9 15.6 79 107-202 50-128 (333)
219 PF03962 Mnd1: Mnd1 family; I 89.1 13 0.00027 31.5 12.5 105 19-127 63-167 (188)
220 PRK10246 exonuclease subunit S 88.9 34 0.00075 36.2 27.0 28 184-211 827-854 (1047)
221 PF09787 Golgin_A5: Golgin sub 88.7 24 0.00053 34.2 22.1 74 137-210 355-430 (511)
222 PF02403 Seryl_tRNA_N: Seryl-t 88.6 4.4 9.6E-05 30.6 8.5 64 36-99 33-99 (108)
223 KOG4673|consensus 88.5 31 0.00067 35.1 27.0 132 69-204 490-637 (961)
224 PRK10698 phage shock protein P 88.4 16 0.00034 31.7 22.3 45 14-58 27-71 (222)
225 PF12777 MT: Microtubule-bindi 88.0 4.5 9.7E-05 37.1 9.7 92 23-128 219-310 (344)
226 PF10481 CENP-F_N: Cenp-F N-te 87.9 20 0.00044 32.4 14.7 109 60-189 18-133 (307)
227 KOG4360|consensus 87.8 29 0.00063 34.0 15.5 99 31-129 204-302 (596)
228 PF02183 HALZ: Homeobox associ 87.6 2.5 5.5E-05 27.7 5.6 41 15-55 2-42 (45)
229 PF05266 DUF724: Protein of un 87.5 17 0.00036 30.9 12.9 79 133-211 106-184 (190)
230 PF11559 ADIP: Afadin- and alp 87.4 13 0.00029 29.7 15.4 66 23-88 43-108 (151)
231 PF10212 TTKRSYEDQ: Predicted 87.0 19 0.00041 35.2 13.4 91 31-121 419-513 (518)
232 PF07111 HCR: Alpha helical co 86.9 38 0.00082 34.4 24.3 111 106-216 166-279 (739)
233 PF10168 Nup88: Nuclear pore c 86.7 33 0.00071 35.0 15.6 7 20-26 545-551 (717)
234 PF10805 DUF2730: Protein of u 86.3 7.6 0.00016 29.8 8.6 62 151-212 35-98 (106)
235 PF04012 PspA_IM30: PspA/IM30 86.2 20 0.00043 30.5 22.9 112 14-128 26-138 (221)
236 KOG1899|consensus 86.2 40 0.00087 34.0 18.7 107 23-129 109-215 (861)
237 PF09738 DUF2051: Double stran 86.1 26 0.00057 31.9 13.3 92 125-216 79-170 (302)
238 KOG1962|consensus 86.1 17 0.00037 31.6 11.5 74 35-112 130-203 (216)
239 PRK10929 putative mechanosensi 86.0 53 0.0012 35.2 26.6 71 20-90 60-139 (1109)
240 PF15290 Syntaphilin: Golgi-lo 85.9 15 0.00033 33.2 11.4 76 139-214 70-145 (305)
241 PF02403 Seryl_tRNA_N: Seryl-t 85.9 12 0.00025 28.2 9.5 26 20-45 38-63 (108)
242 PF12329 TMF_DNA_bd: TATA elem 85.9 11 0.00023 27.1 8.8 57 147-203 8-64 (74)
243 PF12329 TMF_DNA_bd: TATA elem 85.9 11 0.00023 27.1 10.3 39 154-192 29-67 (74)
244 KOG0249|consensus 85.8 45 0.00097 34.2 16.9 70 19-88 50-126 (916)
245 KOG4302|consensus 85.7 43 0.00093 33.8 18.4 139 25-163 54-193 (660)
246 PF11932 DUF3450: Protein of u 85.7 23 0.00051 30.8 15.3 63 37-99 40-102 (251)
247 PF10212 TTKRSYEDQ: Predicted 85.5 38 0.00083 33.2 20.4 37 149-185 478-514 (518)
248 PF15294 Leu_zip: Leucine zipp 85.2 19 0.00041 32.5 11.7 108 100-207 130-243 (278)
249 COG1730 GIM5 Predicted prefold 84.7 20 0.00044 29.2 11.8 48 133-180 90-137 (145)
250 KOG4809|consensus 84.6 44 0.00096 33.1 21.3 108 100-207 329-449 (654)
251 TIGR03017 EpsF chain length de 84.5 35 0.00076 31.8 21.9 82 133-218 285-367 (444)
252 PF09728 Taxilin: Myosin-like 84.3 32 0.0007 31.3 29.6 105 117-221 203-307 (309)
253 PRK15422 septal ring assembly 83.9 15 0.00032 27.0 10.5 63 140-202 7-69 (79)
254 PRK00736 hypothetical protein; 83.9 10 0.00023 26.8 7.8 46 135-180 3-48 (68)
255 PRK02793 phi X174 lysis protei 83.9 12 0.00025 26.8 8.1 46 135-180 6-51 (72)
256 PRK00295 hypothetical protein; 83.8 11 0.00023 26.7 7.8 45 135-179 3-47 (68)
257 KOG1853|consensus 83.6 33 0.00071 30.8 15.8 31 93-123 96-126 (333)
258 KOG0999|consensus 83.6 50 0.0011 32.9 26.8 22 13-34 10-31 (772)
259 PF05010 TACC: Transforming ac 83.5 28 0.00061 30.0 26.3 138 61-201 56-204 (207)
260 PF10805 DUF2730: Protein of u 83.5 17 0.00036 27.9 9.3 42 59-100 48-91 (106)
261 PF10168 Nup88: Nuclear pore c 83.4 56 0.0012 33.3 20.4 22 134-155 643-664 (717)
262 PF09755 DUF2046: Uncharacteri 82.9 38 0.00082 31.1 28.0 159 17-181 33-201 (310)
263 TIGR02231 conserved hypothetic 82.8 17 0.00036 35.2 11.2 101 16-116 69-173 (525)
264 PF05377 FlaC_arch: Flagella a 82.7 5.6 0.00012 27.3 5.6 36 139-174 2-37 (55)
265 PRK02119 hypothetical protein; 82.5 14 0.00031 26.5 8.1 45 135-179 7-51 (73)
266 KOG2991|consensus 82.1 38 0.00083 30.5 20.6 175 30-207 106-306 (330)
267 KOG0247|consensus 81.9 47 0.001 34.0 14.0 111 112-223 537-649 (809)
268 COG3074 Uncharacterized protei 81.7 17 0.00037 26.2 10.2 45 29-73 8-52 (79)
269 PF04102 SlyX: SlyX; InterPro 81.5 11 0.00025 26.5 7.2 46 136-181 3-48 (69)
270 PF09304 Cortex-I_coil: Cortex 81.3 23 0.0005 27.5 13.9 55 100-154 21-75 (107)
271 PF04859 DUF641: Plant protein 81.2 15 0.00033 29.5 8.6 83 36-118 49-131 (131)
272 KOG2991|consensus 81.1 42 0.0009 30.3 21.7 139 19-158 116-278 (330)
273 PF08826 DMPK_coil: DMPK coile 81.0 16 0.00035 25.5 8.8 44 43-86 15-58 (61)
274 PF02994 Transposase_22: L1 tr 80.9 6.3 0.00014 36.7 7.3 28 100-127 142-169 (370)
275 PF10234 Cluap1: Clusterin-ass 80.8 24 0.00052 31.7 10.6 73 42-114 165-237 (267)
276 PF07106 TBPIP: Tat binding pr 80.5 30 0.00065 28.3 12.4 60 17-81 78-137 (169)
277 cd00632 Prefoldin_beta Prefold 80.4 23 0.00049 26.8 11.7 33 40-72 7-39 (105)
278 PRK01203 prefoldin subunit alp 80.3 29 0.00062 27.9 10.1 39 133-171 83-121 (130)
279 PRK04406 hypothetical protein; 80.2 18 0.0004 26.1 8.0 42 136-177 10-51 (75)
280 PF13514 AAA_27: AAA domain 79.6 90 0.0019 33.2 29.7 27 60-86 743-769 (1111)
281 PF12761 End3: Actin cytoskele 79.3 14 0.00031 31.6 8.3 96 16-114 94-193 (195)
282 PF05010 TACC: Transforming ac 79.1 41 0.00089 29.0 26.6 166 39-214 23-189 (207)
283 PRK00846 hypothetical protein; 78.8 22 0.00047 26.0 8.0 49 134-182 10-58 (77)
284 TIGR03752 conj_TIGR03752 integ 78.8 40 0.00087 32.7 12.0 41 23-63 64-104 (472)
285 TIGR02231 conserved hypothetic 78.7 27 0.00059 33.7 11.2 40 149-188 129-168 (525)
286 KOG0982|consensus 78.7 65 0.0014 31.0 19.2 30 92-121 247-276 (502)
287 PF15397 DUF4618: Domain of un 78.4 50 0.0011 29.5 20.0 143 13-179 76-228 (258)
288 PRK04325 hypothetical protein; 78.4 22 0.00048 25.5 8.0 41 137-177 9-49 (74)
289 KOG4603|consensus 78.3 21 0.00045 30.2 8.7 70 89-163 80-149 (201)
290 KOG1899|consensus 78.1 82 0.0018 31.9 14.7 45 112-156 170-214 (861)
291 COG3074 Uncharacterized protei 78.0 23 0.00051 25.5 10.3 54 50-103 8-61 (79)
292 PF12795 MscS_porin: Mechanose 77.9 45 0.00098 28.8 22.4 92 36-127 35-138 (240)
293 PF13863 DUF4200: Domain of un 77.6 30 0.00065 26.5 14.1 47 133-179 63-109 (126)
294 TIGR02338 gimC_beta prefoldin, 77.4 29 0.00064 26.4 11.7 21 43-63 14-34 (110)
295 PF05529 Bap31: B-cell recepto 77.1 31 0.00068 28.7 9.8 74 32-111 118-191 (192)
296 PF15066 CAGE1: Cancer-associa 77.1 75 0.0016 30.9 24.8 178 30-214 315-499 (527)
297 TIGR00634 recN DNA repair prot 76.6 79 0.0017 30.9 22.0 40 138-177 302-341 (563)
298 PF00170 bZIP_1: bZIP transcri 76.3 22 0.00047 24.3 8.1 41 36-76 23-63 (64)
299 PF09728 Taxilin: Myosin-like 76.0 62 0.0014 29.4 29.2 108 96-206 136-250 (309)
300 PF08647 BRE1: BRE1 E3 ubiquit 75.7 31 0.00068 25.8 10.7 76 144-219 3-78 (96)
301 PF05377 FlaC_arch: Flagella a 75.2 15 0.00033 25.1 6.0 14 93-106 33-46 (55)
302 PRK04406 hypothetical protein; 75.0 25 0.00054 25.4 7.5 38 137-174 18-55 (75)
303 PF04728 LPP: Lipoprotein leuc 74.9 24 0.00053 24.2 7.8 43 28-70 6-48 (56)
304 KOG1962|consensus 74.9 35 0.00076 29.7 9.6 49 37-85 149-197 (216)
305 PF13094 CENP-Q: CENP-Q, a CEN 74.8 42 0.00091 27.2 9.7 79 1-79 7-88 (160)
306 KOG0240|consensus 74.7 95 0.0021 30.9 16.8 74 9-82 412-485 (607)
307 TIGR02449 conserved hypothetic 74.6 27 0.0006 24.7 8.8 59 20-78 2-60 (65)
308 PF13166 AAA_13: AAA domain 74.1 97 0.0021 30.8 25.3 25 55-79 324-348 (712)
309 PF15456 Uds1: Up-regulated Du 73.8 43 0.00093 26.5 11.4 86 67-153 22-118 (124)
310 PF09744 Jnk-SapK_ap_N: JNK_SA 73.8 50 0.0011 27.3 11.2 21 95-115 89-109 (158)
311 PF03962 Mnd1: Mnd1 family; I 73.3 55 0.0012 27.6 12.9 25 95-119 103-127 (188)
312 PRK02119 hypothetical protein; 73.3 31 0.00068 24.7 7.7 41 136-176 15-55 (73)
313 PF00170 bZIP_1: bZIP transcri 73.0 24 0.00053 24.1 6.8 24 63-86 29-52 (64)
314 PF14389 Lzipper-MIP1: Leucine 72.5 19 0.00041 26.7 6.5 72 31-102 7-82 (88)
315 TIGR00293 prefoldin, archaeal 72.0 43 0.00093 25.8 10.1 42 134-175 83-124 (126)
316 PF10046 BLOC1_2: Biogenesis o 71.7 40 0.00088 25.3 11.6 49 80-128 13-61 (99)
317 COG4717 Uncharacterized conser 71.5 1.4E+02 0.003 31.4 26.3 127 85-211 701-850 (984)
318 TIGR02894 DNA_bind_RsfA transc 71.1 60 0.0013 27.0 10.6 55 34-88 99-153 (161)
319 PRK04325 hypothetical protein; 70.9 36 0.00078 24.4 7.7 45 133-177 12-56 (74)
320 PF15254 CCDC14: Coiled-coil d 70.7 58 0.0013 33.5 11.2 85 6-90 471-559 (861)
321 smart00502 BBC B-Box C-termina 70.5 41 0.0009 25.0 12.7 63 45-107 6-69 (127)
322 PF09486 HrpB7: Bacterial type 70.2 61 0.0013 26.8 17.9 123 39-168 15-138 (158)
323 COG2900 SlyX Uncharacterized p 69.8 39 0.00085 24.4 7.8 50 134-183 5-54 (72)
324 PF06156 DUF972: Protein of un 69.5 46 0.00099 25.7 8.3 51 150-200 7-57 (107)
325 PRK09841 cryptic autophosphory 69.4 1.3E+02 0.0029 30.4 15.1 40 57-96 257-296 (726)
326 PF05008 V-SNARE: Vesicle tran 68.3 39 0.00084 23.8 7.7 55 148-202 22-77 (79)
327 PF05529 Bap31: B-cell recepto 68.2 52 0.0011 27.4 9.1 37 46-82 154-190 (192)
328 PRK10803 tol-pal system protei 68.2 51 0.0011 29.2 9.4 46 41-86 56-101 (263)
329 KOG0249|consensus 68.2 1.5E+02 0.0033 30.5 17.0 56 136-191 201-256 (916)
330 KOG4657|consensus 68.0 86 0.0019 27.6 14.8 67 61-127 52-118 (246)
331 TIGR03495 phage_LysB phage lys 67.9 63 0.0014 26.1 11.6 77 24-100 18-94 (135)
332 PF03148 Tektin: Tektin family 67.7 1.1E+02 0.0023 28.6 19.7 119 54-176 245-363 (384)
333 PF07798 DUF1640: Protein of u 67.7 69 0.0015 26.5 15.5 20 98-117 76-95 (177)
334 PF06785 UPF0242: Uncharacteri 67.5 1.1E+02 0.0024 28.6 18.1 50 78-127 124-173 (401)
335 cd00890 Prefoldin Prefoldin is 66.9 54 0.0012 24.9 10.2 43 135-177 85-127 (129)
336 KOG0999|consensus 66.7 1.4E+02 0.0031 29.8 26.3 17 166-182 227-243 (772)
337 COG5185 HEC1 Protein involved 65.8 1.4E+02 0.003 29.3 20.8 153 30-193 269-424 (622)
338 PLN02678 seryl-tRNA synthetase 65.1 51 0.0011 31.7 9.4 61 39-99 40-103 (448)
339 PF06705 SF-assemblin: SF-asse 65.0 94 0.002 27.0 24.9 106 46-157 34-141 (247)
340 PRK11519 tyrosine kinase; Prov 64.7 1.6E+02 0.0036 29.7 16.0 35 59-93 259-293 (719)
341 PRK02793 phi X174 lysis protei 64.6 49 0.0011 23.6 7.7 42 136-177 14-55 (72)
342 PF09744 Jnk-SapK_ap_N: JNK_SA 64.6 80 0.0017 26.1 13.7 52 134-185 93-144 (158)
343 PRK05431 seryl-tRNA synthetase 64.3 45 0.00098 31.6 8.8 28 72-99 71-98 (425)
344 PF05700 BCAS2: Breast carcino 63.9 95 0.0021 26.7 10.9 42 65-106 173-214 (221)
345 PF14915 CCDC144C: CCDC144C pr 63.9 1.2E+02 0.0026 27.8 26.1 70 15-84 88-175 (305)
346 PF08172 CASP_C: CASP C termin 63.7 1.1E+02 0.0023 27.2 13.1 89 21-109 2-135 (248)
347 PF08172 CASP_C: CASP C termin 63.1 88 0.0019 27.7 9.9 47 133-179 89-135 (248)
348 PHA01750 hypothetical protein 62.7 24 0.00052 25.2 4.9 26 15-40 39-64 (75)
349 PF10458 Val_tRNA-synt_C: Valy 62.4 37 0.0008 23.5 6.0 55 37-91 2-63 (66)
350 PRK03947 prefoldin subunit alp 62.1 76 0.0016 24.9 14.1 33 19-51 7-39 (140)
351 PRK00736 hypothetical protein; 62.1 53 0.0012 23.1 7.4 45 133-177 8-52 (68)
352 PF04102 SlyX: SlyX; InterPro 61.9 53 0.0011 23.1 7.4 43 136-178 10-52 (69)
353 KOG4809|consensus 61.9 1.8E+02 0.0038 29.1 22.9 132 67-205 331-468 (654)
354 PRK00295 hypothetical protein; 61.8 54 0.0012 23.1 7.4 44 134-177 9-52 (68)
355 TIGR03752 conj_TIGR03752 integ 61.7 1.4E+02 0.0031 29.0 11.5 47 34-80 61-107 (472)
356 TIGR00414 serS seryl-tRNA synt 61.3 68 0.0015 30.3 9.4 61 39-99 37-101 (418)
357 PF00435 Spectrin: Spectrin re 61.3 53 0.0012 22.9 11.2 60 100-160 39-103 (105)
358 PF04325 DUF465: Protein of un 61.1 39 0.00085 22.0 5.6 45 99-143 3-47 (49)
359 PF04912 Dynamitin: Dynamitin 60.8 1.4E+02 0.0031 27.7 16.1 22 107-128 327-348 (388)
360 PF07227 DUF1423: Protein of u 60.8 1.6E+02 0.0035 28.4 12.4 109 48-156 317-431 (446)
361 PRK13169 DNA replication intia 60.4 79 0.0017 24.6 8.1 49 150-198 7-55 (110)
362 PRK00846 hypothetical protein; 60.3 64 0.0014 23.5 7.6 43 136-178 19-61 (77)
363 KOG2751|consensus 59.7 1.7E+02 0.0037 28.2 14.6 107 32-147 150-256 (447)
364 PRK10929 putative mechanosensi 59.6 2.6E+02 0.0056 30.2 24.7 22 107-128 213-234 (1109)
365 PF15294 Leu_zip: Leucine zipp 59.3 1.4E+02 0.003 27.1 15.4 12 117-128 216-227 (278)
366 PF06428 Sec2p: GDP/GTP exchan 59.0 6.4 0.00014 30.1 1.7 47 126-172 40-86 (100)
367 PF13935 Ead_Ea22: Ead/Ea22-li 58.6 66 0.0014 25.6 7.7 18 154-171 122-139 (139)
368 PF07851 TMPIT: TMPIT-like pro 58.3 1.6E+02 0.0034 27.4 11.9 77 137-213 4-88 (330)
369 PF10779 XhlA: Haemolysin XhlA 58.3 62 0.0014 22.7 7.3 10 139-148 8-17 (71)
370 PF08647 BRE1: BRE1 E3 ubiquit 58.2 76 0.0016 23.7 13.4 61 32-92 10-70 (96)
371 PF13863 DUF4200: Domain of un 57.8 83 0.0018 24.0 15.6 19 96-114 82-100 (126)
372 PRK10869 recombination and rep 57.5 2E+02 0.0043 28.3 23.7 40 14-53 160-199 (553)
373 PF11365 DUF3166: Protein of u 57.5 83 0.0018 23.9 7.9 46 70-115 4-49 (96)
374 PF12777 MT: Microtubule-bindi 56.7 1.6E+02 0.0035 26.9 18.2 53 136-188 220-272 (344)
375 PF04728 LPP: Lipoprotein leuc 56.6 63 0.0014 22.2 7.8 38 51-88 8-45 (56)
376 PF13805 Pil1: Eisosome compon 56.2 1.5E+02 0.0034 26.6 14.3 41 28-68 74-118 (271)
377 PRK10803 tol-pal system protei 55.9 1.2E+02 0.0026 26.8 9.5 64 53-116 40-103 (263)
378 PF07200 Mod_r: Modifier of ru 55.9 1E+02 0.0022 24.4 11.7 65 41-105 29-93 (150)
379 PF11180 DUF2968: Protein of u 55.1 1.4E+02 0.0029 25.6 13.3 84 128-211 103-186 (192)
380 PF05008 V-SNARE: Vesicle tran 54.5 73 0.0016 22.4 7.4 52 39-90 25-77 (79)
381 PRK00888 ftsB cell division pr 54.3 64 0.0014 24.6 6.6 8 78-85 65-72 (105)
382 KOG0804|consensus 54.0 2.2E+02 0.0047 27.7 16.2 30 68-97 348-377 (493)
383 KOG0288|consensus 53.9 2.1E+02 0.0046 27.5 16.2 56 30-85 18-73 (459)
384 PRK14011 prefoldin subunit alp 53.4 1.2E+02 0.0026 24.6 11.9 44 133-176 84-127 (144)
385 PF14257 DUF4349: Domain of un 53.1 52 0.0011 28.7 6.7 58 66-124 131-191 (262)
386 KOG4403|consensus 51.7 2.4E+02 0.0051 27.4 14.3 29 172-200 347-375 (575)
387 PF10243 MIP-T3: Microtubule-b 51.7 4.9 0.00011 39.2 0.0 58 31-88 427-484 (539)
388 PRK09973 putative outer membra 51.6 99 0.0021 23.0 7.0 49 75-123 25-73 (85)
389 PF15456 Uds1: Up-regulated Du 51.4 1.2E+02 0.0026 24.0 11.4 77 137-214 22-109 (124)
390 PF14992 TMCO5: TMCO5 family 51.2 1.9E+02 0.0041 26.2 13.8 31 44-74 9-39 (280)
391 PF08581 Tup_N: Tup N-terminal 50.8 96 0.0021 22.6 11.2 69 21-92 7-75 (79)
392 PRK09841 cryptic autophosphory 50.6 2.8E+02 0.0062 28.0 15.8 25 184-208 375-399 (726)
393 KOG2264|consensus 50.3 2.2E+02 0.0047 28.8 10.8 53 47-99 94-146 (907)
394 PF10205 KLRAQ: Predicted coil 50.2 1.2E+02 0.0025 23.4 11.3 68 47-114 6-73 (102)
395 PF07889 DUF1664: Protein of u 49.9 1.3E+02 0.0028 23.9 12.8 36 60-95 68-103 (126)
396 PF04880 NUDE_C: NUDE protein, 49.8 37 0.0008 28.4 4.9 24 69-92 2-25 (166)
397 COG5570 Uncharacterized small 49.4 42 0.0009 22.9 4.2 50 157-206 4-53 (57)
398 PF10267 Tmemb_cc2: Predicted 49.3 2.4E+02 0.0052 26.8 14.2 39 133-171 279-318 (395)
399 PF15450 DUF4631: Domain of un 49.1 2.7E+02 0.0059 27.4 24.5 183 14-203 236-443 (531)
400 PRK10636 putative ABC transpor 48.9 1.6E+02 0.0035 29.3 10.2 31 96-126 599-629 (638)
401 PF10046 BLOC1_2: Biogenesis o 48.7 1.1E+02 0.0024 22.9 14.0 69 22-94 11-79 (99)
402 COG3352 FlaC Putative archaeal 48.4 1.6E+02 0.0034 24.4 10.2 96 26-121 45-141 (157)
403 PF12761 End3: Actin cytoskele 48.3 1.3E+02 0.0028 25.8 8.1 41 180-220 154-194 (195)
404 PF06698 DUF1192: Protein of u 48.2 54 0.0012 22.7 4.8 30 69-98 23-52 (59)
405 PF04645 DUF603: Protein of un 48.1 1.7E+02 0.0037 24.7 9.6 43 8-50 72-130 (181)
406 PLN02320 seryl-tRNA synthetase 48.1 1.3E+02 0.0028 29.5 9.0 61 39-99 100-162 (502)
407 PF07544 Med9: RNA polymerase 48.0 1E+02 0.0023 22.4 6.6 33 163-195 50-82 (83)
408 TIGR02449 conserved hypothetic 47.8 98 0.0021 21.9 9.0 58 162-219 4-61 (65)
409 TIGR01554 major_cap_HK97 phage 47.6 1.3E+02 0.0028 27.6 8.8 17 30-46 4-20 (378)
410 PRK05431 seryl-tRNA synthetase 47.4 1.8E+02 0.0038 27.6 9.8 33 99-131 70-102 (425)
411 PF02050 FliJ: Flagellar FliJ 47.4 1.1E+02 0.0023 22.2 15.5 78 19-96 6-88 (123)
412 PLN02678 seryl-tRNA synthetase 47.3 2E+02 0.0043 27.7 10.1 71 58-132 38-108 (448)
413 KOG4603|consensus 47.3 1.8E+02 0.0039 24.7 9.9 25 154-178 119-143 (201)
414 COG0172 SerS Seryl-tRNA synthe 47.3 1.4E+02 0.0031 28.6 9.1 26 38-63 35-60 (429)
415 PRK15396 murein lipoprotein; P 47.2 1.1E+02 0.0024 22.3 7.4 44 28-71 28-71 (78)
416 KOG3990|consensus 46.5 80 0.0017 28.4 6.7 34 133-166 228-261 (305)
417 PF07544 Med9: RNA polymerase 46.4 78 0.0017 23.0 5.8 52 119-170 24-78 (83)
418 KOG3595|consensus 45.5 4E+02 0.0087 29.4 13.1 94 23-116 932-1025(1395)
419 TIGR00414 serS seryl-tRNA synt 45.5 2.4E+02 0.0052 26.7 10.3 72 58-132 35-106 (418)
420 PF10224 DUF2205: Predicted co 45.4 1.2E+02 0.0026 22.3 7.3 47 168-214 19-65 (80)
421 PRK13729 conjugal transfer pil 45.0 1.3E+02 0.0028 29.3 8.4 16 194-209 105-120 (475)
422 PF15188 CCDC-167: Coiled-coil 44.9 1.3E+02 0.0028 22.4 7.0 60 95-165 5-64 (85)
423 KOG1937|consensus 44.8 3.1E+02 0.0067 26.8 21.8 10 20-29 233-242 (521)
424 PF10211 Ax_dynein_light: Axon 44.6 1.9E+02 0.0041 24.3 11.0 20 63-82 130-149 (189)
425 KOG4005|consensus 44.5 2.2E+02 0.0048 25.4 9.1 52 78-129 87-138 (292)
426 PF05278 PEARLI-4: Arabidopsis 44.2 2.4E+02 0.0053 25.4 16.7 65 82-146 194-258 (269)
427 PF04859 DUF641: Plant protein 43.8 1E+02 0.0022 24.8 6.4 53 50-102 77-129 (131)
428 PF04129 Vps52: Vps52 / Sac2 f 43.7 3.1E+02 0.0068 26.6 11.5 69 136-204 13-81 (508)
429 PLN03229 acetyl-coenzyme A car 43.6 3.9E+02 0.0085 27.6 20.8 15 135-149 647-661 (762)
430 PF04129 Vps52: Vps52 / Sac2 f 43.5 3.1E+02 0.0068 26.6 11.0 70 152-221 15-84 (508)
431 KOG4593|consensus 43.5 3.8E+02 0.0082 27.4 29.0 44 14-57 94-137 (716)
432 PF10458 Val_tRNA-synt_C: Valy 43.4 1.1E+02 0.0023 21.1 7.7 31 94-124 3-33 (66)
433 PF07798 DUF1640: Protein of u 43.4 1.9E+02 0.004 23.9 15.9 86 34-125 46-136 (177)
434 PF14257 DUF4349: Domain of un 43.4 2E+02 0.0043 25.0 8.9 30 80-109 161-190 (262)
435 cd00089 HR1 Protein kinase C-r 43.2 1.1E+02 0.0024 21.3 7.1 65 15-81 6-70 (72)
436 COG2900 SlyX Uncharacterized p 43.1 1.3E+02 0.0027 21.8 7.8 28 142-169 6-33 (72)
437 PF04871 Uso1_p115_C: Uso1 / p 43.1 1.7E+02 0.0037 23.3 13.1 97 116-212 8-110 (136)
438 PF05546 She9_MDM33: She9 / Md 42.9 1.6E+02 0.0034 25.5 7.9 47 158-204 32-78 (207)
439 KOG3119|consensus 42.0 2.1E+02 0.0045 25.5 8.8 65 12-76 188-252 (269)
440 cd00584 Prefoldin_alpha Prefol 41.8 1.6E+02 0.0035 22.6 11.1 44 133-176 83-126 (129)
441 TIGR01010 BexC_CtrB_KpsE polys 41.8 2.7E+02 0.0059 25.3 14.9 137 83-221 153-306 (362)
442 TIGR03545 conserved hypothetic 41.8 2.2E+02 0.0047 28.3 9.6 28 186-213 230-257 (555)
443 PF10779 XhlA: Haemolysin XhlA 40.8 1.3E+02 0.0027 21.1 7.3 40 69-108 8-47 (71)
444 PF14073 Cep57_CLD: Centrosome 40.8 2.2E+02 0.0049 24.0 21.7 91 21-114 7-97 (178)
445 COG1382 GimC Prefoldin, chaper 40.5 1.8E+02 0.004 23.0 12.3 34 142-175 75-108 (119)
446 PF03670 UPF0184: Uncharacteri 40.4 1.5E+02 0.0033 22.0 7.4 49 16-64 24-72 (83)
447 PF02183 HALZ: Homeobox associ 40.0 1E+02 0.0023 20.0 6.1 31 183-213 9-39 (45)
448 PF05064 Nsp1_C: Nsp1-like C-t 40.0 1.1E+02 0.0023 23.7 5.9 60 161-220 39-98 (116)
449 PF05103 DivIVA: DivIVA protei 39.9 16 0.00034 28.2 1.2 41 23-63 30-70 (131)
450 KOG0992|consensus 39.9 3.9E+02 0.0084 26.5 22.0 41 10-50 237-281 (613)
451 COG2919 Septum formation initi 39.8 1.1E+02 0.0024 23.6 6.1 51 36-87 47-97 (117)
452 PF11365 DUF3166: Protein of u 38.5 1.6E+02 0.0035 22.4 6.5 35 21-55 4-45 (96)
453 PF12240 Angiomotin_C: Angiomo 38.3 2.6E+02 0.0057 24.1 12.5 74 26-99 14-89 (205)
454 PLN02320 seryl-tRNA synthetase 37.8 3E+02 0.0065 27.0 9.8 70 58-132 98-167 (502)
455 PF14712 Snapin_Pallidin: Snap 37.7 1.6E+02 0.0034 21.3 12.4 81 13-93 9-90 (92)
456 PF04880 NUDE_C: NUDE protein, 37.6 75 0.0016 26.5 5.0 19 170-188 29-47 (166)
457 PF10359 Fmp27_WPPW: RNA pol I 37.3 1.6E+02 0.0034 28.4 7.8 65 131-195 164-230 (475)
458 PF06156 DUF972: Protein of un 37.3 1.9E+02 0.0042 22.2 8.3 51 142-192 6-56 (107)
459 KOG4572|consensus 36.9 5.4E+02 0.012 27.3 13.6 19 191-209 1209-1227(1424)
460 KOG4571|consensus 36.9 1E+02 0.0022 28.1 6.0 43 53-95 248-290 (294)
461 TIGR02132 phaR_Bmeg polyhydrox 36.8 2.7E+02 0.0058 23.7 9.5 75 45-119 71-152 (189)
462 PRK11519 tyrosine kinase; Prov 36.8 4.6E+02 0.01 26.5 16.6 23 184-206 375-397 (719)
463 COG3096 MukB Uncharacterized p 36.1 5.4E+02 0.012 27.1 22.7 42 40-81 349-404 (1480)
464 PRK14160 heat shock protein Gr 35.7 2.2E+02 0.0048 24.6 7.8 30 163-192 66-95 (211)
465 PF05064 Nsp1_C: Nsp1-like C-t 35.6 61 0.0013 25.1 3.9 79 43-121 26-104 (116)
466 PF05103 DivIVA: DivIVA protei 35.4 48 0.0011 25.4 3.4 10 109-118 46-55 (131)
467 KOG4593|consensus 35.1 5.1E+02 0.011 26.5 28.2 15 177-191 280-294 (716)
468 PF11471 Sugarporin_N: Maltopo 34.3 86 0.0019 21.7 4.1 29 134-162 29-57 (60)
469 PF08946 Osmo_CC: Osmosensory 34.2 1.2E+02 0.0026 20.0 4.5 25 57-81 16-40 (46)
470 KOG4196|consensus 34.0 2.3E+02 0.005 22.8 6.9 42 161-202 77-118 (135)
471 PF13815 Dzip-like_N: Iguana/D 33.9 1.9E+02 0.0041 22.3 6.5 38 142-179 78-115 (118)
472 PF06428 Sec2p: GDP/GTP exchan 33.6 2.2E+02 0.0047 21.7 8.2 24 191-214 42-65 (100)
473 PF03670 UPF0184: Uncharacteri 33.3 1E+02 0.0022 22.9 4.5 35 94-128 25-59 (83)
474 PRK14011 prefoldin subunit alp 32.9 2.7E+02 0.0058 22.6 8.7 33 61-93 11-43 (144)
475 PF10243 MIP-T3: Microtubule-b 32.9 14 0.00031 35.9 0.0 103 10-115 427-529 (539)
476 PF13094 CENP-Q: CENP-Q, a CEN 32.7 2.6E+02 0.0057 22.4 14.1 120 55-174 22-159 (160)
477 TIGR02132 phaR_Bmeg polyhydrox 32.7 3.1E+02 0.0068 23.3 9.3 82 123-204 72-153 (189)
478 PF09311 Rab5-bind: Rabaptin-l 32.3 1.4E+02 0.0031 24.8 5.9 153 20-173 10-173 (181)
479 PF15254 CCDC14: Coiled-coil d 32.2 6.1E+02 0.013 26.5 19.2 156 19-174 395-559 (861)
480 PRK15396 murein lipoprotein; P 32.2 2E+02 0.0044 21.0 6.8 47 75-121 26-72 (78)
481 PF11544 Spc42p: Spindle pole 32.1 2E+02 0.0044 21.0 7.5 50 50-99 2-51 (76)
482 KOG4460|consensus 32.0 5.4E+02 0.012 25.9 13.9 116 63-209 584-699 (741)
483 PF07989 Microtub_assoc: Micro 32.0 1.9E+02 0.0042 20.7 8.0 71 55-125 2-73 (75)
484 KOG3478|consensus 31.9 2.6E+02 0.0055 22.0 11.1 81 57-137 2-111 (120)
485 KOG4098|consensus 31.8 2.8E+02 0.006 22.5 9.7 74 100-173 20-115 (140)
486 PF15290 Syntaphilin: Golgi-lo 31.4 4.1E+02 0.0089 24.3 12.1 95 76-170 70-164 (305)
487 PF12709 Kinetocho_Slk19: Cent 31.4 2.2E+02 0.0049 21.3 6.8 42 154-198 41-82 (87)
488 PRK11020 hypothetical protein; 31.3 2.2E+02 0.0047 22.5 6.3 51 15-67 2-52 (118)
489 PF07439 DUF1515: Protein of u 31.0 2.6E+02 0.0056 21.9 7.4 58 72-129 6-67 (112)
490 TIGR02209 ftsL_broad cell divi 30.8 1.9E+02 0.0042 20.3 6.2 44 40-85 25-68 (85)
491 PF09763 Sec3_C: Exocyst compl 30.7 5.1E+02 0.011 26.0 10.5 89 111-199 7-99 (701)
492 PF03961 DUF342: Protein of un 30.6 4E+02 0.0087 25.2 9.4 73 56-128 330-408 (451)
493 KOG0992|consensus 30.1 5.6E+02 0.012 25.4 21.0 166 21-195 172-338 (613)
494 PHA03332 membrane glycoprotein 29.6 7.7E+02 0.017 26.9 13.4 104 67-174 891-1002(1328)
495 PF06009 Laminin_II: Laminin D 29.1 19 0.0004 28.7 0.0 108 116-223 3-113 (138)
496 KOG0998|consensus 29.1 1.7E+02 0.0037 30.5 6.9 144 76-219 430-573 (847)
497 PRK13182 racA polar chromosome 29.0 3.3E+02 0.0072 22.7 7.6 57 100-165 90-146 (175)
498 TIGR01554 major_cap_HK97 phage 28.8 3.8E+02 0.0083 24.5 8.7 62 20-81 1-62 (378)
499 KOG0972|consensus 28.7 4.2E+02 0.0091 24.5 8.5 75 149-223 250-324 (384)
500 PF05384 DegS: Sensor protein 28.7 3.4E+02 0.0073 22.4 21.2 151 44-194 4-155 (159)
No 1
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.00 E-value=9.5e-07 Score=90.68 Aligned_cols=58 Identities=19% Similarity=0.278 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q psy5037 156 LEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTE 213 (224)
Q Consensus 156 ~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~ 213 (224)
++..+..+...+..+..++..+..+...+...+..+......+....+.+...+..+.
T Consensus 873 ~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 930 (1164)
T TIGR02169 873 LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE 930 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333334444444444444444443333333
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.98 E-value=1.3e-06 Score=89.72 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=26.2
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 140 MKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQ 208 (224)
Q Consensus 140 ~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~q 208 (224)
..+...+......+..++.++..+......+..++..++.+...+...+..+...+..+...+..+..+
T Consensus 416 ~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~ 484 (1164)
T TIGR02169 416 QRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE 484 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333333333333333
No 3
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.95 E-value=1.5e-06 Score=75.82 Aligned_cols=205 Identities=18% Similarity=0.207 Sum_probs=122.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy5037 16 ATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKES 95 (224)
Q Consensus 16 ~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~ 95 (224)
+...+..+..+|.........+..++..|+..+..+......+...+......+.++.........-+..++.....-+.
T Consensus 13 ~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~ee 92 (237)
T PF00261_consen 13 AEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEE 92 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444555555555555555555555555555555544444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH-------hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q psy5037 96 ERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL-------AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTA 168 (224)
Q Consensus 96 E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~-------~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~ 168 (224)
.+..|..++..+...+...+.++..+...+..+...+ ..+..++..++..|....+.+.+++..-.....+..
T Consensus 93 ri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~ 172 (237)
T PF00261_consen 93 RIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASERED 172 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 4444444444444444444444444444444444444 555666666677777777777777777777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhc
Q psy5037 169 QLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKES 220 (224)
Q Consensus 169 ~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l~ 220 (224)
.++..++.|......+..-...+...|.+|...++.|...|.........+.
T Consensus 173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~ 224 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQ 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888877666655443
No 4
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.93 E-value=2.2e-06 Score=89.64 Aligned_cols=116 Identities=27% Similarity=0.368 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 104 LKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYR 183 (224)
Q Consensus 104 ~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~ 183 (224)
+..+..++..|..+.+.+..++..+..+...+..++..+...+..+...+.....++..+...+..++..+..++.++..
T Consensus 809 ~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~ 888 (1163)
T COG1196 809 LDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEE 888 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444445555555555555666666666666666666666666677777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhh
Q psy5037 184 LGEELAGCQETLDTMLRQKEELRLQLADTENYKTKE 219 (224)
Q Consensus 184 l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l 219 (224)
+...+..+......+...++.+...++.+......+
T Consensus 889 l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 924 (1163)
T COG1196 889 LEEELRELESELAELKEEIEKLRERLEELEAKLERL 924 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777776654444433
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.93 E-value=3.2e-06 Score=86.51 Aligned_cols=36 Identities=8% Similarity=0.279 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 44 LQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHY 79 (224)
Q Consensus 44 lq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~ 79 (224)
++.++..+..+...+..++.....++..+..++..+
T Consensus 731 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~ 766 (1179)
T TIGR02168 731 LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.92 E-value=2.5e-06 Score=89.23 Aligned_cols=120 Identities=24% Similarity=0.320 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~ 179 (224)
+...+..+..++..+..++..+.+++++.......+...+..+..++..+...+..+...+..+......+..++..++.
T Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 870 (1163)
T COG1196 791 LQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEA 870 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666677777777777666677777777777777777777777777777777777888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhh
Q psy5037 180 EKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKE 219 (224)
Q Consensus 180 er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l 219 (224)
++..+...+...+.....++..+..+...+.........+
T Consensus 871 ~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 910 (1163)
T COG1196 871 EKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL 910 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887777777777666554443
No 7
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.82 E-value=1.3e-05 Score=69.81 Aligned_cols=197 Identities=18% Similarity=0.194 Sum_probs=117.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037 13 AKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSK 92 (224)
Q Consensus 13 ~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~ 92 (224)
...+...+......+..+......+...+..+.++|+.+..++..+..+|.......++....+..+-......++.|..
T Consensus 17 ~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~ 96 (237)
T PF00261_consen 17 LEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEE 96 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455555556666666666666666666666666666666666666666666666665555555555555554444444
Q ss_pred HHHHHHH--------------HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHH
Q psy5037 93 KESERLD--------------LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEA 158 (224)
Q Consensus 93 kE~E~~~--------------Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~ 158 (224)
++..... ...++..+...+.+.+.|+..+++.+..+.-++..+.+.+.+++..-..+......|+.
T Consensus 97 lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~ 176 (237)
T PF00261_consen 97 LEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEE 176 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 4444443 55555666667777777777777777777777766666666655555555555455555
Q ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 159 KLEELSH-------VTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQL 209 (224)
Q Consensus 159 qL~~l~~-------~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL 209 (224)
+|..|.. +....+..+..|....+.+..+|...+.....+...++..-..|
T Consensus 177 ~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 177 KIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444 44455555666666666666666666666666666555544443
No 8
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.77 E-value=5e-05 Score=68.05 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=43.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037 13 AKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSK 92 (224)
Q Consensus 13 ~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~ 92 (224)
..+.+.+|..||++||.+...+..+.-++..+..+++++..............+.++..++..+.....--..++..|..
T Consensus 49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~ 128 (312)
T PF00038_consen 49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQS 128 (312)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHH
Confidence 44567777777777777666666666665555555555555444444444444444444444444333333333333333
Q ss_pred HH
Q psy5037 93 KE 94 (224)
Q Consensus 93 kE 94 (224)
+.
T Consensus 129 L~ 130 (312)
T PF00038_consen 129 LK 130 (312)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=98.72 E-value=4.1e-05 Score=77.52 Aligned_cols=151 Identities=18% Similarity=0.253 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037 19 EIDRFKYELNNLELERNRAQSE------VRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSK 92 (224)
Q Consensus 19 e~~~lr~ql~~lr~~r~~a~~E------~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~ 92 (224)
++..|..+++.++...+.+... +..++..++.+..........++.....+..+..++..+..++..+...-..
T Consensus 483 ~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~ 562 (880)
T PRK02224 483 ELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAE 562 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444433332222 2233333333333333333333333333333333333333333333332233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q psy5037 93 KESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQL 170 (224)
Q Consensus 93 kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~l 170 (224)
++.+..++.+.+..++..+..++..+..++ .+.++.-++..+...+..++..+..+......+..+|.+++..+..+
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 563 AEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444333333 23333333333344444444444444333334444444444444443
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=98.70 E-value=5e-05 Score=76.96 Aligned_cols=74 Identities=22% Similarity=0.256 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 134 ESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRL 207 (224)
Q Consensus 134 ~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~ 207 (224)
.+..++..++..+..+...+..+......+......++..+..++.+...+..++..+......+...+..+..
T Consensus 318 ~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~ 391 (880)
T PRK02224 318 ELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEE 391 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333333333344444444444444444443333333333333333333333333
No 11
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.52 E-value=0.00013 Score=73.36 Aligned_cols=100 Identities=15% Similarity=0.205 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5037 27 LNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKF 106 (224)
Q Consensus 27 l~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~ 106 (224)
|+-++............||.|++.+..+....+.-++.....+..+......|.+||..+.+.+..++.++..|-..|+.
T Consensus 324 i~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~ 403 (775)
T PF10174_consen 324 IEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIEN 403 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355555666666667777777777777777777777777777788888888888888888888888888887777777
Q ss_pred HHHHHHHHHhhhhhhhhhhh
Q psy5037 107 ISQETAELENNNHSLDGEMK 126 (224)
Q Consensus 107 l~~e~~~lE~r~~~lE~e~n 126 (224)
|...+..-+..+..+...++
T Consensus 404 Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 404 LEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77766665555555555555
No 12
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.50 E-value=0.0003 Score=67.61 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037 41 VRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD 99 (224)
Q Consensus 41 ~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~ 99 (224)
+..++..++.+......+..++...+.++.++...+..|...+..++..+...+.....
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~ 273 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQ 273 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555555555555544444
No 13
>KOG0161|consensus
Probab=98.50 E-value=0.00032 Score=76.11 Aligned_cols=206 Identities=23% Similarity=0.331 Sum_probs=94.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 10 EREAKLATTEIDRFKYELNNL-------ELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCE 82 (224)
Q Consensus 10 ~~~~~~~~~e~~~lr~ql~~l-------r~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E 82 (224)
++.++....++.-|+.+++.. ..++..+...|+.++..+......+..+.++-...+..+.++...++.-...
T Consensus 928 e~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek 1007 (1930)
T KOG0161|consen 928 ERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEK 1007 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666643 3333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q psy5037 83 VQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEE 162 (224)
Q Consensus 83 ~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~ 162 (224)
+..+.......+....+|...+..-..-...+|...+.++|++..++-....+...+..+..........+..+.+++..
T Consensus 1008 ~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~ 1087 (1930)
T KOG0161|consen 1008 AKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLED 1087 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33333333344444444444443333334445555555555554333333334444444444444444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q psy5037 163 LSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENY 215 (224)
Q Consensus 163 l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~ 215 (224)
...-++.+...+++|......+..+|..-|....+++..+..+...+.++...
T Consensus 1088 e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~ 1140 (1930)
T KOG0161|consen 1088 EQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEE 1140 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555554443
No 14
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.48 E-value=0.00074 Score=60.48 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037 23 FKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLK 102 (224)
Q Consensus 23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle 102 (224)
+..+|..++...+++..++.+++.+++.+..++..+..+++........++..+.....++...-.....++..+..|.+
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e 131 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKE 131 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 34444456677777777777777777777777777777777666666666666666666666666666666666666666
Q ss_pred HHHHHH
Q psy5037 103 HLKFIS 108 (224)
Q Consensus 103 ~~~~l~ 108 (224)
++.++.
T Consensus 132 El~fl~ 137 (312)
T PF00038_consen 132 ELEFLK 137 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.44 E-value=0.00031 Score=74.59 Aligned_cols=71 Identities=8% Similarity=0.134 Sum_probs=34.2
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q psy5037 139 VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGC--QETLDTMLRQKEELRLQL 209 (224)
Q Consensus 139 i~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~--re~~~kld~~~e~l~~qL 209 (224)
+..++..+......+..++..+..++..+..+..++..++..+..+...|.-. ...+..+...+..|..++
T Consensus 972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~ 1044 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEM 1044 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555555555555555555555555555555444 333344444444443333
No 16
>PRK11637 AmiB activator; Provisional
Probab=98.44 E-value=0.00045 Score=64.98 Aligned_cols=82 Identities=10% Similarity=0.170 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy5037 18 TEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESER 97 (224)
Q Consensus 18 ~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~ 97 (224)
.++..+++++..+...+..+.++.+.++..+..+...+..+...|.....++..+..++.....++..++..|.......
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444443333
Q ss_pred HH
Q psy5037 98 LD 99 (224)
Q Consensus 98 ~~ 99 (224)
..
T Consensus 127 ~~ 128 (428)
T PRK11637 127 AA 128 (428)
T ss_pred HH
Confidence 33
No 17
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.41 E-value=0.00029 Score=67.64 Aligned_cols=14 Identities=7% Similarity=0.463 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q psy5037 17 TTEIDRFKYELNNL 30 (224)
Q Consensus 17 ~~e~~~lr~ql~~l 30 (224)
..++..+..++..+
T Consensus 180 ~~~i~~l~~~i~~l 193 (562)
T PHA02562 180 NQQIQTLDMKIDHI 193 (562)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 18
>PRK11637 AmiB activator; Provisional
Probab=98.40 E-value=0.0014 Score=61.70 Aligned_cols=88 Identities=9% Similarity=0.129 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy5037 21 DRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDL 100 (224)
Q Consensus 21 ~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~L 100 (224)
+.++.+|+++...+....+++..++..+..+...+..+..+|......+..+..++.....++..++..|...+..+...
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777777777777777777777777776776666666666666666666666666666665
Q ss_pred HHHHHHHH
Q psy5037 101 LKHLKFIS 108 (224)
Q Consensus 101 le~~~~l~ 108 (224)
.+.+...-
T Consensus 123 ~~~l~~rl 130 (428)
T PRK11637 123 ERLLAAQL 130 (428)
T ss_pred HHHHHHHH
Confidence 55554443
No 19
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.38 E-value=0.00036 Score=74.04 Aligned_cols=161 Identities=15% Similarity=0.162 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------------HHHHHHHHHHHHHHHHHHHHHHH--
Q psy5037 17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTI-------------QQELEASRTEAEDVKLQLQHYCC-- 81 (224)
Q Consensus 17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l-------------~~ele~~e~eleeLk~~~~~~~~-- 81 (224)
..++..++.++..+......+..+...+...+..+..+...+ ..++..+...++.+...+..+.+
T Consensus 743 ~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~ 822 (1311)
T TIGR00606 743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDR 822 (1311)
T ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 345555555555555555555555555555555555544444 67777777777777777766654
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH----------hHHHHHHHHHHHHHHhHHh
Q psy5037 82 EVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL----------AESEKKVMKLEALVQDKDC 151 (224)
Q Consensus 82 E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~----------~~~~~ri~~le~~I~e~~~ 151 (224)
.+..+++.+..+..++..+...+..+..+...+...+..+...++.+.-.. ..+..++..+...+..+..
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~ 902 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR 902 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777666655555555555555555555544443333333 3334444444444444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 152 SIKSLEAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 152 ~i~~~e~qL~~l~~~~~~lE~EL~~l 177 (224)
.|..++.+|..+...+..+..++..+
T Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1311)
T TIGR00606 903 EIKDAKEQDSPLETFLEKDQQEKEEL 928 (1311)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 44444545544444444444444333
No 20
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.35 E-value=0.0018 Score=62.72 Aligned_cols=198 Identities=15% Similarity=0.191 Sum_probs=108.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Q psy5037 13 AKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQ-----------HYCC 81 (224)
Q Consensus 13 ~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~-----------~~~~ 81 (224)
-..+..|+..+|++++.+-..+..+.........-..........|..+|..+...++....... ....
T Consensus 132 L~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~ 211 (522)
T PF05701_consen 132 LDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQ 211 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666555555555555544444444444444444444444444333322111 1123
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHH------------------HHHHHHH
Q psy5037 82 EVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESE------------------KKVMKLE 143 (224)
Q Consensus 82 E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~------------------~ri~~le 143 (224)
+...++..+...+.+...|..+| ..+..++.++...-..+..++-++..+. ..+.+..
T Consensus 212 ~~~~~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~ 287 (522)
T PF05701_consen 212 DAEEWEKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAK 287 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHH
Confidence 33444455555555555555555 3445566666666666666666653332 2245555
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Q psy5037 144 ALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTEN 214 (224)
Q Consensus 144 ~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~ 214 (224)
.++.+....+......+..+...+..|..+|...+.+...+......+...+..|...+..+..+|.+...
T Consensus 288 ~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~ 358 (522)
T PF05701_consen 288 KELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKA 358 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666655433
No 21
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.32 E-value=0.00063 Score=68.60 Aligned_cols=167 Identities=23% Similarity=0.325 Sum_probs=100.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 9 SEREAKLATTEIDRFKYELNNL-------ELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCC 81 (224)
Q Consensus 9 ~~~~~~~~~~e~~~lr~ql~~l-------r~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~ 81 (224)
.+-++.+.-.|+..||..|+.. ......+..+.++++.+|.++.........+|..+...++.|...+.+-..
T Consensus 334 ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ 413 (775)
T PF10174_consen 334 KEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDR 413 (775)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667778888888888863 334444555555555555555555555555555555555555554444444
Q ss_pred HHHHHHHHHh--------------------hHHHHHHH-----------HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q psy5037 82 EVQRIEEILS--------------------KKESERLD-----------LLKHLKFISQETAELENNNHSLDGEMKSCKN 130 (224)
Q Consensus 82 E~~rlE~~i~--------------------~kE~E~~~-----------Lle~~~~l~~e~~~lE~r~~~lE~e~nel~l 130 (224)
.+..+...+. .++.-+.. ..++++....++..|...++.+.+++.+..+
T Consensus 414 ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~ 493 (775)
T PF10174_consen 414 QLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKEL 493 (775)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3333333332 22222222 5677788888888999999999999999888
Q ss_pred hHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 131 LLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQ 175 (224)
Q Consensus 131 e~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~ 175 (224)
.+..+++.+.++-....-..+.|+.++..++..+.....|+.+|.
T Consensus 494 ~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~ 538 (775)
T PF10174_consen 494 QLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLE 538 (775)
T ss_pred HHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 887776666666655555555555555555555555555555553
No 22
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.30 E-value=0.001 Score=66.59 Aligned_cols=209 Identities=16% Similarity=0.211 Sum_probs=158.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy5037 15 LATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE 94 (224)
Q Consensus 15 ~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE 94 (224)
..+.||.+||..|.+.|-.=.++...+..+...=-.+..++..++.+.+.++..+..|...+|.-..-|..+|-.|..--
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888777766666666666555555444556666666666667777777777777777777777777776665
Q ss_pred HHHHHHHHHHHHHH----------------------HHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhH---
Q psy5037 95 SERLDLLKHLKFIS----------------------QETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDK--- 149 (224)
Q Consensus 95 ~E~~~Lle~~~~l~----------------------~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~--- 149 (224)
.-+..+..++..-+ +-.+.+-.|.+++|.++--++.++...++++..++.++.++
T Consensus 502 ~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 502 RQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444443322 22334677889999999999999999999999999988533
Q ss_pred ----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhcCCC
Q psy5037 150 ----DCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKESAPM 223 (224)
Q Consensus 150 ----~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l~~~~ 223 (224)
...++.+-+.|+.|...-..||.-|..-.-=+-.|-..|..+|....-+++.+-.-..++..++.+.+++-+-|
T Consensus 582 ~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 582 EKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33577778888899999999999999988888899999999999999999999999999999999988886644
No 23
>KOG0161|consensus
Probab=98.30 E-value=0.0013 Score=71.55 Aligned_cols=202 Identities=21% Similarity=0.271 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy5037 19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERL 98 (224)
Q Consensus 19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~ 98 (224)
++.-+.-++........++..+.+.++..+..+...+..+...+..+..+......++..+..+|..+++.++.+.++..
T Consensus 909 ~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk 988 (1930)
T KOG0161|consen 909 ELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKK 988 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444455555555555555555555555555555554
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh-------hhhhhhhhhhH-------hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q psy5037 99 DLLKHLKFISQETAELENNNHSL-------DGEMKSCKNLL-------AESEKKVMKLEALVQDKDCSIKSLEAKLEELS 164 (224)
Q Consensus 99 ~Lle~~~~l~~e~~~lE~r~~~l-------E~e~nel~le~-------~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~ 164 (224)
.+.+..+.+...+...+.++.++ ++.+.++...+ ..++-.+..++.+...+...|..+..+.+.+.
T Consensus 989 ~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~ 1068 (1930)
T KOG0161|consen 989 ELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELD 1068 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44443333333333333322222 22222222211 22334444556666666666666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhc
Q psy5037 165 HVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKES 220 (224)
Q Consensus 165 ~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l~ 220 (224)
......+.+|..++.+.+.....+..+...+..|.+.+..+...|..-...++.++
T Consensus 1069 ~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~e 1124 (1930)
T KOG0161|consen 1069 NQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAE 1124 (1930)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777776666666555443
No 24
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.29 E-value=0.004 Score=60.45 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=52.8
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 140 MKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLA 210 (224)
Q Consensus 140 ~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~ 210 (224)
..+..+.......+...+.++.+-.....-|-.+|..+..-|+....+|..+|-.+..+..++.....+|-
T Consensus 279 ~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lk 349 (546)
T PF07888_consen 279 QQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELK 349 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 34455556666667777777777788888888888888888888888888888777777766666555553
No 25
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.29 E-value=0.0019 Score=62.68 Aligned_cols=187 Identities=16% Similarity=0.245 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037 23 FKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLK 102 (224)
Q Consensus 23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle 102 (224)
|..+|..+-..+.++.+.+..|+.....+..++..+...+.....+.+.|+.+.+++......+....+.+.....++..
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ 220 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQ 220 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666666666666666666666666666666666666555555555555554444555555
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhh---hhHhH----HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 103 HLKFISQETAELENNNHSLDGEMKSCK---NLLAE----SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQ 175 (224)
Q Consensus 103 ~~~~l~~e~~~lE~r~~~lE~e~nel~---le~~~----~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~ 175 (224)
++..+..++..+..+....+.....++ .+++. +..++...-.++.+.......+..++..+...+..+++.|.
T Consensus 221 ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lq 300 (546)
T PF07888_consen 221 RIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQ 300 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444444433322222221 11111 11222222222222223333455555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 176 CCQEEKYRLGEELAGCQETLDTMLRQKEELRLQL 209 (224)
Q Consensus 176 ~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL 209 (224)
.-+.+..-+..+|+++....|..-+.....+-+.
T Consensus 301 aSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~ 334 (546)
T PF07888_consen 301 ASQQEAELLRKELSDAVNVRDRTMAELHQARLEA 334 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 5555556666666666665555555444444333
No 26
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=98.29 E-value=0.0018 Score=55.01 Aligned_cols=156 Identities=15% Similarity=0.177 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHH
Q psy5037 21 DRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHY---CCEVQRIEEILSKKESER 97 (224)
Q Consensus 21 ~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~---~~E~~rlE~~i~~kE~E~ 97 (224)
+.|=-++..+-....-+..+|..++..++.+..-+..|..+|.++...+..+..-++.| ..|+..+...+...+.+.
T Consensus 4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~ 83 (193)
T PF14662_consen 4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEEN 83 (193)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777788999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 98 LDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQC 176 (224)
Q Consensus 98 ~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~ 176 (224)
..|..+.+-+..+...|...++.+.-+..-+..+...+..++..|-.........+..|+.-+.-....+.+-......
T Consensus 84 ~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e 162 (193)
T PF14662_consen 84 RSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE 162 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999998888888877766666665555555555555555555544444444433333
No 27
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.24 E-value=0.00069 Score=59.46 Aligned_cols=106 Identities=19% Similarity=0.261 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy5037 22 RFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLL 101 (224)
Q Consensus 22 ~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Ll 101 (224)
.|.-+++-+...+......+...+..++++.....++..++++.+.++..++..+++....+.+++..++... =.
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~-----~~ 88 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK-----DE 88 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cH
Confidence 3333444444444444444444444444444444444444444333333333333333333333333332221 22
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH
Q psy5037 102 KHLKFISQETAELENNNHSLDGEMKSCKNLL 132 (224)
Q Consensus 102 e~~~~l~~e~~~lE~r~~~lE~e~nel~le~ 132 (224)
.+|..|..++..|..+..+++.++..+.-+.
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~ 119 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEI 119 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666665555555553333
No 28
>KOG0250|consensus
Probab=98.23 E-value=0.0035 Score=64.50 Aligned_cols=155 Identities=18% Similarity=0.300 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHH
Q psy5037 59 QQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKK 138 (224)
Q Consensus 59 ~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~r 138 (224)
+.+++.....+.++...+.+.-+.+..+.+.-+....|+..+-.-++.+..+...++..++...+.+...+-....++..
T Consensus 301 ~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~ 380 (1074)
T KOG0250|consen 301 QEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQ 380 (1074)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444555555555556666666777777777777777777777777777777777666666
Q ss_pred HHHHHHHH-HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q psy5037 139 VMKLEALV-QDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTE 213 (224)
Q Consensus 139 i~~le~~I-~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~ 213 (224)
|++++++. ......+...+-.++.|...+..++..+..|+.+...+..++....+......+.+..+...+...+
T Consensus 381 I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 381 IADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS 456 (1074)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666 5556666666666677777777777777777777777777777776666666666666655554444
No 29
>PRK03918 chromosome segregation protein; Provisional
Probab=98.22 E-value=0.0038 Score=63.26 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 17 TTEIDRFKYELNNLELERNRAQSEVRR 43 (224)
Q Consensus 17 ~~e~~~lr~ql~~lr~~r~~a~~E~~r 43 (224)
..++..|..++..+......+..++..
T Consensus 458 ~~ei~~l~~~~~~l~~~~~~l~~~~~~ 484 (880)
T PRK03918 458 TAELKRIEKELKEIEEKERKLRKELRE 484 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 30
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.13 E-value=0.00089 Score=54.39 Aligned_cols=138 Identities=19% Similarity=0.236 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037 20 IDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD 99 (224)
Q Consensus 20 ~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~ 99 (224)
+.+||-..+.+-.+.+.+...+..+.........++..|..++..++.+++.+...++.+..-+...+......+ .
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E----~ 77 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE----Q 77 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH----H
Confidence 346666677777777777777777777777777777777777666666666666666666655555544443333 5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLE 161 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~ 161 (224)
|...+..|..+++..+.++..+...+......-..+..++..++.+....+..+..+..++.
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 77777777777777777776666666555444444444444444444444444444444433
No 31
>KOG0996|consensus
Probab=98.13 E-value=0.003 Score=65.37 Aligned_cols=107 Identities=16% Similarity=0.225 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHH
Q psy5037 26 ELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSK-------KESERL 98 (224)
Q Consensus 26 ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~-------kE~E~~ 98 (224)
.+.+++....++..+..+.+..|..++..+..+.++|+.....+.+++.-...+..++......|.. .+.+..
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777777777777777777777777777777766555555555544444443 333333
Q ss_pred H----HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH
Q psy5037 99 D----LLKHLKFISQETAELENNNHSLDGEMKSCKNLL 132 (224)
Q Consensus 99 ~----Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~ 132 (224)
+ +...-..+++++..++..+..+...+|..+-++
T Consensus 465 e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~ 502 (1293)
T KOG0996|consen 465 EILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSEL 502 (1293)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 222223344444444444444444444444444
No 32
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.11 E-value=0.01 Score=57.59 Aligned_cols=117 Identities=16% Similarity=0.203 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy5037 16 ATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKES 95 (224)
Q Consensus 16 ~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~ 95 (224)
..+++.+.|.|+...-.....+.+++.+++.+++.+.......-...++...-...-...+..+..||.++.+.+.....
T Consensus 114 ~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~ 193 (522)
T PF05701_consen 114 WKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKL 193 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777788888888888888888887777777888888888888888888888888888888776544
Q ss_pred HHHHHHHHHHHH----HHHHHHHHhhhhhhhhhhhhhhhhH
Q psy5037 96 ERLDLLKHLKFI----SQETAELENNNHSLDGEMKSCKNLL 132 (224)
Q Consensus 96 E~~~Lle~~~~l----~~e~~~lE~r~~~lE~e~nel~le~ 132 (224)
...+-.++...+ ......|+..+...+..+..++.++
T Consensus 194 a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 194 AHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322222211 2444566666666666666665555
No 33
>KOG0250|consensus
Probab=98.10 E-value=0.0047 Score=63.62 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5037 152 SIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLAD 211 (224)
Q Consensus 152 ~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~ 211 (224)
.+..+..+++.+...++.|..++.+++.+-.....++...+.....+..+++.....|..
T Consensus 402 k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~ 461 (1074)
T KOG0250|consen 402 KLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKD 461 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333334444444444444444444433
No 34
>KOG0996|consensus
Probab=98.04 E-value=0.0039 Score=64.58 Aligned_cols=192 Identities=16% Similarity=0.210 Sum_probs=122.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy5037 14 KLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKK 93 (224)
Q Consensus 14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~k 93 (224)
|.|-+-+.-|..+++..+..++++.+........+..+..++..|...+...+.++++.. .++..+-..+.+.+..+
T Consensus 408 K~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~---~~l~~~t~~~~~e~~~~ 484 (1293)
T KOG0996|consen 408 KRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEIL---DSLKQETEGIREEIEKL 484 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhhHHHHHHH
Confidence 334444444444444455555555555555555555555555555555555544444433 33444445566666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy5037 94 ESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQ 173 (224)
Q Consensus 94 E~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~E 173 (224)
+.+...++.++-.++++++..++.+..+-..-+.......+++.+.......+.+....+.+.+..|..+.....+.+.+
T Consensus 485 ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~ 564 (1293)
T KOG0996|consen 485 EKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKE 564 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 77777778888888888888888777777777777766677777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 174 VQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQ 208 (224)
Q Consensus 174 L~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~q 208 (224)
|..++.+-..+...+..+|.....+.++....+.+
T Consensus 565 l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~ 599 (1293)
T KOG0996|consen 565 LPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSR 599 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 77777766666666666666666666655554433
No 35
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.02 E-value=0.0099 Score=58.57 Aligned_cols=193 Identities=15% Similarity=0.233 Sum_probs=159.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q psy5037 11 REAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQ----HYCCEVQRI 86 (224)
Q Consensus 11 ~~~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~----~~~~E~~rl 86 (224)
.+..-..+|+..|..||+.+......+..++..+...+..+..+...........+.++. ++.+.. +-..-|.+|
T Consensus 321 ~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~-l~~k~~~lL~d~e~ni~kL 399 (594)
T PF05667_consen 321 DEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK-LKKKTVELLPDAEENIAKL 399 (594)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHH
Confidence 445567899999999999999999999999999999999999999999999988888877 444443 345668999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH----HHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q psy5037 87 EEILSKKESERLDLLKHLKFIS----QETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEE 162 (224)
Q Consensus 87 E~~i~~kE~E~~~Lle~~~~l~----~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~ 162 (224)
++.+..-...+..|..+....+ .++..|.....+.+++.....-++..++..+..+..+|...+..+..+...+..
T Consensus 400 ~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 400 QALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887777655 455677888888888888877777888888989998888888888888887765
Q ss_pred H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 163 L---------SHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEE 204 (224)
Q Consensus 163 l---------~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~ 204 (224)
+ +.++-++-.-++..+.+..++..|...+......+.+++++
T Consensus 480 ~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~R 530 (594)
T PF05667_consen 480 LPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDR 530 (594)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 67788888999999999999999999888888877766554
No 36
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.02 E-value=0.0033 Score=55.21 Aligned_cols=160 Identities=20% Similarity=0.271 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 36 RAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELE 115 (224)
Q Consensus 36 ~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE 115 (224)
.+..++.++.-.+.........+..+++.....+.+++..+.++..+|.+++..|......+.........
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~--------- 84 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA--------- 84 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 33344444444444444444444444444455555555555555555555544444433333332222211
Q ss_pred hhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 116 NNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETL 195 (224)
Q Consensus 116 ~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~ 195 (224)
-.-.-+++.+..+...+..+..+++.+|.+....++.++.++..+..++..++..+..++. .+...+..+++..
T Consensus 85 ---v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~---~~e~e~~~i~e~~ 158 (239)
T COG1579 85 ---VKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEA---RLEEEVAEIREEG 158 (239)
T ss_pred ---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 1223345666666677788888888888888888888888888888888888877766554 4555555555555
Q ss_pred HHHHHHHHHHHHHHh
Q psy5037 196 DTMLRQKEELRLQLA 210 (224)
Q Consensus 196 ~kld~~~e~l~~qL~ 210 (224)
-.+.+....|...++
T Consensus 159 ~~~~~~~~~L~~~l~ 173 (239)
T COG1579 159 QELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHhcC
Confidence 555555555554443
No 37
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.99 E-value=0.011 Score=53.19 Aligned_cols=176 Identities=14% Similarity=0.232 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--------------
Q psy5037 34 RNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD-------------- 99 (224)
Q Consensus 34 r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~-------------- 99 (224)
-+.+.+-+..+...|..++.++..|..+|+.-..-.+-|+.++++|.+.++.+-...+.--.-..+
T Consensus 51 eE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~ 130 (305)
T PF14915_consen 51 EETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVR 130 (305)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHH
Confidence 355667777888899999999999999999999999999999999999988875554432211111
Q ss_pred -----------HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH-------hHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q psy5037 100 -----------LLKHLKFISQETAELENNNHSLDGEMKSCKNLL-------AESEKKVMKLEALVQDKDCSIKSLEAKLE 161 (224)
Q Consensus 100 -----------Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~-------~~~~~ri~~le~~I~e~~~~i~~~e~qL~ 161 (224)
|.+....|+..+...|+++.+++.++.-.+-.+ ++++.-.....-+|.+.+.....-+.+++
T Consensus 131 lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~ 210 (305)
T PF14915_consen 131 LQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVN 210 (305)
T ss_pred HHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444445555555555555555555444433333 33444444444444444444445556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 162 ELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQL 209 (224)
Q Consensus 162 ~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL 209 (224)
.-......+++.|.+++.+.-=|...|..+...-+-.+..+-.++.+.
T Consensus 211 k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f 258 (305)
T PF14915_consen 211 KYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQF 258 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 666777777888888888887777777777766665554444444333
No 38
>KOG4674|consensus
Probab=97.93 E-value=0.013 Score=63.40 Aligned_cols=152 Identities=18% Similarity=0.295 Sum_probs=103.2
Q ss_pred HHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy5037 43 RLQTELYDMN---QHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNH 119 (224)
Q Consensus 43 rlq~dL~~~~---~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~ 119 (224)
-+......+. .-|..|..+.+.....+.+|...+..+..++..+...+..+..++.........+..+..+|=.|++
T Consensus 1216 ~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q 1295 (1822)
T KOG4674|consen 1216 EILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQ 1295 (1822)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444 7788899999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhhh-hhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 120 SLDGEMKSC-KNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELS-----------HVTAQLETQVQCCQEEKYRLGEE 187 (224)
Q Consensus 120 ~lE~e~nel-~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~-----------~~~~~lE~EL~~lk~er~~l~~d 187 (224)
++-...... .-+...+...|..|+.++...+..|.++...+..++ .....+..++.++..-...+.+.
T Consensus 1296 ~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~ 1375 (1822)
T KOG4674|consen 1296 DLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAA 1375 (1822)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887661111 111233344555555555555555555555555555 44444444444444444444444
Q ss_pred HHHHHHH
Q psy5037 188 LAGCQET 194 (224)
Q Consensus 188 L~~~re~ 194 (224)
+......
T Consensus 1376 ~~e~~~q 1382 (1822)
T KOG4674|consen 1376 LSEKNAQ 1382 (1822)
T ss_pred HHHHHHH
Confidence 4444443
No 39
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.91 E-value=0.02 Score=56.02 Aligned_cols=202 Identities=14% Similarity=0.147 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 16 ATTEIDRFKYELNN------------LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEV 83 (224)
Q Consensus 16 ~~~e~~~lr~ql~~------------lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~ 83 (224)
.+.+|..|+.++.. +....+.+...+..+-+.|+.-..-...+.........-+..+....+.+..++
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei 333 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEI 333 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666554 233344444444444444444444444444444444444444444444444444
Q ss_pred HHHHHH----------HhhHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Q psy5037 84 QRIEEI----------LSKKESERLDLLKHLKFISQ-------ETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALV 146 (224)
Q Consensus 84 ~rlE~~----------i~~kE~E~~~Lle~~~~l~~-------e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I 146 (224)
.++... ....+.++..+...|..+.. ..+.+...+..+...++.+..+...+.+.+.++....
T Consensus 334 ~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E 413 (569)
T PRK04778 334 DRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDE 413 (569)
T ss_pred HHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333 22222222222222222222 2233344444444444444444444455555555555
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 147 QDKDCSIKSLEAKLEELSHVTAQ----------------LETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLA 210 (224)
Q Consensus 147 ~e~~~~i~~~e~qL~~l~~~~~~----------------lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~ 210 (224)
.++...+..+...+......+.. +..++..+..+....--++.++..........++.+..+..
T Consensus 414 ~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~ 493 (569)
T PRK04778 414 LEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETE 493 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544433322 24444555554444444455555555555555555555555
Q ss_pred chHHHHH
Q psy5037 211 DTENYKT 217 (224)
Q Consensus 211 ~~~~~~~ 217 (224)
++.....
T Consensus 494 dL~~~a~ 500 (569)
T PRK04778 494 ELVENAT 500 (569)
T ss_pred HHHHHHH
Confidence 5544443
No 40
>KOG0964|consensus
Probab=97.90 E-value=0.015 Score=59.53 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy5037 81 CEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSC 128 (224)
Q Consensus 81 ~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel 128 (224)
..+..+++.|..+..|...+.-.|.++..+-.++-.++..++.....+
T Consensus 328 ~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l 375 (1200)
T KOG0964|consen 328 HVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDL 375 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777777777777666654443
No 41
>KOG0933|consensus
Probab=97.89 E-value=0.026 Score=58.00 Aligned_cols=208 Identities=17% Similarity=0.196 Sum_probs=146.6
Q ss_pred HHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH------------
Q psy5037 12 EAKLATTEIDRFKYELNN-----LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKL------------ 74 (224)
Q Consensus 12 ~~~~~~~e~~~lr~ql~~-----lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~------------ 74 (224)
|-....++++.|+|-.-+ +...+..+..++....+.+..+.........+|+..+.++.+|..
T Consensus 219 E~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~ 298 (1174)
T KOG0933|consen 219 EYQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKA 298 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Confidence 445667788888887665 667778888888888888888888888888888888888888777
Q ss_pred ---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh-------hhhhH------------
Q psy5037 75 ---QLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKS-------CKNLL------------ 132 (224)
Q Consensus 75 ---~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~ne-------l~le~------------ 132 (224)
++.+...+|.+.+..+.-+...+....+..+.++..+...+..+..-+.+... ++-+.
T Consensus 299 L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~ 378 (1174)
T KOG0933|consen 299 LEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEE 378 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777766666666666666666555444444333333 22211
Q ss_pred ----------------hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 133 ----------------AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLD 196 (224)
Q Consensus 133 ----------------~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~ 196 (224)
-++...+.+....+.+....|+.....+.-++..+...+.++.....+.......+......|+
T Consensus 379 ~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve 458 (1174)
T KOG0933|consen 379 LVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVE 458 (1174)
T ss_pred HHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 2246666777777777777777778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHH---HHhchHHHHHhh
Q psy5037 197 TMLRQKEELRL---QLADTENYKTKE 219 (224)
Q Consensus 197 kld~~~e~l~~---qL~~~~~~~~~l 219 (224)
++..+...+.- +..++...+.+|
T Consensus 459 ~l~~~l~~l~~~~~~~e~l~q~~~~l 484 (1174)
T KOG0933|consen 459 KLKKRLQSLGYKIGQEEALKQRRAKL 484 (1174)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 88877777663 333444444444
No 42
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.88 E-value=0.018 Score=51.90 Aligned_cols=177 Identities=19% Similarity=0.265 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Q psy5037 22 RFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILS---------- 91 (224)
Q Consensus 22 ~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~---------- 91 (224)
-|+.+++.++..|+++...++.+.............+..++.++....+++-..++....++..+...++
T Consensus 31 El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~ 110 (294)
T COG1340 31 ELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIK 110 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHH
Confidence 3445555555566666666665555555555555555555555555555555544444444444433333
Q ss_pred hHHHHHHH-----------------HHHHHHHHHHHHHHHHhhh------hhhhhhhhhhhhhHhHHHHHHHHHHHHHHh
Q psy5037 92 KKESERLD-----------------LLKHLKFISQETAELENNN------HSLDGEMKSCKNLLAESEKKVMKLEALVQD 148 (224)
Q Consensus 92 ~kE~E~~~-----------------Lle~~~~l~~e~~~lE~r~------~~lE~e~nel~le~~~~~~ri~~le~~I~e 148 (224)
.++.++.. +-..+..|+..+..|...+ ..+-+++-.++.....+.++|..+-.+++.
T Consensus 111 ~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe 190 (294)
T COG1340 111 SLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQE 190 (294)
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433 5555555666666555322 222233344444444444455444444444
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 149 KDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTM 198 (224)
Q Consensus 149 ~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kl 198 (224)
+-..+-.+=..+.++++..-.+-.++-.+......+...+..+....-.+
T Consensus 191 ~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~ 240 (294)
T COG1340 191 YHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELREL 240 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44444444344444444444444444333333333333333333333333
No 43
>KOG0977|consensus
Probab=97.82 E-value=0.02 Score=55.61 Aligned_cols=150 Identities=17% Similarity=0.249 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhHHHHHHHHH
Q psy5037 30 LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQ--------HYCCEVQRIEEILSKKESERLDLL 101 (224)
Q Consensus 30 lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~--------~~~~E~~rlE~~i~~kE~E~~~Ll 101 (224)
++..+.---+++..|-+.|+.....+.-|+.+=..+..++..++.-++ -|..|+..+...|+.-.+++..+.
T Consensus 33 ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e 112 (546)
T KOG0977|consen 33 IRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLE 112 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555555555555443 245566666666666666666666
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 102 KHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179 (224)
Q Consensus 102 e~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~ 179 (224)
-.+..+..++..+..++..+.......+..+-....+++.++.++.-....|..++..+..++.....|..+|..++.
T Consensus 113 ~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 113 IEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 666666666666666666666665555555555555555555555555555555555555555555555555444443
No 44
>PRK01156 chromosome segregation protein; Provisional
Probab=97.79 E-value=0.058 Score=55.12 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5037 19 EIDRFKYELNNLELERN 35 (224)
Q Consensus 19 e~~~lr~ql~~lr~~r~ 35 (224)
+|..+..++..+...+.
T Consensus 477 ~i~~l~~~i~~l~~~~~ 493 (895)
T PRK01156 477 KKSRLEEKIREIEIEVK 493 (895)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334344433333333
No 45
>KOG0933|consensus
Probab=97.79 E-value=0.035 Score=57.09 Aligned_cols=167 Identities=19% Similarity=0.214 Sum_probs=121.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5037 45 QTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKK----ESERLDLLKHLKFISQETAELENNNHS 120 (224)
Q Consensus 45 q~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~k----E~E~~~Lle~~~~l~~e~~~lE~r~~~ 120 (224)
++..-....++..+...+++++.++.+...-+......+..+|..+..- +++..+|...+..+...++.-...+..
T Consensus 733 ~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek 812 (1174)
T KOG0933|consen 733 QNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEK 812 (1174)
T ss_pred cChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666677777777788888777777778888887777777654 444455888888777777777777777
Q ss_pred hhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 121 LDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLR 200 (224)
Q Consensus 121 lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~ 200 (224)
.+.+...+.++.+.+...+.+++....++...|.+|.+++..+...+...+.++..++.+......-+...-.....+-.
T Consensus 813 ~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~ 892 (1174)
T KOG0933|consen 813 RENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLT 892 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhh
Confidence 77777788888888888888888888888888888888888888888888888877777776666666555555544444
Q ss_pred HHHHHHHHHhc
Q psy5037 201 QKEELRLQLAD 211 (224)
Q Consensus 201 ~~e~l~~qL~~ 211 (224)
..+.+......
T Consensus 893 ~~e~~~~e~~~ 903 (1174)
T KOG0933|consen 893 SQEKCLSEKSD 903 (1174)
T ss_pred HHHHHHHHhhc
Confidence 44444444443
No 46
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.74 E-value=0.017 Score=49.32 Aligned_cols=169 Identities=21% Similarity=0.275 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 19 EIDRFKYELNNLELERNRAQSEVRRLQT-------ELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILS 91 (224)
Q Consensus 19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~-------dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~ 91 (224)
-|..|+.+|..+.....++..||+-|.. .|..+.+....+-.-|..-..++..|+..+..+......++..+.
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk 92 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLK 92 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777764432 233333333444444444444444444444444444444444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh-hhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q psy5037 92 KKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCK-NLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQL 170 (224)
Q Consensus 92 ~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~-le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~l 170 (224)
.++.++..+.+.+..+.. -+..-. .+...+..++..+...+.+....|..++.++.-... .+
T Consensus 93 ~~~~el~k~~~~l~~L~~--------------L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k---~~ 155 (194)
T PF15619_consen 93 DKDEELLKTKDELKHLKK--------------LSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENK---SF 155 (194)
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HH
Confidence 444444443333333222 111111 113444555555555555555555555554443332 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 171 ETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEE 204 (224)
Q Consensus 171 E~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~ 204 (224)
-.+|.........+...+..+...|..|...+..
T Consensus 156 ~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 156 RRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555554443
No 47
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.74 E-value=0.011 Score=47.95 Aligned_cols=118 Identities=18% Similarity=0.269 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh---HhHHHHHHHHHHH
Q psy5037 68 EAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNL---LAESEKKVMKLEA 144 (224)
Q Consensus 68 eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le---~~~~~~ri~~le~ 144 (224)
+.++.-.....+.+.+..++.....++.++..|......+..+++.++.++..+...+...-.. .+++..||..++.
T Consensus 8 E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEe 87 (143)
T PF12718_consen 8 EADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEE 87 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHH
Confidence 3333333334444444444444444444444444444444444444444444333332222111 1234444444444
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 145 LVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLG 185 (224)
Q Consensus 145 ~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~ 185 (224)
++......+......|.........++..++.+..++....
T Consensus 88 ele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E 128 (143)
T PF12718_consen 88 ELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWE 128 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHH
Confidence 44444444444444444444444444444444444444433
No 48
>PRK01156 chromosome segregation protein; Provisional
Probab=97.73 E-value=0.073 Score=54.40 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchH
Q psy5037 188 LAGCQETLDTMLRQKEELRLQLADTE 213 (224)
Q Consensus 188 L~~~re~~~kld~~~e~l~~qL~~~~ 213 (224)
+..+.....++...+..+...++.+.
T Consensus 418 ~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 418 LQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444433
No 49
>KOG0964|consensus
Probab=97.72 E-value=0.066 Score=55.02 Aligned_cols=163 Identities=15% Similarity=0.219 Sum_probs=134.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------------HHHHHHHHHHHHHHhh
Q psy5037 51 MNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLL-------------KHLKFISQETAELENN 117 (224)
Q Consensus 51 ~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Ll-------------e~~~~l~~e~~~lE~r 117 (224)
....++.+..+|.+...++..++-...+++.+-.++...|...++...+|. +.=.-++.++..+-+-
T Consensus 326 ~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~ 405 (1200)
T KOG0964|consen 326 ALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRG 405 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHH
Confidence 445667888899999999999999999999999999999999999888854 3334577888888888
Q ss_pred hhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 118 NHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDT 197 (224)
Q Consensus 118 ~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~k 197 (224)
+.+.-...+-+..++.+++......-.+|..+...|.+...+++.+......+..++..+...|-.+=.+=..++.....
T Consensus 406 i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~ 485 (1200)
T KOG0964|consen 406 INDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIAN 485 (1200)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhchH
Q psy5037 198 MLRQKEELRLQLADTE 213 (224)
Q Consensus 198 ld~~~e~l~~qL~~~~ 213 (224)
+...+...+..|.+..
T Consensus 486 ~~~dl~~~~~~L~~~~ 501 (1200)
T KOG0964|consen 486 LEEDLSRAEKNLRATM 501 (1200)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888877777776543
No 50
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.69 E-value=0.066 Score=57.92 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy5037 21 DRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRT 67 (224)
Q Consensus 21 ~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~ 67 (224)
...+.....+.+........+.++.+.+..+......|..+++....
T Consensus 289 ag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~k 335 (1486)
T PRK04863 289 LELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASD 335 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444433
No 51
>PRK09039 hypothetical protein; Validated
Probab=97.68 E-value=0.018 Score=53.06 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l 177 (224)
..++..|+.|+.++...+.+|.+.+.+..+....+..+...|..+
T Consensus 140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 140 ELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444333
No 52
>KOG0977|consensus
Probab=97.67 E-value=0.024 Score=55.13 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 16 ATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDM 51 (224)
Q Consensus 16 ~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~ 51 (224)
.+.|+.++|+-|+.+.+.+..+..++.++..++..+
T Consensus 90 ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~el 125 (546)
T KOG0977|consen 90 YEAELATARKLLDETARERAKLEIEITKLREELKEL 125 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344444445444444444444444444444444443
No 53
>PRK09039 hypothetical protein; Validated
Probab=97.61 E-value=0.03 Score=51.63 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy5037 17 TTEIDRFKYELNNLELERNR 36 (224)
Q Consensus 17 ~~e~~~lr~ql~~lr~~r~~ 36 (224)
+++|+.+..+|+.+...+.+
T Consensus 45 s~~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 34455555555555444444
No 54
>KOG0976|consensus
Probab=97.60 E-value=0.1 Score=52.77 Aligned_cols=118 Identities=17% Similarity=0.283 Sum_probs=86.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy5037 15 LATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE 94 (224)
Q Consensus 15 ~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE 94 (224)
-.-++...+|+-..-+....-....+++-||..+.+...+.+.++.-|..++..+.+-+.++....++.-.++..++.+-
T Consensus 82 vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~ 161 (1265)
T KOG0976|consen 82 VSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKA 161 (1265)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 34455566666666677777777888888888888888888888888888888888888888888888888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH
Q psy5037 95 SERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL 132 (224)
Q Consensus 95 ~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~ 132 (224)
.+|--..+.++.-...+.+++..+..+-+++|+....+
T Consensus 162 ~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~l 199 (1265)
T KOG0976|consen 162 HDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKAL 199 (1265)
T ss_pred HHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 77777666666666666666666666666666655544
No 55
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.58 E-value=0.055 Score=48.88 Aligned_cols=84 Identities=17% Similarity=0.260 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy5037 22 RFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLL 101 (224)
Q Consensus 22 ~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Ll 101 (224)
-|+.-++.+...++.+.++++.+-..-+........+...+.....+.+++=.+++.|...-..+-+.+..+=++..++.
T Consensus 17 ~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~ 96 (294)
T COG1340 17 QLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELK 96 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777777777777777777766666666666666666666666666665555555555555555444
Q ss_pred HHHH
Q psy5037 102 KHLK 105 (224)
Q Consensus 102 e~~~ 105 (224)
....
T Consensus 97 e~~~ 100 (294)
T COG1340 97 EKRN 100 (294)
T ss_pred HHhh
Confidence 4333
No 56
>KOG4674|consensus
Probab=97.58 E-value=0.11 Score=56.65 Aligned_cols=112 Identities=23% Similarity=0.182 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH----HHH
Q psy5037 94 ESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHV----TAQ 169 (224)
Q Consensus 94 E~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~----~~~ 169 (224)
..++..|.+++.+++.-...++.+....-+...+++.....+...+.-+...+.-....+.+.-.++..++.. +..
T Consensus 142 ~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~ 221 (1822)
T KOG4674|consen 142 ESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQ 221 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3333334444444444444444444433333333333333333333333333333333333333333333333 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 170 LETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEEL 205 (224)
Q Consensus 170 lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l 205 (224)
|+..|.+++.....+...+..++.....|...++.+
T Consensus 222 L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~ 257 (1822)
T KOG4674|consen 222 LEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESL 257 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333333333333333333
No 57
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.55 E-value=0.022 Score=46.22 Aligned_cols=98 Identities=27% Similarity=0.329 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5037 27 LNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKF 106 (224)
Q Consensus 27 l~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~ 106 (224)
|..++...+.+...|-.+..+|+.+......+...-+.+.+++..|+.++..+..+...++..+...-.++..|....+.
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~ 91 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQK 91 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhhhhhhhhh
Q psy5037 107 ISQETAELENNNHSLDGE 124 (224)
Q Consensus 107 l~~e~~~lE~r~~~lE~e 124 (224)
....+..||....++..-
T Consensus 92 ~q~kv~eLE~~~~~~~~~ 109 (140)
T PF10473_consen 92 KQEKVSELESLNSSLENL 109 (140)
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 666666666555444433
No 58
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.51 E-value=0.13 Score=55.69 Aligned_cols=13 Identities=8% Similarity=0.151 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q psy5037 35 NRAQSEVRRLQTE 47 (224)
Q Consensus 35 ~~a~~E~~rlq~d 47 (224)
.++...+..|+.+
T Consensus 317 ~ELe~rL~kLEkQ 329 (1486)
T PRK04863 317 AELNEAESDLEQD 329 (1486)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 59
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.48 E-value=0.12 Score=50.51 Aligned_cols=200 Identities=15% Similarity=0.177 Sum_probs=149.0
Q ss_pred HHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHH
Q psy5037 14 KLATTEIDRFKYELNN-------LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTE----------AEDVKLQL 76 (224)
Q Consensus 14 ~~~~~e~~~lr~ql~~-------lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~e----------leeLk~~~ 76 (224)
+.+...+..+..++|+ --..+..+.+...++...|..+...+..+..+|+.+... ...+..++
T Consensus 278 ~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL 357 (569)
T PRK04778 278 DEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQL 357 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHH
Confidence 3445555555556655 345566777888889999999999999999999988888 88888888
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHH--
Q psy5037 77 QHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIK-- 154 (224)
Q Consensus 77 ~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~-- 154 (224)
+.+...+..+...+.........+.+++..+...+..++.....+...+++++..-..+++++..+...+......+.
T Consensus 358 ~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~ 437 (569)
T PRK04778 358 ESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKS 437 (569)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888888888888888888888888999999999998888888888888888888888888888888887777665443
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q psy5037 155 -------SLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTE 213 (224)
Q Consensus 155 -------~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~ 213 (224)
.|-..+......+..+...|....=--..+..++..+....+.+..+.+.|......+.
T Consensus 438 ~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE 503 (569)
T PRK04778 438 NLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTE 503 (569)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777778888888877764434444444666666666666666665554444433
No 60
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.46 E-value=0.056 Score=46.11 Aligned_cols=171 Identities=17% Similarity=0.228 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5037 39 SEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNN 118 (224)
Q Consensus 39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~ 118 (224)
-.|..|++.+.++...++.+..+-..+..--.--...+..|.+-=+.+-..|.....|+..|..+++........++.++
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444444444444556677777777777888888899999999999999999999999
Q ss_pred hhhhhhhhhhhhhHhHHHHH--------HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 119 HSLDGEMKSCKNLLAESEKK--------VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAG 190 (224)
Q Consensus 119 ~~lE~e~nel~le~~~~~~r--------i~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~ 190 (224)
...++++-..+-.+..+..= -..|..+++.....+..-+..|..|.+.+.- .-...+.+-..-..-..+
T Consensus 92 k~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL---~~k~~~rql~~e~kK~~~ 168 (194)
T PF15619_consen 92 KDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLEL---ENKSFRRQLASEKKKHKE 168 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHH
Confidence 99988888776666333221 2444444555554444444444444442221 122223333334444556
Q ss_pred HHHHHHHHHHHHHHHHHHHhch
Q psy5037 191 CQETLDTMLRQKEELRLQLADT 212 (224)
Q Consensus 191 ~re~~~kld~~~e~l~~qL~~~ 212 (224)
+...|..+...+..|+..|-.+
T Consensus 169 ~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 169 AQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665443
No 61
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.46 E-value=0.032 Score=55.99 Aligned_cols=190 Identities=18% Similarity=0.133 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5037 17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESE 96 (224)
Q Consensus 17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E 96 (224)
--||.-|.+||-++.+.+..+...+.-.|..|+...+.....+.++..+-..+.-|..--.. . +..-..+ .++.
T Consensus 264 ~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~-k-e~~~~~d----~~~~ 337 (717)
T PF09730_consen 264 LSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQED-K-EQQSAED----SEKE 337 (717)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-h-hhhhhhh----cccc
Confidence 36899999999999999999999999999999999998888888888887777777651100 0 0000000 0000
Q ss_pred HHHH--HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 97 RLDL--LKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQV 174 (224)
Q Consensus 97 ~~~L--le~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL 174 (224)
.... -..|.---.....|+.++..+..++..++-++..+..+.+.+.....+- ..-++..+..+...+..++...
T Consensus 338 ~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~e---k~~~~~e~q~L~ekl~~lek~~ 414 (717)
T PF09730_consen 338 RDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQE---KDRLESEVQNLKEKLMSLEKSS 414 (717)
T ss_pred cccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh
Confidence 0000 0111111112344556666666666665555555555555555533332 2223333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q psy5037 175 QCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENY 215 (224)
Q Consensus 175 ~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~ 215 (224)
+.-++....|..+|..+...-....+.+...+-.|.++..-
T Consensus 415 re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEe 455 (717)
T PF09730_consen 415 REDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEE 455 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444333
No 62
>KOG0980|consensus
Probab=97.43 E-value=0.16 Score=51.73 Aligned_cols=146 Identities=16% Similarity=0.196 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy5037 21 DRFKYELNNLELERNRAQSEV---RRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESER 97 (224)
Q Consensus 21 ~~lr~ql~~lr~~r~~a~~E~---~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~ 97 (224)
..||.++.++...+....+-+ .......-......+.+...+......-.+|..+..+..-.+.-.+..|..++.++
T Consensus 389 eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~ 468 (980)
T KOG0980|consen 389 EQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEEN 468 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 388888888888777777766 45555566666777788888888888888998888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q psy5037 98 LDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHV 166 (224)
Q Consensus 98 ~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~ 166 (224)
..|.+++..+.-+...|+.+.++...-+.+++.++..+..++..+...+..+....-..-.+++.+-+.
T Consensus 469 ~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~ 537 (980)
T KOG0980|consen 469 TNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQ 537 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988889888888777666555555555554443
No 63
>KOG0971|consensus
Probab=97.41 E-value=0.2 Score=51.39 Aligned_cols=106 Identities=19% Similarity=0.182 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHH-------HHHhhhhhhhhhhhhhhhhH-----------------hHHHHHHHHHHHHHHhHHhhHHH
Q psy5037 100 LLKHLKFISQETA-------ELENNNHSLDGEMKSCKNLL-----------------AESEKKVMKLEALVQDKDCSIKS 155 (224)
Q Consensus 100 Lle~~~~l~~e~~-------~lE~r~~~lE~e~nel~le~-----------------~~~~~ri~~le~~I~e~~~~i~~ 155 (224)
+-+.+.+.+.|+. .|-.++.++++.+..++-+. ..+++||.-|++.|.+.++.-+-
T Consensus 401 ~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~ 480 (1243)
T KOG0971|consen 401 LQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEM 480 (1243)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554 34456666677777766665 34588888888888888766554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 156 LEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEEL 205 (224)
Q Consensus 156 ~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l 205 (224)
-+.-++.-+.-+..|-+||..+++-+..+.....++.+-.+..|..+-++
T Consensus 481 ~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~Kf 530 (1243)
T KOG0971|consen 481 NEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKF 530 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44445555566667777777777666666666666655555444444333
No 64
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.40 E-value=3.5e-05 Score=78.49 Aligned_cols=205 Identities=20% Similarity=0.257 Sum_probs=0.0
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 8 RSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIE 87 (224)
Q Consensus 8 ~~~~~~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE 87 (224)
.+.+++...++++..|+.+|+.+....+.+..+|..|+.+|.++..........+.+++..+..|..++..+...+..++
T Consensus 402 ~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E 481 (859)
T PF01576_consen 402 AAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAE 481 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678889999999999999998888888888888888888877655554433333333333333333333333333332
Q ss_pred HHHh-------hHHHHHHH----------------------HHHHHHHHHHHHHH-------HHhhhhhhhhhhhhhhhh
Q psy5037 88 EILS-------KKESERLD----------------------LLKHLKFISQETAE-------LENNNHSLDGEMKSCKNL 131 (224)
Q Consensus 88 ~~i~-------~kE~E~~~----------------------Lle~~~~l~~e~~~-------lE~r~~~lE~e~nel~le 131 (224)
+.+. +++-++.. +..+|+.+...++. +-.--..++++++++...
T Consensus 482 ~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ 561 (859)
T PF01576_consen 482 DALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQ 561 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22222222 34444444444421 111123356666666555
Q ss_pred HhHH-------HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 132 LAES-------EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEE 204 (224)
Q Consensus 132 ~~~~-------~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~ 204 (224)
+..+ ...+..+...|.++...++.-....+.+...+..++..+..|+.+...+..++..+...+-.+......
T Consensus 562 ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e 641 (859)
T PF01576_consen 562 LDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDE 641 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5333 222233333333333333333333333444444555555555555555555555555555555555554
Q ss_pred HHHHHhch
Q psy5037 205 LRLQLADT 212 (224)
Q Consensus 205 l~~qL~~~ 212 (224)
+..+++.+
T Consensus 642 ~~~~~~~l 649 (859)
T PF01576_consen 642 LQERLNEL 649 (859)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44444443
No 65
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.39 E-value=0.052 Score=44.08 Aligned_cols=93 Identities=19% Similarity=0.273 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 36 RAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELE 115 (224)
Q Consensus 36 ~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE 115 (224)
....+..+.+..-+.+...+..+.++|+.++.....+..+......+|..+++.|.....++..|...+..++++-..|.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666667777777777777777777777777777778777777777777777777777777776666665
Q ss_pred hhhhhhhhhhhhh
Q psy5037 116 NNNHSLDGEMKSC 128 (224)
Q Consensus 116 ~r~~~lE~e~nel 128 (224)
.-.+...+.+.++
T Consensus 87 k~lq~~q~kv~eL 99 (140)
T PF10473_consen 87 KELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444443
No 66
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.30 E-value=0.087 Score=44.84 Aligned_cols=123 Identities=17% Similarity=0.181 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhH
Q psy5037 55 NMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAE 134 (224)
Q Consensus 55 ~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~ 134 (224)
...+..+++++...+..++.+-.+..+.-.-++.....+..++..|.++-..+..+.+-+-.++.+|-.....++..+..
T Consensus 62 aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~ 141 (193)
T PF14662_consen 62 AKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCE 141 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666666666667777777777776666666666522
Q ss_pred ---H----HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 135 ---S----EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 135 ---~----~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l 177 (224)
+ ..-+.+-...|.++...|..|..-...++..++.||+.|.+.
T Consensus 142 ~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 142 FESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 333344455666677777777777777777777777766554
No 67
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.28 E-value=6.1e-05 Score=76.81 Aligned_cols=201 Identities=20% Similarity=0.283 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 15 LATTEIDRFKYELNNLELERNRAQSEVR--------RLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRI 86 (224)
Q Consensus 15 ~~~~e~~~lr~ql~~lr~~r~~a~~E~~--------rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rl 86 (224)
..+.|+..||++|.......+....+++ -|...++.+..-...+.+.-..+..++++|...+..+..--..+
T Consensus 99 krE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~ 178 (859)
T PF01576_consen 99 KREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEA 178 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777653333333333322 22222333222222233333333333333333333333333333
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q psy5037 87 EEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHV 166 (224)
Q Consensus 87 E~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~ 166 (224)
+..+...+..+.++...+......+..+......+.++++++...++.+...+..+..........+..+..++..-+..
T Consensus 179 Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~ 258 (859)
T PF01576_consen 179 EKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRA 258 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhh
Confidence 33444444444445555555555555555555555555555555555555555555555555556666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q psy5037 167 TAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENY 215 (224)
Q Consensus 167 ~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~ 215 (224)
-..|...|+.+..+...+...+..-..-...+...+..++.++.....+
T Consensus 259 k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K 307 (859)
T PF01576_consen 259 KQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKK 307 (859)
T ss_dssp -------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHH
Confidence 6666666666666555555555555555555555555555555544433
No 68
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.26 E-value=0.13 Score=52.18 Aligned_cols=165 Identities=17% Similarity=0.130 Sum_probs=109.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------------------HHHHHHHHHHHH
Q psy5037 14 KLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQEL-------------------EASRTEAEDVKL 74 (224)
Q Consensus 14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~el-------------------e~~e~eleeLk~ 74 (224)
..++.|+.+|++||+++...+..+...+..|-.-|-..-..+..+..+- -+++..+.++..
T Consensus 20 ekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~ 99 (769)
T PF05911_consen 20 EKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSK 99 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999998766665555555544444444333222222111 134456667777
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHH--HHHHHHHHHHhHHhh
Q psy5037 75 QLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEK--KVMKLEALVQDKDCS 152 (224)
Q Consensus 75 ~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~--ri~~le~~I~e~~~~ 152 (224)
++.....|-..+-..+..++.-+.+|.+.......++..+-.++..++-++++++-++..+.. .|...+++.. ..+
T Consensus 100 ~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~--~~~ 177 (769)
T PF05911_consen 100 RLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYS--RRA 177 (769)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHH
Confidence 777777777778888888888889999999999999999999999999999999999855432 2333333332 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 153 IKSLEAKLEELSHVTAQLETQVQCCQEE 180 (224)
Q Consensus 153 i~~~e~qL~~l~~~~~~lE~EL~~lk~e 180 (224)
.+....|=-+=-+.++.||.|.+.|+.=
T Consensus 178 ae~a~kqhle~vkkiakLEaEC~rLr~l 205 (769)
T PF05911_consen 178 AEAASKQHLESVKKIAKLEAECQRLRAL 205 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333333345688888888887763
No 69
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=97.24 E-value=0.0059 Score=51.68 Aligned_cols=111 Identities=18% Similarity=0.254 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy5037 18 TEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESER 97 (224)
Q Consensus 18 ~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~ 97 (224)
.-+.++-..+-.++.....+-+..+.+...|-.+...++.+..++......+..+...+..+..++..++..|..+.+-+
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777778888888888888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy5037 98 LDLLKHLKFISQETAELENNNHSLDGEMKSC 128 (224)
Q Consensus 98 ~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel 128 (224)
..|.+++..+.-+...+|.++..++.+...|
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997776
No 70
>KOG0018|consensus
Probab=97.20 E-value=0.33 Score=50.50 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhH---HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAE---SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQC 176 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~---~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~ 176 (224)
....|..|..++...- ...+++-....+-...+ ..++..+++.+|......+.....++..|...+..+...+..
T Consensus 364 ~~~ey~rlk~ea~~~~--~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e 441 (1141)
T KOG0018|consen 364 QVEEYERLKEEACKEA--LEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEE 441 (1141)
T ss_pred HHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566665554332 33333333333322222 256777888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q psy5037 177 CQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYK 216 (224)
Q Consensus 177 lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~ 216 (224)
+..+-..+..++..+.+.-..+-..+..+..|+......+
T Consensus 442 ~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr 481 (1141)
T KOG0018|consen 442 LKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADR 481 (1141)
T ss_pred HhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 8888888888888888888888887777777776655443
No 71
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.13 E-value=0.5 Score=50.27 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhcC
Q psy5037 159 KLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKESA 221 (224)
Q Consensus 159 qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l~~ 221 (224)
++..+..++.........+......+...+..++..+++.......++.++..+.....++..
T Consensus 470 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~ 532 (1201)
T PF12128_consen 470 QLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQR 532 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555666666666666666666666666666555555543
No 72
>KOG0971|consensus
Probab=97.08 E-value=0.22 Score=51.11 Aligned_cols=144 Identities=17% Similarity=0.270 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------------HHHHHH
Q psy5037 43 RLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD-----------------LLKHLK 105 (224)
Q Consensus 43 rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~-----------------Lle~~~ 105 (224)
||.|-.+..+.+.+.+.++++.+..++.+|+.....+..+++-+|+.|...-..++. |.+...
T Consensus 386 rLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVk 465 (1243)
T KOG0971|consen 386 RLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVK 465 (1243)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHH
Confidence 444444555677778888888888888888888888888888887777776655554 666677
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhH--------hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 106 FISQETAELENNNHSLDGEMKSCKNLL--------AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 106 ~l~~e~~~lE~r~~~lE~e~nel~le~--------~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l 177 (224)
-|.+++.++|. +++++-.+.+...++ .-+..-+..+..++......+-.+...|-.++.-++.|-+.|+.+
T Consensus 466 lLeetv~dlEa-lee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~ 544 (1243)
T KOG0971|consen 466 LLEETVGDLEA-LEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQEL 544 (1243)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766653 233333333322222 334455567778888888888888888888888899999888888
Q ss_pred HHHHHHHHHH
Q psy5037 178 QEEKYRLGEE 187 (224)
Q Consensus 178 k~er~~l~~d 187 (224)
+++-.+...+
T Consensus 545 ~dq~~Sseee 554 (1243)
T KOG0971|consen 545 TDQQESSEEE 554 (1243)
T ss_pred HhhhhhhHHH
Confidence 8866655443
No 73
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=97.06 E-value=0.062 Score=47.33 Aligned_cols=126 Identities=22% Similarity=0.316 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHH
Q psy5037 63 EASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKL 142 (224)
Q Consensus 63 e~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~l 142 (224)
+..+.+..+|..++..+-.++.+....+...+.....|-++.+.+..+...|+.+...++.....+.............|
T Consensus 1 E~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~L 80 (246)
T PF00769_consen 1 EEAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQL 80 (246)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999999999999999999999999999999999999999999999999998888877776666667778
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 143 EALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEEL 188 (224)
Q Consensus 143 e~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL 188 (224)
..++.++...|..+.............+..+|...+.........|
T Consensus 81 e~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 81 EQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888777777666555554
No 74
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.06 E-value=0.63 Score=50.17 Aligned_cols=86 Identities=14% Similarity=0.093 Sum_probs=45.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 14 KLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQH--NMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILS 91 (224)
Q Consensus 14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e--~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~ 91 (224)
.-++.+|..|..+++.+...+..+......|......+-.+ .......+......+.....++......+........
T Consensus 745 ~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~ 824 (1353)
T TIGR02680 745 AELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWK 824 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777766666665444332 2233333444444444444444444444444444444
Q ss_pred hHHHHHHH
Q psy5037 92 KKESERLD 99 (224)
Q Consensus 92 ~kE~E~~~ 99 (224)
........
T Consensus 825 ~a~~~l~~ 832 (1353)
T TIGR02680 825 QARRELER 832 (1353)
T ss_pred HHHHHHHH
Confidence 44444333
No 75
>KOG0612|consensus
Probab=97.05 E-value=0.56 Score=49.46 Aligned_cols=173 Identities=14% Similarity=0.158 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------------
Q psy5037 37 AQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD----------------- 99 (224)
Q Consensus 37 a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~----------------- 99 (224)
+..++...+..++......+.+...+.++..++++++.........+.++..+-..++.-..+
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e 571 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKE 571 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhh
Confidence 445555555566666666666666666666666666666665555555555544444433332
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~ 179 (224)
+..+++.+.++...++.++..++..-..+-.+...+..-.....+.-.++-..+...+..++++........-++..+++
T Consensus 572 ~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 572 LSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred hhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 33344444444445555555554432222222211222222222222333333333333344444444444444444444
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q psy5037 180 EKYRLGEELAGCQE--TLDTMLRQKEELRLQL 209 (224)
Q Consensus 180 er~~l~~dL~~~re--~~~kld~~~e~l~~qL 209 (224)
.+....+-++.... .-++++..+..+..++
T Consensus 652 l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~ 683 (1317)
T KOG0612|consen 652 LKRENQERISDSEKEALEIKLERKLKMLQNEL 683 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333 4444444444444333
No 76
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.05 E-value=0.00014 Score=72.60 Aligned_cols=196 Identities=20% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 23 FKYELNNLELERNRAQSEVRRLQTELYDMN-----------QHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILS 91 (224)
Q Consensus 23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~-----------~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~ 91 (224)
|-.++..+...++.+..++..++..++... .....+..+++.+..++..+...+.+|..++..++..|.
T Consensus 198 l~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~ 277 (713)
T PF05622_consen 198 LEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEID 277 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566666666677766666555533 233455666777777777777777778777778888887
Q ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHh---hhhhhhhhhhhhhhhH----------hHHHHHHHHHHHHHHhHHhhH--
Q psy5037 92 KKESERLDLL---KHLKFISQETAELEN---NNHSLDGEMKSCKNLL----------AESEKKVMKLEALVQDKDCSI-- 153 (224)
Q Consensus 92 ~kE~E~~~Ll---e~~~~l~~e~~~lE~---r~~~lE~e~nel~le~----------~~~~~ri~~le~~I~e~~~~i-- 153 (224)
.+..++.+|. ..++.++.+++.|-. ++..+++.+...+.-+ ..+++.+..+-..+..++...
T Consensus 278 ~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~ 357 (713)
T PF05622_consen 278 ELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKK 357 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777744 555566666665533 3334555555444433 333333333333333333322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHh
Q psy5037 154 -KSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTK 218 (224)
Q Consensus 154 -~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~ 218 (224)
..+..++..+++.+..|+..+.........+..++..+.+.+..+...++.+..+...+......
T Consensus 358 ~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~ee 423 (713)
T PF05622_consen 358 ARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEE 423 (713)
T ss_dssp ------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23555666677777777777777777777777777777777777777777776666665554443
No 77
>KOG0946|consensus
Probab=97.04 E-value=0.44 Score=48.42 Aligned_cols=208 Identities=13% Similarity=0.112 Sum_probs=103.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q psy5037 14 KLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQ--------- 84 (224)
Q Consensus 14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~--------- 84 (224)
++++.+...+-++.-..+.-+-...-++..++.+..++..++..+..++.....+...|+.+......++.
T Consensus 646 ~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~ 725 (970)
T KOG0946|consen 646 QLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDL 725 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhH
Confidence 34455555555555555555556666666666666666666666666666665555555555555555544
Q ss_pred -HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHH--------------------HHHHHH
Q psy5037 85 -RIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEK--------------------KVMKLE 143 (224)
Q Consensus 85 -rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~--------------------ri~~le 143 (224)
..-+....++.++..++-++.++......+...+..-+..+-+++....++.+ ..+...
T Consensus 726 ~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~ 805 (970)
T KOG0946|consen 726 LQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEES 805 (970)
T ss_pred HhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhh
Confidence 22222223333444444444444444443333332223332333222222211 133334
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhcC
Q psy5037 144 ALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKESA 221 (224)
Q Consensus 144 ~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l~~ 221 (224)
.+.+++...+..++.++..+....+..-..+..+..--..+-....-+...|..+.........-+..+.+.+..+.|
T Consensus 806 ~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~ 883 (970)
T KOG0946|consen 806 TRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEA 883 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHH
Confidence 445555555555666666555555555555555544444444555555555555555555555444444444444433
No 78
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.00 E-value=0.35 Score=48.73 Aligned_cols=127 Identities=20% Similarity=0.263 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy5037 22 RFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLL 101 (224)
Q Consensus 22 ~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Ll 101 (224)
.|..+|..+......+..++.+.+.+.+++...+..+....+..+.+...|+.++..|...=.|+=.+.+.+|.|+-.|.
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQ 110 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQ 110 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 35556666666666667777777777777777777777788888888888888888888888888888999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHH
Q psy5037 102 KHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAK 159 (224)
Q Consensus 102 e~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~q 159 (224)
.+...|+.....+| +++.++..+.+.+.-+..++.+...--.=.+.|
T Consensus 111 Kqvs~Lk~sQvefE-----------~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~q 157 (717)
T PF09730_consen 111 KQVSVLKQSQVEFE-----------GLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQ 157 (717)
T ss_pred HHHHHHHHhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887766665 344444444455555544444444333333333
No 79
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.97 E-value=0.35 Score=45.79 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 151 CSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTML 199 (224)
Q Consensus 151 ~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld 199 (224)
.....+...+.+..+.+..+..++..-+..-..|...-.+++..+-.+.
T Consensus 196 ~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 196 AQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444444444
No 80
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.95 E-value=0.48 Score=47.09 Aligned_cols=110 Identities=18% Similarity=0.263 Sum_probs=71.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------HHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 15 LATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHN----------------MTIQQELEASRTEAEDVKLQLQH 78 (224)
Q Consensus 15 ~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~----------------~~l~~ele~~e~eleeLk~~~~~ 78 (224)
....-+.-|-.++.+++..+......|..|...|..+.... ..+..++..+..+++.|..+++.
T Consensus 26 ~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqa 105 (617)
T PF15070_consen 26 QWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQA 105 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666677777777777777777777765332 36777777888888888888887
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy5037 79 YCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGE 124 (224)
Q Consensus 79 ~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e 124 (224)
.+.+...+..++..++.-+.+|...++.+.....+...-+..+.++
T Consensus 106 qv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsd 151 (617)
T PF15070_consen 106 QVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSD 151 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 7777777766666666666666666666666555444444444433
No 81
>KOG0018|consensus
Probab=96.93 E-value=0.66 Score=48.34 Aligned_cols=36 Identities=11% Similarity=0.288 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHh
Q psy5037 183 RLGEELAGCQETLDTMLRQKEELRLQLADTENYKTK 218 (224)
Q Consensus 183 ~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~ 218 (224)
....++..++.....+-+.+..|..++.++....++
T Consensus 853 ~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~ 888 (1141)
T KOG0018|consen 853 KKEDEINEVKKILRRLVKELTKLDKEITSIESKIER 888 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 344444444444444444555555555544444433
No 82
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.91 E-value=0.53 Score=46.80 Aligned_cols=133 Identities=15% Similarity=0.206 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHH
Q psy5037 31 ELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD---LLKHLKFI 107 (224)
Q Consensus 31 r~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~---Lle~~~~l 107 (224)
......+.+++..|...+......++.+.......+..+.+++..++.+.........++....+.... .+.+=..|
T Consensus 86 q~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eL 165 (617)
T PF15070_consen 86 QAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNREL 165 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHH
Confidence 334444555566666666665566666666666667777777777777776665555555555544444 44455666
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q psy5037 108 SQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEEL 163 (224)
Q Consensus 108 ~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l 163 (224)
...+..+.+.+-.+-.+..++...+.+-..-+..|..++.+....+..+..++..+
T Consensus 166 K~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K 221 (617)
T PF15070_consen 166 KEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELK 221 (617)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67777777777666666555555555555555566655555554444444444444
No 83
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.89 E-value=0.2 Score=50.94 Aligned_cols=167 Identities=20% Similarity=0.259 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5037 41 VRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHS 120 (224)
Q Consensus 41 ~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~ 120 (224)
...+..+++.+..+...+...+..+...++.++.+++..-.-+..+...+.....-...+-.++.....-...+++++..
T Consensus 591 ~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~ 670 (769)
T PF05911_consen 591 KKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKD 670 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 33455555555555555555555555555555555555444444444444444444444444445555555555555555
Q ss_pred hhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHH
Q psy5037 121 LDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC---QEE-KYRLGEELAGCQETLD 196 (224)
Q Consensus 121 lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l---k~e-r~~l~~dL~~~re~~~ 196 (224)
++.+++. +..++..|+.+|..-..-..++....-++...+.....+.... ..+ +..-.-+|+++-....
T Consensus 671 ~e~E~~~-------l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLA 743 (769)
T PF05911_consen 671 LEAEAEE-------LQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLA 743 (769)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHH
Confidence 5555444 4677777777777766666666666666666555555433211 122 2222348889999999
Q ss_pred HHHHHHHHHHHHHhchHH
Q psy5037 197 TMLRQKEELRLQLADTEN 214 (224)
Q Consensus 197 kld~~~e~l~~qL~~~~~ 214 (224)
..+.++-.|..||.++..
T Consensus 744 ECQeTI~sLGkQLksLa~ 761 (769)
T PF05911_consen 744 ECQETIASLGKQLKSLAT 761 (769)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999988753
No 84
>KOG1003|consensus
Probab=96.87 E-value=0.24 Score=42.34 Aligned_cols=174 Identities=17% Similarity=0.170 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHH
Q psy5037 30 LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSK-------KESERLDLLK 102 (224)
Q Consensus 30 lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~-------kE~E~~~Lle 102 (224)
+++++..+..+..+.+..+..+...+.....--.++.+...-|....+..-..|..++.-+.. -+....++--
T Consensus 9 lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVar 88 (205)
T KOG1003|consen 9 LNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVAR 88 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555555444455555555544554444444444444443332 2334444555
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH-------HHHHHHH
Q psy5037 103 HLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTA-------QLETQVQ 175 (224)
Q Consensus 103 ~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~-------~lE~EL~ 175 (224)
.+-.+..++.+.+.+..-.++.+-.+--++.-+.+-..++...-..+......|+.+|-.++..+. -++.-+.
T Consensus 89 kL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVa 168 (205)
T KOG1003|consen 89 KLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVA 168 (205)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 555666667777766666666666665555445555555555555555555555555555554443 3455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 176 CCQEEKYRLGEELAGCQETLDTMLRQKE 203 (224)
Q Consensus 176 ~lk~er~~l~~dL~~~re~~~kld~~~e 203 (224)
.|..+++.+...+...+.....+...++
T Consensus 169 kLeke~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 169 KLEKERDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred HHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6666666666666666655444433333
No 85
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.86 E-value=0.35 Score=44.11 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 137 KKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLD 196 (224)
Q Consensus 137 ~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~ 196 (224)
..+..+..++..+...|......+..++.....+...+..+..++..+..++..+...+.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555555554443
No 86
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.85 E-value=0.32 Score=43.43 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQ 192 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~r 192 (224)
..+......++..+........+++.++..|.....++..=+-.+..+......+..++.
T Consensus 158 ~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 158 KSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 444555555555555555555555555555555555555555555555555555544444
No 87
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.84 E-value=0.89 Score=48.42 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 160 LEELSHVTAQLETQVQCCQEEKYRLGEE 187 (224)
Q Consensus 160 L~~l~~~~~~lE~EL~~lk~er~~l~~d 187 (224)
|..+...+..|+.+|+.....+..+...
T Consensus 773 I~~l~~~i~~L~~~l~~ie~~r~~V~eY 800 (1201)
T PF12128_consen 773 IQQLKQEIEQLEKELKRIEERRAEVIEY 800 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344444444444444444444444333
No 88
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.62 E-value=0.37 Score=41.18 Aligned_cols=139 Identities=21% Similarity=0.210 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5037 17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESE 96 (224)
Q Consensus 17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E 96 (224)
..+|..|+.......+...++..+|.+|..-|..+..++..+...+........ .+....+.+..++..+..+.-+
T Consensus 33 Keei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~----~L~~~k~rl~~~ek~l~~Lk~e 108 (201)
T PF13851_consen 33 KEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQ----SLQNLKARLKELEKELKDLKWE 108 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455666666677777777777776666666666665554433 3344455555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q psy5037 97 RLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSH 165 (224)
Q Consensus 97 ~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~ 165 (224)
...|..+|..+..+-+.|-.+...+=.++.- -..-+..-|+..+......++..+.||.+.-.
T Consensus 109 ~evL~qr~~kle~ErdeL~~kf~~~i~evqQ------k~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 109 HEVLEQRFEKLEQERDELYRKFESAIQEVQQ------KTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777776666544333222 23445566666666666666666666665544
No 89
>KOG4643|consensus
Probab=96.62 E-value=1.1 Score=46.58 Aligned_cols=116 Identities=16% Similarity=0.226 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q psy5037 16 ATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYC--------------- 80 (224)
Q Consensus 16 ~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~--------------- 80 (224)
.+.++..++..+..++...++-...+.++...|+.+..++..+..++.+...+..-++.-+..+.
T Consensus 175 L~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~yke 254 (1195)
T KOG4643|consen 175 LEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKE 254 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccch
Confidence 34556666666666666666666666666666666666666666666655444333222111111
Q ss_pred --HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhhhhhhhhhh
Q psy5037 81 --CEVQRIEEILSKKESERLDLLKHLKFISQETAELENNN--HSLDGEMKSCKNL 131 (224)
Q Consensus 81 --~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~--~~lE~e~nel~le 131 (224)
.+...+.+....+..-+.-|++.+.++.+++..+..+. +.++++|--++-.
T Consensus 255 rlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqk 309 (1195)
T KOG4643|consen 255 RLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQK 309 (1195)
T ss_pred hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHH
Confidence 12222455555555666668888888888888887777 5555555444433
No 90
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.61 E-value=0.81 Score=44.83 Aligned_cols=110 Identities=17% Similarity=0.267 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhh---hhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEM---KSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQC 176 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~---nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~ 176 (224)
+.++.+.+..+++++-.+++=-++++ ..+..++..+..+...+...|.++...-..+...+..+...+..++.+...
T Consensus 318 ~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~ 397 (560)
T PF06160_consen 318 AKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEE 397 (560)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455554444443333222 222222334455555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 177 CQEEKYRLGEELAGCQETLDTMLRQKEELRLQL 209 (224)
Q Consensus 177 lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL 209 (224)
+.+....+..+-..+|+....+...+..+.+.+
T Consensus 398 ~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~l 430 (560)
T PF06160_consen 398 INESLQSLRKDEKEAREKLQKLKQKLREIKRRL 430 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555554444
No 91
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.57 E-value=0.58 Score=42.65 Aligned_cols=194 Identities=18% Similarity=0.222 Sum_probs=140.5
Q ss_pred hHHHHHHHHHHHHH------HHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy5037 16 ATTEIDRFKYELNN------LELER-NRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCE------ 82 (224)
Q Consensus 16 ~~~e~~~lr~ql~~------lr~~r-~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E------ 82 (224)
|--+|+-+-+-|.. +..++ ..+...|+.|....+.+..........+..+.+++.-=..-++-|...
T Consensus 60 ty~Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~ 139 (306)
T PF04849_consen 60 TYNDIDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEP 139 (306)
T ss_pred chhhHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhccc
Confidence 34466666666664 22222 356667777777777777777777777777777765444444444411
Q ss_pred ----------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHH
Q psy5037 83 ----------------------VQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVM 140 (224)
Q Consensus 83 ----------------------~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~ 140 (224)
+.-+-..+..++.|+..|..++..|..+...+|.+-+.+ ++.+-.++..+...|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL---v~dcv~QL~~An~qia 216 (306)
T PF04849_consen 140 ESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL---VLDCVKQLSEANQQIA 216 (306)
T ss_pred ccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH---HHHHHHHhhhcchhHH
Confidence 345566666777777777777777777777777777776 4445566778888999
Q ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy5037 141 KLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADT 212 (224)
Q Consensus 141 ~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~ 212 (224)
.|...++........+..+|+.|...+..+...++.+--+.+.+..-|..+++--..|.+.+..++-.....
T Consensus 217 ~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~ 288 (306)
T PF04849_consen 217 SLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAEC 288 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888888887777766666555443
No 92
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.55 E-value=0.74 Score=43.65 Aligned_cols=66 Identities=11% Similarity=0.213 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 26 ELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILS 91 (224)
Q Consensus 26 ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~ 91 (224)
+|+++........+.+...++....+...+..++.+|....+.+-+....+......|+.+...|.
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~ 104 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLN 104 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333333333333
No 93
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.52 E-value=1.1 Score=45.27 Aligned_cols=94 Identities=17% Similarity=0.280 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037 20 IDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD 99 (224)
Q Consensus 20 ~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~ 99 (224)
+.+|.+.+..++.+.....+-=..|...|.-...-...+..+|..+..+.+.|+.+++..+.--..=...|..+|+...+
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~e 499 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAE 499 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444455555566666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHH
Q psy5037 100 LLKHLKFISQETAE 113 (224)
Q Consensus 100 Lle~~~~l~~e~~~ 113 (224)
...+-..+..++..
T Consensus 500 E~~~R~~lEkQL~e 513 (697)
T PF09726_consen 500 ERRQRASLEKQLQE 513 (697)
T ss_pred HHHHHHHHHHHHHH
Confidence 66665555555543
No 94
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.51 E-value=0.63 Score=42.40 Aligned_cols=179 Identities=19% Similarity=0.172 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------------H---
Q psy5037 41 VRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD-----------------L--- 100 (224)
Q Consensus 41 ~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~-----------------L--- 100 (224)
+.....||.-+..-.+.|-..=..+......|...+......|..+.-.+..+..-..- +
T Consensus 71 LeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~ 150 (306)
T PF04849_consen 71 LEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRN 150 (306)
T ss_pred HHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCcccccc
Confidence 33344555555544444444444445555555555555555555555555444433222 1
Q ss_pred --------HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037 101 --------LKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLET 172 (224)
Q Consensus 101 --------le~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~ 172 (224)
--++..|..-+..||.-+..+-.+.+.+.-+-.+++++-.-| |.++-....+...++..|...++.=.+
T Consensus 151 ~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL---v~dcv~QL~~An~qia~LseELa~k~E 227 (306)
T PF04849_consen 151 ESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL---VLDCVKQLSEANQQIASLSEELARKTE 227 (306)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH---HHHHHHHhhhcchhHHHHHHHHHHHHH
Confidence 123344444444555555555555554444444444443333 555556666777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhcCC
Q psy5037 173 QVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKESAP 222 (224)
Q Consensus 173 EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l~~~ 222 (224)
+....+++...|...+..+...|-.+-...+.+...|........+|.+.
T Consensus 228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aE 277 (306)
T PF04849_consen 228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAE 277 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888888888888888888888888888887777766666543
No 95
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.40 E-value=0.06 Score=45.53 Aligned_cols=114 Identities=21% Similarity=0.248 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHH
Q psy5037 77 QHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSL 156 (224)
Q Consensus 77 ~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~ 156 (224)
.++..-+..+...+...-+.+.++-.++-.+..++..++..+......++.+..+...+..++..+...|.+....++.+
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l 149 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEIL 149 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666666666666777777777777777777888888888888888888888888888888888899989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 157 EAKLEELSHVTAQLETQVQCCQEEKYRLGEELAG 190 (224)
Q Consensus 157 e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~ 190 (224)
...+..+.-....+++.+..++.|...|..-...
T Consensus 150 ~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 150 QDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988999999999999888888765544
No 96
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=96.40 E-value=0.52 Score=40.25 Aligned_cols=116 Identities=14% Similarity=0.184 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH-hHHHHHHHHHHHHHHhHHh
Q psy5037 73 KLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL-AESEKKVMKLEALVQDKDC 151 (224)
Q Consensus 73 k~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~-~~~~~ri~~le~~I~e~~~ 151 (224)
+.-+.++...+.++...+...-.....+..++..+...+..|+.++..+=..- +-++ ..+-.++..++..+..+..
T Consensus 29 ~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g---~edLAr~al~~k~~~e~~~~~l~~ 105 (221)
T PF04012_consen 29 EQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG---REDLAREALQRKADLEEQAERLEQ 105 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444445555566666667777777765542111 1122 2345677778888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 152 SIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGC 191 (224)
Q Consensus 152 ~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~ 191 (224)
.+..+..++..|...+..++..|..++..+..+..-...+
T Consensus 106 ~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a 145 (221)
T PF04012_consen 106 QLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAA 145 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888887776655443
No 97
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.34 E-value=0.83 Score=41.90 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 69 AEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELEN 116 (224)
Q Consensus 69 leeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~ 116 (224)
...+..+...|..++..+...+.....++..+..++..+...+...+.
T Consensus 132 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~ 179 (423)
T TIGR01843 132 QSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISE 179 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555544444444444444443
No 98
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.31 E-value=0.41 Score=38.07 Aligned_cols=73 Identities=23% Similarity=0.291 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy5037 137 KKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADT 212 (224)
Q Consensus 137 ~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~ 212 (224)
..+..++.+.......|..+..........+...+. ....++..+..++..+...|+.|..+-..|=.||.++
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~---sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEA---SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444444444444444444333333332 3455667778888888888888888877777777654
No 99
>KOG0978|consensus
Probab=96.30 E-value=1.4 Score=44.27 Aligned_cols=15 Identities=20% Similarity=0.208 Sum_probs=10.0
Q ss_pred HhHHHHHHHHHHHHH
Q psy5037 15 LATTEIDRFKYELNN 29 (224)
Q Consensus 15 ~~~~e~~~lr~ql~~ 29 (224)
..-.|+.++.+++-.
T Consensus 397 ka~~E~e~l~q~l~~ 411 (698)
T KOG0978|consen 397 KARAETESLLQRLKA 411 (698)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456677777777665
No 100
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.15 E-value=0.75 Score=39.55 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy5037 40 EVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNH 119 (224)
Q Consensus 40 E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~ 119 (224)
||+-|.-.|-+...++..--.+|=.+...+.+....+......+..+.+.+..+..+......++.....++.-|-.++.
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence 45555555555555555555555555555555555555555555555555555555666666666666666666666666
Q ss_pred hhhhhhhhhhhhHhH
Q psy5037 120 SLDGEMKSCKNLLAE 134 (224)
Q Consensus 120 ~lE~e~nel~le~~~ 134 (224)
.++.++..++-++..
T Consensus 91 ~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 91 QLEAELAELREELAC 105 (202)
T ss_pred hhHHHHHHHHHHHHh
Confidence 666666666555533
No 101
>KOG0995|consensus
Probab=96.03 E-value=1.7 Score=42.60 Aligned_cols=59 Identities=19% Similarity=0.346 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 30 LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEE 88 (224)
Q Consensus 30 lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~ 88 (224)
++..+..+...+..+++-+..+.+..+.....++.+..+++.-+.+++.+..+.+.|..
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666655555543
No 102
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=96.02 E-value=0.72 Score=38.23 Aligned_cols=112 Identities=16% Similarity=0.202 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 17 TTEIDRFKYELNNLELERNRAQSEVRRLQ--------TELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEE 88 (224)
Q Consensus 17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq--------~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~ 88 (224)
..+|+.+|-.+..++.....+...++... .|++.+.-+|+.+..+|++...++..|+......+.-++-+..
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~ke 84 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKE 84 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777666666666666554 5889999999999999999999999999999988888888888
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy5037 89 ILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSC 128 (224)
Q Consensus 89 ~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel 128 (224)
.+.....+...+...+......+..+...+..+..+.+.+
T Consensus 85 Kl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~ 124 (177)
T PF13870_consen 85 KLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKL 124 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777766666665555555555555554444444443333
No 103
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.99 E-value=1.2 Score=40.74 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 186 EELAGCQETLDTMLRQKEELRLQL 209 (224)
Q Consensus 186 ~dL~~~re~~~kld~~~e~l~~qL 209 (224)
.++..+......+......+...+
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 104
>KOG1029|consensus
Probab=95.92 E-value=2.3 Score=43.32 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQ 169 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~ 169 (224)
++....+..++....+.|..+..|+.+|+.-+..
T Consensus 548 kdqldelskE~esk~~eidi~n~qlkelk~~~~~ 581 (1118)
T KOG1029|consen 548 KDQLDELSKETESKLNEIDIFNNQLKELKEDVNS 581 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555444433
No 105
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=95.88 E-value=1.1 Score=39.13 Aligned_cols=117 Identities=15% Similarity=0.168 Sum_probs=93.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy5037 14 KLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKK 93 (224)
Q Consensus 14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~k 93 (224)
+++++-|.-+..+|..++.....+...-++++..+..+......+...=...-.-=+ +.-......++..++..+...
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~--E~LAr~al~~~~~le~~~~~~ 104 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN--EDLAREALEEKQSLEDLAKAL 104 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888888888888888888888888877777665443322211 333456778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH
Q psy5037 94 ESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL 132 (224)
Q Consensus 94 E~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~ 132 (224)
......+-.....+...+..|+.+|.++....+.+....
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 105 EAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888877666
No 106
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.87 E-value=1.4 Score=40.39 Aligned_cols=155 Identities=17% Similarity=0.163 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHh
Q psy5037 42 RRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE-----SERLDLLKHLKFISQETAELEN 116 (224)
Q Consensus 42 ~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE-----~E~~~Lle~~~~l~~e~~~lE~ 116 (224)
..|..-|.+....+..+..++..+...+.+++..+.-++.-+++....-.... .++.+|..++..+...+..|+.
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~ 147 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLER 147 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666677777777777777777766666666665555543332221 5667799999999999999999
Q ss_pred hhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 117 NNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLD 196 (224)
Q Consensus 117 r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~ 196 (224)
-++.+-.+..++.-++..+++++.-|..++......-..-=.-|.+|=-.-.=|-+.|..+++|+.-+...+.--+...+
T Consensus 148 d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 148 DLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998899999888777765443311111124444444455666666666666666666666555544
No 107
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.84 E-value=1 Score=38.51 Aligned_cols=98 Identities=22% Similarity=0.331 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037 20 IDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD 99 (224)
Q Consensus 20 ~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~ 99 (224)
|.+|+.++..++.. -......+..+..++..+..-|..+..++.+|+..+..|...-..+... ......
T Consensus 29 IksLKeei~emkk~-------e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~----k~rl~~ 97 (201)
T PF13851_consen 29 IKSLKEEIAEMKKK-------EERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNL----KARLKE 97 (201)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 55566665555543 4445566777788888888889999999999999888888766654433 333445
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKSC 128 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel 128 (224)
+..++..+.-+.+.|+.++..++.+-.++
T Consensus 98 ~ek~l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 98 LEKELKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777777765554
No 108
>KOG0978|consensus
Probab=95.80 E-value=2.5 Score=42.64 Aligned_cols=185 Identities=19% Similarity=0.174 Sum_probs=87.5
Q ss_pred HHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy5037 14 KLATTEIDRFK-YELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRI------ 86 (224)
Q Consensus 14 ~~~~~e~~~lr-~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rl------ 86 (224)
.....+.+-++ +.+|...+++........-|+....... .+-.++...=...++|..+...+..++..-
T Consensus 411 ~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k----~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfk 486 (698)
T KOG0978|consen 411 ALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFK----CLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFK 486 (698)
T ss_pred HHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34445555566 5666666655555555555554444433 344444444444555555555444444443
Q ss_pred ---------------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHh
Q psy5037 87 ---------------EEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDC 151 (224)
Q Consensus 87 ---------------E~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~ 151 (224)
.......+..+..|......+...+..+|.+.+-+-+..+.+-.++......+..+...+.+...
T Consensus 487 lm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~ 566 (698)
T KOG0978|consen 487 LMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQ 566 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555555555556666666666666555555554444444444444444433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 152 SIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQK 202 (224)
Q Consensus 152 ~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~ 202 (224)
..+.+..+++.....+..+...+.....+.+...-....+.+.|..|....
T Consensus 567 ~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kl 617 (698)
T KOG0978|consen 567 SLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKL 617 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333
No 109
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.78 E-value=1.8 Score=41.02 Aligned_cols=72 Identities=11% Similarity=0.200 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 138 KVMKLEALVQDKDCSIKSLEAKLEELSH-----VTAQLETQVQCCQEEKY-RLGEELAGCQETLDTMLRQKEELRLQL 209 (224)
Q Consensus 138 ri~~le~~I~e~~~~i~~~e~qL~~l~~-----~~~~lE~EL~~lk~er~-~l~~dL~~~re~~~kld~~~e~l~~qL 209 (224)
....+..+|......|..++.++..+.. ...+.+..+..++.... .+..++..++..+..+...+.....++
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555432 22233555555554443 566666666666666666666655554
No 110
>KOG0994|consensus
Probab=95.78 E-value=3.3 Score=43.97 Aligned_cols=160 Identities=17% Similarity=0.226 Sum_probs=96.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHH-------HHHhhhhh
Q psy5037 51 MNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD---LLKHLKFISQETA-------ELENNNHS 120 (224)
Q Consensus 51 ~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~---Lle~~~~l~~e~~-------~lE~r~~~ 120 (224)
.-..++.|..+|.+.-..+.+...=+...+..+++++.+.+...+-+.. +...+.++.+-+. ...+-|+.
T Consensus 1509 tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~ 1588 (1758)
T KOG0994|consen 1509 TPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQG 1588 (1758)
T ss_pred CHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345667777777777777777777888888888887777766555443 4555555544443 33444445
Q ss_pred hhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 121 LDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLR 200 (224)
Q Consensus 121 lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~ 200 (224)
++..+--.+--+..++++.+..++-....-..+..++.-+++|+.....-..+-+.....-..++..-..++.....|+.
T Consensus 1589 a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~ 1668 (1758)
T KOG0994|consen 1589 ADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQK 1668 (1758)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444444455555555555555555555556665555555555555555555555556666666666666666666
Q ss_pred HHHHHHHHHh
Q psy5037 201 QKEELRLQLA 210 (224)
Q Consensus 201 ~~e~l~~qL~ 210 (224)
..+.+..-+.
T Consensus 1669 ~~~~~~~l~~ 1678 (1758)
T KOG0994|consen 1669 YYELVDRLLE 1678 (1758)
T ss_pred HHHHHHHHHH
Confidence 6666555444
No 111
>KOG0963|consensus
Probab=95.73 E-value=2.4 Score=41.97 Aligned_cols=168 Identities=20% Similarity=0.254 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----------H--------HHHHH
Q psy5037 44 LQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERL-----------D--------LLKHL 104 (224)
Q Consensus 44 lq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~-----------~--------Lle~~ 104 (224)
+..++..+..+++.+...+++...++.+++.+--.+.....++...-...+-.+. . |.++-
T Consensus 112 ~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~ 191 (629)
T KOG0963|consen 112 LLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEE 191 (629)
T ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555666666666666666555554433333322222221111111111 1 66666
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhH-------------------------hHHHHHHHHHHHHHHhHHhhH------
Q psy5037 105 KFISQETAELENNNHSLDGEMKSCKNLL-------------------------AESEKKVMKLEALVQDKDCSI------ 153 (224)
Q Consensus 105 ~~l~~e~~~lE~r~~~lE~e~nel~le~-------------------------~~~~~ri~~le~~I~e~~~~i------ 153 (224)
..+.+.+..++.++.++.+.+-....++ ..++.+|-.++++++.+....
T Consensus 192 ~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~ 271 (629)
T KOG0963|consen 192 QNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSS 271 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 6666666777777766655554444444 445777777777776665443
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5037 154 ---------KSLEAKLEELSHVTAQLETQVQCC----QEEKYRLGEELAGCQETLDTMLRQKEELRLQLAD 211 (224)
Q Consensus 154 ---------~~~e~qL~~l~~~~~~lE~EL~~l----k~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~ 211 (224)
......|..+..-++.|-.+++.+ ..++......++.+........+.++.+..+|++
T Consensus 272 ~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 272 KKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred hhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444433 2344444555555555555555555555555544
No 112
>KOG0612|consensus
Probab=95.72 E-value=3.5 Score=43.82 Aligned_cols=127 Identities=22% Similarity=0.220 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q psy5037 25 YELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRI------------------ 86 (224)
Q Consensus 25 ~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rl------------------ 86 (224)
+++...+..+..+...|+.++..++.+...+..+....+.+......+.....+++++...+
T Consensus 501 ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~ 580 (1317)
T KOG0612|consen 501 EKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQEL 580 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHh
Confidence 34455778888888899999999998888888887777766666666665555555554422
Q ss_pred ------HHHHhhHHHHHHH--------------HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Q psy5037 87 ------EEILSKKESERLD--------------LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALV 146 (224)
Q Consensus 87 ------E~~i~~kE~E~~~--------------Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I 146 (224)
++.+.-++..-.. .-.+...+.+.+..+.+.+.++++.......++.-++.-.....+.+
T Consensus 581 e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~ 660 (1317)
T KOG0612|consen 581 EENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERI 660 (1317)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 2222222111111 33333444555556666677776666666666655544444444444
Q ss_pred HhHHh
Q psy5037 147 QDKDC 151 (224)
Q Consensus 147 ~e~~~ 151 (224)
.+.+.
T Consensus 661 ~~~ek 665 (1317)
T KOG0612|consen 661 SDSEK 665 (1317)
T ss_pred HHHHH
Confidence 44443
No 113
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.63 E-value=2.6 Score=41.78 Aligned_cols=181 Identities=16% Similarity=0.185 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHH
Q psy5037 36 RAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDL---LKHLKFISQETA 112 (224)
Q Consensus 36 ~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~L---le~~~~l~~e~~ 112 (224)
...+++..|+..|..+...+..+..++......+..+..++.....+..+++..+.-+++-..=| -..+..|..-++
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~ 404 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVE 404 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444443333332222211 133445555555
Q ss_pred HHHhhhhhhhhhhhhhhhhH----hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy5037 113 ELENNNHSLDGEMKSCKNLL----AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKY------ 182 (224)
Q Consensus 113 ~lE~r~~~lE~e~nel~le~----~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~------ 182 (224)
.-..++..+.+.-...+.++ ..++....+...+.......|+.+..++..+...+..-++...+|..+..
T Consensus 405 ~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~ 484 (594)
T PF05667_consen 405 ASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV 484 (594)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 55555555555555555555 33344444333444444444444444444443333333333333333322
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q psy5037 183 ----------RLGEELAGCQETLDTMLRQKEELRLQLADTENYK 216 (224)
Q Consensus 183 ----------~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~ 216 (224)
++-..+.--+..+.+.-..--.|+.++|++..+.
T Consensus 485 ~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL 528 (594)
T PF05667_consen 485 NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKL 528 (594)
T ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333334444555555555556666555544
No 114
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.62 E-value=4.2 Score=44.04 Aligned_cols=79 Identities=11% Similarity=0.129 Sum_probs=40.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 12 EAKLATTEIDRFKYELNNLELERNRAQSEVRRLQT--ELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEI 89 (224)
Q Consensus 12 ~~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~--dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~ 89 (224)
+..-...+|..+..++.++...+..+..+...+=. ++...-.........+.....++......+......+..+...
T Consensus 750 ~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~ 829 (1353)
T TIGR02680 750 RLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARRE 829 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666666554433 3444444444444444444444444444444444444444443
Q ss_pred H
Q psy5037 90 L 90 (224)
Q Consensus 90 i 90 (224)
+
T Consensus 830 l 830 (1353)
T TIGR02680 830 L 830 (1353)
T ss_pred H
Confidence 3
No 115
>KOG0995|consensus
Probab=95.56 E-value=2.7 Score=41.30 Aligned_cols=74 Identities=12% Similarity=0.161 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADT 212 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~ 212 (224)
...++..+.+..-.+..+....+-|+++...+..++.+|..+-..-..+.. .++++-.+.+..++.+..++..+
T Consensus 431 ~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~---e~eee~~k~~~E~e~le~~l~~l 504 (581)
T KOG0995|consen 431 SEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKE---EAEEEWKKCRKEIEKLEEELLNL 504 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555566666666666666666555443333332 23334444445555555554443
No 116
>KOG0963|consensus
Probab=95.55 E-value=2.8 Score=41.51 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQE 193 (224)
Q Consensus 135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re 193 (224)
++.--+++-..+..|-.+|..++.++..+...+.+|+..|..- .+.+.++.+|+-++.
T Consensus 301 i~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 301 IERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHH
Confidence 3445567788888888999999999999999999999888775 677888888877764
No 117
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.51 E-value=2.4 Score=40.42 Aligned_cols=41 Identities=7% Similarity=0.013 Sum_probs=21.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy5037 85 RIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEM 125 (224)
Q Consensus 85 rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~ 125 (224)
.+...+..++.++..+...|..-+-.+..+..++..+...+
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l 291 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQK 291 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Confidence 34445555666666665555544444444444444444443
No 118
>KOG0976|consensus
Probab=95.50 E-value=3.5 Score=42.29 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5037 17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESE 96 (224)
Q Consensus 17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E 96 (224)
+-+..-+.+||--+..+-.....+...||+-+..+.......+-+|+....++..+...+.....+|-.+=+.+-.+.-+
T Consensus 98 Eddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~ 177 (1265)
T KOG0976|consen 98 EDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEE 177 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH
Confidence 33344444444444333344444444444444444444444444444444444444444444444444444444444333
Q ss_pred HHH
Q psy5037 97 RLD 99 (224)
Q Consensus 97 ~~~ 99 (224)
+.+
T Consensus 178 lt~ 180 (1265)
T KOG0976|consen 178 LNE 180 (1265)
T ss_pred HhH
Confidence 333
No 119
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.49 E-value=0.7 Score=36.54 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=16.3
Q ss_pred HHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHH
Q psy5037 113 ELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKD 150 (224)
Q Consensus 113 ~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~ 150 (224)
.+-+.++.+||++..++-++..+......+..+|....
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~ 57 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLM 57 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333
No 120
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.45 E-value=0.74 Score=36.40 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=7.1
Q ss_pred HHHHHHHHhhHHHHHHHH
Q psy5037 83 VQRIEEILSKKESERLDL 100 (224)
Q Consensus 83 ~~rlE~~i~~kE~E~~~L 100 (224)
|.++.+.|..++.|+..+
T Consensus 18 ve~L~s~lr~~E~E~~~l 35 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASL 35 (120)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444443333
No 121
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.43 E-value=0.004 Score=62.43 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5037 17 TTEIDRFKYELNNLEL 32 (224)
Q Consensus 17 ~~e~~~lr~ql~~lr~ 32 (224)
..++..++.+|+.+..
T Consensus 191 ~~e~~~l~~~le~~~~ 206 (722)
T PF05557_consen 191 ESELEELKEQLEELQS 206 (722)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 122
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.43 E-value=3.8 Score=42.33 Aligned_cols=119 Identities=24% Similarity=0.301 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhH-----------HHHHHHHHHHHHHhHHhhHHHHHHHHH
Q psy5037 93 KESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAE-----------SEKKVMKLEALVQDKDCSIKSLEAKLE 161 (224)
Q Consensus 93 kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~-----------~~~ri~~le~~I~e~~~~i~~~e~qL~ 161 (224)
....+..+.+.+..+...+..++..+..+...+.++...... +..+...++..+......+..+..++.
T Consensus 313 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~ 392 (908)
T COG0419 313 LLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQ 392 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444455666666666666666666666655555333311 122223333333322223333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5037 162 ELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLAD 211 (224)
Q Consensus 162 ~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~ 211 (224)
.+......+...+..+......+...+..+...+..+...+..+...+..
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 393 ELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444
No 123
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.37 E-value=2.8 Score=40.46 Aligned_cols=89 Identities=13% Similarity=0.212 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5037 17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESE 96 (224)
Q Consensus 17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E 96 (224)
-++|+.|+-|.+.+-.. .++...+...+..+...-.++.....-.+.-...|+.+.++|-+-|.++...|..+|.+
T Consensus 270 ~~~i~~lk~~n~~l~e~----i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEee 345 (622)
T COG5185 270 NTDIANLKTQNDNLYEK----IQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEE 345 (622)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 45666666666654333 33344455555555566666666666666667777777777777777777777777777
Q ss_pred HHHHHHHHHHHHH
Q psy5037 97 RLDLLKHLKFISQ 109 (224)
Q Consensus 97 ~~~Lle~~~~l~~ 109 (224)
+..|..+.+.|+.
T Consensus 346 i~~L~~~~d~L~~ 358 (622)
T COG5185 346 IKALQSNIDELHK 358 (622)
T ss_pred HHHHHhhHHHHHH
Confidence 7664444444333
No 124
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=95.34 E-value=0.45 Score=36.61 Aligned_cols=79 Identities=16% Similarity=0.336 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH----------------------hHHHHHHHHHHHHHHhHHhhHHHH
Q psy5037 99 DLLKHLKFISQETAELENNNHSLDGEMKSCKNLL----------------------AESEKKVMKLEALVQDKDCSIKSL 156 (224)
Q Consensus 99 ~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~----------------------~~~~~ri~~le~~I~e~~~~i~~~ 156 (224)
.+..+|..+..++..+-..+..+++.+++..+=+ .+..+=+..++.+|...+..|..+
T Consensus 7 ~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~l 86 (110)
T TIGR02338 7 NQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTL 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555444 233566678888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5037 157 EAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 157 e~qL~~l~~~~~~lE~EL~~l 177 (224)
+.++..+...+.+++..|+.+
T Consensus 87 ek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 87 QRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888765
No 125
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=95.32 E-value=1.7 Score=37.46 Aligned_cols=109 Identities=10% Similarity=0.142 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q psy5037 82 EVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLE 161 (224)
Q Consensus 82 E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~ 161 (224)
.+..+...+...-.....+..++..+...+..|+++...+=..=++ -|-+..+ .++......+..+...+.....++.
T Consensus 39 ~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~E-dLAr~Al-~~k~~~~~~~~~l~~~~~~~~~~v~ 116 (219)
T TIGR02977 39 TLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGRE-DLARAAL-IEKQKAQELAEALERELAAVEETLA 116 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444455556666777777788888887766444332 2333333 3667777777777777777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 162 ELSHVTAQLETQVQCCQEEKYRLGEELAGCQ 192 (224)
Q Consensus 162 ~l~~~~~~lE~EL~~lk~er~~l~~dL~~~r 192 (224)
.+...+..|+..+..++..+..+..-...++
T Consensus 117 ~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 117 KLQEDIAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888777775555554433
No 126
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=95.32 E-value=0.023 Score=51.98 Aligned_cols=128 Identities=13% Similarity=0.178 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy5037 18 TEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESER 97 (224)
Q Consensus 18 ~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~ 97 (224)
-++..++.-|.++......+...++.+...+..+...+..+...|.+....+..|...++.+..-|..+...|...-.-+
T Consensus 28 GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~l 107 (326)
T PF04582_consen 28 GDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTL 107 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhh
Confidence 35556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHH
Q psy5037 98 LDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEAL 145 (224)
Q Consensus 98 ~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~ 145 (224)
......+..|...+..+...+-++.+.++..-+.+-+++.|++.++..
T Consensus 108 s~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 108 SDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 666666666666666666666666666666666666666666666644
No 127
>KOG0980|consensus
Probab=95.26 E-value=4.3 Score=41.85 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEEL 188 (224)
Q Consensus 135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL 188 (224)
+.+.+..+...+.....+-...+...++..+.+..|+.||.-+..+-..++..+
T Consensus 464 ~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~ 517 (980)
T KOG0980|consen 464 VEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTL 517 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444444444444444444444443
No 128
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.24 E-value=1 Score=39.41 Aligned_cols=95 Identities=14% Similarity=0.068 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037 93 KESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLET 172 (224)
Q Consensus 93 kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~ 172 (224)
|..+...+..++..--+.++.-+.-+.+...+.+.|..|+....+.+......|...++.|...+++.......+..+.+
T Consensus 9 K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 9 KTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444555555555555555555555555555555555555566556655555555555555
Q ss_pred HHHHHHHHHHHHHHH
Q psy5037 173 QVQCCQEEKYRLGEE 187 (224)
Q Consensus 173 EL~~lk~er~~l~~d 187 (224)
++.-|+++.+.+..+
T Consensus 89 ey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 89 EYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555544
No 129
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.20 E-value=0.38 Score=34.41 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 16 ATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHY 79 (224)
Q Consensus 16 ~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~ 79 (224)
.+.++.+|+..||.+.+..+.....+..|...=+.+...+...-.++..+..+++.++.++..+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888877777777777777777766666666666666666666666666665554
No 130
>KOG0243|consensus
Probab=95.07 E-value=5.3 Score=41.91 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~ 179 (224)
+......+..+...++.++++-..++..+.-+...+...+...+.-|............+-..++.....+-..+..+..
T Consensus 474 ~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~ 553 (1041)
T KOG0243|consen 474 QLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFE 553 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666666666665555555555555544444445554444444444455555555555555555554
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5037 180 EKYRLGEELAGCQETLDTM 198 (224)
Q Consensus 180 er~~l~~dL~~~re~~~kl 198 (224)
...........-+...+.+
T Consensus 554 kld~~~~~~d~n~~~~~~~ 572 (1041)
T KOG0243|consen 554 KLDRKDRLDDDNQEVIDDF 572 (1041)
T ss_pred HhhhhhccccccHHHHHHH
Confidence 4444444443333333333
No 131
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.05 E-value=0.023 Score=57.08 Aligned_cols=88 Identities=24% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037 23 FKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLK 102 (224)
Q Consensus 23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle 102 (224)
+.+-|.+++...-.+..+++.++.++..+...+..+..++..+...+.+++..+.....-+.+++....-..+|++-|-.
T Consensus 341 l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~ 420 (722)
T PF05557_consen 341 LARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRA 420 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666666666666666666666666666666666666666665555666655554
Q ss_pred HHHHHHHH
Q psy5037 103 HLKFISQE 110 (224)
Q Consensus 103 ~~~~l~~e 110 (224)
++.+...+
T Consensus 421 ~L~syd~e 428 (722)
T PF05557_consen 421 QLKSYDKE 428 (722)
T ss_dssp --------
T ss_pred HHHHhhhh
Confidence 44444443
No 132
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=95.00 E-value=1.3 Score=34.40 Aligned_cols=99 Identities=11% Similarity=0.080 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy5037 34 RNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAE 113 (224)
Q Consensus 34 r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~ 113 (224)
+..+..-...++..|..+.+.++...--++.+..+.+.|+..+..+.++-..+...+..+.+.+.++...+..-..--..
T Consensus 4 ~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~ 83 (107)
T PF09304_consen 4 KEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLE 83 (107)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555667777777777777777777777777777777777777777777777777777777777777764333347
Q ss_pred HHhhhhhhhhhhhhhhhhH
Q psy5037 114 LENNNHSLDGEMKSCKNLL 132 (224)
Q Consensus 114 lE~r~~~lE~e~nel~le~ 132 (224)
+++++-..+.+.+.+.+-+
T Consensus 84 l~~r~~k~~~dka~lel~l 102 (107)
T PF09304_consen 84 LESRLLKAQKDKAILELKL 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHH
Confidence 7777777777777665544
No 133
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.99 E-value=1.8 Score=35.99 Aligned_cols=68 Identities=15% Similarity=0.328 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRI 86 (224)
Q Consensus 19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rl 86 (224)
++.....++..+..+.++....+..++..+....................+..++.....+..++..+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIREL 149 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344443333333333333333333333333333333333333333333333333333333333
No 134
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.91 E-value=1.5 Score=34.78 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5037 18 TEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQ 59 (224)
Q Consensus 18 ~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~ 59 (224)
.++++|.-++..+.....++...+..++.|+..........+
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq 44 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQ 44 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555544444433333
No 135
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.88 E-value=3 Score=38.05 Aligned_cols=157 Identities=16% Similarity=0.173 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy5037 40 EVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNH 119 (224)
Q Consensus 40 E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~ 119 (224)
...|++..-.=..=+.+-+..-+..+...+..|+.....+...+..+.+.+.........|..++..+..-....+.
T Consensus 129 ~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~--- 205 (325)
T PF08317_consen 129 TYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIES--- 205 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---
Confidence 33444444444444444455555555555555555555555555555544444444444444444444333333111
Q ss_pred hhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q psy5037 120 SLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAG----CQETL 195 (224)
Q Consensus 120 ~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~----~re~~ 195 (224)
.-..++..++.++..+...|......+...+.++..+...+..+..+...+..+...+...+.. .....
T Consensus 206 -------~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev 278 (325)
T PF08317_consen 206 -------CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEV 278 (325)
T ss_pred -------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 0122334445555555555555555555555555555555555555555555554444433332 22334
Q ss_pred HHHHHHHHHHH
Q psy5037 196 DTMLRQKEELR 206 (224)
Q Consensus 196 ~kld~~~e~l~ 206 (224)
..|...++.|+
T Consensus 279 ~~Lk~~~~~Le 289 (325)
T PF08317_consen 279 KRLKAKVDALE 289 (325)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 136
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.77 E-value=5.2 Score=40.27 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy5037 17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE 94 (224)
Q Consensus 17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE 94 (224)
+.++--|.-||.++.........+|-.+..+|..-.-.+..+......+.-+...|..+..++..++..+...|....
T Consensus 449 ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k 526 (786)
T PF05483_consen 449 EKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSK 526 (786)
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344455556666666666666666666666666655555666666666666666666666666666666655554443
No 137
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.74 E-value=1.8 Score=34.86 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 98 LDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 98 ~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l 177 (224)
.+|+...+.-..-.+.|...++.+.+++..+......+..+++.++.++.........+..++..+........+++..+
T Consensus 41 ~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 41 YDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666667777777777777777776666666666666666666555555555555555555544444444444
Q ss_pred H
Q psy5037 178 Q 178 (224)
Q Consensus 178 k 178 (224)
+
T Consensus 121 k 121 (151)
T PF11559_consen 121 K 121 (151)
T ss_pred H
Confidence 4
No 138
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.74 E-value=0.4 Score=41.97 Aligned_cols=77 Identities=22% Similarity=0.312 Sum_probs=51.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy5037 48 LYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGE 124 (224)
Q Consensus 48 L~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e 124 (224)
+.++......+..++++...+.++|-.++...-+++..+.+.|.+++.++..|.+.|+.+-.+..+|..|+..++-.
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 33455555555666666666666666666666666666666677777777777777777777777777777766654
No 139
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.72 E-value=3 Score=37.32 Aligned_cols=52 Identities=29% Similarity=0.335 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 155 SLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELR 206 (224)
Q Consensus 155 ~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~ 206 (224)
..+..+..+..-..+++..+..|......+..-+..+.....++...+..+.
T Consensus 166 ~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 166 ALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3344444444444444555555555444444444444444444444444444
No 140
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.58 E-value=0.81 Score=41.72 Aligned_cols=8 Identities=13% Similarity=-0.039 Sum_probs=3.0
Q ss_pred hhhhhhhH
Q psy5037 125 MKSCKNLL 132 (224)
Q Consensus 125 ~nel~le~ 132 (224)
.|.+.+++
T Consensus 101 ~n~~~~~l 108 (314)
T PF04111_consen 101 YNELQLEL 108 (314)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 141
>PF13514 AAA_27: AAA domain
Probab=94.56 E-value=7.4 Score=41.17 Aligned_cols=32 Identities=31% Similarity=0.343 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037 68 EAEDVKLQLQHYCCEVQRIEEILSKKESERLD 99 (224)
Q Consensus 68 eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~ 99 (224)
.+..+..++..+..++..+...+.....++..
T Consensus 802 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ 833 (1111)
T PF13514_consen 802 ERERLQEQLEELEEELEQAEEELEELEAELAE 833 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555
No 142
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.56 E-value=5.1 Score=39.30 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 31 ELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRI 86 (224)
Q Consensus 31 r~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rl 86 (224)
....+.+...+..+=+.|+.-..-...+...+.....-+..++...+.+..++.++
T Consensus 277 ~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v 332 (560)
T PF06160_consen 277 EEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERV 332 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444455555555555555555555555555555
No 143
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=94.50 E-value=7.5 Score=40.98 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=11.5
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHH
Q psy5037 139 VMKLEALVQDKDCSIKSLEAKLEEL 163 (224)
Q Consensus 139 i~~le~~I~e~~~~i~~~e~qL~~l 163 (224)
+..+...|..+...+......+..+
T Consensus 779 ~~~l~~~i~~~~~~~~~~~~~~~~~ 803 (1047)
T PRK10246 779 LTQLEQLKQNLENQRQQAQTLVTQT 803 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 144
>KOG0994|consensus
Probab=94.50 E-value=8 Score=41.29 Aligned_cols=53 Identities=11% Similarity=0.081 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEEL 188 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL 188 (224)
+++...|=..-..+...++.++........++.....+|..|..+-.++..++
T Consensus 1695 ~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1695 RTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333444444444555555555555555555555555555555555544444
No 145
>PRK11281 hypothetical protein; Provisional
Probab=94.50 E-value=7.9 Score=41.22 Aligned_cols=43 Identities=7% Similarity=0.213 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037 57 TIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD 99 (224)
Q Consensus 57 ~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~ 99 (224)
.++..+.+....+.+....+..|.+.+..+.....+.-....+
T Consensus 125 qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lse 167 (1113)
T PRK11281 125 QLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYA 167 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 3666666666666666777777766666665555544444444
No 146
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=94.48 E-value=2.3 Score=39.63 Aligned_cols=132 Identities=12% Similarity=0.262 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy5037 42 RRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSL 121 (224)
Q Consensus 42 ~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~l 121 (224)
+-+...|+.|..-...+..-+.+....++-|-..+..+...|..-|.-|+ .....+..+|+.+...+..+..++.++
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN---~qle~l~~eYr~~~~~ls~~~~~y~~~ 292 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN---NQLEPLIQEYRSAQDELSEVQEKYKQA 292 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777766666666666655555555444444443333333332 234448888999999999999999999
Q ss_pred hhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 122 DGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 122 E~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l 177 (224)
.+-+++...++..+-+.....+.+|.+..+.+..- +-+-..+.++..|..|++++
T Consensus 293 s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~-sPlv~IKqAl~kLk~EI~qM 347 (359)
T PF10498_consen 293 SEGVSERTRELAEISEELEQVKQEMEERGSSMTDG-SPLVKIKQALTKLKQEIKQM 347 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHHHHHh
Confidence 88888888888777777777777777776666554 55556666666666666654
No 147
>KOG0962|consensus
Probab=94.47 E-value=8.4 Score=41.39 Aligned_cols=177 Identities=16% Similarity=0.200 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy5037 27 LNNLELERNRAQSEVRRLQTELYDM---NQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKH 103 (224)
Q Consensus 27 l~~lr~~r~~a~~E~~rlq~dL~~~---~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~ 103 (224)
||+++.-+-+...++..++..|.-+ ..+-..+..-|......+...+.++..+..+|..+...|..+.....+
T Consensus 187 ld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~e---- 262 (1294)
T KOG0962|consen 187 LDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKE---- 262 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence 4446677777777777777665533 334444555555555666666666666666665555555544433322
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhH--------hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 104 LKFISQETAELENNNHSLDGEMKSCKNLL--------AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQ 175 (224)
Q Consensus 104 ~~~l~~e~~~lE~r~~~lE~e~nel~le~--------~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~ 175 (224)
|+.+-.++..+++.-.++.-+++.+.... ..+.+-..................+..++.+......+-....
T Consensus 263 l~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~ 342 (1294)
T KOG0962|consen 263 LEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKT 342 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333333333333333333333222 1222333333334444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 176 CCQEEKYRLGEELAGCQETLDTMLRQKEELRL 207 (224)
Q Consensus 176 ~lk~er~~l~~dL~~~re~~~kld~~~e~l~~ 207 (224)
.+-.+-..++........+.+..++-.+.+..
T Consensus 343 ~~~~~~~~lq~e~~~~~~l~~~~~~~~~~~~~ 374 (1294)
T KOG0962|consen 343 ELDLEQSELQAEAEFHQELKRQRDSLIQELAH 374 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555554433
No 148
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=94.47 E-value=3.1 Score=36.34 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 98 LDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 98 ~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l 177 (224)
..+..+|..+...+..|+.+...+=.--++ .|- ..+-.++.+++..+..+...+.....+...++..+..|+..+.++
T Consensus 55 k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E-~LA-r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~ 132 (225)
T COG1842 55 KQLERKLEEAQARAEKLEEKAELALQAGNE-DLA-REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAEL 132 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666777777776655433331 111 234678888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy5037 178 QEEKYRLGEELAGCQ 192 (224)
Q Consensus 178 k~er~~l~~dL~~~r 192 (224)
+..+..+.......+
T Consensus 133 ~~~~~~l~ar~~~ak 147 (225)
T COG1842 133 RAKKEALKARKAAAK 147 (225)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988888877665543
No 149
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.45 E-value=3.1 Score=36.37 Aligned_cols=87 Identities=14% Similarity=0.214 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5037 41 VRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHS 120 (224)
Q Consensus 41 ~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~ 120 (224)
+..+..++.....++..+...+.....++...+..+......+......+................+...+..+..++..
T Consensus 58 ~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 137 (302)
T PF10186_consen 58 IQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQ 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444433333333444444444444444444444
Q ss_pred hhhhhhh
Q psy5037 121 LDGEMKS 127 (224)
Q Consensus 121 lE~e~ne 127 (224)
+...+..
T Consensus 138 l~~~l~~ 144 (302)
T PF10186_consen 138 LQSQLAR 144 (302)
T ss_pred HHHHHHH
Confidence 4444333
No 150
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.44 E-value=3.9 Score=37.39 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037 55 NMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSK 92 (224)
Q Consensus 55 ~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~ 92 (224)
.+-++.-.+.+..-++.|+.....+...+..+.+.+..
T Consensus 139 ~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~ 176 (312)
T smart00787 139 MKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPK 176 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433333
No 151
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.43 E-value=6.2 Score=39.73 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhH-HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 135 SEKKVMKLEALVQDK-DCSIKSLEAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 135 ~~~ri~~le~~I~e~-~~~i~~~e~qL~~l~~~~~~lE~EL~~l 177 (224)
++.+++.++..|..- ...+.+...++......+..|...+..+
T Consensus 321 l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~ 364 (754)
T TIGR01005 321 AKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQL 364 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444331 1222333344444444444444444444
No 152
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=94.41 E-value=0.91 Score=32.43 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=56.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy5037 149 KDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADT 212 (224)
Q Consensus 149 ~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~ 212 (224)
.+..+.++...+..+...++..+.+++.|..+|+....-|..+-..|.+|...++.+..+|...
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778888888889999999999999999999999999999999999999999999987654
No 153
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.38 E-value=6.4 Score=39.66 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=52.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q psy5037 83 VQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEE 162 (224)
Q Consensus 83 ~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~ 162 (224)
+..+...+...+.+..+|...|..-+-.+..+..++.+++..+... +..=+.++...+........+++.++..
T Consensus 290 i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e------~~~~~~~~~~~~~~a~~~~~~L~~~l~~ 363 (754)
T TIGR01005 290 IQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSE------LQKITKSLLMQADAAQARESQLVSDVNQ 363 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555555444444444444444444443321 1111233334444444444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 163 LSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQ 208 (224)
Q Consensus 163 l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~q 208 (224)
++..+..+-.. ..+-..|..+....+.....+-.+.+.+..+
T Consensus 364 ~~~~~~~~~~~----~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~ 405 (754)
T TIGR01005 364 LKAASAQAGEQ----QVDLDALQRDAAAKRQLYESYLTNYRQAASR 405 (754)
T ss_pred HHHHHHhCcHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55444443222 2233335555555555555555555554443
No 154
>PRK11281 hypothetical protein; Provisional
Probab=94.35 E-value=8.6 Score=40.99 Aligned_cols=10 Identities=20% Similarity=0.328 Sum_probs=5.4
Q ss_pred HHHHHHHHHH
Q psy5037 23 FKYELNNLEL 32 (224)
Q Consensus 23 lr~ql~~lr~ 32 (224)
++.||+++..
T Consensus 41 iq~~l~~~~~ 50 (1113)
T PRK11281 41 VQAQLDALNK 50 (1113)
T ss_pred HHHHHHHhhc
Confidence 4466665544
No 155
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.30 E-value=2.7 Score=36.81 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q psy5037 58 IQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNL 131 (224)
Q Consensus 58 l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le 131 (224)
...-|.++..+.+.|..+.-.+..++.-|-.+|..+|..+.....+-......+.++.+-+.-+-..+|+++.+
T Consensus 30 ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 30 EEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666666666666666666666666655555555555566655666666666666555
No 156
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=94.28 E-value=0.09 Score=48.17 Aligned_cols=116 Identities=15% Similarity=0.206 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH-------hHHHHHHHHHHHHHHhHHhhH
Q psy5037 81 CEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL-------AESEKKVMKLEALVQDKDCSI 153 (224)
Q Consensus 81 ~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~-------~~~~~ri~~le~~I~e~~~~i 153 (224)
+.+.-+-+++..+|.-...|.+.+..+...+..++++++++.+.+.+..-.+ ..++..+.++...|...-..+
T Consensus 28 GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~l 107 (326)
T PF04582_consen 28 GDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTL 107 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhh
Confidence 4455555666666666666666655555555555555555555555544433 333333333334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 154 KSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLD 196 (224)
Q Consensus 154 ~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~ 196 (224)
......|+.|...+..++..+-.|+.......-.+..+.....
T Consensus 108 s~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~ 150 (326)
T PF04582_consen 108 SDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVK 150 (326)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHH
Confidence 4444444444444444444444444444444444444433333
No 157
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.28 E-value=1.6 Score=39.74 Aligned_cols=87 Identities=24% Similarity=0.323 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5037 30 LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQ 109 (224)
Q Consensus 30 lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~ 109 (224)
+......+..+...+...|..+..+...+..+|...+.+...+...-..|-.+...+.-.+.....++..+..+|+....
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~ 127 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN 127 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555556666665555566666666666666666666666666666666
Q ss_pred HHHHHHh
Q psy5037 110 ETAELEN 116 (224)
Q Consensus 110 e~~~lE~ 116 (224)
.++.|..
T Consensus 128 ~L~~L~k 134 (314)
T PF04111_consen 128 QLDRLRK 134 (314)
T ss_dssp HHHCHHT
T ss_pred HHHHHHh
Confidence 6665543
No 158
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.19 E-value=5.2 Score=37.84 Aligned_cols=155 Identities=15% Similarity=0.181 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy5037 42 RRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSL 121 (224)
Q Consensus 42 ~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~l 121 (224)
-+-+-++..++.--+.+...+..+-.+...+..+.+++-.+-..|-+-...+..+..+|......+..+...+-++...+
T Consensus 133 ~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~ 212 (499)
T COG4372 133 AKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAA 212 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444444445555444444444444444443333
Q ss_pred hhh---hhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 122 DGE---MKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLD 196 (224)
Q Consensus 122 E~e---~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~ 196 (224)
++. +....-........|......|++....|.....+|.+-......+|..+.-+..+-..+...+.+-+++.-
T Consensus 213 q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~ 290 (499)
T COG4372 213 QARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQ 290 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 222222223335556666666666666666666666666666666777777777777777777776666543
No 159
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.08 E-value=5.4 Score=37.70 Aligned_cols=68 Identities=28% Similarity=0.284 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRI 86 (224)
Q Consensus 19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rl 86 (224)
+++-++-||-+++....-+..+.+-...+-+.+..+.+....+-+....++..++...-+--.++.++
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~ 142 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARL 142 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444444444444444444444444444444444444444444433
No 160
>KOG0962|consensus
Probab=94.00 E-value=10 Score=40.71 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=47.0
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 140 MKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLA 210 (224)
Q Consensus 140 ~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~ 210 (224)
..++.++.+....+..+..|+.... ...+.++-..|...+..+......+.-.|-.+.+++..+.++|.
T Consensus 1011 ~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1011 RNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555555556655555 55556667777777777777777777788888888888888877
No 161
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.97 E-value=5 Score=36.87 Aligned_cols=41 Identities=27% Similarity=0.280 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 158 AKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTM 198 (224)
Q Consensus 158 ~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kl 198 (224)
.||+.++.....|+.+++.+-+++..+..+-..-+..|..|
T Consensus 133 ~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RL 173 (319)
T PF09789_consen 133 EQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRL 173 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554444444444433
No 162
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=93.92 E-value=1.4 Score=33.54 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ 178 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk 178 (224)
.+=+..++.++......|..++.++..+.+.+.++..+|..++
T Consensus 62 ~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 62 EEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666677777777777777777777777777777776654
No 163
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.89 E-value=4.7 Score=36.32 Aligned_cols=107 Identities=16% Similarity=0.220 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5037 39 SEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNN 118 (224)
Q Consensus 39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~ 118 (224)
..|..|...++.+..+.+--...|+.+++.+..-+..+.....+.+-|....-.+-..+..|...-++|..++..-|+.+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv 97 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV 97 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence 33444444455555555555555555555555555555555555554444444444444455555566666666666666
Q ss_pred hhhhhhhhhhhhhHhHHHHHHHHHHHH
Q psy5037 119 HSLDGEMKSCKNLLAESEKKVMKLEAL 145 (224)
Q Consensus 119 ~~lE~e~nel~le~~~~~~ri~~le~~ 145 (224)
.-++|.+++.+..++.+...+.-++.+
T Consensus 98 ~~lEgQl~s~Kkqie~Leqelkr~KsE 124 (307)
T PF10481_consen 98 NFLEGQLNSCKKQIEKLEQELKRCKSE 124 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655444444433333333
No 164
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.83 E-value=0.017 Score=57.91 Aligned_cols=54 Identities=37% Similarity=0.424 Sum_probs=0.0
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 142 LEALVQDKDCSIKSLEAKLEELSHVT-------AQLETQVQCCQEEKYRLGEELAGCQETL 195 (224)
Q Consensus 142 le~~I~e~~~~i~~~e~qL~~l~~~~-------~~lE~EL~~lk~er~~l~~dL~~~re~~ 195 (224)
+...+..+...|..++..+....... ..|.+.+..+..++..+..+...+++.+
T Consensus 361 ~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~ 421 (713)
T PF05622_consen 361 LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETN 421 (713)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333 3333444444444444444444444433
No 165
>KOG0979|consensus
Probab=93.82 E-value=9.9 Score=39.82 Aligned_cols=63 Identities=6% Similarity=0.123 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 137 KKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTML 199 (224)
Q Consensus 137 ~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld 199 (224)
+++......+..+...+...=..+......+......+..++......+.++..+++.+..++
T Consensus 290 ~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q 352 (1072)
T KOG0979|consen 290 SKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQ 352 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444444444444444444444444444444444444444333
No 166
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.81 E-value=5.2 Score=36.55 Aligned_cols=54 Identities=24% Similarity=0.257 Sum_probs=27.2
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 142 LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETL 195 (224)
Q Consensus 142 le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~ 195 (224)
++..|......|......++.+...+..+...+.....++..+..++.+++..+
T Consensus 209 lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 209 AKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555555555555555555555555555555555433
No 167
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.72 E-value=1.9 Score=31.11 Aligned_cols=65 Identities=28% Similarity=0.313 Sum_probs=50.1
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 139 VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKE 203 (224)
Q Consensus 139 i~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e 203 (224)
...|+.+|......|..+...++.|...-..+.++-..|+.+...+..+..+.....+.+=+.++
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45678888888888888888888888888888888888888888888777777776666654443
No 168
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.65 E-value=1.9 Score=31.03 Aligned_cols=65 Identities=22% Similarity=0.251 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 26 ELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEIL 90 (224)
Q Consensus 26 ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i 90 (224)
.|+.+..++..|...|..|+..++.+..++..+..+...+..+...++.....+...+..+=+.|
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667777777777777777777777777777777777777777777766666666555544443
No 169
>KOG0243|consensus
Probab=93.64 E-value=9.4 Score=40.16 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=83.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 14 KLATTEIDRFKYELNNLELERNRAQSEVRR---------LQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQ 84 (224)
Q Consensus 14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~r---------lq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~ 84 (224)
|-...||.+|++-|.++|.+......+=+- ....|..+..+++.+...|.....-.-.+...-..+..+..
T Consensus 407 Kd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~ 486 (1041)
T KOG0243|consen 407 KDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKE 486 (1041)
T ss_pred HHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455689999999999987766554444433 33334444444444444444444444333333337778888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH----------HHHhhhhhhhhhhhhhhhhHhHHHH-------HHHHHHHHHH
Q psy5037 85 RIEEILSKKESERLDLLKHLKFISQETA----------ELENNNHSLDGEMKSCKNLLAESEK-------KVMKLEALVQ 147 (224)
Q Consensus 85 rlE~~i~~kE~E~~~Lle~~~~l~~e~~----------~lE~r~~~lE~e~nel~le~~~~~~-------ri~~le~~I~ 147 (224)
+++..|.....+...+..+|..+...+. ..|..+.+. ...++.....+.. ++....+--.
T Consensus 487 ~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~---a~~l~~~~~~s~~d~s~l~~kld~~~~~~d 563 (1041)
T KOG0243|consen 487 KLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDR---ATKLRRSLEESQDDLSSLFEKLDRKDRLDD 563 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 8888888888888887777777766632 223333333 3444444433333 3334444444
Q ss_pred hHHhhHHHHHHHHHHH
Q psy5037 148 DKDCSIKSLEAKLEEL 163 (224)
Q Consensus 148 e~~~~i~~~e~qL~~l 163 (224)
.+...|..+.+++...
T Consensus 564 ~n~~~~~~~~~~l~~~ 579 (1041)
T KOG0243|consen 564 DNQEVIDDFQSQLSEN 579 (1041)
T ss_pred ccHHHHHHHhhhhhHH
Confidence 5556666666655443
No 170
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.58 E-value=4.8 Score=35.42 Aligned_cols=109 Identities=26% Similarity=0.321 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5037 30 LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQ 109 (224)
Q Consensus 30 lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~ 109 (224)
+..+.-.+..++.+.+..|.........|..+....+.+...|.........++.+|.........++..|-.++..+..
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~ 89 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA 89 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666676777777777777777777777777777777777777777766666666667777777777
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhHhHHHHH
Q psy5037 110 ETAELENNNHSLDGEMKSCKNLLAESEKK 138 (224)
Q Consensus 110 e~~~lE~r~~~lE~e~nel~le~~~~~~r 138 (224)
.+..++.-....+.+...++-++..++..
T Consensus 90 ~i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 90 EIARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666666666666666555443
No 171
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.42 E-value=1.8 Score=31.77 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037 27 LNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEAS 65 (224)
Q Consensus 27 l~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~ 65 (224)
|+.+..++..|...|.-||..+++....+..+..+....
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~ 44 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA 44 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777777777766653
No 172
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=93.40 E-value=3.9 Score=33.85 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHhh
Q psy5037 39 SEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQ-ETAELENN 117 (224)
Q Consensus 39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~-e~~~lE~r 117 (224)
+-+..+..-...+-.-......+.+....++.+++.++..++.+|+.++..--..-....++...|..-++ ++...=..
T Consensus 6 ~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~ 85 (159)
T PF05384_consen 6 KTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEE 85 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHH
Confidence 33445555555666666777888999999999999999999999999988877777777777888876543 34444445
Q ss_pred hhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 118 NHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRL 184 (224)
Q Consensus 118 ~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l 184 (224)
++++--.+.-++-.-..++.|=+.|+..+......|+-.+.-++...-.+.=|.+.|.++-...+.+
T Consensus 86 A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~ 152 (159)
T PF05384_consen 86 AHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDA 152 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555555555556677777888888888888888777777777777777777777766544433
No 173
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.37 E-value=5.1 Score=35.03 Aligned_cols=76 Identities=9% Similarity=0.230 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 105 KFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEE 180 (224)
Q Consensus 105 ~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~e 180 (224)
..+..++.....++..+...+..++..+...+.++..+...+......+..+..........+..+...+...+..
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQR 134 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444433333333333333333333333333
No 174
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=93.31 E-value=2 Score=42.50 Aligned_cols=92 Identities=22% Similarity=0.367 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHH
Q psy5037 76 LQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKS 155 (224)
Q Consensus 76 ~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~ 155 (224)
...|..++..++..+..++.++..|...+..+..++..|++++..+.-+.- -..-...+|......|..
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-----------~~~~~~rei~~~~~~I~~ 485 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-----------DKVRKDREIRARDRRIER 485 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhhHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555554444444433322 112234455555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 156 LEAKLEELSHVTAQLETQVQCCQ 178 (224)
Q Consensus 156 ~e~qL~~l~~~~~~lE~EL~~lk 178 (224)
++..|.+....+..|+..|..++
T Consensus 486 L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 486 LEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666655
No 175
>PRK09343 prefoldin subunit beta; Provisional
Probab=93.13 E-value=2.8 Score=32.95 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179 (224)
Q Consensus 135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~ 179 (224)
..+=+..+..++.-+...|..++.+...+.+.+.+++..|+.+-.
T Consensus 69 ~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 69 KTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567777777777888888888888888888888888877643
No 176
>KOG0946|consensus
Probab=93.08 E-value=12 Score=38.51 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLET 172 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~ 172 (224)
.....+..++..++..++..|..+-..+++....+..+..
T Consensus 802 ~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~ 841 (970)
T KOG0946|consen 802 SEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGS 841 (970)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhc
Confidence 3334444445555555555555444444444444444443
No 177
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.96 E-value=13 Score=38.53 Aligned_cols=114 Identities=26% Similarity=0.344 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHh----HHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQD----KDCSIKSLEAKLEELSHVTAQLETQVQ 175 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e----~~~~i~~~e~qL~~l~~~~~~lE~EL~ 175 (224)
+..+...+...+..|..++..+...+..+.-....+..........+.. ....+..|+..+...-.....+...+.
T Consensus 313 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~ 392 (908)
T COG0419 313 LLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQ 392 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443332222222222222 222233333333333334444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q psy5037 176 CCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTE 213 (224)
Q Consensus 176 ~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~ 213 (224)
.+..+...+...+..+...+.++...+..+...+....
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~ 430 (908)
T COG0419 393 ELKEELAELSAALEEIQEELEELEKELEELERELEELE 430 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555554444433
No 178
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.96 E-value=2 Score=42.50 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy5037 63 EASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQE 110 (224)
Q Consensus 63 e~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e 110 (224)
.....++..+...++.+..+++.|+..+..+.+++..|..++..+..+
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444444333
No 179
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=92.91 E-value=12 Score=37.88 Aligned_cols=183 Identities=17% Similarity=0.245 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q psy5037 18 TEIDRFKYELNN-------LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQH-------YCCEV 83 (224)
Q Consensus 18 ~e~~~lr~ql~~-------lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~-------~~~E~ 83 (224)
.-+..|+.+|.. +...-..+.-++..+.-+.+.+.-+...+...|..+...-+.|-.+++. ++.++
T Consensus 471 kQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrnel 550 (786)
T PF05483_consen 471 KQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNEL 550 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555553 3444445556666666666666666666666666555544444443333 33444
Q ss_pred HHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhH-------HHHHHHHHHHHHHhHHhh
Q psy5037 84 QRIEEILSKKESERLDL----LKHLKFISQETAELENNNHSLDGEMKSCKNLLAE-------SEKKVMKLEALVQDKDCS 152 (224)
Q Consensus 84 ~rlE~~i~~kE~E~~~L----le~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~-------~~~ri~~le~~I~e~~~~ 152 (224)
..+...+..+..+.... -+.++++..++...+..+.-+++.+|.++...+. ++..+..|...|.--...
T Consensus 551 es~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq 630 (786)
T PF05483_consen 551 ESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQ 630 (786)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444432 2345666666666677777777777777665533 333444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 153 IKSLEAKLEELSHVTAQLETQVQCCQE----EKYRLGEELAGCQETLDTMLRQKEELRL 207 (224)
Q Consensus 153 i~~~e~qL~~l~~~~~~lE~EL~~lk~----er~~l~~dL~~~re~~~kld~~~e~l~~ 207 (224)
...|+.. |..|..++..++. +-..+..+|.+-.-.-..|...++++..
T Consensus 631 ~~~~eik-------Vn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~ 682 (786)
T PF05483_consen 631 SNVYEIK-------VNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKL 682 (786)
T ss_pred HHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4444443 4444444444433 3344555555555555555555555543
No 180
>PRK10698 phage shock protein PspA; Provisional
Probab=92.91 E-value=5.8 Score=34.39 Aligned_cols=105 Identities=11% Similarity=0.122 Sum_probs=70.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q psy5037 87 EEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHV 166 (224)
Q Consensus 87 E~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~ 166 (224)
...+...-.....+..++..+...+..|+.+..-+=..=++ -|-+..+ .++......+..+...+.....++..|...
T Consensus 44 r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~E-dLAr~AL-~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~ 121 (222)
T PRK10698 44 RSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKE-DLARAAL-IEKQKLTDLIATLEHEVTLVDETLARMKKE 121 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444456666777777888888887766544322 2333333 445556677788888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 167 TAQLETQVQCCQEEKYRLGEELAGCQE 193 (224)
Q Consensus 167 ~~~lE~EL~~lk~er~~l~~dL~~~re 193 (224)
+..|+..|..++..+..|..-...++.
T Consensus 122 l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 122 IGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888776666554
No 181
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=92.73 E-value=9.2 Score=36.28 Aligned_cols=25 Identities=8% Similarity=0.186 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHH
Q psy5037 190 GCQETLDTMLRQKEELRLQLADTEN 214 (224)
Q Consensus 190 ~~re~~~kld~~~e~l~~qL~~~~~ 214 (224)
.+....+.+...+..+..++.....
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544433
No 182
>KOG1029|consensus
Probab=92.72 E-value=13 Score=38.12 Aligned_cols=120 Identities=23% Similarity=0.264 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH-
Q psy5037 57 TIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD---LLKHLKFISQETAELENNNHSLDGEMKSCKNLL- 132 (224)
Q Consensus 57 ~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~---Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~- 132 (224)
.-.++|+..++...+|+.+++-- =|-+|....+..+..+-.. +..+...++-++.-|-.+++.|++.+-..+..+
T Consensus 390 erkkeie~rEaar~ElEkqRqle-wErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~t 468 (1118)
T KOG1029|consen 390 ERKKEIERREAAREELEKQRQLE-WERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDIT 468 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccc
Confidence 34556777777777877776533 3344556666666666555 666666677777777777777776666666555
Q ss_pred ------hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 133 ------AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 133 ------~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l 177 (224)
.+......-...+|.++...|++|...+-.|.-.-..|...|+..
T Consensus 469 t~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~ 519 (1118)
T KOG1029|consen 469 TQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQK 519 (1118)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 333333333444555555555555555555544444555554443
No 183
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=92.56 E-value=6.5 Score=34.11 Aligned_cols=167 Identities=19% Similarity=0.197 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQH------------NMTIQQELEASRTEAEDVKLQLQHYCCEVQRI 86 (224)
Q Consensus 19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e------------~~~l~~ele~~e~eleeLk~~~~~~~~E~~rl 86 (224)
++...+...+.+......+-.+++.++..|...... ...|+..|......+.+....+..+.+.+..+
T Consensus 32 ~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~ 111 (240)
T PF12795_consen 32 EIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEI 111 (240)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555555555443 34444455555555555555555555555555
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q psy5037 87 EEILSKKESERLDLLKHLKFISQETAELENN--NHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELS 164 (224)
Q Consensus 87 E~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r--~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~ 164 (224)
.......-..+.+...+...+...+..+-+. -.-.++....+..++..+.-++.-++.....+-....-|..++.-+.
T Consensus 112 ~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~ 191 (240)
T PF12795_consen 112 QTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLK 191 (240)
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 4444444444444444444443333322110 11112333334444455677777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5037 165 HVTAQLETQVQCCQEEKYRLG 185 (224)
Q Consensus 165 ~~~~~lE~EL~~lk~er~~l~ 185 (224)
..+..++..+..|++-.....
T Consensus 192 ~~~~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 192 ARIQRLQQQLQALQNLLNQKR 212 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776555444
No 184
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.54 E-value=5.2 Score=33.03 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Q psy5037 184 LGEELAGCQETLDTMLRQKEELRLQLADTEN 214 (224)
Q Consensus 184 l~~dL~~~re~~~kld~~~e~l~~qL~~~~~ 214 (224)
+..|+..+.+....+...+..+.+.+..+..
T Consensus 143 ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~ 173 (177)
T PF13870_consen 143 LLRDYDKTKEEVEELRKEIKELERKVEILEM 173 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666555554443
No 185
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=92.26 E-value=7.5 Score=34.16 Aligned_cols=64 Identities=11% Similarity=0.228 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYC 80 (224)
Q Consensus 17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~ 80 (224)
+.++.+|-..++++..+-..+......+....+.+....+.+...|......+.++-.++..|.
T Consensus 51 e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~ 114 (264)
T PF06008_consen 51 EKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLN 114 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3334444444444444444444444444444444444444444444444444444444444333
No 186
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=92.09 E-value=3.6 Score=30.16 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5037 43 RLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHS 120 (224)
Q Consensus 43 rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~ 120 (224)
|+.+-|+.+..+...+..++.......++++.++..-++||..+...+..++..-..|..+| .++|.+|-..+++
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr~eLe~ 75 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 46677888888888888888899999999999999999999999999999999999998888 4566665554443
No 187
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.08 E-value=10 Score=35.34 Aligned_cols=128 Identities=17% Similarity=0.227 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy5037 19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMT----IQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE 94 (224)
Q Consensus 19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~----l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE 94 (224)
-+..++...+.+...-.++.....+++.++......+.. |+..++..-.+......++.........+.+-++.+.
T Consensus 221 hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t 300 (359)
T PF10498_consen 221 HLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERT 300 (359)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 355666666667777777777777777766555544443 4444444444444444444444444444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHH
Q psy5037 95 SERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIK 154 (224)
Q Consensus 95 ~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~ 154 (224)
.+...++++++.+..++++-.+.+-+ --++-.++.-+..|+.+|.+..-.|.
T Consensus 301 ~~L~~IseeLe~vK~emeerg~~mtD--------~sPlv~IKqAl~kLk~EI~qMdvrIG 352 (359)
T PF10498_consen 301 RELAEISEELEQVKQEMEERGSSMTD--------GSPLVKIKQALTKLKQEIKQMDVRIG 352 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC--------CCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 55555555555555555444444333 24444455555666666665554443
No 188
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.91 E-value=11 Score=35.25 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 183 RLGEELAGCQETLDTMLRQKEELR 206 (224)
Q Consensus 183 ~l~~dL~~~re~~~kld~~~e~l~ 206 (224)
.|..++...+.....+-.+.+...
T Consensus 346 ~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 346 VLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544444444433
No 189
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.86 E-value=3 Score=36.64 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy5037 44 LQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDG 123 (224)
Q Consensus 44 lq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~ 123 (224)
+..+..++....+.+..+-+.+-.++++++.+...+..++.+++...+.++.....|...+..|..-.+.|+.....++.
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~ 212 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEE 212 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHH
Confidence 33444444444444444444555555555555555555555555555555555555555555555555555555544443
Q ss_pred h
Q psy5037 124 E 124 (224)
Q Consensus 124 e 124 (224)
.
T Consensus 213 ~ 213 (290)
T COG4026 213 E 213 (290)
T ss_pred H
Confidence 3
No 190
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=5.5 Score=31.53 Aligned_cols=88 Identities=19% Similarity=0.251 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHH----------------HHHHHHHHHHHHhHHhhHHHHHHH
Q psy5037 96 ERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAES----------------EKKVMKLEALVQDKDCSIKSLEAK 159 (224)
Q Consensus 96 E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~----------------~~ri~~le~~I~e~~~~i~~~e~q 159 (224)
+...++.+|..+..++..+--+..+++..+++...-+..+ ==+ .+...-+.+....++.++..
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk-~~k~~~~~eL~er~E~Le~r 85 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVK-VSKEEAVDELEERKETLELR 85 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhh-hhHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777776666666666666655544221 000 13444445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 160 LEELSHVTAQLETQVQCCQEEKYRL 184 (224)
Q Consensus 160 L~~l~~~~~~lE~EL~~lk~er~~l 184 (224)
+..+.+.+..+.++|..++.....+
T Consensus 86 i~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 86 IKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666655554443
No 191
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=91.65 E-value=5.8 Score=36.18 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 103 HLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKY 182 (224)
Q Consensus 103 ~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~ 182 (224)
-++.+...+..+|.+++.+=.-.+-|-.++..+.=.|..|...+.+.+..+-.+...+.++......+...+..++.++.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~ 157 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD 157 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666655555555444444444444444444444444444444444444433333344444444444
Q ss_pred HHHHHH
Q psy5037 183 RLGEEL 188 (224)
Q Consensus 183 ~l~~dL 188 (224)
.++..|
T Consensus 158 ~Lre~L 163 (302)
T PF09738_consen 158 ELREQL 163 (302)
T ss_pred HHHHHH
Confidence 443333
No 192
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.59 E-value=16 Score=36.43 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=5.1
Q ss_pred HhhHHHHHHHHHHH
Q psy5037 150 DCSIKSLEAKLEEL 163 (224)
Q Consensus 150 ~~~i~~~e~qL~~l 163 (224)
...+...+.+|..+
T Consensus 397 ~~~~~~~e~el~~l 410 (650)
T TIGR03185 397 LKELRELEEELAEV 410 (650)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 193
>KOG0979|consensus
Probab=91.46 E-value=21 Score=37.58 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~ 179 (224)
|.+.+.-+..-...||+..+++.++++....++-.+..++...-..+......+.....++..+..+.......+...+.
T Consensus 267 l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k 346 (1072)
T KOG0979|consen 267 LEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKK 346 (1072)
T ss_pred HHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444445555555555566665555555545555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHH
Q psy5037 180 EKYRLGEELA 189 (224)
Q Consensus 180 er~~l~~dL~ 189 (224)
....++..|.
T Consensus 347 ~i~~~q~el~ 356 (1072)
T KOG0979|consen 347 MILDAQAELQ 356 (1072)
T ss_pred HHHHHHhhhh
Confidence 5555554443
No 194
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.42 E-value=13 Score=35.30 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q psy5037 135 SEKKVMKLEALV 146 (224)
Q Consensus 135 ~~~ri~~le~~I 146 (224)
++.+++.++..+
T Consensus 280 l~~qi~~l~~~l 291 (498)
T TIGR03007 280 TKREIAQLEEQK 291 (498)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 195
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=91.37 E-value=4.1 Score=30.18 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQC 176 (224)
Q Consensus 135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~ 176 (224)
..+=+..++..+......|..++.++..+...+..++..|..
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566677777777777777777777777777777766654
No 196
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=91.22 E-value=16 Score=35.78 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=26.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 13 AKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQ 53 (224)
Q Consensus 13 ~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~ 53 (224)
...+-.+...++++|..+........+++..++..++++..
T Consensus 163 ~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 163 YRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE 203 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 34445666666777777766667777777777776666654
No 197
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.17 E-value=12 Score=34.28 Aligned_cols=173 Identities=18% Similarity=0.216 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy5037 28 NNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFI 107 (224)
Q Consensus 28 ~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l 107 (224)
+.+......+.++++.|...++....++..|..++..+...-..|......--.=| -..|+..++.+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~i-------------sN~LlKkl~~l 89 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFI-------------SNTLLKKLQQL 89 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH
Confidence 55777788888888888888888888888888888887777666655443221111 01134444444
Q ss_pred HHHHHHHHhhhhhh-hhhhhhhhhhHhHHHHHHHHHHHHHHh-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 108 SQETAELENNNHSL-DGEMKSCKNLLAESEKKVMKLEALVQD-KDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLG 185 (224)
Q Consensus 108 ~~e~~~lE~r~~~l-E~e~nel~le~~~~~~ri~~le~~I~e-~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~ 185 (224)
..+-..|=..+..= ++--|.+..-+..++..+..++..+.. .+..+.-+..+|..|..........|..|+.++..+.
T Consensus 90 ~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlE 169 (310)
T PF09755_consen 90 KKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLE 169 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Confidence 44433332222211 222244444444455555555555543 4455566666666666666666666667777777766
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhchH
Q psy5037 186 EELAGCQET-LDTMLRQKEELRLQLADTE 213 (224)
Q Consensus 186 ~dL~~~re~-~~kld~~~e~l~~qL~~~~ 213 (224)
..|..-.+. ..+|..+++.|...--.+.
T Consensus 170 n~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq 198 (310)
T PF09755_consen 170 NTLEQEQEALVNRLWKQMDKLEAEKRRLQ 198 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554433 3344555554444433333
No 198
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.15 E-value=19 Score=36.49 Aligned_cols=181 Identities=18% Similarity=0.223 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------HHHHHH
Q psy5037 36 RAQSEVRRLQTELYDMNQHN-------MTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSK----------KESERL 98 (224)
Q Consensus 36 ~a~~E~~rlq~dL~~~~~e~-------~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~----------kE~E~~ 98 (224)
.+...+..|+.+|..+.... ..+..+-+.+...+..+...+..-++-|..+..-|.. -+.|+.
T Consensus 166 sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~ 245 (739)
T PF07111_consen 166 SLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPERE 245 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHH
Confidence 33344444444444444433 3333344444444444444444444444444444422 245666
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH----------------------------------------------
Q psy5037 99 DLLKHLKFISQETAELENNNHSLDGEMKSCKNLL---------------------------------------------- 132 (224)
Q Consensus 99 ~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~---------------------------------------------- 132 (224)
.|++-...|.++-+.|-..+.-+...++++.-=+
T Consensus 246 ~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQ 325 (739)
T PF07111_consen 246 ELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQ 325 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 6777777777776666666666666655533222
Q ss_pred -hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5037 133 -AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLAD 211 (224)
Q Consensus 133 -~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~ 211 (224)
....+-+..+..+|..++....+...+=+-|...+..=..++.--+-....|..+|..+.+.+..+.........+|..
T Consensus 326 eleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~ 405 (739)
T PF07111_consen 326 ELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKL 405 (739)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112333344444444444444444444444444433333333333334456777777777777777777776666665
Q ss_pred hHHHH
Q psy5037 212 TENYK 216 (224)
Q Consensus 212 ~~~~~ 216 (224)
+....
T Consensus 406 v~eav 410 (739)
T PF07111_consen 406 VSEAV 410 (739)
T ss_pred HHHHH
Confidence 55443
No 199
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=91.12 E-value=6.7 Score=31.30 Aligned_cols=75 Identities=13% Similarity=0.242 Sum_probs=44.2
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy5037 20 IDRFKYELNN----LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE 94 (224)
Q Consensus 20 ~~~lr~ql~~----lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE 94 (224)
.+++-.||++ +..-+..+.+.+.++-..|++...-.+.+..+.......+..+...+..+..-|.-|+..|..++
T Consensus 45 ~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 45 VASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777776 34444455555556666666666655666666666666666666666555555555555555443
No 200
>PF13166 AAA_13: AAA domain
Probab=91.05 E-value=18 Score=36.02 Aligned_cols=143 Identities=15% Similarity=0.202 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHH
Q psy5037 68 EAEDVKLQLQHYCCEVQRIEEILSKKESERLD------LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMK 141 (224)
Q Consensus 68 eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~------Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~ 141 (224)
...++...+..+...+..+...|..+-..... +...+..+..-+..+...+......+..+..++..+...+..
T Consensus 323 ~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~ 402 (712)
T PF13166_consen 323 DKEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWL 402 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433322211 344445555555555555555555555555544444444433
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy5037 142 LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADT 212 (224)
Q Consensus 142 le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~ 212 (224)
+. +..+...|..|...+..+...+..++..+..++.....+..++..++......+..++.++..|..+
T Consensus 403 ~~--~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 403 HL--IAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 21 2344445555555566666666666666666666666666666666666665666666666666554
No 201
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=90.93 E-value=11 Score=33.23 Aligned_cols=83 Identities=10% Similarity=0.185 Sum_probs=47.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy5037 15 LATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE 94 (224)
Q Consensus 15 ~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE 94 (224)
.+..++......++..+.....+..++..|..+++.+..................+.+-...+.+...|..+...|...-
T Consensus 28 ~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~ 107 (264)
T PF06008_consen 28 DLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELI 107 (264)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555556666666666666666666666666666666666666555555555555555555555444443
Q ss_pred HHH
Q psy5037 95 SER 97 (224)
Q Consensus 95 ~E~ 97 (224)
...
T Consensus 108 ~~~ 110 (264)
T PF06008_consen 108 EQV 110 (264)
T ss_pred HHH
Confidence 333
No 202
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=90.86 E-value=17 Score=35.63 Aligned_cols=83 Identities=20% Similarity=0.290 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENY 215 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~ 215 (224)
..++.++...+.+....+.+-+.-.|.+...+..++.-|.....+-..+.+.|.++|+.=.+.....+.+..++-+..-.
T Consensus 353 e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~ 432 (570)
T COG4477 353 EKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRY 432 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777778888888888999999999999999999999999999999998888888888888888776655
Q ss_pred HHh
Q psy5037 216 KTK 218 (224)
Q Consensus 216 ~~~ 218 (224)
+..
T Consensus 433 mek 435 (570)
T COG4477 433 MEK 435 (570)
T ss_pred HHH
Confidence 543
No 203
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.72 E-value=11 Score=32.97 Aligned_cols=60 Identities=18% Similarity=0.297 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy5037 69 AEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSC 128 (224)
Q Consensus 69 leeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel 128 (224)
++.+....+....-=......++....+...|..+|+.+..+++.++..+..++..+.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q 82 (251)
T PF11932_consen 23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQ 82 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555556666666666777777777777777776666666655554
No 204
>KOG4360|consensus
Probab=90.61 E-value=13 Score=36.26 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5037 30 LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQ 109 (224)
Q Consensus 30 lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~ 109 (224)
+........+++.+++..+..+...+-.+..++.....++++|..-++.|+.-=..+.......+....+.+..|+...+
T Consensus 217 ~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Eaee 296 (596)
T KOG4360|consen 217 GQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEE 296 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHH
Q psy5037 110 ETAEL 114 (224)
Q Consensus 110 e~~~l 114 (224)
++..+
T Consensus 297 ELk~l 301 (596)
T KOG4360|consen 297 ELKCL 301 (596)
T ss_pred HHHhh
Confidence 65544
No 205
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=90.59 E-value=9.8 Score=32.32 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5037 30 LELERNRAQSEVRRLQTELYDM 51 (224)
Q Consensus 30 lr~~r~~a~~E~~rlq~dL~~~ 51 (224)
++.+......+...+...+...
T Consensus 101 lk~~~~~~~e~~k~le~~~~~~ 122 (190)
T PF05266_consen 101 LKDDQEKLLEERKKLEKKIEEK 122 (190)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555544
No 206
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.49 E-value=5.6 Score=34.25 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 93 KESERLDLLKHLKFISQETAELEN 116 (224)
Q Consensus 93 kE~E~~~Lle~~~~l~~e~~~lE~ 116 (224)
+..++..|..++..+..+++.++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 207
>KOG1937|consensus
Probab=90.49 E-value=17 Score=34.98 Aligned_cols=160 Identities=14% Similarity=0.142 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 39 SEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKL--QLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELEN 116 (224)
Q Consensus 39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~--~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~ 116 (224)
..++.+..+|..+..+++.-...-..+..+++.+-. .+..|...+..+-+-|-..+..+..+++.-+.|..+.+++-.
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se 424 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESE 424 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333333333333333322 244555566666666666666666666666666666655554
Q ss_pred hhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHH-------HHHHHHHHHHHHHH--HH---HHHHHH
Q psy5037 117 NNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEE-------LSHVTAQLETQVQC--CQ---EEKYRL 184 (224)
Q Consensus 117 r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~-------l~~~~~~lE~EL~~--lk---~er~~l 184 (224)
+++--=+-.- ++--..-+...+=+..=.+.+.|+.+=++|.+ +++.+..+|.++-. .+ ---+.+
T Consensus 425 ~L~Rsfavtd----ellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l~slEkl 500 (521)
T KOG1937|consen 425 ALNRSFAVTD----ELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYLKSLEKL 500 (521)
T ss_pred HHhhhHHHHH----HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHHhhHHHH
Confidence 4443221111 22112333344444444555666666666654 34555555555443 11 123457
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5037 185 GEELAGCQETLDTMLRQK 202 (224)
Q Consensus 185 ~~dL~~~re~~~kld~~~ 202 (224)
..|+.+.+...+.|.+.+
T Consensus 501 ~~Dyqairqen~~L~~~i 518 (521)
T KOG1937|consen 501 HQDYQAIRQENDQLFSEI 518 (521)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 778888888877776654
No 208
>KOG1003|consensus
Probab=90.47 E-value=11 Score=32.49 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA 189 (224)
Q Consensus 135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~ 189 (224)
+.+.+..+-.++-+.+..-+-.+.....|.+.+-.|+..|...+.+...+..+|.
T Consensus 142 ~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 142 YEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555555444444443
No 209
>KOG4673|consensus
Probab=90.33 E-value=23 Score=36.06 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=33.9
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhchH
Q psy5037 142 LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEEL-AGCQETLDTMLRQKEELRLQLADTE 213 (224)
Q Consensus 142 le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL-~~~re~~~kld~~~e~l~~qL~~~~ 213 (224)
+.+.|.-|.+.....+.-++..+..+..++..+..++.-.+.+..|| ...|-.-+.+...-..+-.|+.++.
T Consensus 521 ~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR 593 (961)
T KOG4673|consen 521 LQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLR 593 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555555555555555555555555554 2333333344444444444444433
No 210
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=90.29 E-value=11 Score=32.45 Aligned_cols=184 Identities=20% Similarity=0.219 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5037 17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESE 96 (224)
Q Consensus 17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E 96 (224)
.-||+-|++||-.+-....-=..+|-.|...|-...+ .+......+..+....+.-..++...+..+.++-.+
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~-------~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~E 81 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRA-------ELRNKESQIQELQDSLRTKQLELEVCENELQRKKNE 81 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCH
Confidence 3589999999987666666656666666555555544 444444444444444444444444555555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh---hhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH----HHHHH
Q psy5037 97 RLDLLKHLKFISQETAELENNNHSL---DGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELS----HVTAQ 169 (224)
Q Consensus 97 ~~~Lle~~~~l~~e~~~lE~r~~~l---E~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~----~~~~~ 169 (224)
..-|.+.+..+..++..|-.....+ ......+ .+...+.-.-..-...+......++.|...|...+ .....
T Consensus 82 a~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l-~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~ 160 (202)
T PF06818_consen 82 AELLREKLGQLEAELAELREELACAGRLKRQCQLL-SESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSS 160 (202)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccc-cccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4444444444444444333333332 0000000 00001110000001112222222222333332222 23346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 170 LETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQ 208 (224)
Q Consensus 170 lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~q 208 (224)
|+.|=+--+++++.+...-.-+..-.+.+=..-..|...
T Consensus 161 Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~ 199 (202)
T PF06818_consen 161 FEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERE 199 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777766666555555554444444443
No 211
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=90.27 E-value=0.83 Score=42.57 Aligned_cols=94 Identities=16% Similarity=0.287 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 39 SEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQL----QHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAEL 114 (224)
Q Consensus 39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~----~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~l 114 (224)
+++..+...+.++..++..+...+.+....+..+.... .++.+.|..+++.|+..+..+.++......+...+..+
T Consensus 98 k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l 177 (370)
T PF02994_consen 98 KELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKL 177 (370)
T ss_dssp --------------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444333 24556666667777777666666666666666666666
Q ss_pred HhhhhhhhhhhhhhhhhH
Q psy5037 115 ENNNHSLDGEMKSCKNLL 132 (224)
Q Consensus 115 E~r~~~lE~e~nel~le~ 132 (224)
+.++.+++..+.--.+-+
T Consensus 178 ~~kl~DlEnrsRRnNiRI 195 (370)
T PF02994_consen 178 EDKLDDLENRSRRNNIRI 195 (370)
T ss_dssp HHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHhhccCCceeE
Confidence 666666666544433433
No 212
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=90.24 E-value=11 Score=32.34 Aligned_cols=101 Identities=9% Similarity=0.058 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy5037 39 SEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQH----YCCEVQR-IEEILSKKESERLDLLKHLKFISQETAE 113 (224)
Q Consensus 39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~----~~~E~~r-lE~~i~~kE~E~~~Lle~~~~l~~e~~~ 113 (224)
..+......+..+...-..++.++......+.++..+... ....+++ +=......+.....|..++..+...+..
T Consensus 38 ~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~ 117 (219)
T TIGR02977 38 DTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAK 117 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555444322 2222222 1112222233344466666666666666
Q ss_pred HHhhhhhhhhhhhhhhhhHhHHHHHH
Q psy5037 114 LENNNHSLDGEMKSCKNLLAESEKKV 139 (224)
Q Consensus 114 lE~r~~~lE~e~nel~le~~~~~~ri 139 (224)
+..+++.++..+..++.....+.-|.
T Consensus 118 l~~~l~~L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 118 LQEDIAKLQAKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665554443333
No 213
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=90.17 E-value=6.3 Score=29.43 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHh
Q psy5037 168 AQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTK 218 (224)
Q Consensus 168 ~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~ 218 (224)
..++.+++.+..+|..|-.+|..+...|.++...-..+...|.+.......
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~ 85 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRA 85 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999887666543
No 214
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=89.87 E-value=8.5 Score=30.48 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 134 ESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEE 180 (224)
Q Consensus 134 ~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~e 180 (224)
++.+-+..+++++......+..+..+|..+...+..+...+..+..+
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777777777777766666665543
No 215
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.83 E-value=11 Score=32.40 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy5037 18 TEIDRFKYELNN 29 (224)
Q Consensus 18 ~e~~~lr~ql~~ 29 (224)
+++..|+.+|+.
T Consensus 100 ~el~~l~~~l~~ 111 (206)
T PRK10884 100 NQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 216
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=89.50 E-value=21 Score=34.58 Aligned_cols=59 Identities=25% Similarity=0.192 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHH
Q psy5037 78 HYCCEVQRIEEILSKKESERLDLL------KHLKFISQETAELENNNHSLDGEMKSCKNLLAESE 136 (224)
Q Consensus 78 ~~~~E~~rlE~~i~~kE~E~~~Ll------e~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~ 136 (224)
.|+.-+..+-..+..++.++..|. .+|-..-....+|...+.-+-...+..+.++..++
T Consensus 177 ~~~~~~~~fl~rtl~~e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 177 NAITAVVEFLKRTLKKEIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYK 241 (511)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444444444555555555544 44555555556666666666666666666664443
No 217
>KOG4643|consensus
Probab=89.44 E-value=31 Score=36.41 Aligned_cols=147 Identities=16% Similarity=0.177 Sum_probs=83.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhh
Q psy5037 47 ELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD---LLKHLKFISQETAELENNNHSLDG 123 (224)
Q Consensus 47 dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~---Lle~~~~l~~e~~~lE~r~~~lE~ 123 (224)
..-.+..+.+.|..+++.++..+.++..+.......-..+--....+..+... -.+.+...+++.+.+=.-.+++.+
T Consensus 402 K~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~ 481 (1195)
T KOG4643|consen 402 KHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEA 481 (1195)
T ss_pred HHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444555566666666666666666666666555555555555555444444 223333445555555555555555
Q ss_pred hhhhhhhhH----hHHHHH---HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 124 EMKSCKNLL----AESEKK---VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQE 193 (224)
Q Consensus 124 e~nel~le~----~~~~~r---i~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re 193 (224)
..++++-.. ..+.++ +..+...+......+..+-.++..+......|+..+..+..++..|...+..+..
T Consensus 482 et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 482 ETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 555555443 112222 2334444555555566666666677777777777777777777777777766665
No 218
>KOG1853|consensus
Probab=89.39 E-value=16 Score=32.85 Aligned_cols=79 Identities=16% Similarity=0.202 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 107 ISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGE 186 (224)
Q Consensus 107 l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~ 186 (224)
+..++..++.++++++++.+-++.+.+...++-.. |-...-+.++.|+.+|.+.+.-++.+..
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~-----------------q~~q~y~q~s~Leddlsqt~aikeql~k 112 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQED-----------------QRVQFYQQESQLEDDLSQTHAIKEQLRK 112 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999988888887776655433 3333334445555555555555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5037 187 ELAGCQETLDTMLRQK 202 (224)
Q Consensus 187 dL~~~re~~~kld~~~ 202 (224)
.+..+...-|-|...+
T Consensus 113 yiReLEQaNDdLErak 128 (333)
T KOG1853|consen 113 YIRELEQANDDLERAK 128 (333)
T ss_pred HHHHHHHhccHHHHhh
Confidence 5555555555554443
No 219
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=89.13 E-value=13 Score=31.47 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy5037 19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERL 98 (224)
Q Consensus 19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~ 98 (224)
....++..++.+......+...+..++..|+........- .+=...-.++.+|+.++.....++..+..- =-..+.
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~---Dp~~i~ 138 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSEN---DPEKIE 138 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHH
Confidence 3444555555555555555555555555555554333222 111222233333333333333333311110 012344
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy5037 99 DLLKHLKFISQETAELENNNHSLDGEMKS 127 (224)
Q Consensus 99 ~Lle~~~~l~~e~~~lE~r~~~lE~e~ne 127 (224)
.+......+...+++|-++|..+.+=+..
T Consensus 139 ~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 139 KLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 57777888888889998888888776554
No 220
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=88.89 E-value=34 Score=36.15 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5037 184 LGEELAGCQETLDTMLRQKEELRLQLAD 211 (224)
Q Consensus 184 l~~dL~~~re~~~kld~~~e~l~~qL~~ 211 (224)
+...+..+...+..+......+..++..
T Consensus 827 l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 854 (1047)
T PRK10246 827 IQQELAQLAQQLRENTTRQGEIRQQLKQ 854 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333
No 221
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=88.68 E-value=24 Score=34.17 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 137 KKVMKLEALVQDKDCSIKSLEAKLEELS--HVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLA 210 (224)
Q Consensus 137 ~ri~~le~~I~e~~~~i~~~e~qL~~l~--~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~ 210 (224)
.-...+..++...+..|.-+..+++... ..-.++|.-|+.+.+--...+..|..+--....|.=+.+++..++-
T Consensus 355 ~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 355 RQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 3344455555555555555555555554 3345666666666655555555555555555555555555555553
No 222
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=88.63 E-value=4.4 Score=30.60 Aligned_cols=64 Identities=25% Similarity=0.379 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037 36 RAQSEVRRLQTELYDMNQHNMTIQQELEASRT---EAEDVKLQLQHYCCEVQRIEEILSKKESERLD 99 (224)
Q Consensus 36 ~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~---eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~ 99 (224)
.+..+.+.++..++.+..+...+.+.|..... +.+.+..+...+..++..++..+...+.++..
T Consensus 33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 33 ELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555544444 34444444444444444444444444444433
No 223
>KOG4673|consensus
Probab=88.51 E-value=31 Score=35.13 Aligned_cols=132 Identities=16% Similarity=0.152 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--------------HHHHHHHHHHHhhhhhhhhhhhhhhhhHhH
Q psy5037 69 AEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHL--------------KFISQETAELENNNHSLDGEMKSCKNLLAE 134 (224)
Q Consensus 69 leeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~--------------~~l~~e~~~lE~r~~~lE~e~nel~le~~~ 134 (224)
++..-..+..+-+|..+++..+..|+.--..+-+-+ ...+.-+..+|.++..+.+-.++++..+.-
T Consensus 490 ~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk 569 (961)
T KOG4673|consen 490 EEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQK 569 (961)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 333334555666777777777777765444433333 334444455555555555555555443311
Q ss_pred HHHHHH--HHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 135 SEKKVM--KLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEE 204 (224)
Q Consensus 135 ~~~ri~--~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~ 204 (224)
.++.. ++..+=+.+-.++..+...|.......+.=|. .++++...|+.-|.++...|..+-.++-.
T Consensus 570 -~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd---~~R~Ei~~LqrRlqaaE~R~eel~q~v~~ 637 (961)
T KOG4673|consen 570 -ENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARRED---MFRGEIEDLQRRLQAAERRCEELIQQVPE 637 (961)
T ss_pred -HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 12221 33333333444444444444444444444443 45678888999999999999887665543
No 224
>PRK10698 phage shock protein PspA; Provisional
Probab=88.40 E-value=16 Score=31.66 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=19.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy5037 14 KLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTI 58 (224)
Q Consensus 14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l 58 (224)
++...=|.-++.+|..++...-.+...-.+++..+..+.......
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~ 71 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEW 71 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444443333
No 225
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=88.01 E-value=4.5 Score=37.13 Aligned_cols=92 Identities=20% Similarity=0.337 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037 23 FKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLK 102 (224)
Q Consensus 23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle 102 (224)
++..+..+......+.......+..|..+...+..+....+....+...++.++......+.+...+++.
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~---------- 288 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISG---------- 288 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh----------
Confidence 4445555444445555555555555555555555555555555555555555555555555555555544
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy5037 103 HLKFISQETAELENNNHSLDGEMKSC 128 (224)
Q Consensus 103 ~~~~l~~e~~~lE~r~~~lE~e~nel 128 (224)
|..+..+|...+.+++.....+
T Consensus 289 ----L~~E~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 289 ----LSGEKERWSEQIEELEEQLKNL 310 (344)
T ss_dssp ----CHHHHHCCHCHHHHHHHHHHHH
T ss_pred ----hcchhhhHHHHHHHHHHHhccc
Confidence 4445555555555555544443
No 226
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=87.91 E-value=20 Score=32.36 Aligned_cols=109 Identities=20% Similarity=0.290 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH
Q psy5037 60 QELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD-------LLKHLKFISQETAELENNNHSLDGEMKSCKNLL 132 (224)
Q Consensus 60 ~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~-------Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~ 132 (224)
.+|.+++..++.|+.+.+.--..|..++..+..--+.... |.-.-++|.+..+.+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~l------------------ 79 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENL------------------ 79 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHH------------------
Confidence 3566677777777777777777777666665544333322 222222222222222
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA 189 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~ 189 (224)
+....-+...+.-.+..+.-++.|++...+.+..|+.+|+.++.+-+..+....
T Consensus 80 ---ek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 80 ---EKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred ---HHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333334444555556666667777777777777777777777776666555444
No 227
>KOG4360|consensus
Probab=87.78 E-value=29 Score=34.00 Aligned_cols=99 Identities=18% Similarity=0.169 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy5037 31 ELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQE 110 (224)
Q Consensus 31 r~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e 110 (224)
-++..++...++.++..|...+.++.....++..+...+.+++.++.-.+-|+..+...+-.--.--+.|+.+.+.+...
T Consensus 204 ~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDk 283 (596)
T KOG4360|consen 204 VKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDK 283 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34445566666677777777777777777777777777777777776666666666655555444444555555555555
Q ss_pred HHHHHhhhhhhhhhhhhhh
Q psy5037 111 TAELENNNHSLDGEMKSCK 129 (224)
Q Consensus 111 ~~~lE~r~~~lE~e~nel~ 129 (224)
.-......|.++.+++.++
T Consensus 284 yAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 284 YAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 5555666666666665543
No 228
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.55 E-value=2.5 Score=27.65 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=34.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037 15 LATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHN 55 (224)
Q Consensus 15 ~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~ 55 (224)
-++++-+.|+.+.|.++..-+.+.++|..|...+....+..
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788899999999999999999999999888887776643
No 229
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.51 E-value=17 Score=30.92 Aligned_cols=79 Identities=20% Similarity=0.309 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLAD 211 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~ 211 (224)
..+.+....++.+|.++......++..|..+...+.+|......+...+.....++..+...|..+......+..+..+
T Consensus 106 ~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 106 EKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666667777766666777777777777777777777777777777777777777777777666666655543
No 230
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.36 E-value=13 Score=29.70 Aligned_cols=66 Identities=12% Similarity=0.215 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 23 FKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEE 88 (224)
Q Consensus 23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~ 88 (224)
|=.+.+.-...++.+...++++..+++.....+..++..++.++.++.............+..+..
T Consensus 43 Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~ 108 (151)
T PF11559_consen 43 LLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEA 108 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555555555555555555544444444444444433333
No 231
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=86.98 E-value=19 Score=35.24 Aligned_cols=91 Identities=14% Similarity=0.223 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHH
Q psy5037 31 ELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESER----LDLLKHLKF 106 (224)
Q Consensus 31 r~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~----~~Lle~~~~ 106 (224)
..+++++..+........-.+..+.+.+...+...+.+...+..++......|.++++.+..-..-. ..|++|+-+
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLas 498 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLAS 498 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4455566666666666666677777777777777777777777777777777777777665543322 225555555
Q ss_pred HHHHHHHHHhhhhhh
Q psy5037 107 ISQETAELENNNHSL 121 (224)
Q Consensus 107 l~~e~~~lE~r~~~l 121 (224)
+.+.+..-.+.|+.+
T Consensus 499 mNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 499 MNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555544444433
No 232
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=86.87 E-value=38 Score=34.37 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHH
Q psy5037 106 FISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLE-TQVQ--CCQEEKY 182 (224)
Q Consensus 106 ~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE-~EL~--~lk~er~ 182 (224)
++..-+..|+..+.++++.......++..+......|...+......+++.-..+..|++=|.+.- .+.+ .-..+|.
T Consensus 166 sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~ 245 (739)
T PF07111_consen 166 SLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPERE 245 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHH
Confidence 444555566666666666655556666667777788888888888888777777888888775554 2222 3457889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q psy5037 183 RLGEELAGCQETLDTMLRQKEELRLQLADTENYK 216 (224)
Q Consensus 183 ~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~ 216 (224)
.|...+..+++..+.|....+.|+..++++....
T Consensus 246 ~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL 279 (739)
T PF07111_consen 246 ELLETVQHLQEDRDALQATAELLQVRVQSLTDIL 279 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987654
No 233
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.73 E-value=33 Score=34.98 Aligned_cols=7 Identities=14% Similarity=0.169 Sum_probs=3.0
Q ss_pred HHHHHHH
Q psy5037 20 IDRFKYE 26 (224)
Q Consensus 20 ~~~lr~q 26 (224)
+..||.+
T Consensus 545 ~~vlree 551 (717)
T PF10168_consen 545 TKVLREE 551 (717)
T ss_pred HHHHHHH
Confidence 3444444
No 234
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=86.29 E-value=7.6 Score=29.76 Aligned_cols=62 Identities=24% Similarity=0.260 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy5037 151 CSIKSLEAKLEELSHVTAQLETQVQCC--QEEKYRLGEELAGCQETLDTMLRQKEELRLQLADT 212 (224)
Q Consensus 151 ~~i~~~e~qL~~l~~~~~~lE~EL~~l--k~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~ 212 (224)
..+......+.....++..+|.++..+ +++-..+.-.+..++-.+..+..+++.+++++.-+
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334444455555666667777777777 77777777777777777777777777777666544
No 235
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=86.25 E-value=20 Score=30.46 Aligned_cols=112 Identities=15% Similarity=0.185 Sum_probs=58.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037 14 KLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTE-AEDVKLQLQHYCCEVQRIEEILSK 92 (224)
Q Consensus 14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~e-leeLk~~~~~~~~E~~rlE~~i~~ 92 (224)
++..+-|..+..+|..++.....+.....+++..++................-.. -++| ...+..+...++..+..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edL---Ar~al~~k~~~e~~~~~ 102 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDL---AREALQRKADLEEQAER 102 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666666666666666655555554443111 1111 12333444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy5037 93 KESERLDLLKHLKFISQETAELENNNHSLDGEMKSC 128 (224)
Q Consensus 93 kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel 128 (224)
.......+..++..|...+..++.++..+......+
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555555554444444443
No 236
>KOG1899|consensus
Probab=86.16 E-value=40 Score=33.97 Aligned_cols=107 Identities=17% Similarity=0.183 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037 23 FKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLK 102 (224)
Q Consensus 23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle 102 (224)
+..-|.-+...++.+.=+++.|.++.+.-...+..|+.=|+.....+..-+..+|.----...+|...-.+=.|+.+|.=
T Consensus 109 yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKL 188 (861)
T KOG1899|consen 109 YQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKL 188 (861)
T ss_pred HHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHH
Confidence 34445557778888888888888888888888888888888888777776666665544456666666666666666666
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhh
Q psy5037 103 HLKFISQETAELENNNHSLDGEMKSCK 129 (224)
Q Consensus 103 ~~~~l~~e~~~lE~r~~~lE~e~nel~ 129 (224)
++-.+..+-...|.+.+..++.+.+++
T Consensus 189 kltalEkeq~e~E~K~R~se~l~qevn 215 (861)
T KOG1899|consen 189 KLTALEKEQNETEKKLRLSENLMQEVN 215 (861)
T ss_pred HHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence 666666677777777777777666665
No 237
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=86.12 E-value=26 Score=31.93 Aligned_cols=92 Identities=24% Similarity=0.217 Sum_probs=70.9
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 125 MKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEE 204 (224)
Q Consensus 125 ~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~ 204 (224)
+..++-.+..++++-...----.++.+.-..+--|+.-|+..+.++++.+..++.+......++...+..|+.|...+..
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~ 158 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDE 158 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666555666677777778888888888888899999888888888888899999999999999999
Q ss_pred HHHHHhchHHHH
Q psy5037 205 LRLQLADTENYK 216 (224)
Q Consensus 205 l~~qL~~~~~~~ 216 (224)
|..+|.......
T Consensus 159 Lre~L~~rdeli 170 (302)
T PF09738_consen 159 LREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHH
Confidence 888886655443
No 238
>KOG1962|consensus
Probab=86.12 E-value=17 Score=31.60 Aligned_cols=74 Identities=12% Similarity=0.225 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037 35 NRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETA 112 (224)
Q Consensus 35 ~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~ 112 (224)
..+-+++..+...+..-.. +..+.....+++.-++.++++...++..+...-..+.+..+.++.+|+.+-++..
T Consensus 130 ~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~ 203 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYS 203 (216)
T ss_pred HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3444455555555444322 3333333333333444444444443333333333333333333333333333333
No 239
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=85.98 E-value=53 Score=35.20 Aligned_cols=71 Identities=11% Similarity=0.037 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 20 IDRFKYELNNLELERNRAQSEVRRLQTELYDMNQ---------HNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEIL 90 (224)
Q Consensus 20 ~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~---------e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i 90 (224)
++......+++....+++-++.+.++..|+.... -...++..+......+.++...+..+.+....+...+
T Consensus 60 ~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l 139 (1109)
T PRK10929 60 RKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSL 139 (1109)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3334444444455555555555555555553221 1355566666666667777777776666664443333
No 240
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=85.92 E-value=15 Score=33.17 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=50.3
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Q psy5037 139 VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTEN 214 (224)
Q Consensus 139 i~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~ 214 (224)
|..|+.++.+....+++-+..|.+|+..+..|-+.--+--=.|.+.+-.|.++|.++-.|..-++++..-|..++-
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDk 145 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDK 145 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhh
Confidence 4455555555555555555555555555555555555555556777778888888888888888888877776643
No 241
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=85.92 E-value=12 Score=28.24 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 20 IDRFKYELNNLELERNRAQSEVRRLQ 45 (224)
Q Consensus 20 ~~~lr~ql~~lr~~r~~a~~E~~rlq 45 (224)
-..+..+++.++..+..+.++++.+.
T Consensus 38 ~r~l~~~~e~lr~~rN~~sk~I~~~~ 63 (108)
T PF02403_consen 38 RRELQQELEELRAERNELSKEIGKLK 63 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 33444444444444444444444443
No 242
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=85.90 E-value=11 Score=27.14 Aligned_cols=57 Identities=19% Similarity=0.273 Sum_probs=21.1
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 147 QDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKE 203 (224)
Q Consensus 147 ~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e 203 (224)
.+....|..+-..-..|....-.+..-++.|+.....+...+..+......+...++
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~ 64 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELE 64 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333
No 243
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=85.88 E-value=11 Score=27.14 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 154 KSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQ 192 (224)
Q Consensus 154 ~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~r 192 (224)
-.+...|-.|+..+..++..+..++.....+..++..++
T Consensus 29 l~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 29 LKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444333
No 244
>KOG0249|consensus
Probab=85.81 E-value=45 Score=34.15 Aligned_cols=70 Identities=7% Similarity=0.167 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQH-------NMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEE 88 (224)
Q Consensus 19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e-------~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~ 88 (224)
...+|.++.....+.+.+..--+--+...+-...++ +..++..|......+-.+....+.....|.-++.
T Consensus 50 ~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~ 126 (916)
T KOG0249|consen 50 MNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEP 126 (916)
T ss_pred HHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhH
Confidence 344444444444444444444444444444433333 3334444444444444555555555555554443
No 245
>KOG4302|consensus
Probab=85.71 E-value=43 Score=33.85 Aligned_cols=139 Identities=15% Similarity=0.121 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy5037 25 YELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHL 104 (224)
Q Consensus 25 ~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~ 104 (224)
+-++++...+..+.++|...+..+..+...+.....-...+...---|+.++..+..-+..+....+..=++..+|..++
T Consensus 54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qi 133 (660)
T KOG4302|consen 54 RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQI 133 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555444333222222211112225667777777767677777777777778888888
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhh-HhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q psy5037 105 KFISQETAELENNNHSLDGEMKSCKNL-LAESEKKVMKLEALVQDKDCSIKSLEAKLEEL 163 (224)
Q Consensus 105 ~~l~~e~~~lE~r~~~lE~e~nel~le-~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l 163 (224)
+.|..++..-++-....-++-+.+-++ +..+++++..|+.+.......+.+|...|-.+
T Consensus 134 e~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l 193 (660)
T KOG4302|consen 134 EKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSL 193 (660)
T ss_pred HHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888865544444444443443322 24455555555555555555555555554443
No 246
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.66 E-value=23 Score=30.81 Aligned_cols=63 Identities=16% Similarity=0.238 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037 37 AQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD 99 (224)
Q Consensus 37 a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~ 99 (224)
..+.+..+.++-..+..+...+..+++.++.....+...+.+...+|..++..|...+.-...
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444444444433
No 247
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=85.55 E-value=38 Score=33.16 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=29.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 149 KDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLG 185 (224)
Q Consensus 149 ~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~ 185 (224)
.......|+.||+.|+.-+..|-+.|...+++.+.++
T Consensus 478 L~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 478 LETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677888888888888888888888888877766
No 248
>PF15294 Leu_zip: Leucine zipper
Probab=85.23 E-value=19 Score=32.52 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhh--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCS--IKSLEAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~--i~~~e~qL~~l~~~~~~lE~EL~~l 177 (224)
|...+..|..|-..+-+|+.+++..++...-+...+...+.++.......... .-....+++.|...++.+..++...
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 67777888888888888888888888888888877777777777733333221 0123334455555555544444433
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 178 QE----EKYRLGEELAGCQETLDTMLRQKEELRL 207 (224)
Q Consensus 178 k~----er~~l~~dL~~~re~~~kld~~~e~l~~ 207 (224)
-. .-..+..+|..++......+........
T Consensus 210 ~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aek 243 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSCKHELLRVQEQLSLAEK 243 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchh
Confidence 33 3335556666666555555554443333
No 249
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=84.69 E-value=20 Score=29.23 Aligned_cols=48 Identities=23% Similarity=0.345 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEE 180 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~e 180 (224)
.++.+=+..++++|..+...+..+...|..|......+..+++.+...
T Consensus 90 ~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 90 KSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556888888888888888888888888888888888888888877653
No 250
>KOG4809|consensus
Probab=84.57 E-value=44 Score=33.06 Aligned_cols=108 Identities=18% Similarity=0.255 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~ 179 (224)
+++.++.-..+..+|--++..+.+++.+..-.+..+++...+|..-+......+.+++--|+........|+..|...+.
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~ 408 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHN 408 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555556666666666666655555555566677777777777777777777777777777777777777776654
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 180 -------------EKYRLGEELAGCQETLDTMLRQKEELRL 207 (224)
Q Consensus 180 -------------er~~l~~dL~~~re~~~kld~~~e~l~~ 207 (224)
.+..+..+.+..+++|.+..+.++++=-
T Consensus 409 ~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLe 449 (654)
T KOG4809|consen 409 IEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLE 449 (654)
T ss_pred hhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777888887777776543
No 251
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=84.52 E-value=35 Score=31.84 Aligned_cols=82 Identities=12% Similarity=0.141 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHhHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5037 133 AESEKKVMKLEALVQDKDC-SIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLAD 211 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~-~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~ 211 (224)
..++.+++.++..|..... ...++...+..+...+..+...+..++.+-. .+.........|.+..+..+..++.
T Consensus 285 ~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~l~~~~~~~~~L~r~~~~~~~~y~~ 360 (444)
T TIGR03017 285 KRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVL----ELNRQRDEMSVLQRDVENAQRAYDA 360 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555443222 2222333444444444555544444433322 2222233344455555555555555
Q ss_pred hHHHHHh
Q psy5037 212 TENYKTK 218 (224)
Q Consensus 212 ~~~~~~~ 218 (224)
+-.+..+
T Consensus 361 ll~r~~e 367 (444)
T TIGR03017 361 AMQRYTQ 367 (444)
T ss_pred HHHHHHH
Confidence 5544443
No 252
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=84.33 E-value=32 Score=31.29 Aligned_cols=105 Identities=14% Similarity=0.191 Sum_probs=87.1
Q ss_pred hhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 117 NNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLD 196 (224)
Q Consensus 117 r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~ 196 (224)
++..+-..=..++..+..+-++-.....-+........+|...++.+++.+..||.+-..++...+.-...|..+-+...
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33334344456666667778888888888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchHHHHHhhcC
Q psy5037 197 TMLRQKEELRLQLADTENYKTKESA 221 (224)
Q Consensus 197 kld~~~e~l~~qL~~~~~~~~~l~~ 221 (224)
..+..++.+..++..+..--..|..
T Consensus 283 ~~~~~~~~~~~k~~kLe~LcRaLQ~ 307 (309)
T PF09728_consen 283 KLEKELEKLKKKIEKLEKLCRALQA 307 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999888887776655543
No 253
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.90 E-value=15 Score=27.03 Aligned_cols=63 Identities=29% Similarity=0.268 Sum_probs=38.0
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 140 MKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQK 202 (224)
Q Consensus 140 ~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~ 202 (224)
..|+.+|...-..|.-+...|++|+..=..+..+...++.-|+.|..+...++.....-..++
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666666666666665555555555544444333
No 254
>PRK00736 hypothetical protein; Provisional
Probab=83.87 E-value=10 Score=26.77 Aligned_cols=46 Identities=22% Similarity=0.376 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEE 180 (224)
Q Consensus 135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~e 180 (224)
+..|+..|+.++.-.+..|+.+...+..-.+.+..|...|+.+.+.
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~r 48 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTER 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666665555555555555555555555555555555443
No 255
>PRK02793 phi X174 lysis protein; Provisional
Probab=83.86 E-value=12 Score=26.84 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEE 180 (224)
Q Consensus 135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~e 180 (224)
+..|+..|+.++.-.+..|+++...+..-.+.+..|...|+.+.+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~r 51 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEK 51 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666665555555555555555555555555555555443
No 256
>PRK00295 hypothetical protein; Provisional
Probab=83.85 E-value=11 Score=26.73 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179 (224)
Q Consensus 135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~ 179 (224)
+..|+..|+.++.-.+..|+++...+..-.+.+..|...|+.+.+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666665555555555555555555544
No 257
>KOG1853|consensus
Probab=83.62 E-value=33 Score=30.84 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy5037 93 KESERLDLLKHLKFISQETAELENNNHSLDG 123 (224)
Q Consensus 93 kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~ 123 (224)
++.+...+-..-+.++.-+..||..+.+|+-
T Consensus 96 Leddlsqt~aikeql~kyiReLEQaNDdLEr 126 (333)
T KOG1853|consen 96 LEDDLSQTHAIKEQLRKYIRELEQANDDLER 126 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3444444555555556666666666666653
No 258
>KOG0999|consensus
Probab=83.56 E-value=50 Score=32.88 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=13.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q psy5037 13 AKLATTEIDRFKYELNNLELER 34 (224)
Q Consensus 13 ~~~~~~e~~~lr~ql~~lr~~r 34 (224)
....-+||.+|-+.|+++...+
T Consensus 10 ve~lr~eierLT~el~q~t~e~ 31 (772)
T KOG0999|consen 10 VEKLRQEIERLTEELEQTTEEK 31 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777754443
No 259
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=83.54 E-value=28 Score=30.01 Aligned_cols=138 Identities=17% Similarity=0.149 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHh-------
Q psy5037 61 ELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLA------- 133 (224)
Q Consensus 61 ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~------- 133 (224)
-|.+.+.........++.+..+-+.+-+.+...+.-..+|-.+|..+..-+..+=.+-..+-.-+....-.+.
T Consensus 56 ~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~ 135 (207)
T PF05010_consen 56 MIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQ 135 (207)
T ss_pred HHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555566666666666666666666666655554433333333222222221
Q ss_pred ----HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 134 ----ESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQ 201 (224)
Q Consensus 134 ----~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~ 201 (224)
.+..++.....+|.. ....+...+..|+..+...+-.+..|...-.....+...+-..||.|=+.
T Consensus 136 aLK~hAeekL~~ANeei~~---v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k 204 (207)
T PF05010_consen 136 ALKAHAEEKLEKANEEIAQ---VRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISK 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222221 22233444555555555555555555555555555555566666666443
No 260
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=83.49 E-value=17 Score=27.88 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy5037 59 QQELEASRTEAEDV--KLQLQHYCCEVQRIEEILSKKESERLDL 100 (224)
Q Consensus 59 ~~ele~~e~eleeL--k~~~~~~~~E~~rlE~~i~~kE~E~~~L 100 (224)
...+...+..++.| ...+|...-+|..+.+.+......+..+
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33344444444444 4444444444444444444444444443
No 261
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.36 E-value=56 Score=33.31 Aligned_cols=22 Identities=9% Similarity=0.181 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhHHhhHHH
Q psy5037 134 ESEKKVMKLEALVQDKDCSIKS 155 (224)
Q Consensus 134 ~~~~ri~~le~~I~e~~~~i~~ 155 (224)
.+..++..+...|.+....+..
T Consensus 643 ~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 643 RMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 262
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=82.95 E-value=38 Score=31.06 Aligned_cols=159 Identities=19% Similarity=0.198 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy5037 17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQEL-EASRTEAEDVKLQLQHYCCEVQRIEEILSKKES 95 (224)
Q Consensus 17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~el-e~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~ 95 (224)
.++-..|+.+|+..+.+-..+..+|+.|...--.+......-+..| ..+-..|..++.+-..+.-.+.+=|+-+.
T Consensus 33 ~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~lt---- 108 (310)
T PF09755_consen 33 QQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLT---- 108 (310)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3455566666666666666666666666555444443332222221 12223333344333333333322222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhhhhhhhHhHH-------HHHHHHHHHHHHhHHhhHH-HHHHHHHHHHHH
Q psy5037 96 ERLDLLKHLKFISQETAELENNNHS-LDGEMKSCKNLLAES-------EKKVMKLEALVQDKDCSIK-SLEAKLEELSHV 166 (224)
Q Consensus 96 E~~~Lle~~~~l~~e~~~lE~r~~~-lE~e~nel~le~~~~-------~~ri~~le~~I~e~~~~i~-~~e~qL~~l~~~ 166 (224)
..|...+..|..+-..+|+.+.. -++-++-+...+..+ .....-+.++..+++++++ +.+.-+..|.+.
T Consensus 109 --n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kq 186 (310)
T PF09755_consen 109 --NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQ 186 (310)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 23444445555555555544433 223333333333222 2222333444444444443 344445666666
Q ss_pred HHHHHHHHHHHHHHH
Q psy5037 167 TAQLETQVQCCQEEK 181 (224)
Q Consensus 167 ~~~lE~EL~~lk~er 181 (224)
+..|+.+=+.|+..-
T Consensus 187 m~~l~~eKr~Lq~~l 201 (310)
T PF09755_consen 187 MDKLEAEKRRLQEKL 201 (310)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666665543
No 263
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=82.76 E-value=17 Score=35.18 Aligned_cols=101 Identities=12% Similarity=0.133 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 16 ATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEA----SRTEAEDVKLQLQHYCCEVQRIEEILS 91 (224)
Q Consensus 16 ~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~----~e~eleeLk~~~~~~~~E~~rlE~~i~ 91 (224)
..-.+..|+.+|..+...+..+..++..++..+.-+..-.......+.. ....+.++..-..-|..++..+-..+.
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDR 148 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666677776666666666666655555553332221111111111 022466777778888888888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 92 KKESERLDLLKHLKFISQETAELEN 116 (224)
Q Consensus 92 ~kE~E~~~Lle~~~~l~~e~~~lE~ 116 (224)
..+..+.++.+++..+..++..+.+
T Consensus 149 ~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 149 EAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8888888888887777777776654
No 264
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=82.68 E-value=5.6 Score=27.29 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=16.2
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 139 VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQV 174 (224)
Q Consensus 139 i~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL 174 (224)
+.+++.++..+...|...+.+++.++..+..++.-+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444
No 265
>PRK02119 hypothetical protein; Provisional
Probab=82.52 E-value=14 Score=26.48 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179 (224)
Q Consensus 135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~ 179 (224)
+..|+..|+.++.-.+..|+++...+..-.+.+..|...|+.+.+
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666665555555555555555544
No 266
>KOG2991|consensus
Probab=82.10 E-value=38 Score=30.49 Aligned_cols=175 Identities=16% Similarity=0.180 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHH
Q psy5037 30 LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD--LLKHLKFI 107 (224)
Q Consensus 30 lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~--Lle~~~~l 107 (224)
+...+..+...-.++......+.++...+-..+...+.+..++..+++.|.+...=.-.-+ -.-.-+ +..-|.++
T Consensus 106 l~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~ql---R~~llDPAinl~F~rl 182 (330)
T KOG2991|consen 106 LSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQL---RSTLLDPAINLFFLRL 182 (330)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH---HHHhhChHHHHHHHHH
Confidence 3455555555555666666666666666666666666666666666666655432111000 000000 44455555
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhh-----------hH-------------hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q psy5037 108 SQETAELENNNHSLDGEMKSCKN-----------LL-------------AESEKKVMKLEALVQDKDCSIKSLEAKLEEL 163 (224)
Q Consensus 108 ~~e~~~lE~r~~~lE~e~nel~l-----------e~-------------~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l 163 (224)
..++...-.++..+..+++..+- .+ .....||+.|+-++.=-...-+++.++-++|
T Consensus 183 K~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL 262 (330)
T KOG2991|consen 183 KGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEEL 262 (330)
T ss_pred HHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHH
Confidence 55555555555555554443211 00 2335666666666666666666666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 164 SHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRL 207 (224)
Q Consensus 164 ~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~ 207 (224)
-.=+.+|.+++.+.+.-.--|+..|...|..+-.+....+-+..
T Consensus 263 ~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sq 306 (330)
T KOG2991|consen 263 YDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQ 306 (330)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777766655554443
No 267
>KOG0247|consensus
Probab=81.93 E-value=47 Score=33.96 Aligned_cols=111 Identities=13% Similarity=0.105 Sum_probs=80.8
Q ss_pred HHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 112 AELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCS--IKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA 189 (224)
Q Consensus 112 ~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~--i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~ 189 (224)
-.|-+...+.+..+..++.+.+.+..+....+..|.-.+.. ++..+.....+...-.+++......+..+..+..-+.
T Consensus 537 ~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~E~~~~~~~i~~l~~el~eq~~~~~~~~~~~~~~~~~~~~~~~ 616 (809)
T KOG0247|consen 537 QMLSSQLNDKKEQIEQLRDEIERLKKENLTTEYSIEILESTEYEEEIEALDQELEEQKMELQQKFSEKKKAMAKVRGILA 616 (809)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhHHHHHHHHhhhHHHHhhccchhHHHhhhccccC
Confidence 55666666667777777777777777777777777666665 5555555566666666777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhhcCCC
Q psy5037 190 GCQETLDTMLRQKEELRLQLADTENYKTKESAPM 223 (224)
Q Consensus 190 ~~re~~~kld~~~e~l~~qL~~~~~~~~~l~~~~ 223 (224)
....+| .+-+....++..|...++....+.++|
T Consensus 617 ~t~~~~-~v~~~~~~~~~~l~~~~e~l~~~~~~i 649 (809)
T KOG0247|consen 617 NTSPEC-SVAAKLLELQSKLWFKDEKLKHLTAII 649 (809)
T ss_pred CCchhh-hHHHHHHHHHHHhcccHHHHHHhhccc
Confidence 777788 777777788888889898888888765
No 268
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.68 E-value=17 Score=26.21 Aligned_cols=45 Identities=22% Similarity=0.401 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy5037 29 NLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVK 73 (224)
Q Consensus 29 ~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk 73 (224)
.+..+..-|..-|.-||..++++...+..+..+-.......+.|.
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 344444445555555555555544444444444433333333333
No 269
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=81.52 E-value=11 Score=26.51 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEK 181 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er 181 (224)
..|+..|+.++.-.+..|+.+...+..-...+..|+..|+.+.+.-
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444444444444444444444444444444433
No 270
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=81.30 E-value=23 Score=27.48 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHH
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIK 154 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~ 154 (224)
|...+.........|=..-..|.+-.+.++-+..+...|+++|+.+|.+....++
T Consensus 21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333344444444444444433333
No 271
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=81.23 E-value=15 Score=29.51 Aligned_cols=83 Identities=20% Similarity=0.227 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 36 RAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELE 115 (224)
Q Consensus 36 ~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE 115 (224)
.+..+.++|..--.............-......+.+....+..|-.-|.+++..+..|+.|+..|..+++.+...-..||
T Consensus 49 ~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 49 AVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556666655555544444444444445667788888888999999999999999999999888888888877777776
Q ss_pred hhh
Q psy5037 116 NNN 118 (224)
Q Consensus 116 ~r~ 118 (224)
.|+
T Consensus 129 krl 131 (131)
T PF04859_consen 129 KRL 131 (131)
T ss_pred ccC
Confidence 653
No 272
>KOG2991|consensus
Probab=81.12 E-value=42 Score=30.27 Aligned_cols=139 Identities=14% Similarity=0.172 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy5037 19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERL 98 (224)
Q Consensus 19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~ 98 (224)
.=.+|++|+..+.++-..+........-.+.+++.-++.+.....-+-..+..+=-. -.+.....|+.+.+......+.
T Consensus 116 se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llD-PAinl~F~rlK~ele~tk~Kle 194 (330)
T KOG2991|consen 116 SEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLD-PAINLFFLRLKGELEQTKDKLE 194 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhC-hHHHHHHHHHHHHHHHHHHHHH
Confidence 335677777766665555555555555555555444444443332222111110000 0112233344444444444443
Q ss_pred H-------------------HHHHHHHHHHHHHHH-----HhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHH
Q psy5037 99 D-------------------LLKHLKFISQETAEL-----ENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIK 154 (224)
Q Consensus 99 ~-------------------Lle~~~~l~~e~~~l-----E~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~ 154 (224)
+ |+...+.|-.+-..+ ++||+.|+.++.=-+-.-+.++..-..|-.-+.++...++
T Consensus 195 e~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVE 274 (330)
T KOG2991|consen 195 EAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVE 274 (330)
T ss_pred HHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3 888888888877766 7888888777654333333333333333333333333333
Q ss_pred HHHH
Q psy5037 155 SLEA 158 (224)
Q Consensus 155 ~~e~ 158 (224)
.+.+
T Consensus 275 gmqs 278 (330)
T KOG2991|consen 275 GMQS 278 (330)
T ss_pred cchh
Confidence 3333
No 273
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=80.99 E-value=16 Score=25.47 Aligned_cols=44 Identities=14% Similarity=0.360 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 43 RLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRI 86 (224)
Q Consensus 43 rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rl 86 (224)
.++..|..+...+..+...|.+++....+|..++..+..+|..+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666666666666666666666666666554
No 274
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=80.89 E-value=6.3 Score=36.73 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKS 127 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~ne 127 (224)
|..++..+.+.+..+|+++..++..+..
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~ 169 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKE 169 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHH
Confidence 3333344444444444444444443333
No 275
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=80.83 E-value=24 Score=31.69 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 42 RRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAEL 114 (224)
Q Consensus 42 ~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~l 114 (224)
..++.-+..+...++.++..+..+..+-..|..+++.-..|+.|....+..+.+-+=.-+++|+.+..++..+
T Consensus 165 ~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 165 KALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
No 276
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=80.54 E-value=30 Score=28.25 Aligned_cols=60 Identities=25% Similarity=0.372 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCC 81 (224)
Q Consensus 17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~ 81 (224)
+.+|..|+.|+..++.....+..+...|...+. +..+...|..+..++..|..+++.+.+
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-----~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPT-----NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444333331 133444455555555555555544443
No 277
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=80.38 E-value=23 Score=26.76 Aligned_cols=33 Identities=15% Similarity=0.353 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5037 40 EVRRLQTELYDMNQHNMTIQQELEASRTEAEDV 72 (224)
Q Consensus 40 E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeL 72 (224)
....++.++..+......+...+.+...-+++|
T Consensus 7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL 39 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKVEAQLNENKKALEEL 39 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333333
No 278
>PRK01203 prefoldin subunit alpha; Provisional
Probab=80.29 E-value=29 Score=27.88 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLE 171 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE 171 (224)
.+...++..+..++...+..|.....++..+...+..|-
T Consensus 83 K~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 83 EERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888888887777777777777777666665
No 279
>PRK04406 hypothetical protein; Provisional
Probab=80.18 E-value=18 Score=26.09 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l 177 (224)
..|+..|+.+|.-.+..|+++...+..-.+.+..|...|+.+
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444
No 280
>PF13514 AAA_27: AAA domain
Probab=79.64 E-value=90 Score=33.21 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 60 QELEASRTEAEDVKLQLQHYCCEVQRI 86 (224)
Q Consensus 60 ~ele~~e~eleeLk~~~~~~~~E~~rl 86 (224)
..+......+..|+..+..+...+..+
T Consensus 743 ~~~~~~~~ri~~~~~~~~~f~~~~~~L 769 (1111)
T PF13514_consen 743 AEIRELRRRIEQMEADLAAFEEQVAAL 769 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444
No 281
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=79.33 E-value=14 Score=31.63 Aligned_cols=96 Identities=19% Similarity=0.163 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 16 ATTEIDRFKYELNNLELERNRAQSEVRRL----QTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILS 91 (224)
Q Consensus 16 ~~~e~~~lr~ql~~lr~~r~~a~~E~~rl----q~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~ 91 (224)
++-|.-+|++||..+....+.+.+....- .....-+.. .++.-|+=.+.++.+++.-......-+..+.+.|.
T Consensus 94 ~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~---e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~ 170 (195)
T PF12761_consen 94 TDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKR---EFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLD 170 (195)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHH---HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHH
Confidence 45688899999998888877777766652 111111111 22233333444444444333344455666666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 92 KKESERLDLLKHLKFISQETAEL 114 (224)
Q Consensus 92 ~kE~E~~~Lle~~~~l~~e~~~l 114 (224)
.++....-|..++..-..++..|
T Consensus 171 ~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 171 TIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666665555555444
No 282
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=79.10 E-value=41 Score=29.01 Aligned_cols=166 Identities=14% Similarity=0.166 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5037 39 SEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNN 118 (224)
Q Consensus 39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~ 118 (224)
.++..|...++.....+..+..-+...+.-+..|-...+.- -......|...-.+++.+..++.++.....+|=.++
T Consensus 23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~---~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ry 99 (207)
T PF05010_consen 23 EEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQ---KELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRY 99 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh---HHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444444444444444444444444444433333222211 111223333333444444444444444444444444
Q ss_pred hhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 119 HSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSH-VTAQLETQVQCCQEEKYRLGEELAGCQETLDT 197 (224)
Q Consensus 119 ~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~-~~~~lE~EL~~lk~er~~l~~dL~~~re~~~k 197 (224)
...-..+ .++...-..|..-|.++...+...+.....|.. +...|+.=-..+-.-+.....++.+++...-+
T Consensus 100 ek~K~vi-------~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk 172 (207)
T PF05010_consen 100 EKQKEVI-------EGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKK 172 (207)
T ss_pred HHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444 444444455555566666655555555555432 22223322223333334445555556666666
Q ss_pred HHHHHHHHHHHHhchHH
Q psy5037 198 MLRQKEELRLQLADTEN 214 (224)
Q Consensus 198 ld~~~e~l~~qL~~~~~ 214 (224)
..-.+..|...|.-+.-
T Consensus 173 ~e~~~~SLe~~LeQK~k 189 (207)
T PF05010_consen 173 EEMKVQSLEESLEQKTK 189 (207)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666655555554443
No 283
>PRK00846 hypothetical protein; Provisional
Probab=78.81 E-value=22 Score=26.02 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 134 ESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKY 182 (224)
Q Consensus 134 ~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~ 182 (224)
.+..|+..|+.++.-.+..|+.+...+......+..|...|+.+.+.-.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666666666666665555433
No 284
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.79 E-value=40 Score=32.66 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy5037 23 FKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELE 63 (224)
Q Consensus 23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele 63 (224)
|=-++.+++.+...+..+|..|..+-+++..+...+...|.
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33344444444444444444444444444444444444443
No 285
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=78.69 E-value=27 Score=33.72 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=18.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 149 KDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEEL 188 (224)
Q Consensus 149 ~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL 188 (224)
.......|..++.++..+...++..++.++.+...+...|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443
No 286
>KOG0982|consensus
Probab=78.66 E-value=65 Score=31.02 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy5037 92 KKESERLDLLKHLKFISQETAELENNNHSL 121 (224)
Q Consensus 92 ~kE~E~~~Lle~~~~l~~e~~~lE~r~~~l 121 (224)
+.-.|+..|-..|+.|.+.....|.+....
T Consensus 247 rlkqEnlqLvhR~h~LEEq~reqElraeE~ 276 (502)
T KOG0982|consen 247 RLKQENLQLVHRYHMLEEQRREQELRAEES 276 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 333444455555555555555555544433
No 287
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=78.40 E-value=50 Score=29.54 Aligned_cols=143 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037 13 AKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSK 92 (224)
Q Consensus 13 ~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~ 92 (224)
....+..++.|.+|++++..++..+..+++-|..=.+ .+-..-...|..+.+.+..++..-++--.++.
T Consensus 76 eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD---~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~-------- 144 (258)
T PF15397_consen 76 EEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD---HEYPVKAVQIANLVRQLQQLKDSQQDELDELN-------- 144 (258)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH----------hHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q psy5037 93 KESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL----------AESEKKVMKLEALVQDKDCSIKSLEAKLEE 162 (224)
Q Consensus 93 kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~----------~~~~~ri~~le~~I~e~~~~i~~~e~qL~~ 162 (224)
.....+...++++++...-.+.+.--.. .-+ -....+...|..|..-|..++..|..
T Consensus 145 ------------e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~-~~N~~m~kei~~~re~i~el~e~I~~ 211 (258)
T PF15397_consen 145 ------------EMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRT-LENQVMQKEIVQFREEIDELEEEIPQ 211 (258)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5037 163 LSHVTAQLETQVQCCQE 179 (224)
Q Consensus 163 l~~~~~~lE~EL~~lk~ 179 (224)
|+..|..|.......++
T Consensus 212 L~~eV~~L~~~~~~~Re 228 (258)
T PF15397_consen 212 LRAEVEQLQAQAQDPRE 228 (258)
T ss_pred HHHHHHHHHHhhcchHH
No 288
>PRK04325 hypothetical protein; Provisional
Probab=78.35 E-value=22 Score=25.51 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 137 KKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 137 ~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l 177 (224)
.|+..|+.++.-.+..|+.+...+..-.+.+..|...|+.+
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444333
No 289
>KOG4603|consensus
Probab=78.26 E-value=21 Score=30.21 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=45.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q psy5037 89 ILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEEL 163 (224)
Q Consensus 89 ~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l 163 (224)
.+..++.++..|+++.+++...+..+|..+..|.+-++- ..+++.+++|...+..+...+..+.+-....
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~-----eemQe~i~~L~kev~~~~erl~~~k~g~~~v 149 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT-----EEMQEEIQELKKEVAGYRERLKNIKAGTNHV 149 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 445555566667777777777777776666666654433 5567777777777777777777776655443
No 290
>KOG1899|consensus
Probab=78.07 E-value=82 Score=31.88 Aligned_cols=45 Identities=20% Similarity=0.184 Sum_probs=30.6
Q ss_pred HHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHH
Q psy5037 112 AELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSL 156 (224)
Q Consensus 112 ~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~ 156 (224)
..||.+--+|=+++++++|-+-.++-...+.+.+.-..+..++..
T Consensus 170 tsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qev 214 (861)
T KOG1899|consen 170 TSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEV 214 (861)
T ss_pred hhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHH
Confidence 678999889999999999888666555544554444444444443
No 291
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.97 E-value=23 Score=25.53 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=32.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy5037 50 DMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKH 103 (224)
Q Consensus 50 ~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~ 103 (224)
.+...++..-.-|.-+.-++++||.+-.++..|++.+..-...++.++..|..+
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555666667777777777777776666666666666554433
No 292
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=77.86 E-value=45 Score=28.80 Aligned_cols=92 Identities=15% Similarity=0.290 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy5037 36 RAQSEVRRLQTELYDMNQHNMTIQQELEASRTE------------AEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKH 103 (224)
Q Consensus 36 ~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~e------------leeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~ 103 (224)
.....+..|+..+..+-.....+..+|...... +.+|...+....+.+..+...+.........+...
T Consensus 35 ~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~ 114 (240)
T PF12795_consen 35 KQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTR 114 (240)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344455555555555555555555555555443 44555555555555555555555555555555554
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhh
Q psy5037 104 LKFISQETAELENNNHSLDGEMKS 127 (224)
Q Consensus 104 ~~~l~~e~~~lE~r~~~lE~e~ne 127 (224)
-..+...+...-.++.++...++.
T Consensus 115 p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 115 PERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555444444444444444443
No 293
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=77.56 E-value=30 Score=26.55 Aligned_cols=47 Identities=28% Similarity=0.416 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~ 179 (224)
..+..+...-..........|..+..+|+.+......++..|..++.
T Consensus 63 ~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 63 ERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666667777777777777777777777777766543
No 294
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=77.43 E-value=29 Score=26.42 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q psy5037 43 RLQTELYDMNQHNMTIQQELE 63 (224)
Q Consensus 43 rlq~dL~~~~~e~~~l~~ele 63 (224)
.++..+..+......+...+.
T Consensus 14 ~~q~~~~~l~~q~~~le~~~~ 34 (110)
T TIGR02338 14 QLQQQLQAVATQKQQVEAQLK 34 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 295
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=77.10 E-value=31 Score=28.71 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy5037 32 LERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQET 111 (224)
Q Consensus 32 ~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~ 111 (224)
.+.-....++..+++.++.+..........-+.. .+.....+..|+..++..|..++.+...|.+|+..+..+.
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~------~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQAESASEAAEKL------LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555566666666665555444333322222 4555666777777777777778888888888887776653
No 296
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=77.06 E-value=75 Score=30.89 Aligned_cols=178 Identities=15% Similarity=0.194 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHH---HHHHHHH
Q psy5037 30 LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIE----EILSKKES---ERLDLLK 102 (224)
Q Consensus 30 lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE----~~i~~kE~---E~~~Lle 102 (224)
+..-.--+...|+.-+..|-++.+.+--|+.++++++-.+-. -+-.+.=|.+|+ ++|..|=+ |..++..
T Consensus 315 LNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~k----QqvfvDiinkLk~niEeLIedKY~viLEKnd~~k 390 (527)
T PF15066_consen 315 LNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITK----QQVFVDIINKLKENIEELIEDKYRVILEKNDIEK 390 (527)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHH
Confidence 455555667778888888999999999998888877543321 111222223332 22222222 2223555
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 103 HLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKY 182 (224)
Q Consensus 103 ~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~ 182 (224)
-++.|++-+......++.-..+-..+++++..+...-..|.++...-...-..+=+|.-++.+.++.=++++..|+.-|.
T Consensus 391 ~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkg 470 (527)
T PF15066_consen 391 TLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKG 470 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56666666666666666666666666666644443334444333332233333445677777888888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Q psy5037 183 RLGEELAGCQETLDTMLRQKEELRLQLADTEN 214 (224)
Q Consensus 183 ~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~ 214 (224)
.+.... ..-.+-|...++....++-++..
T Consensus 471 elEkat---~SALdlLkrEKe~~EqefLslqe 499 (527)
T PF15066_consen 471 ELEKAT---TSALDLLKREKETREQEFLSLQE 499 (527)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 777433 33344455555555555555443
No 297
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=76.57 E-value=79 Score=30.92 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 138 KVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 138 ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l 177 (224)
+...++.++.........|...+..+-.....+..+|..+
T Consensus 302 ~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l 341 (563)
T TIGR00634 302 RLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQL 341 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443
No 298
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=76.33 E-value=22 Score=24.35 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy5037 36 RAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQL 76 (224)
Q Consensus 36 ~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~ 76 (224)
-=...+..|+..+..+..++..+...+..+..++..|+.+.
T Consensus 23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344455555555555555555555555555555554443
No 299
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=75.98 E-value=62 Score=29.44 Aligned_cols=108 Identities=16% Similarity=0.187 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHH-------HHHHHHHHHH
Q psy5037 96 ERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEA-------KLEELSHVTA 168 (224)
Q Consensus 96 E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~-------qL~~l~~~~~ 168 (224)
++..|.+.|..+-...+-.|-.++ .-+...-++..-+.-+.......+..-......+.. ++..+.....
T Consensus 136 eN~~L~eKlK~l~eQye~rE~~~~---~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~ 212 (309)
T PF09728_consen 136 ENEELREKLKSLIEQYELREEHFE---KLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEK 212 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333366666666655554433332 222223333333333333333333333333333333 5555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 169 QLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELR 206 (224)
Q Consensus 169 ~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~ 206 (224)
.|...|..+-+.-.....-|...-+........++.+.
T Consensus 213 ~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~ 250 (309)
T PF09728_consen 213 ELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMS 250 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55555555555555555554444444444444444443
No 300
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=75.70 E-value=31 Score=25.83 Aligned_cols=76 Identities=13% Similarity=0.144 Sum_probs=51.7
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhh
Q psy5037 144 ALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKE 219 (224)
Q Consensus 144 ~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l 219 (224)
.++.....+......++..+......++..+..+..++......+-++..-.+.++..+-.|+.+++--.....+|
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L 78 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQL 78 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4555666666666677777777777777777777777777777777777777777777777777666544444433
No 301
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=75.24 E-value=15 Score=25.14 Aligned_cols=14 Identities=29% Similarity=0.256 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q psy5037 93 KESERLDLLKHLKF 106 (224)
Q Consensus 93 kE~E~~~Lle~~~~ 106 (224)
.+.-+.+|++=|+.
T Consensus 33 i~envk~ll~lYE~ 46 (55)
T PF05377_consen 33 IEENVKDLLSLYEV 46 (55)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444443
No 302
>PRK04406 hypothetical protein; Provisional
Probab=75.00 E-value=25 Score=25.39 Aligned_cols=38 Identities=5% Similarity=0.083 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 137 KKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQV 174 (224)
Q Consensus 137 ~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL 174 (224)
.+++-++.-|.+....+-....+|..|...+..|-..|
T Consensus 18 ~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 18 CQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444443333
No 303
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=74.94 E-value=24 Score=24.24 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy5037 28 NNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAE 70 (224)
Q Consensus 28 ~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~ele 70 (224)
|.|....+.+...+..|+.++..+..+.+....+-.....+|+
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444443333333
No 304
>KOG1962|consensus
Probab=74.92 E-value=35 Score=29.71 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 37 AQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQR 85 (224)
Q Consensus 37 a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~r 85 (224)
...++..+..++..+..+.+....+++..+.....|+.+.++...|-++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Eydr 197 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDR 197 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 4445555555555555555555555555555555555555444444433
No 305
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=74.80 E-value=42 Score=27.17 Aligned_cols=79 Identities=10% Similarity=0.045 Sum_probs=0.0
Q ss_pred Cccccchhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 1 ETLNLNKRS---EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQ 77 (224)
Q Consensus 1 ~~~~~~~~~---~~~~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~ 77 (224)
.++++...+ .--...+-.....|-+||.+.....+.+..++.+.+..++.....++.++..+.....++.+.....+
T Consensus 7 ~~~~~Pp~~~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~ 86 (160)
T PF13094_consen 7 ARLPFPPQKREDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAH 86 (160)
T ss_pred CCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred HH
Q psy5037 78 HY 79 (224)
Q Consensus 78 ~~ 79 (224)
.+
T Consensus 87 ~v 88 (160)
T PF13094_consen 87 PV 88 (160)
T ss_pred hh
No 306
>KOG0240|consensus
Probab=74.73 E-value=95 Score=30.92 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=48.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 9 SEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCE 82 (224)
Q Consensus 9 ~~~~~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E 82 (224)
.+.+...++.++.+|.+|+|+.-.......+..-.|+..+-.-..-.....+..+.+..+..++....+....+
T Consensus 412 ~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e 485 (607)
T KOG0240|consen 412 LEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDE 485 (607)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788889999999999888777777777777776666555544455555555555544444444433333
No 307
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=74.58 E-value=27 Score=24.67 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 20 IDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQH 78 (224)
Q Consensus 20 ~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~ 78 (224)
+..|-.+++.+=..-..+..+|..|........++...+..+.+.....++-|=..+.+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45677777777777778888888888888888888888888888887777777655543
No 308
>PF13166 AAA_13: AAA domain
Probab=74.12 E-value=97 Score=30.78 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 55 NMTIQQELEASRTEAEDVKLQLQHY 79 (224)
Q Consensus 55 ~~~l~~ele~~e~eleeLk~~~~~~ 79 (224)
...+...+......++.+...+...
T Consensus 324 ~~~~~~~~~~l~~~l~~l~~~L~~K 348 (712)
T PF13166_consen 324 KEELKSAIEALKEELEELKKALEKK 348 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 309
>PF15456 Uds1: Up-regulated During Septation
Probab=73.79 E-value=43 Score=26.54 Aligned_cols=86 Identities=15% Similarity=0.204 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----------HHHHHHHHhhhhhhhhhhhhhhhhHhHH
Q psy5037 67 TEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFI-----------SQETAELENNNHSLDGEMKSCKNLLAES 135 (224)
Q Consensus 67 ~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l-----------~~e~~~lE~r~~~lE~e~nel~le~~~~ 135 (224)
.++++|+.+++.+.+.+.-+...+. .+..+.+....+..+ +..+..-+--+...+..+.++-.++..+
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4566666666666666666655555 454444422222222 1122222333333333344444444445
Q ss_pred HHHHHHHHHHHHhHHhhH
Q psy5037 136 EKKVMKLEALVQDKDCSI 153 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i 153 (224)
++|...+..++=+|.+++
T Consensus 101 e~R~~~~~~rLLeH~Aav 118 (124)
T PF15456_consen 101 ENRLAEVRQRLLEHTAAV 118 (124)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555554
No 310
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=73.76 E-value=50 Score=27.27 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5037 95 SERLDLLKHLKFISQETAELE 115 (224)
Q Consensus 95 ~E~~~Lle~~~~l~~e~~~lE 115 (224)
++..+|..++..+.++...|+
T Consensus 89 ~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 89 QERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444
No 311
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=73.34 E-value=55 Score=27.59 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q psy5037 95 SERLDLLKHLKFISQETAELENNNH 119 (224)
Q Consensus 95 ~E~~~Lle~~~~l~~e~~~lE~r~~ 119 (224)
.++..++..+..+..+...+...+.
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666655544
No 312
>PRK02119 hypothetical protein; Provisional
Probab=73.27 E-value=31 Score=24.71 Aligned_cols=41 Identities=10% Similarity=0.162 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQC 176 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~ 176 (224)
+.+++-++.-|.+....+-....+|..|+..+..|-..|+.
T Consensus 15 E~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 15 EMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444444444444443
No 313
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=72.95 E-value=24 Score=24.10 Aligned_cols=24 Identities=13% Similarity=0.237 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 63 EASRTEAEDVKLQLQHYCCEVQRI 86 (224)
Q Consensus 63 e~~e~eleeLk~~~~~~~~E~~rl 86 (224)
..++..+..|......+..++..+
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 314
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=72.45 E-value=19 Score=26.73 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037 31 ELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA----EDVKLQLQHYCCEVQRIEEILSKKESERLDLLK 102 (224)
Q Consensus 31 r~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~el----eeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle 102 (224)
...+..+.++|.+|+..|..=..=...|+.-+.-...-+ .-|-...+....||+-+|..|..+|..+.+|--
T Consensus 7 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~ 82 (88)
T PF14389_consen 7 HERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYR 82 (88)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777655555555554444332222 344556777777777777777777777666543
No 315
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=72.03 E-value=43 Score=25.78 Aligned_cols=42 Identities=26% Similarity=0.408 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 134 ESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQ 175 (224)
Q Consensus 134 ~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~ 175 (224)
++.+-+.-++++|......+..+...+..++..+..+...|.
T Consensus 83 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 83 DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555566666666666666666666666665555555443
No 316
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=71.67 E-value=40 Score=25.32 Aligned_cols=49 Identities=18% Similarity=0.104 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy5037 80 CCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSC 128 (224)
Q Consensus 80 ~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel 128 (224)
.+++.-.-..+.-++.-+.....+|..+..-+..+...+.+++...+++
T Consensus 13 ~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l 61 (99)
T PF10046_consen 13 ESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEEL 61 (99)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666777777777777777777777777777777766554
No 317
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=71.46 E-value=1.4e+02 Score=31.38 Aligned_cols=127 Identities=22% Similarity=0.225 Sum_probs=75.6
Q ss_pred HHHHHHhhHHHHHHHHHHH-----------HHHHHHHHHHHHhhhhhhhhhhhhh---hhhH-------hHHHHHHHHHH
Q psy5037 85 RIEEILSKKESERLDLLKH-----------LKFISQETAELENNNHSLDGEMKSC---KNLL-------AESEKKVMKLE 143 (224)
Q Consensus 85 rlE~~i~~kE~E~~~Lle~-----------~~~l~~e~~~lE~r~~~lE~e~nel---~le~-------~~~~~ri~~le 143 (224)
.+...+.--.+++.+|.+. ..........|++++++++..+-.. ..++ ...+....-++
T Consensus 701 ~L~ae~~~~~kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lE 780 (984)
T COG4717 701 ELRAELELHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLE 780 (984)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHH
Confidence 3444444446666665443 2233345567788888877766532 2222 11134444555
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5037 144 ALVQDKDCSIKSLEAKLEELSHVTAQLE--TQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLAD 211 (224)
Q Consensus 144 ~~I~e~~~~i~~~e~qL~~l~~~~~~lE--~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~ 211 (224)
..|......+..+.++++.+...+..|| +.+..++-++.+++.+|...-..--.+.-.+..+..-+..
T Consensus 781 e~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~ 850 (984)
T COG4717 781 EAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRL 850 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555666666666666666665 3677788888999998888777777776666655554443
No 318
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=71.13 E-value=60 Score=27.04 Aligned_cols=55 Identities=20% Similarity=0.258 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 34 RNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEE 88 (224)
Q Consensus 34 r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~ 88 (224)
-..+..+|..++..+..+...+..|..++..+...+..++..-+.+..=|.++..
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666655555555555555555555555443
No 319
>PRK04325 hypothetical protein; Provisional
Probab=70.90 E-value=36 Score=24.42 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l 177 (224)
..++.+++-++.-|.+....+-....+|..|...+.-|-..|+.+
T Consensus 12 ~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 12 TELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334556666666666666666666666666666666666655554
No 320
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=70.72 E-value=58 Score=33.54 Aligned_cols=85 Identities=19% Similarity=0.191 Sum_probs=48.9
Q ss_pred chhhHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 6 NKRSEREAKLATTEIDRFKYELNN----LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCC 81 (224)
Q Consensus 6 ~~~~~~~~~~~~~e~~~lr~ql~~----lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~ 81 (224)
||+--...+.-+.++--.++|.|. ++.+.++|-..+..++..|+....+++.|.--|....+|+.-|..-...+..
T Consensus 471 nk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~ 550 (861)
T PF15254_consen 471 NKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQN 550 (861)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455566666666654 5555566666666666666666666666666666666666666555555555
Q ss_pred HHHHHHHHH
Q psy5037 82 EVQRIEEIL 90 (224)
Q Consensus 82 E~~rlE~~i 90 (224)
=|+++=..+
T Consensus 551 Sma~lL~dl 559 (861)
T PF15254_consen 551 SMAKLLSDL 559 (861)
T ss_pred HHHHHhhhc
Confidence 555554433
No 321
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=70.47 E-value=41 Score=24.96 Aligned_cols=63 Identities=11% Similarity=0.181 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHH
Q psy5037 45 QTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEV-QRIEEILSKKESERLDLLKHLKFI 107 (224)
Q Consensus 45 q~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~-~rlE~~i~~kE~E~~~Lle~~~~l 107 (224)
...+..+......+..-+.........++...+.+...| ..+...+..++.....|+.+++..
T Consensus 6 ~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~ 69 (127)
T smart00502 6 EELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQ 69 (127)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444 223444444555555555554443
No 322
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=70.19 E-value=61 Score=26.81 Aligned_cols=123 Identities=14% Similarity=0.215 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHhh
Q psy5037 39 SEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD-LLKHLKFISQETAELENN 117 (224)
Q Consensus 39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~-Lle~~~~l~~e~~~lE~r 117 (224)
+...+|+..|.............+......++--...+..+..-|+. +..--.. ..+.|-....=.+.+..+
T Consensus 15 R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~-------m~~gg~~f~i~~~~~~~~~r~~l~~~ 87 (158)
T PF09486_consen 15 RRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDA-------MMTGGAPFSIDEYLALRRYRDVLEER 87 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHcCCCCccHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444444444444333333333333333322 2220000 233444445555666777
Q ss_pred hhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q psy5037 118 NHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTA 168 (224)
Q Consensus 118 ~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~ 168 (224)
...++..+..+.-.+.+....+......|.-+...|+-|...+..+.....
T Consensus 88 ~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~e 138 (158)
T PF09486_consen 88 VRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAE 138 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777776665543
No 323
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.83 E-value=39 Score=24.41 Aligned_cols=50 Identities=24% Similarity=0.313 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 134 ESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYR 183 (224)
Q Consensus 134 ~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~ 183 (224)
.++.|+..|+-++.--+..|+++...+.+-...+..+-..|+-|-+.--.
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~ 54 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKD 54 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777777777777777766666666666666554433
No 324
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=69.52 E-value=46 Score=25.70 Aligned_cols=51 Identities=27% Similarity=0.251 Sum_probs=35.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 150 DCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLR 200 (224)
Q Consensus 150 ~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~ 200 (224)
-..+..++.+|..+...+..|...+..+-++...|.-+-..+|+...++..
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666667777777777777777777777777777777777777666654
No 325
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=69.42 E-value=1.3e+02 Score=30.38 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5037 57 TIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESE 96 (224)
Q Consensus 57 ~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E 96 (224)
.+..+......-++-|..++..+..++..++..+..--..
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666677777777777777777777766655443
No 326
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=68.31 E-value=39 Score=23.80 Aligned_cols=55 Identities=18% Similarity=0.349 Sum_probs=36.3
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 148 DKDCSIKSLEAKLEELSHVTAQLETQVQCCQ-EEKYRLGEELAGCQETLDTMLRQK 202 (224)
Q Consensus 148 e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk-~er~~l~~dL~~~re~~~kld~~~ 202 (224)
+....|...+..|.+...-+..|+-|++.+- ..|..+...|...+..+.++...+
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666666666777776665 677777777777777777766554
No 327
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=68.18 E-value=52 Score=27.38 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=21.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 46 TELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCE 82 (224)
Q Consensus 46 ~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E 82 (224)
........+++.++.+|+..+.+++.|+.+......|
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555666666666666666666666666555443
No 328
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=68.17 E-value=51 Score=29.18 Aligned_cols=46 Identities=11% Similarity=0.237 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 41 VRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRI 86 (224)
Q Consensus 41 ~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rl 86 (224)
.-.|+..|+.+..++..|...|+....+++.|+.+-.+.-.++++.
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666666665555553
No 329
>KOG0249|consensus
Probab=68.15 E-value=1.5e+02 Score=30.53 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGC 191 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~ 191 (224)
.++.+.+-.+.......+..+..++..+.+.+..+.-.=..+....+.|...+..+
T Consensus 201 dErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 201 DERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45555555555556666666666666666655555444444444444444444333
No 330
>KOG4657|consensus
Probab=68.00 E-value=86 Score=27.65 Aligned_cols=67 Identities=24% Similarity=0.337 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy5037 61 ELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKS 127 (224)
Q Consensus 61 ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~ne 127 (224)
.|.....+.+.|+.-+.+|-.+|.+.-.++..++.....+-..+....++++.+..+++.+..+...
T Consensus 52 ~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd 118 (246)
T KOG4657|consen 52 ALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDD 118 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7778888888899999999999999989999999998889888999999999988888887777553
No 331
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=67.87 E-value=63 Score=26.06 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy5037 24 KYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDL 100 (224)
Q Consensus 24 r~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~L 100 (224)
..++..++...+.+...++..+.++....+-+..+.......+..-..|...+....+-+..-+..|.++-.|+..|
T Consensus 18 ~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~l 94 (135)
T TIGR03495 18 SQRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDL 94 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 45556666666667777777777777777777777777777777777777777777777777777777777776654
No 332
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=67.68 E-value=1.1e+02 Score=28.65 Aligned_cols=119 Identities=16% Similarity=0.213 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHh
Q psy5037 54 HNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLA 133 (224)
Q Consensus 54 e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~ 133 (224)
=+.++...|.+...-..+|+.++..+..+|..++..|..++.-+.+...- +..--.+|+.|.+-=-.++-- .-+--
T Consensus 245 vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~---lkvaqTRL~~R~~RP~vElcr-D~~q~ 320 (384)
T PF03148_consen 245 VNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGP---LKVAQTRLENRTQRPNVELCR-DPPQY 320 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHhhHhcCCchHHHH-hhHHH
Confidence 34678888899999999999999999999999999998888877665443 344445666666533333111 22225
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 134 ESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQC 176 (224)
Q Consensus 134 ~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~ 176 (224)
++...+..+..-|..+...+...+..+..|......|+.+|..
T Consensus 321 ~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~ 363 (384)
T PF03148_consen 321 GLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAV 363 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888889999999999999999999999999988764
No 333
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=67.68 E-value=69 Score=26.46 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy5037 98 LDLLKHLKFISQETAELENN 117 (224)
Q Consensus 98 ~~Lle~~~~l~~e~~~lE~r 117 (224)
..|...+..|..+++.+..+
T Consensus 76 ~~lr~~~e~L~~eie~l~~~ 95 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQE 95 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 334
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=67.46 E-value=1.1e+02 Score=28.63 Aligned_cols=50 Identities=22% Similarity=0.316 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy5037 78 HYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKS 127 (224)
Q Consensus 78 ~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~ne 127 (224)
...+++..+|+.+...+.|+..|.-+++.+..+...-|-..+.+.-++.+
T Consensus 124 k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 124 KTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 33445555666666666666666666666666665555555554444443
No 335
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=66.92 E-value=54 Score=24.94 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l 177 (224)
+.+=+..+++++......+..++.++..+...+..+...+..+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666666666666666666666666655543
No 336
>KOG0999|consensus
Probab=66.73 E-value=1.4e+02 Score=29.79 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5037 166 VTAQLETQVQCCQEEKY 182 (224)
Q Consensus 166 ~~~~lE~EL~~lk~er~ 182 (224)
+...||+=|.-++.+|+
T Consensus 227 AekQlEEALeTlq~ERe 243 (772)
T KOG0999|consen 227 AEKQLEEALETLQQERE 243 (772)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 33445554444444443
No 337
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=65.81 E-value=1.4e+02 Score=29.28 Aligned_cols=153 Identities=10% Similarity=0.129 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5037 30 LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQ 109 (224)
Q Consensus 30 lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~ 109 (224)
+-...+.+..+|++|-..+ .+...+...|+.+......|+...-.|.+=|..++ +...+-+..+..+.+
T Consensus 269 i~~~i~~lk~~n~~l~e~i----~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk-------~K~~~~~g~l~kl~~ 337 (622)
T COG5185 269 INTDIANLKTQNDNLYEKI----QEAMKISQKIKTLREKWRALKSDSNKYENYVNAMK-------QKSQEWPGKLEKLKS 337 (622)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------HHHHhcchHHHHHHH
Confidence 4455555555555444333 33344555555555555555555544444444443 333344444455555
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhHhH--H-HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 110 ETAELENNNHSLDGEMKSCKNLLAE--S-EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGE 186 (224)
Q Consensus 110 e~~~lE~r~~~lE~e~nel~le~~~--~-~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~ 186 (224)
++...|..+..|.+.+.+++-.+.. + -+.....-.+-..+-..+.-...++++|++.|..=+-+.++--+.-.....
T Consensus 338 eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~ 417 (622)
T COG5185 338 EIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLR 417 (622)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555544411 0 111111122222333334445566666666666555555554444444444
Q ss_pred HHHHHHH
Q psy5037 187 ELAGCQE 193 (224)
Q Consensus 187 dL~~~re 193 (224)
++.++..
T Consensus 418 ~~~sl~~ 424 (622)
T COG5185 418 QYDSLIQ 424 (622)
T ss_pred HHHHHHH
Confidence 4444433
No 338
>PLN02678 seryl-tRNA synthetase
Probab=65.13 E-value=51 Score=31.70 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037 39 SEVRRLQTELYDMNQHNMTIQQELEASR---TEAEDVKLQLQHYCCEVQRIEEILSKKESERLD 99 (224)
Q Consensus 39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e---~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~ 99 (224)
.+-+.++..++.+..+...+.+.|.... ....++..+...+..++..++..+...+.++..
T Consensus 40 ~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 40 KEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443211 122333333444444444444444444444433
No 339
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=65.02 E-value=94 Score=26.99 Aligned_cols=106 Identities=14% Similarity=0.178 Sum_probs=48.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy5037 46 TELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEV-QRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGE 124 (224)
Q Consensus 46 ~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~-~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e 124 (224)
..+..+...+..|...|..--....+....++.+.... ..+... .+.. +...+..+..-++.|..++..++..
T Consensus 34 ~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~---v~~~---~~~~~~~~~~~l~~L~~ri~~L~~~ 107 (247)
T PF06705_consen 34 QRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQER---VENQ---ISEKQEQLQSRLDSLNDRIEALEEE 107 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555554444444444444433321 111111 1111 3344445555555566666666666
Q ss_pred hhhhhhhH-hHHHHHHHHHHHHHHhHHhhHHHHH
Q psy5037 125 MKSCKNLL-AESEKKVMKLEALVQDKDCSIKSLE 157 (224)
Q Consensus 125 ~nel~le~-~~~~~ri~~le~~I~e~~~~i~~~e 157 (224)
++..+..+ ..+.....++...|.++...+....
T Consensus 108 i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er 141 (247)
T PF06705_consen 108 IQEEKEERPQDIEELNQELVRELNELQEAFENER 141 (247)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555 2234444444444444444444433
No 340
>PRK11519 tyrosine kinase; Provisional
Probab=64.72 E-value=1.6e+02 Score=29.70 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy5037 59 QQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKK 93 (224)
Q Consensus 59 ~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~k 93 (224)
..+-.....-++=|+.++.....++...+..+..-
T Consensus 259 ~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~f 293 (719)
T PRK11519 259 ERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAF 293 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666666666665555544
No 341
>PRK02793 phi X174 lysis protein; Provisional
Probab=64.57 E-value=49 Score=23.59 Aligned_cols=42 Identities=12% Similarity=0.253 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l 177 (224)
+.+++-++.-|.+....+-....+|..|...+..|-..|..+
T Consensus 14 E~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 14 ESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555555555555555555555555443
No 342
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=64.57 E-value=80 Score=26.05 Aligned_cols=52 Identities=19% Similarity=0.232 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 134 ESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLG 185 (224)
Q Consensus 134 ~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~ 185 (224)
.+..++..++.....+......+-.+.+.+......|-.++..+++.-..+.
T Consensus 93 ~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l 144 (158)
T PF09744_consen 93 DLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELL 144 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666666666666677777777777666766666544443
No 343
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=64.30 E-value=45 Score=31.62 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037 72 VKLQLQHYCCEVQRIEEILSKKESERLD 99 (224)
Q Consensus 72 Lk~~~~~~~~E~~rlE~~i~~kE~E~~~ 99 (224)
+..+......++..++..+...+.++..
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 344
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=63.90 E-value=95 Score=26.67 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5037 65 SRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKF 106 (224)
Q Consensus 65 ~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~ 106 (224)
.-.++..|+..-.++++.+-.++..+..++.++..+..+...
T Consensus 173 ~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 173 AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777777666666555443
No 345
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=63.87 E-value=1.2e+02 Score=27.79 Aligned_cols=70 Identities=14% Similarity=0.281 Sum_probs=36.8
Q ss_pred HhHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy5037 15 LATTEIDRFKYELNNLE------------------LERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQL 76 (224)
Q Consensus 15 ~~~~e~~~lr~ql~~lr------------------~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~ 76 (224)
-.++||.|.|--|.++- +.++++..=-..+-.+++.+...+..+...|...+.....|+.++
T Consensus 88 rLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~el 167 (305)
T PF14915_consen 88 RLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIEL 167 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777776532 222222222223333455555555666666666666666666666
Q ss_pred HHHHHHHH
Q psy5037 77 QHYCCEVQ 84 (224)
Q Consensus 77 ~~~~~E~~ 84 (224)
|....-+.
T Consensus 168 h~trdaLr 175 (305)
T PF14915_consen 168 HHTRDALR 175 (305)
T ss_pred HHHHHHHH
Confidence 55554443
No 346
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=63.69 E-value=1.1e+02 Score=27.15 Aligned_cols=89 Identities=10% Similarity=0.270 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------------------------------
Q psy5037 21 DRFKYELNNLELERNRAQSEVRRLQTELYDMNQHN--------------------------------------------- 55 (224)
Q Consensus 21 ~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~--------------------------------------------- 55 (224)
..|..++..+.....+...=|.+|+.||..+....
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 46778888888888888888999999998888540
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5037 56 MTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQ 109 (224)
Q Consensus 56 ~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~ 109 (224)
..+...=+.-.....+|+.++......+..+...+..+.+.+..|=++.+-+.+
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 122333344455566666666666666666666666666666666666666543
No 347
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=63.11 E-value=88 Score=27.66 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~ 179 (224)
...+.|+..|+.++......+..+..++..|+.-=..|-+.++=++.
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55689999999999999999999999999999988888888776654
No 348
>PHA01750 hypothetical protein
Probab=62.66 E-value=24 Score=25.18 Aligned_cols=26 Identities=19% Similarity=0.534 Sum_probs=11.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 15 LATTEIDRFKYELNNLELERNRAQSE 40 (224)
Q Consensus 15 ~~~~e~~~lr~ql~~lr~~r~~a~~E 40 (224)
++..|++.|+-|+.+++.+.+++.++
T Consensus 39 IV~~ELdNL~~ei~~~kikqDnl~~q 64 (75)
T PHA01750 39 IVNSELDNLKTEIEELKIKQDELSRQ 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444444444444444444443333
No 349
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=62.44 E-value=37 Score=23.52 Aligned_cols=55 Identities=22% Similarity=0.386 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 37 AQSEVRRLQTELYDMNQHNMTIQQELEA-------SRTEAEDVKLQLQHYCCEVQRIEEILS 91 (224)
Q Consensus 37 a~~E~~rlq~dL~~~~~e~~~l~~ele~-------~e~eleeLk~~~~~~~~E~~rlE~~i~ 91 (224)
..+++.||+.+++.+...+..+...|.. -..=++.-+.++..|..++.++...|.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666555542 111233344445555555555554443
No 350
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=62.08 E-value=76 Score=24.94 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDM 51 (224)
Q Consensus 19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~ 51 (224)
++..|..++..++...+.+...+..+...+.++
T Consensus 7 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~ 39 (140)
T PRK03947 7 ELEELAAQLQALQAQIEALQQQLEELQASINEL 39 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 351
>PRK00736 hypothetical protein; Provisional
Probab=62.05 E-value=53 Score=23.14 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l 177 (224)
..++.+++-++.-|.+....+-....+|..|+..+..|-..|...
T Consensus 8 ~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 8 TELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334566666666666666666666666666666666666666554
No 352
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=61.95 E-value=53 Score=23.07 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ 178 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk 178 (224)
+.+++-++.-|.+....+-....+|..|...+..|...|+.+.
T Consensus 10 E~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 10 EIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444555555555555555555555555555555555555443
No 353
>KOG4809|consensus
Probab=61.88 E-value=1.8e+02 Score=29.07 Aligned_cols=132 Identities=20% Similarity=0.229 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Q psy5037 67 TEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALV 146 (224)
Q Consensus 67 ~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I 146 (224)
.+|+..+.+++++..-|+.+.+.+..++.-.-+|.+++.+|.+- +-..++++.++-+-++.-.+++..++..+
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~-------glk~ds~Lk~leIalEqkkEec~kme~qL 403 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASA-------GLKRDSKLKSLEIALEQKKEECSKMEAQL 403 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555444 44555555555555555555665665555
Q ss_pred HhHHhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 147 QDKDCSIK------SLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEEL 205 (224)
Q Consensus 147 ~e~~~~i~------~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l 205 (224)
...-.... ++-.+|-.+.......+.++...+.+-..+.+=+..+..+...-+-.+-.+
T Consensus 404 kkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiael 468 (654)
T KOG4809|consen 404 KKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAEL 468 (654)
T ss_pred HHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhc
Confidence 54443332 234455556666666666666666666666666665555544444333333
No 354
>PRK00295 hypothetical protein; Provisional
Probab=61.82 E-value=54 Score=23.12 Aligned_cols=44 Identities=16% Similarity=0.084 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 134 ESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 134 ~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l 177 (224)
.++.+++-++.-|.+....+-....+|..|...+..|-..|+.+
T Consensus 9 ~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 9 ELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555555666665555555555544
No 355
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=61.73 E-value=1.4e+02 Score=29.01 Aligned_cols=47 Identities=19% Similarity=0.262 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 34 RNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYC 80 (224)
Q Consensus 34 r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~ 80 (224)
.-.+..+++.+..++..+..+|+.+..+-+.+.+.-..+..+++.-+
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av 107 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAV 107 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34566777777777888888887777777777776666666665543
No 356
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=61.32 E-value=68 Score=30.35 Aligned_cols=61 Identities=18% Similarity=0.347 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037 39 SEVRRLQTELYDMNQHNMTIQQELEASRT---E-AEDVKLQLQHYCCEVQRIEEILSKKESERLD 99 (224)
Q Consensus 39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~---e-leeLk~~~~~~~~E~~rlE~~i~~kE~E~~~ 99 (224)
.+-+.++..++.+..+...+.++|..... . ...++.+......++..++..+..++.++..
T Consensus 37 ~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 37 DERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433211 1 3344444444444444444444444444444
No 357
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=61.31 E-value=53 Score=22.92 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH-----hHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLL-----AESEKKVMKLEALVQDKDCSIKSLEAKL 160 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~-----~~~~~ri~~le~~I~e~~~~i~~~e~qL 160 (224)
++.++..+..++.....++..+......+ ... ..+..++..+...-......+..+...|
T Consensus 39 ~~~~~~~~~~ei~~~~~~l~~l~~~~~~L-~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L 103 (105)
T PF00435_consen 39 QLKKHKELQEEIESRQERLESLNEQAQQL-IDSGPEDSDEIQEKLEELNQRWEALCELVEERRQKL 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 55566666666666666666555554444 222 2234444444444444444444444333
No 358
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=61.09 E-value=39 Score=22.03 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHH
Q psy5037 99 DLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLE 143 (224)
Q Consensus 99 ~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le 143 (224)
.|.++|..|..+|..+|.+...-+..+..++.++..+..+|..+.
T Consensus 3 ~L~~~h~~Ld~~I~~~e~~~~~~d~~l~~LKk~kL~LKDei~~ll 47 (49)
T PF04325_consen 3 RLFEEHHELDKEIHRLEKRPEPDDEELERLKKEKLRLKDEIYRLL 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHTT--S-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888888876666666777777766666665543
No 359
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=60.80 E-value=1.4e+02 Score=27.71 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=9.0
Q ss_pred HHHHHHHHHhhhhhhhhhhhhh
Q psy5037 107 ISQETAELENNNHSLDGEMKSC 128 (224)
Q Consensus 107 l~~e~~~lE~r~~~lE~e~nel 128 (224)
||.++..+=..+..+++....+
T Consensus 327 lH~~a~~~~~~l~~le~~q~~l 348 (388)
T PF04912_consen 327 LHEEAAEFSQTLSELESQQSDL 348 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 360
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=60.75 E-value=1.6e+02 Score=28.36 Aligned_cols=109 Identities=18% Similarity=0.142 Sum_probs=81.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----Hhhhhhhhh
Q psy5037 48 LYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAEL----ENNNHSLDG 123 (224)
Q Consensus 48 L~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~l----E~r~~~lE~ 123 (224)
+.+..........++.+...++.+++-.++.-..++..||+.+.=|++|-.=....++.++-|++.| -.+...+|-
T Consensus 317 ~kka~~~~~~~~~~l~~k~k~~~e~~~~~~~kk~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~aK~~k~EE 396 (446)
T PF07227_consen 317 LKKARLALETCDRELEDKAKEVAELQFERQRKKPQIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIALAKSEKIEE 396 (446)
T ss_pred hhhhhhhhhhhhhHHHhhhhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5556666777778888888999999999999999999999999999999888888888888888876 456666776
Q ss_pred hhhhhhhhH--hHHHHHHHHHHHHHHhHHhhHHHH
Q psy5037 124 EMKSCKNLL--AESEKKVMKLEALVQDKDCSIKSL 156 (224)
Q Consensus 124 e~nel~le~--~~~~~ri~~le~~I~e~~~~i~~~ 156 (224)
+.++--+.+ ..++++..-+=++|.-.+.....|
T Consensus 397 EYas~~~kl~l~eaee~r~~~~eelk~~e~s~~~~ 431 (446)
T PF07227_consen 397 EYASRYLKLRLNEAEEERKKKFEELKVLENSHRDY 431 (446)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccc
Confidence 666643332 555555555555555555555555
No 361
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=60.40 E-value=79 Score=24.59 Aligned_cols=49 Identities=24% Similarity=0.189 Sum_probs=32.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 150 DCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTM 198 (224)
Q Consensus 150 ~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kl 198 (224)
-..+..++.+|..+...+..|...+..+-++...|.-+-..+|+...++
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666666666666666666666666666666655
No 362
>PRK00846 hypothetical protein; Provisional
Probab=60.26 E-value=64 Score=23.53 Aligned_cols=43 Identities=7% Similarity=0.033 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ 178 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk 178 (224)
+.+++-.+.-|.+....+-....+|..|+..+.-|-+.|+.+.
T Consensus 19 E~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 19 ETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555555555555666666666555555555543
No 363
>KOG2751|consensus
Probab=59.68 E-value=1.7e+02 Score=28.18 Aligned_cols=107 Identities=23% Similarity=0.286 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy5037 32 LERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQET 111 (224)
Q Consensus 32 ~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~ 111 (224)
...+++.+++..++.=++.+.+.++.+ ...++..+.+.+..+=.++...+...+.+..+|-..+..+....
T Consensus 150 ~e~~~~~~e~~~Y~~~l~~Le~~~~~~---------~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~ 220 (447)
T KOG2751|consen 150 KEVEDAEDEVDTYKACLQRLEQQNQDV---------SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKA 220 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666555555555554 23333333344444444455555555555555555555555555
Q ss_pred HHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Q psy5037 112 AELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQ 147 (224)
Q Consensus 112 ~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~ 147 (224)
.++...-...=.+.+......-.-+..+++++.+|.
T Consensus 221 ~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~ 256 (447)
T KOG2751|consen 221 ERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIE 256 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Confidence 555555544444555554444444444444444443
No 364
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=59.55 E-value=2.6e+02 Score=30.23 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhh
Q psy5037 107 ISQETAELENNNHSLDGEMKSC 128 (224)
Q Consensus 107 l~~e~~~lE~r~~~lE~e~nel 128 (224)
+...+..++..++.+...+|..
T Consensus 213 ~~~~~~~l~~~~~~Lq~~in~k 234 (1109)
T PRK10929 213 AKKRSQQLDAYLQALRNQLNSQ 234 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443
No 365
>PF15294 Leu_zip: Leucine zipper
Probab=59.32 E-value=1.4e+02 Score=27.05 Aligned_cols=12 Identities=25% Similarity=0.747 Sum_probs=4.3
Q ss_pred hhhhhhhhhhhh
Q psy5037 117 NNHSLDGEMKSC 128 (224)
Q Consensus 117 r~~~lE~e~nel 128 (224)
....+++.+..+
T Consensus 216 ~~k~L~e~L~~~ 227 (278)
T PF15294_consen 216 QQKALEETLQSC 227 (278)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 366
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=59.01 E-value=6.4 Score=30.13 Aligned_cols=47 Identities=30% Similarity=0.422 Sum_probs=26.1
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037 126 KSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLET 172 (224)
Q Consensus 126 nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~ 172 (224)
+..+.+...+..+...++.++.+....+..+..||..|...+..+..
T Consensus 40 a~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~~~ 86 (100)
T PF06428_consen 40 ADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMESMES 86 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 33344555555666666666666666666666666666655555443
No 367
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=58.59 E-value=66 Score=25.65 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5037 154 KSLEAKLEELSHVTAQLE 171 (224)
Q Consensus 154 ~~~e~qL~~l~~~~~~lE 171 (224)
..|+..+..+.+++++||
T Consensus 122 ~~~e~~~~~~~~riaEle 139 (139)
T PF13935_consen 122 EAYEGEIADYAKRIAELE 139 (139)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 455666666666666553
No 368
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=58.34 E-value=1.6e+02 Score=27.36 Aligned_cols=77 Identities=25% Similarity=0.332 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q psy5037 137 KKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGC--------QETLDTMLRQKEELRLQ 208 (224)
Q Consensus 137 ~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~--------re~~~kld~~~e~l~~q 208 (224)
+...++..+-.+.+.....|...++++.+....--..+...+..-..+...|..+ .+.+++++..+......
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~ 83 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQ 83 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhh
Confidence 4445556666666666666666666666665555555555555555555555554 45555555555555554
Q ss_pred HhchH
Q psy5037 209 LADTE 213 (224)
Q Consensus 209 L~~~~ 213 (224)
+.+.+
T Consensus 84 l~DmE 88 (330)
T PF07851_consen 84 LFDME 88 (330)
T ss_pred HHHHH
Confidence 44433
No 369
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=58.28 E-value=62 Score=22.73 Aligned_cols=10 Identities=10% Similarity=0.405 Sum_probs=3.5
Q ss_pred HHHHHHHHHh
Q psy5037 139 VMKLEALVQD 148 (224)
Q Consensus 139 i~~le~~I~e 148 (224)
+..++.++..
T Consensus 8 l~~ie~~l~~ 17 (71)
T PF10779_consen 8 LNRIETKLDN 17 (71)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 370
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=58.22 E-value=76 Score=23.70 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037 32 LERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSK 92 (224)
Q Consensus 32 ~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~ 92 (224)
.........+..+..++..+......+..++.......-.+.........+|..+...++.
T Consensus 10 ~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 10 QAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444444444444444444444444433
No 371
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=57.79 E-value=83 Score=24.02 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5037 96 ERLDLLKHLKFISQETAEL 114 (224)
Q Consensus 96 E~~~Lle~~~~l~~e~~~l 114 (224)
++..|..++..|..++..+
T Consensus 82 ei~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 372
>PRK10869 recombination and repair protein; Provisional
Probab=57.53 E-value=2e+02 Score=28.29 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=26.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 14 KLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQ 53 (224)
Q Consensus 14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~ 53 (224)
+.+-.+...++++|..+........+++.-++..++++..
T Consensus 160 ~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~ 199 (553)
T PRK10869 160 RAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNE 199 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 3444666667777777777777777777777777766643
No 373
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=57.52 E-value=83 Score=23.95 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 70 EDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELE 115 (224)
Q Consensus 70 eeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE 115 (224)
.+|+.++|=+-.|-.=+...|+.++.++..|+.++.+.....-.+.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d 49 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLD 49 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4667777777777777777777777777777776666666554333
No 374
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=56.68 E-value=1.6e+02 Score=26.94 Aligned_cols=53 Identities=28% Similarity=0.374 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEEL 188 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL 188 (224)
+.++..++..+......+...+..|..+...+..|..++.....++..+..++
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~ 272 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEI 272 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555554444444444444444444444443
No 375
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=56.55 E-value=63 Score=22.23 Aligned_cols=38 Identities=11% Similarity=0.224 Sum_probs=15.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 51 MNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEE 88 (224)
Q Consensus 51 ~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~ 88 (224)
+...++.|..++..+..++..|+..++....|-.|.-.
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~ 45 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQ 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444433333
No 376
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=56.19 E-value=1.5e+02 Score=26.64 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHH
Q psy5037 28 NNLELERNRAQSEVRRL----QTELYDMNQHNMTIQQELEASRTE 68 (224)
Q Consensus 28 ~~lr~~r~~a~~E~~rl----q~dL~~~~~e~~~l~~ele~~e~e 68 (224)
+.+.+.+-.+.+..+-| -+||.++...+..|-.++.+.+..
T Consensus 74 e~~are~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~ 118 (271)
T PF13805_consen 74 ESAARERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQ 118 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433 234444444444444444444433
No 377
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=55.93 E-value=1.2e+02 Score=26.83 Aligned_cols=64 Identities=9% Similarity=0.133 Sum_probs=48.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 53 QHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELEN 116 (224)
Q Consensus 53 ~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~ 116 (224)
.++..++..+.....-+-+|..++.....||.+|.+.|....-++..|.++-+.+-.+++++-+
T Consensus 40 ~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 40 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555666678888888888999999999999999998888888877777776544
No 378
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=55.86 E-value=1e+02 Score=24.43 Aligned_cols=65 Identities=23% Similarity=0.294 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5037 41 VRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLK 105 (224)
Q Consensus 41 ~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~ 105 (224)
+..+...++.+...+..+....-..+.++++++.++.....++..+......+......+...|.
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s 93 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYS 93 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 55666666666777777777666667777777777777777777777777777776666544443
No 379
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=55.06 E-value=1.4e+02 Score=25.65 Aligned_cols=84 Identities=23% Similarity=0.266 Sum_probs=64.8
Q ss_pred hhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 128 CKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRL 207 (224)
Q Consensus 128 l~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~ 207 (224)
..+.+..++-.++-+++.|...+.....+...|.-.+.....+-..-+..+.+-..|..+-.+++.-.+.+...+..|+.
T Consensus 103 ~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 103 VEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455667777888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred HHhc
Q psy5037 208 QLAD 211 (224)
Q Consensus 208 qL~~ 211 (224)
+.+.
T Consensus 183 q~~~ 186 (192)
T PF11180_consen 183 QANE 186 (192)
T ss_pred HhcC
Confidence 7664
No 380
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=54.49 E-value=73 Score=22.36 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 39 SEVRRLQTELYDMNQHNMTIQQELEASR-TEAEDVKLQLQHYCCEVQRIEEIL 90 (224)
Q Consensus 39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e-~eleeLk~~~~~~~~E~~rlE~~i 90 (224)
.-++.++..|+.+..-+..+.-++...- .....+..++..|.+++..+...+
T Consensus 25 ~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 25 SLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444443 455556666666666666655443
No 381
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=54.26 E-value=64 Score=24.64 Aligned_cols=8 Identities=25% Similarity=0.011 Sum_probs=4.1
Q ss_pred HHHHHHHH
Q psy5037 78 HYCCEVQR 85 (224)
Q Consensus 78 ~~~~E~~r 85 (224)
+|..+++|
T Consensus 65 dyiEe~AR 72 (105)
T PRK00888 65 EAIEERAR 72 (105)
T ss_pred HHHHHHHH
Confidence 45555544
No 382
>KOG0804|consensus
Probab=53.96 E-value=2.2e+02 Score=27.69 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy5037 68 EAEDVKLQLQHYCCEVQRIEEILSKKESER 97 (224)
Q Consensus 68 eleeLk~~~~~~~~E~~rlE~~i~~kE~E~ 97 (224)
+++.++........++..++...+..+++.
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~k 377 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEK 377 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 334444444444444444444433333333
No 383
>KOG0288|consensus
Probab=53.85 E-value=2.1e+02 Score=27.50 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 30 LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQR 85 (224)
Q Consensus 30 lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~r 85 (224)
++.++.+..+..+++..++.-...+-.++...+...+.++..|+.+......+.-+
T Consensus 18 ~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 18 LNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566666666666666666666666666666666666555555555444
No 384
>PRK14011 prefoldin subunit alpha; Provisional
Probab=53.38 E-value=1.2e+02 Score=24.58 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQC 176 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~ 176 (224)
.+..+=+..++++|......+..+...|..+...+..+..+|..
T Consensus 84 k~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~ 127 (144)
T PRK14011 84 KDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEK 127 (144)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466667777777777777777777777777777777666543
No 385
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=53.13 E-value=52 Score=28.72 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy5037 66 RTEAEDVKLQLQHYCCEVQRIEEILSKKESERL---DLLKHLKFISQETAELENNNHSLDGE 124 (224)
Q Consensus 66 e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~---~Lle~~~~l~~e~~~lE~r~~~lE~e 124 (224)
-.+.-++..++.....+..++.+.+..- .... .+..++..++.+++.+++++..++..
T Consensus 131 T~~y~D~~arl~~l~~~~~rl~~ll~ka-~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 131 TEQYVDLEARLKNLEAEEERLLELLEKA-KTVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444421 1222 23444444444555555544444443
No 386
>KOG4403|consensus
Probab=51.68 E-value=2.4e+02 Score=27.44 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 172 TQVQCCQEEKYRLGEELAGCQETLDTMLR 200 (224)
Q Consensus 172 ~EL~~lk~er~~l~~dL~~~re~~~kld~ 200 (224)
-|.+-+...|......|..+++.|+++..
T Consensus 347 ~E~q~~~kkrqnaekql~~Ake~~eklkK 375 (575)
T KOG4403|consen 347 VEVQYYNKKRQNAEKQLKEAKEMAEKLKK 375 (575)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666654
No 387
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=51.66 E-value=4.9 Score=39.18 Aligned_cols=58 Identities=12% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 31 ELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEE 88 (224)
Q Consensus 31 r~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~ 88 (224)
...++...+++..|+..|-.+..-..=|-+-|+-+...++.|..+++.|..|-.....
T Consensus 427 ~~~~~~~~~ei~~lr~~iQ~l~~s~~PLgk~~d~iqEDid~M~~El~~W~~e~~~~~~ 484 (539)
T PF10243_consen 427 KKERESVEKEIEKLRESIQTLCRSANPLGKLMDYIQEDIDSMQKELEMWRSEYRQHAE 484 (539)
T ss_dssp ----------------------------------------------------------
T ss_pred hccchhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666666666666666666666666666666666665554443
No 388
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=51.64 E-value=99 Score=23.04 Aligned_cols=49 Identities=12% Similarity=0.164 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy5037 75 QLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDG 123 (224)
Q Consensus 75 ~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~ 123 (224)
++..+.++|..+.+.++........+...+....+++.+--.|+.+.++
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~~ 73 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQDY 73 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3444445555555555555555555666666666666666666666654
No 389
>PF15456 Uds1: Up-regulated During Septation
Probab=51.43 E-value=1.2e+02 Score=23.98 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 137 KKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC-----------QEEKYRLGEELAGCQETLDTMLRQKEEL 205 (224)
Q Consensus 137 ~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l-----------k~er~~l~~dL~~~re~~~kld~~~e~l 205 (224)
+.+.++.+++.-....++.....+. +...+...-.-|..+ .+--....++|......|+.+...+..+
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444555554444444444444444 333333333333333 2333445667777777777777777777
Q ss_pred HHHHhchHH
Q psy5037 206 RLQLADTEN 214 (224)
Q Consensus 206 ~~qL~~~~~ 214 (224)
..++..+..
T Consensus 101 e~R~~~~~~ 109 (124)
T PF15456_consen 101 ENRLAEVRQ 109 (124)
T ss_pred HHHHHHHHH
Confidence 777666544
No 390
>PF14992 TMCO5: TMCO5 family
Probab=51.16 E-value=1.9e+02 Score=26.20 Aligned_cols=31 Identities=10% Similarity=0.272 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy5037 44 LQTELYDMNQHNMTIQQELEASRTEAEDVKL 74 (224)
Q Consensus 44 lq~dL~~~~~e~~~l~~ele~~e~eleeLk~ 74 (224)
+..|+-.+...|+.+=.+|...+..+..|..
T Consensus 9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~ 39 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLER 39 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555554444444433
No 391
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=50.80 E-value=96 Score=22.65 Aligned_cols=69 Identities=22% Similarity=0.294 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037 21 DRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSK 92 (224)
Q Consensus 21 ~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~ 92 (224)
+.+|..++++......+......+...+..-..+.+.+...+-+++..=..|| +.|-.||.+|...|..
T Consensus 7 d~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK---~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 7 DAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK---QQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 33444444444444444444455555555555555555555555555555554 3567777777766654
No 392
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=50.57 E-value=2.8e+02 Score=28.04 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 184 LGEELAGCQETLDTMLRQKEELRLQ 208 (224)
Q Consensus 184 l~~dL~~~re~~~kld~~~e~l~~q 208 (224)
+..+....+.....+-.+.+.+...
T Consensus 375 L~R~~~~~~~lY~~lL~r~~e~~i~ 399 (726)
T PRK09841 375 LSRDVEAGRAVYLQLLNRQQELSIS 399 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555544444444433
No 393
>KOG2264|consensus
Probab=50.33 E-value=2.2e+02 Score=28.80 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=30.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037 47 ELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD 99 (224)
Q Consensus 47 dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~ 99 (224)
+|-+.....+.++.+|++....+++++..+-.-..|+.+++..|+..+.-..+
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~E 146 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEE 146 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 34444445555555666666666666666666666666666666555544444
No 394
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=50.16 E-value=1.2e+02 Score=23.44 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=44.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 47 ELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAEL 114 (224)
Q Consensus 47 dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~l 114 (224)
..+.+..-+..|.+-.-+-+.--..|+..++.....+.+++..++.+.=-+..|+.+...+..+++..
T Consensus 6 eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555556666677777777777777777777777777777777777777666643
No 395
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=49.93 E-value=1.3e+02 Score=23.94 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy5037 60 QELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKES 95 (224)
Q Consensus 60 ~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~ 95 (224)
..|......+++...-......+|..+.+.++....
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~ 103 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGD 103 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344444444444444444444444444444443333
No 396
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=49.79 E-value=37 Score=28.37 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037 69 AEDVKLQLQHYCCEVQRIEEILSK 92 (224)
Q Consensus 69 leeLk~~~~~~~~E~~rlE~~i~~ 92 (224)
+++|+.++...+.+=+=||..|+.
T Consensus 2 LeD~EsklN~AIERnalLE~ELdE 25 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDE 25 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 567777777777777777777733
No 397
>COG5570 Uncharacterized small protein [Function unknown]
Probab=49.44 E-value=42 Score=22.88 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 157 EAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELR 206 (224)
Q Consensus 157 e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~ 206 (224)
++-|.+|.+.-..|+.++.+.-+-=..=-..+.+++...-.+...++.|.
T Consensus 4 eshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLk 53 (57)
T COG5570 4 ESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLK 53 (57)
T ss_pred HHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444445555444443333333334444444444444444443
No 398
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=49.28 E-value=2.4e+02 Score=26.79 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHH-hHHhhHHHHHHHHHHHHHHHHHHH
Q psy5037 133 AESEKKVMKLEALVQ-DKDCSIKSLEAKLEELSHVTAQLE 171 (224)
Q Consensus 133 ~~~~~ri~~le~~I~-e~~~~i~~~e~qL~~l~~~~~~lE 171 (224)
..+++..++.+++++ +......++..-|+....+++.||
T Consensus 279 ~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 279 YNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444555555555444 445555666666666666666666
No 399
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=49.10 E-value=2.7e+02 Score=27.43 Aligned_cols=183 Identities=15% Similarity=0.190 Sum_probs=101.0
Q ss_pred HHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---------------HHHHHHHHHHHH
Q psy5037 14 KLATTEIDRFKYELNN----LELERNRAQSEVRRLQTELYDMNQHNMTIQQEL---------------EASRTEAEDVKL 74 (224)
Q Consensus 14 ~~~~~e~~~lr~ql~~----lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~el---------------e~~e~eleeLk~ 74 (224)
+.++-.+..|+-|.+. .....+......+.+..-+..++.-.+.....| .-....++++..
T Consensus 236 ~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~ 315 (531)
T PF15450_consen 236 ELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKEKLEESKAEELAT 315 (531)
T ss_pred HHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhHHHHHH
Confidence 5667777777777773 222233333333333333333333333332222 234566788888
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh----hhhhHhHHHHHHHHHHHHHHh
Q psy5037 75 QLQHYCCEVQRIEEILSKKESE--RLDLLKHLKFISQETAELENNNHSLDGEMKS----CKNLLAESEKKVMKLEALVQD 148 (224)
Q Consensus 75 ~~~~~~~E~~rlE~~i~~kE~E--~~~Lle~~~~l~~e~~~lE~r~~~lE~e~ne----l~le~~~~~~ri~~le~~I~e 148 (224)
.++.|.+=|... +.++.++.. .+-|-+...-+..-+..+-..+-+|++.+.. +-+....+..|+.++..++..
T Consensus 316 ~L~~~lea~q~a-gkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~ 394 (531)
T PF15450_consen 316 KLQENLEAMQLA-GKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWES 394 (531)
T ss_pred HHHHHHHHHHHh-hhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 888888887766 555444422 1222222222222333333333333333322 333345556666665543332
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 149 KDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKE 203 (224)
Q Consensus 149 ~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e 203 (224)
.....+..+..=-..++.-+.++++..+.+-.+|.++-..|+-..+..+
T Consensus 395 ------~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d 443 (531)
T PF15450_consen 395 ------DERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSD 443 (531)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhh
Confidence 2234566677777788888899999999999999999999987665443
No 400
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=48.93 E-value=1.6e+02 Score=29.27 Aligned_cols=31 Identities=13% Similarity=0.004 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy5037 96 ERLDLLKHLKFISQETAELENNNHSLDGEMK 126 (224)
Q Consensus 96 E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~n 126 (224)
...++..++..+..+++.+..++..+...+.
T Consensus 599 ~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~ 629 (638)
T PRK10636 599 ELTACLQQQASAKSGLEECEMAWLEAQEQLE 629 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554433
No 401
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=48.71 E-value=1.1e+02 Score=22.86 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy5037 22 RFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE 94 (224)
Q Consensus 22 ~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE 94 (224)
-+.-+|.+....-.=+.+-|.........+..-...+...++.+...-..++ .|...|..++..++.+|
T Consensus 11 ~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~----~~l~~Id~Ie~~V~~LE 79 (99)
T PF10046_consen 11 YVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQ----PYLQQIDQIEEQVTELE 79 (99)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666666666666666555544443 33333444443333333
No 402
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=48.38 E-value=1.6e+02 Score=24.42 Aligned_cols=96 Identities=8% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHH
Q psy5037 26 ELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESE-RLDLLKHL 104 (224)
Q Consensus 26 ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E-~~~Lle~~ 104 (224)
+||++...-++...++.+....+.-...-.+.+..+|+.++..+.++.....-+..+..=+-+.....-.= ..+|-++.
T Consensus 45 ~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV 124 (157)
T COG3352 45 VIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQV 124 (157)
T ss_pred HHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhh
Q psy5037 105 KFISQETAELENNNHSL 121 (224)
Q Consensus 105 ~~l~~e~~~lE~r~~~l 121 (224)
..+.......=.-++.+
T Consensus 125 ~el~~i~emv~~d~~~l 141 (157)
T COG3352 125 NELKMIVEMVIKDLREL 141 (157)
T ss_pred HHHHHHHHHHhccchhh
No 403
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=48.30 E-value=1.3e+02 Score=25.84 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhc
Q psy5037 180 EKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKES 220 (224)
Q Consensus 180 er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l~ 220 (224)
-+...-.+|..+++.++.+..+++.|..-|.+.+....+|.
T Consensus 154 ~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 154 GRSKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455677888999999999999999999888887777663
No 404
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=48.15 E-value=54 Score=22.72 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy5037 69 AEDVKLQLQHYCCEVQRIEEILSKKESERL 98 (224)
Q Consensus 69 leeLk~~~~~~~~E~~rlE~~i~~kE~E~~ 98 (224)
+++|...+..+.+||.|++..|..|..-+.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r~ 52 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSASRA 52 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778888888888888877765443
No 405
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=48.12 E-value=1.7e+02 Score=24.73 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=25.6
Q ss_pred hhHHHHHHhHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHH
Q psy5037 8 RSEREAKLATTEIDRFKYELNN----------------LELERNRAQSEVRRLQTELYD 50 (224)
Q Consensus 8 ~~~~~~~~~~~e~~~lr~ql~~----------------lr~~r~~a~~E~~rlq~dL~~ 50 (224)
++.-++..+.-+++.+|.+|.- +..++..+.-+|.+|+..+..
T Consensus 72 k~~~~a~~~Kse~~~~r~~L~l~FI~sf~~Y~~leL~s~~~ei~~L~~kI~~L~~~in~ 130 (181)
T PF04645_consen 72 KSNAEARNAKSELEMERSNLELSFIDSFNQYKNLELKSIKKEIEILRLKISSLQKEINK 130 (181)
T ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566677777777777777652 444555555555555555443
No 406
>PLN02320 seryl-tRNA synthetase
Probab=48.08 E-value=1.3e+02 Score=29.50 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037 39 SEVRRLQTELYDMNQHNMTIQQELEASR--TEAEDVKLQLQHYCCEVQRIEEILSKKESERLD 99 (224)
Q Consensus 39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e--~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~ 99 (224)
.+-+.++.+++.+..+...+.++|.... .+...|..+...+..++..++..+...+.++..
T Consensus 100 ~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 100 ENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555543311 123334444444444444444444444444443
No 407
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=48.01 E-value=1e+02 Score=22.37 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 163 LSHVTAQLETQVQCCQEEKYRLGEELAGCQETL 195 (224)
Q Consensus 163 l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~ 195 (224)
+...+.+-+.+|+.++........=|...+..|
T Consensus 50 i~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 50 IDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444444444444444444444443
No 408
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=47.81 E-value=98 Score=21.87 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhh
Q psy5037 162 ELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKE 219 (224)
Q Consensus 162 ~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l 219 (224)
.|..++..|=.-...|+.+...|...+.+.......|-...+....++.++-.+...+
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3444455555555566666666666666666666666666666666666555554433
No 409
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=47.57 E-value=1.3e+02 Score=27.65 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5037 30 LELERNRAQSEVRRLQT 46 (224)
Q Consensus 30 lr~~r~~a~~E~~rlq~ 46 (224)
++.++..+..+++.|.+
T Consensus 4 l~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 4 LKEQREEIVAEIRSLLD 20 (378)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33344444444444444
No 410
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=47.38 E-value=1.8e+02 Score=27.64 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q psy5037 99 DLLKHLKFISQETAELENNNHSLDGEMKSCKNL 131 (224)
Q Consensus 99 ~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le 131 (224)
.|..+...+..++..++..+..++.++..+.+-
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355555566666666666666666655554443
No 411
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=47.37 E-value=1.1e+02 Score=22.24 Aligned_cols=78 Identities=21% Similarity=0.224 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy5037 19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMN-----QHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKK 93 (224)
Q Consensus 19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~-----~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~k 93 (224)
.+....+++..+......+......+...+.... ........-+..+...+..++..+.....+|......+...
T Consensus 6 ~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a 85 (123)
T PF02050_consen 6 ELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEA 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433333333 33334444444444444444444444444444444444333
Q ss_pred HHH
Q psy5037 94 ESE 96 (224)
Q Consensus 94 E~E 96 (224)
-.+
T Consensus 86 ~~~ 88 (123)
T PF02050_consen 86 RRE 88 (123)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 412
>PLN02678 seryl-tRNA synthetase
Probab=47.34 E-value=2e+02 Score=27.70 Aligned_cols=71 Identities=13% Similarity=0.241 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH
Q psy5037 58 IQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL 132 (224)
Q Consensus 58 l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~ 132 (224)
+-.+-.....+++.|+.++.....+|..+. .......+|.++...|..++..++..+..++.++..+.+.+
T Consensus 38 ld~~~r~l~~~~e~lr~erN~~sk~I~~~k----~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEFNKLNKEVAKLK----IAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333444444444444444444444443321 11133455777778888888888888888888877766555
No 413
>KOG4603|consensus
Probab=47.33 E-value=1.8e+02 Score=24.74 Aligned_cols=25 Identities=12% Similarity=0.310 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 154 KSLEAKLEELSHVTAQLETQVQCCQ 178 (224)
Q Consensus 154 ~~~e~qL~~l~~~~~~lE~EL~~lk 178 (224)
..+...|.+|.+.++...+.|..++
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555554444444
No 414
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=47.30 E-value=1.4e+02 Score=28.61 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy5037 38 QSEVRRLQTELYDMNQHNMTIQQELE 63 (224)
Q Consensus 38 ~~E~~rlq~dL~~~~~e~~~l~~ele 63 (224)
..+-+++...++.+..+...+.++|.
T Consensus 35 d~~~r~~~~~~e~l~~~rn~~sk~ig 60 (429)
T COG0172 35 DEERRKLLRELEELQAERNELSKEIG 60 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 415
>PRK15396 murein lipoprotein; Provisional
Probab=47.23 E-value=1.1e+02 Score=22.34 Aligned_cols=44 Identities=9% Similarity=0.234 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy5037 28 NNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAED 71 (224)
Q Consensus 28 ~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~elee 71 (224)
+++....+.+...+..+..+...+....+....+-.....++++
T Consensus 28 d~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 28 DQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444444443
No 416
>KOG3990|consensus
Probab=46.48 E-value=80 Score=28.37 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHV 166 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~ 166 (224)
.-+.++|+.|+..+.++...|=+...||+.|..-
T Consensus 228 ~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad 261 (305)
T KOG3990|consen 228 QKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD 261 (305)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc
Confidence 4467888888888888888888888888888764
No 417
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=46.40 E-value=78 Score=23.03 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=24.0
Q ss_pred hhhhhhhhhhhhhHhHHHHHHHH---HHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q psy5037 119 HSLDGEMKSCKNLLAESEKKVMK---LEALVQDKDCSIKSLEAKLEELSHVTAQL 170 (224)
Q Consensus 119 ~~lE~e~nel~le~~~~~~ri~~---le~~I~e~~~~i~~~e~qL~~l~~~~~~l 170 (224)
.+++...++++.-+..++.-+.+ +..-+++-+..|+.++.++..++.-+..+
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444444 33444444444444444444444444433
No 418
>KOG3595|consensus
Probab=45.50 E-value=4e+02 Score=29.43 Aligned_cols=94 Identities=20% Similarity=0.246 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037 23 FKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLK 102 (224)
Q Consensus 23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle 102 (224)
++.-+..+......+.++....+..+.+.....+.+..+......+..++...+......+.++..++.....|......
T Consensus 932 ~~~~~~~~e~~~~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~a~~Li~~Ls~e~~rW~~ 1011 (1395)
T KOG3595|consen 932 KRQELARLEAELKAAMKELEEKSAELQDLEEKLQRLKDEYEQLIAEKQELEEDMDACELKLLRAEELIQGLSGEKERWSE 1011 (1395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 44555556777777788888888888888888888888888888888888888888888888888888888888888777
Q ss_pred HHHHHHHHHHHHHh
Q psy5037 103 HLKFISQETAELEN 116 (224)
Q Consensus 103 ~~~~l~~e~~~lE~ 116 (224)
.+.........+.+
T Consensus 1012 ~~~~~~~~~~~l~g 1025 (1395)
T KOG3595|consen 1012 TSEQFSKQYSRLVG 1025 (1395)
T ss_pred HHHHHHHHHhhhhH
Confidence 77777666655543
No 419
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=45.47 E-value=2.4e+02 Score=26.70 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH
Q psy5037 58 IQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL 132 (224)
Q Consensus 58 l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~ 132 (224)
+-.+......++++|+.++.....+|.... ...+.+...|.++...+..++..++..+..++.+++.+.+.+
T Consensus 35 ld~~~r~~~~~~~~l~~erN~~sk~i~~~~---~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 35 LDDERKKLLSEIEELQAKRNELSKQIGKAK---GQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333444444445555555555555554321 112212567888888888888888888888888888766655
No 420
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=45.45 E-value=1.2e+02 Score=22.25 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Q psy5037 168 AQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTEN 214 (224)
Q Consensus 168 ~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~ 214 (224)
..|-.+...||+--..|..-+..++.+|++|++.-+-|+.=+..+..
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777777777888888888877777766665543
No 421
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=45.04 E-value=1.3e+02 Score=29.35 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5037 194 TLDTMLRQKEELRLQL 209 (224)
Q Consensus 194 ~~~kld~~~e~l~~qL 209 (224)
.+.++++.+..|..|+
T Consensus 105 KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 105 RIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 422
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=44.93 E-value=1.3e+02 Score=22.41 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q psy5037 95 SERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSH 165 (224)
Q Consensus 95 ~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~ 165 (224)
.+|+.+.+.+......++.++.+++..+-- .+.-.+++.+.......+..|+.+|..|++
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs-----------~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELS-----------PEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCC-----------hHHHHHHHHHHHHHHHHhhccHHHHHHHHH
No 423
>KOG1937|consensus
Probab=44.82 E-value=3.1e+02 Score=26.76 Aligned_cols=10 Identities=0% Similarity=0.205 Sum_probs=5.7
Q ss_pred HHHHHHHHHH
Q psy5037 20 IDRFKYELNN 29 (224)
Q Consensus 20 ~~~lr~ql~~ 29 (224)
+.++.-|+..
T Consensus 233 ~eel~eq~ee 242 (521)
T KOG1937|consen 233 VEELTEQNEE 242 (521)
T ss_pred HHHHHhhhhh
Confidence 5566655554
No 424
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=44.60 E-value=1.9e+02 Score=24.30 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy5037 63 EASRTEAEDVKLQLQHYCCE 82 (224)
Q Consensus 63 e~~e~eleeLk~~~~~~~~E 82 (224)
..++.++.+|..++..+...
T Consensus 130 ~~L~~e~~~L~~~~~~l~~~ 149 (189)
T PF10211_consen 130 EELEEEKEELEKQVQELKNK 149 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 425
>KOG4005|consensus
Probab=44.47 E-value=2.2e+02 Score=25.42 Aligned_cols=52 Identities=17% Similarity=0.168 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q psy5037 78 HYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCK 129 (224)
Q Consensus 78 ~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~ 129 (224)
...+.|.+++..|-.++.++..|..+-++|+..-..|=.++|.+++++-.++
T Consensus 87 rKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~ 138 (292)
T KOG4005|consen 87 RKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLR 138 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3344555555555555555555555555555444444444444444444333
No 426
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=44.16 E-value=2.4e+02 Score=25.39 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Q psy5037 82 EVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALV 146 (224)
Q Consensus 82 E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I 146 (224)
+.......+..+..|...+++.......++..+-.++...-+.+..+..+...+...+..+..++
T Consensus 194 eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV 258 (269)
T PF05278_consen 194 EKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKV 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444444444444444333
No 427
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=43.81 E-value=1e+02 Score=24.75 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=34.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037 50 DMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLK 102 (224)
Q Consensus 50 ~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle 102 (224)
.+....+..+..|...+.-+..|+.++...++||..+...+.....-+..|.+
T Consensus 77 ~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 77 RLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455556666666667777777777777777777777777666666655443
No 428
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=43.68 E-value=3.1e+02 Score=26.56 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEE 204 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~ 204 (224)
.+.+.++-..|..+...+..++.-|......+..+..++..+|++=..+...|...+..-.+|..=++.
T Consensus 13 ~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~ 81 (508)
T PF04129_consen 13 SENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDD 81 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 356777777888888888888888888888888888888888887777777777777666666544443
No 429
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=43.56 E-value=3.9e+02 Score=27.62 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhH
Q psy5037 135 SEKKVMKLEALVQDK 149 (224)
Q Consensus 135 ~~~ri~~le~~I~e~ 149 (224)
..++|..|+.+|...
T Consensus 647 ~k~KIe~L~~eIkkk 661 (762)
T PLN03229 647 LQEKIESLNEEINKK 661 (762)
T ss_pred hHHHHHHHHHHHHHH
Confidence 356666666666543
No 430
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=43.50 E-value=3.1e+02 Score=26.58 Aligned_cols=70 Identities=11% Similarity=0.137 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhcC
Q psy5037 152 SIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKESA 221 (224)
Q Consensus 152 ~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l~~ 221 (224)
.+.++..+|......+..||+-|..-+.+-..+..++..+++....+......-..-...+..-...+.+
T Consensus 15 ~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~i 84 (508)
T PF04129_consen 15 NFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVI 84 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 4555566666666666677777777777777777777777777777766666555544444444444433
No 431
>KOG4593|consensus
Probab=43.49 E-value=3.8e+02 Score=27.44 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=18.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy5037 14 KLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMT 57 (224)
Q Consensus 14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~ 57 (224)
++...++++..--+--++--...+...=..+|..+.......+.
T Consensus 94 r~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~ 137 (716)
T KOG4593|consen 94 RNYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQA 137 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333333334444444444444433333
No 432
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=43.44 E-value=1.1e+02 Score=21.13 Aligned_cols=31 Identities=26% Similarity=0.180 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy5037 94 ESERLDLLKHLKFISQETAELENNNHSLDGE 124 (224)
Q Consensus 94 E~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e 124 (224)
+.|+.-|..++..+..++..+++++.+-.+-
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~ 33 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFV 33 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 4455555555566666666666666555444
No 433
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=43.43 E-value=1.9e+02 Score=23.87 Aligned_cols=86 Identities=13% Similarity=0.207 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHH-HHHHHHHHHH
Q psy5037 34 RNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEI----LSKKESERL-DLLKHLKFIS 108 (224)
Q Consensus 34 r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~----i~~kE~E~~-~Lle~~~~l~ 108 (224)
+.+.....-.+..+++.+..+.+.+. ..+...|+.....+..++.++... |.....+.. ++..+-..++
T Consensus 46 k~d~e~~~~~~~a~~~eLr~el~~~~------k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r 119 (177)
T PF07798_consen 46 KSDLENQEYLFKAAIAELRSELQNSR------KSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIR 119 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34555555556666666666555432 122333333333333333333332 222222211 2333444555
Q ss_pred HHHHHHHhhhhhhhhhh
Q psy5037 109 QETAELENNNHSLDGEM 125 (224)
Q Consensus 109 ~e~~~lE~r~~~lE~e~ 125 (224)
.+....+.++.+++..+
T Consensus 120 ~e~~~~~~ki~e~~~ki 136 (177)
T PF07798_consen 120 EEQAKQELKIQELNNKI 136 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666555443
No 434
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=43.35 E-value=2e+02 Score=25.03 Aligned_cols=30 Identities=30% Similarity=0.362 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5037 80 CCEVQRIEEILSKKESERLDLLKHLKFISQ 109 (224)
Q Consensus 80 ~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~ 109 (224)
+.+|-.++..|++...+++.+..+...+..
T Consensus 161 ~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 161 VEDLLEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544444444444444433
No 435
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=43.19 E-value=1.1e+02 Score=21.27 Aligned_cols=65 Identities=20% Similarity=0.172 Sum_probs=49.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 15 LATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCC 81 (224)
Q Consensus 15 ~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~ 81 (224)
.+..-|+.|+.+|+--..-++.+.+-++-+...-.. +....+...+.++...++-|+.++..|..
T Consensus 6 ~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~--~~~~~~~~~l~es~~ki~~Lr~~L~k~~~ 70 (72)
T cd00089 6 KLQSRLERLEKELSIELKVKEGAENLLRLYSDEKKK--KLLAEAEQMLRESKQKLELLKMQLEKLKQ 70 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678889999988777777787777777655322 56777888888888888888888888764
No 436
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.09 E-value=1.3e+02 Score=21.81 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=11.6
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q psy5037 142 LEALVQDKDCSIKSLEAKLEELSHVTAQ 169 (224)
Q Consensus 142 le~~I~e~~~~i~~~e~qL~~l~~~~~~ 169 (224)
++.+|.++++.+.-.+..|++|...+++
T Consensus 6 lE~Ri~eLE~r~AfQE~tieeLn~~laE 33 (72)
T COG2900 6 LEARIIELEIRLAFQEQTIEELNDALAE 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 437
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=43.08 E-value=1.7e+02 Score=23.34 Aligned_cols=97 Identities=21% Similarity=0.251 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhH-----hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy5037 116 NNNHSLDGEMKSCKNLL-----AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEK-YRLGEELA 189 (224)
Q Consensus 116 ~r~~~lE~e~nel~le~-----~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er-~~l~~dL~ 189 (224)
...+++.+.+..+...+ ..+...+..+...+.............+......+..|+.....++.+. ..++.++.
T Consensus 8 ~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~Eld 87 (136)
T PF04871_consen 8 EEEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELD 87 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhch
Q psy5037 190 GCQETLDTMLRQKEELRLQLADT 212 (224)
Q Consensus 190 ~~re~~~kld~~~e~l~~qL~~~ 212 (224)
.+=-+..-++..+......|..+
T Consensus 88 DLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 88 DLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHc
No 438
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=42.95 E-value=1.6e+02 Score=25.54 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 158 AKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEE 204 (224)
Q Consensus 158 ~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~ 204 (224)
+.|+.|+..+..+|..|...+......+..+..+-..+...+..+..
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~ 78 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNE 78 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666666666666666666555555544444443
No 439
>KOG3119|consensus
Probab=41.96 E-value=2.1e+02 Score=25.50 Aligned_cols=65 Identities=9% Similarity=0.197 Sum_probs=47.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy5037 12 EAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQL 76 (224)
Q Consensus 12 ~~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~ 76 (224)
..+.-.....+.+|--+++++.|+........++-.+..+..++..+..+++.+..++..++.-.
T Consensus 188 ~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 188 VEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred hhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788888888888888887777777777777777777777777777766665543
No 440
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=41.85 E-value=1.6e+02 Score=22.63 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQC 176 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~ 176 (224)
.++.+-+.-+.++|......+..++..+..+...+..+...+..
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 83 KDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555566666666666666666666666665555555543
No 441
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=41.84 E-value=2.7e+02 Score=25.30 Aligned_cols=137 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH---------hHHHHHHHHHHHHHHhHHhhH
Q psy5037 83 VQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL---------AESEKKVMKLEALVQDKDCSI 153 (224)
Q Consensus 83 ~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~---------~~~~~ri~~le~~I~e~~~~i 153 (224)
+..++.-++.. ......+....+..++..++.++..++..+..++..- .....-+..++.++.+....+
T Consensus 153 ~~~~~~~i~~~--~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l 230 (362)
T TIGR01010 153 LKEGERLINRL--NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQL 230 (362)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhchHHHHHhhcC
Q psy5037 154 KSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEEL--------AGCQETLDTMLRQKEELRLQLADTENYKTKESA 221 (224)
Q Consensus 154 ~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL--------~~~re~~~kld~~~e~l~~qL~~~~~~~~~l~~ 221 (224)
..+......-+=.+..+..++..++.........+ ....-....|....+..+..+.+.-.+.....+
T Consensus 231 ~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~ 306 (362)
T TIGR01010 231 AQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRV 306 (362)
T ss_pred HHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 442
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=41.82 E-value=2.2e+02 Score=28.26 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchH
Q psy5037 186 EELAGCQETLDTMLRQKEELRLQLADTE 213 (224)
Q Consensus 186 ~dL~~~re~~~kld~~~e~l~~qL~~~~ 213 (224)
.+...++.+...+...++.+..++..+.
T Consensus 230 ~~~~~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 230 ADKQKIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333445555555555555555555443
No 443
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=40.80 E-value=1.3e+02 Score=21.14 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy5037 69 AEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFIS 108 (224)
Q Consensus 69 leeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~ 108 (224)
+..++..+..+...+..+|......+..+..+.+++.++.
T Consensus 8 l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 8 LNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444443
No 444
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=40.78 E-value=2.2e+02 Score=24.04 Aligned_cols=91 Identities=19% Similarity=0.240 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy5037 21 DRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDL 100 (224)
Q Consensus 21 ~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~L 100 (224)
.+|...+..+.-.|..|..-+..|..+-.... ..+..........-.++-.+.+++...+..+++...-+|+..+-|
T Consensus 7 K~LQeKIrrLELER~qAe~nl~~LS~et~~yk---~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyM 83 (178)
T PF14073_consen 7 KNLQEKIRRLELERSQAEDNLKQLSRETSHYK---KVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYM 83 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH---HHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666665555443322 333344444444445555556677777777777777777777776
Q ss_pred HHHHHHHHHHHHHH
Q psy5037 101 LKHLKFISQETAEL 114 (224)
Q Consensus 101 le~~~~l~~e~~~l 114 (224)
-..+.+...+-..+
T Consensus 84 Rkmv~~ae~er~~~ 97 (178)
T PF14073_consen 84 RKMVESAEKERNAV 97 (178)
T ss_pred HHHHHHHHHhhhHH
Confidence 66666655554433
No 445
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=40.53 E-value=1.8e+02 Score=22.95 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=13.2
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 142 LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQ 175 (224)
Q Consensus 142 le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~ 175 (224)
|+.+++..+-.|..++.|-..+..+..+|.+.|.
T Consensus 75 L~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 75 LEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444443333
No 446
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=40.43 E-value=1.5e+02 Score=21.97 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy5037 16 ATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEA 64 (224)
Q Consensus 16 ~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~ 64 (224)
...|+..+-.+||+|..-.+.+.+.+..|...|-.+...++.+..++..
T Consensus 24 ~~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 24 DEEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999988888888877777766543
No 447
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.00 E-value=1e+02 Score=19.97 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Q psy5037 183 RLGEELAGCQETLDTMLRQKEELRLQLADTE 213 (224)
Q Consensus 183 ~l~~dL~~~re~~~kld~~~e~l~~qL~~~~ 213 (224)
.|...+.+++...+.|...++.|.+++..+.
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 448
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=39.97 E-value=1.1e+02 Score=23.73 Aligned_cols=60 Identities=12% Similarity=0.066 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhc
Q psy5037 161 EELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKES 220 (224)
Q Consensus 161 ~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l~ 220 (224)
......|..-...|-.-......|..++..+...+..++..++-+..|=..+......|+
T Consensus 39 ~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE 98 (116)
T PF05064_consen 39 NEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLE 98 (116)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444555555555555555555555444444443
No 449
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=39.87 E-value=16 Score=28.22 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy5037 23 FKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELE 63 (224)
Q Consensus 23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele 63 (224)
|-..+..+...+..+..++..|+..+.........+..-|-
T Consensus 30 l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~ 70 (131)
T PF05103_consen 30 LAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALI 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh
Confidence 33333333333334444444444444443333333333333
No 450
>KOG0992|consensus
Probab=39.87 E-value=3.9e+02 Score=26.51 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=26.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy5037 10 EREAKLATTEIDRFKYELNNLE----LERNRAQSEVRRLQTELYD 50 (224)
Q Consensus 10 ~~~~~~~~~e~~~lr~ql~~lr----~~r~~a~~E~~rlq~dL~~ 50 (224)
.++-|.|+.++.+|+-++..+. ...-...++.+++..+-..
T Consensus 237 ~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~~~ 281 (613)
T KOG0992|consen 237 IREHKLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQVAE 281 (613)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888643 4445555555555554443
No 451
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=39.82 E-value=1.1e+02 Score=23.63 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 36 RAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIE 87 (224)
Q Consensus 36 ~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE 87 (224)
.....+..++.+++....++..+...-..+++++..|+.. .+|+.+.+|-+
T Consensus 47 ~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg-~~~i~e~AR~~ 97 (117)
T COG2919 47 NGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG-RDYIEERARSE 97 (117)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHH
Confidence 3445556666666677777777777777777777777777 77777776653
No 452
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=38.53 E-value=1.6e+02 Score=22.40 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=20.6
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037 21 DRFKYELNN-------LELERNRAQSEVRRLQTELYDMNQHN 55 (224)
Q Consensus 21 ~~lr~ql~~-------lr~~r~~a~~E~~rlq~dL~~~~~e~ 55 (224)
+-||+||.= +++...++..+|..+...|.++...-
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346777663 56666666666666666555555433
No 453
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=38.30 E-value=2.6e+02 Score=24.15 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037 26 ELNNLELERNRAQSEVR-RLQTELYDMNQHNMTIQ-QELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD 99 (224)
Q Consensus 26 ql~~lr~~r~~a~~E~~-rlq~dL~~~~~e~~~l~-~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~ 99 (224)
||.++..+|+.+...++ +|..+|..+...-..-. ..-.........|+..+...-..|=.|++.+..-++..-+
T Consensus 14 ~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqkYLE 89 (205)
T PF12240_consen 14 QLQAACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQKYLE 89 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777766655 45555544422110000 0000001234556666666666666666666666666533
No 454
>PLN02320 seryl-tRNA synthetase
Probab=37.81 E-value=3e+02 Score=26.99 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH
Q psy5037 58 IQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL 132 (224)
Q Consensus 58 l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~ 132 (224)
+-.+......+++.++.++.....+|.. .....+...|.++...+..++..+|..+..++.++..+-+-+
T Consensus 98 ld~~~r~~~~~~~~lr~ern~~sk~i~~-----~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 98 LYENMLALQKEVERLRAERNAVANKMKG-----KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3334444455555555555555555543 111234566888888888888888888888888888766554
No 455
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=37.73 E-value=1.6e+02 Score=21.32 Aligned_cols=81 Identities=16% Similarity=0.290 Sum_probs=57.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 13 AKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTI-QQELEASRTEAEDVKLQLQHYCCEVQRIEEILS 91 (224)
Q Consensus 13 ~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l-~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~ 91 (224)
..+..-.++.+..++..++..-..+...+.++...|..+..-.... -..+......+..++.++..+..-+.++...+.
T Consensus 9 ~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~ 88 (92)
T PF14712_consen 9 LSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRAD 88 (92)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888999999999999988888888888877744333 222333777777777777777777777776665
Q ss_pred hH
Q psy5037 92 KK 93 (224)
Q Consensus 92 ~k 93 (224)
.+
T Consensus 89 ~L 90 (92)
T PF14712_consen 89 KL 90 (92)
T ss_pred hh
Confidence 43
No 456
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=37.64 E-value=75 Score=26.54 Aligned_cols=19 Identities=37% Similarity=0.426 Sum_probs=2.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5037 170 LETQVQCCQEEKYRLGEEL 188 (224)
Q Consensus 170 lE~EL~~lk~er~~l~~dL 188 (224)
|..+++.|++|-..|+.+|
T Consensus 29 L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 29 LREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 457
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=37.30 E-value=1.6e+02 Score=28.42 Aligned_cols=65 Identities=17% Similarity=0.205 Sum_probs=41.6
Q ss_pred hHhHHHHHHHHHHHHHHhHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 131 LLAESEKKVMKLEALVQDKDCSIKSLEA--KLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETL 195 (224)
Q Consensus 131 e~~~~~~ri~~le~~I~e~~~~i~~~e~--qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~ 195 (224)
+..-++.|+..|+.+|..+...+..++. .=..+......+...+..|+..+.-|...+..+...+
T Consensus 164 Q~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~ 230 (475)
T PF10359_consen 164 QIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSE 230 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3455678888888888888888877664 3334445556666666666666666666665555443
No 458
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.25 E-value=1.9e+02 Score=22.22 Aligned_cols=51 Identities=22% Similarity=0.177 Sum_probs=32.3
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 142 LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQ 192 (224)
Q Consensus 142 le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~r 192 (224)
+=..|...+..+..+-.++..|+..+..|-+|=..|+-|...|..-|....
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555566666666666666666666666666666666666666665543
No 459
>KOG4572|consensus
Probab=36.88 E-value=5.4e+02 Score=27.32 Aligned_cols=19 Identities=26% Similarity=0.132 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5037 191 CQETLDTMLRQKEELRLQL 209 (224)
Q Consensus 191 ~re~~~kld~~~e~l~~qL 209 (224)
+.-.++...++.+..+.||
T Consensus 1209 ld~d~dh~~de~ekdreqL 1227 (1424)
T KOG4572|consen 1209 LDIDIDHDRDEIEKDREQL 1227 (1424)
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 3444455555555555444
No 460
>KOG4571|consensus
Probab=36.86 E-value=1e+02 Score=28.10 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=28.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy5037 53 QHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKES 95 (224)
Q Consensus 53 ~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~ 95 (224)
.+-+.+..+++.++.+-++||.++.++--||+.+...|-..-.
T Consensus 248 ae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 248 AEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677777777777777777777777776655443
No 461
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=36.85 E-value=2.7e+02 Score=23.74 Aligned_cols=75 Identities=9% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037 45 QTELYDMNQHNMTIQQELEASRTEAEDVKLQLQ-------HYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENN 117 (224)
Q Consensus 45 q~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~-------~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r 117 (224)
.+|++++....-.++.++...+..++++-..+. ...-+|.+++.+|..++...+.++.=+..-..-.+.|-..
T Consensus 71 r~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~ 150 (189)
T TIGR02132 71 KEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKET 150 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHH
Q ss_pred hh
Q psy5037 118 NH 119 (224)
Q Consensus 118 ~~ 119 (224)
|+
T Consensus 151 ~~ 152 (189)
T TIGR02132 151 IQ 152 (189)
T ss_pred HH
No 462
>PRK11519 tyrosine kinase; Provisional
Probab=36.75 E-value=4.6e+02 Score=26.50 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 184 LGEELAGCQETLDTMLRQKEELR 206 (224)
Q Consensus 184 l~~dL~~~re~~~kld~~~e~l~ 206 (224)
+..+....+.....+-.+.+.+.
T Consensus 375 L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 375 LTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445555555444444444
No 463
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=36.11 E-value=5.4e+02 Score=27.13 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Q psy5037 40 EVRRLQTELYDMNQHNMTIQQELEAS--------------RTEAEDVKLQLQHYCC 81 (224)
Q Consensus 40 E~~rlq~dL~~~~~e~~~l~~ele~~--------------e~eleeLk~~~~~~~~ 81 (224)
-|.|+|+|+++++-+...-..-.++. +.+++.++.++.+|..
T Consensus 349 KI~RYQ~Dl~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQ 404 (1480)
T COG3096 349 KIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQ 404 (1480)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888877766554444444 4445555555555543
No 464
>PRK14160 heat shock protein GrpE; Provisional
Probab=35.72 E-value=2.2e+02 Score=24.62 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 163 LSHVTAQLETQVQCCQEEKYRLGEELAGCQ 192 (224)
Q Consensus 163 l~~~~~~lE~EL~~lk~er~~l~~dL~~~r 192 (224)
+...+..++.++..+++..-.+.+|....|
T Consensus 66 l~~~l~~l~~e~~elkd~~lR~~AefeN~R 95 (211)
T PRK14160 66 LKEENKKLENELEALKDRLLRTVAEYDNYR 95 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444433333
No 465
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=35.64 E-value=61 Score=25.11 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy5037 43 RLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSL 121 (224)
Q Consensus 43 rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~l 121 (224)
++..+|++-...-......+..-.+.|-+--.++..+..+|.+++..=..++....-+..+-..|..-+..+|..+..+
T Consensus 26 ~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~~~l 104 (116)
T PF05064_consen 26 KWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQVEKL 104 (116)
T ss_dssp -----------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444444444444444444444444444333
No 466
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=35.43 E-value=48 Score=25.39 Aligned_cols=10 Identities=30% Similarity=0.381 Sum_probs=3.2
Q ss_pred HHHHHHHhhh
Q psy5037 109 QETAELENNN 118 (224)
Q Consensus 109 ~e~~~lE~r~ 118 (224)
.++..|..++
T Consensus 46 ~~~~~l~~~l 55 (131)
T PF05103_consen 46 EEIEELQAQL 55 (131)
T ss_dssp HHHHCCCCT-
T ss_pred HHHHHHHhhh
Confidence 3333333333
No 467
>KOG4593|consensus
Probab=35.12 E-value=5.1e+02 Score=26.54 Aligned_cols=15 Identities=33% Similarity=0.202 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy5037 177 CQEEKYRLGEELAGC 191 (224)
Q Consensus 177 lk~er~~l~~dL~~~ 191 (224)
++.|...+...+..+
T Consensus 280 LqeE~e~Lqskl~~~ 294 (716)
T KOG4593|consen 280 LQEELEGLQSKLGRL 294 (716)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 468
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=34.30 E-value=86 Score=21.67 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q psy5037 134 ESEKKVMKLEALVQDKDCSIKSLEAKLEE 162 (224)
Q Consensus 134 ~~~~ri~~le~~I~e~~~~i~~~e~qL~~ 162 (224)
+++.|++.|+.++.+.+.....++.++..
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777777766654
No 469
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=34.19 E-value=1.2e+02 Score=19.98 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 57 TIQQELEASRTEAEDVKLQLQHYCC 81 (224)
Q Consensus 57 ~l~~ele~~e~eleeLk~~~~~~~~ 81 (224)
.++.+|++...++.+|+.+++.++.
T Consensus 16 ~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 16 NIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666655544
No 470
>KOG4196|consensus
Probab=33.95 E-value=2.3e+02 Score=22.84 Aligned_cols=42 Identities=29% Similarity=0.396 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 161 EELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQK 202 (224)
Q Consensus 161 ~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~ 202 (224)
.+|.+.-..|-.+|..|+.+.+.+.-++.+.+..|..|....
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455566667777788888888888888888888888876553
No 471
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=33.95 E-value=1.9e+02 Score=22.27 Aligned_cols=38 Identities=11% Similarity=0.281 Sum_probs=20.2
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 142 LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179 (224)
Q Consensus 142 le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~ 179 (224)
+-..+...+..+.....++..++.......++++.++.
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555544
No 472
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=33.60 E-value=2.2e+02 Score=21.73 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHH
Q psy5037 191 CQETLDTMLRQKEELRLQLADTEN 214 (224)
Q Consensus 191 ~re~~~kld~~~e~l~~qL~~~~~ 214 (224)
+|..+..+......+..++.....
T Consensus 42 ar~e~~~~e~k~~~le~~l~e~~~ 65 (100)
T PF06428_consen 42 ARRERAALEEKNEQLEKQLKEKEA 65 (100)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444433333
No 473
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=33.27 E-value=1e+02 Score=22.94 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy5037 94 ESERLDLLKHLKFISQETAELENNNHSLDGEMKSC 128 (224)
Q Consensus 94 E~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel 128 (224)
+.|+..+...++.|..-++.||.|+..+.+.+-++
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~L 59 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQEL 59 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45666677777777777777777777777765554
No 474
>PRK14011 prefoldin subunit alpha; Provisional
Probab=32.94 E-value=2.7e+02 Score=22.58 Aligned_cols=33 Identities=9% Similarity=0.086 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy5037 61 ELEASRTEAEDVKLQLQHYCCEVQRIEEILSKK 93 (224)
Q Consensus 61 ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~k 93 (224)
.|+.+..+++.|...+..+..-..++..-+..+
T Consensus 11 ~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L 43 (144)
T PRK14011 11 ALEVYNQQVQKLQEELSSIDMMKMELLKSIESM 43 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444334443333333
No 475
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=32.86 E-value=14 Score=35.92 Aligned_cols=103 Identities=12% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 10 EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEI 89 (224)
Q Consensus 10 ~~~~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~ 89 (224)
..+..++..||..||..|.+|-+.-.=+.+=+.-+|.|++.|..+.+--..+-......+.+ +......-+.-|...
T Consensus 427 ~~~~~~~~~ei~~lr~~iQ~l~~s~~PLgk~~d~iqEDid~M~~El~~W~~e~~~~~~~l~~---e~~~t~~~~~pl~~~ 503 (539)
T PF10243_consen 427 KKERESVEKEIEKLRESIQTLCRSANPLGKLMDYIQEDIDSMQKELEMWRSEYRQHAEALQE---EQSITDEALEPLKAQ 503 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccchhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhhhHHHHH
Confidence 44555666777777777777666666666666666777777766665555554444433332 222233334444455
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 90 LSKKESERLDLLKHLKFISQETAELE 115 (224)
Q Consensus 90 i~~kE~E~~~Lle~~~~l~~e~~~lE 115 (224)
|..++..|.+..+.+..+...|=.=+
T Consensus 504 L~ele~~I~~~~~~i~~~ka~Il~Ne 529 (539)
T PF10243_consen 504 LAELEQQIKDQQDKICAVKANILKNE 529 (539)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 55555555555555555444443333
No 476
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=32.75 E-value=2.6e+02 Score=22.43 Aligned_cols=120 Identities=16% Similarity=0.083 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH--
Q psy5037 55 NMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL-- 132 (224)
Q Consensus 55 ~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~-- 132 (224)
...+-......+..+.-....+..+..|+.+.+..+..-...+..|...++.+..+....+.+++..=.....--...
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~~~~~~~~~ 101 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLDDSGVLELPE 101 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccccccccccc
Q ss_pred ---hHH-------------HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 133 ---AES-------------EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQV 174 (224)
Q Consensus 133 ---~~~-------------~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL 174 (224)
... +..+..+-.++..|...|..--.++..+...+.....-|
T Consensus 102 ~~~~~~~~~~~~~~~~~l~d~el~~l~~ql~~hl~s~~~n~~~l~~~~~~ie~~~~~L 159 (160)
T PF13094_consen 102 LPQKSLLEASESRFAPTLCDEELLPLLKQLNKHLESMQNNLQQLKGLLEAIERSYAAL 159 (160)
T ss_pred ccccccccccccccCcccchHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhc
No 477
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=32.72 E-value=3.1e+02 Score=23.32 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=0.0
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 123 GEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQK 202 (224)
Q Consensus 123 ~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~ 202 (224)
.++..+---.-.+++++..++..+.+.-....+...|-..+...+..|+..|+.+-..-+.+..-|..-..-.+.|...+
T Consensus 72 ~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~~ 151 (189)
T TIGR02132 72 EDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKETI 151 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHH
Q ss_pred HH
Q psy5037 203 EE 204 (224)
Q Consensus 203 e~ 204 (224)
.+
T Consensus 152 ~~ 153 (189)
T TIGR02132 152 QK 153 (189)
T ss_pred HH
No 478
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=32.28 E-value=1.4e+02 Score=24.77 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---
Q psy5037 20 IDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESE--- 96 (224)
Q Consensus 20 ~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E--- 96 (224)
+-.+..+|..+...+.-+..+++||..+-+-+.++.......+..++.+...|...+..+..=+......+..--..
T Consensus 10 ~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~~~~~~~~e~ 89 (181)
T PF09311_consen 10 MRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDLIESRTAAEH 89 (181)
T ss_dssp HHHHHHHHHHHHHCCHHHHT------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhccccccccchhhhh
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q psy5037 97 -RLDLLKHLKFISQETAELENNNHSLD-------GEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTA 168 (224)
Q Consensus 97 -~~~Lle~~~~l~~e~~~lE~r~~~lE-------~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~ 168 (224)
-..+...+..|..--..+|.....-. +....+.......-.++.+|..-+.++... .-|+..+-.-+.++.
T Consensus 90 ~e~~~~~ei~~L~~l~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~E~~~rl~tL~nlv~q~~~q-~r~evav~~~KqalE 168 (181)
T PF09311_consen 90 EEEKLRSEIDTLQELFPNLEEELRAEISELPSPKSEMAQLQSQGYEIPARLRTLHNLVIQYESQ-GRYEVAVPLCKQALE 168 (181)
T ss_dssp ------------------------------------------S-TTS-HHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHH
T ss_pred hhhcccccchhHHHcCccccccccccccccccccchHHHHHhccccchHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHH
Q ss_pred HHHHH
Q psy5037 169 QLETQ 173 (224)
Q Consensus 169 ~lE~E 173 (224)
.|+.+
T Consensus 169 dl~~~ 173 (181)
T PF09311_consen 169 DLEKE 173 (181)
T ss_dssp HHHHH
T ss_pred HHHHH
No 479
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=32.24 E-value=6.1e+02 Score=26.50 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy5037 19 EIDRFKYELNNLELERNRAQSEV-----RRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKK 93 (224)
Q Consensus 19 e~~~lr~ql~~lr~~r~~a~~E~-----~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~k 93 (224)
|.+-|||+|-.+.-..-+-.+-- .-.-.+|..+..-+-.|+..+.++....+-|...-.++.--|.-..+.-...
T Consensus 395 ENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~ 474 (861)
T PF15254_consen 395 ENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRL 474 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q psy5037 94 ESERLD----LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQ 169 (224)
Q Consensus 94 E~E~~~----Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~ 169 (224)
-..+.+ |++--+--.-+..++--...++=...-.++.-++.++-.+.-|.-.+.+..+.|.-+..-.-.|..+++.
T Consensus 475 ~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~ 554 (861)
T PF15254_consen 475 RKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAK 554 (861)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q psy5037 170 LETQV 174 (224)
Q Consensus 170 lE~EL 174 (224)
|=..|
T Consensus 555 lL~dl 559 (861)
T PF15254_consen 555 LLSDL 559 (861)
T ss_pred Hhhhc
No 480
>PRK15396 murein lipoprotein; Provisional
Probab=32.19 E-value=2e+02 Score=20.97 Aligned_cols=47 Identities=6% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy5037 75 QLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSL 121 (224)
Q Consensus 75 ~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~l 121 (224)
++..+.++|..|...++........+...+....+|+.+.-.|+++.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=32.07 E-value=2e+02 Score=20.96 Aligned_cols=50 Identities=12% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037 50 DMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD 99 (224)
Q Consensus 50 ~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~ 99 (224)
.+...+..|..+|.+.+.+++.|..-+.++.+.+.+.-..=..++.+...
T Consensus 2 ~Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~ 51 (76)
T PF11544_consen 2 ELIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLN 51 (76)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>KOG4460|consensus
Probab=32.01 E-value=5.4e+02 Score=25.89 Aligned_cols=116 Identities=15% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHH
Q psy5037 63 EASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKL 142 (224)
Q Consensus 63 e~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~l 142 (224)
.+..+-+..|+.+..+--.+++-++..+...+.--..|-++|+.+....+.|++++.-+=+..+..
T Consensus 584 ~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~-------------- 649 (741)
T KOG4460|consen 584 EEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSE-------------- 649 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccc--------------
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 143 EALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQL 209 (224)
Q Consensus 143 e~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL 209 (224)
+--+..++.++..||.-+-.+-..|..-+..++...+|+..-+..+..-+
T Consensus 650 -----------------lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al 699 (741)
T KOG4460|consen 650 -----------------LPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSAL 699 (741)
T ss_pred -----------------CCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 483
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=31.99 E-value=1.9e+02 Score=20.72 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy5037 55 NMTIQQELEASRTEAEDVKLQLQHYCCEVQ-RIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEM 125 (224)
Q Consensus 55 ~~~l~~ele~~e~eleeLk~~~~~~~~E~~-rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~ 125 (224)
.+.....|..+..+--+||-+++-....+. ...+-+...-+++.+|.-...++..++......+.+++..+
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 484
>KOG3478|consensus
Probab=31.86 E-value=2.6e+02 Score=22.05 Aligned_cols=81 Identities=21% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------------------------HHHHHHHH
Q psy5037 57 TIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD-----------------------------LLKHLKFI 107 (224)
Q Consensus 57 ~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~-----------------------------Lle~~~~l 107 (224)
.+.++++..-+..-.|...+..|+.--.+++..+..-.--..+ +-.+++.+
T Consensus 2 ~~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI 81 (120)
T KOG3478|consen 2 ALQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFI 81 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhHhHHHH
Q psy5037 108 SQETAELENNNHSLDGEMKSCKNLLAESEK 137 (224)
Q Consensus 108 ~~e~~~lE~r~~~lE~e~nel~le~~~~~~ 137 (224)
+.++.++|+.+++.+-++...+-.+..++.
T Consensus 82 ~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~ 111 (120)
T KOG3478|consen 82 SKEIKRLENQIRDSQEEFEKQREAVIKLQQ 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>KOG4098|consensus
Probab=31.80 E-value=2.8e+02 Score=22.48 Aligned_cols=74 Identities=11% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH----------------------hHHHHHHHHHHHHHHhHHhhHHHHH
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLL----------------------AESEKKVMKLEALVQDKDCSIKSLE 157 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~----------------------~~~~~ri~~le~~I~e~~~~i~~~e 157 (224)
+..+|..++.++..+=+++-+|+-+.++..+=+ -+..+=+=.|+..+......|..+-
T Consensus 20 v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~RKCfRmIgGvLVErTVkeVlP~L~~nke~i~~~i~~l~ 99 (140)
T KOG4098|consen 20 VVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPTRKCFRMIGGVLVERTVKEVLPILQTNKENIEKVIKKLT 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChhhHHHHHhccchhhhhHHHHhHHHHhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5037 158 AKLEELSHVTAQLETQ 173 (224)
Q Consensus 158 ~qL~~l~~~~~~lE~E 173 (224)
.||..+.+..-.+...
T Consensus 100 ~qL~~k~kElnkfk~~ 115 (140)
T KOG4098|consen 100 DQLVQKGKELNKFKKD 115 (140)
T ss_pred HHHHHHHHHHHHHHhh
No 486
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=31.39 E-value=4.1e+02 Score=24.27 Aligned_cols=95 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHH
Q psy5037 76 LQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKS 155 (224)
Q Consensus 76 ~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~ 155 (224)
+.++++.+..-+..+-..+.||.+|.-|+-..+++--.=|=---.+.=-+.+.+.|+..++.=|...+..+.++..-|+.
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQK 149 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQK 149 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHH
Q ss_pred HHHHHHHHHHHHHHH
Q psy5037 156 LEAKLEELSHVTAQL 170 (224)
Q Consensus 156 ~e~qL~~l~~~~~~l 170 (224)
|=..|.--.+.+..|
T Consensus 150 YFvDINiQN~KLEsL 164 (305)
T PF15290_consen 150 YFVDINIQNKKLESL 164 (305)
T ss_pred HHhhhhhhHhHHHHH
No 487
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=31.38 E-value=2.2e+02 Score=21.25 Aligned_cols=42 Identities=24% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 154 KSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTM 198 (224)
Q Consensus 154 ~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kl 198 (224)
.+|+.. ..+.+..|+.++..+..+...|...|...+.....|
T Consensus 41 ksYe~r---wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 41 KSYEAR---WEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred hhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PRK11020 hypothetical protein; Provisional
Probab=31.33 E-value=2.2e+02 Score=22.46 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy5037 15 LATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRT 67 (224)
Q Consensus 15 ~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~ 67 (224)
...+||.+|-..||.++++ .+...-+-=..-+..+..++..+..+|..+..
T Consensus 2 ~~K~Eiq~L~drLD~~~~K--laaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 2 VEKNEIKRLSDRLDAIRHK--LAAASLRGDAEKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred cHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=31.03 E-value=2.6e+02 Score=21.87 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q psy5037 72 VKLQLQHYCCEVQRIEEILSKKESERLD----LLKHLKFISQETAELENNNHSLDGEMKSCK 129 (224)
Q Consensus 72 Lk~~~~~~~~E~~rlE~~i~~kE~E~~~----Lle~~~~l~~e~~~lE~r~~~lE~e~nel~ 129 (224)
+-.++..+..+|..+...+.+-|..-+. +-...+.+-..+..+|+....+.+++++.+
T Consensus 6 ~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemK 67 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMK 67 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhcc
No 490
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=30.81 E-value=1.9e+02 Score=20.33 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 40 EVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQR 85 (224)
Q Consensus 40 E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~r 85 (224)
.++.+..++..+..+...++.+-..+..++..+.. .+|+.++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~--~~rIe~~Ar 68 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR--HERIEKIAK 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHH
No 491
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=30.68 E-value=5.1e+02 Score=26.03 Aligned_cols=89 Identities=12% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhhhhhhhhhH----hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 111 TAELENNNHSLDGEMKSCKNLL----AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGE 186 (224)
Q Consensus 111 ~~~lE~r~~~lE~e~nel~le~----~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~ 186 (224)
..+|...+..+|+....--+.. .++...+...-.++...+..+..|..+|..++..+.-+|..=.+++-+-.....
T Consensus 7 ~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~ 86 (701)
T PF09763_consen 7 EERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKL 86 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q psy5037 187 ELAGCQETLDTML 199 (224)
Q Consensus 187 dL~~~re~~~kld 199 (224)
=+..+..+.+.++
T Consensus 87 L~~eL~~Ll~~l~ 99 (701)
T PF09763_consen 87 LLNELENLLDTLS 99 (701)
T ss_pred HHHHHHHHHHhcC
No 492
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=30.56 E-value=4e+02 Score=25.21 Aligned_cols=73 Identities=19% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy5037 56 MTIQQELEASRTEAEDVKLQLQHYCCEVQRIEE------ILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSC 128 (224)
Q Consensus 56 ~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~------~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel 128 (224)
..+..++..+..++..++.++..+...+..+.. .-..+......+...+..+...+..|..++..+...+...
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 493
>KOG0992|consensus
Probab=30.12 E-value=5.6e+02 Score=25.45 Aligned_cols=166 Identities=19% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy5037 21 DRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDL 100 (224)
Q Consensus 21 ~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~L 100 (224)
+-++.+++.+...+-...+.--.++.-+.....++. -.-+........+-..+.....| .. +.....+..-|
T Consensus 172 ~~~~kl~ie~e~~~h~~qq~e~~l~t~~a~~e~~nr---h~~erlk~~~~s~~e~l~kl~~E-qQ----lq~~~~ehkll 243 (613)
T KOG0992|consen 172 SVAEKLRIELEQLRHSTQQEENLLTTTLAAVEEENR---HLKERLKIVEESRLESLGKLNSE-QQ----LQALIREHKLL 243 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhHH-HH----HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH-hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 101 LKHLKFISQETAELENNNHSLDGEMKSCKNLL-AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179 (224)
Q Consensus 101 le~~~~l~~e~~~lE~r~~~lE~e~nel~le~-~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~ 179 (224)
.++|..++.....+||.+..---...-.+-.+ +..-....+....+.-....|++.+.-.-+|. ........-...-.
T Consensus 244 ee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~~~e~~e~rk~v~k~~~l~q~~~~~~~eL~-K~kde~~~n~~~~~ 322 (613)
T KOG0992|consen 244 EEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQVAEETTEKRKAVKKRDDLIQSRKQVSFELE-KAKDEIKQNDDKVK 322 (613)
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccchHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5037 180 EKYRLGEELAGCQETL 195 (224)
Q Consensus 180 er~~l~~dL~~~re~~ 195 (224)
=...+..+|.-+..+|
T Consensus 323 lie~lq~el~~al~~c 338 (613)
T KOG0992|consen 323 LIEELQDELSVALKEC 338 (613)
T ss_pred HHHHHHHHHHHHHHHH
No 494
>PHA03332 membrane glycoprotein; Provisional
Probab=29.63 E-value=7.7e+02 Score=26.87 Aligned_cols=104 Identities=7% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH--------hHHHHH
Q psy5037 67 TEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL--------AESEKK 138 (224)
Q Consensus 67 ~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~--------~~~~~r 138 (224)
..+.+|+..+.....-|..+.+-+...-..+..+....+. .|+..-+|+.+|+.++|---+.- ..+.++
T Consensus 891 aaia~mksaIg~tNaAV~~lsDai~klGnti~kisatl~~---nI~avNgRIs~Led~VN~r~~~v~~~intLA~ql~~~ 967 (1328)
T PHA03332 891 AATAEMASKIGGLNARVDKTSDVITKLGDTIAKISATLDN---NIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQLKEL 967 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh---hHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 139 VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQV 174 (224)
Q Consensus 139 i~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL 174 (224)
+.++..+|..+..+.-=|. ||..++-.+..--..|
T Consensus 968 ~~~~N~~ie~~~aaalyYQ-Qlnsltnqv~~saskL 1002 (1328)
T PHA03332 968 GTTTNERIEEVMAAALYYQ-QLNSLTNQVTQSASKL 1002 (1328)
T ss_pred hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
No 495
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=29.12 E-value=19 Score=28.74 Aligned_cols=108 Identities=7% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 116 NNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETL 195 (224)
Q Consensus 116 ~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~ 195 (224)
..+.++..-.....-.+..+...+......+......+......+......+.....-+..|...-..|...|..+...-
T Consensus 3 ~~a~~A~~~a~~v~~~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~ 82 (138)
T PF06009_consen 3 EMADEANETAANVLDRLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLS 82 (138)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred HH---HHHHHHHHHHHHhchHHHHHhhcCCC
Q psy5037 196 DT---MLRQKEELRLQLADTENYKTKESAPM 223 (224)
Q Consensus 196 ~k---ld~~~e~l~~qL~~~~~~~~~l~~~~ 223 (224)
.. +...+..+...+..-......+.+||
T Consensus 83 ~~~~~ls~nI~~IrelI~qAR~~An~IkV~m 113 (138)
T PF06009_consen 83 ENNSNLSRNISRIRELIAQARDAANRIKVSM 113 (138)
T ss_dssp -----------------------------B-
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhheeeee
No 496
>KOG0998|consensus
Probab=29.07 E-value=1.7e+02 Score=30.54 Aligned_cols=144 Identities=12% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHH
Q psy5037 76 LQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKS 155 (224)
Q Consensus 76 ~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~ 155 (224)
+.+...++..+..........-.+....+..+...+...+.............-.=..++.++++.+...+..+...|.+
T Consensus 430 ~~~~~~~l~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~ 509 (847)
T KOG0998|consen 430 VLELANELSNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLLPLQLSNDNREISS 509 (847)
T ss_pred cccchhhhhhcchhhhccccccchhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccchhhhcccccccchhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhh
Q psy5037 156 LEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKE 219 (224)
Q Consensus 156 ~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l 219 (224)
...+|+.+...+..|+.-++...-..+.+..+|..+........+.-..+.-.+........++
T Consensus 510 ~~~~ln~~~qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~ 573 (847)
T KOG0998|consen 510 LEKELNELQQQLSVLEGSVKAIESQVENLQKELLDLIYEMADTRSKSTLLDDSFKVGMELFEQL 573 (847)
T ss_pred HHHHHhhhHHHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhh
No 497
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=29.00 E-value=3.3e+02 Score=22.72 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSH 165 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~ 165 (224)
|..+...+...+..|+..+..+..++.+ =+.-.+.++|++....|+.++..|..+..
T Consensus 90 Le~~~~~l~~ri~eLe~~l~~kad~vvs---------Yqll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 90 LEAQLNTITRRLDELERQLQQKADDVVS---------YQLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh---------HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
No 498
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=28.82 E-value=3.8e+02 Score=24.52 Aligned_cols=62 Identities=11% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 20 IDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCC 81 (224)
Q Consensus 20 ~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~ 81 (224)
|.-||+|+..++....++........+++.....+...+..+++....+.+.++.+...+..
T Consensus 1 l~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 62 (378)
T TIGR01554 1 LSELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEK 62 (378)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 499
>KOG0972|consensus
Probab=28.71 E-value=4.2e+02 Score=24.51 Aligned_cols=75 Identities=15% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhcCCC
Q psy5037 149 KDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKESAPM 223 (224)
Q Consensus 149 ~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l~~~~ 223 (224)
+..-..++-..|+....+...|-.+|..+-.+-..+...++.+++....+...+..-++.|+....-.+++..+|
T Consensus 250 Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~Kqem 324 (384)
T KOG0972|consen 250 LDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEM 324 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=28.67 E-value=3.4e+02 Score=22.43 Aligned_cols=151 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-Hhhhhhhh
Q psy5037 44 LQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAEL-ENNNHSLD 122 (224)
Q Consensus 44 lq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~l-E~r~~~lE 122 (224)
+..-++.+..--..+-.=-+.+..+.+.++.++..+..++..+=...+.++..-...-.++-..+...... |.-+..+=
T Consensus 4 i~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AY 83 (159)
T PF05384_consen 4 IKKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAY 83 (159)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHH
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 123 GEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQET 194 (224)
Q Consensus 123 ~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~ 194 (224)
.....++..+..++++-..|..+-.+.+-.+..+...+.-...-+..+.-=|.=|.++-..+...+..++..
T Consensus 84 e~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~~~ 155 (159)
T PF05384_consen 84 EEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQQK 155 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Done!