Query psy5037
Match_columns 224
No_of_seqs 105 out of 116
Neff 6.3
Searched_HMMs 29240
Date Sat Aug 17 00:11:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.3 5.4E-08 1.9E-12 80.9 30.9 68 149-216 200-267 (284)
2 1c1g_A Tropomyosin; contractIl 99.2 8.7E-08 3E-12 79.7 31.2 45 17-61 12-56 (284)
3 1i84_S Smooth muscle myosin he 98.6 1.3E-07 4.4E-12 97.3 11.6 47 10-56 856-902 (1184)
4 1i84_S Smooth muscle myosin he 98.6 9.8E-08 3.4E-12 98.2 9.4 14 24-37 884-897 (1184)
5 3na7_A HP0958; flagellar bioge 98.4 0.0001 3.5E-09 63.6 23.3 63 124-186 91-153 (256)
6 3na7_A HP0958; flagellar bioge 98.4 0.00014 4.7E-09 62.8 21.9 155 25-187 18-172 (256)
7 2fxo_A Myosin heavy chain, car 97.8 0.0027 9.1E-08 49.5 17.4 117 83-199 8-124 (129)
8 2v71_A Nuclear distribution pr 97.6 0.022 7.7E-07 47.2 20.7 102 88-189 49-154 (189)
9 2v71_A Nuclear distribution pr 97.6 0.023 7.7E-07 47.2 20.5 131 16-146 15-153 (189)
10 2efr_A General control protein 97.6 0.021 7E-07 46.0 23.5 130 82-211 22-151 (155)
11 2fxo_A Myosin heavy chain, car 97.1 0.056 1.9E-06 41.8 17.7 34 16-49 18-51 (129)
12 3u1c_A Tropomyosin alpha-1 cha 96.9 0.056 1.9E-06 40.2 14.1 92 120-211 6-97 (101)
13 2b9c_A Striated-muscle alpha t 96.9 0.024 8.3E-07 45.1 12.8 139 39-177 3-141 (147)
14 2efr_A General control protein 96.9 0.13 4.4E-06 41.3 23.5 75 51-125 26-100 (155)
15 2dfs_A Myosin-5A; myosin-V, in 96.8 0.057 1.9E-06 55.3 18.2 16 113-128 981-996 (1080)
16 3vkg_A Dynein heavy chain, cyt 96.8 0.98 3.3E-05 51.1 28.7 185 30-218 1908-2102(3245)
17 3vkg_A Dynein heavy chain, cyt 96.8 0.77 2.6E-05 51.9 27.9 92 107-198 2012-2103(3245)
18 3ol1_A Vimentin; structural ge 96.8 0.11 3.9E-06 39.6 16.1 41 14-54 16-56 (119)
19 3u1c_A Tropomyosin alpha-1 cha 96.8 0.078 2.7E-06 39.4 14.2 92 57-148 6-97 (101)
20 2ocy_A RAB guanine nucleotide 96.7 0.11 3.7E-06 41.7 15.6 105 68-172 45-150 (154)
21 3u59_A Tropomyosin beta chain; 96.7 0.097 3.3E-06 38.8 14.0 91 121-211 7-97 (101)
22 3u59_A Tropomyosin beta chain; 96.6 0.09 3.1E-06 39.0 13.8 92 57-148 6-97 (101)
23 3o0z_A RHO-associated protein 96.4 0.28 9.4E-06 39.9 21.0 120 92-218 45-165 (168)
24 3tnu_B Keratin, type II cytosk 96.4 0.13 4.3E-06 39.7 13.5 69 135-206 55-123 (129)
25 3tnu_A Keratin, type I cytoske 96.3 0.1 3.5E-06 40.4 12.8 72 133-207 55-126 (131)
26 3oja_B Anopheles plasmodium-re 96.0 0.046 1.6E-06 51.3 11.0 58 136-193 515-572 (597)
27 2v66_B Nuclear distribution pr 95.8 0.43 1.5E-05 36.2 14.5 102 94-195 2-107 (111)
28 3o0z_A RHO-associated protein 95.8 0.63 2.2E-05 37.7 19.0 108 22-129 31-138 (168)
29 3swk_A Vimentin; cytoskeleton, 95.5 0.22 7.4E-06 36.0 10.7 79 19-111 1-79 (86)
30 2jee_A YIIU; FTSZ, septum, coi 95.3 0.28 9.6E-06 35.2 10.4 43 27-69 8-50 (81)
31 2ocy_A RAB guanine nucleotide 95.2 0.92 3.1E-05 36.3 19.8 96 83-178 46-142 (154)
32 3tnu_B Keratin, type II cytosk 95.2 0.63 2.2E-05 35.7 13.1 50 145-194 76-125 (129)
33 3bas_A Myosin heavy chain, str 95.0 0.28 9.7E-06 35.5 10.0 58 84-141 10-67 (89)
34 2v66_B Nuclear distribution pr 94.9 0.9 3.1E-05 34.4 14.6 93 58-150 8-104 (111)
35 3bas_A Myosin heavy chain, str 94.8 0.65 2.2E-05 33.6 11.5 75 143-217 13-87 (89)
36 3tnu_A Keratin, type I cytoske 94.8 0.75 2.6E-05 35.4 12.5 51 145-195 78-128 (131)
37 1ic2_A Tropomyosin alpha chain 94.7 0.51 1.7E-05 33.4 10.5 69 123-191 6-74 (81)
38 2b9c_A Striated-muscle alpha t 94.7 0.26 9E-06 39.1 9.8 117 48-164 19-142 (147)
39 3swk_A Vimentin; cytoskeleton, 94.6 0.59 2E-05 33.7 10.8 83 40-129 1-83 (86)
40 1x8y_A Lamin A/C; structural p 94.6 0.36 1.2E-05 34.7 9.6 75 133-210 6-80 (86)
41 3ol1_A Vimentin; structural ge 94.5 1.2 4E-05 33.9 14.1 39 26-64 21-59 (119)
42 2zqm_A Prefoldin beta subunit 94.3 0.88 3E-05 33.6 11.7 80 99-178 10-111 (117)
43 3hnw_A Uncharacterized protein 94.1 0.97 3.3E-05 35.4 11.9 63 100-162 66-128 (138)
44 2i1j_A Moesin; FERM, coiled-co 94.1 0.075 2.6E-06 50.8 6.3 154 32-189 304-457 (575)
45 1ic2_A Tropomyosin alpha chain 94.1 0.96 3.3E-05 32.0 10.8 67 58-124 4-70 (81)
46 2jee_A YIIU; FTSZ, septum, coi 93.9 1.2 4.1E-05 31.9 11.0 66 140-205 9-74 (81)
47 1gk4_A Vimentin; intermediate 93.7 1.3 4.4E-05 31.6 12.5 78 131-211 2-79 (84)
48 2no2_A HIP-I, huntingtin-inter 93.7 1.6 5.6E-05 32.6 15.5 94 20-116 10-103 (107)
49 2e7s_A RAB guanine nucleotide 93.2 1 3.5E-05 35.2 10.4 90 65-167 44-133 (135)
50 2e7s_A RAB guanine nucleotide 93.0 0.23 7.8E-06 39.0 6.4 97 83-179 34-131 (135)
51 1fxk_A Prefoldin; archaeal pro 92.9 1.3 4.3E-05 32.3 10.1 42 135-176 63-104 (107)
52 3hnw_A Uncharacterized protein 92.8 1.9 6.5E-05 33.7 11.5 21 90-110 105-125 (138)
53 3a7p_A Autophagy protein 16; c 92.6 2.1 7.1E-05 34.1 11.5 63 66-128 67-129 (152)
54 3a7p_A Autophagy protein 16; c 92.1 1.9 6.4E-05 34.4 10.6 69 36-104 65-133 (152)
55 2eqb_B RAB guanine nucleotide 92.0 2.8 9.6E-05 30.9 11.8 16 133-148 79-94 (97)
56 2eqb_B RAB guanine nucleotide 91.9 2.9 9.8E-05 30.9 14.4 70 18-87 5-74 (97)
57 1l8d_A DNA double-strand break 91.3 3.3 0.00011 30.4 11.7 31 149-179 69-99 (112)
58 3q8t_A Beclin-1; autophagy, AT 91.2 3.3 0.00011 30.3 13.5 60 53-112 32-91 (96)
59 2v4h_A NF-kappa-B essential mo 90.3 4.6 0.00016 30.4 12.5 82 138-219 25-109 (110)
60 3mov_A Lamin-B1; LMNB1, B-type 90.1 2.1 7.2E-05 31.3 8.6 68 139-209 21-88 (95)
61 3mq9_A Bone marrow stromal ant 89.3 7 0.00024 35.3 13.5 74 102-178 397-470 (471)
62 3qh9_A Liprin-beta-2; coiled-c 88.7 5 0.00017 28.6 9.8 56 47-102 20-75 (81)
63 2xzr_A Immunoglobulin-binding 88.5 6 0.0002 29.2 15.5 43 136-178 61-103 (114)
64 3cvf_A Homer-3, homer protein 88.3 4.4 0.00015 28.8 8.9 70 38-107 5-74 (79)
65 1m1j_B Fibrinogen beta chain; 87.9 11 0.00039 34.9 13.9 69 100-168 91-159 (464)
66 3q8t_A Beclin-1; autophagy, AT 87.9 6.2 0.00021 28.7 14.7 81 48-128 6-86 (96)
67 1go4_E MAD1 (mitotic arrest de 87.7 6.8 0.00023 29.0 9.9 36 15-50 9-44 (100)
68 4h22_A Leucine-rich repeat fli 87.6 6.7 0.00023 29.2 9.8 58 18-75 23-80 (103)
69 3jsv_C NF-kappa-B essential mo 86.7 7.5 0.00026 28.4 10.2 81 139-219 4-87 (94)
70 2v4h_A NF-kappa-B essential mo 86.6 8.5 0.00029 28.9 12.0 94 5-112 14-107 (110)
71 1deq_A Fibrinogen (alpha chain 86.4 11 0.00037 34.2 12.3 42 133-174 116-157 (390)
72 3cvf_A Homer-3, homer protein 86.4 4.6 0.00016 28.7 8.0 39 159-197 35-73 (79)
73 3qh9_A Liprin-beta-2; coiled-c 84.4 9 0.00031 27.2 9.8 60 32-91 19-78 (81)
74 3ghg_A Fibrinogen alpha chain; 84.2 14 0.00049 34.8 12.5 40 134-173 114-153 (562)
75 1fxk_C Protein (prefoldin); ar 83.5 12 0.00042 28.1 11.0 47 133-179 84-130 (133)
76 1x8y_A Lamin A/C; structural p 82.9 10 0.00036 26.9 10.0 54 143-196 27-80 (86)
77 2xnx_M M protein, M1-BC1; cell 82.8 4.8 0.00017 31.7 7.4 69 154-222 69-137 (146)
78 1m1j_B Fibrinogen beta chain; 82.0 33 0.0011 31.9 15.7 39 52-90 120-158 (464)
79 2oto_A M protein; helical coil 81.9 16 0.00056 28.4 18.2 45 37-81 34-78 (155)
80 1gk4_A Vimentin; intermediate 81.7 11 0.00039 26.5 11.0 52 145-196 27-78 (84)
81 4emc_A Monopolin complex subun 81.7 11 0.00039 30.8 9.6 47 23-69 11-57 (190)
82 3trt_A Vimentin; cytoskeleton, 81.5 10 0.00036 25.9 8.5 43 136-178 34-76 (77)
83 3oja_A Leucine-rich immune mol 80.7 32 0.0011 31.0 16.1 40 131-170 443-482 (487)
84 2lw1_A ABC transporter ATP-bin 80.4 9.4 0.00032 27.1 7.8 27 97-123 58-84 (89)
85 3a7o_A Autophagy protein 16; c 79.7 13 0.00044 25.8 8.9 56 68-123 19-74 (75)
86 1x79_B RAB GTPase binding effe 79.5 18 0.0006 27.3 10.4 93 19-124 14-106 (112)
87 3cve_A Homer protein homolog 1 78.7 14 0.00048 25.7 10.7 63 44-106 5-67 (72)
88 2no2_A HIP-I, huntingtin-inter 78.7 18 0.00061 26.9 13.4 88 99-186 12-103 (107)
89 3jsv_C NF-kappa-B essential mo 78.5 17 0.00058 26.5 9.4 80 26-109 3-82 (94)
90 3oja_A Leucine-rich immune mol 78.4 38 0.0013 30.5 14.4 42 100-141 440-481 (487)
91 3nmd_A CGMP dependent protein 77.4 13 0.00043 25.9 7.4 39 73-111 25-63 (72)
92 3i00_A HIP-I, huntingtin-inter 77.2 20 0.00068 27.2 9.1 12 20-31 17-28 (120)
93 3htk_A Structural maintenance 77.1 12 0.00043 24.2 8.4 51 40-90 6-56 (60)
94 3ghg_A Fibrinogen alpha chain; 77.0 50 0.0017 31.2 13.8 48 141-195 114-161 (562)
95 2xzr_A Immunoglobulin-binding 76.6 20 0.00069 26.4 13.6 103 93-195 4-106 (114)
96 3efg_A Protein SLYX homolog; x 76.6 14 0.00048 25.9 7.6 44 136-179 13-56 (78)
97 1jcd_A Major outer membrane li 76.0 14 0.00046 24.1 7.0 42 28-69 7-48 (52)
98 3htk_A Structural maintenance 75.0 14 0.00049 23.9 8.8 49 152-200 6-54 (60)
99 2yy0_A C-MYC-binding protein; 74.4 4.9 0.00017 26.2 4.4 31 47-77 20-50 (53)
100 4h22_A Leucine-rich repeat fli 74.1 24 0.00083 26.1 10.6 63 150-212 22-84 (103)
101 4gkw_A Spindle assembly abnorm 73.8 30 0.001 27.0 18.7 97 16-112 16-129 (167)
102 3ghg_B Fibrinogen beta chain; 73.8 53 0.0018 30.4 12.7 83 100-182 86-173 (461)
103 1pl5_A Regulatory protein SIR4 72.5 28 0.00095 26.2 8.6 70 80-149 59-128 (142)
104 3trt_A Vimentin; cytoskeleton, 72.2 20 0.00069 24.4 10.2 64 20-86 11-75 (77)
105 3mov_A Lamin-B1; LMNB1, B-type 71.8 26 0.00088 25.4 10.1 78 115-195 11-88 (95)
106 2i1j_A Moesin; FERM, coiled-co 71.6 7.5 0.00026 36.9 6.7 97 33-129 329-425 (575)
107 3s4r_A Vimentin; alpha-helix, 71.2 26 0.00089 25.2 11.8 33 97-129 11-43 (93)
108 1x79_B RAB GTPase binding effe 70.3 32 0.0011 25.8 12.2 64 136-199 37-104 (112)
109 1m1j_C Fibrinogen gamma chain; 69.2 68 0.0023 29.2 12.3 43 79-121 89-131 (409)
110 1t2k_D Cyclic-AMP-dependent tr 69.1 21 0.00073 23.4 7.3 22 153-174 31-52 (61)
111 3c9i_A Tail needle protein GP2 68.6 51 0.0017 27.5 12.5 49 136-184 83-131 (242)
112 3m91_A Proteasome-associated A 68.3 21 0.00073 23.0 6.9 35 43-77 13-47 (51)
113 3m91_A Proteasome-associated A 67.8 22 0.00075 23.0 7.1 40 166-205 10-49 (51)
114 1wt6_A Myotonin-protein kinase 67.3 31 0.001 24.5 8.6 43 43-85 28-70 (81)
115 2xdj_A Uncharacterized protein 66.7 31 0.0011 24.4 9.7 43 42-84 23-65 (83)
116 2zdi_C Prefoldin subunit alpha 66.4 33 0.0011 26.4 8.4 47 133-179 94-140 (151)
117 3cve_A Homer protein homolog 1 66.0 30 0.001 23.9 10.8 23 169-191 39-61 (72)
118 1wle_A Seryl-tRNA synthetase; 65.9 44 0.0015 31.1 10.6 28 37-64 75-102 (501)
119 3ghg_C Fibrinogen gamma chain; 65.6 70 0.0024 29.2 11.6 30 100-129 29-58 (411)
120 4emc_A Monopolin complex subun 65.4 51 0.0018 26.9 9.5 45 47-91 21-65 (190)
121 3mq9_A Bone marrow stromal ant 64.9 78 0.0027 28.3 14.9 19 58-76 402-420 (471)
122 1nyh_A Regulatory protein SIR4 64.8 46 0.0016 25.6 9.3 69 81-149 84-152 (166)
123 1fxk_A Prefoldin; archaeal pro 64.4 36 0.0012 24.2 10.4 34 133-166 68-101 (107)
124 3a7o_A Autophagy protein 16; c 64.4 33 0.0011 23.8 8.9 44 23-66 16-59 (75)
125 3vp9_A General transcriptional 64.2 27 0.00093 25.3 6.9 79 42-123 10-89 (92)
126 1deq_A Fibrinogen (alpha chain 63.8 85 0.0029 28.4 13.9 23 103-125 135-157 (390)
127 3s4r_A Vimentin; alpha-helix, 63.7 38 0.0013 24.3 11.8 36 79-114 54-89 (93)
128 3m9b_A Proteasome-associated A 63.3 10 0.00034 32.5 5.1 40 40-79 55-94 (251)
129 3m9b_A Proteasome-associated A 62.2 7 0.00024 33.5 4.0 40 46-85 54-93 (251)
130 2yko_A LINE-1 ORF1P; RNA-bindi 61.9 16 0.00056 30.9 6.2 46 134-179 3-48 (233)
131 1hjb_A Ccaat/enhancer binding 61.7 41 0.0014 24.0 7.9 53 29-81 26-78 (87)
132 2oto_A M protein; helical coil 61.7 54 0.0018 25.3 19.0 22 169-190 118-139 (155)
133 1t2k_D Cyclic-AMP-dependent tr 60.9 32 0.0011 22.5 7.9 36 39-74 22-57 (61)
134 3c9i_A Tail needle protein GP2 59.6 76 0.0026 26.4 14.5 62 87-148 83-144 (242)
135 1jnm_A Proto-oncogene C-JUN; B 59.6 24 0.00083 23.2 5.6 37 38-74 21-57 (62)
136 3efg_A Protein SLYX homolog; x 58.9 29 0.00099 24.2 6.2 44 135-178 19-62 (78)
137 1wle_A Seryl-tRNA synthetase; 58.9 97 0.0033 28.8 11.5 36 96-131 117-152 (501)
138 4etp_A Kinesin-like protein KA 57.7 36 0.0012 30.7 8.2 35 154-188 20-54 (403)
139 2w83_C C-JUN-amino-terminal ki 57.3 47 0.0016 23.3 8.1 22 153-174 53-74 (77)
140 3qne_A Seryl-tRNA synthetase, 56.9 48 0.0017 30.8 9.0 28 37-64 38-65 (485)
141 2l5g_A GPS2 protein, G protein 56.5 28 0.00095 21.1 4.8 27 158-184 8-34 (38)
142 1ci6_A Transcription factor AT 56.3 41 0.0014 22.3 7.8 32 42-73 26-57 (63)
143 2xnx_M M protein, M1-BC1; cell 55.8 40 0.0014 26.5 7.0 74 119-199 62-135 (146)
144 2wt7_A Proto-oncogene protein 55.4 42 0.0014 22.1 8.2 37 39-75 23-59 (63)
145 1m1j_A Fibrinogen alpha subuni 55.1 1.3E+02 0.0046 27.9 12.2 10 20-29 67-76 (491)
146 3ghg_C Fibrinogen gamma chain; 54.6 1.3E+02 0.0043 27.5 14.4 103 14-126 34-136 (411)
147 2dq0_A Seryl-tRNA synthetase; 54.4 65 0.0022 29.5 9.4 61 39-99 38-101 (455)
148 3mtu_A Tropomyosin alpha-1 cha 53.5 52 0.0018 22.6 7.4 55 48-102 4-58 (75)
149 3u06_A Protein claret segregat 53.3 53 0.0018 29.8 8.5 52 54-105 4-55 (412)
150 3i00_A HIP-I, huntingtin-inter 52.9 71 0.0024 24.1 10.5 40 157-196 39-78 (120)
151 4e61_A Protein BIM1; EB1-like 52.6 69 0.0023 23.8 11.0 53 42-94 7-59 (106)
152 4etp_A Kinesin-like protein KA 52.5 61 0.0021 29.2 8.8 51 55-105 5-55 (403)
153 1jnm_A Proto-oncogene C-JUN; B 52.2 44 0.0015 21.9 5.9 21 170-190 27-47 (62)
154 1gu4_A CAAT/enhancer binding p 51.1 59 0.002 22.6 7.6 46 29-74 26-71 (78)
155 3uux_B Mitochondrial division 51.1 1.1E+02 0.0039 25.8 11.5 62 47-108 164-225 (242)
156 2dq0_A Seryl-tRNA synthetase; 49.9 96 0.0033 28.4 9.8 36 97-132 71-106 (455)
157 3qne_A Seryl-tRNA synthetase, 49.5 1E+02 0.0036 28.6 10.0 15 27-41 49-63 (485)
158 3lss_A Seryl-tRNA synthetase; 49.4 96 0.0033 28.8 9.8 23 21-43 47-69 (484)
159 1lwu_C Fibrinogen gamma chain; 49.2 39 0.0013 29.8 6.7 45 78-122 9-53 (323)
160 2w83_C C-JUN-amino-terminal ki 48.9 66 0.0022 22.5 9.6 27 97-123 46-72 (77)
161 3iv1_A Tumor susceptibility ge 48.5 67 0.0023 22.5 9.2 59 141-199 15-73 (78)
162 3bbp_D GRIP and coiled-coil do 48.3 18 0.00062 24.9 3.4 46 72-117 20-65 (71)
163 1t6f_A Geminin; coiled-coil, c 47.8 43 0.0015 20.1 5.3 30 49-78 3-32 (37)
164 2yy0_A C-MYC-binding protein; 47.6 43 0.0015 21.6 5.1 31 18-48 19-49 (53)
165 1ses_A Seryl-tRNA synthetase; 47.3 77 0.0026 28.6 8.7 27 100-126 69-95 (421)
166 1ses_A Seryl-tRNA synthetase; 45.5 75 0.0026 28.7 8.3 62 38-99 34-96 (421)
167 3uux_B Mitochondrial division 45.2 1.4E+02 0.0048 25.2 11.4 73 15-87 153-225 (242)
168 2xv5_A Lamin-A/C; structural p 44.9 73 0.0025 21.9 8.8 46 162-207 9-54 (74)
169 1gk6_A Vimentin; intermediate 44.5 63 0.0022 21.1 7.5 43 164-206 6-48 (59)
170 1m1j_A Fibrinogen alpha subuni 43.9 2E+02 0.0069 26.7 13.7 42 134-175 115-156 (491)
171 1go4_E MAD1 (mitotic arrest de 43.7 93 0.0032 22.8 8.6 18 136-153 74-91 (100)
172 2zxx_A Geminin; coiled-coil, c 43.4 83 0.0028 22.1 6.9 30 47-76 28-57 (79)
173 1gk6_A Vimentin; intermediate 42.3 69 0.0024 20.9 7.1 51 146-196 2-52 (59)
174 3vmx_A Voltage-gated hydrogen 41.6 67 0.0023 20.5 6.6 40 171-210 3-42 (48)
175 3iv1_A Tumor susceptibility ge 41.5 89 0.003 21.9 10.0 15 43-57 15-29 (78)
176 3lss_A Seryl-tRNA synthetase; 40.7 2.2E+02 0.0074 26.4 10.7 30 36-65 41-70 (484)
177 2xv5_A Lamin-A/C; structural p 40.2 88 0.003 21.5 8.9 56 142-197 3-58 (74)
178 1uii_A Geminin; human, DNA rep 39.8 68 0.0023 22.8 5.5 31 33-63 40-70 (83)
179 1gmj_A ATPase inhibitor; coile 39.4 1E+02 0.0034 21.9 6.8 29 143-171 50-78 (84)
180 3m48_A General control protein 38.7 49 0.0017 19.4 3.8 28 167-194 2-29 (33)
181 2dgc_A Protein (GCN4); basic d 38.0 56 0.0019 21.7 4.7 27 166-192 31-57 (63)
182 3c3g_A Alpha/beta peptide with 38.0 61 0.0021 19.0 4.3 28 167-194 2-29 (33)
183 2oxj_A Hybrid alpha/beta pepti 37.5 63 0.0022 19.1 4.3 29 166-194 2-30 (34)
184 2yko_A LINE-1 ORF1P; RNA-bindi 37.5 85 0.0029 26.4 6.7 48 29-76 3-50 (233)
185 3iox_A AGI/II, PA; alpha helix 37.1 2.6E+02 0.009 26.0 14.6 57 131-190 49-105 (497)
186 3c3f_A Alpha/beta peptide with 36.5 66 0.0023 19.0 4.3 29 166-194 2-30 (34)
187 2oqq_A Transcription factor HY 36.3 76 0.0026 19.6 5.3 29 70-98 6-34 (42)
188 1uii_A Geminin; human, DNA rep 36.0 1.2E+02 0.0039 21.6 7.1 35 46-80 39-73 (83)
189 3vp9_A General transcriptional 35.6 1.2E+02 0.0042 21.8 6.7 60 104-166 23-83 (92)
190 3u06_A Protein claret segregat 35.5 1.3E+02 0.0046 27.1 8.3 20 169-188 35-54 (412)
191 1wlq_A Geminin; coiled-coil; 2 35.4 71 0.0024 22.7 5.0 27 48-74 33-59 (83)
192 1d7m_A Cortexillin I; coiled-c 35.3 1.3E+02 0.0043 21.8 15.4 58 20-77 6-63 (101)
193 3onj_A T-snare VTI1; helix, HA 35.2 1.2E+02 0.0041 21.6 9.8 57 149-205 32-92 (97)
194 2bni_A General control protein 34.8 67 0.0023 19.0 4.0 29 166-194 2-30 (34)
195 1a93_B MAX protein, coiled coi 34.8 64 0.0022 19.1 3.9 25 144-168 7-31 (34)
196 1jcd_A Major outer membrane li 34.1 94 0.0032 20.0 7.2 35 26-60 12-46 (52)
197 1zxa_A CGMP-dependent protein 33.9 71 0.0024 21.7 4.7 27 80-106 24-50 (67)
198 1lwu_A Fibrinogen alpha-1 chai 33.2 1.3E+02 0.0044 22.7 6.4 52 44-95 20-71 (119)
199 2c5k_T Syntaxin TLG1, T-snare 33.0 1.3E+02 0.0046 21.4 6.9 54 147-210 39-92 (95)
200 2wvr_A Geminin; DNA replicatio 32.3 1.7E+02 0.0058 24.1 7.5 31 47-77 109-139 (209)
201 1dh3_A Transcription factor CR 31.3 62 0.0021 20.9 3.9 27 167-193 24-50 (55)
202 2xdj_A Uncharacterized protein 30.6 1.4E+02 0.0048 20.9 10.1 44 67-110 20-63 (83)
203 2dq3_A Seryl-tRNA synthetase; 29.8 57 0.0019 29.5 4.8 24 74-97 75-98 (425)
204 1kd8_A GABH AIV, GCN4 acid bas 29.5 93 0.0032 18.5 5.3 29 64-92 5-33 (36)
205 1kd8_B GABH BLL, GCN4 acid bas 29.3 94 0.0032 18.5 5.2 29 63-91 4-32 (36)
206 3mtu_E Head morphogenesis prot 28.9 1.5E+02 0.0051 20.7 6.8 43 27-69 32-74 (77)
207 3fx0_A NF-kappa-B essential mo 28.8 11 0.00037 27.7 -0.2 72 139-210 19-93 (96)
208 1d7m_A Cortexillin I; coiled-c 28.3 1.7E+02 0.0058 21.1 14.8 28 156-183 72-99 (101)
209 1uo4_A General control protein 28.0 97 0.0033 18.3 4.0 28 167-194 3-30 (34)
210 2q6q_A Spindle POLE BODY compo 27.8 1.5E+02 0.0051 20.3 7.3 57 135-191 8-64 (74)
211 1vcs_A Vesicle transport throu 27.4 1.4E+02 0.0049 21.3 5.8 55 150-204 37-92 (102)
212 1fzc_A Fibrin; blood coagulati 26.6 1.1E+02 0.0037 21.8 4.7 44 51-94 5-48 (87)
213 1wlq_A Geminin; coiled-coil; 2 26.5 1.5E+02 0.0053 20.9 5.5 34 31-64 30-63 (83)
214 2wq1_A General control protein 25.7 1.1E+02 0.0036 18.0 4.3 23 169-191 4-26 (33)
215 3he4_A Synzip6; heterodimeric 25.0 1.4E+02 0.0046 18.9 5.5 37 39-75 17-53 (56)
216 3l4q_C Phosphatidylinositol 3- 24.7 2.7E+02 0.0091 22.2 13.9 54 153-206 98-151 (170)
217 2akf_A Coronin-1A; coiled coil 24.1 1E+02 0.0035 17.6 3.4 14 75-88 14-27 (32)
218 3pdy_A Plectin; cytoskeleton, 23.8 2.7E+02 0.0091 21.9 18.2 81 44-128 79-171 (210)
219 2w6a_A ARF GTPase-activating p 23.4 1.7E+02 0.0058 19.5 7.0 46 84-129 16-61 (63)
220 3oa7_A Head morphogenesis prot 23.3 1.6E+02 0.0056 24.2 5.9 44 84-127 33-76 (206)
221 1zxa_A CGMP-dependent protein 23.3 1.6E+02 0.0055 19.9 4.9 17 61-77 33-49 (67)
222 3hhm_B NISH2 P85alpha; PI3KCA, 22.6 4E+02 0.014 23.5 15.6 60 160-219 200-259 (373)
223 2xu6_A MDV1 coiled coil; prote 22.6 1.9E+02 0.0066 19.8 9.0 47 22-68 4-50 (72)
224 3vmx_A Voltage-gated hydrogen 21.8 1.6E+02 0.0055 18.7 7.0 38 65-102 2-39 (48)
225 1ik9_A DNA repair protein XRCC 21.7 3.3E+02 0.011 22.2 13.1 72 27-104 127-198 (213)
226 2z5i_A TM, general control pro 21.5 1.6E+02 0.0056 18.6 6.0 34 156-189 10-43 (52)
227 3iox_A AGI/II, PA; alpha helix 21.3 5E+02 0.017 24.2 15.5 39 142-180 64-102 (497)
228 3a2a_A Voltage-gated hydrogen 21.0 1.8E+02 0.0063 19.0 5.6 42 170-211 9-50 (58)
229 3bbp_D GRIP and coiled-coil do 20.6 1.7E+02 0.0059 20.0 4.6 45 44-88 20-64 (71)
230 3mud_A DNA repair protein XRCC 20.6 3.2E+02 0.011 21.9 7.0 44 25-68 128-171 (175)
231 1fmh_A General control protein 20.4 1.3E+02 0.0045 17.1 4.4 29 167-195 3-31 (33)
232 3htk_B Structural maintenance 20.3 2E+02 0.0069 19.2 8.3 62 92-153 8-69 (73)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.26 E-value=5.4e-08 Score=80.95 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=30.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q psy5037 149 KDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYK 216 (224)
Q Consensus 149 ~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~ 216 (224)
....+..+...+..+...+..++..+..+......+...+..+...+..+......+...+..+....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (284)
T 1c1g_A 200 VTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKY 267 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444444444444444444444444443333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.24 E-value=8.7e-08 Score=79.69 Aligned_cols=45 Identities=13% Similarity=0.243 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy5037 17 TTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQE 61 (224)
Q Consensus 17 ~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~e 61 (224)
..++..+..+++.+......+...+..+...+..+......+...
T Consensus 12 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 56 (284)
T 1c1g_A 12 KLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDE 56 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333333333333333333333333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.63 E-value=1.3e-07 Score=97.30 Aligned_cols=47 Identities=19% Similarity=0.156 Sum_probs=22.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy5037 10 EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNM 56 (224)
Q Consensus 10 ~~~~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~ 56 (224)
.++......++..++..|..+...+..+...+..++..+..+.....
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555444444444444444444444433333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.59 E-value=9.8e-08 Score=98.16 Aligned_cols=14 Identities=21% Similarity=0.119 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q psy5037 24 KYELNNLELERNRA 37 (224)
Q Consensus 24 r~ql~~lr~~r~~a 37 (224)
..++..+...+..+
T Consensus 884 e~~l~~Le~e~~~l 897 (1184)
T 1i84_S 884 EQKHTQLCEEKNLL 897 (1184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.45 E-value=0.0001 Score=63.62 Aligned_cols=63 Identities=14% Similarity=0.056 Sum_probs=40.3
Q ss_pred hhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 124 EMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGE 186 (224)
Q Consensus 124 e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~ 186 (224)
+++.+..++..+..++..++..|.+.+..++.++..+..+...+..+..+|...+.+.+....
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~ 153 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVK 153 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666777777777777766666666666666666666655544443
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.36 E-value=0.00014 Score=62.78 Aligned_cols=155 Identities=14% Similarity=0.163 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy5037 25 YELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHL 104 (224)
Q Consensus 25 ~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~ 104 (224)
.+|+.++..+..+-.++..++..+..+......+...+.+...++..++..+..+...+.+.+..+.... =..+|
T Consensus 18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-----~~kE~ 92 (256)
T 3na7_A 18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-----SEREL 92 (256)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-----SSSHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CHHHH
Confidence 3444455555555555555555555555544444444444444444444444444444444444443211 23455
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 105 KFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRL 184 (224)
Q Consensus 105 ~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l 184 (224)
..+..++..+..++..++.++.++.-.++.+...+..+...+......+..... .+...++.+..++..+..+|..+
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~---~~~~~~~e~~~e~~~l~~~r~~l 169 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELES---LVENEVKNIKETQQIIFKKKEDL 169 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666555555444444444444444444433333333222 23334455555555555555555
Q ss_pred HHH
Q psy5037 185 GEE 187 (224)
Q Consensus 185 ~~d 187 (224)
...
T Consensus 170 ~~~ 172 (256)
T 3na7_A 170 VEK 172 (256)
T ss_dssp HHT
T ss_pred Hhc
Confidence 443
No 7
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.82 E-value=0.0027 Score=49.47 Aligned_cols=117 Identities=18% Similarity=0.131 Sum_probs=87.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q psy5037 83 VQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEE 162 (224)
Q Consensus 83 ~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~ 162 (224)
+++.+..+..++.++..|.+.+.........++..+..+..+.|.+...+.+-.+-.++.+.........-..++.+|..
T Consensus 8 ~~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~e 87 (129)
T 2fxo_A 8 SAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKE 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777788888888888888888887776777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 163 LSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTML 199 (224)
Q Consensus 163 l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld 199 (224)
+...+...++....|...+..+..++..++..++.+.
T Consensus 88 l~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 88 MNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777776666666553
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.60 E-value=0.022 Score=47.18 Aligned_cols=102 Identities=16% Similarity=0.134 Sum_probs=46.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh----hhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q psy5037 88 EILSKKESERLDLLKHLKFISQETAELENNNHSLDGE----MKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEEL 163 (224)
Q Consensus 88 ~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e----~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l 163 (224)
..|...++.+.+|......+..+++.|=.++.+.-++ +|.+.-++..+...+..+...|-+.+.+-..++.+.-..
T Consensus 49 ~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~ 128 (189)
T 2v71_A 49 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 128 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3344444444444444444444444444444444433 444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 164 SHVTAQLETQVQCCQEEKYRLGEELA 189 (224)
Q Consensus 164 ~~~~~~lE~EL~~lk~er~~l~~dL~ 189 (224)
..++..++..+-.+-+...=|..+|.
T Consensus 129 ~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 129 IMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.59 E-value=0.023 Score=47.17 Aligned_cols=131 Identities=20% Similarity=0.221 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q psy5037 16 ATTEIDRFKYELNNLELERNRAQSEVRRLQ----TELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCE----VQRIE 87 (224)
Q Consensus 16 ~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq----~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E----~~rlE 87 (224)
-......+.++++++...-++....-+-|. .+|..+...+..+...+..+..+++.++.+......+ +..+.
T Consensus 15 wk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq 94 (189)
T 2v71_A 15 WKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLE 94 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566677777766666666665544 4445555566666666666666666666666666555 55555
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Q psy5037 88 EILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALV 146 (224)
Q Consensus 88 ~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I 146 (224)
..|...-..+..|...++.|...-+++|+..+.+.+-+..+.--+-.+-++++-|+.++
T Consensus 95 ~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El 153 (189)
T 2v71_A 95 DDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESEL 153 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554455555555444445544444444444333333333334444443333
No 10
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.57 E-value=0.021 Score=46.01 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=74.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q psy5037 82 EVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLE 161 (224)
Q Consensus 82 E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~ 161 (224)
||+++++.+.+-+.-...-..++..|..++..+-+++.+++.--....-.-..+.++|..|...+.+.+..-+.-+..+.
T Consensus 22 EvaR~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~ 101 (155)
T 2efr_A 22 EVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 101 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444443332221111244566777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5037 162 ELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLAD 211 (224)
Q Consensus 162 ~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~ 211 (224)
.|.+.+..++.+|...+.....+..+|..+=.....+.+....|+..++.
T Consensus 102 kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~ 151 (155)
T 2efr_A 102 KLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVAR 151 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 77777777777777777777777776666655555555555555555443
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.14 E-value=0.056 Score=41.83 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 16 ATTEIDRFKYELNNLELERNRAQSEVRRLQTELY 49 (224)
Q Consensus 16 ~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~ 49 (224)
..-++..|+-.|......+..+...+..+.....
T Consensus 18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~ 51 (129)
T 2fxo_A 18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKN 51 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443333333333333333333333
No 12
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=96.87 E-value=0.056 Score=40.22 Aligned_cols=92 Identities=15% Similarity=0.071 Sum_probs=65.5
Q ss_pred hhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 120 SLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTML 199 (224)
Q Consensus 120 ~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld 199 (224)
.+...++.++++...+..+...++..+......-...+..+.+|++++.-++.+|..+...-......|...........
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE 85 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhc
Q psy5037 200 RQKEELRLQLAD 211 (224)
Q Consensus 200 ~~~e~l~~qL~~ 211 (224)
+.+..|++.+.-
T Consensus 86 ~ev~~L~Rriql 97 (101)
T 3u1c_A 86 SEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766543
No 13
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=96.87 E-value=0.024 Score=45.12 Aligned_cols=139 Identities=20% Similarity=0.211 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5037 39 SEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNN 118 (224)
Q Consensus 39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~ 118 (224)
..|.-+.++|+...........+|+......++-...+..+-..-..-+..|..++....+....+.....-.+.+..++
T Consensus 3 Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl 82 (147)
T 2b9c_A 3 RRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKL 82 (147)
T ss_dssp --------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34566778888888888888888888888888877777776666666666666666666665555555555555555555
Q ss_pred hhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 119 HSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCC 177 (224)
Q Consensus 119 ~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~l 177 (224)
.-+++++.-..-....+..++..|+..+....+.+++++..=.....+...++..++.|
T Consensus 83 ~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L 141 (147)
T 2b9c_A 83 VIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARL 141 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence 55555555444344555666677777777777777777776666666677776666554
No 14
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.86 E-value=0.13 Score=41.33 Aligned_cols=75 Identities=12% Similarity=0.163 Sum_probs=31.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy5037 51 MNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEM 125 (224)
Q Consensus 51 ~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~ 125 (224)
+.+++.......+.++..+.+|...++.+..-+..++.-=..-...-....+++..|...+...|.|+..++-.+
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv 100 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSV 100 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444445555555555444444433322222223344444444444444444444443333
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.81 E-value=0.057 Score=55.29 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=6.0
Q ss_pred HHHhhhhhhhhhhhhh
Q psy5037 113 ELENNNHSLDGEMKSC 128 (224)
Q Consensus 113 ~lE~r~~~lE~e~nel 128 (224)
.++.++.+++.++..+
T Consensus 981 ~~~~~v~~L~~e~~~l 996 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKL 996 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 16
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.79 E-value=0.98 Score=51.11 Aligned_cols=185 Identities=11% Similarity=0.112 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5037 30 LELERNRAQSEVRRLQTELY---DMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKF 106 (224)
Q Consensus 30 lr~~r~~a~~E~~rlq~dL~---~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~ 106 (224)
+..++.++.....|++.=|+ .+...+..++.+|...+..++.-..+......+|..-...-+.+... ....-..
T Consensus 1908 l~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~---v~~~~~~ 1984 (3245)
T 3vkg_A 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKD---ARELQVQ 1984 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 46666777777777764333 34455555555555555555555554444444443322222211111 1111122
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy5037 107 ISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRL-- 184 (224)
Q Consensus 107 l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l-- 184 (224)
+..+......+-..++.++++.. +..=++.+++.++.+....+......+.+|.++...+..|..++..+..++..+
T Consensus 1985 ~~~~~~ei~~~k~~~e~dL~~A~-Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~ 2063 (3245)
T 3vkg_A 1985 LDVRNKEIAVQKVKAYADLEKAE-PTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKT 2063 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333333344444444421 112224455555555555555555555555555555555555555544444444
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHh
Q psy5037 185 -----GEELAGCQETLDTMLRQKEELRLQLADTENYKTK 218 (224)
Q Consensus 185 -----~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~ 218 (224)
..-|..+..+...|.+.+.+=..++..+......
T Consensus 2064 e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~ 2102 (3245)
T 3vkg_A 2064 ESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMST 2102 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHh
Confidence 4445555666777777777776666666554443
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.79 E-value=0.77 Score=51.93 Aligned_cols=92 Identities=11% Similarity=0.132 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 107 ISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGE 186 (224)
Q Consensus 107 l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~ 186 (224)
++.++..++..+..+...++..+-.+..++.+++.++.+........+.++.+++....++..-+.=+.+|-+|+.+=..
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~ 2091 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQ 2091 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHH
Confidence 34555566666666666666666666666666666666666666666666677776666666666667777777766666
Q ss_pred HHHHHHHHHHHH
Q psy5037 187 ELAGCQETLDTM 198 (224)
Q Consensus 187 dL~~~re~~~kl 198 (224)
.+.........|
T Consensus 2092 ~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2092 QSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 666655555444
No 18
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=96.78 E-value=0.11 Score=39.62 Aligned_cols=41 Identities=15% Similarity=0.366 Sum_probs=30.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 14 KLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQH 54 (224)
Q Consensus 14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e 54 (224)
.+.+.+|..||+||+.+...+.-+.-++..++..++++...
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~K 56 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 56 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678899999999988877766666666666666666553
No 19
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=96.76 E-value=0.078 Score=39.43 Aligned_cols=92 Identities=15% Similarity=0.200 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHH
Q psy5037 57 TIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESE 136 (224)
Q Consensus 57 ~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~ 136 (224)
.|..++..+..+.++.......+...+..++.....++.++..|...+.-+..+++.++.++..+...+.........+.
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE 85 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555556666666666665555555555555555444444433334444
Q ss_pred HHHHHHHHHHHh
Q psy5037 137 KKVMKLEALVQD 148 (224)
Q Consensus 137 ~ri~~le~~I~e 148 (224)
..+++|.++|+-
T Consensus 86 ~ev~~L~Rriql 97 (101)
T 3u1c_A 86 SEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555554443
No 20
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.74 E-value=0.11 Score=41.71 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Q psy5037 68 EAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENN-NHSLDGEMKSCKNLLAESEKKVMKLEALV 146 (224)
Q Consensus 68 eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r-~~~lE~e~nel~le~~~~~~ri~~le~~I 146 (224)
++..+..++..+..++.++-..+..--.-+.........+..|+++|=.. +..+..=.+..+.+...++.|+..|+.++
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql 124 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQL 124 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555554444333333333333333333333333211 11122222334666677788888888888
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037 147 QDKDCSIKSLEAKLEELSHVTAQLET 172 (224)
Q Consensus 147 ~e~~~~i~~~e~qL~~l~~~~~~lE~ 172 (224)
.+....+..++.|+..|..-+..|+.
T Consensus 125 ~e~~~~l~~lq~ql~~LK~v~~~m~~ 150 (154)
T 2ocy_A 125 REKDTLLDTLTLQLKNLKKVMHSLDN 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88888888888888888776554443
No 21
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=96.66 E-value=0.097 Score=38.78 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=67.6
Q ss_pred hhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 121 LDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLR 200 (224)
Q Consensus 121 lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~ 200 (224)
+.-.++.++++...+.++...++..+......-...+..+.++++.+.-++.++..+...-......|...........+
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777777777777777777777788888778888777777777777777777777777777
Q ss_pred HHHHHHHHHhc
Q psy5037 201 QKEELRLQLAD 211 (224)
Q Consensus 201 ~~e~l~~qL~~ 211 (224)
.+..|++.+--
T Consensus 87 evasLnRriql 97 (101)
T 3u59_A 87 EVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776643
No 22
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=96.65 E-value=0.09 Score=38.97 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHH
Q psy5037 57 TIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESE 136 (224)
Q Consensus 57 ~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~ 136 (224)
.|..++..+..+.++.......+-..+..++.....++.++..|...+..+..+++..+.++..+...+.........+.
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE 85 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555555555555555555555555555444444444455
Q ss_pred HHHHHHHHHHHh
Q psy5037 137 KKVMKLEALVQD 148 (224)
Q Consensus 137 ~ri~~le~~I~e 148 (224)
..+++|.++|+-
T Consensus 86 ~evasLnRriql 97 (101)
T 3u59_A 86 AEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 23
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.45 E-value=0.28 Score=39.86 Aligned_cols=120 Identities=13% Similarity=0.184 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q psy5037 92 KKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLE 171 (224)
Q Consensus 92 ~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE 171 (224)
..+.-+.+|-+.+..|...-..|+..+.++.+.+..-+..+.-..+.+.+++. .|.++...+..++.+...+.
T Consensus 45 ~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~-------ri~~L~~El~~~k~~~~k~~ 117 (168)
T 3o0z_A 45 QLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQA-------RITSLQEEVKHLKHNLEKVE 117 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555544444333444444433 44444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhchHHHHHh
Q psy5037 172 TQVQCCQEEKYRLGEELAGCQ-ETLDTMLRQKEELRLQLADTENYKTK 218 (224)
Q Consensus 172 ~EL~~lk~er~~l~~dL~~~r-e~~~kld~~~e~l~~qL~~~~~~~~~ 218 (224)
.+-+.|++....+..+.+++. ++-.+|..--.++.........++++
T Consensus 118 ~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~~~H~~Tkar 165 (168)
T 3o0z_A 118 GERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHKVTKAR 165 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554444444444443 22334444445555555555554443
No 24
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=96.36 E-value=0.13 Score=39.75 Aligned_cols=69 Identities=20% Similarity=0.187 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELR 206 (224)
Q Consensus 135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~ 206 (224)
+...+++|+..|.+.+. .|..++..+...+..||.+|..++.+-.....++..+=.-...||-.+.+-.
T Consensus 55 l~~~~~~LE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 55 VKKQCANLQNAIADAEQ---RGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544433 4667778888888888888888888888888888777777777776655443
No 25
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=96.32 E-value=0.1 Score=40.38 Aligned_cols=72 Identities=11% Similarity=0.083 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRL 207 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~ 207 (224)
.++...+++|+..|.+.+. .|..++..+...+..+|.+|..++.+-.....++..+=.-...||-.+.+-+.
T Consensus 55 ~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 55 QSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555554443 46677888888888888888888888888888888777777777766655443
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.98 E-value=0.046 Score=51.25 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQE 193 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re 193 (224)
..+.+.+..........+..+..++..+......++..+...+.....+..+...++.
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~ 572 (597)
T 3oja_B 515 KERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQ 572 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444333
No 27
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=95.79 E-value=0.43 Score=36.17 Aligned_cols=102 Identities=16% Similarity=0.128 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh----hhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q psy5037 94 ESERLDLLKHLKFISQETAELENNNHSLDGE----MKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQ 169 (224)
Q Consensus 94 E~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e----~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~ 169 (224)
++...+|......|.-+.+.|-.++.+...+ +|.++.++..++.....+...|-+.+.+=.+|+.+--....++..
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD 81 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence 4556778888888888888888888887654 666888888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 170 LETQVQCCQEEKYRLGEELAGCQETL 195 (224)
Q Consensus 170 lE~EL~~lk~er~~l~~dL~~~re~~ 195 (224)
|+..+-..-+...=|..+|..-..+.
T Consensus 82 ~E~k~n~aiErnalLE~El~EKe~L~ 107 (111)
T 2v66_B 82 FEQRLNQAIERNAFLESELDEKESLL 107 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888887544443
No 28
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.75 E-value=0.63 Score=37.73 Aligned_cols=108 Identities=12% Similarity=0.103 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy5037 22 RFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLL 101 (224)
Q Consensus 22 ~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Ll 101 (224)
+||.+...+......+..-++-|++.+..+......|..++-.+...++.=+..+...-..+..+++.|..+..++..+.
T Consensus 31 rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k 110 (168)
T 3o0z_A 31 RLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLK 110 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555666666655555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q psy5037 102 KHLKFISQETAELENNNHSLDGEMKSCK 129 (224)
Q Consensus 102 e~~~~l~~e~~~lE~r~~~lE~e~nel~ 129 (224)
..+..+..+...|-.++.+++-+.+++.
T Consensus 111 ~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 111 HNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5555555555555555555555555555
No 29
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=95.53 E-value=0.22 Score=36.01 Aligned_cols=79 Identities=16% Similarity=0.352 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy5037 19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERL 98 (224)
Q Consensus 19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~ 98 (224)
||..||+|++.+...+ .++..+++.+......+..+.++--.-...++ +++..+...++...=-+.
T Consensus 1 Ei~eLr~qi~~l~~e~-------~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E-------~d~~~LrkdvD~a~l~r~ 66 (86)
T 3swk_A 1 EMRELRRQVDQLTNDK-------ARVEVERDNLAEDIMRLREKLQEEMLQREEAE-------NTLQSFRQDVDNASLARL 66 (86)
T ss_dssp CCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHH
Confidence 4567777777666554 44444444444444444445444333333333 333344444444444444
Q ss_pred HHHHHHHHHHHHH
Q psy5037 99 DLLKHLKFISQET 111 (224)
Q Consensus 99 ~Lle~~~~l~~e~ 111 (224)
+|..++.+|.+++
T Consensus 67 dLE~kvesL~eEl 79 (86)
T 3swk_A 67 DLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.32 E-value=0.28 Score=35.19 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5037 27 LNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69 (224)
Q Consensus 27 l~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~el 69 (224)
|+.+..++..|...|..|+..++++...+..+..+...+....
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~ 50 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQR 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5677788888888888888888888888887777777644433
No 31
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.23 E-value=0.92 Score=36.28 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=56.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH-hHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q psy5037 83 VQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL-AESEKKVMKLEALVQDKDCSIKSLEAKLE 161 (224)
Q Consensus 83 ~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~-~~~~~ri~~le~~I~e~~~~i~~~e~qL~ 161 (224)
+..+.......+.+...|...+..-..--...|.....+++++-++--.+ ..+..=|+.....-...+.....++.++.
T Consensus 46 ~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~ 125 (154)
T 2ocy_A 46 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR 125 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556666666666666655555566666666666666665555 55566666555555555555555666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5037 162 ELSHVTAQLETQVQCCQ 178 (224)
Q Consensus 162 ~l~~~~~~lE~EL~~lk 178 (224)
+....+..+...|..|+
T Consensus 126 e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 126 EKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66655555555555554
No 32
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.21 E-value=0.63 Score=35.72 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=33.4
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 145 LVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQET 194 (224)
Q Consensus 145 ~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~ 194 (224)
.+.++...|..++.+|..++..+...-.+...|-+=+-.|..++..-|.+
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRkL 125 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRKL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666777777777776666666667777777777766665554
No 33
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=95.01 E-value=0.28 Score=35.51 Aligned_cols=58 Identities=21% Similarity=0.172 Sum_probs=36.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHH
Q psy5037 84 QRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMK 141 (224)
Q Consensus 84 ~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~ 141 (224)
++.+..+..++.++..|.+.|.........++.++..+..+.|.+...+..+.++...
T Consensus 10 ~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~ 67 (89)
T 3bas_A 10 ARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEE 67 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4556666667777777777777777777777777777777777666553333333333
No 34
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.88 E-value=0.9 Score=34.40 Aligned_cols=93 Identities=20% Similarity=0.280 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHh
Q psy5037 58 IQQELEASRTEAEDVKLQLQHYCC----EVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLA 133 (224)
Q Consensus 58 l~~ele~~e~eleeLk~~~~~~~~----E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~ 133 (224)
|......+..+++.++.+...... .+..+...|...-..+..|...++.|...-++||...+.+-+-+..+---+-
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n 87 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLN 87 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHH
Confidence 333334444444444444333332 2444444444444444444444444444444444444444443333333333
Q ss_pred HHHHHHHHHHHHHHhHH
Q psy5037 134 ESEKKVMKLEALVQDKD 150 (224)
Q Consensus 134 ~~~~ri~~le~~I~e~~ 150 (224)
.+-+|++-|+.+|.+..
T Consensus 88 ~aiErnalLE~El~EKe 104 (111)
T 2v66_B 88 QAIERNAFLESELDEKE 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566666666665443
No 35
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=94.82 E-value=0.65 Score=33.56 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=53.0
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Q psy5037 143 EALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKT 217 (224)
Q Consensus 143 e~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~ 217 (224)
+.++......+..+...+..-.....+|+.....+-.++..|...+..+.+.|..|..++..|..++..++.+.+
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444555555555555555556666666666666666666999999999999999999999999887754
No 36
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.76 E-value=0.75 Score=35.41 Aligned_cols=51 Identities=24% Similarity=0.240 Sum_probs=35.0
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 145 LVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETL 195 (224)
Q Consensus 145 ~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~ 195 (224)
.+.++...|..++.+|..++..+...-.+...|-+=+-.|..++..-|.+.
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455666666677777777777777776777777777777777777666553
No 37
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=94.72 E-value=0.51 Score=33.43 Aligned_cols=69 Identities=19% Similarity=0.083 Sum_probs=38.2
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 123 GEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGC 191 (224)
Q Consensus 123 ~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~ 191 (224)
..++.++++...+.++...++..+..........+..+.++.+.+.-++.+|..+.+........|...
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555666666555555555555555555444443
No 38
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=94.67 E-value=0.26 Score=39.08 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=70.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5037 48 LYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEIL-------SKKESERLDLLKHLKFISQETAELENNNHS 120 (224)
Q Consensus 48 L~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i-------~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~ 120 (224)
|..++..+..+...-+++..-..-|...-..+...|..++..+ ...+....++.-.+..+..++.+.+.|+..
T Consensus 19 l~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~ 98 (147)
T 2b9c_A 19 LATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAEL 98 (147)
T ss_dssp TTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444433333333333333333 333444555666667777777777788888
Q ss_pred hhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q psy5037 121 LDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELS 164 (224)
Q Consensus 121 lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~ 164 (224)
+++.+..+.-++-.+-+.+.+++..-..+-.....|+.+|..|+
T Consensus 99 aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~ 142 (147)
T 2b9c_A 99 SEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLK 142 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 88888877777777778888888777777777888888776554
No 39
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=94.65 E-value=0.59 Score=33.67 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy5037 40 EVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNH 119 (224)
Q Consensus 40 E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~ 119 (224)
|++.|+..+..++.++..+..++.-....+++++.+.+.-..-=. ..|.++..|..-.+.+.-.-.+||.++.
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~-------~~E~d~~~LrkdvD~a~l~r~dLE~kve 73 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQRE-------EAENTLQSFRQDVDNASLARLDLERKVE 73 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 356788888888888888888888887777777765544333322 3344444555555555556677888888
Q ss_pred hhhhhhhhhh
Q psy5037 120 SLDGEMKSCK 129 (224)
Q Consensus 120 ~lE~e~nel~ 129 (224)
++..+++=++
T Consensus 74 sL~eEl~fLk 83 (86)
T 3swk_A 74 SLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 8877776554
No 40
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=94.62 E-value=0.36 Score=34.73 Aligned_cols=75 Identities=13% Similarity=0.068 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLA 210 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~ 210 (224)
.+++..+++++..|.+.+. .|..++..+...+..++.+|..++.+-.....++..+=.-...||..+.+-+.-|.
T Consensus 6 e~L~~q~~~Le~~l~e~E~---~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 6 SQLQCQLAAKEAKLRDLED---SLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp ------CTTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 3444555555555555555 56778888888888888888888888888888888888888888877776665554
No 41
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.47 E-value=1.2 Score=33.87 Aligned_cols=39 Identities=15% Similarity=0.353 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy5037 26 ELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEA 64 (224)
Q Consensus 26 ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~ 64 (224)
.|..+++..+.+..++.++..+++.+......+..+.+.
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~ 59 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 59 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 455566666666666666666666665555555555443
No 42
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=94.35 E-value=0.88 Score=33.64 Aligned_cols=80 Identities=19% Similarity=0.297 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH----------------------hHHHHHHHHHHHHHHhHHhhHHHH
Q psy5037 99 DLLKHLKFISQETAELENNNHSLDGEMKSCKNLL----------------------AESEKKVMKLEALVQDKDCSIKSL 156 (224)
Q Consensus 99 ~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~----------------------~~~~~ri~~le~~I~e~~~~i~~~ 156 (224)
.+..+|..++..+..+...+..++..++++.+-+ ....+=+..++.++......|..+
T Consensus 10 ~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~l 89 (117)
T 2zqm_A 10 AMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNAL 89 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544444333 234566677777777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5037 157 EAKLEELSHVTAQLETQVQCCQ 178 (224)
Q Consensus 157 e~qL~~l~~~~~~lE~EL~~lk 178 (224)
+.++..+...+.++...|..+.
T Consensus 90 e~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 90 ERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888777654
No 43
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.14 E-value=0.97 Score=35.35 Aligned_cols=63 Identities=11% Similarity=0.099 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEE 162 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~ 162 (224)
+.+.|-.+..+...++..+..++.++.+++.++.+++.++..+..++......+..++.++..
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666667777777777766666666666665555555555555554444444444433333
No 44
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=94.07 E-value=0.075 Score=50.80 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy5037 32 LERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQET 111 (224)
Q Consensus 32 ~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~ 111 (224)
..+.-|..+--+.+.+-..+..+. ..=+..+.+..+|..++..+-.++.+....+..-+.....|-++...+.+++
T Consensus 304 qm~~~a~e~~~~~~~e~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~ 379 (575)
T 2i1j_A 304 QMKAQAREEKLAKQAQREKLQLEI----AARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAK 379 (575)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443322 2335667778999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 112 AELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA 189 (224)
Q Consensus 112 ~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~ 189 (224)
..|+.+...++-....+......-......|+.++.+....+..+..+..........+..+|...+.........|.
T Consensus 380 ~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~ 457 (575)
T 2i1j_A 380 EELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALL 457 (575)
T ss_dssp --------------------------------------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988887777666677777888888888888877777777777777777777777776655555553
No 45
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=94.07 E-value=0.96 Score=31.97 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy5037 58 IQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGE 124 (224)
Q Consensus 58 l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e 124 (224)
|..++.....+.+....+.......+...+......+.++..|...+..+..+++..+.++..+...
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~k 70 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444555555555555555555555555554444433
No 46
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.91 E-value=1.2 Score=31.86 Aligned_cols=66 Identities=29% Similarity=0.284 Sum_probs=45.0
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 140 MKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEEL 205 (224)
Q Consensus 140 ~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l 205 (224)
..|+.+|.+.-..|.-+...+++|+..-..|..+...++..|+.+..+...++.....-++++..+
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777777777777766666666666666666665555555444
No 47
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=93.72 E-value=1.3 Score=31.56 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=61.6
Q ss_pred hHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 131 LLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLA 210 (224)
Q Consensus 131 e~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~ 210 (224)
++.++.+.+++|+..|.+.+. .|..++..+...+..++.+|..++.+-.....++..+=.-...||-.+.+-+.-|.
T Consensus 2 el~~l~~~~~sLE~~l~e~e~---~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEE---NFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 345667788888888876654 45778888889999999999999999999988988888888888887777665554
Q ss_pred c
Q psy5037 211 D 211 (224)
Q Consensus 211 ~ 211 (224)
.
T Consensus 79 G 79 (84)
T 1gk4_A 79 G 79 (84)
T ss_dssp C
T ss_pred C
Confidence 3
No 48
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=93.69 E-value=1.6 Score=32.64 Aligned_cols=94 Identities=13% Similarity=0.108 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037 20 IDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD 99 (224)
Q Consensus 20 ~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~ 99 (224)
-+-.-.||...+...+++......|.+.+..+. .....+..+-...++.++.++..-..+|..+.+.++....+...
T Consensus 10 ~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~---~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~ 86 (107)
T 2no2_A 10 NAEVTKQVSMARQAQVDLEREKKELEDSLERIS---DQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEAN 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788888889999999999999999988 56667888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy5037 100 LLKHLKFISQETAELEN 116 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~ 116 (224)
|...+..+..+...|..
T Consensus 87 l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 87 WAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999888888887765
No 49
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.22 E-value=1 Score=35.23 Aligned_cols=90 Identities=19% Similarity=0.162 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHH
Q psy5037 65 SRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEA 144 (224)
Q Consensus 65 ~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~ 144 (224)
...++..|...+..-..--..++......+.|..+|+..+ =++++. =.+..+.+...++.|+..++.
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL---FeEAN~----------MVa~ar~~~~~~e~r~~~L~~ 110 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL---FDEANN----------LVADARMEKYAIEILNKRLTE 110 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH---HHHHHH----------HHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444333444445555555555555555432 111111 112236666667778888888
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHH
Q psy5037 145 LVQDKDCSIKSLEAKLEELSHVT 167 (224)
Q Consensus 145 ~I~e~~~~i~~~e~qL~~l~~~~ 167 (224)
.+.+....|.+++.||..|..-+
T Consensus 111 ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 111 QLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp TTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888776543
No 50
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.04 E-value=0.23 Score=38.97 Aligned_cols=97 Identities=16% Similarity=0.161 Sum_probs=54.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH-hHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q psy5037 83 VQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL-AESEKKVMKLEALVQDKDCSIKSLEAKLE 161 (224)
Q Consensus 83 ~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~-~~~~~ri~~le~~I~e~~~~i~~~e~qL~ 161 (224)
.+.+...+..++.+...|...+..-..--...|.....++.++-++--.+ ..+..=|+.....-...+.....++.++.
T Consensus 34 l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~ 113 (135)
T 2e7s_A 34 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLR 113 (135)
T ss_dssp HHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444556666666666666655556666677777777766666666 56666666666666666666677777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5037 162 ELSHVTAQLETQVQCCQE 179 (224)
Q Consensus 162 ~l~~~~~~lE~EL~~lk~ 179 (224)
+....+..+...|..|+.
T Consensus 114 e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 114 EKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777766666666653
No 51
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=92.87 E-value=1.3 Score=32.26 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQC 176 (224)
Q Consensus 135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~ 176 (224)
..+=+..++.++......|..++.++..+...+.++...|..
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556677777777777777777777777777777776653
No 52
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.80 E-value=1.9 Score=33.67 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=7.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q psy5037 90 LSKKESERLDLLKHLKFISQE 110 (224)
Q Consensus 90 i~~kE~E~~~Lle~~~~l~~e 110 (224)
+....+++.+|.+++..+..+
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 53
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=92.63 E-value=2.1 Score=34.09 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy5037 66 RTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSC 128 (224)
Q Consensus 66 e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel 128 (224)
...+..|+..+......+..++..+..|.+-+..|.+++..+.-++..+|.++..++.+...+
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666677777777777777777777777777777777777777777777777775543
No 54
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=92.07 E-value=1.9 Score=34.36 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy5037 36 RAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHL 104 (224)
Q Consensus 36 ~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~ 104 (224)
...+.+..|+..+.....++..+..+|......++.+..++..+..+..-+++.+..++.|+..|.++.
T Consensus 65 ~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 65 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888888888888888888888899999999999999999999999999999998877654
No 55
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.98 E-value=2.8 Score=30.92 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHHh
Q psy5037 133 AESEKKVMKLEALVQD 148 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e 148 (224)
..++.++..|..+|.+
T Consensus 79 ~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 79 YAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3334444444444433
No 56
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.93 E-value=2.9 Score=30.89 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 18 TEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIE 87 (224)
Q Consensus 18 ~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE 87 (224)
.+..++|.+|+.+.....+...++.+|+.+|..-......++......+.++++|-..+=+-...|-.-.
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a 74 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA 74 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999888777766666665433
No 57
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=91.29 E-value=3.3 Score=30.36 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=12.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 149 KDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179 (224)
Q Consensus 149 ~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~ 179 (224)
+...+..+..++..+...+..++.++..+..
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444433333
No 58
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=91.24 E-value=3.3 Score=30.27 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=24.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037 53 QHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETA 112 (224)
Q Consensus 53 ~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~ 112 (224)
.+...+..+|...+.+...+..+=..|-.+-+.+.-.+.....++..|..+|.-....++
T Consensus 32 ke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd 91 (96)
T 3q8t_A 32 KNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLD 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444444444444444444444444333333
No 59
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=90.28 E-value=4.6 Score=30.37 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Q psy5037 138 KVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLET---QVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTEN 214 (224)
Q Consensus 138 ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~---EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~ 214 (224)
.++.|..++...+.++.....+|..++..+..... .+.-|+..-.--..|-.+=|..+.++.+.|+.|..++..+..
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence 35566666666666666666666666666666666 566777888888889999999999999999999999988776
Q ss_pred HHHhh
Q psy5037 215 YKTKE 219 (224)
Q Consensus 215 ~~~~l 219 (224)
....|
T Consensus 105 q~~~l 109 (110)
T 2v4h_A 105 EFNKL 109 (110)
T ss_dssp HHTTC
T ss_pred HHHhc
Confidence 55443
No 60
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=90.13 E-value=2.1 Score=31.34 Aligned_cols=68 Identities=7% Similarity=-0.008 Sum_probs=46.1
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 139 VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQL 209 (224)
Q Consensus 139 i~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL 209 (224)
+++++..|.+.+. .|..++..+...+..++.+|..++.+-.....++..+=.-...|+..+.+-..-|
T Consensus 21 ~~~LE~~l~e~E~---~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 21 SRACLERIQELED---LLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433 4566777777788888888888888888888888777777777776666555444
No 61
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=89.29 E-value=7 Score=35.32 Aligned_cols=74 Identities=14% Similarity=0.222 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 102 KHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ 178 (224)
Q Consensus 102 e~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk 178 (224)
+-..-|...++++..++.+++...+.+.+-.-.+. ++|+.++++....|++++.+|..+...+..++.+++.++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALM---ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445677888888888888888888876554432 466677777777777777777777777777777766654
No 62
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=88.75 E-value=5 Score=28.58 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=30.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037 47 ELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLK 102 (224)
Q Consensus 47 dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle 102 (224)
+.+.+..++..|.-++++.+++.-..+.++.+...|++.+...+..++.++.-|.+
T Consensus 20 ~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~ 75 (81)
T 3qh9_A 20 KAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33445555555555555555555555555555555555555555555555544443
No 63
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=88.54 E-value=6 Score=29.23 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ 178 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk 178 (224)
..|.++..++|.++-..+...+.|.++|-...=-+|.|+..++
T Consensus 61 ~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~k 103 (114)
T 2xzr_A 61 SARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIK 103 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444445555555555555555555555555555555544443
No 64
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=88.31 E-value=4.4 Score=28.76 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy5037 38 QSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFI 107 (224)
Q Consensus 38 ~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l 107 (224)
..++..+...|..+..+|..++..+..++..+++-+.+......|+.++=+.++-|=.+..+|...+.+|
T Consensus 5 ~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 5 AAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3445555666777777777777777777777777777777777777777777766666666655555443
No 65
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=87.94 E-value=11 Score=34.93 Aligned_cols=69 Identities=14% Similarity=0.188 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTA 168 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~ 168 (224)
|+..-..+...+..|+++++++....++...-...+.......+..+.+....|..|...|+.....+.
T Consensus 91 L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~ 159 (464)
T 1m1j_B 91 LLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIK 159 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Confidence 556666678888888888888876666655445566666777777777777777777777766665554
No 66
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=87.94 E-value=6.2 Score=28.75 Aligned_cols=81 Identities=14% Similarity=0.193 Sum_probs=49.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy5037 48 LYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKS 127 (224)
Q Consensus 48 L~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~ne 127 (224)
.+.+..++..+..+=..+..++..++.....+..++..++.....++.+-...-..|....-++-.+.+...++++.+.-
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~ 85 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRY 85 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556666666666666666666666666666666666666666666666666666555555555555443
Q ss_pred h
Q psy5037 128 C 128 (224)
Q Consensus 128 l 128 (224)
.
T Consensus 86 ~ 86 (96)
T 3q8t_A 86 A 86 (96)
T ss_dssp H
T ss_pred H
Confidence 3
No 67
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=87.70 E-value=6.8 Score=28.99 Aligned_cols=36 Identities=31% Similarity=0.476 Sum_probs=31.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 15 LATTEIDRFKYELNNLELERNRAQSEVRRLQTELYD 50 (224)
Q Consensus 15 ~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~ 50 (224)
.+..++..|++.++.+++.++.+.+++..|...|+.
T Consensus 9 ~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 9 FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356688999999999999999999999999988877
No 68
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=87.58 E-value=6.7 Score=29.16 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037 18 TEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQ 75 (224)
Q Consensus 18 ~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~ 75 (224)
-|=++|-.|+|.+++..++....+..++.++.+...+...+...+..+...+..++.+
T Consensus 23 NEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 23 NEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666665555555555555555555444444444444444444433
No 69
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=86.75 E-value=7.5 Score=28.43 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=61.7
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Q psy5037 139 VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLE---TQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENY 215 (224)
Q Consensus 139 i~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE---~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~ 215 (224)
+..|..++...+.++.+...+|..|...+.... +.+.-|+..-..-..|-.+=|..+.++.+.++.|..++..+...
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 456667777777777778888888888777777 66677788888888888888888888888888888888877655
Q ss_pred HHhh
Q psy5037 216 KTKE 219 (224)
Q Consensus 216 ~~~l 219 (224)
...|
T Consensus 84 ~~~L 87 (94)
T 3jsv_C 84 FNKL 87 (94)
T ss_dssp TC--
T ss_pred HHHH
Confidence 4443
No 70
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=86.63 E-value=8.5 Score=28.92 Aligned_cols=94 Identities=15% Similarity=0.133 Sum_probs=55.0
Q ss_pred cchhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 5 LNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQ 84 (224)
Q Consensus 5 ~~~~~~~~~~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~ 84 (224)
|-.|+++-. .-+|+.|..+|..+.... ...+.+++.+..++......+ ..+.=|+.++.-|...-.
T Consensus 14 ~~~~~~~~~---~~ei~~L~~~L~~AEeaL-------~~Kq~~idelk~ei~q~~~~l----E~I~vLkaQv~IY~~DF~ 79 (110)
T 2v4h_A 14 LVPRGSHMA---SMQLEDLRQQLQQAEEAL-------VAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQ 79 (110)
T ss_dssp CCCTTCCSS---CCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHHHHH
T ss_pred CCcchhHhh---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHc
Confidence 444444433 336777777766654443 335555555555444433333 346667777777877776
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037 85 RIEEILSKKESERLDLLKHLKFISQETA 112 (224)
Q Consensus 85 rlE~~i~~kE~E~~~Lle~~~~l~~e~~ 112 (224)
.=.+.-...-.++..|..++..|..++.
T Consensus 80 aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 80 AERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6666666666666667777776665544
No 71
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=86.40 E-value=11 Score=34.25 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQV 174 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL 174 (224)
..++.++..|+..|......|..++.-|..+...|.+||..+
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888888888888888888888888888888877
No 72
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=86.37 E-value=4.6 Score=28.67 Aligned_cols=39 Identities=21% Similarity=0.054 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 159 KLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDT 197 (224)
Q Consensus 159 qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~k 197 (224)
+|+.-...-..+..+|+.+.+--+-...+|..+|.-..+
T Consensus 35 ~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 35 SLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444433
No 73
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=84.44 E-value=9 Score=27.24 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 32 LERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILS 91 (224)
Q Consensus 32 ~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~ 91 (224)
.+-+++.+|+.-|...++.|..+.---+.+|.....++..|+.++..-.++|.++.+.+.
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 334577888888888888888888888888888888888888888888888888877664
No 74
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.20 E-value=14 Score=34.83 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy5037 134 ESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQ 173 (224)
Q Consensus 134 ~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~E 173 (224)
.|+.++..|+.+|......|..++.-|..+...|.+||..
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666666665544
No 75
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=83.51 E-value=12 Score=28.09 Aligned_cols=47 Identities=9% Similarity=0.220 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~ 179 (224)
.++.+=+.-++++|......+..++.++..++..+..+...|+++..
T Consensus 84 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 84 KNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44577778888888888888888888888888888888888887754
No 76
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=82.89 E-value=10 Score=26.86 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=43.8
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 143 EALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLD 196 (224)
Q Consensus 143 e~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~ 196 (224)
...+.++...|..++.+|..++..+...-.+.+.|-+=+..|..++..-|.+..
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 345667777888888888888888888888888888888888888888887765
No 77
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=82.75 E-value=4.8 Score=31.72 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhcCC
Q psy5037 154 KSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKESAP 222 (224)
Q Consensus 154 ~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l~~~ 222 (224)
.++...|...+.....++.+|..+..+...+..++..+.+..--.+.+...+.+.|.+......++.+.
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKqlEad 137 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQVEKD 137 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566666666666666666666666666666665556666666666666666665555543
No 78
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=81.97 E-value=33 Score=31.88 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=22.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 52 NQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEIL 90 (224)
Q Consensus 52 ~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i 90 (224)
..-+..|...+...+..+.++...+..|..+|.+....|
T Consensus 120 ~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 120 YQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 333444555566666666666666666666665555444
No 79
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=81.86 E-value=16 Score=28.39 Aligned_cols=45 Identities=7% Similarity=0.045 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 37 AQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCC 81 (224)
Q Consensus 37 a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~ 81 (224)
+..++..+...+......+..+...+..+....++|...+..+..
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~ 78 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQ 78 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333444444444444444433
No 80
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=81.66 E-value=11 Score=26.46 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=40.9
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 145 LVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLD 196 (224)
Q Consensus 145 ~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~ 196 (224)
.+.++.+.|..++.+|..++..+...-.+.+.|-+=+-.|..++..-|.+..
T Consensus 27 ~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 4566777778888888888888888888888888888888888888777654
No 81
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=81.66 E-value=11 Score=30.83 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5037 23 FKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69 (224)
Q Consensus 23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~el 69 (224)
+..||+..-.-++.+..||..|...++....++..+..++...+...
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556555555556666666666666655554444444444444433
No 82
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=81.49 E-value=10 Score=25.89 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ 178 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk 178 (224)
..++..+...+..+-..+...+.+|.+++..+..|+.+|..++
T Consensus 34 ~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 34 KSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455555555666666666666666666666666666665554
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.75 E-value=32 Score=31.02 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=19.9
Q ss_pred hHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q psy5037 131 LLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQL 170 (224)
Q Consensus 131 e~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~l 170 (224)
+...+.++.+.++..|.+...+|.+....+-.+..+...+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (487)
T 3oja_A 443 KETQLAEENARLKKLNGEADLALASANATLQELVVREQNL 482 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHH
Confidence 3334444555555555555555555555555554444443
No 84
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=80.45 E-value=9.4 Score=27.11 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy5037 97 RLDLLKHLKFISQETAELENNNHSLDG 123 (224)
Q Consensus 97 ~~~Lle~~~~l~~e~~~lE~r~~~lE~ 123 (224)
...++.++..+..+++.+..|+..|+.
T Consensus 58 ~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 58 TQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666555543
No 85
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=79.73 E-value=13 Score=25.81 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy5037 68 EAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDG 123 (224)
Q Consensus 68 eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~ 123 (224)
-+.-|+..++....+|.++++.+.-+.+-.+.|.+++=++.-|-+-|..|+..+..
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 56778888888888889999999888888888999999988888888888776653
No 86
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=79.52 E-value=18 Score=27.27 Aligned_cols=93 Identities=17% Similarity=0.214 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy5037 19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERL 98 (224)
Q Consensus 19 e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~ 98 (224)
+...|+.||..+...+.++... |...-++....+..|...+..++..+.+|..........|. ....
T Consensus 14 ~~~ql~~qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq----------~qL~ 80 (112)
T 1x79_B 14 MLRQANDQLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQ----------EQMA 80 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH
Confidence 4445555555555555544444 44444445555555555555555555555554444433332 2233
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy5037 99 DLLKHLKFISQETAELENNNHSLDGE 124 (224)
Q Consensus 99 ~Lle~~~~l~~e~~~lE~r~~~lE~e 124 (224)
.|+..-..+..++.+|..-++.|-|.
T Consensus 81 ~Lt~~Re~V~~eL~rLQ~eNd~L~Gk 106 (112)
T 1x79_B 81 VLMQSREQVSEELVRLQKDNDSLQGK 106 (112)
T ss_dssp HHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhh
Confidence 34555555555555555555555544
No 87
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=78.74 E-value=14 Score=25.67 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5037 44 LQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKF 106 (224)
Q Consensus 44 lq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~ 106 (224)
+...|..+..+|..++..+..++..+++-+.+......++.++=+.++-|=.+..+|...+.+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344556666666677777777777777777777777777776666666655555555544443
No 88
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=78.71 E-value=18 Score=26.86 Aligned_cols=88 Identities=15% Similarity=0.223 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH----hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 99 DLLKHLKFISQETAELENNNHSLDGEMKSCKNLL----AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQV 174 (224)
Q Consensus 99 ~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~----~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL 174 (224)
+...++.........++.-...++..+..+..+- ..-...+.++..+|......+..+...++.....-..+...+
T Consensus 12 E~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~ 91 (107)
T 2no2_A 12 EVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEF 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433222 223455666666777777777777777777777777777777
Q ss_pred HHHHHHHHHHHH
Q psy5037 175 QCCQEEKYRLGE 186 (224)
Q Consensus 175 ~~lk~er~~l~~ 186 (224)
..+..+|..+..
T Consensus 92 ~~l~~Ek~~L~~ 103 (107)
T 2no2_A 92 AELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHh
Confidence 777777766654
No 89
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=78.52 E-value=17 Score=26.53 Aligned_cols=80 Identities=14% Similarity=0.138 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5037 26 ELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLK 105 (224)
Q Consensus 26 ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~ 105 (224)
|++.+......+..-....+.+++.+..++......+ ..+.=|+.++.-|...-..=.+.-...-.+...|..++.
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~----E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~ 78 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE 78 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444444555555555556666666666444444333 344556666666666555444444444444444444444
Q ss_pred HHHH
Q psy5037 106 FISQ 109 (224)
Q Consensus 106 ~l~~ 109 (224)
.+..
T Consensus 79 ~lq~ 82 (94)
T 3jsv_C 79 QLQR 82 (94)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.39 E-value=38 Score=30.51 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHH
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMK 141 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~ 141 (224)
.-+++..+.++-.+++.-+++++..+.+....+..+..+.+.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (487)
T 3oja_A 440 YQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQN 481 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444333
No 91
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=77.40 E-value=13 Score=25.91 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy5037 73 KLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQET 111 (224)
Q Consensus 73 k~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~ 111 (224)
+..++.-..++..-++.|..+++++.+....+..|..++
T Consensus 25 q~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 25 QYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 92
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=77.19 E-value=20 Score=27.21 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy5037 20 IDRFKYELNNLE 31 (224)
Q Consensus 20 ~~~lr~ql~~lr 31 (224)
|..|++.++.++
T Consensus 17 Ie~Lkreie~lk 28 (120)
T 3i00_A 17 IERLYREISGLK 28 (120)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333443333333
No 93
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=77.05 E-value=12 Score=24.20 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 40 EVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEIL 90 (224)
Q Consensus 40 E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i 90 (224)
.+..++..+..+.+........+......+..+...+..+..+|..+.+.|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555554443
No 94
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.04 E-value=50 Score=31.18 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=24.8
Q ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 141 KLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETL 195 (224)
Q Consensus 141 ~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~ 195 (224)
+|++.|.-....|...=.+| .-|..-|+.+.-+..+|..|+....+-|
T Consensus 114 ELRRrIqyLKekVdnQlsnI-------rvLQsnLedq~~kIQRLEvDIdiqirsC 161 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHI-------QLLQKNVRAQLVDMKRLEVDIDIKIRSC 161 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555555444444444 4444444444555555666666655555
No 95
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=76.60 E-value=20 Score=26.38 Aligned_cols=103 Identities=16% Similarity=0.268 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037 93 KESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLET 172 (224)
Q Consensus 93 kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~ 172 (224)
.+..+.++++-+=.++.+..++..-+-..++.+.+-.--+..--..++..-+..++|.+.+.++..||.+=.+.+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aa 83 (114)
T 2xzr_A 4 IEDKIEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIED 83 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44556666666677777777777777777777666555555445678888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 173 QVQCCQEEKYRLGEELAGCQETL 195 (224)
Q Consensus 173 EL~~lk~er~~l~~dL~~~re~~ 195 (224)
....|=...--+..++..++.++
T Consensus 84 qsaaLlsk~yh~ene~ar~kkl~ 106 (114)
T 2xzr_A 84 KIEEILSKIYHIENEIARIKKLI 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 99998888888888887777654
No 96
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=76.57 E-value=14 Score=25.88 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~ 179 (224)
.+|+..|+.++.-.+..|+.+...+..-...+..|...|+.|.+
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444433
No 97
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=76.04 E-value=14 Score=24.11 Aligned_cols=42 Identities=5% Similarity=0.118 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5037 28 NNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69 (224)
Q Consensus 28 ~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~el 69 (224)
++|....+.+...+..|+.++..+..+++....+-.....++
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444444444444444444433333333
No 98
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=74.99 E-value=14 Score=23.89 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 152 SIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLR 200 (224)
Q Consensus 152 ~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~ 200 (224)
++..++..+......+.....++..++..-..+..++..+++.+.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444433
No 99
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=74.45 E-value=4.9 Score=26.25 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=14.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 47 ELYDMNQHNMTIQQELEASRTEAEDVKLQLQ 77 (224)
Q Consensus 47 dL~~~~~e~~~l~~ele~~e~eleeLk~~~~ 77 (224)
|.+.+..++..++.++..+..++++++.++.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444443
No 100
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=74.08 E-value=24 Score=26.11 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=43.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy5037 150 DCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADT 212 (224)
Q Consensus 150 ~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~ 212 (224)
.+.-.++-=|+.-|...+.++++.+.+++.+......++...+..|+.|...+..+..+|..-
T Consensus 22 DNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 22 DNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444566666666677777777777777777777777888888888887777777543
No 101
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=73.81 E-value=30 Score=26.96 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q psy5037 16 ATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQ----------- 84 (224)
Q Consensus 16 ~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~----------- 84 (224)
.+.++.+|.++|+......+...+-.+.=+...+.+..++-.-+++|..+.++..-+...++....-+.
T Consensus 16 L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSl 95 (167)
T 4gkw_A 16 LKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSL 95 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhh
Confidence 466788888888876665555555555555555555555555555555555555554444444433333
Q ss_pred ------HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037 85 ------RIEEILSKKESERLDLLKHLKFISQETA 112 (224)
Q Consensus 85 ------rlE~~i~~kE~E~~~Lle~~~~l~~e~~ 112 (224)
.+++.+..|+.=...|+.-+.-|+.+++
T Consensus 96 DiRKLrELEADLKEKDsMVe~LT~TiG~LrKELE 129 (167)
T 4gkw_A 96 DMRKLGELEADLKEKDSMVESLTETIGILRKELE 129 (167)
T ss_dssp HHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555554443
No 102
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=73.78 E-value=53 Score=30.45 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH-----HHHHHH
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTA-----QLETQV 174 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~-----~lE~EL 174 (224)
|+.+-..+...+..|++.++++....++...-...++.-....+..+.+.+..+..|...|++...-+. ..+.-|
T Consensus 86 L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i 165 (461)
T 3ghg_B 86 LLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNL 165 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHH
T ss_pred HHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHH
Confidence 777888888888888888888888888877766777777777777777777777777777766544433 344444
Q ss_pred HHHHHHHH
Q psy5037 175 QCCQEEKY 182 (224)
Q Consensus 175 ~~lk~er~ 182 (224)
+.|+.--.
T Consensus 166 ~~l~~~~~ 173 (461)
T 3ghg_B 166 RVLRSILE 173 (461)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
No 103
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=72.46 E-value=28 Score=26.16 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhH
Q psy5037 80 CCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDK 149 (224)
Q Consensus 80 ~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~ 149 (224)
..=+++....++.+++...--.+-+++++.++-+-|-|+-++.|++.=.+.=++.++..|......|.-.
T Consensus 59 D~~LSk~~~aldekekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqisekdakinkl 128 (142)
T 1pl5_A 59 DIVLSKAASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKL 128 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHH
Confidence 3445778888999999999999999999999999999999999999888777788877777766666544
No 104
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=72.25 E-value=20 Score=24.38 Aligned_cols=64 Identities=13% Similarity=0.239 Sum_probs=36.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 20 IDRFKYELNN-LELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRI 86 (224)
Q Consensus 20 ~~~lr~ql~~-lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rl 86 (224)
|.-+|.|++. +.+.+.++.. -++..++.+......-...+.....++.+|+..++.+..++..+
T Consensus 11 l~eiRaQYE~ia~knr~EaE~---~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 11 MRDVRQQYESVAAKNLQEAEE---WYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556677776 3344444432 34455555555555555556666666666666666666665544
No 105
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=71.84 E-value=26 Score=25.40 Aligned_cols=78 Identities=18% Similarity=0.185 Sum_probs=45.0
Q ss_pred HhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 115 ENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQET 194 (224)
Q Consensus 115 E~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~ 194 (224)
|+.+.++.+...++...+..++. ....++..+...|..++.+|..++..+...-.+-..|-+-+-.+..++..-|.+
T Consensus 11 ~~~~~~Lq~~~~~LE~~l~e~E~---~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkL 87 (95)
T 3mov_A 11 ENLYFQGQKESRACLERIQELED---LLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKL 87 (95)
T ss_dssp -------CCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333322232 223356667777777777777777777777777777777777888887777766
Q ss_pred H
Q psy5037 195 L 195 (224)
Q Consensus 195 ~ 195 (224)
.
T Consensus 88 L 88 (95)
T 3mov_A 88 L 88 (95)
T ss_dssp H
T ss_pred H
Confidence 4
No 106
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=71.60 E-value=7.5 Score=36.91 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037 33 ERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETA 112 (224)
Q Consensus 33 ~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~ 112 (224)
.+..+.++-..++..|-.+..+....+..|..++.....|..++...-.+-..|+..-...+.++..|.....+-.++-.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~ 408 (575)
T 2i1j_A 329 ARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQ 408 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555444444444444
Q ss_pred HHHhhhhhhhhhhhhhh
Q psy5037 113 ELENNNHSLDGEMKSCK 129 (224)
Q Consensus 113 ~lE~r~~~lE~e~nel~ 129 (224)
.|+..+..++..+.-+.
T Consensus 409 ~l~~~~~~~~~~~~~~~ 425 (575)
T 2i1j_A 409 KLEDEIRAKQEEVSRIQ 425 (575)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555554444444433
No 107
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=71.23 E-value=26 Score=25.20 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q psy5037 97 RLDLLKHLKFISQETAELENNNHSLDGEMKSCK 129 (224)
Q Consensus 97 ~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~ 129 (224)
+..|+++|.+-=.-+..||..+..|+.++..++
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345788888888888888888888887776553
No 108
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=70.25 E-value=32 Score=25.84 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTA----QLETQVQCCQEEKYRLGEELAGCQETLDTML 199 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~----~lE~EL~~lk~er~~l~~dL~~~re~~~kld 199 (224)
.....+...+|+.+...+..-+..|.+|+...+ .+-..|..|...|..+...|..+...-+-|.
T Consensus 37 ~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 37 KQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 344455555555555555555555555555443 3455677777777777777777766665554
No 109
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=69.25 E-value=68 Score=29.19 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy5037 79 YCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSL 121 (224)
Q Consensus 79 ~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~l 121 (224)
...++.+++..+...+..+..|...+..+...+..|...+..+
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443333333
No 110
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=69.07 E-value=21 Score=23.37 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5037 153 IKSLEAKLEELSHVTAQLETQV 174 (224)
Q Consensus 153 i~~~e~qL~~l~~~~~~lE~EL 174 (224)
...++.+-..|...+..|..++
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 111
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=68.59 E-value=51 Score=27.50 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 136 EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRL 184 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l 184 (224)
..||..++..+.+|+..|-.-+..|..+.-++-..|..+-.++-+...+
T Consensus 83 e~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~l 131 (242)
T 3c9i_A 83 EARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSAL 131 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhh
Confidence 4555555555555555555555555555555555555554444443333
No 112
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=68.32 E-value=21 Score=23.05 Aligned_cols=35 Identities=11% Similarity=0.306 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 43 RLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQ 77 (224)
Q Consensus 43 rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~ 77 (224)
.++..+..+...|..|..-+..+..++..|+.++.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555554443
No 113
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=67.83 E-value=22 Score=22.99 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 166 VTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEEL 205 (224)
Q Consensus 166 ~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l 205 (224)
....+...+..+-.....|-..|..+|..+.+|...++.|
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555666666666666666777777766666666655
No 114
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=67.28 E-value=31 Score=24.48 Aligned_cols=43 Identities=12% Similarity=0.247 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 43 RLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQR 85 (224)
Q Consensus 43 rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~r 85 (224)
.++..|..+...+..+..+|.+++....+|..++.....+|..
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666655555555555444444444433
No 115
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=66.71 E-value=31 Score=24.39 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 42 RRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQ 84 (224)
Q Consensus 42 ~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~ 84 (224)
-.++..|+.+..++..|...++....++..|+.+-.++-.+++
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666555554443
No 116
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=66.42 E-value=33 Score=26.39 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~ 179 (224)
.++.+=+.-++++|......+..++..+..++..+..++..|..+..
T Consensus 94 ~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 94 RSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777788888888888888888888888888888888777654
No 117
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=65.97 E-value=30 Score=23.94 Aligned_cols=23 Identities=13% Similarity=-0.077 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 169 QLETQVQCCQEEKYRLGEELAGC 191 (224)
Q Consensus 169 ~lE~EL~~lk~er~~l~~dL~~~ 191 (224)
.+..+|+.+.+--+-...+|..+
T Consensus 39 ~~~~Elk~~~e~Ld~KI~eL~el 61 (72)
T 3cve_A 39 AFRSNLKTLLEILDGKIFELTEL 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Confidence 33333333333333333333333
No 118
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=65.85 E-value=44 Score=31.15 Aligned_cols=28 Identities=14% Similarity=0.393 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy5037 37 AQSEVRRLQTELYDMNQHNMTIQQELEA 64 (224)
Q Consensus 37 a~~E~~rlq~dL~~~~~e~~~l~~ele~ 64 (224)
+..+-+.++..++.+..+...+.++|..
T Consensus 75 ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 75 TWQELRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555544
No 119
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=65.64 E-value=70 Score=29.17 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMKSCK 129 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~nel~ 129 (224)
|+.+...+...+..|++.++++..-.++..
T Consensus 29 L~kye~~V~~~l~~L~~~l~~isn~Ts~~~ 58 (411)
T 3ghg_C 29 LSTYQTKVDKDLQSLEDILHQVENKTSEVK 58 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccchhhHHHHHHHHHHHHHhhhhHHH
Confidence 556666666666666666666665555543
No 120
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=65.40 E-value=51 Score=26.95 Aligned_cols=45 Identities=16% Similarity=0.314 Sum_probs=27.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 47 ELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILS 91 (224)
Q Consensus 47 dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~ 91 (224)
-+..+..++..+..+++....++..|+.++++....+....+.++
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 344555566666666666666666666666666666665555553
No 121
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=64.87 E-value=78 Score=28.29 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5037 58 IQQELEASRTEAEDVKLQL 76 (224)
Q Consensus 58 l~~ele~~e~eleeLk~~~ 76 (224)
|+++|.+.+.-+-+++.+.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~ 420 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQA 420 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHh
Confidence 3344444444444444433
No 122
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=64.77 E-value=46 Score=25.58 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhH
Q psy5037 81 CEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDK 149 (224)
Q Consensus 81 ~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~ 149 (224)
.=+++....++.+++...--.+-+++|+.++-+-|-|+-++.|++.=.+.=++.++..|......|.-+
T Consensus 84 ~~LSk~~~aldekekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqisekdakinkl 152 (166)
T 1nyh_A 84 IVLSKAASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKL 152 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHH
Confidence 345778888999999999999999999999999999999999999887777777777776666666543
No 123
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=64.39 E-value=36 Score=24.21 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q psy5037 133 AESEKKVMKLEALVQDKDCSIKSLEAKLEELSHV 166 (224)
Q Consensus 133 ~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~ 166 (224)
..+..++..++..|......+..++.++..+...
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555555443
No 124
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=64.37 E-value=33 Score=23.76 Aligned_cols=44 Identities=23% Similarity=0.279 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy5037 23 FKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASR 66 (224)
Q Consensus 23 lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e 66 (224)
++.++..++.....-..+|++|++-+.=-....+.+..+|=...
T Consensus 16 ~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislN 59 (75)
T 3a7o_A 16 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGT 59 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhH
Confidence 33344444444444444444444444444444444444443333
No 125
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=64.20 E-value=27 Score=25.33 Aligned_cols=79 Identities=18% Similarity=0.260 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5037 42 RRLQTELYDMNQHNMTIQQELEASRTEAE-DVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHS 120 (224)
Q Consensus 42 ~rlq~dL~~~~~e~~~l~~ele~~e~ele-eLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~ 120 (224)
.||.+-|+-+..+-..+..+......... +++-++..-++||.-+...+..+|..-..|...|+ ++|.+|-..+++
T Consensus 10 ~Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YE---eEI~rLr~eLe~ 86 (92)
T 3vp9_A 10 NKLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYE---EEIKHLKLGLEQ 86 (92)
T ss_dssp -------CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 47777788888888888888888777765 89999999999999999999999998888888774 456655555544
Q ss_pred hhh
Q psy5037 121 LDG 123 (224)
Q Consensus 121 lE~ 123 (224)
..+
T Consensus 87 r~~ 89 (92)
T 3vp9_A 87 RDH 89 (92)
T ss_dssp ---
T ss_pred cCC
Confidence 433
No 126
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=63.84 E-value=85 Score=28.39 Aligned_cols=23 Identities=4% Similarity=0.235 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhh
Q psy5037 103 HLKFISQETAELENNNHSLDGEM 125 (224)
Q Consensus 103 ~~~~l~~e~~~lE~r~~~lE~e~ 125 (224)
+++.|+..++.+=.+|..||..|
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 127
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=63.70 E-value=38 Score=24.30 Aligned_cols=36 Identities=8% Similarity=0.199 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 79 YCCEVQRIEEILSKKESERLDLLKHLKFISQETAEL 114 (224)
Q Consensus 79 ~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~l 114 (224)
|-.+|..+...|.....++..|.-+++.+..++.++
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 128
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=63.26 E-value=10 Score=32.54 Aligned_cols=40 Identities=10% Similarity=0.327 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 40 EVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHY 79 (224)
Q Consensus 40 E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~ 79 (224)
.++.++..+..+...+..|...+..+..++..|+.++..+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666666666666666666666655443
No 129
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=62.17 E-value=7 Score=33.50 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=17.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 46 TELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQR 85 (224)
Q Consensus 46 ~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~r 85 (224)
.++..+...+..+....+.+...+..++.++..+..|+.+
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443
No 130
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=61.90 E-value=16 Score=30.88 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 134 ESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179 (224)
Q Consensus 134 ~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~ 179 (224)
++..|++++++.|+..+..+.++......+.+++..++.-|+++-+
T Consensus 3 ~lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d 48 (233)
T 2yko_A 3 SLRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWD 48 (233)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666665555566666666665555543
No 131
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=61.74 E-value=41 Score=24.02 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 29 NLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCC 81 (224)
Q Consensus 29 ~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~ 81 (224)
++++.++-.-.....++.....+..+|..|..+|..+..++..|+.-+-.+-+
T Consensus 26 AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 26 AVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 46666666666666777777777777777777777777777776665554433
No 132
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=61.65 E-value=54 Score=25.35 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5037 169 QLETQVQCCQEEKYRLGEELAG 190 (224)
Q Consensus 169 ~lE~EL~~lk~er~~l~~dL~~ 190 (224)
.++.....+....-.+...|+.
T Consensus 118 ~~~~~~~e~~~~~~~~ek~ls~ 139 (155)
T 2oto_A 118 RATALEKELEEKKKALELAIDQ 139 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333433
No 133
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=60.91 E-value=32 Score=22.49 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy5037 39 SEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKL 74 (224)
Q Consensus 39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~ 74 (224)
..+..|+.....+..++..|..++..+..++..|+.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555544
No 134
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=59.64 E-value=76 Score=26.44 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=30.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHh
Q psy5037 87 EEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQD 148 (224)
Q Consensus 87 E~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e 148 (224)
+..|...+.+..+=..++-.-...+..+|.|+-..++++..++.....++.++..++.+|..
T Consensus 83 e~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isa 144 (242)
T 3c9i_A 83 EARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISA 144 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhh
Confidence 44444444444444444444445555666666666666666554444444444444444443
No 135
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=59.63 E-value=24 Score=23.21 Aligned_cols=37 Identities=14% Similarity=0.271 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy5037 38 QSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKL 74 (224)
Q Consensus 38 ~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~ 74 (224)
...+..|+.....+..++..|..++..+..++..|+.
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555554443
No 136
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=58.93 E-value=29 Score=24.20 Aligned_cols=44 Identities=7% Similarity=0.016 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ 178 (224)
Q Consensus 135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk 178 (224)
++.+++-++.-|.+....+-....+|..|+..+.-|-+.|+.+.
T Consensus 19 LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 19 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566666666666666666666666666666666666665554
No 137
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=58.92 E-value=97 Score=28.80 Aligned_cols=36 Identities=11% Similarity=-0.021 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q psy5037 96 ERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNL 131 (224)
Q Consensus 96 E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le 131 (224)
+...|..+...+..++..++.....++.++..+.+.
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~ 152 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALR 152 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566666666666666666666666666555443
No 138
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=57.74 E-value=36 Score=30.72 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 154 KSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEEL 188 (224)
Q Consensus 154 ~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL 188 (224)
.+++..|..+...+..+...|......|..+...+
T Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 20 AALKEKIKDTELGMKELNEILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333444443333
No 139
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=57.31 E-value=47 Score=23.27 Aligned_cols=22 Identities=14% Similarity=0.294 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5037 153 IKSLEAKLEELSHVTAQLETQV 174 (224)
Q Consensus 153 i~~~e~qL~~l~~~~~~lE~EL 174 (224)
+.+...-.+.+..++.++|.+|
T Consensus 53 l~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 53 LEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444333
No 140
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=56.86 E-value=48 Score=30.84 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy5037 37 AQSEVRRLQTELYDMNQHNMTIQQELEA 64 (224)
Q Consensus 37 a~~E~~rlq~dL~~~~~e~~~l~~ele~ 64 (224)
+..+-+.++..++.+..+...+.++|..
T Consensus 38 ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 65 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKLNSVQKEIGK 65 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555544443
No 141
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=56.48 E-value=28 Score=21.09 Aligned_cols=27 Identities=37% Similarity=0.404 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 158 AKLEELSHVTAQLETQVQCCQEEKYRL 184 (224)
Q Consensus 158 ~qL~~l~~~~~~lE~EL~~lk~er~~l 184 (224)
+.|.+-+..++.|+..|..|++++..+
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777888888888888887755
No 142
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=56.29 E-value=41 Score=22.29 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy5037 42 RRLQTELYDMNQHNMTIQQELEASRTEAEDVK 73 (224)
Q Consensus 42 ~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk 73 (224)
..++.....+..+|..|..+|..+..++.-|+
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333
No 143
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=55.78 E-value=40 Score=26.46 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=26.1
Q ss_pred hhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 119 HSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTM 198 (224)
Q Consensus 119 ~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kl 198 (224)
.-++..+.++...+...++-+..++..+..+...+.. +......|+++-+-...-|..+..||.+.|+....+
T Consensus 62 ~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~-------LeAE~aKLeEekQIseASRqgLrRDLeASReAKKql 134 (146)
T 2xnx_M 62 NVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQ-------LTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQV 134 (146)
T ss_dssp HHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHGGGTTTC---------------------
T ss_pred hhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555444433 333344455555555556677777777777766554
Q ss_pred H
Q psy5037 199 L 199 (224)
Q Consensus 199 d 199 (224)
.
T Consensus 135 E 135 (146)
T 2xnx_M 135 E 135 (146)
T ss_dssp -
T ss_pred H
Confidence 3
No 144
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=55.39 E-value=42 Score=22.14 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037 39 SEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQ 75 (224)
Q Consensus 39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~ 75 (224)
..+..|+.....+..++..|..+|..+..++..|+.-
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555554443
No 145
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=55.09 E-value=1.3e+02 Score=27.86 Aligned_cols=10 Identities=30% Similarity=0.620 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q psy5037 20 IDRFKYELNN 29 (224)
Q Consensus 20 ~~~lr~ql~~ 29 (224)
|.-|++.|+.
T Consensus 67 I~kLkn~L~~ 76 (491)
T 1m1j_A 67 IDNIRQQLAD 76 (491)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444544443
No 146
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=54.58 E-value=1.3e+02 Score=27.46 Aligned_cols=103 Identities=11% Similarity=0.133 Sum_probs=59.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy5037 14 KLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKK 93 (224)
Q Consensus 14 ~~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~k 93 (224)
+.+.+.|..|...|+.+...=+.+..=|.-+++.......-... -++-+-+.-.+...++.+++..|...
T Consensus 34 ~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~----------n~~~~~q~Skkml~~~~~~~~~~~~~ 103 (411)
T 3ghg_C 34 TKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPN----------MIDAATLKSRKMLEEIMKYEASILTH 103 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTT----------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCc----------chhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555555444444444444444433322211111 01222233335677788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy5037 94 ESERLDLLKHLKFISQETAELENNNHSLDGEMK 126 (224)
Q Consensus 94 E~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~n 126 (224)
+..+..|...+.+.+..+..|...+..+...+.
T Consensus 104 ~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 104 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888888888888777777777766554
No 147
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=54.39 E-value=65 Score=29.52 Aligned_cols=61 Identities=11% Similarity=0.146 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037 39 SEVRRLQTELYDMNQHNMTIQQELEASRT---EAEDVKLQLQHYCCEVQRIEEILSKKESERLD 99 (224)
Q Consensus 39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~---eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~ 99 (224)
.+-+.++..++.+..+...+.++|..+.. +...|..+...+..++..++..+..++.++..
T Consensus 38 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 38 TEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443221 22344444444444444444444444444443
No 148
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=53.48 E-value=52 Score=22.64 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=34.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037 48 LYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLK 102 (224)
Q Consensus 48 L~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle 102 (224)
++.+....+.++.+.+.+...++.++.++.=|=+.+..++..+...+.+...+..
T Consensus 4 m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~ 58 (75)
T 3mtu_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQ 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4445555566666777777777777777777777777777766665544433333
No 149
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=53.27 E-value=53 Score=29.75 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5037 54 HNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLK 105 (224)
Q Consensus 54 e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~ 105 (224)
+...|..++......+.+++.+.+....++..+...+-..+.++..|-+++.
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555554444444444444333
No 150
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=52.91 E-value=71 Score=24.05 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 157 EAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLD 196 (224)
Q Consensus 157 e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~ 196 (224)
..-+..|...+..|+.+|...+..+..+..+...+|....
T Consensus 39 q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 39 QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555556666555555554444444444333
No 151
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=52.58 E-value=69 Score=23.77 Aligned_cols=53 Identities=15% Similarity=0.303 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy5037 42 RRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE 94 (224)
Q Consensus 42 ~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE 94 (224)
--++..|+....++..+..++.+....++.|+.++.=|=+-+..+|-.+..-.
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~ 59 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQ 59 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666667777777777777777777777777777777777776543
No 152
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=52.47 E-value=61 Score=29.17 Aligned_cols=51 Identities=20% Similarity=0.310 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5037 55 NMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLK 105 (224)
Q Consensus 55 ~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~ 105 (224)
+..+..+|..++.++.+++..++.+..++..+...+...+..+..|-.++.
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~ 55 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQ 55 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555555544444333
No 153
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=52.21 E-value=44 Score=21.88 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5037 170 LETQVQCCQEEKYRLGEELAG 190 (224)
Q Consensus 170 lE~EL~~lk~er~~l~~dL~~ 190 (224)
|+.++..|..+...|...+..
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~ 47 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANM 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 154
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=51.15 E-value=59 Score=22.64 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy5037 29 NLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKL 74 (224)
Q Consensus 29 ~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~ 74 (224)
++++.++-.-.....++.....+..+|..|..+|..+..++.-|+.
T Consensus 26 AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 26 AVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666677777777777777666666665553
No 155
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=51.14 E-value=1.1e+02 Score=25.83 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=31.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy5037 47 ELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFIS 108 (224)
Q Consensus 47 dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~ 108 (224)
+|+-+.-+-.-+..+|.+....+..|...++.+...++.++..=..++.++..+.+++..+.
T Consensus 164 ~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 164 SLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444455555555555555555555555555555555555555555444443
No 156
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=49.95 E-value=96 Score=28.37 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhH
Q psy5037 97 RLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLL 132 (224)
Q Consensus 97 ~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~ 132 (224)
...|..+...+..++..++..+..++.++..+.+.+
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 106 (455)
T 2dq0_A 71 VDELLAKSREIVKRIGELENEVEELKKKIDYYLWRL 106 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344666666666666666666666666666554443
No 157
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=49.50 E-value=1e+02 Score=28.58 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy5037 27 LNNLELERNRAQSEV 41 (224)
Q Consensus 27 l~~lr~~r~~a~~E~ 41 (224)
+++++.++..+.++|
T Consensus 49 ~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 49 LDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 158
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=49.41 E-value=96 Score=28.78 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 21 DRFKYELNNLELERNRAQSEVRR 43 (224)
Q Consensus 21 ~~lr~ql~~lr~~r~~a~~E~~r 43 (224)
..+..++++++..+..+.++|..
T Consensus 47 r~~~~~~~~l~~~rN~~sk~i~~ 69 (484)
T 3lss_A 47 RRTQFLTEASKKLINICSKAVGA 69 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555544444
No 159
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=49.18 E-value=39 Score=29.84 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy5037 78 HYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLD 122 (224)
Q Consensus 78 ~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE 122 (224)
....++.+++..|...+..+..|...+..+...+..|...+.++.
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444443333
No 160
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=48.94 E-value=66 Score=22.51 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy5037 97 RLDLLKHLKFISQETAELENNNHSLDG 123 (224)
Q Consensus 97 ~~~Lle~~~~l~~e~~~lE~r~~~lE~ 123 (224)
+..|..++.++..-..+++.++..++.
T Consensus 46 ~e~l~~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 46 KDVLQGELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 161
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=48.50 E-value=67 Score=22.51 Aligned_cols=59 Identities=12% Similarity=0.197 Sum_probs=48.0
Q ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 141 KLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTML 199 (224)
Q Consensus 141 ~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld 199 (224)
-+.+.+.++.+.++++...=.+|..--..|+.-+..+..+...+...+..++..-..|.
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888888888888888888888888888888888887777666554
No 162
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=48.27 E-value=18 Score=24.94 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037 72 VKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENN 117 (224)
Q Consensus 72 Lk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r 117 (224)
|-.++......+.-+-+.+..-|.-+.-|+++..-|..||.++|..
T Consensus 20 l~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERn 65 (71)
T 3bbp_D 20 LVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERN 65 (71)
T ss_dssp ---------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444455566777777777888888888888888888865
No 163
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=47.85 E-value=43 Score=20.07 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=21.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 49 YDMNQHNMTIQQELEASRTEAEDVKLQLQH 78 (224)
Q Consensus 49 ~~~~~e~~~l~~ele~~e~eleeLk~~~~~ 78 (224)
-++..++..++..|+....++..|+.+-..
T Consensus 3 ~~~L~ENekLhk~ie~KdeeIa~Lk~eN~e 32 (37)
T 1t6f_A 3 YEALKENEKLHKEIEQKDNEIARLKKENKE 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 455677788888888888888777766544
No 164
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=47.59 E-value=43 Score=21.57 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 18 TEIDRFKYELNNLELERNRAQSEVRRLQTEL 48 (224)
Q Consensus 18 ~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL 48 (224)
-++..|+++++.++.+...+..++..+...|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555444
No 165
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=47.35 E-value=77 Score=28.62 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy5037 100 LLKHLKFISQETAELENNNHSLDGEMK 126 (224)
Q Consensus 100 Lle~~~~l~~e~~~lE~r~~~lE~e~n 126 (224)
|..+...+..++..++..+..++.++.
T Consensus 69 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 69 LIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444443333
No 166
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=45.52 E-value=75 Score=28.70 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy5037 38 QSEVRRLQTELYDMNQHNMTIQQELEA-SRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD 99 (224)
Q Consensus 38 ~~E~~rlq~dL~~~~~e~~~l~~ele~-~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~ 99 (224)
..+-+.++..++.+..+...+.++|.. ...+...+..+...+..++..++..+..++.++..
T Consensus 34 ~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 34 DREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444432 11223344444444444444444444444444433
No 167
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=45.22 E-value=1.4e+02 Score=25.24 Aligned_cols=73 Identities=14% Similarity=0.184 Sum_probs=58.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 15 LATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIE 87 (224)
Q Consensus 15 ~~~~e~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE 87 (224)
...++..++-++|+-+..++.-+..||+.+-..|+.+..-.+.+-..|..++..=-.|+..+..+...+.-++
T Consensus 153 ~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 153 ALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888889999999999999999999999998888888888888877777777776666655443
No 168
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=44.91 E-value=73 Score=21.91 Aligned_cols=46 Identities=9% Similarity=-0.026 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 162 ELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRL 207 (224)
Q Consensus 162 ~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~ 207 (224)
.+...+..++.+|..++.+-.....++..+=.-...|+-.+..-..
T Consensus 9 ~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRk 54 (74)
T 2xv5_A 9 TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444333
No 169
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=44.55 E-value=63 Score=21.06 Aligned_cols=43 Identities=12% Similarity=0.023 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 164 SHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELR 206 (224)
Q Consensus 164 ~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~ 206 (224)
...+..++.+|..++.+-.....++..+=.-...|+..+.+-.
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444445555555555555555555555555555554444433
No 170
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=43.93 E-value=2e+02 Score=26.68 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 134 ESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQ 175 (224)
Q Consensus 134 ~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~ 175 (224)
.++.++.-+++.|..+-..|..+..-|..+...|..||..+.
T Consensus 115 eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 115 ELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777777777777777777766543
No 171
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=43.73 E-value=93 Score=22.77 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhHHhhH
Q psy5037 136 EKKVMKLEALVQDKDCSI 153 (224)
Q Consensus 136 ~~ri~~le~~I~e~~~~i 153 (224)
.+.+..|..+|.-....+
T Consensus 74 ~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 74 REDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444443333
No 172
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=43.42 E-value=83 Score=22.09 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=18.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy5037 47 ELYDMNQHNMTIQQELEASRTEAEDVKLQL 76 (224)
Q Consensus 47 dL~~~~~e~~~l~~ele~~e~eleeLk~~~ 76 (224)
-|.++..+|..|+..|+....++..|+.+-
T Consensus 28 AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN 57 (79)
T 2zxx_A 28 ALYEALKENEKLHKEIEQKDSEIARLRKEN 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666666553
No 173
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=42.27 E-value=69 Score=20.86 Aligned_cols=51 Identities=22% Similarity=0.208 Sum_probs=42.0
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 146 VQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLD 196 (224)
Q Consensus 146 I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~ 196 (224)
+.++.+.|..++.+|..++..+...-.+-+.|-+=+..+..++..-|.+..
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 456778888888888888888888888888888888888888888877654
No 174
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=41.57 E-value=67 Score=20.48 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 171 ETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLA 210 (224)
Q Consensus 171 E~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~ 210 (224)
+..|..++.=...|-..+..+...|++++..+++|++-|-
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 3456777777888888899999999999999999987664
No 175
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=41.54 E-value=89 Score=21.88 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhhHH
Q psy5037 43 RLQTELYDMNQHNMT 57 (224)
Q Consensus 43 rlq~dL~~~~~e~~~ 57 (224)
+++..+....+++++
T Consensus 15 rl~E~~~q~qaEl~s 29 (78)
T 3iv1_A 15 RMKEEMDRAQAELNA 29 (78)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHH
Confidence 344444444444333
No 176
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=40.67 E-value=2.2e+02 Score=26.39 Aligned_cols=30 Identities=17% Similarity=0.018 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037 36 RAQSEVRRLQTELYDMNQHNMTIQQELEAS 65 (224)
Q Consensus 36 ~a~~E~~rlq~dL~~~~~e~~~l~~ele~~ 65 (224)
.+..+-+.++..++.+..+...+.++|...
T Consensus 41 ~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~ 70 (484)
T 3lss_A 41 EADKKWRRTQFLTEASKKLINICSKAVGAK 70 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555443
No 177
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=40.20 E-value=88 Score=21.49 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=47.8
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 142 LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDT 197 (224)
Q Consensus 142 le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~k 197 (224)
+..+...+...|..++.+|..++..+...-.+.+.|-+=+-.|..++..-|.+..-
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEG 58 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEG 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888899999999999999988888888888999999999999888877653
No 178
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=39.85 E-value=68 Score=22.76 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy5037 33 ERNRAQSEVRRLQTELYDMNQHNMTIQQELE 63 (224)
Q Consensus 33 ~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele 63 (224)
...++..||..|...++....++..++.+.+
T Consensus 40 AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~ 70 (83)
T 1uii_A 40 ALYEALKENEKLHKEIEQKDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444444443333
No 179
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=39.44 E-value=1e+02 Score=21.92 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=17.0
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q psy5037 143 EALVQDKDCSIKSLEAKLEELSHVTAQLE 171 (224)
Q Consensus 143 e~~I~e~~~~i~~~e~qL~~l~~~~~~lE 171 (224)
..+|..|...|+.++.+|....+++..|+
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556666666666666666666655554
No 180
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=38.72 E-value=49 Score=19.43 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 167 TAQLETQVQCCQEEKYRLGEELAGCQET 194 (224)
Q Consensus 167 ~~~lE~EL~~lk~er~~l~~dL~~~re~ 194 (224)
+..||..+.+|-.++..|..++..++.+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4456666666666666666666666554
No 181
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=38.03 E-value=56 Score=21.67 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 166 VTAQLETQVQCCQEEKYRLGEELAGCQ 192 (224)
Q Consensus 166 ~~~~lE~EL~~lk~er~~l~~dL~~~r 192 (224)
.+..|+.++..|..+...|...+..++
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 182
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=37.98 E-value=61 Score=19.00 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 167 TAQLETQVQCCQEEKYRLGEELAGCQET 194 (224)
Q Consensus 167 ~~~lE~EL~~lk~er~~l~~dL~~~re~ 194 (224)
+..||+.+.++-.++..+..++..++.+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4566666777777777776666666554
No 183
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=37.52 E-value=63 Score=19.05 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 166 VTAQLETQVQCCQEEKYRLGEELAGCQET 194 (224)
Q Consensus 166 ~~~~lE~EL~~lk~er~~l~~dL~~~re~ 194 (224)
++..||..+..|-.++..|..+...++.+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 35566677777777777776666666554
No 184
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=37.46 E-value=85 Score=26.43 Aligned_cols=48 Identities=6% Similarity=0.169 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy5037 29 NLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQL 76 (224)
Q Consensus 29 ~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~ 76 (224)
.+..+.+++...++.+.+.+++++...+..+..|...+.-+.+|....
T Consensus 3 ~lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~i 50 (233)
T 2yko_A 3 SLRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYV 50 (233)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555666666666666666666666665555555555555554443
No 185
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=37.05 E-value=2.6e+02 Score=26.05 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=28.1
Q ss_pred hHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 131 LLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAG 190 (224)
Q Consensus 131 e~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~ 190 (224)
+.+.++.|.+..+.. ++.....|...|+.-.+.+++....|...+.++......+.+
T Consensus 49 eNeaikkrNa~aka~---Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae 105 (497)
T 3iox_A 49 ENTAIKKRNADAKAD---YEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAE 105 (497)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444332 222344455555555555566666666666655555554443
No 186
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=36.53 E-value=66 Score=18.96 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 166 VTAQLETQVQCCQEEKYRLGEELAGCQET 194 (224)
Q Consensus 166 ~~~~lE~EL~~lk~er~~l~~dL~~~re~ 194 (224)
++..||+.+.+|-.++..|..+...++.+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 35556666666666666666666555544
No 187
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=36.32 E-value=76 Score=19.62 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy5037 70 EDVKLQLQHYCCEVQRIEEILSKKESERL 98 (224)
Q Consensus 70 eeLk~~~~~~~~E~~rlE~~i~~kE~E~~ 98 (224)
.+|+.+..+....++.+++.++.+..|+.
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45555555555566666666666666554
No 188
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=35.95 E-value=1.2e+02 Score=21.57 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=26.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 46 TELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYC 80 (224)
Q Consensus 46 ~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~ 80 (224)
.-|.++..+|..|...|+.+..++..|+.......
T Consensus 39 ~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 39 KALYEALKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888877777665544
No 189
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=35.56 E-value=1.2e+02 Score=21.79 Aligned_cols=60 Identities=17% Similarity=0.131 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhhhh-hhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q psy5037 104 LKFISQETAELENNNH-SLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHV 166 (224)
Q Consensus 104 ~~~l~~e~~~lE~r~~-~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~ 166 (224)
|+.+..++..+..... +.|..+++---+...+++.+-.|+. .|...-+.||..|..|+..
T Consensus 23 fe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~---~h~kmKq~YEeEI~rLr~e 83 (92)
T 3vp9_A 23 FLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYEREL---THRKMKDAYEEEIKHLKLG 83 (92)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443 4444455554455555555555553 3444445555555555443
No 190
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=35.52 E-value=1.3e+02 Score=27.06 Aligned_cols=20 Identities=15% Similarity=0.131 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy5037 169 QLETQVQCCQEEKYRLGEEL 188 (224)
Q Consensus 169 ~lE~EL~~lk~er~~l~~dL 188 (224)
.+.++|.....+|..+...+
T Consensus 35 ~~~~~l~~~~~~rr~l~n~~ 54 (412)
T 3u06_A 35 TCKEQLFQSNMERKELHNTV 54 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444333
No 191
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=35.42 E-value=71 Score=22.68 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=12.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy5037 48 LYDMNQHNMTIQQELEASRTEAEDVKL 74 (224)
Q Consensus 48 L~~~~~e~~~l~~ele~~e~eleeLk~ 74 (224)
|.++..+|..|+..|+.+..++..|+.
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~ 59 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRK 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 192
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=35.32 E-value=1.3e+02 Score=21.80 Aligned_cols=58 Identities=10% Similarity=0.213 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 20 IDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQ 77 (224)
Q Consensus 20 ~~~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~ 77 (224)
+++|.+-|..-+..++.+.++...|..-|..+.+++..-+..|.+.+..+++.=.-+.
T Consensus 6 La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~ 63 (101)
T 1d7m_A 6 LAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLE 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4556666666667777888888888888888887777777777777766666544443
No 193
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=35.18 E-value=1.2e+02 Score=21.56 Aligned_cols=57 Identities=19% Similarity=0.363 Sum_probs=35.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy5037 149 KDCSIKSLEAKLEELSHVTAQLETQVQCC---QEEKYRLGEELAGCQETLDT-MLRQKEEL 205 (224)
Q Consensus 149 ~~~~i~~~e~qL~~l~~~~~~lE~EL~~l---k~er~~l~~dL~~~re~~~k-ld~~~e~l 205 (224)
....|...+..+.+...=+..|+-|++.+ -..|..+..-|..-+..+.+ +...+..+
T Consensus 32 Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 32 RNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666666666666666 13566666666666666666 65555444
No 194
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=34.82 E-value=67 Score=18.96 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 166 VTAQLETQVQCCQEEKYRLGEELAGCQET 194 (224)
Q Consensus 166 ~~~~lE~EL~~lk~er~~l~~dL~~~re~ 194 (224)
++..||+.+..+-.++..+..++..++.+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 45566777777777777777666666554
No 195
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=34.77 E-value=64 Score=19.09 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=12.8
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHHH
Q psy5037 144 ALVQDKDCSIKSLEAKLEELSHVTA 168 (224)
Q Consensus 144 ~~I~e~~~~i~~~e~qL~~l~~~~~ 168 (224)
+++..|...|..++.|-.-|...+.
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544443
No 196
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=34.10 E-value=94 Score=20.01 Aligned_cols=35 Identities=6% Similarity=0.151 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy5037 26 ELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQ 60 (224)
Q Consensus 26 ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ 60 (224)
++++|..+.+.+..++.-+..++..+..+..+...
T Consensus 12 ~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~ 46 (52)
T 1jcd_A 12 DAQTANAKADQASNDANAARSDAQAAKDDAARANQ 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444433333
No 197
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=33.91 E-value=71 Score=21.72 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5037 80 CCEVQRIEEILSKKESERLDLLKHLKF 106 (224)
Q Consensus 80 ~~E~~rlE~~i~~kE~E~~~Lle~~~~ 106 (224)
...|..++..+..++.++..|..++++
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333
No 198
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=33.25 E-value=1.3e+02 Score=22.69 Aligned_cols=52 Identities=8% Similarity=0.160 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy5037 44 LQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKES 95 (224)
Q Consensus 44 lq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~ 95 (224)
+-.-.+++...+..|+.++..--..+.-|+..+.+-..+|.++|=.|+-|=.
T Consensus 20 y~qvsedLrrrIe~LkrKV~~Qvq~i~~Lq~nVrdQvveMkRLEVDIDIKiR 71 (119)
T 1lwu_A 20 YSEVLRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDIDVALR 71 (119)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 3344556677888888888888889999999999999999999988876643
No 199
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=32.97 E-value=1.3e+02 Score=21.43 Aligned_cols=54 Identities=15% Similarity=0.338 Sum_probs=28.4
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 147 QDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLA 210 (224)
Q Consensus 147 ~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~ 210 (224)
.++...+++++..|..|..++.-++.. --.++..-+.....+..+++.+...++
T Consensus 39 ~El~~~l~el~e~l~DL~~SI~i~e~~----------~~~EI~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 39 EEIQDILKDVEETIVDLDRSIIVMKRD----------ENEDVSGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS----------TTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555555555555555554433 334555555555555555555555543
No 200
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=32.34 E-value=1.7e+02 Score=24.14 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=17.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 47 ELYDMNQHNMTIQQELEASRTEAEDVKLQLQ 77 (224)
Q Consensus 47 dL~~~~~e~~~l~~ele~~e~eleeLk~~~~ 77 (224)
-|.++..+|..|+..|+.+..++..|+....
T Consensus 109 AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~ 139 (209)
T 2wvr_A 109 ALYEALKENEKLHKEIEQKDNEIARLKKENK 139 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666666666655554443
No 201
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=31.27 E-value=62 Score=20.86 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 167 TAQLETQVQCCQEEKYRLGEELAGCQE 193 (224)
Q Consensus 167 ~~~lE~EL~~lk~er~~l~~dL~~~re 193 (224)
+..||..+..|..+...|...+..+..
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555554443
No 202
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=30.60 E-value=1.4e+02 Score=20.92 Aligned_cols=44 Identities=9% Similarity=0.136 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy5037 67 TEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQE 110 (224)
Q Consensus 67 ~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~~~l~~e 110 (224)
.-+-+|-.++.....||++|.+.+....-++..|..+-..+-.+
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666666666666666666666655544443333
No 203
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=29.84 E-value=57 Score=29.54 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Q psy5037 74 LQLQHYCCEVQRIEEILSKKESER 97 (224)
Q Consensus 74 ~~~~~~~~E~~rlE~~i~~kE~E~ 97 (224)
.+...+..++..++..+..++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~ 98 (425)
T 2dq3_A 75 NRVKELKEEIDRLEEELRKVEEEL 98 (425)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444443333333
No 204
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=29.46 E-value=93 Score=18.55 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5037 64 ASRTEAEDVKLQLQHYCCEVQRIEEILSK 92 (224)
Q Consensus 64 ~~e~eleeLk~~~~~~~~E~~rlE~~i~~ 92 (224)
.++..+++|-.....+-.||.|+.+.+..
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 34445555555555555666666655543
No 205
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=29.34 E-value=94 Score=18.54 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 63 EASRTEAEDVKLQLQHYCCEVQRIEEILS 91 (224)
Q Consensus 63 e~~e~eleeLk~~~~~~~~E~~rlE~~i~ 91 (224)
..++..+++|.....++..+|.|+.+.+.
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 34555566666666666666666666553
No 206
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=28.95 E-value=1.5e+02 Score=20.70 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5037 27 LNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69 (224)
Q Consensus 27 l~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~el 69 (224)
|.++|..--...+.|..|.++|.....+...+...+...-.++
T Consensus 32 ~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~EL 74 (77)
T 3mtu_E 32 LQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTLLEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4456667777788888888888888877777777776655544
No 207
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=28.83 E-value=11 Score=27.66 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=41.0
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5037 139 VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLE---TQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLA 210 (224)
Q Consensus 139 i~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE---~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~ 210 (224)
+..|..++...+.++.+...+|..|...+.... +.+.-|+..-.--..|..+=|..+.++-+.++.+..+++
T Consensus 19 i~~L~~~L~~AEeaL~~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~EKe~L~~ql~ 93 (96)
T 3fx0_A 19 LEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLE 93 (96)
T ss_dssp -------CCSSTTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 455666666666666666666666666666666 555666666677777777777777777777766666654
No 208
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=28.28 E-value=1.7e+02 Score=21.12 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 156 LEAKLEELSHVTAQLETQVQCCQEEKYR 183 (224)
Q Consensus 156 ~e~qL~~l~~~~~~lE~EL~~lk~er~~ 183 (224)
+++.|+...+--+-||=.|.+..++++.
T Consensus 72 LE~RLsKtEKDkAiLELkLaE~~Dek~r 99 (101)
T 1d7m_A 72 LEARLAKTEKDRAILELKLAEAIDEKSK 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHhhhhhhh
Confidence 4444444444444444445555544443
No 209
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=27.99 E-value=97 Score=18.26 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 167 TAQLETQVQCCQEEKYRLGEELAGCQET 194 (224)
Q Consensus 167 ~~~lE~EL~~lk~er~~l~~dL~~~re~ 194 (224)
+..||+...++-.++..+..++..++.+
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4556666666666666666666555544
No 210
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=27.79 E-value=1.5e+02 Score=20.31 Aligned_cols=57 Identities=21% Similarity=0.180 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 135 SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGC 191 (224)
Q Consensus 135 ~~~ri~~le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~ 191 (224)
+..++.....+|.....-+.++.+.|..-+.--..|+.++.+.+.--..+..+++..
T Consensus 8 L~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d~ 64 (74)
T 2q6q_A 8 LNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSDA 64 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcccc
Confidence 455666777777777777788888877777777778888877777666666555443
No 211
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=27.40 E-value=1.4e+02 Score=21.34 Aligned_cols=55 Identities=11% Similarity=0.211 Sum_probs=28.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 150 DCSIKSLEAKLEELSHVTAQLETQVQCCQ-EEKYRLGEELAGCQETLDTMLRQKEE 204 (224)
Q Consensus 150 ~~~i~~~e~qL~~l~~~~~~lE~EL~~lk-~er~~l~~dL~~~re~~~kld~~~e~ 204 (224)
...|...+..|.+...-+..|+-|++.+- ..|..+..-|..-+..++++...+..
T Consensus 37 k~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 37 KQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKR 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555542 23555566666666666555554444
No 212
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=26.60 E-value=1.1e+02 Score=21.79 Aligned_cols=44 Identities=7% Similarity=0.114 Sum_probs=33.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy5037 51 MNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE 94 (224)
Q Consensus 51 ~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE 94 (224)
+...+..++.++..--..+.-|+..+.+-..+|.++|=.|+-|=
T Consensus 5 LrrrI~~LkrkV~~q~~~i~~Lq~nvr~Q~vemkRLEVDIDIKi 48 (87)
T 1fzc_A 5 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKI 48 (87)
T ss_dssp ----CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 44566677778888888888899999999999999998887653
No 213
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=26.54 E-value=1.5e+02 Score=20.90 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy5037 31 ELERNRAQSEVRRLQTELYDMNQHNMTIQQELEA 64 (224)
Q Consensus 31 r~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~ 64 (224)
+....++..||..|...++....++..++.+...
T Consensus 30 r~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~ 63 (83)
T 1wlq_A 30 RKALYEALKENEKLHKEIEQKDSEIARLRKENKD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788889999888888877766666555443
No 214
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=25.73 E-value=1.1e+02 Score=17.96 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 169 QLETQVQCCQEEKYRLGEELAGC 191 (224)
Q Consensus 169 ~lE~EL~~lk~er~~l~~dL~~~ 191 (224)
.||+.+.++-.++..+..++..+
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444444444444444433333
No 215
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=24.98 E-value=1.4e+02 Score=18.92 Aligned_cols=37 Identities=8% Similarity=0.274 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy5037 39 SEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQ 75 (224)
Q Consensus 39 ~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~ 75 (224)
++|..|..-..++...+..+++.|.-++..+..|+..
T Consensus 17 kenaklenivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 3555666666666666666666666666666666543
No 216
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=24.72 E-value=2.7e+02 Score=22.20 Aligned_cols=54 Identities=9% Similarity=0.282 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 153 IKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELR 206 (224)
Q Consensus 153 i~~~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~ 206 (224)
.+-+.+-|.+++.+-..|+..|+......-.+...+.+++-....|...++..-
T Consensus 98 ~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl 151 (170)
T 3l4q_C 98 SERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYL 151 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 334444445555555555555555444444444444444444444444444333
No 217
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=24.07 E-value=1e+02 Score=17.58 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q psy5037 75 QLQHYCCEVQRIEE 88 (224)
Q Consensus 75 ~~~~~~~E~~rlE~ 88 (224)
-++.+...++++++
T Consensus 14 ivq~lq~r~drle~ 27 (32)
T 2akf_A 14 IVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333444433
No 218
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=23.84 E-value=2.7e+02 Score=21.90 Aligned_cols=81 Identities=14% Similarity=0.111 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH------------HHHHHHHHHHHH
Q psy5037 44 LQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLD------------LLKHLKFISQET 111 (224)
Q Consensus 44 lq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~------------Lle~~~~l~~e~ 111 (224)
++..+..+...-..|..-.......++ .++.+..++..+..=|..++..... |...|..+..++
T Consensus 79 i~~rl~~l~~~~~~L~~~a~~R~~~L~----~L~~f~~~~~~~~~Wl~eke~~~~s~d~g~~~~~v~~l~~k~~~f~~el 154 (210)
T 3pdy_A 79 YRDCLGRLDLQYAKLLNSSKARLRSLE----SLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMREL 154 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHSCCSTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHccccCCCchhHHHHHHHHHHHHHHH
Confidence 344444444444444444433333333 6788888888888888888887765 778888888888
Q ss_pred HHHHhhhhhhhhhhhhh
Q psy5037 112 AELENNNHSLDGEMKSC 128 (224)
Q Consensus 112 ~~lE~r~~~lE~e~nel 128 (224)
...+.++.++......+
T Consensus 155 ~~~~~~v~~l~~~~~~L 171 (210)
T 3pdy_A 155 ELKEKKIKELQNAGDRL 171 (210)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 87777777776665554
No 219
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=23.44 E-value=1.7e+02 Score=19.47 Aligned_cols=46 Identities=22% Similarity=0.285 Sum_probs=37.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q psy5037 84 QRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCK 129 (224)
Q Consensus 84 ~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~ 129 (224)
=.+...+..-|+.+..|+.=-..++.|++.+-..++.+.++.+.++
T Consensus 16 levK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 16 LELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 3456677788888888888888888999999999998888877665
No 220
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=23.31 E-value=1.6e+02 Score=24.17 Aligned_cols=44 Identities=25% Similarity=0.240 Sum_probs=27.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy5037 84 QRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKS 127 (224)
Q Consensus 84 ~rlE~~i~~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~ne 127 (224)
+.++...-..-++-.+|+.....++.+.+.|..++..++|..++
T Consensus 33 ~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se 76 (206)
T 3oa7_A 33 QQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSE 76 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHh
Confidence 33444444455555666666666777777777777777777655
No 221
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=23.31 E-value=1.6e+02 Score=19.92 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5037 61 ELEASRTEAEDVKLQLQ 77 (224)
Q Consensus 61 ele~~e~eleeLk~~~~ 77 (224)
.+.....++..|+.+++
T Consensus 33 ~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 33 RLSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 222
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=22.58 E-value=4e+02 Score=23.55 Aligned_cols=60 Identities=12% Similarity=0.237 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhh
Q psy5037 160 LEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKE 219 (224)
Q Consensus 160 L~~l~~~~~~lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~~~~~~~~l 219 (224)
+..+...-..|...|..+++-+..|..+|..-...+-.+++.++.+.-.|..+.-.++++
T Consensus 200 ~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~ 259 (373)
T 3hhm_B 200 IQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQY 259 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 334444455555555566666666666666666666666666666665555554444443
No 223
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=22.56 E-value=1.9e+02 Score=19.84 Aligned_cols=47 Identities=17% Similarity=0.338 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5037 22 RFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTE 68 (224)
Q Consensus 22 ~lr~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~e 68 (224)
++-++|+-+..++.-+..||+-+-..++.+..-.+.+=..|...+..
T Consensus 4 ~~~~~Leml~IrKnma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqd 50 (72)
T 2xu6_A 4 TLVNSLEFLNIQKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQN 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555666666666666666555555555544444444444333333
No 224
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=21.80 E-value=1.6e+02 Score=18.66 Aligned_cols=38 Identities=26% Similarity=0.156 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5037 65 SRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLK 102 (224)
Q Consensus 65 ~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle 102 (224)
++..+..|+.--..++..|..++...+.+++|+.-|..
T Consensus 2 aeq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 2 SERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 35567778888888888888888888888888876544
No 225
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=21.70 E-value=3.3e+02 Score=22.21 Aligned_cols=72 Identities=18% Similarity=0.165 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy5037 27 LNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHL 104 (224)
Q Consensus 27 l~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~~i~~kE~E~~~Lle~~ 104 (224)
+|-+-.....+..+|..|+............+...++..-....+++..+ +.++-..++.|-..|+++..++
T Consensus 127 fd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L------~~KF~~lLNeKK~KIR~lq~~L 198 (213)
T 1ik9_A 127 IAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDL------YKRFILVLNEKKTKIRSLHNKL 198 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHHHHHHHHHHH
Confidence 44444444555666666666666666666666667777777777766665 5677777888877777755433
No 226
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.51 E-value=1.6e+02 Score=18.65 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 156 LEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA 189 (224)
Q Consensus 156 ~e~qL~~l~~~~~~lE~EL~~lk~er~~l~~dL~ 189 (224)
.+.....|.+.+-.||++|-.-+.....+..++.
T Consensus 10 AERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD 43 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDELYAQKLKYKAISEELD 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455556666666666666665555555544443
No 227
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=21.35 E-value=5e+02 Score=24.17 Aligned_cols=39 Identities=10% Similarity=0.138 Sum_probs=18.5
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 142 LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEE 180 (224)
Q Consensus 142 le~~I~e~~~~i~~~e~qL~~l~~~~~~lE~EL~~lk~e 180 (224)
-+..+..+...+..|..++++-....+.-+.++...+..
T Consensus 64 Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~ 102 (497)
T 3iox_A 64 YEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAA 102 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555555555444443
No 228
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=21.00 E-value=1.8e+02 Score=18.98 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5037 170 LETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLAD 211 (224)
Q Consensus 170 lE~EL~~lk~er~~l~~dL~~~re~~~kld~~~e~l~~qL~~ 211 (224)
.+..+..|+.-...|.+.+..+..-|.+.+..+++|+.-|-.
T Consensus 9 se~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 9 SERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888889999999999999999999999877654
No 229
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=20.63 E-value=1.7e+02 Score=20.00 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 44 LQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEE 88 (224)
Q Consensus 44 lq~dL~~~~~e~~~l~~ele~~e~eleeLk~~~~~~~~E~~rlE~ 88 (224)
|...|......+.-+..-+.+++.-..-|-.+..-+..||.|+|.
T Consensus 20 l~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 20 LVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLER 64 (71)
T ss_dssp ---------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555556666666666666666666666666666653
No 230
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=20.58 E-value=3.2e+02 Score=21.91 Aligned_cols=44 Identities=11% Similarity=0.159 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5037 25 YELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTE 68 (224)
Q Consensus 25 ~ql~~lr~~r~~a~~E~~rlq~dL~~~~~e~~~l~~ele~~e~e 68 (224)
.=++-+-+....+.++|.+|+++|.....+...+..+++..-.+
T Consensus 128 eli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~e 171 (175)
T 3mud_A 128 ELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLE 171 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666666666666666666665555544433
No 231
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=20.42 E-value=1.3e+02 Score=17.07 Aligned_cols=29 Identities=34% Similarity=0.483 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5037 167 TAQLETQVQCCQEEKYRLGEELAGCQETL 195 (224)
Q Consensus 167 ~~~lE~EL~~lk~er~~l~~dL~~~re~~ 195 (224)
++.|+.++.+...+.-.+..++..+...|
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 45566666666666666666666665555
No 232
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=20.27 E-value=2e+02 Score=19.16 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHhHHhhH
Q psy5037 92 KKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSI 153 (224)
Q Consensus 92 ~kE~E~~~Lle~~~~l~~e~~~lE~r~~~lE~e~nel~le~~~~~~ri~~le~~I~e~~~~i 153 (224)
..+..+.+.+..+..+-..+...=+.+.+..-++....+..-.++|++.+++.-|.......
T Consensus 8 ~~e~kI~~~~~~~~~~l~~~~~~~~~l~~~~~el~~~~i~~lE~~N~~~s~~~li~~~~~r~ 69 (73)
T 3htk_B 8 DIDDQIQQLLLKQRHLLSKMASSMKSLKNCQKELISTQILQFEAQNMDVSMNDVIGFFNERE 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHhHHHHHHHHHHHHH
Confidence 33444444444444444444444455555566666666666777888888777776665543
Done!