RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5037
(224 letters)
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 53.5 bits (129), Expect = 2e-08
Identities = 51/228 (22%), Positives = 105/228 (46%), Gaps = 14/228 (6%)
Query: 6 NKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTEL--------------YDM 51
+ E E L ++ + EL L+ E A+ E+ L EL ++
Sbjct: 220 AELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL 279
Query: 52 NQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQET 111
+ +Q+EL A E ++ Q Q + +E L + E++ +L L +++E
Sbjct: 280 EEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL 339
Query: 112 AELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLE 171
AELE L E++S + L E E ++ +LE+ +++ + +++L +K+ +L A L
Sbjct: 340 AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLN 399
Query: 172 TQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKE 219
+++ + RL + Q+ ++ +L++ EE L+ E + +E
Sbjct: 400 NEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447
Score = 48.5 bits (116), Expect = 1e-06
Identities = 40/215 (18%), Positives = 96/215 (44%)
Query: 10 EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69
RE + +I+ + ++ LE + E+ L+ EL + + + +++ A R +
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735
Query: 70 EDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCK 129
++ +++ + ++ + L++ E+E +L + L+ +E AE E L+ +++ K
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
Query: 130 NLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA 189
L + + +L A + + +L +LE L A E +++ +E+ L E++
Sbjct: 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855
Query: 190 GCQETLDTMLRQKEELRLQLADTENYKTKESAPMA 224
++ + EEL +L N + +A
Sbjct: 856 SLAAEIEELEELIEELESELEALLNERASLEEALA 890
Score = 42.4 bits (100), Expect = 1e-04
Identities = 42/211 (19%), Positives = 85/211 (40%), Gaps = 14/211 (6%)
Query: 7 KRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASR 66
R E E + I + EL LE E + + + EL + ++ ++E +
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
Query: 67 TEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLL-------KHLKFISQETAELENNNH 119
E + ++ L E+ + E + L + L+ + ++ EL +
Sbjct: 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855
Query: 120 SLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179
SL E++ + L+ E E ++ L + ++ L ++LEELS +LE++
Sbjct: 856 SLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS---- 911
Query: 180 EKYRLGEELAGCQETLDTMLRQKEELRLQLA 210
L EL +E L + + E L +++
Sbjct: 912 ---ELRRELEELREKLAQLELRLEGLEVRID 939
Score = 36.6 bits (85), Expect = 0.008
Identities = 37/181 (20%), Positives = 77/181 (42%), Gaps = 8/181 (4%)
Query: 9 SEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTE 68
E + +++ + ++ LEL+ +E+ RL+ L + +QQE+E +
Sbjct: 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429
Query: 69 AEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSC 128
E+ +L+ E++ +EE L + + E L + L+ + +E E E + + E+
Sbjct: 430 LEEAELKELQA--ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
Query: 129 KNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEEL 188
+ L E +L+ ++ +K+L LS + L + +E Y E
Sbjct: 488 QARLDSLE----RLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV--DEGYEAAIEA 541
Query: 189 A 189
A
Sbjct: 542 A 542
Score = 36.2 bits (84), Expect = 0.013
Identities = 48/230 (20%), Positives = 101/230 (43%), Gaps = 26/230 (11%)
Query: 7 KRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASR 66
+ E + +++ + E++ LE E Q E+ L E+ + Q +++ L
Sbjct: 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315
Query: 67 TEAEDVKLQLQH-------YCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNH 119
+ E+++ QL+ E+ +EE L + + E L L+ + E ELE+
Sbjct: 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375
Query: 120 SLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSL-------------------EAKL 160
L+ ++++ ++ +A+ E ++ L ++ + ++ L EA+L
Sbjct: 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL 435
Query: 161 EELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLA 210
+EL +LE +++ QEE RL E L +E L+ + + +LA
Sbjct: 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
Score = 31.6 bits (72), Expect = 0.32
Identities = 37/198 (18%), Positives = 77/198 (38%), Gaps = 22/198 (11%)
Query: 7 KRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQ------ 60
++ + E K +D + EL L E + + L+ + + +++
Sbjct: 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS 851
Query: 61 --------ELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETA 112
E+E E+++ +L+ E +EE L+ SE +L S+E
Sbjct: 852 EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL-------SEELR 904
Query: 113 ELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSL-EAKLEELSHVTAQLE 171
ELE+ L E++ + LA+ E ++ LE + + + LEE + ++E
Sbjct: 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIE 964
Query: 172 TQVQCCQEEKYRLGEELA 189
+ + RL ++
Sbjct: 965 DDEEEARRRLKRLENKIK 982
Score = 31.6 bits (72), Expect = 0.34
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 2 TLNLNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQE 61
+ + E +L +E++ E +LE +SE+ L EL ++ +++E
Sbjct: 858 AAEIEELEELIEEL-ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRE 916
Query: 62 LEASRTEAEDVKLQLQHYCCEVQRIEEILS 91
LE R + ++L+L+ + ++E LS
Sbjct: 917 LEELREKLAQLELRLEGLEVRIDNLQERLS 946
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 50.5 bits (121), Expect = 2e-07
Identities = 50/210 (23%), Positives = 105/210 (50%)
Query: 10 EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69
ER+ + E+ + EL L+ + E+ L+ EL ++ + +++ELE+
Sbjct: 715 ERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774
Query: 70 EDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCK 129
+K +++ + Q ++E L + E E + + L + +E LE L+ E++ +
Sbjct: 775 AKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834
Query: 130 NLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA 189
+ E E+K+ +LE +++ + ++ L+ +LEEL +LE +++ +EEK L EEL
Sbjct: 835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELR 894
Query: 190 GCQETLDTMLRQKEELRLQLADTENYKTKE 219
+ L + + E+LR +L + E +
Sbjct: 895 ELESELAELKEEIEKLRERLEELEAKLERL 924
Score = 48.2 bits (115), Expect = 1e-06
Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 3/205 (1%)
Query: 10 EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69
E +A+L E+ +L L E + E+ RL+ EL ++ + ++E+E ++E
Sbjct: 217 ELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSEL 276
Query: 70 EDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCK 129
E+++ +L+ E+ ++E + + E E L + L+ + E ELE L ++++ K
Sbjct: 277 EELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALK 336
Query: 130 NLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA 189
L E E + +LE L+ + + + + LE KL L +LE + +EE L ELA
Sbjct: 337 EELEERETLLEELEQLLAELEEAKEELEEKLSALL---EELEELFEALREELAELEAELA 393
Query: 190 GCQETLDTMLRQKEELRLQLADTEN 214
+ L+ + R+ E L +L
Sbjct: 394 EIRNELEELKREIESLEERLERLSE 418
Score = 47.4 bits (113), Expect = 3e-06
Identities = 47/209 (22%), Positives = 102/209 (48%), Gaps = 7/209 (3%)
Query: 8 RSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRT 67
R++R + E+ + EL LE + + + E++ L+ EL + ++++LE
Sbjct: 657 RNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716
Query: 68 EAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKS 127
+ E++K +L E+++++ L + E E +L + L+ + + ELE SL+ +
Sbjct: 717 QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAK 776
Query: 128 CKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEE 187
K + E E+K L+ ++ LE +LEE LE +++ ++ + RL +E
Sbjct: 777 LKEEIEELEEKRQALQE-------ELEELEEELEEAERRLDALERELESLEQRRERLEQE 829
Query: 188 LAGCQETLDTMLRQKEELRLQLADTENYK 216
+ +E ++ + + +EL +L + E
Sbjct: 830 IEELEEEIEELEEKLDELEEELEELEKEL 858
Score = 46.6 bits (111), Expect = 5e-06
Identities = 43/214 (20%), Positives = 96/214 (44%), Gaps = 7/214 (3%)
Query: 7 KRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASR 66
++ + + E++ + EL L+ + E+ L+ L + + ++++ +A +
Sbjct: 733 EQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQ 792
Query: 67 TEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELEN-------NNH 119
E E+++ +L+ + +E L E R L + ++ + +E ELE
Sbjct: 793 EELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELE 852
Query: 120 SLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179
L+ E++ K L E E + +LE +++ + + LE +L EL A+L+ +++ +E
Sbjct: 853 ELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRE 912
Query: 180 EKYRLGEELAGCQETLDTMLRQKEELRLQLADTE 213
L +L + L + + EE +TE
Sbjct: 913 RLEELEAKLERLEVELPELEEELEEEYEDTLETE 946
Score = 46.2 bits (110), Expect = 6e-06
Identities = 52/205 (25%), Positives = 107/205 (52%)
Query: 10 EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69
E + + E+ K EL +LE + ++ L+ +L ++ + +++ELE ++
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739
Query: 70 EDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCK 129
E+++ +L+ E++ ++E L + E E L + L + +E ELE +L E++ +
Sbjct: 740 EELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELE 799
Query: 130 NLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA 189
L E+E+++ LE ++ + + LE ++EEL +LE ++ +EE L +EL
Sbjct: 800 EELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELE 859
Query: 190 GCQETLDTMLRQKEELRLQLADTEN 214
+E L+ + +KEEL +L + E
Sbjct: 860 ELKEELEELEAEKEELEDELKELEE 884
Score = 42.4 bits (100), Expect = 1e-04
Identities = 48/211 (22%), Positives = 97/211 (45%), Gaps = 4/211 (1%)
Query: 10 EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69
E E L ++ + EL LE + ++ L+ EL + ++Q L
Sbjct: 301 EGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAK 360
Query: 70 EDVKLQLQHYCCEV----QRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEM 125
E+++ +L E+ + + E L++ E+E ++ L+ + +E LE L +
Sbjct: 361 EELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERL 420
Query: 126 KSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLG 185
+ K L E E ++ +L+ +++ + ++ LE +LEEL +LE ++ QEE RL
Sbjct: 421 EDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLE 480
Query: 186 EELAGCQETLDTMLRQKEELRLQLADTENYK 216
+EL+ + LD + ++ + A E +
Sbjct: 481 KELSSLEARLDRLEAEQRASQGVRAVLEALE 511
Score = 41.6 bits (98), Expect = 2e-04
Identities = 32/180 (17%), Positives = 89/180 (49%)
Query: 35 NRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE 94
+R + + EL ++ + ++ +LE E + +K +L+ ++ + L + E
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715
Query: 95 SERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIK 154
+ +L + L + +E +L++ L+ E++ + L E ++++ +LE ++ + ++
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775
Query: 155 SLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTEN 214
L+ ++EEL L+ +++ +EE L + L+++ +++E L ++ + E
Sbjct: 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835
Score = 39.3 bits (92), Expect = 0.001
Identities = 51/209 (24%), Positives = 99/209 (47%), Gaps = 23/209 (11%)
Query: 7 KRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASR 66
+ E E + A +D + EL +LE R R + E+ L+ E+ ++ + +++ELE
Sbjct: 796 EELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELE 855
Query: 67 TEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMK 126
E E++K +L+ E + +E+ L + E E+ ELE L+ E+
Sbjct: 856 KELEELKEELEELEAEKEELEDELKELEEEK--------------EELEEELRELESELA 901
Query: 127 SCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEEL--SHVTAQLETQVQCCQEEKYRL 184
K + + +++ +LEA ++ + + LE +LEE + +LE +++ +EE L
Sbjct: 902 ELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEAL 961
Query: 185 G-------EELAGCQETLDTMLRQKEELR 206
G EE +E + + Q+E+L
Sbjct: 962 GPVNLRAIEEYEEVEERYEELKSQREDLE 990
Score = 32.4 bits (74), Expect = 0.18
Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 14/175 (8%)
Query: 5 LNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEA 64
L + E + E+ + EL + E + E+ L+ L +++ +++EL+
Sbjct: 370 LLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKE 429
Query: 65 SRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGE 124
E E+++ +L+ + E L + E + +L LK + +E AEL+ L+ E
Sbjct: 430 LEAELEELQTELE-------ELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKE 482
Query: 125 MKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179
+ S E ++ +LEA + LEA L V + ++ ++
Sbjct: 483 LSSL-------EARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEK 530
Score = 27.8 bits (62), Expect = 6.8
Identities = 28/131 (21%), Positives = 59/131 (45%)
Query: 85 RIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEA 144
+EE+ + E K ++ + E L ++K + L E E+++ +LE
Sbjct: 194 LLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEE 253
Query: 145 LVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEE 204
+++ ++ E ++EEL +L +++ QEE L EE+ + + + + EE
Sbjct: 254 ELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEE 313
Query: 205 LRLQLADTENY 215
L +L + E
Sbjct: 314 LENELEELEER 324
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 44.7 bits (106), Expect = 2e-05
Identities = 54/215 (25%), Positives = 104/215 (48%), Gaps = 11/215 (5%)
Query: 5 LNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEA 64
L RSE E+ R + L L+ E + QSE+RR++ L +++Q +++
Sbjct: 667 LFSRSEPA------ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE 720
Query: 65 SRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGE 124
E E ++ + + ++ +EE LS E E ++ LK + ELE + H L+
Sbjct: 721 IEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA 780
Query: 125 MKSCKNLLAES-----EKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQE 179
+ + L+ S + ++ KLE V + ++ +E KL L+ LE ++Q QE
Sbjct: 781 LNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE 840
Query: 180 EKYRLGEELAGCQETLDTMLRQKEELRLQLADTEN 214
++ L E++ ++ ++ + +KEEL +L + E
Sbjct: 841 QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEA 875
Score = 43.1 bits (102), Expect = 7e-05
Identities = 38/212 (17%), Positives = 97/212 (45%), Gaps = 12/212 (5%)
Query: 8 RSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRT 67
R E + E+ ++ +E E + + E +L+ L ++ + +++QE+E ++
Sbjct: 699 RIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS 758
Query: 68 EAEDVKLQLQHYCCEVQRIEEILSKKESERLD-----LLKHLKFISQETAELENNNHSLD 122
E ++++ +++ ++ ++EE L+ E+ + L + +E + +E ++
Sbjct: 759 ELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIE 818
Query: 123 GEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKY 182
++ EK++ +L+ D IKS+E ++E L+ +LE +++ +
Sbjct: 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR 878
Query: 183 RLGEELAGCQETLDTMLRQKEELRLQLADTEN 214
L L + ++++EL QL + E
Sbjct: 879 DLESRLGDLK-------KERDELEAQLRELER 903
Score = 42.7 bits (101), Expect = 9e-05
Identities = 35/209 (16%), Positives = 88/209 (42%)
Query: 5 LNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEA 64
L + +++ L E R K ++ LE E + + + EL D + ++ E++
Sbjct: 274 LEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDK 333
Query: 65 SRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGE 124
E E+++ +++ ++ E ++ + E DL L+ + +E AE + +
Sbjct: 334 LLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
Query: 125 MKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRL 184
++ K + E ++++ +L+ +Q + L A + + +LE + + E +
Sbjct: 394 LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ 453
Query: 185 GEELAGCQETLDTMLRQKEELRLQLADTE 213
+L L ++ +L+ + E
Sbjct: 454 EWKLEQLAADLSKYEQELYDLKEEYDRVE 482
Score = 42.4 bits (100), Expect = 1e-04
Identities = 45/199 (22%), Positives = 85/199 (42%)
Query: 8 RSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRT 67
ER E++ + L LE E ++ +E+ L+ E+ + + + +E +
Sbjct: 305 SLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE 364
Query: 68 EAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKS 127
E ED++ +L+ E + L + L + + + +E L+ L E+
Sbjct: 365 ELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAD 424
Query: 128 CKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEE 187
+A E K+ +LE +DK IK E KLE+L+ ++ E ++ +EE R+ +E
Sbjct: 425 LNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE 484
Query: 188 LAGCQETLDTMLRQKEELR 206
L+ Q L Q
Sbjct: 485 LSKLQRELAEAEAQARASE 503
Score = 35.8 bits (83), Expect = 0.014
Identities = 41/201 (20%), Positives = 88/201 (43%), Gaps = 14/201 (6%)
Query: 26 ELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQR 85
+LN L LE+ + E++ LQ + D+ + +I++E+E + E+++ +L+ ++
Sbjct: 820 KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD 879
Query: 86 IEEILSKKESERLDLLKHLKFISQETAELE---NNNHSLDGEMKSCKNLLAESEKKVMKL 142
+E L + ER +L L+ + ++ ELE E+K+ L E ++
Sbjct: 880 LESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDP 939
Query: 143 EALVQDKDCSIKSLEAKLEELSHVTAQLET-------QVQCCQEEKYRLGEELAGCQETL 195
+ ++ SLE EL V ++ +Q +E RL E +E
Sbjct: 940 KGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDE----LKEKR 995
Query: 196 DTMLRQKEELRLQLADTENYK 216
+ +++ + ++ + E K
Sbjct: 996 AKLEEERKAILERIEEYEKKK 1016
Score = 34.7 bits (80), Expect = 0.038
Identities = 38/220 (17%), Positives = 90/220 (40%), Gaps = 8/220 (3%)
Query: 7 KRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASR 66
++ E E E + + + +E + + E+ +L E+ ++ + I+Q LE
Sbjct: 219 EKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELN 278
Query: 67 TEAED--------VKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNN 118
+ +D VK ++ E+ +E +++KE E D + L + E +L
Sbjct: 279 KKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
Query: 119 HSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ 178
L+ E++ + + ++ +L+ ++D ++ ++ + E +++ +
Sbjct: 339 EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398
Query: 179 EEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTK 218
E L EL QE L + + +L +A E +
Sbjct: 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE 438
Score = 33.9 bits (78), Expect = 0.071
Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 5/204 (2%)
Query: 7 KRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNM-----TIQQE 61
+ E + EI+ K EL LE + ++ +L+ L D+ IQ E
Sbjct: 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAE 799
Query: 62 LEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSL 121
L E ++ +L+ ++ R+ E E +L + + ++ +E +L
Sbjct: 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL 859
Query: 122 DGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEK 181
+G+ + + L E E + LE+ + D LEA+L EL +LE Q++ ++
Sbjct: 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919
Query: 182 YRLGEELAGCQETLDTMLRQKEEL 205
L +L +E L + K E
Sbjct: 920 SELKAKLEALEEELSEIEDPKGED 943
Score = 27.7 bits (62), Expect = 6.5
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 21/126 (16%)
Query: 6 NKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEAS 65
+ E K ++++ K E+N L+ E +R Q E++RL EL D+N I+ ++
Sbjct: 380 FAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINEL 439
Query: 66 RTEAEDV-------------------KLQLQHYCC--EVQRIEEILSKKESERLDLLKHL 104
E ED K + + Y E R+E+ LSK + E +
Sbjct: 440 EEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499
Query: 105 KFISQE 110
+ +
Sbjct: 500 RASEER 505
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 38.1 bits (88), Expect = 0.003
Identities = 40/208 (19%), Positives = 82/208 (39%), Gaps = 16/208 (7%)
Query: 8 RSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRT 67
+EREA A +E+ + + E + E A+ + + Q EL + + +Q L+
Sbjct: 101 ETEREA--ARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAE 158
Query: 68 EAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKS 127
+ ++ Q Q ++++ ++ +S+ LDL I QE L
Sbjct: 159 QRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATR---------- 208
Query: 128 CKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEE 187
N +++ + A Q +I+ +A++ + + A Q++ + + RL
Sbjct: 209 -ANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETA 267
Query: 188 LAGCQ---ETLDTMLRQKEELRLQLADT 212
A + L+ + LR Q A T
Sbjct: 268 QARLEQEVAQLEAYYQAYVRLRQQAAAT 295
Score = 32.3 bits (73), Expect = 0.20
Identities = 34/190 (17%), Positives = 73/190 (38%), Gaps = 11/190 (5%)
Query: 25 YELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQ 84
++L+++ + ++E+ Q E + EL+ +R E E V+ +L +
Sbjct: 74 FQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLA 133
Query: 85 RIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEA 144
+ ++ L++ + DL LK ++++ +LE SL K + + + +V+ L
Sbjct: 134 KAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDL-- 191
Query: 145 LVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEE 204
K A++E+ + A Q EE R + + Q +
Sbjct: 192 ---------KLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQ 242
Query: 205 LRLQLADTEN 214
Q+A
Sbjct: 243 KAQQIAARAE 252
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 36.2 bits (84), Expect = 0.010
Identities = 34/237 (14%), Positives = 78/237 (32%), Gaps = 24/237 (10%)
Query: 7 KRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASR 66
E++ + + + + +L +LE E ++++ +L + + + L A
Sbjct: 48 AALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107
Query: 67 TEAEDVKLQLQHYCCEVQR------IEEILSKKES---------------ERLDLLKHLK 105
+ + + +L +QR ++S +++ R + + LK
Sbjct: 108 VQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALK 167
Query: 106 FISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSH 165
+L + E LL+E + KL L++++ ++ L ++L
Sbjct: 168 ---ATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQK 224
Query: 166 VTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKESAP 222
+L + E A +E R A K +AP
Sbjct: 225 KLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKPTAP 281
Score = 31.6 bits (72), Expect = 0.28
Identities = 34/186 (18%), Positives = 77/186 (41%), Gaps = 29/186 (15%)
Query: 50 DMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQ 109
++ IQ+E+ A + + + Q +++ +E ++ E++ ++ LK + +
Sbjct: 35 ADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK 94
Query: 110 ETAELENNNHSLDGEMKSCKNLLAE-------------------------SEKKVMKLEA 144
+ A+L ++L+ + + + LAE S + + A
Sbjct: 95 QIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGA 154
Query: 145 LVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEE 204
L + I +L+A L++L+ V A++ + Q E L E Q L +L ++++
Sbjct: 155 LNPARAERIDALKATLKQLAAVRAEIAAE----QAELTTLLSEQRAQQAKLAQLLEERKK 210
Query: 205 LRLQLA 210
QL
Sbjct: 211 TLAQLN 216
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 31.9 bits (73), Expect = 0.24
Identities = 38/209 (18%), Positives = 82/209 (39%), Gaps = 22/209 (10%)
Query: 15 LATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKL 74
L + + + LE + R ++EV RL+ E +Q + +L ++ A +
Sbjct: 71 LVELDATDVEADAAELESQVLRLEAEVARLRAEA--DSQAAIEFPDDLLSAEDPAVPELI 128
Query: 75 QLQH---------YCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEM 125
+ Q +++ I + + E+E L + L + E+
Sbjct: 129 KGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQ-------AQLQALRQQLEVISEEL 181
Query: 126 KSCKNLLAE---SEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKY 182
++ + L + S ++++LE + + LEA+LE L +L+ + Q ++
Sbjct: 182 EARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFR 241
Query: 183 R-LGEELAGCQETLDTMLRQKEELRLQLA 210
+ EEL Q L + + + R +L
Sbjct: 242 EEVLEELTEAQARLAELRERLNKARDRLQ 270
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 31.4 bits (72), Expect = 0.33
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 88 EILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMK--SCKNLLAESEKKVMKLEAL 145
E L K S L + L + N ++ S + L+ + E+++ K+E
Sbjct: 43 ERLRKLRSLLTKLSEALDKLRSY-LPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKE 101
Query: 146 VQDKDCSIKSLEAKLEELSHVTAQLE 171
+++ + I LE +++EL +LE
Sbjct: 102 IKELEEEISELENEIKELEQEIERLE 127
Score = 30.3 bits (69), Expect = 0.82
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Query: 19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQH 78
I+ K EL+N L ++R L T+L ++ ++ L E+ K
Sbjct: 32 HIEDLKEELSNERLR------KLRSLLTKL---SEALDKLRSYLPKLNPLREEKKKV--- 79
Query: 79 YCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNL 131
V+ +EE++ E E + K +K + +E +ELEN L+ E++ +
Sbjct: 80 ---SVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPW 129
Score = 28.4 bits (64), Expect = 3.6
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 82 EVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMK 141
++ I+E L + E ER LL+ LK ++++ E + L E E+
Sbjct: 216 LIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEY---------LEIELERAEAL 266
Query: 142 LEALVQDK 149
+ L DK
Sbjct: 267 SKFLKTDK 274
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 30.8 bits (70), Expect = 0.52
Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 8/124 (6%)
Query: 86 IEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEAL 145
+ E LSK + E K E + +K + + E++ +L+
Sbjct: 390 LAEALSKVKEEERPREKE-----GTEEEERREITVYEKRIKKLEETVERLEEENSELKRE 444
Query: 146 VQDKDCSIKSLEAKLEELS---HVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQK 202
+++ I+ LE++LE + + +++ RL +EL ++ ++ + R+
Sbjct: 445 LEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKL 504
Query: 203 EELR 206
ELR
Sbjct: 505 AELR 508
Score = 28.9 bits (65), Expect = 2.5
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 7 KRSEREAKLATTEIDRFKYELNNLELERNRAQSEVR---RLQTELYDMNQHNMTIQQELE 63
+R E E E++ K E+ LE E R + EVR R E+ ++ +++ELE
Sbjct: 432 ERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELE 491
Query: 64 ASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAEL 114
+ E+++ +++ E+ ++ E +K + + T E
Sbjct: 492 EKKKRVEELE----------RKLAELRKMRKLELSGKGTPVKVVEKLTLEA 532
>gnl|CDD|227605 COG5280, COG5280, Phage-related minor tail protein [Function
unknown].
Length = 634
Score = 30.6 bits (69), Expect = 0.64
Identities = 12/51 (23%), Positives = 15/51 (29%)
Query: 2 TLNLNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMN 52
+ E +L T EI + L E N VR L D
Sbjct: 87 QFGSGEIGEEAERLFTREIRVTEGGLTGSLSELNEPTVSVREHGKGLKDEE 137
>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like
protein; Provisional.
Length = 398
Score = 30.5 bits (69), Expect = 0.72
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 7 KRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQT 46
K E+E + + + K E NL+ E RA+ EV+R+Q+
Sbjct: 25 KELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 30.5 bits (69), Expect = 0.79
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 20/114 (17%)
Query: 61 ELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHS 120
E+E R EAE + + +R + I K +++ L S E+ L+ N
Sbjct: 506 EIERMRQEAEKYAEEDR------RRKQLIELKNQADSL-------LYSYEST-LKENGEL 551
Query: 121 LDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQV 174
+ E+K +E+KV +LEA + D + S++ L+ +LEE + +V
Sbjct: 552 ISEELKQ------RAEQKVEQLEAALTDPNISLEELKQQLEEFQQALLAIGAEV 599
>gnl|CDD|222790 PHA00430, PHA00430, tail fiber protein.
Length = 568
Score = 30.2 bits (68), Expect = 0.95
Identities = 12/69 (17%), Positives = 22/69 (31%)
Query: 7 KRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASR 66
R + A T+ ++ K + + E N A + + + A+
Sbjct: 211 NRFKGYADSMTSSVEAAKGQAESSSKEANTAGDYATKAAASASAAHASEVNAANSATAAA 270
Query: 67 TEAEDVKLQ 75
T A K Q
Sbjct: 271 TSANRAKQQ 279
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated.
Length = 343
Score = 29.9 bits (68), Expect = 1.0
Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 7/129 (5%)
Query: 90 LSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEAL---- 145
+S K+S L + ++ + N L + + + L+ +E + +L+AL
Sbjct: 48 ISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAEL 107
Query: 146 ---VQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQK 202
+ L +L+ V+A+ QV+ ++ L +LA + LD ++
Sbjct: 108 AGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167
Query: 203 EELRLQLAD 211
E + ++AD
Sbjct: 168 RESQAKIAD 176
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 30.0 bits (68), Expect = 1.0
Identities = 47/231 (20%), Positives = 89/231 (38%), Gaps = 33/231 (14%)
Query: 3 LNLNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQEL 62
+L K+ E E ++ + +L +E R ++++R L + + +
Sbjct: 247 ESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTK 306
Query: 63 EASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLL-------KHLKFISQETAELE 115
+ E + + QL +E L +++ E L+ L +H+K I+ E AE++
Sbjct: 307 AQLQKEEQSQQNQL---------TQEELEERDKELLESLPKLALPAEHVKEIAAELAEID 357
Query: 116 NNN-------HSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTA 168
H L G + +L + K+ L K +K L EEL+ V
Sbjct: 358 KPATTDSEIPHRLSGSELTQLEVLIQQVKR-----ELQDAKSQLLKELRELEEELAEVDK 412
Query: 169 QLET-----QVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADTEN 214
++ T Q+ EE EL + ++ +LRQ E L+ +
Sbjct: 413 KISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463
>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 30.2 bits (69), Expect = 1.0
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 34/125 (27%)
Query: 1 ETLNLNKRSEREAKLATTEIDRFKYELNNLELE---RNRAQSEVRRLQTELYDMNQHNMT 57
ETL++ +R E+ L EID L+LE R + + ++ + Q E Y + +
Sbjct: 186 ETLDVKERLEKLLDLLEKEID-------LLQLEKRIRKKVKEQMEKSQREYY-LREQLKA 237
Query: 58 IQQEL---EASRTEAEDVKLQLQHYCCEVQRIE------EILSKKESERLDLLKHLKFIS 108
IQ+EL + + E E+++ ++IE E K E E LK L+ +S
Sbjct: 238 IQKELGEDDDDKDEVEELR----------EKIEKLKLPKEAKEKAEKE----LKKLETMS 283
Query: 109 QETAE 113
+AE
Sbjct: 284 PMSAE 288
>gnl|CDD|221016 pfam11180, DUF2968, Protein of unknown function (DUF2968). This
family of proteins has no known function.
Length = 192
Score = 29.3 bits (66), Expect = 1.1
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 9 SEREAKLATTEIDRFKYELNNLELER--NRAQSEVRRLQTELYDMNQHNMTIQQELEASR 66
+ + A+LA EI R + E +LER +++ RLQ +L + + +R
Sbjct: 94 ARQTAQLADVEIRRAQLEAQKAQLERQIAASEARAERLQADLQLAQAQEQQVAARQQQAR 153
Query: 67 TEA 69
EA
Sbjct: 154 QEA 156
>gnl|CDD|226396 COG3879, COG3879, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 247
Score = 29.7 bits (67), Expect = 1.1
Identities = 11/59 (18%), Positives = 24/59 (40%)
Query: 5 LNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELE 63
++ + + EL +L+ + N +EV L+ +L + + +T LE
Sbjct: 37 AVFQTSKGESVRRARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALE 95
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 29.5 bits (67), Expect = 1.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 10 EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQT 46
E+E +L E R + E L+ E +R + E+ RL+
Sbjct: 34 EKEKRLLLLEEQRLEAEGLRLKREVDRLREEIERLKE 70
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 29.0 bits (65), Expect = 1.6
Identities = 23/111 (20%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 29 NLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEE 88
L+ E + + ++ LQ EL D+ + ++ ELE + + + ++ L+ ++ +EE
Sbjct: 76 ELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLESLEE 135
Query: 89 ILSKKESERLDLLKHLKFISQETAE----LENNNHSLDGEMKSCKNLLAES 135
+ + E +L + L+ +E E L+ N L ++ ++LL +
Sbjct: 136 SIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQSLLEQL 186
Score = 28.2 bits (63), Expect = 2.7
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Query: 80 CCEVQRIEEILSKKESERLDLLK-HLKFISQETAELENNNHSLDGEMKSCKNLLAESEKK 138
VQ + ++ L LK L + +E +LE L+ E++ K L +
Sbjct: 63 KAPVQSVRPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLREL 122
Query: 139 VMKLEALVQDKDCSIKSLEAKLEEL----SHVTAQLETQVQCCQEEKYRLGEELAGCQET 194
+ LE ++ + SIK L +L EL +L +++ QE RL E + Q
Sbjct: 123 LKSLEERLESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQSL 182
Query: 195 LDTM 198
L+ +
Sbjct: 183 LEQL 186
>gnl|CDD|163506 TIGR03794, NHLM_micro_HlyD, NHLM bacteriocin system secretion
protein. Members of this protein family are homologs of
the HlyD membrane fusion protein of type I secretion
systems. Their occurrence in prokaryotic genomes is
associated with the occurrence of a novel class of
microcin (small bacteriocins) with a leader peptide
region related to nitrile hydratase. We designate the
class of bacteriocin as Nitrile Hydratase Leader
Microcin, or NHLM. This family, therefore, is designated
as NHLM bacteriocin system secretion protein. Some but
not all NHLM-class putative microcins belong to the TOMM
(thiazole/oxazole modified microcin) class as assessed
by the presence of the scaffolding protein and/or
cyclodehydratase in the same gene clusters [Transport
and binding proteins, Amino acids, peptides and amines,
Cellular processes, Biosynthesis of natural products].
Length = 421
Score = 29.4 bits (66), Expect = 1.7
Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 4/144 (2%)
Query: 35 NRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVK--LQLQHYCCEVQRIEEILSK 92
+ R Q + + +++EL A E + L + RI + +
Sbjct: 121 RLKEGRERHFQKSKEALEETIGRLREELAALSREVGKQRGLLSRGLATFKRDRILQQQWR 180
Query: 93 KESERLD--LLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKD 150
+E E+ D + Q A+ N L ++ L +EK++ +EA +++
Sbjct: 181 EEQEKYDAADKARAIYALQTKADERNLETVLQSLSQADFQLAGVAEKELETVEARIKEAR 240
Query: 151 CSIKSLEAKLEELSHVTAQLETQV 174
I+ LE KL + + +Q +V
Sbjct: 241 YEIEELENKLNLNTRIVSQHSGRV 264
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 28.6 bits (65), Expect = 2.5
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 5 LNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTEL 48
L ER ++L +I + + +L +LE E + + E+ RL++EL
Sbjct: 3 LEALEERNSEL-EEQIRQLELKLRDLEAENEKLERELERLKSEL 45
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 28.4 bits (64), Expect = 2.5
Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 18/114 (15%)
Query: 37 AQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESE 96
A+ + LQ EL ++ + +Q++L + E +++K +L L +
Sbjct: 64 ARERLPELQQELAELQEELAELQEQLAELQQENQELKQELS-----------TLEAELER 112
Query: 97 RLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKD 150
L +K +S EL+ N L + LAE +++ LEA +
Sbjct: 113 LQKELARIKQLSANAIELDEENREL-------REELAELKQENEALEAENERLQ 159
Score = 27.7 bits (62), Expect = 4.0
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 36 RAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKK-- 93
Q E+ LQ EL ++ + +QQE + + E ++ +L+ E+ RI+++ +
Sbjct: 70 ELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIE 129
Query: 94 -ESERLDLLKHLKFISQETAELENNNHSLDGEMK 126
+ E +L + L + QE LE N L +
Sbjct: 130 LDEENRELREELAELKQENEALEAENERLQENEQ 163
Score = 27.3 bits (61), Expect = 6.4
Identities = 20/89 (22%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 126 KSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLG 185
S + L E ++++ +L+ + + + L+ + +EL + LE +++ Q+E R+
Sbjct: 62 PSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARI- 120
Query: 186 EELAGCQETLDTMLRQKEELRLQLADTEN 214
++L+ LD + ELR +LA+ +
Sbjct: 121 KQLSANAIELD---EENRELREELAELKQ 146
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 29.0 bits (65), Expect = 2.5
Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 3/134 (2%)
Query: 31 ELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEIL 90
L+ S R + E++ ++ + +L+ ++ +E +
Sbjct: 227 RLDSWDKGSRFTRTEKVEQAATAAAEVPPAEMDTEEDRTKEREAELEALQEQIDELESSI 286
Query: 91 SKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKN---LLAESEKKVMKLEALVQ 147
+ SE L +K +++E + N L+ E K K LL ++E V KL+ALV
Sbjct: 287 EEVLSEIKALASKIKQVNEELTTVRQENEELEEEYKIKKRTVELLPDAENNVAKLQALVV 346
Query: 148 DKDCSIKSLEAKLE 161
+ L + E
Sbjct: 347 ASSERLLELAQQWE 360
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 28.9 bits (65), Expect = 2.7
Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 15/124 (12%)
Query: 91 SKKESERLDLLKHLKFISQET--AELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQD 148
+ ++ + L+ + + + + ++ K L + E++++ LEA
Sbjct: 27 VNEVRRCDEVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKEFL-DLEEEILDLEAE--- 82
Query: 149 KDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETL-----DTMLRQKE 203
IK +E LE L +LE + EEK L E L E LR E
Sbjct: 83 ----IKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEELSELSNLDIDFKYLRGAE 138
Query: 204 ELRL 207
L+L
Sbjct: 139 GLKL 142
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 28.5 bits (64), Expect = 3.1
Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 12/151 (7%)
Query: 56 MTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELE 115
QEL+ +KL + EI+ K+S DL+++L+F ++ A L+
Sbjct: 881 ERQLQELKIDVKSISSLKLVNL------ELESEIIELKKSLSSDLIENLEFKTELIARLK 934
Query: 116 NNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQ 175
+++D E ++ KL + + +K + E+L + L +
Sbjct: 935 KLLNNIDLEEGPSIEY--VKLPELNKL----HEVESKLKETSEEYEDLLKKSTILVREGN 988
Query: 176 CCQEEKYRLGEELAGCQETLDTMLRQKEELR 206
E +ELA + + ++L+
Sbjct: 989 KANSELKNFKKELAELSKQYGALQESTKQLK 1019
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 28.6 bits (65), Expect = 3.3
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 22/111 (19%)
Query: 59 QQELEASRTEAE-DVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENN 117
++E+ R E E +++ + E+Q++E+ L +KE E LD ++ LE
Sbjct: 63 KEEIHKLRNEFEKELRERRN----ELQKLEKRLLQKE-ENLD---------RKLELLEKR 108
Query: 118 NHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTA 168
L+ + K + E EKK +LE L I+ +LE +S +TA
Sbjct: 109 EEELEKKEKELEQKQQELEKKEEELEEL-------IEEQLQELERISGLTA 152
>gnl|CDD|227554 COG5229, LOC7, Chromosome condensation complex Condensin, subunit H
[Chromatin structure and dynamics / Cell division and
chromosome partitioning].
Length = 662
Score = 28.6 bits (63), Expect = 3.4
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 40 EVRRLQTELYD-----MNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKE 94
+VR+L+ ++D H+ +E +S T E + + + I ++ + +E
Sbjct: 555 DVRKLKDSVWDSVKGGSTSHDSRKNREQSSSETHTELSSTKELKFSDIFEGIPKVYNGEE 614
Query: 95 SERLDLLKHLKFIS 108
+ D+ FI
Sbjct: 615 LK--DISTSFCFIC 626
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding. This
family is the highly conserved central region of a
number of metazoan proteins referred to as growth-arrest
proteins. In mouse, Gas8 is predominantly a testicular
protein, whose expression is developmentally regulated
during puberty and spermatogenesis. In humans, it is
absent in infertile males who lack the ability to
generate gametes. The localisation of Gas8 in the
motility apparatus of post-meiotic gametocytes and
mature spermatozoa, together with the detection of Gas8
also in cilia at the apical surfaces of epithelial cells
lining the pulmonary bronchi and Fallopian tubes
suggests that the Gas8 protein may have a role in the
functioning of motile cellular appendages. Gas8 is a
microtubule-binding protein localised to regions of
dynein regulation in mammalian cells.
Length = 201
Score = 28.0 bits (63), Expect = 3.7
Identities = 28/107 (26%), Positives = 47/107 (43%)
Query: 61 ELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHS 120
E+ + E + + E +R+ E L K E E +L K LK ++ L+N
Sbjct: 35 EIAEMKKNEEHNEKLMAEIAQENKRLVEPLKKAEEEVEELRKKLKDYEKDKQSLKNLKAR 94
Query: 121 LDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVT 167
L K KNL ESE + E + +++D EA ++++ T
Sbjct: 95 LKELEKELKNLKWESEVLEQRFEKVERERDELYDKFEAAIQDVQQKT 141
>gnl|CDD|191114 pfam04859, DUF641, Plant protein of unknown function (DUF641).
Plant protein of unknown function.
Length = 132
Score = 27.3 bits (61), Expect = 3.9
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 121 LDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQ 173
L E++ ++LL E V KLEA V+ KD I SL KLEEL ++LE +
Sbjct: 79 LAAEIQEQRSLLKTYEIMVKKLEAEVRAKDSEIDSLREKLEELLVANSKLEKR 131
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 28.3 bits (63), Expect = 4.4
Identities = 32/158 (20%), Positives = 67/158 (42%), Gaps = 8/158 (5%)
Query: 19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQH 78
+I+ K L+N++ E N+ + +++L D N + + + + + +++
Sbjct: 306 DIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDY-IKKKSRYDDLNNQILELEGYEMD 364
Query: 79 YCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKK 138
Y ++ IE + K E ++ + FIS+ E + ++ E L E K
Sbjct: 365 YNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKE-------LNEINVK 417
Query: 139 VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQC 176
+ + + V + I++L L+ELS L Q C
Sbjct: 418 LQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVC 455
Score = 27.6 bits (61), Expect = 6.7
Identities = 16/108 (14%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 62 LEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSL 121
L A + + ++ +L+ E++ I++ ++ E LK ++ +S E ++ ++L
Sbjct: 178 LRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNL 237
Query: 122 DGEMKSCKNLLAESEKKVMKLE------ALVQDKDCSIKSLEAKLEEL 163
+ +L + +++ ++ +K+ K LE + ++
Sbjct: 238 KSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKI 285
>gnl|CDD|133383 cd01108, HTH_CueR, Helix-Turn-Helix DNA binding domain of CueR-like
transcription regulators. Helix-turn-helix (HTH)
transcription regulators CueR and ActP, copper efflux
regulators. In Bacillus subtilis, copper induced CueR
regulates the copZA operon, preventing copper toxicity.
In Rhizobium leguminosarum, ActP controls copper
homeostasis; it detects cytoplasmic copper stress and
activates transcription in response to increasing copper
concentrations. These proteins are comprised of two
distinct domains that harbor the regulatory
(effector-binding) site and the active (DNA-binding)
site. Their conserved N-terminal domains contain winged
HTH motifs that mediate DNA binding, while the
C-terminal domains have two conserved cysteines that
define a monovalent copper ion binding site. These
proteins share the N-terminal DNA binding domain with
other transcription regulators of the MerR superfamily
that promote transcription by reconfiguring the spacer
between the -35 and -10 promoter elements.
Length = 127
Score = 26.8 bits (60), Expect = 5.4
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 153 IKSLEAKLEELSHVTAQLETQVQCCQ 178
I LE K+ EL + L+ C
Sbjct: 88 IAELERKIAELQAMRRTLQQLADSCH 113
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome partitioning].
Length = 1480
Score = 27.9 bits (62), Expect = 6.1
Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 2/126 (1%)
Query: 21 DRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYC 80
++ + L E ER RA+ ++R+ Q +L NQ +++ + + +++ +LQ
Sbjct: 987 EKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDI- 1045
Query: 81 CEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVM 140
V+ + R +L L +LE + EM + L + E+
Sbjct: 1046 -GVRADSGAEERARIRRDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYF 1104
Query: 141 KLEALV 146
++ V
Sbjct: 1105 EMREQV 1110
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 27.5 bits (62), Expect = 7.0
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 126 KSCKNLLAESE--KKVM--------KLEALVQDKDCSIKSLEAKLEELS-HVTAQLETQV 174
K+ LLA E KKV+ +E L++DKD S K + EEL + ++E +
Sbjct: 259 KARLRLLAACEKLKKVLSANTEAPLNIECLMEDKDVSGKIKREEFEELCAPLLERVEEPL 318
Query: 175 QCCQEE 180
+ E
Sbjct: 319 EKALAE 324
>gnl|CDD|180543 PRK06361, PRK06361, hypothetical protein; Provisional.
Length = 212
Score = 26.8 bits (60), Expect = 7.8
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 94 ESERLDLLKHLKFISQETAEL--ENN 117
E E +D+L H I++E AEL EN
Sbjct: 110 ECEDVDILAHPGLITEEEAELAAENG 135
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 27.1 bits (60), Expect = 8.5
Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 12/107 (11%)
Query: 7 KRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASR 66
E E K E + E ELE+ + + R +L + Q+ L+A +
Sbjct: 523 LEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKE----AQEALKALK 578
Query: 67 TEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAE 113
E E + +L+ ++I KE + ++ L LK Q+ +
Sbjct: 579 KEVESIIRELKE--------KKIHKAKEIKSIEDLVKLKETKQKIPQ 617
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 27.0 bits (60), Expect = 9.1
Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 7/218 (3%)
Query: 1 ETLNLNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQ 60
E L K E + + E + + E+ LE + E RL+ + + +
Sbjct: 211 ELKELKKLEEIQEEQ---EEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELE 267
Query: 61 ELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHS 120
L+ E +++ L+ E++ E L + E E +L + L+ + ELE
Sbjct: 268 ALKIREEELRELERLLE----ELEEKIERLEELEREIEELEEELEGLRALLEELEELLEK 323
Query: 121 LDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEE 180
L + + L + EK +LE L ++K+ K LE +L+EL +LE +++ E
Sbjct: 324 LKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALER 383
Query: 181 KYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTK 218
+L E + +E L + EE++ +L + E +
Sbjct: 384 LKQLEEAIQELKEELAELSAALEEIQEELEELEKELEE 421
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 27.2 bits (60), Expect = 9.5
Identities = 43/197 (21%), Positives = 79/197 (40%), Gaps = 25/197 (12%)
Query: 26 ELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQR 85
+L + E+ Q ++ L+ L + + QE E + +L +
Sbjct: 157 DLEKILTEKEALQGKINILEMRLSETDARIKLAAQE--KIHVEILEEQL--------EKL 206
Query: 86 IEEILSKKESER---LDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKL 142
E+L + +E L K L + +E L+++ L E+ +AE+E++V KL
Sbjct: 207 RNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIE----VAETEERVFKL 262
Query: 143 EALVQDKDCSIKSLEAKLEELSHVTAQLET-QVQCCQEEKYRLGEELAGCQETLDTMLRQ 201
E D S++ LE+K ++L Q C E++ Q+ LD Q
Sbjct: 263 EKERSLLDASLRELESKFIVAQEDVSKLSPLQYDC-------WWEKVENLQDLLDRATNQ 315
Query: 202 KEELRLQLADTENYKTK 218
E+ L L ++ + K
Sbjct: 316 VEKAALVLDQNQDLRDK 332
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.125 0.327
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,421,428
Number of extensions: 957247
Number of successful extensions: 2148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1651
Number of HSP's successfully gapped: 461
Length of query: 224
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 131
Effective length of database: 6,812,680
Effective search space: 892461080
Effective search space used: 892461080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (25.7 bits)