RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5037
(224 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 77.2 bits (190), Expect = 1e-16
Identities = 37/206 (17%), Positives = 92/206 (44%)
Query: 6 NKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEAS 65
K+ +++ +++ + L+LE+ A ++++++ ++ M N + +E +
Sbjct: 950 KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009
Query: 66 RTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEM 125
D+ L + + + ++ +K ES +L LK + ELE L+GE
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069
Query: 126 KSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLG 185
+AE + ++ +L+A + K+ +++ A+LE+ + +++ + L
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129
Query: 186 EELAGCQETLDTMLRQKEELRLQLAD 211
E+L + + +QK +L +L
Sbjct: 1130 EDLESEKAARNKAEKQKRDLSEELEA 1155
Score = 60.6 bits (147), Expect = 5e-11
Identities = 34/215 (15%), Positives = 79/215 (36%)
Query: 10 EREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEA 69
E I+ + L+ E+ + Q ++ L+ +L + +Q E + +
Sbjct: 926 EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI 985
Query: 70 EDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCK 129
+ ++ + + ++ + E DL +L ++ L + + + +
Sbjct: 986 KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE 1045
Query: 130 NLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELA 189
L + EK +LE + + + L ++ EL A+L+ Q+ +EE L
Sbjct: 1046 VRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLE 1105
Query: 190 GCQETLDTMLRQKEELRLQLADTENYKTKESAPMA 224
+ L++ EL ++D + E A
Sbjct: 1106 DETSQKNNALKKIRELESHISDLQEDLESEKAARN 1140
Score = 60.6 bits (147), Expect = 6e-11
Identities = 42/208 (20%), Positives = 84/208 (40%), Gaps = 3/208 (1%)
Query: 6 NKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEAS 65
++ + K +I + + N L ER + V L T L + + + +
Sbjct: 978 KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037
Query: 66 RTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEM 125
+ +++++L+ Q +E+I K E E DL + + + + AEL+ + E+
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEEL 1097
Query: 126 KSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLG 185
++ L + + +++ + I L+ LE + E Q + EE L
Sbjct: 1098 QAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALK 1157
Query: 186 EELAGCQETLDTMLRQKEELRLQLADTE 213
EL ++TLDT Q+E D +
Sbjct: 1158 TEL---EDTLDTTATQQELRGSDYKDDD 1182
Score = 59.5 bits (144), Expect = 1e-10
Identities = 34/195 (17%), Positives = 80/195 (41%), Gaps = 7/195 (3%)
Query: 19 EIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQH 78
E+ EL + + +A++E++ L+ + + + +Q++L+A + +
Sbjct: 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917
Query: 79 YCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKK 138
+ Q +EEIL + R++ + + + +L+ + +M + L E E
Sbjct: 918 LAAKKQELEEIL-HEMEARIEEEE------ERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970
Query: 139 VMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTM 198
KL+ D IK +E + + +L + + +E L LA +E +
Sbjct: 971 RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030
Query: 199 LRQKEELRLQLADTE 213
+ K + +++ E
Sbjct: 1031 TKLKNKHESMISELE 1045
Score = 55.6 bits (134), Expect = 3e-09
Identities = 40/223 (17%), Positives = 87/223 (39%), Gaps = 7/223 (3%)
Query: 6 NKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEAS 65
+ + E L ++ E R R ++ + L+ L++M ++ +
Sbjct: 887 HTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQL 946
Query: 66 RTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEM 125
+ E + ++ Q+ +++ E K + E++ +K + + +E+ N+ L E
Sbjct: 947 QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKER 1006
Query: 126 KSCKNL-------LAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ 178
K + LAE E+K L L + I LE +L++ +LE + +
Sbjct: 1007 KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066
Query: 179 EEKYRLGEELAGCQETLDTMLRQKEELRLQLADTENYKTKESA 221
E L E++A Q + + Q + +L E++
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETS 1109
Score = 40.6 bits (95), Expect = 2e-04
Identities = 28/162 (17%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 59 QQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNN 118
++E++A E + K + Q E++ +E+ ++ E+ L + L+ ++ AE E
Sbjct: 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915
Query: 119 HSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ 178
L + + + +L E E ++ + E Q K ++ ++ +L + E Q Q
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975
Query: 179 EEKY-------RLGEELAGCQETLDTMLRQKEELRLQLADTE 213
EK ++ +++ ++ + + ++++ L +++D
Sbjct: 976 LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017
Score = 35.6 bits (82), Expect = 0.011
Identities = 14/127 (11%), Positives = 45/127 (35%), Gaps = 14/127 (11%)
Query: 1 ETLNLNKRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTEL------------ 48
E + ++ E E+ +I + ++ L+ + + + E++ L
Sbjct: 1057 ELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALK 1116
Query: 49 --YDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKF 106
++ H +Q++LE+ + + Q + E++ ++ L +
Sbjct: 1117 KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGS 1176
Query: 107 ISQETAE 113
++ +
Sbjct: 1177 DYKDDDD 1183
Score = 29.8 bits (67), Expect = 0.77
Identities = 29/137 (21%), Positives = 62/137 (45%), Gaps = 21/137 (15%)
Query: 82 EVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMK 141
E+Q +E L + + + LK + Q+ +L + L ++++ L AE+E+ ++
Sbjct: 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917
Query: 142 LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQ 201
L A Q+ + + +EA++EE + QL+ EK ++ +++
Sbjct: 918 LAAKKQELEEILHEMEARIEEEEERSQQLQ-------AEKKKMQQQM------------- 957
Query: 202 KEELRLQLADTENYKTK 218
+L QL + E + K
Sbjct: 958 -LDLEEQLEEEEAARQK 973
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 54.7 bits (132), Expect = 6e-09
Identities = 32/196 (16%), Positives = 75/196 (38%), Gaps = 4/196 (2%)
Query: 22 RFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCC 81
R KY++ E + Q VR ++ + + R A+ +L+
Sbjct: 855 RNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEAR 914
Query: 82 EVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMK 141
V+R +++ E++ + L + + ++E L ++L+ + L +++
Sbjct: 915 SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974
Query: 142 LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTML-- 199
E ++ + SL+ ++ +L Q +T+ + +E + E L
Sbjct: 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTL 1034
Query: 200 --RQKEELRLQLADTE 213
+KEEL ++ D
Sbjct: 1035 LKTEKEELNRRIHDQA 1050
Score = 52.0 bits (125), Expect = 4e-08
Identities = 31/198 (15%), Positives = 71/198 (35%), Gaps = 15/198 (7%)
Query: 9 SEREAKLATTEIDRFKYE---LNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEAS 65
+A E+ + K E + + ++++ +LQ ++ + N+ + L
Sbjct: 895 CCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY----KSLLEK 950
Query: 66 RTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEM 125
E +++ E L E E + + + +E A+L H E
Sbjct: 951 MNNLEI---TYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007
Query: 126 KSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLG 185
K + ++K + E LV + L+ + EEL+ ++ + + +L
Sbjct: 1008 K---TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT--ETMEKKLV 1062
Query: 186 EELAGCQETLDTMLRQKE 203
EE + L+ + +
Sbjct: 1063 EETKQLELDLNDERLRYQ 1080
Score = 46.6 bits (111), Expect = 3e-06
Identities = 35/224 (15%), Positives = 80/224 (35%), Gaps = 28/224 (12%)
Query: 8 RSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRT 67
+ + + L + R + LQ M + ++EA
Sbjct: 859 QMMLREHKSIIIQKHVRGWLARVHYHRTLK--AIVYLQCCYRRMMAKRELKKLKIEARSV 916
Query: 68 EA-EDVKLQLQHYCCEVQ-RIEEI-----------------LSKKESERLDLLKHLKFIS 108
E + + + L++ ++Q +I+E S + + ++ L+
Sbjct: 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE 976
Query: 109 QETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTA 168
+E N SL E+ + L +++ + +E + L ++L+E
Sbjct: 977 EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKE---QNT 1033
Query: 169 QLETQVQCCQEEKYRLGEELAGCQETLDTMLR-QKEELRLQLAD 211
L+T+ +E R+ ++ ET++ L + ++L L L D
Sbjct: 1034 LLKTEK---EELNRRIHDQAKEITETMEKKLVEETKQLELDLND 1074
Score = 45.1 bits (107), Expect = 8e-06
Identities = 29/156 (18%), Positives = 53/156 (33%), Gaps = 7/156 (4%)
Query: 59 QQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNN 118
+ RT V LQ + +R + L K E+ ++ K L LEN
Sbjct: 878 LARVHYHRTLKAIVYLQCCYRRMMAKRELKKL-KIEARSVERYKKLH------IGLENKI 930
Query: 119 HSLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ 178
L ++ +K+ LE + ++S +L +V Q
Sbjct: 931 MQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ 990
Query: 179 EEKYRLGEELAGCQETLDTMLRQKEELRLQLADTEN 214
EE +L +EL Q T+ ++ + + +
Sbjct: 991 EEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026
Score = 42.4 bits (100), Expect = 7e-05
Identities = 25/192 (13%), Positives = 59/192 (30%), Gaps = 9/192 (4%)
Query: 26 ELNNLELERNRAQSEVRRLQTELYDMNQ---HNMTIQQELEASRTEAEDVKLQLQHYCCE 82
+ Q+ +R H I Q+ L+
Sbjct: 834 RYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYL 893
Query: 83 VQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKL 142
+++K+E LK LK ++ + + L+ ++ + + E K+ L
Sbjct: 894 QCCYRRMMAKRE------LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSL 947
Query: 143 EALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQK 202
+ + + + + KL E + + L EE+A ++ L +K
Sbjct: 948 LEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007
Query: 203 EELRLQLADTEN 214
+ + ++
Sbjct: 1008 KTIEEWADKYKH 1019
Score = 37.0 bits (86), Expect = 0.004
Identities = 17/115 (14%), Positives = 45/115 (39%), Gaps = 3/115 (2%)
Query: 7 KRSEREAKLATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASR 66
+ +++ E + +L+ E + + E+ + QTE + + + E E
Sbjct: 966 RSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLV 1025
Query: 67 TEAEDVKLQLQHYCCEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSL 121
+E ++ L+ E + + + + E + ++ + EL+ N+ L
Sbjct: 1026 SELKEQNTLLKT---EKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.003
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 34/113 (30%)
Query: 116 NNNHSLD---GEMK-SCKNLLAESEKKVMKLEALVQDKDC-----SIKSLEAKLEELSHV 166
+++H +D GE + K++L+ E +A V + DC KS+ +K EE+ H+
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFE------DAFVDNFDCKDVQDMPKSILSK-EEIDHI 54
Query: 167 TAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLADT---ENYK 216
+ RL T+L ++EE+ + + NYK
Sbjct: 55 IMSKDAVSGT-----LRL----------FWTLLSKQEEMVQKFVEEVLRINYK 92
Score = 35.6 bits (81), Expect = 0.011
Identities = 32/208 (15%), Positives = 58/208 (27%), Gaps = 56/208 (26%)
Query: 21 DRFKYELNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYC 80
K E + + RL + ++N
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN------------------------- 130
Query: 81 CEVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSC-KNLLAESEKKV 139
V R++ L +++ L L+ K + +DG + K +A V
Sbjct: 131 --VSRLQPYLKLRQA--LLELRPAKNV------------LIDG-VLGSGKTWVA---LDV 170
Query: 140 MKLEALVQDKDCSI--------KSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGC 191
+ D I S E LE L + Q++ + + +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 192 QETLDTMLRQKEELR--LQLADTENYKT 217
Q L +L+ K L L + +N K
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKA 258
Score = 33.7 bits (76), Expect = 0.052
Identities = 27/185 (14%), Positives = 59/185 (31%), Gaps = 28/185 (15%)
Query: 33 ERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSK 92
N ++ + LQ LY ++ + + + ++ + +L
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ----------AELRRLLKS 240
Query: 93 KESER-LDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQDKDC 151
K E L +L +++ + + + + SCK LL K+V +
Sbjct: 241 KPYENCLLVLLNVQ--NAKAWN------AFNL---SCKILLTTRFKQVTDFLSAATTTHI 289
Query: 152 SIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEELRLQLAD 211
S+ L ++ L E+ +++ E +R LA
Sbjct: 290 SLDHHSMTLTP----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII--AESIRDGLAT 343
Query: 212 TENYK 216
+N+K
Sbjct: 344 WDNWK 348
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.17
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 22/44 (50%)
Query: 136 EKKVMKLEALVQDKDCSIKSLEAKLE--------ELSHVTAQLE 171
EK+ ++K L+A L+ L+ + A +E
Sbjct: 18 EKQ-------------ALKKLQASLKLYADDSAPALA-IKATME 47
Score = 26.5 bits (57), Expect = 5.1
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 9/35 (25%)
Query: 33 ERNRAQSEVRRLQT--ELY--DMNQHNMTIQQELE 63
E+ +++LQ +LY D + + I+ +E
Sbjct: 18 EKQ----ALKKLQASLKLYADD-SAPALAIKATME 47
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 29.8 bits (66), Expect = 0.85
Identities = 22/176 (12%), Positives = 58/176 (32%), Gaps = 12/176 (6%)
Query: 38 QSEVRRLQTELY----DMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKK 93
Q + + ++ D+ Q ++ + + +K Q S
Sbjct: 15 QQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQ----DLNGNNQSVT 70
Query: 94 ESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESE----KKVMKLEALVQDK 149
+ L + L + Q + + L M+ + L + E K+ ++ +
Sbjct: 71 RQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIACIGGPP 130
Query: 150 DCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQKEEL 205
+ + LE + L+ Q Q++ +E + ++ + + + + EL
Sbjct: 131 NICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKGDPIVQHRPMLEERIVEL 186
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 1.2
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 18/84 (21%)
Query: 15 LATTEIDRFKYELNNLELERNRAQSEVRRLQTELYDM-NQHNMTIQQE---------LEA 64
+ ++ KYE S +R ++ EL++ N + QE EA
Sbjct: 885 VDDKDVKA-KYE------TSILEHSGIRLIEPELFNGYNPEKKEMIQEVIVEEDLEPFEA 937
Query: 65 SRTEAEDVKLQLQHYCCEVQRIEE 88
S+ AE K Q ++ I E
Sbjct: 938 SKETAEQFKHQHGDK-VDIFEIPE 960
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 28.4 bits (63), Expect = 2.4
Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 8/165 (4%)
Query: 27 LNNLELERNRAQSEVRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRI 86
L LE E+ ++ + + + + + Q V
Sbjct: 99 LKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSY 158
Query: 87 EEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLA---ESEKKVMKLE 143
+IL +E ++ L + +E E + + E + + L E E+ M+ E
Sbjct: 159 NKIL-TEEDLQMRRLA--TALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEE 215
Query: 144 ALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ--EEKYRLGE 186
A+ + + LEA EE+ + A + T V + E Y+L +
Sbjct: 216 AIQEIAGMTADVLEAASEEVPLIGAGMATAVATGRAIEGAYKLKK 260
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 27.1 bits (59), Expect = 4.8
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 134 ESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQE 193
E + KV ++ V + IKSLE +E + +T E + Q
Sbjct: 6 ELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDF---KCKTLQNREHETNGVAKSDQKQEQL 62
Query: 194 TLDTMLRQKEELRLQLAD 211
L M + R ++
Sbjct: 63 LLKKMYLMLDNKRKEVVH 80
>1q06_A Transcriptional regulator CUER; MERR family transcriptional
regulator, copper efflux regulator; 2.07A {Escherichia
coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Length = 135
Score = 26.1 bits (58), Expect = 6.1
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 120 SLDGEMKSCKNLLAESEKKVMKLEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQ 178
+L+ E NL + ++ ++ +K + +E +EEL + QL C
Sbjct: 59 NLE-ESGELVNLFNDPQRHSADVKRRTLEK---VAEIERHIEELQSMRDQLLALANACP 113
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 26.1 bits (58), Expect = 9.7
Identities = 10/54 (18%), Positives = 22/54 (40%)
Query: 95 SERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMKLEALVQD 148
S+ L + + + ++ A L+ + MK +L + E L +Q+
Sbjct: 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.125 0.327
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,999,984
Number of extensions: 164505
Number of successful extensions: 677
Number of sequences better than 10.0: 1
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 224
Length of query: 224
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,188,903
Effective search space: 561313002
Effective search space used: 561313002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.7 bits)