RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5037
         (224 letters)



>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA
           domain 2 {Streptococcus equisimilis [TaxId: 119602]}
          Length = 175

 Score = 25.9 bits (56), Expect = 3.0
 Identities = 17/138 (12%), Positives = 43/138 (31%)

Query: 82  EVQRIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEMKSCKNLLAESEKKVMK 141
           E  +I  ++++K  ER  L+  +    +     +     + G  K   ++  +   K  +
Sbjct: 3   EFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGDVYGRPKHIYSIYRKMRDKKKR 62

Query: 142 LEALVQDKDCSIKSLEAKLEELSHVTAQLETQVQCCQEEKYRLGEELAGCQETLDTMLRQ 201
            + +                           +    + + Y    +  G Q    T+   
Sbjct: 63  FDQIFDLIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGP 122

Query: 202 KEELRLQLADTENYKTKE 219
           K  + +Q+   E ++  E
Sbjct: 123 KGPIEIQIRTKEMHQVAE 140


>d2e9xa1 a.278.1.1 (A:1-144) DNA replication complex GINS protein
           PSF1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 144

 Score = 25.5 bits (56), Expect = 3.8
 Identities = 9/66 (13%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 41  VRRLQTELYDMNQHNMTIQQELEASRTEAEDVKLQLQHYCCEVQRIEEILSKKESERLDL 100
           +R++  E+  + + N +   E ++         ++ +H      R          +RL  
Sbjct: 29  LRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLL--RNRRCTVAYLYDRLLR 86

Query: 101 LKHLKF 106
           ++ L++
Sbjct: 87  IRALRW 92


>d1r31a2 d.179.1.1 (A:3-110,A:221-378) Substrate-binding domain of
           HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]}
          Length = 266

 Score = 25.0 bits (54), Expect = 7.0
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 85  RIEEILSKKESERLDLLKHLKFISQETAELENNNHSLDGEM 125
           R+    +   + RLD +  L  +S +   L  N  +L  ++
Sbjct: 4   RLPAFRNLSPAARLDHIGQLLGLSHDDVSLLANAGALPMDI 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.125    0.327 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 712,929
Number of extensions: 30668
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 38
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.8 bits)