Query psy504
Match_columns 358
No_of_seqs 373 out of 2066
Neff 7.5
Searched_HMMs 46136
Date Sat Aug 17 00:13:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1680|consensus 100.0 7.4E-44 1.6E-48 325.1 10.7 189 30-230 29-217 (290)
2 PRK06143 enoyl-CoA hydratase; 100.0 8.1E-43 1.7E-47 326.8 13.9 208 41-258 10-217 (256)
3 PLN02600 enoyl-CoA hydratase 100.0 1.1E-42 2.4E-47 324.9 13.9 178 45-231 2-179 (251)
4 PRK05980 enoyl-CoA hydratase; 100.0 2E-42 4.3E-47 324.9 14.8 183 43-234 8-194 (260)
5 PRK09076 enoyl-CoA hydratase; 100.0 2.2E-42 4.9E-47 324.1 14.3 205 43-257 8-212 (258)
6 PRK07657 enoyl-CoA hydratase; 100.0 3.7E-42 8E-47 323.0 14.6 186 44-238 10-195 (260)
7 PRK09120 p-hydroxycinnamoyl Co 100.0 2.9E-42 6.3E-47 326.1 13.4 186 44-239 14-203 (275)
8 PRK08150 enoyl-CoA hydratase; 100.0 5.7E-42 1.2E-46 320.8 13.9 181 43-235 7-187 (255)
9 PRK06142 enoyl-CoA hydratase; 100.0 5.1E-42 1.1E-46 324.1 13.5 206 43-258 11-228 (272)
10 PLN02664 enoyl-CoA hydratase/d 100.0 7.9E-42 1.7E-46 323.3 14.7 205 43-257 13-229 (275)
11 PRK07327 enoyl-CoA hydratase; 100.0 1.1E-41 2.4E-46 321.1 15.0 182 40-231 14-197 (268)
12 PRK06127 enoyl-CoA hydratase; 100.0 7.9E-42 1.7E-46 322.3 13.8 186 44-238 17-204 (269)
13 TIGR03210 badI 2-ketocyclohexa 100.0 8.1E-42 1.8E-46 320.0 13.7 185 43-237 7-191 (256)
14 PRK05864 enoyl-CoA hydratase; 100.0 1.3E-41 2.7E-46 322.0 14.8 188 33-230 5-200 (276)
15 PRK09674 enoyl-CoA hydratase-i 100.0 8.4E-42 1.8E-46 319.7 13.4 178 42-231 6-183 (255)
16 PRK06563 enoyl-CoA hydratase; 100.0 5.7E-42 1.2E-46 320.9 11.7 178 43-230 4-182 (255)
17 TIGR02280 PaaB1 phenylacetate 100.0 1.1E-41 2.4E-46 319.1 13.6 184 42-236 3-189 (256)
18 PRK05862 enoyl-CoA hydratase; 100.0 9.8E-42 2.1E-46 319.6 13.2 177 43-231 9-185 (257)
19 PRK05869 enoyl-CoA hydratase; 100.0 9.9E-42 2.1E-46 312.9 12.7 176 45-231 15-190 (222)
20 PRK06190 enoyl-CoA hydratase; 100.0 1.4E-41 3E-46 318.6 13.6 202 44-257 10-211 (258)
21 PRK05870 enoyl-CoA hydratase; 100.0 9.4E-42 2E-46 318.3 12.2 174 43-226 8-181 (249)
22 PRK09245 enoyl-CoA hydratase; 100.0 1.6E-41 3.4E-46 319.8 13.6 205 43-257 8-220 (266)
23 PRK06144 enoyl-CoA hydratase; 100.0 2.4E-41 5.2E-46 317.9 14.7 182 43-233 13-196 (262)
24 PRK08138 enoyl-CoA hydratase; 100.0 2E-41 4.3E-46 318.3 14.0 177 42-230 12-188 (261)
25 PRK05809 3-hydroxybutyryl-CoA 100.0 2E-41 4.4E-46 318.0 13.8 208 43-259 9-217 (260)
26 PRK07658 enoyl-CoA hydratase; 100.0 2E-41 4.2E-46 317.6 13.2 178 43-231 7-185 (257)
27 PRK07511 enoyl-CoA hydratase; 100.0 2.4E-41 5.2E-46 317.5 13.6 178 43-230 8-188 (260)
28 PRK05674 gamma-carboxygeranoyl 100.0 2.6E-41 5.7E-46 318.1 13.8 182 39-231 7-191 (265)
29 PRK07260 enoyl-CoA hydratase; 100.0 2.9E-41 6.3E-46 316.1 13.7 184 44-237 8-195 (255)
30 COG1024 CaiD Enoyl-CoA hydrata 100.0 8E-41 1.7E-45 313.5 16.6 175 44-228 11-186 (257)
31 PRK08140 enoyl-CoA hydratase; 100.0 3.4E-41 7.3E-46 316.9 14.1 181 43-234 9-193 (262)
32 PRK08139 enoyl-CoA hydratase; 100.0 3.2E-41 6.9E-46 317.6 13.9 185 43-238 16-201 (266)
33 PRK08258 enoyl-CoA hydratase; 100.0 4.9E-41 1.1E-45 318.2 15.0 185 44-238 23-212 (277)
34 PRK06023 enoyl-CoA hydratase; 100.0 2.5E-41 5.4E-46 315.8 12.8 201 47-258 15-215 (251)
35 TIGR01929 menB naphthoate synt 100.0 2.4E-41 5.3E-46 317.3 12.6 178 45-231 10-188 (259)
36 PRK07468 enoyl-CoA hydratase; 100.0 5.1E-41 1.1E-45 315.6 14.2 176 45-231 12-190 (262)
37 PLN02888 enoyl-CoA hydratase 100.0 4.1E-41 9E-46 316.7 13.2 186 40-238 12-197 (265)
38 PRK06688 enoyl-CoA hydratase; 100.0 3.2E-41 6.9E-46 316.4 12.4 177 43-230 10-186 (259)
39 PRK05995 enoyl-CoA hydratase; 100.0 5.6E-41 1.2E-45 315.3 13.8 185 43-238 9-196 (262)
40 PRK07799 enoyl-CoA hydratase; 100.0 5E-41 1.1E-45 315.9 13.0 178 43-231 10-191 (263)
41 PRK06494 enoyl-CoA hydratase; 100.0 5E-41 1.1E-45 315.2 12.8 178 43-232 9-186 (259)
42 PRK08260 enoyl-CoA hydratase; 100.0 1E-40 2.2E-45 318.8 14.6 178 43-230 9-203 (296)
43 PRK08252 enoyl-CoA hydratase; 100.0 6.2E-41 1.3E-45 313.7 12.7 200 43-256 8-208 (254)
44 PRK08788 enoyl-CoA hydratase; 100.0 1.1E-40 2.4E-45 316.1 14.4 198 24-233 5-214 (287)
45 PF00378 ECH: Enoyl-CoA hydrat 100.0 1.6E-41 3.4E-46 315.9 8.3 207 42-258 2-208 (245)
46 PRK07396 dihydroxynaphthoic ac 100.0 7.6E-41 1.6E-45 316.2 12.9 205 43-257 18-224 (273)
47 PRK07659 enoyl-CoA hydratase; 100.0 8E-41 1.7E-45 314.0 12.7 173 43-226 11-184 (260)
48 KOG1679|consensus 100.0 1.1E-40 2.3E-45 292.9 12.4 232 33-273 26-262 (291)
49 PRK08259 enoyl-CoA hydratase; 100.0 6.5E-41 1.4E-45 313.5 11.7 183 44-238 9-191 (254)
50 PRK03580 carnitinyl-CoA dehydr 100.0 8.8E-41 1.9E-45 313.9 12.6 182 43-235 8-189 (261)
51 PRK05981 enoyl-CoA hydratase; 100.0 1.3E-40 2.8E-45 313.5 13.5 181 44-234 10-197 (266)
52 PRK07110 polyketide biosynthes 100.0 1.5E-40 3.2E-45 310.3 13.7 181 41-234 8-188 (249)
53 PRK11423 methylmalonyl-CoA dec 100.0 1.2E-40 2.5E-45 313.0 12.5 205 43-258 9-214 (261)
54 PLN02921 naphthoate synthase 100.0 3.7E-40 8.1E-45 317.9 15.6 204 45-257 74-278 (327)
55 TIGR03189 dienoyl_CoA_hyt cycl 100.0 2.4E-40 5.1E-45 309.2 13.8 172 43-229 6-177 (251)
56 PLN02851 3-hydroxyisobutyryl-C 100.0 1.3E-40 2.8E-45 327.7 12.1 253 42-330 46-303 (407)
57 PRK07509 enoyl-CoA hydratase; 100.0 2.5E-40 5.5E-45 310.9 13.2 175 44-228 9-190 (262)
58 PRK06210 enoyl-CoA hydratase; 100.0 2.4E-40 5.3E-45 312.6 12.9 177 44-230 11-198 (272)
59 PLN03214 probable enoyl-CoA hy 100.0 5.1E-40 1.1E-44 311.2 13.9 177 45-231 19-199 (278)
60 PRK07827 enoyl-CoA hydratase; 100.0 7.7E-40 1.7E-44 307.3 14.3 175 43-228 11-188 (260)
61 PLN02157 3-hydroxyisobutyryl-C 100.0 1E-39 2.2E-44 321.3 15.7 178 43-231 42-223 (401)
62 PRK07938 enoyl-CoA hydratase; 100.0 7E-40 1.5E-44 305.7 13.5 176 43-232 7-183 (249)
63 PRK07854 enoyl-CoA hydratase; 100.0 8E-40 1.7E-44 304.2 13.5 168 44-227 6-173 (243)
64 PRK05617 3-hydroxyisobutyryl-C 100.0 1.4E-39 3.1E-44 316.3 15.4 178 43-230 8-189 (342)
65 PRK06495 enoyl-CoA hydratase; 100.0 8.2E-40 1.8E-44 306.6 12.8 200 43-256 9-211 (257)
66 PLN02988 3-hydroxyisobutyryl-C 100.0 1.6E-39 3.4E-44 318.9 14.1 185 44-239 15-203 (381)
67 TIGR03200 dearomat_oah 6-oxocy 100.0 2E-39 4.3E-44 311.4 14.2 175 48-231 38-215 (360)
68 PRK06072 enoyl-CoA hydratase; 100.0 1.7E-39 3.7E-44 303.0 12.6 169 43-225 5-173 (248)
69 PRK08321 naphthoate synthase; 100.0 7.7E-39 1.7E-43 306.5 15.6 204 45-257 32-253 (302)
70 PLN02874 3-hydroxyisobutyryl-C 100.0 8.8E-39 1.9E-43 314.4 15.6 176 44-230 17-194 (379)
71 PRK08290 enoyl-CoA hydratase; 100.0 1E-38 2.2E-43 303.8 14.1 183 44-238 10-214 (288)
72 PRK08272 enoyl-CoA hydratase; 100.0 1.9E-38 4.2E-43 303.9 13.1 201 44-257 16-241 (302)
73 PRK07112 polyketide biosynthes 100.0 1.8E-38 3.9E-43 297.2 12.4 174 44-230 10-185 (255)
74 PRK06213 enoyl-CoA hydratase; 100.0 2.1E-38 4.5E-43 292.3 12.1 201 43-257 8-209 (229)
75 PRK12478 enoyl-CoA hydratase; 100.0 3.6E-38 7.8E-43 301.2 12.7 201 43-257 10-226 (298)
76 TIGR03222 benzo_boxC benzoyl-C 100.0 1.7E-37 3.7E-42 315.6 14.9 246 11-267 232-505 (546)
77 PRK11730 fadB multifunctional 100.0 2.8E-37 6.1E-42 325.7 16.1 180 41-230 10-192 (715)
78 PLN02267 enoyl-CoA hydratase/i 100.0 4.6E-37 1E-41 285.0 14.3 173 44-228 6-184 (239)
79 PRK08184 benzoyl-CoA-dihydrodi 100.0 4.3E-37 9.2E-42 313.6 15.1 248 11-267 236-509 (550)
80 TIGR02437 FadB fatty oxidation 100.0 1.2E-36 2.5E-41 320.6 16.1 181 40-230 9-192 (714)
81 cd06558 crotonase-like Crotona 100.0 2.6E-36 5.6E-41 270.7 14.7 176 43-228 4-181 (195)
82 KOG1681|consensus 100.0 6E-37 1.3E-41 271.5 10.0 223 43-275 27-264 (292)
83 KOG0016|consensus 100.0 2.4E-36 5.2E-41 273.4 12.7 225 41-275 10-242 (266)
84 PRK11154 fadJ multifunctional 100.0 5.7E-36 1.2E-40 315.8 16.8 181 41-230 9-193 (708)
85 TIGR02440 FadJ fatty oxidation 100.0 1.2E-35 2.6E-40 312.7 16.8 179 42-230 5-188 (699)
86 TIGR02441 fa_ox_alpha_mit fatt 100.0 1.9E-35 4.1E-40 312.1 16.8 175 44-228 19-198 (737)
87 TIGR03222 benzo_boxC benzoyl-C 100.0 9.5E-35 2.1E-39 295.5 17.5 182 44-234 17-218 (546)
88 KOG1684|consensus 100.0 1.9E-34 4.2E-39 270.8 14.4 257 39-330 39-302 (401)
89 PRK08184 benzoyl-CoA-dihydrodi 100.0 5.6E-34 1.2E-38 290.8 16.0 178 44-230 21-218 (550)
90 COG0447 MenB Dihydroxynaphthoi 100.0 6.2E-32 1.3E-36 238.1 9.3 196 42-248 23-225 (282)
91 KOG1682|consensus 100.0 1.9E-29 4.2E-34 220.4 11.2 184 44-238 38-222 (287)
92 PF14652 DUF4457: Domain of un 99.9 6.5E-28 1.4E-32 232.7 1.9 156 188-346 51-285 (329)
93 PF14652 DUF4457: Domain of un 99.7 3.5E-19 7.7E-24 172.1 1.6 79 255-333 3-81 (329)
94 cd07014 S49_SppA Signal peptid 99.7 1.1E-17 2.4E-22 148.3 6.8 136 66-227 23-168 (177)
95 cd07020 Clp_protease_NfeD_1 No 99.7 5.1E-17 1.1E-21 145.4 8.6 145 49-228 2-165 (187)
96 cd07019 S49_SppA_1 Signal pept 99.6 6.1E-15 1.3E-19 134.4 8.8 120 48-188 2-133 (211)
97 TIGR00705 SppA_67K signal pept 99.4 1.5E-12 3.3E-17 135.0 9.7 155 44-226 306-509 (584)
98 cd00394 Clp_protease_like Case 99.4 1.6E-12 3.4E-17 113.3 8.0 135 62-225 8-161 (161)
99 cd07022 S49_Sppa_36K_type Sign 99.3 5.8E-12 1.3E-16 115.1 9.9 96 54-167 13-109 (214)
100 cd07016 S14_ClpP_1 Caseinolyti 99.3 3.5E-12 7.6E-17 111.2 5.1 129 65-225 15-160 (160)
101 cd07023 S49_Sppa_N_C Signal pe 99.2 5.7E-11 1.2E-15 108.0 8.2 101 48-167 2-102 (208)
102 TIGR00706 SppA_dom signal pept 99.2 8.1E-11 1.8E-15 107.0 7.8 94 48-167 2-97 (207)
103 cd07021 Clp_protease_NfeD_like 99.0 8.7E-10 1.9E-14 97.8 8.5 95 49-169 2-96 (178)
104 cd07018 S49_SppA_67K_type Sign 99.0 1.5E-09 3.2E-14 99.8 8.5 87 63-167 27-113 (222)
105 cd07013 S14_ClpP Caseinolytic 98.3 1.3E-06 2.9E-11 76.4 7.1 85 62-166 9-95 (162)
106 cd07015 Clp_protease_NfeD Nodu 98.3 2.1E-06 4.5E-11 75.7 7.5 137 61-228 9-165 (172)
107 PRK00277 clpP ATP-dependent Cl 98.3 4.4E-06 9.6E-11 75.6 9.0 136 61-230 39-198 (200)
108 KOG1683|consensus 98.2 3E-07 6.4E-12 88.5 0.6 167 47-228 66-240 (380)
109 PRK10949 protease 4; Provision 98.2 1.2E-05 2.6E-10 84.1 12.1 101 45-165 325-430 (618)
110 CHL00198 accA acetyl-CoA carbo 97.9 0.00026 5.7E-09 68.0 14.5 140 59-229 132-271 (322)
111 PRK12319 acetyl-CoA carboxylas 97.9 0.00036 7.9E-09 65.4 13.8 140 59-229 76-215 (256)
112 PRK12553 ATP-dependent Clp pro 97.8 4.8E-05 1E-09 69.2 7.6 139 61-229 43-203 (207)
113 cd07017 S14_ClpP_2 Caseinolyti 97.8 1.9E-05 4.2E-10 69.6 4.8 91 62-172 18-110 (171)
114 PF01972 SDH_sah: Serine dehyd 97.8 6.9E-05 1.5E-09 70.0 8.5 152 60-239 70-255 (285)
115 PLN03230 acetyl-coenzyme A car 97.8 0.00058 1.3E-08 67.4 14.5 139 60-229 200-338 (431)
116 PLN03229 acetyl-coenzyme A car 97.8 0.00035 7.7E-09 73.1 13.6 140 59-229 220-359 (762)
117 TIGR00513 accA acetyl-CoA carb 97.7 0.00088 1.9E-08 64.4 14.5 140 59-229 129-268 (316)
118 PRK14512 ATP-dependent Clp pro 97.7 0.00018 3.8E-09 65.0 8.2 87 62-168 32-120 (197)
119 PF00574 CLP_protease: Clp pro 97.6 9.5E-05 2.1E-09 65.7 5.8 97 50-173 18-118 (182)
120 PRK05724 acetyl-CoA carboxylas 97.6 0.0013 2.8E-08 63.4 13.1 140 59-229 129-268 (319)
121 TIGR00493 clpP ATP-dependent C 97.5 0.00069 1.5E-08 60.8 9.0 134 62-227 35-190 (191)
122 CHL00028 clpP ATP-dependent Cl 97.4 0.00071 1.5E-08 61.2 8.4 91 62-172 39-131 (200)
123 TIGR03133 malonate_beta malona 97.4 0.0028 6.1E-08 59.9 12.4 107 48-166 61-173 (274)
124 COG0616 SppA Periplasmic serin 97.2 0.0012 2.7E-08 63.9 8.5 89 66-172 81-169 (317)
125 PRK07189 malonate decarboxylas 97.2 0.0026 5.6E-08 60.9 10.3 108 47-166 69-182 (301)
126 CHL00174 accD acetyl-CoA carbo 97.1 0.015 3.3E-07 55.4 14.0 155 48-239 135-290 (296)
127 PRK14514 ATP-dependent Clp pro 97.0 0.0033 7.3E-08 57.6 8.7 88 61-170 62-153 (221)
128 TIGR00515 accD acetyl-CoA carb 97.0 0.022 4.8E-07 54.2 14.5 157 44-240 117-277 (285)
129 PRK12551 ATP-dependent Clp pro 97.0 0.0034 7.3E-08 56.6 8.3 89 61-169 33-123 (196)
130 PRK14513 ATP-dependent Clp pro 96.8 0.0069 1.5E-07 54.8 9.1 90 61-172 35-128 (201)
131 PRK05654 acetyl-CoA carboxylas 96.8 0.029 6.4E-07 53.6 13.7 158 43-240 117-278 (292)
132 PRK11778 putative inner membra 96.8 0.005 1.1E-07 59.7 8.5 103 45-168 89-191 (330)
133 TIGR03134 malonate_gamma malon 96.4 0.11 2.3E-06 48.4 14.3 163 39-230 24-191 (238)
134 COG1030 NfeD Membrane-bound se 96.3 0.023 4.9E-07 56.7 9.3 148 45-228 25-188 (436)
135 TIGR00705 SppA_67K signal pept 96.2 0.023 4.9E-07 59.7 9.4 84 66-166 77-160 (584)
136 COG0740 ClpP Protease subunit 96.1 0.025 5.3E-07 50.9 7.5 45 122-166 76-122 (200)
137 PF01039 Carboxyl_trans: Carbo 95.9 0.059 1.3E-06 55.4 10.6 107 48-167 59-168 (493)
138 PRK10949 protease 4; Provision 95.3 0.08 1.7E-06 55.8 9.2 85 66-167 96-180 (618)
139 COG0825 AccA Acetyl-CoA carbox 95.3 0.011 2.3E-07 55.7 2.3 92 118-228 175-266 (317)
140 COG0777 AccD Acetyl-CoA carbox 95.2 0.66 1.4E-05 43.6 13.6 176 26-241 102-280 (294)
141 TIGR01117 mmdA methylmalonyl-C 94.8 0.31 6.7E-06 50.4 11.8 111 43-166 311-427 (512)
142 TIGR01117 mmdA methylmalonyl-C 94.4 0.19 4.1E-06 51.9 9.0 106 48-166 84-190 (512)
143 PLN02820 3-methylcrotonyl-CoA 94.3 0.37 8.1E-06 50.3 10.9 113 45-166 127-241 (569)
144 COG4799 Acetyl-CoA carboxylase 94.0 0.22 4.8E-06 51.1 8.4 101 49-162 94-194 (526)
145 PRK12552 ATP-dependent Clp pro 93.2 0.5 1.1E-05 43.4 8.4 97 61-170 48-148 (222)
146 PF01343 Peptidase_S49: Peptid 92.7 0.062 1.3E-06 46.4 1.7 41 127-167 2-42 (154)
147 PF01039 Carboxyl_trans: Carbo 90.9 1.1 2.4E-05 46.2 8.8 115 40-166 287-406 (493)
148 PLN02820 3-methylcrotonyl-CoA 83.3 20 0.00044 37.6 12.8 95 60-166 380-478 (569)
149 COG4799 Acetyl-CoA carboxylase 78.3 27 0.00059 36.2 11.4 114 41-166 318-436 (526)
150 PF02601 Exonuc_VII_L: Exonucl 75.4 7.6 0.00017 37.4 6.4 59 63-138 53-114 (319)
151 KOG0840|consensus 69.2 13 0.00028 34.8 6.0 141 61-228 100-257 (275)
152 TIGR00237 xseA exodeoxyribonuc 68.4 12 0.00026 37.9 6.2 80 63-161 168-247 (432)
153 COG1570 XseA Exonuclease VII, 66.9 12 0.00026 37.8 5.7 58 64-138 175-232 (440)
154 COG0074 SucD Succinyl-CoA synt 66.1 20 0.00044 34.1 6.7 73 45-143 145-240 (293)
155 KOG0540|consensus 63.4 68 0.0015 32.6 10.0 105 51-167 353-461 (536)
156 PTZ00187 succinyl-CoA syntheta 59.6 28 0.00061 33.8 6.6 54 69-143 211-264 (317)
157 PRK00286 xseA exodeoxyribonucl 54.7 27 0.00058 35.3 5.9 57 63-138 174-231 (438)
158 PLN02522 ATP citrate (pro-S)-l 54.4 38 0.00082 35.9 7.0 53 69-143 209-262 (608)
159 PF13607 Succ_CoA_lig: Succiny 51.0 38 0.00082 28.6 5.4 52 69-142 41-92 (138)
160 PF00549 Ligase_CoA: CoA-ligas 39.5 65 0.0014 27.8 5.1 61 69-143 60-120 (153)
161 PLN00125 Succinyl-CoA ligase [ 34.0 1E+02 0.0022 29.7 6.0 54 69-143 192-245 (300)
162 cd01129 PulE-GspE PulE/GspE Th 33.3 2.6E+02 0.0057 26.1 8.6 85 3-91 1-88 (264)
163 PF06833 MdcE: Malonate decarb 29.4 53 0.0011 30.5 3.0 91 59-161 40-136 (234)
164 PF08104 Antimicrobial_9: Pone 29.2 11 0.00024 21.2 -0.9 11 344-354 1-11 (24)
165 PRK06091 membrane protein FdrA 27.3 1.7E+02 0.0037 30.7 6.6 53 69-143 239-291 (555)
166 COG1105 FruK Fructose-1-phosph 26.9 4.5E+02 0.0097 25.5 9.0 72 48-144 101-172 (310)
167 PRK13505 formate--tetrahydrofo 26.3 1.4E+02 0.003 31.4 5.7 56 96-151 337-392 (557)
168 COG0793 Prc Periplasmic protea 26.2 16 0.00035 36.7 -1.0 92 48-146 205-302 (406)
169 smart00870 Asparaginase Aspara 25.4 2.4E+02 0.0053 27.2 7.1 31 60-90 55-85 (323)
170 PF12268 DUF3612: Protein of u 24.6 56 0.0012 28.1 2.1 25 81-106 78-102 (178)
171 COG0252 AnsB L-asparaginase/ar 24.1 3.2E+02 0.0069 27.0 7.6 38 51-90 71-108 (351)
172 COG0047 PurL Phosphoribosylfor 22.1 2.8E+02 0.0061 25.7 6.3 83 46-143 3-93 (231)
173 KOG1255|consensus 21.8 2.2E+02 0.0048 26.7 5.5 56 69-142 218-273 (329)
174 TIGR00520 asnASE_II L-asparagi 21.7 2.4E+02 0.0052 27.8 6.2 42 48-90 72-113 (349)
175 TIGR01019 sucCoAalpha succinyl 21.6 2.2E+02 0.0048 27.1 5.8 23 69-91 185-207 (286)
176 TIGR02153 gatD_arch glutamyl-t 20.8 3.2E+02 0.0069 27.5 7.0 32 60-91 118-149 (404)
177 TIGR02717 AcCoA-syn-alpha acet 20.6 79 0.0017 32.1 2.7 54 68-143 189-242 (447)
178 PRK05368 homoserine O-succinyl 20.3 3.9E+02 0.0085 25.7 7.3 67 61-141 79-145 (302)
No 1
>KOG1680|consensus
Probab=100.00 E-value=7.4e-44 Score=325.07 Aligned_cols=189 Identities=33% Similarity=0.491 Sum_probs=168.2
Q ss_pred CCCcceeEEEEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC
Q psy504 30 EGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN 109 (358)
Q Consensus 30 ~~~~~~~~~~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~ 109 (358)
+.+..++....+...+++|+.|+||||+++|+|+..|+.||.+++..++.|+++.++||||. |+.||+|.|++++....
T Consensus 29 ~~~~~~~~~~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~-gksFcsG~Dl~e~~~~~ 107 (290)
T KOG1680|consen 29 TDQEFEPIKIELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGS-GKSFCSGADLKEMKKDE 107 (290)
T ss_pred hccccCcceeEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcC-CCccccccCHHHHhhcc
Confidence 44556677777788899999999999999999999999999999999999999999999999 89999999999987643
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccch
Q psy504 110 EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI 189 (358)
Q Consensus 110 ~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~ 189 (358)
.++.. ...+.+.+..+.+.+||+||+|||+|+|||+||+++||+|||+++|+|++|+.++|++|.+|++++|+|.+|.
T Consensus 108 ~~~~~--~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~ 185 (290)
T KOG1680|consen 108 FQDVS--DGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGK 185 (290)
T ss_pred ccccc--cccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhCh
Confidence 33211 1112233444558999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504 190 PLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS 230 (358)
Q Consensus 190 ~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~ 230 (358)
++|++++ +||++++| ++|.++|||++|++..+
T Consensus 186 s~Ale~~--ltg~~~~A-------qeA~~~GlVn~Vvp~~~ 217 (290)
T KOG1680|consen 186 SRALEMI--LTGRRLGA-------QEAKKIGLVNKVVPSGD 217 (290)
T ss_pred HHHHHHH--HhcCcccH-------HHHHhCCceeEeecchh
Confidence 9999999 99999999 99999999999998765
No 2
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.1e-43 Score=326.75 Aligned_cols=208 Identities=26% Similarity=0.424 Sum_probs=174.1
Q ss_pred eeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHH
Q psy504 41 NSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTL 120 (358)
Q Consensus 41 l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~ 120 (358)
+++.+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|+++||+|.|++++..........+...+
T Consensus 10 ~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 89 (256)
T PRK06143 10 VTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRL 89 (256)
T ss_pred eeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHH
Confidence 34457899999999999999999999999999999999999999999999944799999999987654333344555667
Q ss_pred HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhc
Q psy504 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLN 200 (358)
Q Consensus 121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~lt 200 (358)
+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|+ |++|++++|++++|..+|++++ ++
T Consensus 90 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l~--l~ 166 (256)
T PRK06143 90 RDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRWLL--LT 166 (256)
T ss_pred HHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHHHH--Hc
Confidence 78889999999999999999999999999999999999999999999999997 8888899999999999999999 99
Q ss_pred ccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecccccc
Q psy504 201 NDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLN 258 (358)
Q Consensus 201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~ 258 (358)
|++++| ++|+++|||+++++..+.......+.......++......|++++
T Consensus 167 g~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~ 217 (256)
T PRK06143 167 GETIDA-------AQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALRQQKRLLR 217 (256)
T ss_pred CCcCCH-------HHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999 999999999999986544434433333323333333333344443
No 3
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=1.1e-42 Score=324.90 Aligned_cols=178 Identities=43% Similarity=0.706 Sum_probs=163.8
Q ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHH
Q psy504 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (358)
Q Consensus 45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (358)
+++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.++++||+|.|++++..........+...++.++
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTF 81 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999998678999999999876543333444556667788
Q ss_pred HHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccccc
Q psy504 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCM 204 (358)
Q Consensus 125 ~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i 204 (358)
.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+ |||+++
T Consensus 82 ~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~--ltg~~~ 159 (251)
T PLN02600 82 SSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELI--FTGRRI 159 (251)
T ss_pred HHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHH--HhCCcc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ccccccccchhhHhcCCceEEEecCCc
Q psy504 205 SSLDTRYMWCTPYRRGLVVTLVIKFSQ 231 (358)
Q Consensus 205 ~a~~d~~mw~ea~~~GLv~~vv~~~~~ 231 (358)
++ ++|+++|||+++++..+.
T Consensus 160 ~a-------~eA~~~Glv~~vv~~~~~ 179 (251)
T PLN02600 160 GA-------REAASMGLVNYCVPAGEA 179 (251)
T ss_pred CH-------HHHHHcCCCcEeeChhHH
Confidence 99 999999999999976543
No 4
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-42 Score=324.87 Aligned_cols=183 Identities=36% Similarity=0.506 Sum_probs=163.9
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC----HHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQIRSFVS 118 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~----~~~~~~~~~ 118 (358)
+.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|+++||+|.|++++.... ......+..
T Consensus 8 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 87 (260)
T PRK05980 8 EIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVR 87 (260)
T ss_pred EEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHH
Confidence 3579999999999999999999999999999999999999999999999447999999999875421 112334555
Q ss_pred HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504 119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL 198 (358)
Q Consensus 119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ 198 (358)
..+.++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++
T Consensus 88 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~-- 165 (260)
T PRK05980 88 RGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELL-- 165 (260)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHH--
Confidence 566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccccccchhhHhcCCceEEEecCCccHH
Q psy504 199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVH 234 (358)
Q Consensus 199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~ 234 (358)
++|++++| ++|+++|||+++++..+....
T Consensus 166 l~g~~~~a-------~eA~~~Glv~~vv~~~~l~~~ 194 (260)
T PRK05980 166 LTGDAFSA-------ERALEIGLVNAVVPHEELLPA 194 (260)
T ss_pred HcCCccCH-------HHHHHcCCCCcccCHHHHHHH
Confidence 99999999 999999999999976443333
No 5
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-42 Score=324.14 Aligned_cols=205 Identities=29% Similarity=0.354 Sum_probs=171.9
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 122 (358)
+.+++|++||||||++ |++|.+|+.+|.++++.++.|+++|+|||||.|+++||+|.|++++..........+...+..
T Consensus 8 ~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 86 (258)
T PRK09076 8 EIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGE 86 (258)
T ss_pred EEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHH
Confidence 4578999999999985 999999999999999999999999999999995589999999998754333323344455667
Q ss_pred HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND 202 (358)
Q Consensus 123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~ 202 (358)
++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++ |+|+
T Consensus 87 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~--l~g~ 164 (258)
T PRK09076 87 AFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMI--LCGE 164 (258)
T ss_pred HHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHH--HcCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504 203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL 257 (358)
Q Consensus 203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~ 257 (358)
+++| ++|+++|||+++++..+......++.......++......|+++
T Consensus 165 ~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 212 (258)
T PRK09076 165 RVDA-------ATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVAACKTLI 212 (258)
T ss_pred cCCH-------HHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999 99999999999998755444433333322333333333334333
No 6
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.7e-42 Score=323.03 Aligned_cols=186 Identities=42% Similarity=0.665 Sum_probs=167.0
Q ss_pred ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (358)
Q Consensus 44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l 123 (358)
.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|+++||+|.|++++..........+...++.+
T Consensus 10 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 89 (260)
T PRK07657 10 VTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTT 89 (260)
T ss_pred ccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999944699999999987654433444555667788
Q ss_pred HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccc
Q psy504 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDC 203 (358)
Q Consensus 124 ~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~ 203 (358)
+..+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++ ++|++
T Consensus 90 ~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~--l~g~~ 167 (260)
T PRK07657 90 MEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELI--YTGRR 167 (260)
T ss_pred HHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHH--HhCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504 204 MSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL 238 (358)
Q Consensus 204 i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l 238 (358)
+++ ++|+++|||+++++..+.......+
T Consensus 168 ~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~ 195 (260)
T PRK07657 168 ISA-------QEAKEIGLVEFVVPAHLLEEKAIEI 195 (260)
T ss_pred CCH-------HHHHHcCCCCeecCHHHHHHHHHHH
Confidence 999 9999999999999765433333333
No 7
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=2.9e-42 Score=326.12 Aligned_cols=186 Identities=26% Similarity=0.406 Sum_probs=164.1
Q ss_pred ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH---H-HHHHHHHH
Q psy504 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE---D-QIRSFVST 119 (358)
Q Consensus 44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~---~-~~~~~~~~ 119 (358)
.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++..... . ........
T Consensus 14 ~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 92 (275)
T PRK09120 14 VEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGA-GDAWSAGMDLKEYFRETDAQPEILQERIRRE 92 (275)
T ss_pred EECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcC-CCceecCcCHHHHhhccccchhHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999 789999999998643211 1 12223334
Q ss_pred HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL 199 (358)
Q Consensus 120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l 199 (358)
.+.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+ |
T Consensus 93 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ll--l 170 (275)
T PRK09120 93 AYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYI--M 170 (275)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHH--h
Confidence 56678889999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cccccccccccccchhhHhcCCceEEEecCCccHHHHHHH
Q psy504 200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALI 239 (358)
Q Consensus 200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~ 239 (358)
+|++++| ++|+++|||+++++..+.......+.
T Consensus 171 tg~~~~A-------~eA~~~Glv~~vv~~~~l~~~a~~~a 203 (275)
T PRK09120 171 TGETFTG-------RKAAEMGLVNESVPLAQLRARTRELA 203 (275)
T ss_pred cCCccCH-------HHHHHcCCcceecCHHHHHHHHHHHH
Confidence 9999999 99999999999998755444444443
No 8
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.7e-42 Score=320.83 Aligned_cols=181 Identities=31% Similarity=0.422 Sum_probs=162.1
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 122 (358)
+.+++|++|+||||++.|+||.+|+.+|.++++.++ +++|+|||||. |++||+|.|++++..............++.
T Consensus 7 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 83 (255)
T PRK08150 7 ELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGE-GDHFCAGLDLSELRERDAGEGMHHSRRWHR 83 (255)
T ss_pred EeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHHH
Confidence 347899999999999999999999999999999987 78999999999 789999999998765332222334455677
Q ss_pred HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND 202 (358)
Q Consensus 123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~ 202 (358)
++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++ |+|+
T Consensus 84 ~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~--ltg~ 161 (255)
T PRK08150 84 VFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMM--LTGR 161 (255)
T ss_pred HHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHH--HcCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccccccccccchhhHhcCCceEEEecCCccHHH
Q psy504 203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHI 235 (358)
Q Consensus 203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~ 235 (358)
+++| ++|+++|||+++++..+.....
T Consensus 162 ~~~a-------~eA~~~Glv~~vv~~~~l~~~a 187 (255)
T PRK08150 162 VYDA-------QEGERLGLAQYLVPAGEALDKA 187 (255)
T ss_pred cCCH-------HHHHHcCCccEeeCchHHHHHH
Confidence 9999 9999999999999865543333
No 9
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.1e-42 Score=324.07 Aligned_cols=206 Identities=23% Similarity=0.303 Sum_probs=171.4
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC-----------HH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-----------ED 111 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~-----------~~ 111 (358)
+.+++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||. |++||+|.|++++.... ..
T Consensus 11 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 89 (272)
T PRK06142 11 ELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGS-GKHFSYGIDLPAMAGVFGQLGKDGLARPRT 89 (272)
T ss_pred EecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhhhcccccccccccchH
Confidence 3478999999999999999999999999999999999999999999998 78999999999874311 11
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhh
Q psy504 112 QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPL 191 (358)
Q Consensus 112 ~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~ 191 (358)
........+.+++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus 90 ~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~ 169 (272)
T PRK06142 90 DLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGH 169 (272)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHH
Confidence 22233445677888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhcccccccccccccchhhHhcCCceEEEec-CCccHHHHHHHHhhhccccccceecccccc
Q psy504 192 AALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIK-FSQPVHISALIVWNYNASIEMSYCGFSLLN 258 (358)
Q Consensus 192 A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~-~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~ 258 (358)
|++|+ ++|++++| ++|+++|||+++++. .+.......+.......++......|.+++
T Consensus 170 a~~l~--l~g~~~~a-------~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~ 228 (272)
T PRK06142 170 LRELA--LTGRDIDA-------AEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVRGTKEVLD 228 (272)
T ss_pred HHHHH--HhCCCcCH-------HHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999 99999999 999999999999975 332233333332223334444444444443
No 10
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=7.9e-42 Score=323.26 Aligned_cols=205 Identities=27% Similarity=0.387 Sum_probs=171.2
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-----------H
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-----------D 111 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-----------~ 111 (358)
+.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++..... +
T Consensus 13 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 91 (275)
T PLN02664 13 SPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGA-GDHFCSGIDLKTLNSISEQSSSGDRGRSGE 91 (275)
T ss_pred cCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECC-CCceeeCcChHHhhhcccccccccchhhHH
Confidence 3478999999999999999999999999999999999999999999999 789999999998754210 1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhh
Q psy504 112 QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPL 191 (358)
Q Consensus 112 ~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~ 191 (358)
....+...+++++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus 92 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 171 (275)
T PLN02664 92 RLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGN 171 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHH
Confidence 12233445567888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhcccccccccccccchhhHhcCCceEEEec-CCccHHHHHHHHhhhccccccceeccccc
Q psy504 192 AALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIK-FSQPVHISALIVWNYNASIEMSYCGFSLL 257 (358)
Q Consensus 192 A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~-~~~~~~~~~l~~~n~~~~~e~~~~gk~L~ 257 (358)
|++++ |||++++| ++|+++|||+++++. .+.......+.......++......|.++
T Consensus 172 A~~l~--ltg~~~~a-------~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~~~K~~l 229 (275)
T PLN02664 172 AMELA--LTGRRFSG-------SEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTKAVL 229 (275)
T ss_pred HHHHH--HhCCCCCH-------HHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999 99999999 999999999999974 33333333333333334444444444443
No 11
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-41 Score=321.08 Aligned_cols=182 Identities=27% Similarity=0.346 Sum_probs=163.1
Q ss_pred EeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC--HHHHHHHH
Q psy504 40 HNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN--EDQIRSFV 117 (358)
Q Consensus 40 ~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~--~~~~~~~~ 117 (358)
.++..+++|++|+||||++.|+++.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++.... ........
T Consensus 14 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 92 (268)
T PRK07327 14 RFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGE-GKAFSAGGDLALVEEMADDFEVRARVW 92 (268)
T ss_pred EEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECC-CCCcccccCHHHHhhccCcHHHHHHHH
Confidence 3333367899999999999999999999999999999999999999999999 68999999999875422 12233344
Q ss_pred HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhh
Q psy504 118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYED 197 (358)
Q Consensus 118 ~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~ 197 (358)
.....++..+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++
T Consensus 93 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~- 171 (268)
T PRK07327 93 REARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYL- 171 (268)
T ss_pred HHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHH-
Confidence 5566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccccccchhhHhcCCceEEEecCCc
Q psy504 198 LLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ 231 (358)
Q Consensus 198 ~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~ 231 (358)
|||++++| ++|+++|||+++++..+.
T Consensus 172 -ltg~~~~a-------~eA~~~Glv~~vv~~~~l 197 (268)
T PRK07327 172 -LLCEPVSG-------EEAERIGLVSLAVDDDEL 197 (268)
T ss_pred -HcCCccCH-------HHHHHcCCcceecCHHHH
Confidence 99999999 999999999999976443
No 12
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.9e-42 Score=322.28 Aligned_cols=186 Identities=24% Similarity=0.413 Sum_probs=165.3
Q ss_pred ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc--CHHHHHHHHHHHH
Q psy504 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL--NEDQIRSFVSTLR 121 (358)
Q Consensus 44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~--~~~~~~~~~~~~~ 121 (358)
.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++... ..+....+.....
T Consensus 17 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 96 (269)
T PRK06127 17 KTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVE 96 (269)
T ss_pred EECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999955899999999987542 1222234445566
Q ss_pred HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN 201 (358)
Q Consensus 122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg 201 (358)
.++..+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++ |+|
T Consensus 97 ~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--ltg 174 (269)
T PRK06127 97 AAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLF--YTA 174 (269)
T ss_pred HHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHH--HcC
Confidence 788899999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred cccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504 202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL 238 (358)
Q Consensus 202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l 238 (358)
++++| ++|+++|||+++++..+......++
T Consensus 175 ~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~ 204 (269)
T PRK06127 175 RRFDA-------AEALRIGLVHRVTAADDLETALADY 204 (269)
T ss_pred CCCCH-------HHHHHcCCCCEeeCHHHHHHHHHHH
Confidence 99999 9999999999999865443333333
No 13
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=8.1e-42 Score=320.01 Aligned_cols=185 Identities=23% Similarity=0.343 Sum_probs=162.1
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 122 (358)
+.+++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++..... ....+...+..
T Consensus 7 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~ 85 (256)
T TIGR03210 7 EKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-GRGTIGLPMEE 85 (256)
T ss_pred EeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-chhHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999995589999999998743211 11122234566
Q ss_pred HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND 202 (358)
Q Consensus 123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~ 202 (358)
++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|++++ ++|+
T Consensus 86 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~ll--l~g~ 163 (256)
T TIGR03210 86 LHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIW--YLCR 163 (256)
T ss_pred HHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHH--HhCC
Confidence 88899999999999999999999999999999999999999999999999998888889999999999999999 9999
Q ss_pred ccccccccccchhhHhcCCceEEEecCCccHHHHH
Q psy504 203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISA 237 (358)
Q Consensus 203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~ 237 (358)
+++| ++|+++|||+++++..+......+
T Consensus 164 ~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~ 191 (256)
T TIGR03210 164 RYTA-------QEALAMGLVNAVVPHDQLDAEVQK 191 (256)
T ss_pred CcCH-------HHHHHcCCceeeeCHHHHHHHHHH
Confidence 9999 999999999999986543333333
No 14
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-41 Score=322.04 Aligned_cols=188 Identities=27% Similarity=0.320 Sum_probs=164.2
Q ss_pred cceeEEEEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC---
Q psy504 33 KLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN--- 109 (358)
Q Consensus 33 ~~~~~~~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~--- 109 (358)
.++...+.++..+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++....
T Consensus 5 ~~~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~ 83 (276)
T PRK05864 5 RSTMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGA-GRGFSSGADHKSAGVVPHVE 83 (276)
T ss_pred CCCCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcchhhhhcccccc
Confidence 33444455554478999999999999999999999999999999999999999999998 78999999999864211
Q ss_pred ----HHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceeccccc-Ccccccccc
Q psy504 110 ----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIP-GAGGTQRLP 184 (358)
Q Consensus 110 ----~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p-~~g~s~~L~ 184 (358)
..........+++++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~ 163 (276)
T PRK05864 84 GLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLP 163 (276)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehH
Confidence 111112334556778889999999999999999999999999999999999999999999999997 788899999
Q ss_pred cccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504 185 RIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS 230 (358)
Q Consensus 185 r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~ 230 (358)
+++|..+|++++ |+|++++| ++|+++|||+++++..+
T Consensus 164 ~~vG~~~A~~l~--l~g~~~~a-------~eA~~~Glv~~vv~~~~ 200 (276)
T PRK05864 164 RAIGSSRAFEIM--LTGRDVDA-------EEAERIGLVSRQVPDEQ 200 (276)
T ss_pred hhhCHHHHHHHH--HcCCccCH-------HHHHHcCCcceeeCHHH
Confidence 999999999999 99999999 99999999999997644
No 15
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=8.4e-42 Score=319.73 Aligned_cols=178 Identities=33% Similarity=0.516 Sum_probs=161.1
Q ss_pred eeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHH
Q psy504 42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLR 121 (358)
Q Consensus 42 ~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~ 121 (358)
++.+++|++||||||++.|++|.+|+.+|.++++.+++|+++|+|||||. |++||+|.|++++...... ..+.....
T Consensus 6 ~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~--~~~~~~~~ 82 (255)
T PRK09674 6 VSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGN-ARFFAAGADLNEMAEKDLA--ATLNDPRP 82 (255)
T ss_pred EEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECC-CCceecccChHhHhccchh--hhHHHHHH
Confidence 34578999999999999999999999999999999999999999999998 7999999999987543211 12223445
Q ss_pred HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN 201 (358)
Q Consensus 122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg 201 (358)
.++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++ ++|
T Consensus 83 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~--l~g 160 (255)
T PRK09674 83 QLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMV--LTG 160 (255)
T ss_pred HHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHH--HcC
Confidence 678889999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred cccccccccccchhhHhcCCceEEEecCCc
Q psy504 202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ 231 (358)
Q Consensus 202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~ 231 (358)
+.+++ ++|+++|||+++++..+.
T Consensus 161 ~~~~a-------~eA~~~Glv~~vv~~~~~ 183 (255)
T PRK09674 161 ESITA-------QQAQQAGLVSEVFPPELT 183 (255)
T ss_pred CccCH-------HHHHHcCCCcEecChHHH
Confidence 99999 999999999999976543
No 16
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.7e-42 Score=320.89 Aligned_cols=178 Identities=26% Similarity=0.352 Sum_probs=156.8
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 122 (358)
+.+++|++||||||++.|++|.+|+.+|.+++++++.|+++|+|||||. |++||+|.|++++..........+.....+
T Consensus 4 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 82 (255)
T PRK06563 4 ERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAH-GEHFTAGLDLADVAPKLAAGGFPFPEGGID 82 (255)
T ss_pred EEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECC-CCCCcCCcCHHHHhhccccchhhhhhhhhH
Confidence 4578999999999999999999999999999999999999999999998 789999999998754221111122222222
Q ss_pred -HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504 123 -MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN 201 (358)
Q Consensus 123 -l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg 201 (358)
+...+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++ +||
T Consensus 83 ~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--ltg 160 (255)
T PRK06563 83 PWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYL--LTG 160 (255)
T ss_pred HHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHH--HcC
Confidence 33358899999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred cccccccccccchhhHhcCCceEEEecCC
Q psy504 202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFS 230 (358)
Q Consensus 202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~ 230 (358)
+++++ ++|+++|||+++++..+
T Consensus 161 ~~~~a-------~eA~~~Glv~~vv~~~~ 182 (255)
T PRK06563 161 DEFDA-------QEALRLGLVQEVVPPGE 182 (255)
T ss_pred CCcCH-------HHHHHcCCCcEeeCHHH
Confidence 99999 99999999999997644
No 17
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=1.1e-41 Score=319.06 Aligned_cols=184 Identities=30% Similarity=0.463 Sum_probs=161.6
Q ss_pred eeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH--HH-HHHHHH
Q psy504 42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE--DQ-IRSFVS 118 (358)
Q Consensus 42 ~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~--~~-~~~~~~ 118 (358)
++.+++|++||||||++.|++|.+|+.+|.++++.+++|+ +|+|||||. |++||+|.|++++..... .+ ...+..
T Consensus 3 ~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 80 (256)
T TIGR02280 3 SALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGA-GRGFCAGQDLSERNPTPGGAPDLGRTIET 80 (256)
T ss_pred EEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECC-CCCcccCcCHHHHhhccccchhHHHHHHH
Confidence 4557999999999999999999999999999999999998 999999999 789999999998754211 11 112222
Q ss_pred HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504 119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL 198 (358)
Q Consensus 119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ 198 (358)
.+..++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+
T Consensus 81 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~-- 158 (256)
T TIGR02280 81 FYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLA-- 158 (256)
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHH--
Confidence 345577889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccccccchhhHhcCCceEEEecCCccHHHH
Q psy504 199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHIS 236 (358)
Q Consensus 199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~ 236 (358)
++|+++++ ++|+++|||+++++..+......
T Consensus 159 l~g~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~ 189 (256)
T TIGR02280 159 MLGEKLDA-------RTAASWGLIWQVVDDAALMDEAQ 189 (256)
T ss_pred HcCCCCCH-------HHHHHcCCcceeeChHHHHHHHH
Confidence 99999999 99999999999998654333333
No 18
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.8e-42 Score=319.64 Aligned_cols=177 Identities=34% Similarity=0.493 Sum_probs=160.2
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 122 (358)
+++++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++...... ..+...+..
T Consensus 9 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~--~~~~~~~~~ 85 (257)
T PRK05862 9 ETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGS-EKAFAAGADIKEMADLSFM--DVYKGDYIT 85 (257)
T ss_pred EeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECC-CCceECCcChHhHhccchh--HHHHHHHHH
Confidence 3478999999999999999999999999999999999999999999998 7899999999987643321 122233445
Q ss_pred HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND 202 (358)
Q Consensus 123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~ 202 (358)
++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+ ++|+
T Consensus 86 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--l~g~ 163 (257)
T PRK05862 86 NWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLC--LTGR 163 (257)
T ss_pred HHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHH--HhCC
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccccccccccchhhHhcCCceEEEecCCc
Q psy504 203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQ 231 (358)
Q Consensus 203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~ 231 (358)
+++| ++|+++|||+++++..+.
T Consensus 164 ~~~a-------~eA~~~Glv~~vv~~~~l 185 (257)
T PRK05862 164 MMDA-------AEAERAGLVSRVVPADKL 185 (257)
T ss_pred ccCH-------HHHHHcCCCCEeeCHhHH
Confidence 9999 999999999999986443
No 19
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=9.9e-42 Score=312.90 Aligned_cols=176 Identities=27% Similarity=0.429 Sum_probs=161.0
Q ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHH
Q psy504 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (358)
Q Consensus 45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (358)
+++|++|+||||++ |+||.+|+.+|.+++++++.|+++|+|||||. |++||+|+|++++......+.....+.+++++
T Consensus 15 ~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 92 (222)
T PRK05869 15 DAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGG-HEIFSAGDDMPELRTLSAQEADTAARVRQQAV 92 (222)
T ss_pred cCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCcCcCcCHHHHhccChhhHHHHHHHHHHHH
Confidence 68999999999985 99999999999999999999999999999998 78999999999876543333333445567788
Q ss_pred HHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccccc
Q psy504 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCM 204 (358)
Q Consensus 125 ~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i 204 (358)
.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++.+|++++|..+|++++ ++|+++
T Consensus 93 ~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~--ltg~~~ 170 (222)
T PRK05869 93 DAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELV--FSGRFF 170 (222)
T ss_pred HHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHH--HcCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ccccccccchhhHhcCCceEEEecCCc
Q psy504 205 SSLDTRYMWCTPYRRGLVVTLVIKFSQ 231 (358)
Q Consensus 205 ~a~~d~~mw~ea~~~GLv~~vv~~~~~ 231 (358)
+| ++|+++||++++++..+.
T Consensus 171 ~a-------~eA~~~Glv~~vv~~~~l 190 (222)
T PRK05869 171 DA-------EEALALGLIDEMVAPDDV 190 (222)
T ss_pred CH-------HHHHHCCCCCEeeCchHH
Confidence 99 999999999999976543
No 20
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-41 Score=318.59 Aligned_cols=202 Identities=29% Similarity=0.400 Sum_probs=169.8
Q ss_pred ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (358)
Q Consensus 44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l 123 (358)
.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++........ . ...++.+
T Consensus 10 ~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~-~-~~~~~~~ 86 (258)
T PRK06190 10 THDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGA-DPAFCAGLDLKELGGDGSAYG-A-QDALPNP 86 (258)
T ss_pred eeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCCccCCcCHHHHhcccchhh-H-HHHHHHH
Confidence 478999999999999999999999999999999999999999999999 899999999998764322211 1 2345678
Q ss_pred HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccc
Q psy504 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDC 203 (358)
Q Consensus 124 ~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~ 203 (358)
+.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++ ++|++
T Consensus 87 ~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~--ltg~~ 164 (258)
T PRK06190 87 SPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMS--LTGDF 164 (258)
T ss_pred HHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHH--HhCCc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504 204 MSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL 257 (358)
Q Consensus 204 i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~ 257 (358)
++| ++|+++|||+++++..+......++.......++......|+++
T Consensus 165 ~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 211 (258)
T PRK06190 165 LDA-------ADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVRALKASY 211 (258)
T ss_pred cCH-------HHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999 99999999999997644333333333332333333333333333
No 21
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.4e-42 Score=318.33 Aligned_cols=174 Identities=28% Similarity=0.413 Sum_probs=159.1
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 122 (358)
+.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++..............+.+
T Consensus 8 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 86 (249)
T PRK05870 8 DVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGA-GKAFCAGADLTALGAAPGRPAEDGLRRIYD 86 (249)
T ss_pred EccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCCeecCcChHHHhcccccchHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999 789999999998765322112233455566
Q ss_pred HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND 202 (358)
Q Consensus 123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~ 202 (358)
++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++ +||+
T Consensus 87 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~--ltg~ 164 (249)
T PRK05870 87 GFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAAL--LFGM 164 (249)
T ss_pred HHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHH--HhCC
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccccccccccchhhHhcCCceEEE
Q psy504 203 CMSSLDTRYMWCTPYRRGLVVTLV 226 (358)
Q Consensus 203 ~i~a~~d~~mw~ea~~~GLv~~vv 226 (358)
+++| ++|+++|||++++
T Consensus 165 ~~~a-------~eA~~~Glv~~vv 181 (249)
T PRK05870 165 RFDA-------EAAVRHGLALMVA 181 (249)
T ss_pred ccCH-------HHHHHcCCHHHHH
Confidence 9999 9999999999998
No 22
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-41 Score=319.78 Aligned_cols=205 Identities=31% Similarity=0.455 Sum_probs=169.7
Q ss_pred eecCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC------HHHH-H
Q psy504 43 PERPGIVELCMNRPQARNALNA-TLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN------EDQI-R 114 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~-~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~------~~~~-~ 114 (358)
+.+++|++||||||++.|++|. +|+.+|.++++.++.|+++|+|||+|. |++||+|.|++++.... .... .
T Consensus 8 ~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 86 (266)
T PRK09245 8 ERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGA-GTAFSSGGNVKDMRARVGAFGGSPADIRQ 86 (266)
T ss_pred EEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCHHHHhhccccccccchhHHH
Confidence 3478999999999999999995 999999999999999999999999998 79999999999875321 1111 2
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHh
Q psy504 115 SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAAL 194 (358)
Q Consensus 115 ~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ 194 (358)
.+...+..++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus 87 ~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~ 166 (266)
T PRK09245 87 GYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAE 166 (266)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHH
Confidence 23334566788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504 195 YEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL 257 (358)
Q Consensus 195 ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~ 257 (358)
++ ++|++++| ++|+++|||+++++..+......++.......++......|.++
T Consensus 167 l~--l~g~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 220 (266)
T PRK09245 167 MA--FTGDAIDA-------ATALEWGLVSRVVPADQLLPAARALAERIAANPPHALRLTKRLL 220 (266)
T ss_pred HH--HcCCCcCH-------HHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99 99999999 99999999999997654333333333332333333333334333
No 23
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.4e-41 Score=317.86 Aligned_cols=182 Identities=26% Similarity=0.426 Sum_probs=163.3
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-HHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTLR 121 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-~~~~~~~~~~~ 121 (358)
+.+++|++|+||||+++|+||.+|+.+|.+++++++.|+++++|||||.|+++||+|+|++++..... +....+...+.
T Consensus 13 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 92 (262)
T PRK06144 13 EVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRID 92 (262)
T ss_pred EeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999995579999999998754322 22223445567
Q ss_pred HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeeccee-cccccCcccccccccccchhhHHhhhhhhc
Q psy504 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK-LAIIPGAGGTQRLPRIVGIPLAALYEDLLN 200 (358)
Q Consensus 122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~-lGl~p~~g~s~~L~r~iG~~~A~~ll~~lt 200 (358)
+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++|..+|++++ ++
T Consensus 93 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~--l~ 170 (262)
T PRK06144 93 RVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDML--FT 170 (262)
T ss_pred HHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHH--Hc
Confidence 7888999999999999999999999999999999999999999999996 99999999999999999999999999 99
Q ss_pred ccccccccccccchhhHhcCCceEEEecCCccH
Q psy504 201 NDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPV 233 (358)
Q Consensus 201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~ 233 (358)
|++++| ++|+++|||+++++..+...
T Consensus 171 g~~~~a-------~eA~~~Glv~~vv~~~~l~~ 196 (262)
T PRK06144 171 ARLLEA-------EEALAAGLVNEVVEDAALDA 196 (262)
T ss_pred CCCcCH-------HHHHHcCCcCeecCHHHHHH
Confidence 999999 99999999999998744333
No 24
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-41 Score=318.26 Aligned_cols=177 Identities=33% Similarity=0.489 Sum_probs=161.4
Q ss_pred eeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHH
Q psy504 42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLR 121 (358)
Q Consensus 42 ~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~ 121 (358)
+..+++|++|+||||+++|++|.+|+.+|.++++.+++|+++|+|||||. |++||+|.|++++..... ...+....+
T Consensus 12 ~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~--~~~~~~~~~ 88 (261)
T PRK08138 12 ERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGG-EKVFAAGADIKEFATAGA--IEMYLRHTE 88 (261)
T ss_pred EEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECC-CCCeeCCcCHHHHhccch--hHHHHHHHH
Confidence 33478999999999999999999999999999999999999999999998 789999999998754322 123334556
Q ss_pred HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN 201 (358)
Q Consensus 122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg 201 (358)
+++..+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+ |+|
T Consensus 89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--l~g 166 (261)
T PRK08138 89 RYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMA--LTG 166 (261)
T ss_pred HHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHH--HcC
Confidence 788899999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred cccccccccccchhhHhcCCceEEEecCC
Q psy504 202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFS 230 (358)
Q Consensus 202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~ 230 (358)
+++++ ++|+++|||+++++..+
T Consensus 167 ~~~~a-------~eA~~~Glv~~vv~~~~ 188 (261)
T PRK08138 167 CMVPA-------PEALAIGLVSEVVEDEQ 188 (261)
T ss_pred CCCCH-------HHHHHCCCCcEecCchH
Confidence 99999 99999999999997654
No 25
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=2e-41 Score=317.97 Aligned_cols=208 Identities=34% Similarity=0.462 Sum_probs=174.4
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 122 (358)
+.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++..........+......
T Consensus 9 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 88 (260)
T PRK05809 9 EKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNK 88 (260)
T ss_pred EEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999994489999999998865443333344455567
Q ss_pred HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND 202 (358)
Q Consensus 123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~ 202 (358)
++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++ ++|+
T Consensus 89 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--l~g~ 166 (260)
T PRK05809 89 VFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELI--YTGD 166 (260)
T ss_pred HHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHH--HhCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccccccccccchhhHhcCCceEEEecCCccHH-HHHHHHhhhccccccceeccccccc
Q psy504 203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVH-ISALIVWNYNASIEMSYCGFSLLNT 259 (358)
Q Consensus 203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~-~~~l~~~n~~~~~e~~~~gk~L~~~ 259 (358)
+++| ++|+++|||+++++..+.... ......+...++......+..+...
T Consensus 167 ~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~ 217 (260)
T PRK05809 167 MINA-------EEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCKDAINRG 217 (260)
T ss_pred CCCH-------HHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999 999999999999976443333 2233344444444444444444333
No 26
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-41 Score=317.56 Aligned_cols=178 Identities=31% Similarity=0.531 Sum_probs=161.5
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-HHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTLR 121 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-~~~~~~~~~~~ 121 (358)
+.+++|++||||||++ |++|.+|+.+|.++++.++.|+++|+|||+|. |++||+|.|++++..... .....+....+
T Consensus 7 ~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 84 (257)
T PRK07658 7 RVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGE-GRFFSAGADIKEFTSVTEAEQATELAQLGQ 84 (257)
T ss_pred EeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhccCchhhHHHHHHHHH
Confidence 3478999999999985 99999999999999999999999999999999 789999999998754332 22333445567
Q ss_pred HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN 201 (358)
Q Consensus 122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg 201 (358)
.++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+ ++|
T Consensus 85 ~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--l~g 162 (257)
T PRK07658 85 VTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMM--LTS 162 (257)
T ss_pred HHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHH--HcC
Confidence 788899999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred cccccccccccchhhHhcCCceEEEecCCc
Q psy504 202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ 231 (358)
Q Consensus 202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~ 231 (358)
+++++ ++|+++|||+++++..+.
T Consensus 163 ~~~~a-------~eA~~~Glv~~vv~~~~l 185 (257)
T PRK07658 163 EPITG-------AEALKWGLVNGVFPEETL 185 (257)
T ss_pred CCcCH-------HHHHHcCCcCeecChhHH
Confidence 99999 999999999999976443
No 27
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.4e-41 Score=317.51 Aligned_cols=178 Identities=27% Similarity=0.402 Sum_probs=163.2
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVST 119 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~~~~~~ 119 (358)
+.+++|++|+||||++.|++|.+|+.+|.++++.+++|+++|+|||+|. |+.||+|.|++++... .......+...
T Consensus 8 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 86 (260)
T PRK07511 8 RREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGA-GGFFCAGGNLNRLLENRAKPPSVQAASIDG 86 (260)
T ss_pred EeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECC-CCCcccCcCHHHHhhcccccchhHHHHHHH
Confidence 3578999999999999999999999999999999999999999999998 7999999999987542 12223445566
Q ss_pred HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL 199 (358)
Q Consensus 120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l 199 (358)
+++++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+ +
T Consensus 87 ~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~--l 164 (260)
T PRK07511 87 LHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELL--L 164 (260)
T ss_pred HHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHH--H
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cccccccccccccchhhHhcCCceEEEecCC
Q psy504 200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS 230 (358)
Q Consensus 200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~ 230 (358)
+|+++++ ++|+++|||+++++..+
T Consensus 165 tg~~~~a-------~eA~~~Glv~~vv~~~~ 188 (260)
T PRK07511 165 EGKPISA-------ERLHALGVVNRLAEPGQ 188 (260)
T ss_pred hCCCCCH-------HHHHHcCCccEeeCchH
Confidence 9999999 99999999999997644
No 28
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.6e-41 Score=318.06 Aligned_cols=182 Identities=24% Similarity=0.384 Sum_probs=158.7
Q ss_pred EEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHH---HHHH
Q psy504 39 YHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED---QIRS 115 (358)
Q Consensus 39 ~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~---~~~~ 115 (358)
..++..+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++...... ....
T Consensus 7 l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~ 85 (265)
T PRK05674 7 IELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGR-GRHFSAGADLAWMQQSADLDYNTNLD 85 (265)
T ss_pred EEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhcccccchhhhH
Confidence 34443347899999999999999999999999999999999999999999999 7999999999987432111 1112
Q ss_pred HHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhh
Q psy504 116 FVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALY 195 (358)
Q Consensus 116 ~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~l 195 (358)
....+.+++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ ++++++|..+|+++
T Consensus 86 ~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a~~l 164 (265)
T PRK05674 86 DARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERAARRY 164 (265)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHHHHHH
Confidence 23345678889999999999999999999999999999999999999999999999999987765 58899999999999
Q ss_pred hhhhcccccccccccccchhhHhcCCceEEEecCCc
Q psy504 196 EDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ 231 (358)
Q Consensus 196 l~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~ 231 (358)
+ |||+.++| ++|+++|||+++++..+.
T Consensus 165 ~--ltg~~~~a-------~eA~~~Glv~~vv~~~~l 191 (265)
T PRK05674 165 A--LTAERFDG-------RRARELGLLAESYPAAEL 191 (265)
T ss_pred H--HhCcccCH-------HHHHHCCCcceecCHHHH
Confidence 9 99999999 999999999999986443
No 29
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-41 Score=316.10 Aligned_cols=184 Identities=22% Similarity=0.376 Sum_probs=163.8
Q ss_pred ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH----HHHHHHHHH
Q psy504 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE----DQIRSFVST 119 (358)
Q Consensus 44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~----~~~~~~~~~ 119 (358)
.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||. |++||+|+|++++..... .....+.+.
T Consensus 8 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07260 8 VEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINAN-GKVFSVGGDLVEMKRAVDEDDVQSLVKIAEL 86 (255)
T ss_pred EECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCcccccCHHHHHhhccccchhhHHHHHHH
Confidence 478999999999999999999999999999999999999999999999 789999999998753211 112233445
Q ss_pred HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL 199 (358)
Q Consensus 120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l 199 (358)
+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+ |
T Consensus 87 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~--l 164 (255)
T PRK07260 87 VNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLA--M 164 (255)
T ss_pred HHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHH--H
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cccccccccccccchhhHhcCCceEEEecCCccHHHHH
Q psy504 200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISA 237 (358)
Q Consensus 200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~ 237 (358)
+|++++| ++|+++|||+++++..+.......
T Consensus 165 ~g~~~sa-------~eA~~~Glv~~vv~~~~l~~~a~~ 195 (255)
T PRK07260 165 TGEALTA-------EKALEYGFVYRVAESEKLEKTCEQ 195 (255)
T ss_pred hCCccCH-------HHHHHcCCcceecCHhHHHHHHHH
Confidence 9999999 999999999999976544333333
No 30
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=8e-41 Score=313.46 Aligned_cols=175 Identities=38% Similarity=0.642 Sum_probs=161.8
Q ss_pred ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccc-cCHHHHHHHHHHHHH
Q psy504 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLT-LNEDQIRSFVSTLRY 122 (358)
Q Consensus 44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~-~~~~~~~~~~~~~~~ 122 (358)
.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++.. ........+....+.
T Consensus 11 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~ 89 (257)
T COG1024 11 REDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGA-GKAFSAGADLKELLSPEDGNAAENLMQPGQD 89 (257)
T ss_pred eeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC-CCceecccCHHHHhcccchhHHHHHHhHHHH
Confidence 356699999999999999999999999999999999999999999999 699999999999875 222222356677778
Q ss_pred HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND 202 (358)
Q Consensus 123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~ 202 (358)
++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|+ +||+
T Consensus 90 ~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~--ltg~ 167 (257)
T COG1024 90 LLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELL--LTGE 167 (257)
T ss_pred HHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHH--HcCC
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999 9999
Q ss_pred ccccccccccchhhHhcCCceEEEec
Q psy504 203 CMSSLDTRYMWCTPYRRGLVVTLVIK 228 (358)
Q Consensus 203 ~i~a~~d~~mw~ea~~~GLv~~vv~~ 228 (358)
.+++ ++|+++|||+++++.
T Consensus 168 ~~~a-------~eA~~~Glv~~vv~~ 186 (257)
T COG1024 168 PISA-------AEALELGLVDEVVPD 186 (257)
T ss_pred cCCH-------HHHHHcCCcCeeeCC
Confidence 9999 999999999999975
No 31
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-41 Score=316.85 Aligned_cols=181 Identities=29% Similarity=0.459 Sum_probs=159.9
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC---HHH-HHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN---EDQ-IRSFVS 118 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~---~~~-~~~~~~ 118 (358)
+.+++|++||||||++.|++|.+|+.+|.+++++++ |+++++|||||. |++||+|.|++++.... ... ...+..
T Consensus 9 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 86 (262)
T PRK08140 9 AIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGA-GRGFCAGQDLADRDVTPGGAMPDLGESIET 86 (262)
T ss_pred EeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECC-CCCcccCcChHHHhccccccchhhHHHHHH
Confidence 347899999999999999999999999999999999 999999999999 78999999999874321 111 112222
Q ss_pred HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504 119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL 198 (358)
Q Consensus 119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ 198 (358)
.+..++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+
T Consensus 87 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~-- 164 (262)
T PRK08140 87 FYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLA-- 164 (262)
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHH--
Confidence 345578889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccccccchhhHhcCCceEEEecCCccHH
Q psy504 199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVH 234 (358)
Q Consensus 199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~ 234 (358)
++|+++++ ++|+++|||+++++..+....
T Consensus 165 l~g~~~~a-------~eA~~~Glv~~vv~~~~l~~~ 193 (262)
T PRK08140 165 LLGEKLSA-------EQAEQWGLIWRVVDDAALADE 193 (262)
T ss_pred HcCCCcCH-------HHHHHcCCccEeeChHHHHHH
Confidence 99999999 999999999999986543333
No 32
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.2e-41 Score=317.64 Aligned_cols=185 Identities=28% Similarity=0.420 Sum_probs=163.2
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-HHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTLR 121 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-~~~~~~~~~~~ 121 (358)
+.+++|++|+||||+++|++|.+|+.+|.++++.++.|++||+|||||. |++||+|.|++++..... +........+.
T Consensus 16 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 94 (266)
T PRK08139 16 EDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAA-GKAFCAGHDLKEMRAARGLAYFRALFARCS 94 (266)
T ss_pred EeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecC-CCcceeccCHHHHhcccchhHHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999999999 789999999998754322 22334455667
Q ss_pred HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN 201 (358)
Q Consensus 122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg 201 (358)
+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++ +++|+|++|..+|++++ ++|
T Consensus 95 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~~l~--ltg 171 (266)
T PRK08139 95 RVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAMEML--LTG 171 (266)
T ss_pred HHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHHHHH--HcC
Confidence 788899999999999999999999999999999999999999999999999999765 57899999999999999 999
Q ss_pred cccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504 202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL 238 (358)
Q Consensus 202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l 238 (358)
++++| ++|+++|||+++++..+......++
T Consensus 172 ~~~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~ 201 (266)
T PRK08139 172 EFIDA-------ATAREWGLVNRVVPADALDAAVARL 201 (266)
T ss_pred CccCH-------HHHHHcCCccEeeChhHHHHHHHHH
Confidence 99999 9999999999999865444443333
No 33
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.9e-41 Score=318.17 Aligned_cols=185 Identities=23% Similarity=0.377 Sum_probs=163.1
Q ss_pred ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc----CHHHHHHHHHH
Q psy504 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL----NEDQIRSFVST 119 (358)
Q Consensus 44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~----~~~~~~~~~~~ 119 (358)
.+++|++|+||||++.|+++.+|+.+|.++++.++.|+++++|||||. |++||+|.|++++... .......+...
T Consensus 23 ~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~ 101 (277)
T PRK08258 23 VDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGA-GGNFCSGGDVHEIIGPLTKMDMPELLAFTRM 101 (277)
T ss_pred EECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCC-CCCcccccCHHHHhccccccChhHHHHHHHH
Confidence 478999999999999999999999999999999999999999999998 7899999999987431 11223344455
Q ss_pred HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceeccccc-CcccccccccccchhhHHhhhhh
Q psy504 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIP-GAGGTQRLPRIVGIPLAALYEDL 198 (358)
Q Consensus 120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p-~~g~s~~L~r~iG~~~A~~ll~~ 198 (358)
..+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|..+|++|+
T Consensus 102 ~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~-- 179 (277)
T PRK08258 102 TGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELL-- 179 (277)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHH--
Confidence 56788899999999999999999999999999999999999999999999999995 778899999999999999999
Q ss_pred hcccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504 199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL 238 (358)
Q Consensus 199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l 238 (358)
|+|++++| ++|+++|||+++++..+......++
T Consensus 180 ltg~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~ 212 (277)
T PRK08258 180 YTGRSMSA-------EEGERWGFFNRLVEPEELLAEAQAL 212 (277)
T ss_pred HcCCCCCH-------HHHHHcCCCcEecCHHHHHHHHHHH
Confidence 99999999 9999999999999764433333333
No 34
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-41 Score=315.84 Aligned_cols=201 Identities=21% Similarity=0.279 Sum_probs=167.7
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHH
Q psy504 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ 126 (358)
Q Consensus 47 ~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~ 126 (358)
+|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++...... ...+...+.+++..
T Consensus 15 ~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~-~~~~~~~~~~~~~~ 92 (251)
T PRK06023 15 GVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGT-EGCFSAGNDMQDFLAAAMG-GTSFGSEILDFLIA 92 (251)
T ss_pred cEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCeecCcCHHHHhhcccc-chhhHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999998 7899999999987542111 11233445677889
Q ss_pred HHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccccccc
Q psy504 127 LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSS 206 (358)
Q Consensus 127 i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a 206 (358)
+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++ ++|+++++
T Consensus 93 l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~--l~g~~~~a 170 (251)
T PRK06023 93 LAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALL--ALGEGFSA 170 (251)
T ss_pred HHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHH--HhCCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecccccc
Q psy504 207 LDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLN 258 (358)
Q Consensus 207 ~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~ 258 (358)
++|+++|||+++++..+......++.......++......|++++
T Consensus 171 -------~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~ 215 (251)
T PRK06023 171 -------EAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQIARDLMR 215 (251)
T ss_pred -------HHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999976443333333322222333333334444444
No 35
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=2.4e-41 Score=317.28 Aligned_cols=178 Identities=31% Similarity=0.450 Sum_probs=157.6
Q ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-HHHHHHHHHHHHH
Q psy504 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTLRYM 123 (358)
Q Consensus 45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-~~~~~~~~~~~~l 123 (358)
+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++..... ............+
T Consensus 10 ~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (259)
T TIGR01929 10 TDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDV 89 (259)
T ss_pred CCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999994489999999987642211 1100111124467
Q ss_pred HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccc
Q psy504 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDC 203 (358)
Q Consensus 124 ~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~ 203 (358)
+..+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+ ++|++
T Consensus 90 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~--l~g~~ 167 (259)
T TIGR01929 90 QRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIW--FLCRQ 167 (259)
T ss_pred HHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHH--HhCCc
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cccccccccchhhHhcCCceEEEecCCc
Q psy504 204 MSSLDTRYMWCTPYRRGLVVTLVIKFSQ 231 (358)
Q Consensus 204 i~a~~d~~mw~ea~~~GLv~~vv~~~~~ 231 (358)
++| ++|+++|||+++++..+.
T Consensus 168 ~~a-------~eA~~~Glv~~vv~~~~l 188 (259)
T TIGR01929 168 YDA-------EQALDMGLVNTVVPLADL 188 (259)
T ss_pred cCH-------HHHHHcCCcccccCHHHH
Confidence 999 999999999999986443
No 36
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.1e-41 Score=315.63 Aligned_cols=176 Identities=29% Similarity=0.467 Sum_probs=156.6
Q ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHHHHHHHHH
Q psy504 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVSTLR 121 (358)
Q Consensus 45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~~~~~~~~ 121 (358)
+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||. |++||+|.|++++... ...........+.
T Consensus 12 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T PRK07468 12 ARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGA-GKSFCAGGDLGWMRAQMTADRATRIEEARRLA 90 (262)
T ss_pred CCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECC-CCcccCCcCHHHHHhhcccchhhHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999 7899999999986431 1111122334556
Q ss_pred HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN 201 (358)
Q Consensus 122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg 201 (358)
.++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++ +++|..+|++|+ ++|
T Consensus 91 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~a~~ll--l~g 167 (262)
T PRK07468 91 MMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEANARRVF--MSA 167 (262)
T ss_pred HHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHHHHHHHH--HhC
Confidence 78889999999999999999999999999999999999999999999999999999998755 559999999999 999
Q ss_pred cccccccccccchhhHhcCCceEEEecCCc
Q psy504 202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ 231 (358)
Q Consensus 202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~ 231 (358)
+++++ ++|+++|||+++++..+.
T Consensus 168 ~~~~a-------~eA~~~Glv~~v~~~~~l 190 (262)
T PRK07468 168 RLFDA-------EEAVRLGLLSRVVPAERL 190 (262)
T ss_pred CccCH-------HHHHHcCCcceecCHHHH
Confidence 99999 999999999999986443
No 37
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=4.1e-41 Score=316.65 Aligned_cols=186 Identities=28% Similarity=0.409 Sum_probs=161.6
Q ss_pred EeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHH
Q psy504 40 HNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVST 119 (358)
Q Consensus 40 ~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~ 119 (358)
.++..+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++....... ....
T Consensus 12 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~---~~~~ 87 (265)
T PLN02888 12 LVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGS-GRAFCSGVDLTAAEEVFKGD---VKDV 87 (265)
T ss_pred EEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCcccCCCCHHHHHhhccch---hhHH
Confidence 3344478999999999999999999999999999999999999999999999 78999999999764321111 1112
Q ss_pred HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL 199 (358)
Q Consensus 120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l 199 (358)
..+++..+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++ |
T Consensus 88 ~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~--l 165 (265)
T PLN02888 88 ETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVS--L 165 (265)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHH--H
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504 200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL 238 (358)
Q Consensus 200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l 238 (358)
+|++++| ++|+++|||+++++..+......++
T Consensus 166 tg~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~ 197 (265)
T PLN02888 166 TAMPLTA-------ETAERWGLVNHVVEESELLKKAREV 197 (265)
T ss_pred hCCccCH-------HHHHHcCCccEeeChHHHHHHHHHH
Confidence 9999999 9999999999999765433333333
No 38
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-41 Score=316.41 Aligned_cols=177 Identities=31% Similarity=0.483 Sum_probs=162.8
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 122 (358)
+++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|. |++||+|.|++++....... ..+...+++
T Consensus 10 ~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~-g~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~ 87 (259)
T PRK06688 10 ELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGA-GRAFSAGGDIKDFPKAPPKP-PDELAPVNR 87 (259)
T ss_pred EEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCccCccCHHHHhccCcch-HHHHHHHHH
Confidence 3478999999999999999999999999999999999999999999999 69999999999876543222 345566778
Q ss_pred HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND 202 (358)
Q Consensus 123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~ 202 (358)
++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++ ++|+
T Consensus 88 ~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~--l~g~ 165 (259)
T PRK06688 88 FLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEML--LLGE 165 (259)
T ss_pred HHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHH--HhCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccccccccccchhhHhcCCceEEEecCC
Q psy504 203 CMSSLDTRYMWCTPYRRGLVVTLVIKFS 230 (358)
Q Consensus 203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~ 230 (358)
++++ ++|+++|||+++++..+
T Consensus 166 ~~~a-------~eA~~~Glv~~v~~~~~ 186 (259)
T PRK06688 166 PLSA-------EEALRIGLVNRVVPAAE 186 (259)
T ss_pred ccCH-------HHHHHcCCcceecCHHH
Confidence 9999 99999999999997644
No 39
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.6e-41 Score=315.33 Aligned_cols=185 Identities=32% Similarity=0.512 Sum_probs=160.9
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVST 119 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~~~~~~ 119 (358)
+.+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++... ...........
T Consensus 9 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 87 (262)
T PRK05995 9 EQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGA-GKAFCAGADLNWMKKMAGYSDDENRADARR 87 (262)
T ss_pred EeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECC-CCccccCcCHHHHhhhcccCchhhhhHHHH
Confidence 3478999999999999999999999999999999999999999999999 6899999999987432 11111222345
Q ss_pred HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL 199 (358)
Q Consensus 120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l 199 (358)
+..++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|..+|++|+ +
T Consensus 88 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~a~~l~--l 164 (262)
T PRK05995 88 LADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGERAARRYF--L 164 (262)
T ss_pred HHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHHHHHHHH--H
Confidence 6678889999999999999999999999999999999999999999999999999988765 589999999999999 9
Q ss_pred cccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504 200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL 238 (358)
Q Consensus 200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l 238 (358)
+|++++| ++|+++|||+++++..+.......+
T Consensus 165 ~g~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~ 196 (262)
T PRK05995 165 TAERFDA-------AEALRLGLVHEVVPAEALDAKVDEL 196 (262)
T ss_pred cCCccCH-------HHHHHcCCCCeecCHHHHHHHHHHH
Confidence 9999999 9999999999999764433333333
No 40
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5e-41 Score=315.88 Aligned_cols=178 Identities=26% Similarity=0.447 Sum_probs=156.7
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHH-HHH-H-H-HH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED-QIR-S-F-VS 118 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~-~~~-~-~-~~ 118 (358)
+.+++|++|+||||+++|++|.+|+.+|.+++++++.|+++|+|||||. |++||+|.|++++...... ... . + ..
T Consensus 10 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 88 (263)
T PRK07799 10 EQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGA-GGAFCAGMDLKAATKKPPGDSFKDGSYDPS 88 (263)
T ss_pred EEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCccccccCHHHHhhccccchhhhhhhhhh
Confidence 3578999999999999999999999999999999999999999999999 7899999999987643211 111 1 1 11
Q ss_pred HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504 119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL 198 (358)
Q Consensus 119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ 198 (358)
.+..+ .++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+
T Consensus 89 ~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~-- 165 (263)
T PRK07799 89 RIDAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLL-- 165 (263)
T ss_pred HHHHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHH--
Confidence 22223 357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccccccchhhHhcCCceEEEecCCc
Q psy504 199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ 231 (358)
Q Consensus 199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~ 231 (358)
|+|++++| ++|+++|||+++++..+.
T Consensus 166 ltg~~~~a-------~eA~~~Glv~~vv~~~~l 191 (263)
T PRK07799 166 LTGRHITA-------AEAKEIGLIGHVVPDGQA 191 (263)
T ss_pred HcCCCCCH-------HHHHHcCCccEecCcchH
Confidence 99999999 999999999999986543
No 41
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5e-41 Score=315.20 Aligned_cols=178 Identities=27% Similarity=0.369 Sum_probs=156.0
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 122 (358)
+.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|+++||+|.|++++........ ....+..
T Consensus 9 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~--~~~~~~~ 86 (259)
T PRK06494 9 ERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGW--PESGFGG 86 (259)
T ss_pred EeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchh--hhHHHHH
Confidence 34789999999999999999999999999999999999999999999995589999999998754322111 1112222
Q ss_pred HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND 202 (358)
Q Consensus 123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~ 202 (358)
+ ..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++ ++|+
T Consensus 87 ~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ll--l~g~ 163 (259)
T PRK06494 87 L-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMI--LTGR 163 (259)
T ss_pred H-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHH--HcCC
Confidence 3 334689999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccccccccccchhhHhcCCceEEEecCCcc
Q psy504 203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQP 232 (358)
Q Consensus 203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~ 232 (358)
+++| ++|+++|||+++++..+..
T Consensus 164 ~~~a-------~eA~~~GLv~~vv~~~~l~ 186 (259)
T PRK06494 164 RVTA-------REGLELGFVNEVVPAGELL 186 (259)
T ss_pred cCCH-------HHHHHcCCCcEecCHhHHH
Confidence 9999 9999999999999864433
No 42
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-40 Score=318.80 Aligned_cols=178 Identities=29% Similarity=0.434 Sum_probs=159.4
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---C----------
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---N---------- 109 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~---------- 109 (358)
+.+++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++... .
T Consensus 9 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 87 (296)
T PRK08260 9 DVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGA-GRAFCAGADLSAGGNTFDLDAPRTPVEADE 87 (296)
T ss_pred eeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECC-CCCeecCcChHHhhhccccccccccccccc
Confidence 3478999999999999999999999999999999999999999999998 7999999999986421 0
Q ss_pred ----HHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCccccccccc
Q psy504 110 ----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPR 185 (358)
Q Consensus 110 ----~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r 185 (358)
......+......++..+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r 167 (296)
T PRK08260 88 EDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPR 167 (296)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHH
Confidence 0011123333456788899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504 186 IVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS 230 (358)
Q Consensus 186 ~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~ 230 (358)
++|..+|++|+ |+|++++| ++|+++|||+++++..+
T Consensus 168 ~vG~~~A~~ll--ltg~~~~a-------~eA~~~GLv~~vv~~~~ 203 (296)
T PRK08260 168 LVGLQTALEWV--YSGRVFDA-------QEALDGGLVRSVHPPDE 203 (296)
T ss_pred hhCHHHHHHHH--HcCCccCH-------HHHHHCCCceeecCHHH
Confidence 99999999999 99999999 99999999999997644
No 43
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.2e-41 Score=313.71 Aligned_cols=200 Identities=28% Similarity=0.388 Sum_probs=163.8
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 122 (358)
+.+++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||. |++||+|.|++++....... .....+..
T Consensus 8 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~--~~~~~~~~ 84 (254)
T PRK08252 8 ERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGA-GGTFCAGMDLKAFARGERPS--IPGRGFGG 84 (254)
T ss_pred EEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCceEcCcCHHHHhcccchh--hhHHHHHH
Confidence 3478999999999999999999999999999999999999999999999 78999999999876432111 11112222
Q ss_pred HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND 202 (358)
Q Consensus 123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~ 202 (358)
+. ...+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++ ++|+
T Consensus 85 ~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~--l~g~ 160 (254)
T PRK08252 85 LT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELA--LTGD 160 (254)
T ss_pred HH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHH--HcCC
Confidence 22 2479999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccccccccccchhhHhcCCceEEEecCCccHHHHHH-HHhhhccccccceecccc
Q psy504 203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL-IVWNYNASIEMSYCGFSL 256 (358)
Q Consensus 203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l-~~~n~~~~~e~~~~gk~L 256 (358)
+++| ++|+++|||+++++..+......++ ..+...++......++.+
T Consensus 161 ~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 208 (254)
T PRK08252 161 MLTA-------ERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVAASKRIV 208 (254)
T ss_pred ccCH-------HHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999 9999999999999865433333333 233333333344344433
No 44
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.1e-40 Score=316.07 Aligned_cols=198 Identities=26% Similarity=0.323 Sum_probs=163.8
Q ss_pred CcccccCCCcceeEEEEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHc-----CCCceEEEEeecCCCceec
Q psy504 24 STSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRG-----DEEVRCVLLRSLVKDVFCA 98 (358)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~-----d~~vrvVVltg~gg~~Fsa 98 (358)
.++|+.++....+.++ ++.+++|++|+|| |++.|+||.+|+.+|.+++++++. |+++|+|||||.+|++||+
T Consensus 5 ~~~~~~~~~~~~~~i~--~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~Fca 81 (287)
T PRK08788 5 VRPFPEAGELSQLRVY--YEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNL 81 (287)
T ss_pred ccccccccccCceEEE--EEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEe
Confidence 4566776653344433 3357899999996 989999999999999999999998 8999999999986789999
Q ss_pred CCCchhcccc----CHHHHHHHHHHHHHHHHHHH---cCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceec
Q psy504 99 GADLKHRLTL----NEDQIRSFVSTLRYMTCQLE---SIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKL 171 (358)
Q Consensus 99 G~Dl~~~~~~----~~~~~~~~~~~~~~l~~~i~---~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~l 171 (358)
|.|++++... .......+...+...+.++. .+|||+||+|||+|+|||++|+++||+||++++++|++||+++
T Consensus 82 G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~l 161 (287)
T PRK08788 82 GGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILF 161 (287)
T ss_pred CcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhh
Confidence 9999987431 11111122222233333333 7999999999999999999999999999999999999999999
Q ss_pred ccccCcccccccccccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccH
Q psy504 172 AIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPV 233 (358)
Q Consensus 172 Gl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~ 233 (358)
|++|++|++++|++++|..+|++|+ +||+.++| ++|+++|||+++++..+...
T Consensus 162 Gl~p~~g~~~~l~~~vG~~~A~ell--ltG~~l~A-------~eA~~~GLV~~vv~~~el~~ 214 (287)
T PRK08788 162 NLFPGMGAYSFLARRVGPKLAEELI--LSGKLYTA-------EELHDMGLVDVLVEDGQGEA 214 (287)
T ss_pred CcCCCchHHHHHHHHhhHHHHHHHH--HcCCCCCH-------HHHHHCCCCcEecCchHHHH
Confidence 9999999999999999999999999 99999999 99999999999997654333
No 45
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=1.6e-41 Score=315.90 Aligned_cols=207 Identities=33% Similarity=0.537 Sum_probs=181.6
Q ss_pred eeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHH
Q psy504 42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLR 121 (358)
Q Consensus 42 ~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~ 121 (358)
++.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++||++|. +++||+|.|++++.....+....+...++
T Consensus 2 ~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~-~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 80 (245)
T PF00378_consen 2 YEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGG-GKAFCAGADLKEFLNSDEEEAREFFRRFQ 80 (245)
T ss_dssp EEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEES-TSESBESB-HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeec-ccccccccchhhhhccccccccccchhhc
Confidence 45689999999999999999999999999999999999999999999998 89999999999988775566778888999
Q ss_pred HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN 201 (358)
Q Consensus 122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg 201 (358)
.++.++..+|||+||+|||+|+|||++++++||+|||+++++|++||+++|++|++|++++|+|++|..+|++++ ++|
T Consensus 81 ~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~--l~g 158 (245)
T PF00378_consen 81 ELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELL--LTG 158 (245)
T ss_dssp HHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHH--HHT
T ss_pred cccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccc--ccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred cccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecccccc
Q psy504 202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLN 258 (358)
Q Consensus 202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~ 258 (358)
++++| ++|+++|||++++++.+.......+.......+.......|+.++
T Consensus 159 ~~~~a-------~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~ 208 (245)
T PF00378_consen 159 EPISA-------EEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALRATKKALN 208 (245)
T ss_dssp CEEEH-------HHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccchh-------HHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999 999999999999988775444444443333444444433443333
No 46
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=7.6e-41 Score=316.20 Aligned_cols=205 Identities=26% Similarity=0.345 Sum_probs=167.5
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC--HHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN--EDQIRSFVSTL 120 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~--~~~~~~~~~~~ 120 (358)
+.+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||.|+++||+|.|++++.... ........ ..
T Consensus 18 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~ 96 (273)
T PRK07396 18 KSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRL-NV 96 (273)
T ss_pred EecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhh-HH
Confidence 3578999999999999999999999999999999999999999999999447999999999864321 11111111 23
Q ss_pred HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhc
Q psy504 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLN 200 (358)
Q Consensus 121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~lt 200 (358)
..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++|..+|++|+ ++
T Consensus 97 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~--lt 174 (273)
T PRK07396 97 LDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIW--FL 174 (273)
T ss_pred HHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHHHH--Hh
Confidence 4567789999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504 201 NDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL 257 (358)
Q Consensus 201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~ 257 (358)
|++++| ++|+++|||++|++..+.......+.......++......|+++
T Consensus 175 g~~~~A-------~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 224 (273)
T PRK07396 175 CRQYDA-------QEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAAL 224 (273)
T ss_pred CCCcCH-------HHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999 99999999999998644333333333222233333333344444
No 47
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8e-41 Score=313.96 Aligned_cols=173 Identities=25% Similarity=0.415 Sum_probs=159.6
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC-HHHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-EDQIRSFVSTLR 121 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~-~~~~~~~~~~~~ 121 (358)
+.+++|++|+||||++.|++|.+|+.+|.++++.+ .|+++|+|||+|. |++||+|.|++++.... ......+...++
T Consensus 11 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 88 (260)
T PRK07659 11 KYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGN-GRGFSAGGDIKMMLSSNDESKFDGVMNTIS 88 (260)
T ss_pred EeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECC-CCCcccccCHHHHhhccCchhHHHHHHHHH
Confidence 34789999999999999999999999999999999 5899999999998 78999999999875432 223345566677
Q ss_pred HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN 201 (358)
Q Consensus 122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg 201 (358)
+++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|+ ++|
T Consensus 89 ~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~--ltg 166 (260)
T PRK07659 89 EIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQII--WEG 166 (260)
T ss_pred HHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHH--HhC
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred cccccccccccchhhHhcCCceEEE
Q psy504 202 DCMSSLDTRYMWCTPYRRGLVVTLV 226 (358)
Q Consensus 202 ~~i~a~~d~~mw~ea~~~GLv~~vv 226 (358)
+.++| ++|+++|||++++
T Consensus 167 ~~~~a-------~eA~~~Glv~~vv 184 (260)
T PRK07659 167 KKLSA-------TEALDLGLIDEVI 184 (260)
T ss_pred CccCH-------HHHHHcCChHHHh
Confidence 99999 9999999999999
No 48
>KOG1679|consensus
Probab=100.00 E-value=1.1e-40 Score=292.93 Aligned_cols=232 Identities=40% Similarity=0.601 Sum_probs=207.2
Q ss_pred cceeEEEEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHH
Q psy504 33 KLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ 112 (358)
Q Consensus 33 ~~~~~~~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~ 112 (358)
..++.+.+++..+.||.+|-+|||.++|+|+.-|+++|.++++++..|+.+|+|+|++..+..||+|+||++-..+++++
T Consensus 26 ~~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~E 105 (291)
T KOG1679|consen 26 ANEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSE 105 (291)
T ss_pred CceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHH
Confidence 46899999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhH
Q psy504 113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192 (358)
Q Consensus 113 ~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A 192 (358)
...|...++.++..+.++|.|+||+++|.|+|||++|+++||+|+|+++++|+++|++++++|++|++++|||.+|.+.|
T Consensus 106 v~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~ala 185 (291)
T KOG1679|consen 106 VTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALA 185 (291)
T ss_pred HHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcccccccccccccchhhHhcCCceEEEecCCcc--H---HHHHHHHhhhccccccceecccccccCcchhhcc
Q psy504 193 ALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQP--V---HISALIVWNYNASIEMSYCGFSLLNTWGDRYYLG 267 (358)
Q Consensus 193 ~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~--~---~~~~l~~~n~~~~~e~~~~gk~L~~~~g~~~~~g 267 (358)
+|++ +|++.+++ .+|...|||++++...++- . ...-.+..+-+-++.....+..+..+..-..-.|
T Consensus 186 KELI--ftarvl~g-------~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPiavr~aKlAIn~G~evdiasg 256 (291)
T KOG1679|consen 186 KELI--FTARVLNG-------AEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIAVRLAKLAINLGMEVDIASG 256 (291)
T ss_pred HhHh--hhheeccc-------hhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchhhhHHHHHhccCceeccccc
Confidence 9999 99999999 8999999999999764322 1 1222234444666777777777777766666666
Q ss_pred ccchhh
Q psy504 268 LNGIEL 273 (358)
Q Consensus 268 ln~~El 273 (358)
+.-.|+
T Consensus 257 l~iEe~ 262 (291)
T KOG1679|consen 257 LSIEEM 262 (291)
T ss_pred ccHHHH
Confidence 655443
No 49
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.5e-41 Score=313.50 Aligned_cols=183 Identities=29% Similarity=0.396 Sum_probs=157.4
Q ss_pred ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (358)
Q Consensus 44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l 123 (358)
.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++.......... .....+
T Consensus 9 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~-g~~FcaG~Dl~~~~~~~~~~~~~--~~~~~~ 85 (254)
T PRK08259 9 RNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGA-GGTFCAGADLKAVGTGRGNRLHP--SGDGPM 85 (254)
T ss_pred EECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCccCCcChHHHhcccchhhhh--hhcchh
Confidence 478999999999999999999999999999999999999999999998 79999999999875432211111 001112
Q ss_pred HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccc
Q psy504 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDC 203 (358)
Q Consensus 124 ~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~ 203 (358)
...+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|.+|++++|++++|..+|++++ ++|++
T Consensus 86 ~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ll--l~g~~ 163 (254)
T PRK08259 86 GPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLI--LTGRP 163 (254)
T ss_pred hhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHH--HcCCc
Confidence 2234589999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504 204 MSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL 238 (358)
Q Consensus 204 i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l 238 (358)
++| ++|+++|||+++++..+.......+
T Consensus 164 ~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~ 191 (254)
T PRK08259 164 VDA-------DEALAIGLANRVVPKGQARAAAEEL 191 (254)
T ss_pred cCH-------HHHHHcCCCCEeeChhHHHHHHHHH
Confidence 999 9999999999999875544433333
No 50
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=8.8e-41 Score=313.85 Aligned_cols=182 Identities=28% Similarity=0.400 Sum_probs=159.0
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 122 (358)
+.+++|++||||||+ .|++|.+|+.+|.++++.++.|++||+|||||.|+++||+|.|++++....... ..+......
T Consensus 8 ~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~ 85 (261)
T PRK03580 8 TRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-ADFGPGGFA 85 (261)
T ss_pred EEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch-hhhhhhhhH
Confidence 357899999999996 599999999999999999999999999999999558999999999875432211 112222234
Q ss_pred HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND 202 (358)
Q Consensus 123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~ 202 (358)
++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++ ++|+
T Consensus 86 ~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~--l~g~ 163 (261)
T PRK03580 86 GLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMV--MTGR 163 (261)
T ss_pred HHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHH--HhCC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccccccccccchhhHhcCCceEEEecCCccHHH
Q psy504 203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHI 235 (358)
Q Consensus 203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~ 235 (358)
+++| ++|+++|||+++++..+.....
T Consensus 164 ~~~a-------~eA~~~Glv~~vv~~~~l~~~a 189 (261)
T PRK03580 164 RMDA-------EEALRWGIVNRVVPQAELMDRA 189 (261)
T ss_pred ccCH-------HHHHHcCCCcEecCHhHHHHHH
Confidence 9999 9999999999999865433333
No 51
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-40 Score=313.51 Aligned_cols=181 Identities=25% Similarity=0.414 Sum_probs=161.3
Q ss_pred ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCC-CceEEEEeecCCCceecCCCchhccccCH------HHHHHH
Q psy504 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDE-EVRCVLLRSLVKDVFCAGADLKHRLTLNE------DQIRSF 116 (358)
Q Consensus 44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~-~vrvVVltg~gg~~FsaG~Dl~~~~~~~~------~~~~~~ 116 (358)
.+++|++|+||||+++|++|.+|+.+|.++++.++.|+ ++++|||||. |++||+|+|++++..... .....+
T Consensus 10 ~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 88 (266)
T PRK05981 10 FDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGA-GRGFCTGANLQGRGSGGRESDSGGDAGAAL 88 (266)
T ss_pred eECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcccccCHHhhhcccccccccchhHHHH
Confidence 46899999999999999999999999999999999876 4999999999 789999999998754211 112233
Q ss_pred HHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhh
Q psy504 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYE 196 (358)
Q Consensus 117 ~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll 196 (358)
...++.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||.++|++|++|++++|++++|..+|++|+
T Consensus 89 ~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~ 168 (266)
T PRK05981 89 ETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELS 168 (266)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHH
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccccccccchhhHhcCCceEEEecCCccHH
Q psy504 197 DLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVH 234 (358)
Q Consensus 197 ~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~ 234 (358)
++|++++| ++|+++|||+++++..+....
T Consensus 169 --l~g~~~~a-------~eA~~~Glv~~vv~~~~~~~~ 197 (266)
T PRK05981 169 --LLGEKLPA-------ETALQWGLVNRVVDDAELMAE 197 (266)
T ss_pred --HhCCCcCH-------HHHHHcCCceEeeCHhHHHHH
Confidence 99999999 999999999999986543333
No 52
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.5e-40 Score=310.29 Aligned_cols=181 Identities=23% Similarity=0.367 Sum_probs=161.9
Q ss_pred eeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHH
Q psy504 41 NSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTL 120 (358)
Q Consensus 41 l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~ 120 (358)
+++.+++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||||. |++||+|.|++++....... ..+. .
T Consensus 8 ~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~-~~~~-~- 83 (249)
T PRK07110 8 LREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGY-PNYFATGGTQEGLLSLQTGK-GTFT-E- 83 (249)
T ss_pred EEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCeeCCcChHHHhhccchh-hhHh-h-
Confidence 345578999999999999999999999999999999999999999999999 78999999999875432211 1222 2
Q ss_pred HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhc
Q psy504 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLN 200 (358)
Q Consensus 121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~lt 200 (358)
..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++ ++
T Consensus 84 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~ll--lt 161 (249)
T PRK07110 84 ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEML--LT 161 (249)
T ss_pred HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHH--Hc
Confidence 5678899999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ccccccccccccchhhHhcCCceEEEecCCccHH
Q psy504 201 NDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVH 234 (358)
Q Consensus 201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~ 234 (358)
|+++++ ++|+++|||+++++..+....
T Consensus 162 g~~~~a-------~eA~~~Glv~~vv~~~~l~~~ 188 (249)
T PRK07110 162 ARYYRG-------AELKKRGVPFPVLPRAEVLEK 188 (249)
T ss_pred CCccCH-------HHHHHcCCCeEEeChHHHHHH
Confidence 999999 999999999999976543333
No 53
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=1.2e-40 Score=312.97 Aligned_cols=205 Identities=20% Similarity=0.315 Sum_probs=170.7
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecC-CCceecCCCchhccccCHHHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLV-KDVFCAGADLKHRLTLNEDQIRSFVSTLR 121 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~g-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~ 121 (358)
+.+++|++||||||++.|++|.+|+.+|.++++.++.|+ +|+|||||.+ +++||+|.|++++.....+ ...+...+.
T Consensus 9 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~-~~~~~~~~~ 86 (261)
T PRK11423 9 VTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRD-PLSYDDPLR 86 (261)
T ss_pred EeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcccc-HHHHHHHHH
Confidence 347899999999999999999999999999999999887 9999999963 5899999999987432211 123445567
Q ss_pred HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN 201 (358)
Q Consensus 122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg 201 (358)
+++..+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|..+|++++ ++|
T Consensus 87 ~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~--l~g 164 (261)
T PRK11423 87 QILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMF--FTA 164 (261)
T ss_pred HHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHH--HcC
Confidence 788899999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred cccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecccccc
Q psy504 202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLN 258 (358)
Q Consensus 202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~ 258 (358)
++++| ++|+++|||++|++..+.......+.......++......|++++
T Consensus 165 ~~~~a-------~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~ 214 (261)
T PRK11423 165 SPITA-------QRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEQLR 214 (261)
T ss_pred CCcCH-------HHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999 999999999999976443333333333333334444444444443
No 54
>PLN02921 naphthoate synthase
Probab=100.00 E-value=3.7e-40 Score=317.86 Aligned_cols=204 Identities=25% Similarity=0.297 Sum_probs=167.1
Q ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHH-HHHHH
Q psy504 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVS-TLRYM 123 (358)
Q Consensus 45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~-~~~~l 123 (358)
+++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++............. ....+
T Consensus 74 ~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 153 (327)
T PLN02921 74 GEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDL 153 (327)
T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999448999999999764321110011111 12456
Q ss_pred HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccc
Q psy504 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDC 203 (358)
Q Consensus 124 ~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~ 203 (358)
+..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+ ++|+.
T Consensus 154 ~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ell--ltG~~ 231 (327)
T PLN02921 154 QIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMW--FLARF 231 (327)
T ss_pred HHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHH--HcCCc
Confidence 7789999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504 204 MSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL 257 (358)
Q Consensus 204 i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~ 257 (358)
++| ++|+++|||+++++..+......++.......++......|+++
T Consensus 232 ~~A-------~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~~~K~~l 278 (327)
T PLN02921 232 YTA-------SEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIRVLKSAL 278 (327)
T ss_pred CCH-------HHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999 99999999999998654444443443332333333333334444
No 55
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=2.4e-40 Score=309.17 Aligned_cols=172 Identities=24% Similarity=0.380 Sum_probs=154.9
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 122 (358)
+.+++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++.. ...........+
T Consensus 6 ~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~-g~~FcaG~Dl~~~~~---~~~~~~~~~~~~ 80 (251)
T TIGR03189 6 ERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAE-GPHFSFGASVAEHMP---DQCAAMLASLHK 80 (251)
T ss_pred EeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECC-CCceecCcChhhhCc---hhHHHHHHHHHH
Confidence 347889999999997 599999999999999999999999999999999 789999999997532 111233445567
Q ss_pred HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND 202 (358)
Q Consensus 123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~ 202 (358)
++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++++|++++|..+|++|+ |+|+
T Consensus 81 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~--ltg~ 157 (251)
T TIGR03189 81 LVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLL--YSGR 157 (251)
T ss_pred HHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHH--HcCC
Confidence 888999999999999999999999999999999999999999999999999987 4578999999999999999 9999
Q ss_pred ccccccccccchhhHhcCCceEEEecC
Q psy504 203 CMSSLDTRYMWCTPYRRGLVVTLVIKF 229 (358)
Q Consensus 203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~ 229 (358)
+++| ++|+++|||++++++.
T Consensus 158 ~~~a-------~eA~~~Glv~~v~~~~ 177 (251)
T TIGR03189 158 SIDG-------AEGARIGLANAVAEDP 177 (251)
T ss_pred CCCH-------HHHHHCCCcceecCcH
Confidence 9999 9999999999999643
No 56
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.3e-40 Score=327.69 Aligned_cols=253 Identities=19% Similarity=0.280 Sum_probs=195.5
Q ss_pred eeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC----HHHHHHHH
Q psy504 42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQIRSFV 117 (358)
Q Consensus 42 ~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~----~~~~~~~~ 117 (358)
.+.++++++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|. |++||+|+|++++.... .+....++
T Consensus 46 ~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~f 124 (407)
T PLN02851 46 VEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGS-GRAFCSGADVVSLYHLINEGNVEECKLFF 124 (407)
T ss_pred EEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHH
Confidence 44578999999999999999999999999999999999999999999999 68999999999875421 12344566
Q ss_pred HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhh
Q psy504 118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYED 197 (358)
Q Consensus 118 ~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~ 197 (358)
...+++...+.++|||+||++||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. +++|+
T Consensus 125 ~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~-g~~L~- 202 (407)
T PLN02851 125 ENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYL-GEYLA- 202 (407)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHH-HHHHH-
Confidence 7778888899999999999999999999999999999999999999999999999999999999999999975 89998
Q ss_pred hhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecccccccCcchhhccccchhhhhhc
Q psy504 198 LLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLNTWGDRYYLGLNGIELYDEF 277 (358)
Q Consensus 198 ~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~~~g~~~~~gln~~El~~~~ 277 (358)
|||++++| .+|+++||++++++..........+...... +.. . -.++.+++
T Consensus 203 -LTG~~i~a-------~eA~~~GLa~~~v~~~~l~~l~~~l~~~~~~-~~~---------------~-----~~~~l~~~ 253 (407)
T PLN02851 203 -LTGQKLNG-------VEMIACGLATHYCLNARLPLIEERLGKLLTD-DPA---------------V-----IEDSLAQY 253 (407)
T ss_pred -HhCCcCCH-------HHHHHCCCceeecCHhhHHHHHHHHHhhccC-CHH---------------H-----HHHHHHHh
Confidence 99999999 9999999999999876553333333322110 000 0 01233333
Q ss_pred CCcccccccccccCCcccccccCCCCCccChhhhcccccccCCC-CCeeecccC
Q psy504 278 GDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADG-THSWLAPIL 330 (358)
Q Consensus 278 ~~~~~~~~~~~~a~~~~~n~~~~~~~d~r~~~~l~~~~~~t~~~-~~~wl~p~~ 330 (358)
.+........+...-+-|+. |++..|++.+++.+....++ ...|..-.+
T Consensus 254 ~~~~~~~~~~~~~~~~~I~~----~F~~~sv~~I~~~L~~~~~~~~~~wa~~~~ 303 (407)
T PLN02851 254 GDLVYPDKSSVLHKIETIDK----CFGHDTVEEIIEALENEAASSYDEWCKKAL 303 (407)
T ss_pred ccccCCCcccHHHHHHHHHH----HhCCCCHHHHHHHHHhcccccchHHHHHHH
Confidence 22110011222222233444 77888999999888764332 356887655
No 57
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-40 Score=310.87 Aligned_cols=175 Identities=29% Similarity=0.527 Sum_probs=157.4
Q ss_pred ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHH-------H
Q psy504 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRS-------F 116 (358)
Q Consensus 44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~-------~ 116 (358)
.+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++.......... .
T Consensus 9 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (262)
T PRK07509 9 IEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGE-GGAFCAGLDVKSVASSPGNAVKLLFKRLPGN 87 (262)
T ss_pred eeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECC-CCCcCCCcCHHHHhcccchhhhhHhhhhHHH
Confidence 478999999999999999999999999999999999999999999999 78999999999876432211111 1
Q ss_pred HHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhh
Q psy504 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYE 196 (358)
Q Consensus 117 ~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll 196 (358)
...+.+++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++
T Consensus 88 ~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ 167 (262)
T PRK07509 88 ANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELT 167 (262)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHH
Confidence 12345567778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccccccccchhhHhcCCceEEEec
Q psy504 197 DLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIK 228 (358)
Q Consensus 197 ~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~ 228 (358)
|+|++++| ++|+++|||++++.+
T Consensus 168 --ltg~~~~a-------~eA~~~Glv~~vv~~ 190 (262)
T PRK07509 168 --YTARVFSA-------EEALELGLVTHVSDD 190 (262)
T ss_pred --HcCCCcCH-------HHHHHcCChhhhhch
Confidence 99999999 999999999999854
No 58
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.4e-40 Score=312.63 Aligned_cols=177 Identities=28% Similarity=0.406 Sum_probs=157.9
Q ss_pred ecC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHH------HHH
Q psy504 44 ERP-GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQI------RSF 116 (358)
Q Consensus 44 ~~~-~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~------~~~ 116 (358)
.++ +|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|. |++||+|+|++++......+. ..+
T Consensus 11 ~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 89 (272)
T PRK06210 11 VADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGA-GRGFCAGADMGELQTIDPSDGRRDTDVRPF 89 (272)
T ss_pred ECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECC-CCCcccccCHHHHhccCcccccccccchhh
Confidence 466 899999999999999999999999999999999999999999998 789999999998754221100 111
Q ss_pred ----HHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhH
Q psy504 117 ----VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192 (358)
Q Consensus 117 ----~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A 192 (358)
...+++++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus 90 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a 169 (272)
T PRK06210 90 VGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANA 169 (272)
T ss_pred hhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHH
Confidence 1123556778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504 193 ALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS 230 (358)
Q Consensus 193 ~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~ 230 (358)
++|+ |+|++++| ++|+++|||+++++..+
T Consensus 170 ~~l~--ltg~~~~a-------~eA~~~Glv~~vv~~~~ 198 (272)
T PRK06210 170 LDLL--LSARTFYA-------EEALRLGLVNRVVPPDE 198 (272)
T ss_pred HHHH--HcCCccCH-------HHHHHcCCcceecCHHH
Confidence 9999 99999999 99999999999997644
No 59
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=5.1e-40 Score=311.18 Aligned_cols=177 Identities=22% Similarity=0.326 Sum_probs=156.9
Q ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecC-CCceecCCCchhccccC--HHHHHHHHHHHH
Q psy504 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLV-KDVFCAGADLKHRLTLN--EDQIRSFVSTLR 121 (358)
Q Consensus 45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~g-g~~FsaG~Dl~~~~~~~--~~~~~~~~~~~~ 121 (358)
+++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.| +++||+|.|++++.... .+....+.....
T Consensus 19 ~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 97 (278)
T PLN03214 19 PGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQT 97 (278)
T ss_pred CCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHH
Confidence 6899999999985 6999999999999999999999999999999984 27999999999875321 111223333345
Q ss_pred HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceeccc-ccCcccccccccccchhhHHhhhhhhc
Q psy504 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAI-IPGAGGTQRLPRIVGIPLAALYEDLLN 200 (358)
Q Consensus 122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl-~p~~g~s~~L~r~iG~~~A~~ll~~lt 200 (358)
.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|+ +|++|++++|++++|..+|++|+ |+
T Consensus 98 ~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~ll--lt 175 (278)
T PLN03214 98 TFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLL--LR 175 (278)
T ss_pred HHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHH--Hc
Confidence 6778899999999999999999999999999999999999999999999999 59999999999999999999999 99
Q ss_pred ccccccccccccchhhHhcCCceEEEecCCc
Q psy504 201 NDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ 231 (358)
Q Consensus 201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~ 231 (358)
|+++++ ++|+++|||+++++..+.
T Consensus 176 g~~~~a-------~eA~~~Glv~~vv~~~~l 199 (278)
T PLN03214 176 GRLVRP-------AEAKQLGLIDEVVPAAAL 199 (278)
T ss_pred CCccCH-------HHHHHcCCCcEecChHHH
Confidence 999999 999999999999976443
No 60
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.7e-40 Score=307.31 Aligned_cols=175 Identities=29% Similarity=0.445 Sum_probs=157.4
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc--CHH-HHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL--NED-QIRSFVST 119 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~--~~~-~~~~~~~~ 119 (358)
+.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++... ... ....+...
T Consensus 11 ~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 89 (260)
T PRK07827 11 AVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHT-GGTFCAGADLSEAGGGGGDPYDAAVARARE 89 (260)
T ss_pred EeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC-CCCccCCcChHHHhhcccCchhHHHHHHHH
Confidence 3478999999999999999999999999999999999999999999999 7899999999987542 111 12234556
Q ss_pred HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL 199 (358)
Q Consensus 120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l 199 (358)
+.+++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++ ..+|++++ +
T Consensus 90 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~--l 166 (260)
T PRK07827 90 MTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAARYY--L 166 (260)
T ss_pred HHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHHHHH--H
Confidence 67788999999999999999999999999999999999999999999999999999999999999865 56899999 9
Q ss_pred cccccccccccccchhhHhcCCceEEEec
Q psy504 200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIK 228 (358)
Q Consensus 200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~ 228 (358)
+|++++| ++|+++|||++++.+
T Consensus 167 ~g~~~~a-------~eA~~~Glv~~v~~~ 188 (260)
T PRK07827 167 TGEKFGA-------AEAARIGLVTAAADD 188 (260)
T ss_pred hCCccCH-------HHHHHcCCcccchHH
Confidence 9999999 999999999998743
No 61
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1e-39 Score=321.32 Aligned_cols=178 Identities=25% Similarity=0.345 Sum_probs=160.5
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC----HHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQIRSFVS 118 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~----~~~~~~~~~ 118 (358)
+.+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|. |++||+|+|++++.... ......++.
T Consensus 42 e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~-GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~ 120 (401)
T PLN02157 42 EGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGS-GRAFCAGGDIVSLYHLRKRGSPDAIREFFS 120 (401)
T ss_pred EEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECC-CCCccCCcCHHHHHhhccccchHHHHHHHH
Confidence 3478999999999999999999999999999999999999999999999 68999999999875321 112234445
Q ss_pred HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504 119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL 198 (358)
Q Consensus 119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ 198 (358)
..+.+...+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. .|++|+
T Consensus 121 ~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a~~L~-- 197 (401)
T PLN02157 121 SLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LGEYLG-- 197 (401)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HHHHHH--
Confidence 55567788999999999999999999999999999999999999999999999999999999999999996 799999
Q ss_pred hcccccccccccccchhhHhcCCceEEEecCCc
Q psy504 199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQ 231 (358)
Q Consensus 199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~ 231 (358)
|||++++| .+|+++||++++++..+.
T Consensus 198 LTG~~i~A-------~eA~~~GLv~~vVp~~~l 223 (401)
T PLN02157 198 LTGLKLSG-------AEMLACGLATHYIRSEEI 223 (401)
T ss_pred HcCCcCCH-------HHHHHcCCceEEeCHhHH
Confidence 99999999 999999999999987554
No 62
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7e-40 Score=305.70 Aligned_cols=176 Identities=24% Similarity=0.295 Sum_probs=155.5
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-HHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTLR 121 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-~~~~~~~~~~~ 121 (358)
+.+++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++..... ...........
T Consensus 7 ~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~-G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 84 (249)
T PRK07938 7 TPEPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAE-GRGFNAGVDIKELQATPGFTALIDANRGCF 84 (249)
T ss_pred ccCCCEEEEEECCCC-cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECC-CCceecCcCHHHHhhccchhHHHHHHHHHH
Confidence 457899999999998 599999999999999999999999999999998 799999999998754321 22222334456
Q ss_pred HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN 201 (358)
Q Consensus 122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg 201 (358)
.++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++ |++.+|++++|..+|++|+ ++|
T Consensus 85 ~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~--ltg 159 (249)
T PRK07938 85 AAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALF--FTA 159 (249)
T ss_pred HHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHH--HhC
Confidence 67888999999999999999999999999999999999999999999999986 4567899999999999999 999
Q ss_pred cccccccccccchhhHhcCCceEEEecCCcc
Q psy504 202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQP 232 (358)
Q Consensus 202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~ 232 (358)
++++| ++|+++|||+++++..+..
T Consensus 160 ~~~~a-------~eA~~~Glv~~vv~~~~l~ 183 (249)
T PRK07938 160 ATITA-------AELHHFGSVEEVVPRDQLD 183 (249)
T ss_pred CcCCH-------HHHHHCCCccEEeCHHHHH
Confidence 99999 9999999999999864433
No 63
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8e-40 Score=304.25 Aligned_cols=168 Identities=31% Similarity=0.485 Sum_probs=154.2
Q ss_pred ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (358)
Q Consensus 44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l 123 (358)
.+++|++||||||+++|++|.+|+.+|.+++++++++ ++|+|||||. |++||+|.|+++... ...+...+.++
T Consensus 6 ~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~-g~~F~aG~Dl~~~~~-----~~~~~~~~~~~ 78 (243)
T PRK07854 6 RDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQ-GTVFCAGADLSGDVY-----ADDFPDALIEM 78 (243)
T ss_pred EeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECC-CCceecccCCccchh-----HHHHHHHHHHH
Confidence 4789999999999999999999999999999999865 8999999999 799999999985311 12344556678
Q ss_pred HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccc
Q psy504 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDC 203 (358)
Q Consensus 124 ~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~ 203 (358)
+.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+ |+|++
T Consensus 79 ~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~--ltg~~ 156 (243)
T PRK07854 79 LHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML--LGAEK 156 (243)
T ss_pred HHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH--HcCCC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cccccccccchhhHhcCCceEEEe
Q psy504 204 MSSLDTRYMWCTPYRRGLVVTLVI 227 (358)
Q Consensus 204 i~a~~d~~mw~ea~~~GLv~~vv~ 227 (358)
++| ++|+++|||++|+.
T Consensus 157 ~~a-------~eA~~~Glv~~v~~ 173 (243)
T PRK07854 157 LTA-------EQALATGMANRIGT 173 (243)
T ss_pred cCH-------HHHHHCCCcccccC
Confidence 999 99999999999964
No 64
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=1.4e-39 Score=316.28 Aligned_cols=178 Identities=25% Similarity=0.420 Sum_probs=159.0
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC----HHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN----EDQIRSFVS 118 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~----~~~~~~~~~ 118 (358)
+.+++|++||||||+++|+++.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.... ......+..
T Consensus 8 ~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 87 (342)
T PRK05617 8 EVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFR 87 (342)
T ss_pred EEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHH
Confidence 3578999999999999999999999999999999999999999999999548999999999875321 111113444
Q ss_pred HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504 119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL 198 (358)
Q Consensus 119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ 198 (358)
....++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++.| .+|++|+
T Consensus 88 ~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a~~ll-- 164 (342)
T PRK05617 88 EEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-ALGTYLA-- 164 (342)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HHHHHHH--
Confidence 4557788999999999999999999999999999999999999999999999999999999999999877 7899999
Q ss_pred hcccccccccccccchhhHhcCCceEEEecCC
Q psy504 199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS 230 (358)
Q Consensus 199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~ 230 (358)
|||+.++| ++|+++|||+++++..+
T Consensus 165 ltG~~i~A-------~eA~~~GLv~~vv~~~~ 189 (342)
T PRK05617 165 LTGARISA-------ADALYAGLADHFVPSAD 189 (342)
T ss_pred HcCCCCCH-------HHHHHcCCcceecCHHH
Confidence 99999999 99999999999997643
No 65
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.2e-40 Score=306.61 Aligned_cols=200 Identities=26% Similarity=0.399 Sum_probs=165.4
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc--CHHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL--NEDQIRSFVSTL 120 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~--~~~~~~~~~~~~ 120 (358)
+.+++|++||||||+ .|++|.+|+.+|.++++.+++|+++|+|||+|. |++||+|.|++++... .......+....
T Consensus 9 ~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 86 (257)
T PRK06495 9 EVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGA-GKVFCAGADLKGRPDVIKGPGDLRAHNRRT 86 (257)
T ss_pred EeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECC-CCCcccCcCHHhHhhccCCchhHHHHHHHH
Confidence 347899999999998 599999999999999999999999999999998 7899999999987542 112223344556
Q ss_pred HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhc
Q psy504 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLN 200 (358)
Q Consensus 121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~lt 200 (358)
++++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+. |++++|++++|..+|++|+ ++
T Consensus 87 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~ll--l~ 161 (257)
T PRK06495 87 RECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLTRRMM--LT 161 (257)
T ss_pred HHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHHHHHH--Hc
Confidence 678889999999999999999999999999999999999999999999999996 4567899999999999999 99
Q ss_pred ccccccccccccchhhHhcCCceEEEecCCccHHHHHH-HHhhhccccccceecccc
Q psy504 201 NDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL-IVWNYNASIEMSYCGFSL 256 (358)
Q Consensus 201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l-~~~n~~~~~e~~~~gk~L 256 (358)
|++++| ++|+++|||+++++..+.......+ ..+..+++......++.+
T Consensus 162 g~~~~a-------~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l 211 (257)
T PRK06495 162 GYRVPA-------AELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATRLAKDAL 211 (257)
T ss_pred CCeeCH-------HHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999 9999999999999765433333333 333334444444333333
No 66
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=1.6e-39 Score=318.85 Aligned_cols=185 Identities=23% Similarity=0.369 Sum_probs=161.6
Q ss_pred ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH----HHHHHHHHH
Q psy504 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE----DQIRSFVST 119 (358)
Q Consensus 44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~----~~~~~~~~~ 119 (358)
.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|. |++||+|+|++++..... .....++..
T Consensus 15 ~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~-G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~ 93 (381)
T PLN02988 15 EKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGH-GRAFCAGGDVAAVVRDIEQGNWRLGANFFSD 93 (381)
T ss_pred EECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECC-CCCcccCcCHHHHHhhhcccchhHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999 689999999998753211 112233444
Q ss_pred HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL 199 (358)
Q Consensus 120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l 199 (358)
.+.+...+.++|||+||++||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. .+++|+ |
T Consensus 94 ~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~~~l~--L 170 (381)
T PLN02988 94 EYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVG--L 170 (381)
T ss_pred HHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-HHHHHH--H
Confidence 4456778899999999999999999999999999999999999999999999999999999999999997 688998 9
Q ss_pred cccccccccccccchhhHhcCCceEEEecCCccHHHHHHH
Q psy504 200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALI 239 (358)
Q Consensus 200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~ 239 (358)
||++++| .+|+++||++++++..+.......+.
T Consensus 171 TG~~i~a-------~eA~~~GLv~~vv~~~~l~~~~~~la 203 (381)
T PLN02988 171 TGARLDG-------AEMLACGLATHFVPSTRLTALEADLC 203 (381)
T ss_pred cCCCCCH-------HHHHHcCCceEecCHhHHHHHHHHHH
Confidence 9999999 99999999999998755444444443
No 67
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=2e-39 Score=311.42 Aligned_cols=175 Identities=22% Similarity=0.374 Sum_probs=159.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHHHHHHHHHHHH
Q psy504 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFVSTLRYMT 124 (358)
Q Consensus 48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~~~~~~~~~l~ 124 (358)
+++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++... .......+...+++++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 5669999999999999999999999999999999999999999944799999999987542 2223344555567788
Q ss_pred HHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccccc
Q psy504 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCM 204 (358)
Q Consensus 125 ~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i 204 (358)
.++..++|||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++ ++|+++
T Consensus 118 ~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~ll--ltGe~~ 195 (360)
T TIGR03200 118 SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSG--TLCEPW 195 (360)
T ss_pred HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHH--HhCCcC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ccccccccchhhHhcCCceEEEecCCc
Q psy504 205 SSLDTRYMWCTPYRRGLVVTLVIKFSQ 231 (358)
Q Consensus 205 ~a~~d~~mw~ea~~~GLv~~vv~~~~~ 231 (358)
+| ++|+++|||+++++..+.
T Consensus 196 sA-------~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 196 SA-------HKAKRLGIIMDVVPALKV 215 (360)
T ss_pred cH-------HHHHHcCChheecCchhc
Confidence 99 999999999999986553
No 68
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-39 Score=302.98 Aligned_cols=169 Identities=21% Similarity=0.289 Sum_probs=154.2
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 122 (358)
+.+++|++||||||++.|++|.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++.... ...+...++.
T Consensus 5 ~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~-g~~F~aG~Dl~~~~~~~---~~~~~~~~~~ 80 (248)
T PRK06072 5 ESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGE-GRAFCVGADLSEFAPDF---AIDLRETFYP 80 (248)
T ss_pred EEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCCcccCcCHHHHhhhh---HHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999999998 78999999999875321 1233445567
Q ss_pred HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND 202 (358)
Q Consensus 123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~ 202 (358)
++..+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|. +|++++ |+|+
T Consensus 81 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~ll--l~g~ 157 (248)
T PRK06072 81 IIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEIL--VLGG 157 (248)
T ss_pred HHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHH--HhCC
Confidence 7888999999999999999999999999999999999999999999999999999999999999996 899999 9999
Q ss_pred ccccccccccchhhHhcCCceEE
Q psy504 203 CMSSLDTRYMWCTPYRRGLVVTL 225 (358)
Q Consensus 203 ~i~a~~d~~mw~ea~~~GLv~~v 225 (358)
+++| ++|+++|||+.+
T Consensus 158 ~~~a-------~eA~~~Glv~~~ 173 (248)
T PRK06072 158 EFTA-------EEAERWGLLKIS 173 (248)
T ss_pred ccCH-------HHHHHCCCcccc
Confidence 9999 999999999953
No 69
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=7.7e-39 Score=306.50 Aligned_cols=204 Identities=24% Similarity=0.282 Sum_probs=166.0
Q ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCC------CceecCCCchhcccc-------CH-
Q psy504 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK------DVFCAGADLKHRLTL-------NE- 110 (358)
Q Consensus 45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg------~~FsaG~Dl~~~~~~-------~~- 110 (358)
+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.|+ ++||+|+|++++... ..
T Consensus 32 ~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~ 111 (302)
T PRK08321 32 DQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEA 111 (302)
T ss_pred CCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccc
Confidence 6889999999999999999999999999999999999999999999842 699999999875321 00
Q ss_pred H--HHHHHH-HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEc-CCeEEeecceecccccCcccccccccc
Q psy504 111 D--QIRSFV-STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA-SNVRMGLVETKLAIIPGAGGTQRLPRI 186 (358)
Q Consensus 111 ~--~~~~~~-~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~rias-e~a~f~~pe~~lGl~p~~g~s~~L~r~ 186 (358)
+ ...... .....+...+..+|||+||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++|+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~ 191 (302)
T PRK08321 112 DTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQ 191 (302)
T ss_pred cchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHH
Confidence 0 000111 112346677899999999999999999999999999999999 699999999999999999999999999
Q ss_pred cchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504 187 VGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL 257 (358)
Q Consensus 187 iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~ 257 (358)
+|..+|++|+ |||++++| ++|+++|||+++++..+.......+.......++......|.++
T Consensus 192 vG~~~A~~l~--ltG~~~~A-------~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 253 (302)
T PRK08321 192 VGQKFAREIF--FLGRTYSA-------EEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRMLKYAF 253 (302)
T ss_pred hCHHHHHHHH--HcCCccCH-------HHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999 99999999 99999999999998655444444443333344444444444444
No 70
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=8.8e-39 Score=314.39 Aligned_cols=176 Identities=19% Similarity=0.308 Sum_probs=157.7
Q ss_pred ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC--HHHHHHHHHHHH
Q psy504 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN--EDQIRSFVSTLR 121 (358)
Q Consensus 44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~--~~~~~~~~~~~~ 121 (358)
.+++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||. |++||+|+|++++.... ...........+
T Consensus 17 ~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 95 (379)
T PLN02874 17 EKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGA-GRAFSAGGDLKMFYDGRESDDSCLEVVYRMY 95 (379)
T ss_pred EECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECC-CCCccCccCHHHHHhhcccchHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999998 78999999999875321 112223334445
Q ss_pred HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN 201 (358)
Q Consensus 122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg 201 (358)
.+..++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. +|++|+ |||
T Consensus 96 ~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~--ltG 172 (379)
T PLN02874 96 WLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGEYLA--LTG 172 (379)
T ss_pred HHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHHHHH--HcC
Confidence 56778999999999999999999999999999999999999999999999999999999999999885 899999 999
Q ss_pred cccccccccccchhhHhcCCceEEEecCC
Q psy504 202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFS 230 (358)
Q Consensus 202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~ 230 (358)
+++++ .+|+++|||+++++..+
T Consensus 173 ~~i~a-------~eA~~~GLv~~vv~~~~ 194 (379)
T PLN02874 173 ARLNG-------KEMVACGLATHFVPSEK 194 (379)
T ss_pred CcccH-------HHHHHcCCccEEeCHHH
Confidence 99999 99999999999997643
No 71
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-38 Score=303.78 Aligned_cols=183 Identities=25% Similarity=0.324 Sum_probs=156.5
Q ss_pred ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-------------
Q psy504 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE------------- 110 (358)
Q Consensus 44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~------------- 110 (358)
.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|.|++++.....
T Consensus 10 ~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (288)
T PRK08290 10 VAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGA-GKHFSAGHDLGSGTPGRDRDPGPDQHPTLWW 88 (288)
T ss_pred eeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECC-CCccccCCCcccccccccccccccccccccc
Confidence 478999999999999999999999999999999999999999999999 799999999998632110
Q ss_pred -----H----HHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCccccc
Q psy504 111 -----D----QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQ 181 (358)
Q Consensus 111 -----~----~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~ 181 (358)
. ........+..++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+ |+ .+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~~-~~~~ 166 (288)
T PRK08290 89 DGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-PG-VEYF 166 (288)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-Cc-chHH
Confidence 0 01112234456778899999999999999999999999999999999999999999999998 54 4567
Q ss_pred ccccccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504 182 RLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL 238 (358)
Q Consensus 182 ~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l 238 (358)
++++++|..+|++|+ |||+.++| ++|+++|||+++++..+.......+
T Consensus 167 ~l~~~iG~~~A~~ll--ltG~~i~A-------~eA~~~GLV~~vv~~~~l~~~a~~~ 214 (288)
T PRK08290 167 AHPWELGPRKAKELL--FTGDRLTA-------DEAHRLGMVNRVVPRDELEAETLEL 214 (288)
T ss_pred HHHHHhhHHHHHHHH--HcCCCCCH-------HHHHHCCCccEeeCHHHHHHHHHHH
Confidence 789999999999999 99999999 9999999999999764433333333
No 72
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-38 Score=303.89 Aligned_cols=201 Identities=22% Similarity=0.253 Sum_probs=163.6
Q ss_pred ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHH------------
Q psy504 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED------------ 111 (358)
Q Consensus 44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~------------ 111 (358)
.+++|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||+|. |++||+|.|++++......
T Consensus 16 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 94 (302)
T PRK08272 16 VTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGA-GKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQ 94 (302)
T ss_pred eECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcC-CCCcccCcCHHHHhhcccccccccccccccc
Confidence 478999999999999999999999999999999999999999999999 7999999999987532110
Q ss_pred -----------H--HHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcc
Q psy504 112 -----------Q--IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAG 178 (358)
Q Consensus 112 -----------~--~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g 178 (358)
. .......+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|.+|..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~- 173 (302)
T PRK08272 95 AVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPAT- 173 (302)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChH-
Confidence 0 00224456677888999999999999999999999999999999999999999999998656643
Q ss_pred cccccccccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504 179 GTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL 257 (358)
Q Consensus 179 ~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~ 257 (358)
.++++++|..+|++|+ |||++++| ++|+++|||+++++..+......++.......++......|.++
T Consensus 174 --~~~~~~vG~~~A~~ll--ltG~~i~a-------~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K~~l 241 (302)
T PRK08272 174 --GMWAYRLGPQRAKRLL--FTGDCITG-------AQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVKLAV 241 (302)
T ss_pred --HHHHHHhhHHHHHHHH--HcCCccCH-------HHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3578899999999999 99999999 99999999999997654444444443333344444444444333
No 73
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.8e-38 Score=297.23 Aligned_cols=174 Identities=23% Similarity=0.321 Sum_probs=153.4
Q ss_pred ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHH--HHHHHHHHH
Q psy504 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ--IRSFVSTLR 121 (358)
Q Consensus 44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~--~~~~~~~~~ 121 (358)
.+++|++|+||||++.|++|.+|+.+|.++++.++ +++|+|||||. |++||+|+|++++....... .........
T Consensus 10 ~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07112 10 QQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGL-PEVFCFGADFSAIAEKPDAGRADLIDAEPLY 86 (255)
T ss_pred eeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcC-CCCcccCcCHHHHhhccccchhhhhhHHHHH
Confidence 47899999999999999999999999999999998 46999999998 78999999999875422111 111233456
Q ss_pred HHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN 201 (358)
Q Consensus 122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg 201 (358)
.++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++ +.+|++++|..+|++++ ++|
T Consensus 87 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~l~--l~g 163 (255)
T PRK07112 87 DLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAHYMT--LMT 163 (255)
T ss_pred HHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHHHHH--HhC
Confidence 788899999999999999999999999999999999999999999999999999865 46799999999999999 999
Q ss_pred cccccccccccchhhHhcCCceEEEecCC
Q psy504 202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFS 230 (358)
Q Consensus 202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~ 230 (358)
++++| ++|+++|||++++++.+
T Consensus 164 ~~~~a-------~eA~~~Glv~~vv~~~~ 185 (255)
T PRK07112 164 QPVTA-------QQAFSWGLVDAYGANSD 185 (255)
T ss_pred CcccH-------HHHHHcCCCceecCcHH
Confidence 99999 99999999999997543
No 74
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-38 Score=292.29 Aligned_cols=201 Identities=14% Similarity=0.177 Sum_probs=166.5
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 122 (358)
+.+++|++||||||+ .|++|.+|+.+|.++++.++ +++++||++|. |++||+|.|++++... .+....+.....+
T Consensus 8 ~~~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~-g~~F~~G~Dl~~~~~~-~~~~~~~~~~~~~ 82 (229)
T PRK06213 8 TLEDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQ-PGIFSGGFDLKVMTSG-AQAAIALLTAGST 82 (229)
T ss_pred EecCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCC-CCceEcCcCHHHHhcc-hHhHHHHHHHHHH
Confidence 347899999999985 79999999999999999988 56799999999 7999999999987643 2333455566778
Q ss_pred HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCC-eEEeecceecccccCcccccccccccchhhHHhhhhhhcc
Q psy504 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNN 201 (358)
Q Consensus 123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~-a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg 201 (358)
++.++..+|||+||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|+.|++.++++++|...+++++ ++|
T Consensus 83 l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~ll--l~g 160 (229)
T PRK06213 83 LARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAV--INA 160 (229)
T ss_pred HHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHH--HcC
Confidence 889999999999999999999999999999999999999 99999999999998888888899999999999999 999
Q ss_pred cccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504 202 DCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL 257 (358)
Q Consensus 202 ~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~ 257 (358)
++++| ++|+++|||+++++..+......++.......++......|.++
T Consensus 161 ~~~~a-------~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 209 (229)
T PRK06213 161 EMFDP-------EEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHAATKLKV 209 (229)
T ss_pred cccCH-------HHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999 99999999999997644333333333322233444433444433
No 75
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.6e-38 Score=301.25 Aligned_cols=201 Identities=15% Similarity=0.209 Sum_probs=157.3
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchh-ccc----c--CH--HHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH-RLT----L--NE--DQI 113 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~-~~~----~--~~--~~~ 113 (358)
+.+++|++||||||+++|+||.+|+.+|.+++++++.|++||+|||||. |++||+|+|+++ +.. . .. ...
T Consensus 10 ~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~-G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 88 (298)
T PRK12478 10 TTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGA-GRAFSGGYDFGGGFQHWGEAMMTDGRWDPG 88 (298)
T ss_pred eccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECC-CCCcccCcCccccccccchhcccccccCch
Confidence 4579999999999999999999999999999999999999999999999 799999999986 211 0 00 001
Q ss_pred HHH---HH---HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceec-ccccCcccccccccc
Q psy504 114 RSF---VS---TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKL-AIIPGAGGTQRLPRI 186 (358)
Q Consensus 114 ~~~---~~---~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~l-Gl~p~~g~s~~L~r~ 186 (358)
..+ .. ....++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++ |+++ ++++ .++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~~--~~~ 164 (298)
T PRK12478 89 KDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGMW--LYR 164 (298)
T ss_pred hhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhHH--HHH
Confidence 111 01 11235667899999999999999999999999999999999999999999997 8875 3333 356
Q ss_pred cchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceeccccc
Q psy504 187 VGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLL 257 (358)
Q Consensus 187 iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~ 257 (358)
+|..+|++|+ |||++++| ++|+++|||+++++..+.......+.......++......|.++
T Consensus 165 vG~~~A~~ll--ltg~~i~A-------~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l 226 (298)
T PRK12478 165 LSLAKVKWHS--LTGRPLTG-------VQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQAQKLIV 226 (298)
T ss_pred hhHHHHHHHH--HcCCccCH-------HHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999 99999999 99999999999998655444444333322333443333334333
No 76
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.7e-37 Score=315.62 Aligned_cols=246 Identities=17% Similarity=0.183 Sum_probs=191.2
Q ss_pred CcCccccccCCCCCcccccCCCcceeEEEEeeeecCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHH
Q psy504 11 SPARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQAR-------------NALNATLVEEILTAVEAI 77 (358)
Q Consensus 11 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~V~~Itlnrp~~~-------------Nal~~~m~~eL~~~l~~~ 77 (358)
.|...|.+......++....+..+.+..+.+ +++++|++||||||+++ |+|+.+|+.+|.+++..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~ 310 (546)
T TIGR03222 232 RPADAKGVQLTPLERTIDEDGVRYPTVDVAI-DRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHL 310 (546)
T ss_pred CCcCCCceeeeehhhhcccCCcceeeEEEEE-eccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHH
Confidence 4667777888877777777766555544443 45789999999999999 999999999999999999
Q ss_pred H-cCCCceEEEEeecCCCc-eecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee-ccccccCC-ceeeccc
Q psy504 78 R-GDEEVRCVLLRSLVKDV-FCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL-DGSAYGGG-LEMALAC 153 (358)
Q Consensus 78 ~-~d~~vrvVVltg~gg~~-FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav-nG~a~GgG-~~lal~c 153 (358)
+ +|++||+|||||. |+. ||+|+|++.................++++.++..+|||+||+| ||+|+||| ++|+++|
T Consensus 311 ~~~d~~vr~vVl~g~-G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalac 389 (546)
T TIGR03222 311 RTNELDIGLWVFRTQ-GDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAA 389 (546)
T ss_pred hhCCCCeEEEEEEcC-CCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhC
Confidence 8 4599999999998 666 9999999843321211122333445668889999999999999 89999999 9999999
Q ss_pred cEEEE-------cCCeEEeecceecccccCccccccccccc-chhhH--HhhhhhhcccccccccccccchhhHhcCCce
Q psy504 154 DIRVA-------ASNVRMGLVETKLAIIPGAGGTQRLPRIV-GIPLA--ALYEDLLNNDCMSSLDTRYMWCTPYRRGLVV 223 (358)
Q Consensus 154 D~ria-------se~a~f~~pe~~lGl~p~~g~s~~L~r~i-G~~~A--~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~ 223 (358)
|+||| +++++|++||+++|++|++|++++|++++ |..+| ++++ +||++++| ++|+++|||+
T Consensus 390 D~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~--ltg~~i~A-------~eA~~~Glv~ 460 (546)
T TIGR03222 390 DRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRD--KIGQALDA-------EEAERLGLVT 460 (546)
T ss_pred ceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHH--HhCCCCCH-------HHHHHcCCcc
Confidence 99999 89999999999999999999999999998 99999 5588 99999999 9999999999
Q ss_pred EEEecCCccHHHHHHHHh-hhccccccceecccccccCcchhhcc
Q psy504 224 TLVIKFSQPVHISALIVW-NYNASIEMSYCGFSLLNTWGDRYYLG 267 (358)
Q Consensus 224 ~vv~~~~~~~~~~~l~~~-n~~~~~e~~~~gk~L~~~~g~~~~~g 267 (358)
++++..+.......+... ..+++......+..+...+......+
T Consensus 461 ~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~ 505 (546)
T TIGR03222 461 AAPDDIDWEDEIRIALEERASFSPDALTGLEANLRFAGPETMETR 505 (546)
T ss_pred cccCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcChhhh
Confidence 999775543333333222 22344344434444444444444443
No 77
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.8e-37 Score=325.74 Aligned_cols=180 Identities=34% Similarity=0.536 Sum_probs=163.9
Q ss_pred eeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHHHHH
Q psy504 41 NSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSFV 117 (358)
Q Consensus 41 l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~~~~ 117 (358)
++..+++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||. |++||+|+|++++... .......+.
T Consensus 10 ~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 88 (715)
T PRK11730 10 VDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSA-KDAFIVGADITEFLSLFAAPEEELSQWL 88 (715)
T ss_pred EEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECC-CCccccCcCHHHHhhhccCCHHHHHHHH
Confidence 333478999999999999999999999999999999999999999999999 7899999999987542 222234555
Q ss_pred HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhh
Q psy504 118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYED 197 (358)
Q Consensus 118 ~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~ 197 (358)
...++++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|+
T Consensus 89 ~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~ll- 167 (715)
T PRK11730 89 HFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWI- 167 (715)
T ss_pred HHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHH-
Confidence 6667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccccccchhhHhcCCceEEEecCC
Q psy504 198 LLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS 230 (358)
Q Consensus 198 ~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~ 230 (358)
+||++++| ++|+++|||+++++..+
T Consensus 168 -ltG~~~~A-------~eA~~~GLv~~vv~~~~ 192 (715)
T PRK11730 168 -AAGKDVRA-------EDALKVGAVDAVVAPEK 192 (715)
T ss_pred -HcCCcCCH-------HHHHHCCCCeEecCHHH
Confidence 99999999 99999999999997644
No 78
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=4.6e-37 Score=284.97 Aligned_cols=173 Identities=20% Similarity=0.287 Sum_probs=151.3
Q ss_pred ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCce-EEEEeecCCCceecCCCchhcccc--CHHHHHHHHHHH
Q psy504 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVR-CVLLRSLVKDVFCAGADLKHRLTL--NEDQIRSFVSTL 120 (358)
Q Consensus 44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr-vVVltg~gg~~FsaG~Dl~~~~~~--~~~~~~~~~~~~ 120 (358)
.+++|++|+||||++ |+|+.+|+.+|.+++++++.|++++ +||++|. |++||+|+|++++... .......+...+
T Consensus 6 ~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 83 (239)
T PLN02267 6 KRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAE-GKFFSNGFDLAWAQAAGSAPSRLHLMVAKL 83 (239)
T ss_pred ecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCC-CCceeCCcCHHHHhccccCHHHHHHHHHHH
Confidence 478999999999985 9999999999999999999999875 6777887 7899999999986532 122223344566
Q ss_pred HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEc-CCeEEeecceecccc-cCcccccccccccchhhH-Hhhhh
Q psy504 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA-SNVRMGLVETKLAII-PGAGGTQRLPRIVGIPLA-ALYED 197 (358)
Q Consensus 121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~rias-e~a~f~~pe~~lGl~-p~~g~s~~L~r~iG~~~A-~~ll~ 197 (358)
.+++.++.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++ |++ ++.+|++++|..+| ++++
T Consensus 84 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~-~~~~l~~~vG~~~a~~~ll- 161 (239)
T PLN02267 84 RPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDY-FMALLRAKIGSPAARRDVL- 161 (239)
T ss_pred HHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChH-HHHHHHHHcChHHHHHHHH-
Confidence 778889999999999999999999999999999999998 578999999999997 555 47899999999999 6898
Q ss_pred hhcccccccccccccchhhHhcCCceEEEec
Q psy504 198 LLNNDCMSSLDTRYMWCTPYRRGLVVTLVIK 228 (358)
Q Consensus 198 ~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~ 228 (358)
++|++++| ++|+++|+|+++++.
T Consensus 162 -ltG~~~~a-------~eA~~~Glv~~vv~~ 184 (239)
T PLN02267 162 -LRAAKLTA-------EEAVEMGIVDSAHDS 184 (239)
T ss_pred -HcCCcCCH-------HHHHHCCCcceecCC
Confidence 99999999 999999999999974
No 79
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=4.3e-37 Score=313.59 Aligned_cols=248 Identities=15% Similarity=0.127 Sum_probs=193.5
Q ss_pred CcCccccccCCCCCcccccCCCcceeEEEEeeeecCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHH
Q psy504 11 SPARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQAR-------------NALNATLVEEILTAVEAI 77 (358)
Q Consensus 11 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~V~~Itlnrp~~~-------------Nal~~~m~~eL~~~l~~~ 77 (358)
.|.+.|.+...+..++....|-.+....+.+ +.+++|++||||||+++ |+|+.+|+.+|.++++.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~ 314 (550)
T PRK08184 236 RPADAKGVALTPLERTIDADGLRYRHVDVEI-DRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHL 314 (550)
T ss_pred CCCCCCccccccccccccCCceeeEEEEEEE-EccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHH
Confidence 4566788888999999888886554444443 34789999999999988 689999999999999999
Q ss_pred Hc-CCCceEEEEeecCC-CceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeec-cccccCC-ceeeccc
Q psy504 78 RG-DEEVRCVLLRSLVK-DVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD-GSAYGGG-LEMALAC 153 (358)
Q Consensus 78 ~~-d~~vrvVVltg~gg-~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavn-G~a~GgG-~~lal~c 153 (358)
+. |+++|+|||||. | ++||+|+|++.................+.++.++..+|||+||+|| |+|+||| ++|+++|
T Consensus 315 ~~~d~~vr~vVltg~-G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalac 393 (550)
T PRK08184 315 RTNELDIGTWVLKTE-GDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAA 393 (550)
T ss_pred HhcCCCeEEEEEEcC-CCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHC
Confidence 86 799999999998 6 5999999987432211111123334456678899999999999997 9999999 9999999
Q ss_pred cEEEEc-------CCeEEeecceecccccCcccccccccc-cchhhHHhhhhhhcccccccccccccchhhHhcCCceEE
Q psy504 154 DIRVAA-------SNVRMGLVETKLAIIPGAGGTQRLPRI-VGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTL 225 (358)
Q Consensus 154 D~rias-------e~a~f~~pe~~lGl~p~~g~s~~L~r~-iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~v 225 (358)
|+|||+ ++++|++||+++|++|++|++++|+|+ +|..+|++++.+++|++++| ++|+++|||+++
T Consensus 394 D~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A-------~eA~~~GLv~~v 466 (550)
T PRK08184 394 DRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDA-------DAAEELGLVTAA 466 (550)
T ss_pred ChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCH-------HHHHHcCCcccc
Confidence 999999 999999999999999999999999998 79999999732389999999 999999999999
Q ss_pred EecCCccHHHHHHHHh-hhccccccceecccccccCcchhhcc
Q psy504 226 VIKFSQPVHISALIVW-NYNASIEMSYCGFSLLNTWGDRYYLG 267 (358)
Q Consensus 226 v~~~~~~~~~~~l~~~-n~~~~~e~~~~gk~L~~~~g~~~~~g 267 (358)
+++.+.......+... ..+++......+..+...+......+
T Consensus 467 v~~~~l~~~a~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~ 509 (550)
T PRK08184 467 PDDIDWEDEVRIALEERASLSPDALTGMEANLRFAGPETMETR 509 (550)
T ss_pred cChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 9875543333333322 23444444444555555554444444
No 80
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=1.2e-36 Score=320.61 Aligned_cols=181 Identities=32% Similarity=0.505 Sum_probs=164.6
Q ss_pred EeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc---CHHHHHHH
Q psy504 40 HNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL---NEDQIRSF 116 (358)
Q Consensus 40 ~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~---~~~~~~~~ 116 (358)
.++..+++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||||. +++||+|+|++++... ...+...+
T Consensus 9 ~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 87 (714)
T TIGR02437 9 QVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSG-KDAFIVGADITEFLGLFALPDAELIQW 87 (714)
T ss_pred EEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCccccCcCHHHHhhcccCCHHHHHHH
Confidence 3444578999999999999999999999999999999999999999999998 7899999999988542 22233345
Q ss_pred HHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhh
Q psy504 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYE 196 (358)
Q Consensus 117 ~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll 196 (358)
.+..++++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|+
T Consensus 88 ~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~ll 167 (714)
T TIGR02437 88 LLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWI 167 (714)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 55677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504 197 DLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS 230 (358)
Q Consensus 197 ~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~ 230 (358)
++|++++| ++|+++|||+++++..+
T Consensus 168 --ltG~~~~A-------~eA~~~GLvd~vv~~~~ 192 (714)
T TIGR02437 168 --ASGKENRA-------EDALKVGAVDAVVTADK 192 (714)
T ss_pred --HcCCcCCH-------HHHHHCCCCcEeeChhH
Confidence 99999999 99999999999997543
No 81
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=2.6e-36 Score=270.67 Aligned_cols=176 Identities=41% Similarity=0.703 Sum_probs=166.3
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHH--HHHHHHHH
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ--IRSFVSTL 120 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~--~~~~~~~~ 120 (358)
+++++|++|+||+|++.|++|.+|+++|.++++.++.|+++++|||||. ++.||+|.|++++....... ...+.+.+
T Consensus 4 ~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~-~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~ 82 (195)
T cd06558 4 ERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGA-GKAFCAGADLKELAALSDAGEEARAFIREL 82 (195)
T ss_pred EEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECC-CCceEeCcCHHHHhcccccchhHHHHHHHH
Confidence 4567999999999999999999999999999999999999999999998 89999999999987765443 56788888
Q ss_pred HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhc
Q psy504 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLN 200 (358)
Q Consensus 121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~lt 200 (358)
++++.++..++||+||++||+|.|+|++++++||+||++++++|++||+++|++|+.|++++|++++|...+++++ ++
T Consensus 83 ~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~--l~ 160 (195)
T cd06558 83 QELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL--LT 160 (195)
T ss_pred HHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH--Hc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ccccccccccccchhhHhcCCceEEEec
Q psy504 201 NDCMSSLDTRYMWCTPYRRGLVVTLVIK 228 (358)
Q Consensus 201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~ 228 (358)
|+++++ .+|++.|+++++++.
T Consensus 161 g~~~~a-------~ea~~~Glv~~~~~~ 181 (195)
T cd06558 161 GRRISA-------EEALELGLVDEVVPD 181 (195)
T ss_pred CCccCH-------HHHHHcCCCCeecCh
Confidence 999999 999999999999986
No 82
>KOG1681|consensus
Probab=100.00 E-value=6e-37 Score=271.54 Aligned_cols=223 Identities=22% Similarity=0.363 Sum_probs=182.6
Q ss_pred eecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC------------H
Q psy504 43 PERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN------------E 110 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~------------~ 110 (358)
..++.|..+.||||.|+|+|+..|+.|+.++++.+.+||++|+|||.|. |+.||+|+|+..+.... .
T Consensus 27 ~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~-GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g 105 (292)
T KOG1681|consen 27 SAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGA-GKHFCAGIDLNDMASDRILQPEGDDVARKG 105 (292)
T ss_pred CCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecC-CcceecccCcchhhhhhccccccchHhhhh
Confidence 4567799999999999999999999999999999999999999999999 89999999987664320 1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccc-h
Q psy504 111 DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG-I 189 (358)
Q Consensus 111 ~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG-~ 189 (358)
...++.+..+++-+..|.+||||+|++|+|+|+|+|+.|..+||+|||+++|.|+.-|+.+|+..+.|...+||..+| .
T Consensus 106 ~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~ 185 (292)
T KOG1681|consen 106 RSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQ 185 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcch
Confidence 125567778889999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred hhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCcc-HHHHHHHH-hhhccccccceecccccccCcchhhcc
Q psy504 190 PLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQP-VHISALIV-WNYNASIEMSYCGFSLLNTWGDRYYLG 267 (358)
Q Consensus 190 ~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~-~~~~~l~~-~n~~~~~e~~~~gk~L~~~~g~~~~~g 267 (358)
+.++++. +|++.|+| .||++.|||++|+++.++- .....+.. ...+.++...-++..|..........+
T Consensus 186 s~~~ela--fTar~f~a-------~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~s 256 (292)
T KOG1681|consen 186 SLARELA--FTARKFSA-------DEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQGTKENLLYSREHSVEES 256 (292)
T ss_pred HHHHHHH--hhhhhcch-------hhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeeechHHHHHHHhhhhhhhh
Confidence 9999999 99999999 8999999999999874422 11112221 123444444434445555555555555
Q ss_pred ccchhhhh
Q psy504 268 LNGIELYD 275 (358)
Q Consensus 268 ln~~El~~ 275 (358)
||..-..|
T Consensus 257 LnyvatwN 264 (292)
T KOG1681|consen 257 LNYVATWN 264 (292)
T ss_pred HHHHHHHH
Confidence 55544444
No 83
>KOG0016|consensus
Probab=100.00 E-value=2.4e-36 Score=273.36 Aligned_cols=225 Identities=23% Similarity=0.246 Sum_probs=197.6
Q ss_pred eeeecCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHH-------
Q psy504 41 NSPERPGIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ------- 112 (358)
Q Consensus 41 l~~~~~~V~~Itln-rp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~------- 112 (358)
+.++++++.+|.+| ||++.|+++.+|+.++.++++.+.+|+++..++++|. |++||+|.|++.+......+
T Consensus 10 vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~-G~~f~sG~Df~~~~~~~~~d~~~~~~~ 88 (266)
T KOG0016|consen 10 VVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSN-GSYFCSGLDFSPFAKALDDDANEESDK 88 (266)
T ss_pred EEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecC-ccEEeeccccchhhhcCCCcccccchh
Confidence 44558999999999 9999999999999999999999999999999999998 89999999999886543322
Q ss_pred HHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhH
Q psy504 113 IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192 (358)
Q Consensus 113 ~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A 192 (358)
...+...+......+..+|||+||.|||+|+|.|+.+...||+++|+|+++|..|++.+|+.|++|++++||+++|...|
T Consensus 89 ~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A 168 (266)
T KOG0016|consen 89 ASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGSASA 168 (266)
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhchhhH
Confidence 22233444457889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecccccccCcchhhccccchh
Q psy504 193 ALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLNTWGDRYYLGLNGIE 272 (358)
Q Consensus 193 ~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~~~g~~~~~gln~~E 272 (358)
.||+ |.|++++| .||++.|||+++++.......+....+.....++++....|.|++..-...+...|..|
T Consensus 169 ~E~l--l~~~kltA-------~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E 239 (266)
T KOG0016|consen 169 NEML--LFGEKLTA-------QEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEE 239 (266)
T ss_pred HHHH--HhCCcccH-------HHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999 99999999 99999999999998866656555555555667788888899999888788888888888
Q ss_pred hhh
Q psy504 273 LYD 275 (358)
Q Consensus 273 l~~ 275 (358)
+--
T Consensus 240 ~~~ 242 (266)
T KOG0016|consen 240 CNV 242 (266)
T ss_pred HHH
Confidence 755
No 84
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=5.7e-36 Score=315.76 Aligned_cols=181 Identities=30% Similarity=0.538 Sum_probs=162.3
Q ss_pred eeeecCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccC-HHHHHHHHH
Q psy504 41 NSPERPGIVELCMNRP-QARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN-EDQIRSFVS 118 (358)
Q Consensus 41 l~~~~~~V~~Itlnrp-~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~-~~~~~~~~~ 118 (358)
++..+++|++|+|||| ++.|+||.+|+.+|.+++++++.|+++|+|||+|.++++||+|+|++++.... ......+..
T Consensus 9 ~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 88 (708)
T PRK11154 9 LNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALAR 88 (708)
T ss_pred EEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHH
Confidence 3444789999999999 68999999999999999999999999999999997668999999999875432 222334445
Q ss_pred HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCC--eEEeecceecccccCcccccccccccchhhHHhhh
Q psy504 119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYE 196 (358)
Q Consensus 119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~--a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll 196 (358)
..++++.++.++|||+||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|..+|++|+
T Consensus 89 ~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~ll 168 (708)
T PRK11154 89 QGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMI 168 (708)
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHH
Confidence 5677889999999999999999999999999999999999986 59999999999999999999999999999999999
Q ss_pred hhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504 197 DLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS 230 (358)
Q Consensus 197 ~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~ 230 (358)
++|++++| ++|+++|||+++++..+
T Consensus 169 --ltG~~i~a-------~eA~~~GLv~~vv~~~~ 193 (708)
T PRK11154 169 --LTGKQLRA-------KQALKLGLVDDVVPHSI 193 (708)
T ss_pred --HhCCcCCH-------HHHHHCCCCcEecChHH
Confidence 99999999 99999999999997644
No 85
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=1.2e-35 Score=312.73 Aligned_cols=179 Identities=31% Similarity=0.566 Sum_probs=160.9
Q ss_pred eeecCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEe-ecCCCceecCCCchhccccC-HHHHHHHHH
Q psy504 42 SPERPGIVELCMNRP-QARNALNATLVEEILTAVEAIRGDEEVRCVLLR-SLVKDVFCAGADLKHRLTLN-EDQIRSFVS 118 (358)
Q Consensus 42 ~~~~~~V~~Itlnrp-~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVlt-g~gg~~FsaG~Dl~~~~~~~-~~~~~~~~~ 118 (358)
+..+++|++|||||| ++.|+||.+|+.+|.+++++++.|+++|+|||+ |. |++||+|+|++++.... ..+...+..
T Consensus 5 ~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~-g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 83 (699)
T TIGR02440 5 TVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGK-PDNFIAGADISMLAACQTAGEAKALAQ 83 (699)
T ss_pred EEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCceeeccCchhhhccCChhHHHHHHH
Confidence 445789999999999 689999999999999999999999999999975 55 78999999999875422 223334455
Q ss_pred HHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCC--eEEeecceecccccCcccccccccccchhhHHhhh
Q psy504 119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYE 196 (358)
Q Consensus 119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~--a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll 196 (358)
..+.++..+.++|||+||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++|..+|++|+
T Consensus 84 ~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~ll 163 (699)
T TIGR02440 84 QGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMI 163 (699)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHH
Confidence 6677888999999999999999999999999999999999976 79999999999999999999999999999999999
Q ss_pred hhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504 197 DLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS 230 (358)
Q Consensus 197 ~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~ 230 (358)
++|+.++| ++|+++|||+++++..+
T Consensus 164 --ltG~~~~a-------~eA~~~GLV~~vv~~~~ 188 (699)
T TIGR02440 164 --LTGKQLRA-------KQALKLGLVDDVVPQSI 188 (699)
T ss_pred --HcCCcCCH-------HHHHhCCCCcEecChhH
Confidence 99999999 99999999999997644
No 86
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=1.9e-35 Score=312.13 Aligned_cols=175 Identities=29% Similarity=0.506 Sum_probs=159.4
Q ss_pred ecCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEE-EEeecCCCceecCCCchhcccc-CHHHHHHHHHHH
Q psy504 44 ERPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCV-LLRSLVKDVFCAGADLKHRLTL-NEDQIRSFVSTL 120 (358)
Q Consensus 44 ~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vrvV-Vltg~gg~~FsaG~Dl~~~~~~-~~~~~~~~~~~~ 120 (358)
.+++|++|+||||+ +.|+||.+|+.+|.++++.++.|+++|++ |++|. |++||+|+|++++... ..++...+....
T Consensus 19 ~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 97 (737)
T TIGR02441 19 VKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGK-PGSFVAGADIQMIAACKTAQEVTQLSQEG 97 (737)
T ss_pred EECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECC-CCcceeCcCHHHHhccCChHHHHHHHHHH
Confidence 37899999999998 58999999999999999999999999975 56888 7899999999998642 223344555667
Q ss_pred HHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCC--eEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504 121 RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL 198 (358)
Q Consensus 121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~--a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ 198 (358)
++++.++.++|||+||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++|..+|++|+
T Consensus 98 ~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~-- 175 (737)
T TIGR02441 98 QEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMM-- 175 (737)
T ss_pred HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHH--
Confidence 78899999999999999999999999999999999999987 58999999999999999999999999999999999
Q ss_pred hcccccccccccccchhhHhcCCceEEEec
Q psy504 199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIK 228 (358)
Q Consensus 199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~ 228 (358)
++|++++| ++|+++|||+++++.
T Consensus 176 ltG~~i~a-------~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 176 LTGKKIRA-------DRAKKMGIVDQLVDP 198 (737)
T ss_pred HcCCcCCH-------HHHHHCCCCeEecCC
Confidence 99999999 999999999999975
No 87
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=9.5e-35 Score=295.55 Aligned_cols=182 Identities=25% Similarity=0.310 Sum_probs=155.3
Q ss_pred ecCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHH-cCCCceEEEEeecCCCceecCCCchhccccCHHH
Q psy504 44 ERPGIVELCMNRPQ----------ARNALNATLVEEILTAVEAIR-GDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ 112 (358)
Q Consensus 44 ~~~~V~~Itlnrp~----------~~Nal~~~m~~eL~~~l~~~~-~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~ 112 (358)
.+++|++|+||||+ ++|+||.+|+.+|.++++.++ .|+++|+|||||.+|++||+|.|++++.......
T Consensus 17 ~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~ 96 (546)
T TIGR03222 17 FDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAW 96 (546)
T ss_pred eeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccch
Confidence 46889999999975 899999999999999999999 7999999999997678999999999875321111
Q ss_pred HH---HHH-HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCC--eEEeeccee-cccccCcccccccc-
Q psy504 113 IR---SFV-STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETK-LAIIPGAGGTQRLP- 184 (358)
Q Consensus 113 ~~---~~~-~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~--a~f~~pe~~-lGl~p~~g~s~~L~- 184 (358)
.. ... .....+...+..+|||+||+|||+|+|||++|+++||+||++++ ++|++||++ +|++|++|++.+++
T Consensus 97 ~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~ 176 (546)
T TIGR03222 97 KVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTD 176 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccc
Confidence 11 111 11233556778999999999999999999999999999999986 799999997 99999999999998
Q ss_pred -cccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHH
Q psy504 185 -RIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVH 234 (358)
Q Consensus 185 -r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~ 234 (358)
+++|..+|++|+ |+|++++| ++|+++|||+++++..+....
T Consensus 177 ~~~vg~~~A~~ll--ltG~~i~A-------~eA~~~GLV~~vv~~~~l~~~ 218 (546)
T TIGR03222 177 KRRVRRDHADIFC--TIEEGVRG-------KRAKEWRLVDEVVKPSQFDAA 218 (546)
T ss_pred cchhCHHHHHHHH--HcCCCccH-------HHHHHcCCceEEeChHHHHHH
Confidence 689999999999 99999999 999999999999986544333
No 88
>KOG1684|consensus
Probab=100.00 E-value=1.9e-34 Score=270.83 Aligned_cols=257 Identities=21% Similarity=0.296 Sum_probs=215.5
Q ss_pred EEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhcccc----CHHHHH
Q psy504 39 YHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL----NEDQIR 114 (358)
Q Consensus 39 ~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~----~~~~~~ 114 (358)
..+.+..+...+||||||+.+||+|.+|...+.-.+..++.++.+++||+.|.++++||+|+|++..... ......
T Consensus 39 ~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~ 118 (401)
T KOG1684|consen 39 QVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVK 118 (401)
T ss_pred ceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHH
Confidence 3455567889999999999999999999999999999999999999999999999999999999865433 234567
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHh
Q psy504 115 SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAAL 194 (358)
Q Consensus 115 ~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ 194 (358)
.++...+.+...+.++.||.||.++|..+|||+.|+.+.-||||+|++.|.+||+.+|++|+.|++++|+|+.| ..+.+
T Consensus 119 ~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg~Y 197 (401)
T KOG1684|consen 119 KFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YLGLY 197 (401)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988 77888
Q ss_pred hhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecccccccCcchhhccccchhhh
Q psy504 195 YEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLNTWGDRYYLGLNGIELY 274 (358)
Q Consensus 195 ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk~L~~~~g~~~~~gln~~El~ 274 (358)
+. |||.++++ .+|+..||.++.|+....+.-..++.+ +.+.+++.. -.|..
T Consensus 198 Lg--LTG~rl~G-------aD~~~~GlATHyv~S~~l~~Lee~L~~-~l~~dp~~~-------------------I~~~l 248 (401)
T KOG1684|consen 198 LG--LTGQRLSG-------ADALRCGLATHYVPSEKLPSLEERLLK-NLNDDPQSV-------------------INETL 248 (401)
T ss_pred hh--hccceecc-------hHHHHhcchhhccchhhhhHHHHHHhh-hcCCCcHHH-------------------HHHHH
Confidence 88 99999999 899999999999998888777777763 444444211 12556
Q ss_pred hhcCCcccccccccccCCcccccccCCCCCccChhhhcccc---cccCCCCCeeecccC
Q psy504 275 DEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGV---NNIADGTHSWLAPIL 330 (358)
Q Consensus 275 ~~~~~~~~~~~~~~~a~~~~~n~~~~~~~d~r~~~~l~~~~---~~t~~~~~~wl~p~~ 330 (358)
.++++..+-........++-||. |+...|++++|+.+ +. ..+...|.--.+
T Consensus 249 ~~y~~~~~~~~~~~~~~~~~i~~----~Fs~~tVeeIie~lk~~q~-~~~~~ewak~tl 302 (401)
T KOG1684|consen 249 EKYASPAKDESFSLSLKLDVINK----CFSANTVEEIIEALKNYQQ-SADGSEWAKETL 302 (401)
T ss_pred HHhcccCCCccccchhhHHHHHH----hhccccHHHHHHHHHHHhh-hhhHHHHHHHHH
Confidence 66666554444555556777777 88888999999944 33 455667765544
No 89
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=5.6e-34 Score=290.75 Aligned_cols=178 Identities=25% Similarity=0.330 Sum_probs=152.7
Q ss_pred ecCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHH-cCCCceEEEEeecCCCceecCCCchhccccCHHH
Q psy504 44 ERPGIVELCMNRP-------Q---ARNALNATLVEEILTAVEAIR-GDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQ 112 (358)
Q Consensus 44 ~~~~V~~Itlnrp-------~---~~Nal~~~m~~eL~~~l~~~~-~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~ 112 (358)
.+++|++|+|||| + +.|+|+.+|+.+|.+++++++ +|+++|+|||||.++++||+|.|++++.....+.
T Consensus 21 ~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~ 100 (550)
T PRK08184 21 FDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAW 100 (550)
T ss_pred eeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccch
Confidence 3689999999965 3 899999999999999999999 7899999999998668999999999875422111
Q ss_pred HH---HHHHH-HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCC--eEEeeccee-cccccCcccccccc-
Q psy504 113 IR---SFVST-LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETK-LAIIPGAGGTQRLP- 184 (358)
Q Consensus 113 ~~---~~~~~-~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~--a~f~~pe~~-lGl~p~~g~s~~L~- 184 (358)
.. ..... ...+...+..+|||+||+|||+|+|||++|+++||+||++++ ++|++||++ +|++|++|++++|+
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~ 180 (550)
T PRK08184 101 KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTD 180 (550)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhh
Confidence 11 11111 122455778999999999999999999999999999999987 899999997 99999999999998
Q ss_pred -cccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504 185 -RIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS 230 (358)
Q Consensus 185 -r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~ 230 (358)
+++|..+|++++ ++|+.++| ++|+++|||+++++..+
T Consensus 181 ~~~vg~~~A~~ll--ltG~~i~A-------eeA~~~GLVd~vv~~d~ 218 (550)
T PRK08184 181 KRKVRRDLADIFC--TIEEGVRG-------KRAVDWRLVDEVVKPSK 218 (550)
T ss_pred hhhcCHHHHHHHH--HhCCcccH-------HHHHHcCCccEeeCHHH
Confidence 779999999999 99999999 99999999999997643
No 90
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=99.97 E-value=6.2e-32 Score=238.06 Aligned_cols=196 Identities=27% Similarity=0.383 Sum_probs=163.6
Q ss_pred eeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeec--CCCceecCCCchhcccc----CHHHHHH
Q psy504 42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL--VKDVFCAGADLKHRLTL----NEDQIRS 115 (358)
Q Consensus 42 ~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~--gg~~FsaG~Dl~~~~~~----~~~~~~~ 115 (358)
+...++|+.|++|||+++|++.+..+.||.+++..+..|++|.+|+|||. |+.+||+|+|-+.-... .++...
T Consensus 23 ~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~- 101 (282)
T COG0447 23 EKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIP- 101 (282)
T ss_pred eeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCc-
Confidence 33347999999999999999999999999999999999999999999975 78999999998754331 111111
Q ss_pred HHHHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhh
Q psy504 116 FVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALY 195 (358)
Q Consensus 116 ~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~l 195 (358)
.-....+.+.|+.+||||||.|+|+|+|||-.|-+.||+.||+++|+|+....++|-+-++.++..|.|.+|..+|+|+
T Consensus 102 -rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEI 180 (282)
T COG0447 102 -RLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREI 180 (282)
T ss_pred -ccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhhhhhHHh
Confidence 1134456678899999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred hhhhcccccccccccccchhhHhcCCceEEEecCCccHH-HHHHHHhhhccccc
Q psy504 196 EDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVH-ISALIVWNYNASIE 248 (358)
Q Consensus 196 l~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~-~~~l~~~n~~~~~e 248 (358)
- +.++..+| ++|+++|+|+.||+..+...+ +...+..+.+++..
T Consensus 181 w--fLcR~Y~A-------~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~A 225 (282)
T COG0447 181 W--FLCRQYDA-------EEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTA 225 (282)
T ss_pred h--hhhhhccH-------HHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHH
Confidence 8 99999999 999999999999987654433 33333333344433
No 91
>KOG1682|consensus
Probab=99.96 E-value=1.9e-29 Score=220.37 Aligned_cols=184 Identities=23% Similarity=0.355 Sum_probs=165.9
Q ss_pred ecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCH-HHHHHHHHHHHH
Q psy504 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE-DQIRSFVSTLRY 122 (358)
Q Consensus 44 ~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~-~~~~~~~~~~~~ 122 (358)
.+++|-.|+|++|+++|.|+.+|+.+|.+.+....++.++|+|||+.. |+.||+|.||+++.+... +...+.++...+
T Consensus 38 ~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~-GkifSaGH~LKELt~e~g~d~haevFqtc~d 116 (287)
T KOG1682|consen 38 EHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQ-GKIFSAGHNLKELTNEPGSDIHAEVFQTCTD 116 (287)
T ss_pred cccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecC-CccccccccHHHhhcCccchHHHHHHHHHHH
Confidence 358999999999999999999999999999999999999999999999 899999999999987543 234566778888
Q ss_pred HHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccc
Q psy504 123 MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNND 202 (358)
Q Consensus 123 l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~ 202 (358)
++.-|+++|+|+|+-|||+|.++||.|...||++||+++++|..|...+|++...-| ..|.|.+++..|.+|+ +||.
T Consensus 117 vmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPG-vAlaRavpRkva~~ML--~Tg~ 193 (287)
T KOG1682|consen 117 VMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPG-VALARAVPRKVAAYML--MTGL 193 (287)
T ss_pred HHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcc-hhHhhhcchhHHHHHH--HhCC
Confidence 999999999999999999999999999999999999999999999999999876544 4688999999999999 9999
Q ss_pred ccccccccccchhhHhcCCceEEEecCCccHHHHHH
Q psy504 203 CMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISAL 238 (358)
Q Consensus 203 ~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l 238 (358)
++++ ++|+..||++++|+..+...++..+
T Consensus 194 Pi~~-------eeAl~sGlvskvVp~~el~~e~~~i 222 (287)
T KOG1682|consen 194 PITG-------EEALISGLVSKVVPAEELDKEIEEI 222 (287)
T ss_pred CCch-------HHHHHhhhhhhcCCHHHHHHHHHHH
Confidence 9999 9999999999999987665554444
No 92
>PF14652 DUF4457: Domain of unknown function (DUF4457)
Probab=99.94 E-value=6.5e-28 Score=232.74 Aligned_cols=156 Identities=42% Similarity=0.733 Sum_probs=139.1
Q ss_pred chhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHhhhccccccceecc-------------
Q psy504 188 GIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGF------------- 254 (358)
Q Consensus 188 G~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~n~~~~~e~~~~gk------------- 254 (358)
+..+...-| +-|..++. ++.|||..++..|.-+.++..+..+..++++++||||++.+.++.|.
T Consensus 51 ~d~r~l~~L--idg~~~T~-d~~~MWl~pf~~~~~~~i~i~f~~~~~is~iRIWNYNks~~ds~~GvK~v~I~ldg~~i~ 127 (329)
T PF14652_consen 51 DDPRTLDKL--IDGVNLTT-DDEHMWLAPFSPGKQHVITIRFPEPTSISGIRIWNYNKSREDSYRGVKDVKIYLDGKLIF 127 (329)
T ss_pred CCccceeEE--ECCeEccC-cccceEEeecCCCCCEEEEEEeCCCceeeEEEEEcCCCCcchhhcCeEEEEEEECCEEee
Confidence 333444444 77887775 89999999999999999999999999999999999999976554221
Q ss_pred ------------------------------------------------------------------cccccCcchhhccc
Q psy504 255 ------------------------------------------------------------------SLLNTWGDRYYLGL 268 (358)
Q Consensus 255 ------------------------------------------------------------------~L~~~~g~~~~~gl 268 (358)
.++++||+++|+||
T Consensus 128 ~~~~~~irkapG~~~~D~~q~I~f~~~~k~~~~sks~~~~~~~~s~~~~~~~~~~~~~p~g~~l~~~ilStWGd~~yvGL 207 (329)
T PF14652_consen 128 PGEGFLIRKAPGNCHFDFGQTILFTDQDKISENSKSPSLISNVNSEEQASQDYEIPELPCGFVLQIEILSTWGDPHYVGL 207 (329)
T ss_pred cccceEEeeccccCccccccEEEeecccccccccccccccccccccccccccccccccccceEEEEEEeeccCCcceecc
Confidence 48899999999999
Q ss_pred cchhhhhhcCCcccccccccccCCcccccccCCCCCccChhhhcccccccCCCCCeeecccCcccccccCccEEEeeh
Q psy504 269 NGIELYDEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADGTHSWLAPILPQEMFKANGFVLVILK 346 (358)
Q Consensus 269 n~~El~~~~~~~~~~~~~~~~a~~~~~n~~~~~~~d~r~~~~l~~~~~~t~~~~~~wl~p~~~~~~~~~~~~~~~~~~ 346 (358)
||+|+||++|++|+++..+|.|+|+|||+||+++.|+||++|||||+|+|+|+.|||||||+|+...+-+.+.+|+.-
T Consensus 208 ngiElfD~~g~~i~~~~~~i~a~p~~v~~l~~~~~d~r~~~~Li~~~~~t~d~~~~Wlap~~~~~~~~~~~~~i~~~f 285 (329)
T PF14652_consen 208 NGIELFDENGERIKISPNNITAFPPSVNVLPGYTDDPRTPDKLIDGVNNTCDDRHMWLAPFLPGLNDNEQPNVIYFIF 285 (329)
T ss_pred cceEEEcCCCCEEeechhheeccCcccccCcccccCccchhhcccCccCCCCcccceeccccCCccccccccEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999988888888888764
No 93
>PF14652 DUF4457: Domain of unknown function (DUF4457)
Probab=99.74 E-value=3.5e-19 Score=172.08 Aligned_cols=79 Identities=48% Similarity=0.853 Sum_probs=76.4
Q ss_pred cccccCcchhhccccchhhhhhcCCcccccccccccCCcccccccCCCCCccChhhhcccccccCCCCCeeecccCccc
Q psy504 255 SLLNTWGDRYYLGLNGIELYDEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADGTHSWLAPILPQE 333 (358)
Q Consensus 255 ~L~~~~g~~~~~gln~~El~~~~~~~~~~~~~~~~a~~~~~n~~~~~~~d~r~~~~l~~~~~~t~~~~~~wl~p~~~~~ 333 (358)
.|+++||+++|.||+|+|++|.+|+.||++.++|.|.|+|+|++|+|.+|+||++||+||+|.|+|+.||||+||.|+.
T Consensus 3 ~llsnWG~~~~iGLTgie~~d~~~~~i~i~~~~i~~~p~Din~~p~~~~d~r~l~~Lidg~~~T~d~~~MWl~pf~~~~ 81 (329)
T PF14652_consen 3 ELLSNWGDPHYIGLTGIEVLDKNGQKIPISPSQISASPRDINDLPGYSDDPRTLDKLIDGVNLTTDDEHMWLAPFSPGK 81 (329)
T ss_pred EEEecCCCCCeEecceEEEEcCCCCEeeccHHHeEEcccccccccccCCCccceeEEECCeEccCcccceEEeecCCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999654
No 94
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.71 E-value=1.1e-17 Score=148.33 Aligned_cols=136 Identities=15% Similarity=0.116 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccC
Q psy504 66 LVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGG 145 (358)
Q Consensus 66 m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~Gg 145 (358)
.+.+|.++++++++|+++++|||++ +|.|.|+... ..+.+++..+..++||+||+++|.|.|+
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~------------~~~~~~i~~~~~~~kpVia~v~G~a~g~ 85 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTAS------------EVIRAELAAARAAGKPVVASGGGNAASG 85 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHH------------HHHHHHHHHHHhCCCCEEEEECCchhHH
Confidence 5789999999999999999999987 4888887642 2344567778889999999999999999
Q ss_pred CceeeccccEEEEcCCeEEeecceecccccCccccc--------ccccccc--hhhHHhhhhhhcccccccccccccchh
Q psy504 146 GLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQ--------RLPRIVG--IPLAALYEDLLNNDCMSSLDTRYMWCT 215 (358)
Q Consensus 146 G~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~--------~L~r~iG--~~~A~~ll~~ltg~~i~a~~d~~mw~e 215 (358)
|+.|+++||+++++++++|+++.+..+..+...... .+++..| ....++++ ..|..++| ++
T Consensus 86 g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l--~~g~~~~a-------~~ 156 (177)
T cd07014 86 GYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKI--AQGGVWTG-------QD 156 (177)
T ss_pred HHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHh--cCcCeEeH-------HH
Confidence 999999999999999999999987766433222222 4444555 77788887 88999999 99
Q ss_pred hHhcCCceEEEe
Q psy504 216 PYRRGLVVTLVI 227 (358)
Q Consensus 216 a~~~GLv~~vv~ 227 (358)
|++.|||+++..
T Consensus 157 A~~~GLVD~v~~ 168 (177)
T cd07014 157 AKANGLVDSLGS 168 (177)
T ss_pred HHHcCCcccCCC
Confidence 999999999874
No 95
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.69 E-value=5.1e-17 Score=145.39 Aligned_cols=145 Identities=16% Similarity=0.177 Sum_probs=115.0
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHH
Q psy504 49 VELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE 128 (358)
Q Consensus 49 ~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~ 128 (358)
++|.++. .++..+...+.++++.+++++ ++.|+|.=. |-|+++.. ...++.++.
T Consensus 2 ~vv~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In-----SpGG~v~~---------------~~~i~~~l~ 55 (187)
T cd07020 2 YVLEING-----AITPATADYLERAIDQAEEGG-ADALIIELD-----TPGGLLDS---------------TREIVQAIL 55 (187)
T ss_pred EEEEEee-----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEE-----CCCCCHHH---------------HHHHHHHHH
Confidence 4566653 356677889999999998665 788887633 33555532 224466777
Q ss_pred cCCCcEEEeec---cccccCCceeeccccEEEEcCCeEEeecceecccccCc--------------ccccccccccch--
Q psy504 129 SIPVPVLAVLD---GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGA--------------GGTQRLPRIVGI-- 189 (358)
Q Consensus 129 ~~~kPvIaavn---G~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~--------------g~s~~L~r~iG~-- 189 (358)
.+|||+|++|+ |+|.|+|+.++++||+++++++++|+.++...+..+.. +....+++..|.
T Consensus 56 ~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~ 135 (187)
T cd07020 56 ASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNA 135 (187)
T ss_pred hCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 89999999999 99999999999999999999999999999885543332 134478888998
Q ss_pred hhHHhhhhhhcccccccccccccchhhHhcCCceEEEec
Q psy504 190 PLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIK 228 (358)
Q Consensus 190 ~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~ 228 (358)
..+++++ ++|+.+++ +||+++||+++++.+
T Consensus 136 ~~a~~~l--~~g~~~~a-------~eA~~~Glvd~v~~~ 165 (187)
T cd07020 136 EWAEKAV--RESLSLTA-------EEALKLGVIDLIAAD 165 (187)
T ss_pred HHHHHHH--HcCCeecH-------HHHHHcCCcccccCC
Confidence 6899998 99999999 999999999999865
No 96
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.57 E-value=6.1e-15 Score=134.40 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=90.5
Q ss_pred EEEEEEcCC--CCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHH
Q psy504 48 IVELCMNRP--QARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTC 125 (358)
Q Consensus 48 V~~Itlnrp--~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~ 125 (358)
|++|.++.| +..+.-+.-++.+|.++++.+..|+++++|||+ .||+|+|+.... .+.+.+.
T Consensus 2 i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~~------------~~~~~l~ 64 (211)
T cd07019 2 IGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTASE------------VIRAELA 64 (211)
T ss_pred EEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHHH------------HHHHHHH
Confidence 455555432 112233344689999999999999999999997 589999997642 2344566
Q ss_pred HHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccc----------cCcccccccccccc
Q psy504 126 QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAII----------PGAGGTQRLPRIVG 188 (358)
Q Consensus 126 ~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~----------p~~g~s~~L~r~iG 188 (358)
.+..++||+||+++|.|.|+|+.|+++||.+++++++.|+ .+|+. +..|..+.+.+..|
T Consensus 65 ~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~g----siGv~~~~~~~~~~l~k~Gv~~~~~~~~g 133 (211)
T cd07019 65 AARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTG----SIGIFGVITTVENSLDSIGVHTDGVSTSP 133 (211)
T ss_pred HHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEE----EeEEEEEcCCHHHHHHhcCCceEEEEecC
Confidence 7888999999999999999999999999999999999887 34444 55555555555434
No 97
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.37 E-value=1.5e-12 Score=135.00 Aligned_cols=155 Identities=20% Similarity=0.229 Sum_probs=120.5
Q ss_pred ecCCEEEEEEcCCCC--CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeec--CCCceecCCCchhccccCHHHHHHHHHH
Q psy504 44 ERPGIVELCMNRPQA--RNALNATLVEEILTAVEAIRGDEEVRCVLLRSL--VKDVFCAGADLKHRLTLNEDQIRSFVST 119 (358)
Q Consensus 44 ~~~~V~~Itlnrp~~--~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~--gg~~FsaG~Dl~~~~~~~~~~~~~~~~~ 119 (358)
.++.|++|+++.+-. .+..+....+.+.+.++.+..|++|++|||+-. ||..|++ +.
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as-------------------e~ 366 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS-------------------EI 366 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH-------------------HH
Confidence 367899999987632 344444456788899999999999999999975 2333332 22
Q ss_pred HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEE------eecc------eecccccCccccccccc--
Q psy504 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM------GLVE------TKLAIIPGAGGTQRLPR-- 185 (358)
Q Consensus 120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f------~~pe------~~lGl~p~~g~s~~L~r-- 185 (358)
+++.+..+...+||+|+.++|.|.+||+.++++||.++|++.+.+ +.+. .++|+.++...+..+.+
T Consensus 367 i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s 446 (584)
T TIGR00705 367 IRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVS 446 (584)
T ss_pred HHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCC
Confidence 233455566788999999999999999999999999999999876 5553 58999998877776665
Q ss_pred --------------------------ccchhh-----HHhhhhhhcccccccccccccchhhHhcCCceEEE
Q psy504 186 --------------------------IVGIPL-----AALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLV 226 (358)
Q Consensus 186 --------------------------~iG~~~-----A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv 226 (358)
.++..| +.+.+ .+|+.+++ ++|++.|||+++-
T Consensus 447 ~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~i--a~Grv~tg-------~eA~~~GLVD~ig 509 (584)
T TIGR00705 447 LLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKV--AQGRVWTG-------EDAVSNGLVDALG 509 (584)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH--HhCCCcCH-------HHHHHcCCcccCC
Confidence 666666 66666 89999999 9999999999984
No 98
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.36 E-value=1.6e-12 Score=113.26 Aligned_cols=135 Identities=17% Similarity=0.175 Sum_probs=101.0
Q ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccc
Q psy504 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS 141 (358)
Q Consensus 62 l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~ 141 (358)
++..++.+|.+.++.++.|+.+++|+|... |.|+|+.. ...+...+..++||+|+.++|.
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~-----s~Gg~~~~---------------~~~i~~~l~~~~kpvva~~~g~ 67 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEVN-----TPGGRVDA---------------GMNIVDALQASRKPVIAYVGGQ 67 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEEE-----CCCcCHHH---------------HHHHHHHHHHhCCCEEEEECCh
Confidence 455789999999999999999999999874 66776643 2345567778889999999999
Q ss_pred cccCCceeeccccEEEEcCCeEEeecceecccccCcccc-------------cccccc------cchhhHHhhhhhhccc
Q psy504 142 AYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGT-------------QRLPRI------VGIPLAALYEDLLNND 202 (358)
Q Consensus 142 a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s-------------~~L~r~------iG~~~A~~ll~~ltg~ 202 (358)
|.++|+.|+++||.|++.+++.|++.....+.....+-. ..+... +......+++ ..+.
T Consensus 68 ~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~--~~~~ 145 (161)
T cd00394 68 AASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDI--EKDL 145 (161)
T ss_pred hHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHh--cCCc
Confidence 999999999999999999999999987765543211000 111111 2223345555 6677
Q ss_pred ccccccccccchhhHhcCCceEE
Q psy504 203 CMSSLDTRYMWCTPYRRGLVVTL 225 (358)
Q Consensus 203 ~i~a~~d~~mw~ea~~~GLv~~v 225 (358)
.+++ ++|++.|||++|
T Consensus 146 ~~~a-------~eA~~~GLvD~i 161 (161)
T cd00394 146 VLTA-------QEALEYGLVDAL 161 (161)
T ss_pred EEcH-------HHHHHcCCcCcC
Confidence 8888 999999999864
No 99
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.33 E-value=5.8e-12 Score=115.08 Aligned_cols=96 Identities=23% Similarity=0.229 Sum_probs=74.7
Q ss_pred cCCCCCCC-CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCC
Q psy504 54 NRPQARNA-LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPV 132 (358)
Q Consensus 54 nrp~~~Na-l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~k 132 (358)
+++...|+ ++..++.+|.++++.+++|+++++|||+.. |.|+++... ..+.+.+..+.. +|
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~-----s~gg~~~~~------------~~l~~~l~~~~~-~K 74 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDID-----SPGGEVAGV------------FELADAIRAARA-GK 74 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEe-----CCCCcHHHH------------HHHHHHHHHHhc-CC
Confidence 44554564 456899999999999999999999999764 556665331 223333344444 69
Q ss_pred cEEEeeccccccCCceeeccccEEEEcCCeEEeec
Q psy504 133 PVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLV 167 (358)
Q Consensus 133 PvIaavnG~a~GgG~~lal~cD~riase~a~f~~p 167 (358)
|+||+++|.|.|+|+.++++||.++|++++.|+..
T Consensus 75 pViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~i 109 (214)
T cd07022 75 PIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSI 109 (214)
T ss_pred CEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEee
Confidence 99999999999999999999999999999988664
No 100
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.28 E-value=3.5e-12 Score=111.15 Aligned_cols=129 Identities=15% Similarity=0.083 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeecccccc
Q psy504 65 TLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYG 144 (358)
Q Consensus 65 ~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~G 144 (358)
.+..++.+.++.+..++.+ .+.|.+.|| ++. ....+...+..++||+|+.++|.|.|
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG-------~~~---------------~~~~i~~~i~~~~~pvi~~v~g~a~s 71 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGG-------DVF---------------AGLAIYNALKRHKGKVTVKIDGLAAS 71 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCC-------CHH---------------HHHHHHHHHHhcCCCEEEEEcchHHh
Confidence 4677888889988877443 345555533 221 12346777888999999999999999
Q ss_pred CCceeeccccEEEEcCCeEEeecceecccccCcc---------------cccccccccc--hhhHHhhhhhhcccccccc
Q psy504 145 GGLEMALACDIRVAASNVRMGLVETKLAIIPGAG---------------GTQRLPRIVG--IPLAALYEDLLNNDCMSSL 207 (358)
Q Consensus 145 gG~~lal~cD~riase~a~f~~pe~~lGl~p~~g---------------~s~~L~r~iG--~~~A~~ll~~ltg~~i~a~ 207 (358)
+|+.++++||.|+++++++|++.+...|..+... ....+.+..| .....+++ ..+..+++
T Consensus 72 ~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~--~~~~~l~a- 148 (160)
T cd07016 72 AASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALM--DAETWLTA- 148 (160)
T ss_pred HHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH--hCCeECcH-
Confidence 9999999999999999999999777655433221 1223677788 45666665 55667888
Q ss_pred cccccchhhHhcCCceEE
Q psy504 208 DTRYMWCTPYRRGLVVTL 225 (358)
Q Consensus 208 ~d~~mw~ea~~~GLv~~v 225 (358)
+||+++||+++|
T Consensus 149 ------~eA~~~GliD~v 160 (160)
T cd07016 149 ------QEAVELGFADEI 160 (160)
T ss_pred ------HHHHHcCCCCcC
Confidence 999999999874
No 101
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.18 E-value=5.7e-11 Score=108.00 Aligned_cols=101 Identities=21% Similarity=0.284 Sum_probs=81.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (358)
Q Consensus 48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i 127 (358)
|++|.++.+=... ...++.+|.++++.++.|+++++|+|++. |.|+|+... ..+.+.+..+
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~~-----s~Gg~~~~~------------~~i~~~i~~~ 62 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRIN-----SPGGSVVAS------------EEIYREIRRL 62 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEEE-----CCCCCHHHH------------HHHHHHHHHH
Confidence 5666665432101 36789999999999999999999999985 778888642 1234456778
Q ss_pred HcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeec
Q psy504 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLV 167 (358)
Q Consensus 128 ~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~p 167 (358)
..++||+||+++|.|.|+|+.++++||.+++++.+.|+..
T Consensus 63 ~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~i 102 (208)
T cd07023 63 RKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSI 102 (208)
T ss_pred HhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeC
Confidence 8889999999999999999999999999999999988765
No 102
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.15 E-value=8.1e-11 Score=106.99 Aligned_cols=94 Identities=26% Similarity=0.351 Sum_probs=74.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (358)
Q Consensus 48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i 127 (358)
|++|+++.+=. ....+|.++++.+..|+++++|||++. |.|+++.. ..++...+
T Consensus 2 v~vi~i~g~i~------~s~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~---------------~~~l~~~i 55 (207)
T TIGR00706 2 IAILPVSGAIA------VSPEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVA---------------SEEIYEKL 55 (207)
T ss_pred EEEEEEEEEEe------cCHHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHH---------------HHHHHHHH
Confidence 56666654321 235789999999999999999999985 67777653 23345556
Q ss_pred HcCC--CcEEEeeccccccCCceeeccccEEEEcCCeEEeec
Q psy504 128 ESIP--VPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLV 167 (358)
Q Consensus 128 ~~~~--kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~p 167 (358)
..++ ||+||.++|.|.|+|+.|+++||.+++++++.++.-
T Consensus 56 ~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~i 97 (207)
T TIGR00706 56 KKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSI 97 (207)
T ss_pred HHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEee
Confidence 6665 999999999999999999999999999999887663
No 103
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.02 E-value=8.7e-10 Score=97.84 Aligned_cols=95 Identities=18% Similarity=0.250 Sum_probs=75.2
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHH
Q psy504 49 VELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE 128 (358)
Q Consensus 49 ~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~ 128 (358)
.+|.++. .+++.+...+.++++.+++++ +..|++.=. |.|+++. ....+...+.
T Consensus 2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in-----spGG~v~---------------~~~~I~~~l~ 55 (178)
T cd07021 2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDID-----TPGGRVD---------------SALEIVDLIL 55 (178)
T ss_pred EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE-----CcCCCHH---------------HHHHHHHHHH
Confidence 4555643 356678888999999998876 667766554 3355443 3445677888
Q ss_pred cCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecce
Q psy504 129 SIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVET 169 (358)
Q Consensus 129 ~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~ 169 (358)
.+++|+|+.|+|.|.++|+.++++||++++++++.|+.++.
T Consensus 56 ~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~ 96 (178)
T cd07021 56 NSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEP 96 (178)
T ss_pred hCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCee
Confidence 99999999999999999999999999999999999999844
No 104
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=98.98 E-value=1.5e-09 Score=99.77 Aligned_cols=87 Identities=21% Similarity=0.178 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeecccc
Q psy504 63 NATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSA 142 (358)
Q Consensus 63 ~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a 142 (358)
+..++.+|.++++++..|++|++|||+.. +..| ++.++.++ .+.+..+...+||+||.++| |
T Consensus 27 ~~~~~~~l~~~l~~a~~d~~ik~vvL~~~-s~gg-~~~~~~el---------------~~~i~~~~~~~kpVia~~~~-~ 88 (222)
T cd07018 27 SELSLRDLLEALEKAAEDDRIKGIVLDLD-GLSG-GLAKLEEL---------------RQALERFRASGKPVIAYADG-Y 88 (222)
T ss_pred CCccHHHHHHHHHHHhcCCCeEEEEEECC-CCCC-CHHHHHHH---------------HHHHHHHHHhCCeEEEEeCC-C
Confidence 45678999999999999999999999998 4444 55555432 44455666789999999998 8
Q ss_pred ccCCceeeccccEEEEcCCeEEeec
Q psy504 143 YGGGLEMALACDIRVAASNVRMGLV 167 (358)
Q Consensus 143 ~GgG~~lal~cD~riase~a~f~~p 167 (358)
.++|+.++++||.+++.+.+.|+..
T Consensus 89 ~sggy~lasaad~I~a~p~~~vg~i 113 (222)
T cd07018 89 SQGQYYLASAADEIYLNPSGSVELT 113 (222)
T ss_pred CchhhhhhhhCCEEEECCCceEEee
Confidence 8999999999999999999988885
No 105
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.33 E-value=1.3e-06 Score=76.36 Aligned_cols=85 Identities=16% Similarity=0.147 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccc
Q psy504 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS 141 (358)
Q Consensus 62 l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~ 141 (358)
++..+.+++.+.|..++.++..+.|+|.=. |.|+++. ....+...+...++|+++.+.|.
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In-----SpGG~v~---------------~~~~i~~~i~~~~~~v~~~~~g~ 68 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN-----SPGGDVF---------------AGMAIYDTIKFIKADVVTIIDGL 68 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE-----CCCCcHH---------------HHHHHHHHHHhcCCCceEEEEee
Confidence 457889999999999998877777666554 3455442 23345667777899999999999
Q ss_pred cccCCceeecccc--EEEEcCCeEEee
Q psy504 142 AYGGGLEMALACD--IRVAASNVRMGL 166 (358)
Q Consensus 142 a~GgG~~lal~cD--~riase~a~f~~ 166 (358)
|.++|.-++++|| .|++.++++|.+
T Consensus 69 aaS~~~~i~~a~~~g~r~~~p~a~~~i 95 (162)
T cd07013 69 AASMGSVIAMAGAKGKRFILPNAMMMI 95 (162)
T ss_pred hhhHHHHHHHcCCCCcEEEecCEEEEE
Confidence 9999999999999 577777776655
No 106
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.29 E-value=2.1e-06 Score=75.72 Aligned_cols=137 Identities=12% Similarity=0.198 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeec-
Q psy504 61 ALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD- 139 (358)
Q Consensus 61 al~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavn- 139 (358)
.++..+...|.+.++.++++ .++.|+|.=. |-|+.+.. ...+...+...++|+++.|+
T Consensus 9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in-----SPGG~v~~---------------~~~I~~~i~~~~~pvv~~v~p 67 (172)
T cd07015 9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRADA---------------AGNIVQRIQQSKIPVIIYVYP 67 (172)
T ss_pred EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE-----CCCCCHHH---------------HHHHHHHHHhcCcCEEEEEec
Confidence 36677888899999998865 5677777655 44555532 23446667778999999999
Q ss_pred --cccccCCceeeccccEEEEcCCeEEeecceecccccCcccc---------cc------cccccc--hhhHHhhhhhhc
Q psy504 140 --GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGT---------QR------LPRIVG--IPLAALYEDLLN 200 (358)
Q Consensus 140 --G~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s---------~~------L~r~iG--~~~A~~ll~~lt 200 (358)
|.|..+|.-++++||.+++.+++.++.-..-.|..+. +.. .. +.+.-| ...+.+++ -.
T Consensus 68 ~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~-~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v--~~ 144 (172)
T cd07015 68 PGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQN-GSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFI--TK 144 (172)
T ss_pred CCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCC-CccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHH--Hh
Confidence 9999999999999999999999999987764332110 000 00 111122 12223333 33
Q ss_pred ccccccccccccchhhHhcCCceEEEec
Q psy504 201 NDCMSSLDTRYMWCTPYRRGLVVTLVIK 228 (358)
Q Consensus 201 g~~i~a~~d~~mw~ea~~~GLv~~vv~~ 228 (358)
...+++ +||++.|+++.+..+
T Consensus 145 ~~~lta-------~EA~~~G~iD~ia~~ 165 (172)
T cd07015 145 DLSLTP-------EEALKYGVIEVVARD 165 (172)
T ss_pred hcCcCH-------HHHHHcCCceeeeCC
Confidence 344555 999999999998865
No 107
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.25 E-value=4.4e-06 Score=75.57 Aligned_cols=136 Identities=16% Similarity=0.148 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeecc
Q psy504 61 ALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDG 140 (358)
Q Consensus 61 al~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG 140 (358)
.++.++.+.+...+..++.++..+-|.+.=. |.|+++. ....++..+...+.|+++.+.|
T Consensus 39 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~In-----SpGG~v~---------------~g~~I~d~i~~~~~~v~t~~~G 98 (200)
T PRK00277 39 EVEDHMANLIVAQLLFLEAEDPDKDIYLYIN-----SPGGSVT---------------AGLAIYDTMQFIKPDVSTICIG 98 (200)
T ss_pred EECHHHHHHHHHHHHHhhccCCCCCEEEEEE-----CCCCcHH---------------HHHHHHHHHHhcCCCEEEEEEe
Confidence 3678899999999998886544333333322 2244432 2334456677788899999999
Q ss_pred ccccCCceeeccccEEEEcCCeEEeecceecccccCcccc----------------------cccccccch--hhHHhhh
Q psy504 141 SAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGT----------------------QRLPRIVGI--PLAALYE 196 (358)
Q Consensus 141 ~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s----------------------~~L~r~iG~--~~A~~ll 196 (358)
.|.++|..+++++ +++.++.+|++.+++.+..+++ ..+....|. ....+++
T Consensus 99 ~aaS~a~~I~~ag-----~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~ 173 (200)
T PRK00277 99 QAASMGAFLLAAG-----AKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDT 173 (200)
T ss_pred EeccHHHHHHhcC-----CCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence 9999999888874 2334444455555554332221 111222222 1222222
Q ss_pred hhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504 197 DLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS 230 (358)
Q Consensus 197 ~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~ 230 (358)
-.+..++| +||++.|++++|+.+.+
T Consensus 174 --~~~~~lsa-------~EA~e~GliD~Ii~~~~ 198 (200)
T PRK00277 174 --DRDNFMSA-------EEAKEYGLIDEVLTKRK 198 (200)
T ss_pred --hCCccccH-------HHHHHcCCccEEeecCC
Confidence 22344555 89999999999997644
No 108
>KOG1683|consensus
Probab=98.22 E-value=3e-07 Score=88.51 Aligned_cols=167 Identities=17% Similarity=0.095 Sum_probs=131.0
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHH
Q psy504 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ 126 (358)
Q Consensus 47 ~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~ 126 (358)
+++.+.++ |+ .|..|.++..+|..-++++..+..+++..+|+..-+.|++|.|..+.......-....+-++++++..
T Consensus 66 ~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~ 143 (380)
T KOG1683|consen 66 GFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILA 143 (380)
T ss_pred ccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHh
Confidence 68888888 66 59999999999999999999999999999999877899999999988766555555677788999999
Q ss_pred HHcCCCcEEEeeccccccCC--ceeeccccEEEEc--CCeEEeecceecccc-cCcc---cccccccccchhhHHhhhhh
Q psy504 127 LESIPVPVLAVLDGSAYGGG--LEMALACDIRVAA--SNVRMGLVETKLAII-PGAG---GTQRLPRIVGIPLAALYEDL 198 (358)
Q Consensus 127 i~~~~kPvIaavnG~a~GgG--~~lal~cD~rias--e~a~f~~pe~~lGl~-p~~g---~s~~L~r~iG~~~A~~ll~~ 198 (358)
..+++.|+.+|+||.+-.++ +-++.+|+|++.. ..-..+..+...++. |.+- -...++..+|+..-..+.
T Consensus 144 ~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~-- 221 (380)
T KOG1683|consen 144 LYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGV-- 221 (380)
T ss_pred cCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhcc--
Confidence 99999999999999999998 8999999999998 444557788887743 3221 122344445544333332
Q ss_pred hcccccccccccccchhhHhcCCceEEEec
Q psy504 199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIK 228 (358)
Q Consensus 199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~ 228 (358)
-++- .++++.|+++.+.+.
T Consensus 222 ----gfdv-------~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 222 ----GFDV-------AEALAVGLGDEIGPR 240 (380)
T ss_pred ----CccH-------HHHHhhccchhccch
Confidence 3444 789999999887764
No 109
>PRK10949 protease 4; Provisional
Probab=98.21 E-value=1.2e-05 Score=84.15 Aligned_cols=101 Identities=18% Similarity=0.276 Sum_probs=72.8
Q ss_pred cCCEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHH
Q psy504 45 RPGIVELCMNRP-----QARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVST 119 (358)
Q Consensus 45 ~~~V~~Itlnrp-----~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~ 119 (358)
++.|++|.++.. .....++. +.+.+.++++..|++|++|||+-. |.|+... ..+.
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrIn-----SpGGs~~------------ase~ 384 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVN-----SPGGSVT------------ASEV 384 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEec-----CCCCcHH------------HHHH
Confidence 456777777632 12233443 567888999999999999999987 3343321 1233
Q ss_pred HHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEe
Q psy504 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165 (358)
Q Consensus 120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~ 165 (358)
+++.+.++....||+|+.+.|.|..||.-++++||.++|.+.+..|
T Consensus 385 i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tG 430 (618)
T PRK10949 385 IRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTG 430 (618)
T ss_pred HHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCcee
Confidence 4444555667789999999999999999999999999999875433
No 110
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.93 E-value=0.00026 Score=68.02 Aligned_cols=140 Identities=11% Similarity=-0.029 Sum_probs=94.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (358)
Q Consensus 59 ~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav 138 (358)
.-+++++-++...+.++.+++..- =+|-|.-+ +++++ |.+- +.....+.+.+.+..+....+|+|++|
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f~l-PIItlvDT-pGA~~-G~~A---------E~~G~~~aiar~l~~~a~~~VP~IsVV 199 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKFGL-PILTFIDT-PGAWA-GVKA---------EKLGQGEAIAVNLREMFSFEVPIICTI 199 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCC-CEEEEEeC-CCcCc-CHHH---------HHHhHHHHHHHHHHHHHcCCCCEEEEE
Confidence 456889999999999999886543 34444333 23333 3221 112234556666777889999999999
Q ss_pred ccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccccccccccccchhhHh
Q psy504 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYR 218 (358)
Q Consensus 139 nG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~ 218 (358)
-|.|.|||.-....||++++.+++.++.- .|.++++..+...--...|.+.+ +++| .+.++
T Consensus 200 iGeggsGGAlal~~aD~V~m~e~a~~sVi------sPEg~a~Il~~d~~~a~~aA~~~------~ita-------~dL~~ 260 (322)
T CHL00198 200 IGEGGSGGALGIGIGDSIMMLEYAVYTVA------TPEACAAILWKDSKKSLDAAEAL------KITS-------EDLKV 260 (322)
T ss_pred eCcccHHHHHhhhcCCeEEEeCCeEEEec------CHHHHHHHHhcchhhHHHHHHHc------CCCH-------HHHHh
Confidence 99998887655556999999999988762 45555555544322222333333 6788 89999
Q ss_pred cCCceEEEecC
Q psy504 219 RGLVVTLVIKF 229 (358)
Q Consensus 219 ~GLv~~vv~~~ 229 (358)
.|+|+.|++..
T Consensus 261 ~giiD~ii~Ep 271 (322)
T CHL00198 261 LGIIDEIIPEP 271 (322)
T ss_pred CCCCeEeccCC
Confidence 99999999753
No 111
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=97.86 E-value=0.00036 Score=65.35 Aligned_cols=140 Identities=11% Similarity=0.065 Sum_probs=94.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (358)
Q Consensus 59 ~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav 138 (358)
.-+++++-++...+.++.+++..- =+|-|.=+ ++++. |.+.. .....+.+.+++..+...++|+|+.|
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~~l-PvV~lvDt-pGa~~-g~~aE---------~~G~~~~ia~~~~~~s~~~VP~IsVI 143 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKFGR-PVVTFINT-AGAYP-GVGAE---------ERGQGEAIARNLMEMSDLKVPIIAII 143 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCC-CEEEEEEC-CCcCC-CHhHH---------hccHHHHHHHHHHHHhCCCCCEEEEE
Confidence 456889999999999998876543 34444333 22332 32211 12234566677788889999999999
Q ss_pred ccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccccccccccccchhhHh
Q psy504 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYR 218 (358)
Q Consensus 139 nG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~ 218 (358)
-|.|.|||......||++++.+++.++.- .|+++++..+.. ..+|.+.. .-..+++ .++.+
T Consensus 144 ~G~~~gGgA~a~~~~D~v~m~~~a~~~v~------~pe~~a~il~~~---~~~a~~aa---~~~~~~a-------~~l~~ 204 (256)
T PRK12319 144 IGEGGSGGALALAVADQVWMLENTMYAVL------SPEGFASILWKD---GSRATEAA---ELMKITA-------GELLE 204 (256)
T ss_pred eCCcCcHHHHHhhcCCEEEEecCceEEEc------CHHHHHHHHhcC---cccHHHHH---HHcCCCH-------HHHHH
Confidence 99998888877779999999999987762 233333333322 13433332 1125677 89999
Q ss_pred cCCceEEEecC
Q psy504 219 RGLVVTLVIKF 229 (358)
Q Consensus 219 ~GLv~~vv~~~ 229 (358)
.|+|+.|++..
T Consensus 205 ~g~iD~ii~e~ 215 (256)
T PRK12319 205 MGVVDKVIPEH 215 (256)
T ss_pred CCCCcEecCCC
Confidence 99999999764
No 112
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.85 E-value=4.8e-05 Score=69.18 Aligned_cols=139 Identities=15% Similarity=0.144 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeecc
Q psy504 61 ALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDG 140 (358)
Q Consensus 61 al~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG 140 (358)
.++.++..++.+.|..++..+..+.|.|.=. |.|+++. ....++..+..++.|+++.+.|
T Consensus 43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v~---------------~g~~I~d~i~~~~~~v~t~~~G 102 (207)
T PRK12553 43 QVDDASANDVMAQLLVLESIDPDRDITLYIN-----SPGGSVT---------------AGDAIYDTIQFIRPDVQTVCTG 102 (207)
T ss_pred eECHHHHHHHHHHHHHHHhCCCCCCEEEEEe-----CCCCcHH---------------HHHHHHHHHHhcCCCcEEEEEe
Confidence 3678999999999999987553444444332 3344442 2334567777888899999999
Q ss_pred ccccCCceeecccc--EEEEcCCeEEeecceecccccCcccc------------------cccccccch--hhHHhhhhh
Q psy504 141 SAYGGGLEMALACD--IRVAASNVRMGLVETKLAIIPGAGGT------------------QRLPRIVGI--PLAALYEDL 198 (358)
Q Consensus 141 ~a~GgG~~lal~cD--~riase~a~f~~pe~~lGl~p~~g~s------------------~~L~r~iG~--~~A~~ll~~ 198 (358)
.|.++|.-++++|| .|++.+++.|.+-....+ .+..|.. ..+.+..|. ....+++
T Consensus 103 ~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~-~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~-- 179 (207)
T PRK12553 103 QAASAGAVLLAAGTPGKRFALPNARILIHQPSLG-GGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDT-- 179 (207)
T ss_pred ehhhHHHHHHHcCCcCcEEECCCchhhhcCcccc-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH--
Confidence 99999999999999 589999998888654321 0111211 112222332 2223333
Q ss_pred hcccccccccccccchhhHhcCCceEEEecC
Q psy504 199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKF 229 (358)
Q Consensus 199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~ 229 (358)
-.+..++| +||++.|+|++|+...
T Consensus 180 ~~~~~lta-------~EA~e~GliD~I~~~~ 203 (207)
T PRK12553 180 DRDKWLTA-------EEAKDYGLVDQIITSY 203 (207)
T ss_pred hcCccccH-------HHHHHcCCccEEcCch
Confidence 34555666 9999999999998653
No 113
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=97.85 E-value=1.9e-05 Score=69.59 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccc
Q psy504 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS 141 (358)
Q Consensus 62 l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~ 141 (358)
++.+...++...+..+..++..+.|+|.=. |.|+|+.. ...+...+...+.|+++.+.|.
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in-----SpGG~v~~---------------~~~i~~~l~~~~~~v~t~~~g~ 77 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN-----SPGGSVTA---------------GLAIYDTMQYIKPPVSTICLGL 77 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEE-----CCCCCHHH---------------HHHHHHHHHhcCCCEEEEEEeE
Confidence 567888999999999998766555555443 33444422 2344556667799999999999
Q ss_pred cccCCceeecccc--EEEEcCCeEEeecceecc
Q psy504 142 AYGGGLEMALACD--IRVAASNVRMGLVETKLA 172 (358)
Q Consensus 142 a~GgG~~lal~cD--~riase~a~f~~pe~~lG 172 (358)
|.++|.-+++++| .|++.+++.|.+-+...+
T Consensus 78 aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~ 110 (171)
T cd07017 78 AASMGALLLAAGTKGKRYALPNSRIMIHQPLGG 110 (171)
T ss_pred ehhHHHHHHHcCCCCCEEEccchHHHHcCCCcc
Confidence 9999999999999 799999999888765443
No 114
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.84 E-value=6.9e-05 Score=69.95 Aligned_cols=152 Identities=18% Similarity=0.208 Sum_probs=108.3
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeec
Q psy504 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (358)
Q Consensus 60 Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavn 139 (358)
.-++.+..+++.++++....+..+ .++|... |+++. ...++...+..++.++++.|+
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~~I-dLii~Tp-------GG~v~---------------AA~~I~~~l~~~~~~v~v~VP 126 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDKPI-DLIIHTP-------GGLVD---------------AAEQIARALREHPAKVTVIVP 126 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCCce-EEEEECC-------CCcHH---------------HHHHHHHHHHhCCCCEEEEEC
Confidence 568889999999999998777665 3444443 33332 234556778889999999999
Q ss_pred cccccCCceeeccccEEEEcCCeEEeecceecccccCcccccc----------------------------------ccc
Q psy504 140 GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQR----------------------------------LPR 185 (358)
Q Consensus 140 G~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~----------------------------------L~r 185 (358)
..|+.+|.-+|++||-+++++.+.+|--+.++|-.|..+-.-. |..
T Consensus 127 ~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v~~lL~~ 206 (285)
T PF01972_consen 127 HYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAIRQVREFVKELLKD 206 (285)
T ss_pred cccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999988886422111 222
Q ss_pred ccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHH
Q psy504 186 IVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALI 239 (358)
Q Consensus 186 ~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~ 239 (358)
.++..+|.++.+.|+...++- |.....++|.+.||-.. .+.+.++-.+.
T Consensus 207 ~~~~eka~~ia~~L~~g~~tH-dypi~~eea~~lGL~V~----t~~p~ei~~lm 255 (285)
T PF01972_consen 207 KMDEEKAEEIAEKLSSGKWTH-DYPITVEEAKELGLPVS----TDMPEEIYELM 255 (285)
T ss_pred CCCHHHHHHHHHHhcCCCCCC-CCCCCHHHHHHcCCCcC----CCCcHHHHHHH
Confidence 456666766665566655553 44455688888888532 24556666665
No 115
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=97.79 E-value=0.00058 Score=67.44 Aligned_cols=139 Identities=13% Similarity=0.063 Sum_probs=93.3
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeec
Q psy504 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (358)
Q Consensus 60 Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavn 139 (358)
.+++++.++...+.++.+++..- =+|-|.=+ ++++ .|.+.. .....+.+.+.+..+....+|+|+.|-
T Consensus 200 G~~~peGyRKAlR~mklAekf~l-PIVtLVDT-pGA~-pG~~AE---------e~Gqa~aIAr~l~ams~l~VPiISVVi 267 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKFGF-PILTFVDT-PGAY-AGIKAE---------ELGQGEAIAFNLREMFGLRVPIIATVI 267 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCC-CEEEEEeC-CCcC-CCHHHH---------HHhHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 46889999999999999876543 34444433 2233 232221 123345566777888999999999999
Q ss_pred cccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccccccccccccchhhHhc
Q psy504 140 GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRR 219 (358)
Q Consensus 140 G~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~ 219 (358)
|.+.+||.....+||++++.+++.++.- .|.++++..+....-...|.+.+ .+++ .++++.
T Consensus 268 GeGgSGGAlalg~aD~VlMle~A~ysVi------sPEgaAsILwkd~~~A~eAAeal------kitA-------~dL~~~ 328 (431)
T PLN03230 268 GEGGSGGALAIGCGNRMLMMENAVYYVA------SPEACAAILWKSAAAAPKAAEAL------RITA-------AELVKL 328 (431)
T ss_pred CCCCcHHHHHhhcCCEEEEecCCEEEec------CHHHHHHHHhccccchHHHHHHc------CCCH-------HHHHhC
Confidence 9996666544456899999999876652 35555555544332222333332 6777 899999
Q ss_pred CCceEEEecC
Q psy504 220 GLVVTLVIKF 229 (358)
Q Consensus 220 GLv~~vv~~~ 229 (358)
|+|+.|++..
T Consensus 329 GiID~II~Ep 338 (431)
T PLN03230 329 GVVDEIVPEP 338 (431)
T ss_pred CCCeEeccCC
Confidence 9999999753
No 116
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.79 E-value=0.00035 Score=73.06 Aligned_cols=140 Identities=10% Similarity=-0.002 Sum_probs=95.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (358)
Q Consensus 59 ~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav 138 (358)
.-+++++.++...+.++.+++..-. +|-|.=+ +++++ |.+..+ ......+.+.+..+....+|+|++|
T Consensus 220 fG~~~peGyRKAlRlmkLAekfgLP-IVtLVDT-pGA~p-G~~AEe---------~Gq~~aIArnl~amasl~VP~ISVV 287 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHHGFP-IVTFIDT-PGAYA-DLKSEE---------LGQGEAIAHNLRTMFGLKVPIVSIV 287 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCC-EEEEEEC-CCcCC-CchhHH---------HhHHHHHHHHHHHHhCCCCCEEEEE
Confidence 4568888899999999988765433 3433333 22333 322221 2334566677888889999999999
Q ss_pred ccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccccccccccccchhhHh
Q psy504 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYR 218 (358)
Q Consensus 139 nG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~ 218 (358)
-|.|.|||+.....||++++.+++.++. +.|.++++..+...--...|.+.+ .++| .+.++
T Consensus 288 iGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~~~A~eAAe~l------kiTa-------~dL~~ 348 (762)
T PLN03229 288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKAAPKAAEKL------RITA-------QELCR 348 (762)
T ss_pred eCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCcccHHHHHHHc------CCCH-------HHHHh
Confidence 9999888877777799999999987655 245555555444432223344443 6778 89999
Q ss_pred cCCceEEEecC
Q psy504 219 RGLVVTLVIKF 229 (358)
Q Consensus 219 ~GLv~~vv~~~ 229 (358)
.|+|+.|++..
T Consensus 349 lGiiD~IIpEp 359 (762)
T PLN03229 349 LQIADGIIPEP 359 (762)
T ss_pred CCCCeeeccCC
Confidence 99999999753
No 117
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.74 E-value=0.00088 Score=64.42 Aligned_cols=140 Identities=12% Similarity=0.057 Sum_probs=91.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (358)
Q Consensus 59 ~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav 138 (358)
.-+++++-++...+.++.+++-. +=+|-|.=+ +++++ |.+. +.....+.+.+++..+....+|+|++|
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f~-iPvVtlvDT-pGa~~-g~~a---------E~~G~~~aia~~l~a~s~~~VP~IsVV 196 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERFK-MPIITFIDT-PGAYP-GIGA---------EERGQSEAIARNLREMARLGVPVICTV 196 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEEC-CCCCC-CHHH---------HHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 35688999999999999887654 344444443 33333 3221 112334556677778889999999999
Q ss_pred ccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccccccccccccchhhHh
Q psy504 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYR 218 (358)
Q Consensus 139 nG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~ 218 (358)
-|.|.|||......||++++.+++.++. +.|.++++..+...--...|.+.+ .+++ .++.+
T Consensus 197 iGeggsGGAla~~~aD~v~m~~~a~~sV------isPEg~a~Il~kd~~~a~~aae~~------~~ta-------~~l~~ 257 (316)
T TIGR00513 197 IGEGGSGGALAIGVGDKVNMLEYSTYSV------ISPEGCAAILWKDASKAPKAAEAM------KITA-------PDLKE 257 (316)
T ss_pred ecccccHHHhhhccCCEEEEecCceEEe------cCHHHHHHHhccchhhHHHHHHHc------cCCH-------HHHHH
Confidence 9999777765445699999999998775 234444443333211112222222 4567 89999
Q ss_pred cCCceEEEecC
Q psy504 219 RGLVVTLVIKF 229 (358)
Q Consensus 219 ~GLv~~vv~~~ 229 (358)
.|+|+.|++..
T Consensus 258 ~G~iD~II~ep 268 (316)
T TIGR00513 258 LGLIDSIIPEP 268 (316)
T ss_pred CCCCeEeccCC
Confidence 99999999753
No 118
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.67 E-value=0.00018 Score=64.99 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccc
Q psy504 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS 141 (358)
Q Consensus 62 l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~ 141 (358)
++.++...+.+.|..++..+..+.|.|.=. |.|+++. ....+...+..++.||++.+.|.
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v~---------------ag~aI~d~i~~~~~~V~t~v~G~ 91 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYID-----SEGGDID---------------AGFAIFNMIRFVKPKVFTIGVGL 91 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE-----CCCCCHH---------------HHHHHHHHHHhCCCCEEEEEEee
Confidence 567888899999988876333344444332 2344432 22345677778999999999999
Q ss_pred cccCCceeeccccE--EEEcCCeEEeecc
Q psy504 142 AYGGGLEMALACDI--RVAASNVRMGLVE 168 (358)
Q Consensus 142 a~GgG~~lal~cD~--riase~a~f~~pe 168 (358)
|.+.|.-++++||- |++.+++.|.+-.
T Consensus 92 AaSaaslIl~ag~~~~R~~~p~s~imiHq 120 (197)
T PRK14512 92 VASAAALIFLAAKKESRFSLPNARYLLHQ 120 (197)
T ss_pred eHhHHHHHHhcCCcCceeECCCCcEEEEc
Confidence 99999999999985 8888888876544
No 119
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=97.62 E-value=9.5e-05 Score=65.65 Aligned_cols=97 Identities=19% Similarity=0.261 Sum_probs=69.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCce--EEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504 50 ELCMNRPQARNALNATLVEEILTAVEAIRGDEEVR--CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (358)
Q Consensus 50 ~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vr--vVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i 127 (358)
+|.|+.| ++.++...+.+.|..++..+..+ .+.|.+. |+|+. ....+...+
T Consensus 18 ~i~l~g~-----I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSp-------GG~v~---------------~g~~i~~~i 70 (182)
T PF00574_consen 18 IIFLNGP-----IDEESANRLISQLLYLENEDKNKPINIYINSP-------GGDVD---------------AGLAIYDAI 70 (182)
T ss_dssp EEEEESS-----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEEC-------EBCHH---------------HHHHHHHHH
T ss_pred EEEECCc-----cCHHHHHHHHHHHHHHhccCCCceEEEEEcCC-------CCccH---------------HHHHHHHHH
Confidence 4555544 68899999999888774332222 2334443 44442 234567788
Q ss_pred HcCCCcEEEeeccccccCCceeeccccE--EEEcCCeEEeecceeccc
Q psy504 128 ESIPVPVLAVLDGSAYGGGLEMALACDI--RVAASNVRMGLVETKLAI 173 (358)
Q Consensus 128 ~~~~kPvIaavnG~a~GgG~~lal~cD~--riase~a~f~~pe~~lGl 173 (358)
..++.|+++.+.|.|.++|.-++++||. |++.+++.|.+-+...+.
T Consensus 71 ~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~ 118 (182)
T PF00574_consen 71 RSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGS 118 (182)
T ss_dssp HHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEE
T ss_pred HhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeec
Confidence 8899999999999999999999999999 899999999987776554
No 120
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.58 E-value=0.0013 Score=63.40 Aligned_cols=140 Identities=9% Similarity=0.044 Sum_probs=93.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504 59 RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (358)
Q Consensus 59 ~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav 138 (358)
.-+++++.++...+.++.+++-. +=+|-|.=+ +++++ |.+-. .....+.+.+++..+....+|+|++|
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f~-lPIVtlvDT-pGa~~-G~~aE---------~~G~~~aia~~l~~~a~~~VP~IsVI 196 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKFG-LPIITFIDT-PGAYP-GIGAE---------ERGQSEAIARNLREMARLKVPIICTV 196 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeC-CCCCC-CHHHH---------hccHHHHHHHHHHHHhCCCCCEEEEE
Confidence 45688999999999998887653 445555444 33333 33222 12234566777888899999999999
Q ss_pred ccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhcccccccccccccchhhHh
Q psy504 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYR 218 (358)
Q Consensus 139 nG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~ 218 (358)
-|.|.|||......||++++.+++.++. +.|.++++..+.. ..+|.+.. ....+++ .++.+
T Consensus 197 iGeg~sGGAla~~~aD~v~m~~~A~~sv------isPEg~a~Il~~~---~~~a~~aa---e~~~ita-------~~l~~ 257 (319)
T PRK05724 197 IGEGGSGGALAIGVGDRVLMLEYSTYSV------ISPEGCASILWKD---ASKAPEAA---EAMKITA-------QDLKE 257 (319)
T ss_pred eCCccHHHHHHHhccCeeeeecCceEee------cCHHHHHHHHhcC---chhHHHHH---HHcCCCH-------HHHHH
Confidence 9999777765445699999999988765 2344444433332 12333332 1225677 89999
Q ss_pred cCCceEEEecC
Q psy504 219 RGLVVTLVIKF 229 (358)
Q Consensus 219 ~GLv~~vv~~~ 229 (358)
.|+|+.|++..
T Consensus 258 ~g~iD~II~Ep 268 (319)
T PRK05724 258 LGIIDEIIPEP 268 (319)
T ss_pred CCCceEeccCC
Confidence 99999999753
No 121
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=97.45 E-value=0.00069 Score=60.84 Aligned_cols=134 Identities=15% Similarity=0.115 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccc
Q psy504 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS 141 (358)
Q Consensus 62 l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~ 141 (358)
++.++..++...|..++.++..+-|.+.=. |.|+|+. ....++..+..++.|+...+.|.
T Consensus 35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~In-----SpGG~v~---------------~g~~I~d~l~~~~~~v~t~~~G~ 94 (191)
T TIGR00493 35 VNDSVANLIVAQLLFLEAEDPEKDIYLYIN-----SPGGSIT---------------AGLAIYDTMQFIKPDVSTICIGQ 94 (191)
T ss_pred EChHHHHHHHHHHHHhhccCCCCCEEEEEE-----CCCCCHH---------------HHHHHHHHHHhcCCCEEEEEEEe
Confidence 567788888888888886654444444333 2344442 22344556677777888888899
Q ss_pred cccCCceeecccc--EEEEcCCeEEeecceecccccCcccccc------------------cccccch--hhHHhhhhhh
Q psy504 142 AYGGGLEMALACD--IRVAASNVRMGLVETKLAIIPGAGGTQR------------------LPRIVGI--PLAALYEDLL 199 (358)
Q Consensus 142 a~GgG~~lal~cD--~riase~a~f~~pe~~lGl~p~~g~s~~------------------L~r~iG~--~~A~~ll~~l 199 (358)
|.+.|.-+++++| .|++.+++.|.+-+..-|. .|-+.- +.+..|. ....+++ -
T Consensus 95 AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~---~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~--~ 169 (191)
T TIGR00493 95 AASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGA---QGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDT--E 169 (191)
T ss_pred eccHHHHHHhcCCCCcEEecCCceEEEecCcccc---cCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh--h
Confidence 9999988888765 6999999998886554332 111111 2222232 2222332 3
Q ss_pred cccccccccccccchhhHhcCCceEEEe
Q psy504 200 NNDCMSSLDTRYMWCTPYRRGLVVTLVI 227 (358)
Q Consensus 200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~ 227 (358)
.+..++| +||+++|++++|+.
T Consensus 170 ~~~~lta-------~EA~~~GliD~ii~ 190 (191)
T TIGR00493 170 RDFFMSA-------EEAKEYGLIDSVLT 190 (191)
T ss_pred CCccCcH-------HHHHHcCCccEEec
Confidence 3445555 89999999999863
No 122
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=97.40 E-value=0.00071 Score=61.19 Aligned_cols=91 Identities=9% Similarity=0.076 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccc
Q psy504 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGS 141 (358)
Q Consensus 62 l~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~ 141 (358)
++.++.+++...+-.++.++..+-+.+.=. |.|+++. ....++..+...+.|+...+.|.
T Consensus 39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~IN-----SpGG~v~---------------~g~aIyd~m~~~~~~V~Tv~~G~ 98 (200)
T CHL00028 39 VDDEIANQLIGLMVYLSIEDDTKDLYLFIN-----SPGGSVI---------------SGLAIYDTMQFVKPDVHTICLGL 98 (200)
T ss_pred ecHHHHHHHHHHHHHHhccCCCCCEEEEEe-----CCCcchh---------------hHHHHHHHHHhcCCCEEEEEEEe
Confidence 788999999999999875543344433322 2244432 12345677888999999999999
Q ss_pred cccCCceeecccc--EEEEcCCeEEeecceecc
Q psy504 142 AYGGGLEMALACD--IRVAASNVRMGLVETKLA 172 (358)
Q Consensus 142 a~GgG~~lal~cD--~riase~a~f~~pe~~lG 172 (358)
|.+.|.-|++++| -|++.++++|.+-....|
T Consensus 99 AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~ 131 (200)
T CHL00028 99 AASMASFILAGGEITKRLAFPHARVMIHQPASS 131 (200)
T ss_pred hHHHHHHHHhCCCCCCEEecCCCeEEEecCccC
Confidence 9999999999998 689999888887665444
No 123
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.37 E-value=0.0028 Score=59.91 Aligned_cols=107 Identities=20% Similarity=0.269 Sum_probs=68.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCC----CceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDE----EVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (358)
Q Consensus 48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~----~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l 123 (358)
|+++-.+.--..-++....-..+.++++.+.+|. .+-+|.|.-+ .|..+.+-. ...... ......
T Consensus 61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dS------gGaRlqEg~----~~L~~~-a~i~~~ 129 (274)
T TIGR03133 61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDT------GGVRLQEAN----AGLIAI-AEIMRA 129 (274)
T ss_pred EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcC------CCcChhhhH----HHHHHH-HHHHHH
Confidence 5666666555566888888899999999987621 1234555443 244443210 011111 111222
Q ss_pred HHHHHcCCCcEEEeeccc--cccCCceeeccccEEEEcCCeEEee
Q psy504 124 TCQLESIPVPVLAVLDGS--AYGGGLEMALACDIRVAASNVRMGL 166 (358)
Q Consensus 124 ~~~i~~~~kPvIaavnG~--a~GgG~~lal~cD~riase~a~f~~ 166 (358)
...+... .|+|+.+-|+ |.||+..++.+||++|+++++++++
T Consensus 130 ~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~ 173 (274)
T TIGR03133 130 ILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGL 173 (274)
T ss_pred HHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEec
Confidence 2333444 9999999999 8999999999999999999887777
No 124
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.23 E-value=0.0012 Score=63.86 Aligned_cols=89 Identities=26% Similarity=0.300 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccC
Q psy504 66 LVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGG 145 (358)
Q Consensus 66 m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~Gg 145 (358)
..+.+.+.++.+..|+.+++|+|.=. |.|+.... ...+.+.++++..-. |+++.|++.|..|
T Consensus 81 ~~~~~~~~l~~~~~~~~vk~vvL~in-----SPGG~v~a------------s~~i~~~l~~l~~~~-PV~v~v~~~AASG 142 (317)
T COG0616 81 GGDDIEEILRAARADPSVKAVVLRIN-----SPGGSVVA------------SELIARALKRLRAKK-PVVVSVGGYAASG 142 (317)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEEEE-----CcCCchhH------------HHHHHHHHHHHhhcC-CEEEEECCeecch
Confidence 35667778888889999999998765 33444321 123344455555555 9999999999999
Q ss_pred CceeeccccEEEEcCCeEEeecceecc
Q psy504 146 GLEMALACDIRVAASNVRMGLVETKLA 172 (358)
Q Consensus 146 G~~lal~cD~riase~a~f~~pe~~lG 172 (358)
|.-+|++||.+||++.+..|---+..+
T Consensus 143 GY~IA~aAd~I~a~p~si~GSIGVi~~ 169 (317)
T COG0616 143 GYYIALAADKIVADPSSITGSIGVISG 169 (317)
T ss_pred hhhhhccCCEEEecCCceeeeceeEEe
Confidence 999999999999999988775544443
No 125
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.21 E-value=0.0026 Score=60.85 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=72.1
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCC----CceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHH
Q psy504 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDE----EVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY 122 (358)
Q Consensus 47 ~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~----~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 122 (358)
.|+.+-.+..-..-++.......+.++++.+.++. -+-+|.|.-+| |..+.+-. ...... .....
T Consensus 69 ~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG------GaRlqEg~----~~L~~~-a~i~~ 137 (301)
T PRK07189 69 PVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG------GVRLQEAN----AGLAAI-AEIMR 137 (301)
T ss_pred EEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC------CcCccchH----HHHHHH-HHHHH
Confidence 36666666555667899999999999999998765 13455554432 44443210 011111 11122
Q ss_pred HHHHHHcCCCcEEEeeccc--cccCCceeeccccEEEEcCCeEEee
Q psy504 123 MTCQLESIPVPVLAVLDGS--AYGGGLEMALACDIRVAASNVRMGL 166 (358)
Q Consensus 123 l~~~i~~~~kPvIaavnG~--a~GgG~~lal~cD~riase~a~f~~ 166 (358)
.+..+... +|+|+++-|+ |+||+...+.+||++|+++++.+++
T Consensus 138 ~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igl 182 (301)
T PRK07189 138 AIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGL 182 (301)
T ss_pred HHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence 22233444 9999999999 9999999999999999999888777
No 126
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.09 E-value=0.015 Score=55.43 Aligned_cols=155 Identities=13% Similarity=0.125 Sum_probs=92.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (358)
Q Consensus 48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i 127 (358)
|++...+..=..-++....-+.+.++++.+.+.. +=+|++...| |+.+.+-.. ......+....+....
T Consensus 135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SG------GARmQEg~~----sL~qmak~saa~~~~~ 203 (296)
T CHL00174 135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASG------GARMQEGSL----SLMQMAKISSALYDYQ 203 (296)
T ss_pred EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCC------Cccccccch----hhhhhHHHHHHHHHHH
Confidence 6666666555667899999999999999997765 4455555542 444432110 0001111111112112
Q ss_pred HcCCCcEEEeeccccccCCcee-eccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhhccccccc
Q psy504 128 ESIPVPVLAVLDGSAYGGGLEM-ALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSS 206 (358)
Q Consensus 128 ~~~~kPvIaavnG~a~GgG~~l-al~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ltg~~i~a 206 (358)
..-..|.|+++.|+|.||+... ++.||++|+.+++.+++.-. |.+ +. .+|+.++.
T Consensus 204 ~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGP---------------rVI------e~---t~ge~lpe 259 (296)
T CHL00174 204 SNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGK---------------RVI------EQ---TLNKTVPE 259 (296)
T ss_pred HcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCH---------------HHH------HH---hcCCcCCc
Confidence 3567999999999999998765 66799999988887666421 111 00 12333221
Q ss_pred ccccccchhhHhcCCceEEEecCCccHHHHHHH
Q psy504 207 LDTRYMWCTPYRRGLVVTLVIKFSQPVHISALI 239 (358)
Q Consensus 207 ~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~ 239 (358)
+.-.++-.++.|+|+.+|+..+....+..+.
T Consensus 260 --~fq~ae~l~~~G~vD~iV~r~~lr~~l~~ll 290 (296)
T CHL00174 260 --GSQAAEYLFDKGLFDLIVPRNLLKGVLSELF 290 (296)
T ss_pred --ccccHHHHHhCcCceEEEcHHHHHHHHHHHH
Confidence 1112366778999999998665555555544
No 127
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.02 E-value=0.0033 Score=57.61 Aligned_cols=88 Identities=13% Similarity=0.075 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCceE--EEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504 61 ALNATLVEEILTAVEAIRGDEEVRC--VLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (358)
Q Consensus 61 al~~~m~~eL~~~l~~~~~d~~vrv--VVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav 138 (358)
.++..+.+++...|..++..+.-+- +.|-+. |+++. ....++..+...+.||.+.+
T Consensus 62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSp-------GGsv~---------------aGlaIyd~m~~~~~~V~tv~ 119 (221)
T PRK14514 62 QIDDYTANTIQAQLLYLDSVDPGKDISIYINSP-------GGSVY---------------AGLGIYDTMQFISSDVATIC 119 (221)
T ss_pred EEcHHHHHHHHHHHHHHhccCCCCCEEEEEECC-------Ccchh---------------hHHHHHHHHHhcCCCEEEEE
Confidence 4678888888887777764322222 333444 33322 12345667788899999999
Q ss_pred ccccccCCceeeccccE--EEEcCCeEEeeccee
Q psy504 139 DGSAYGGGLEMALACDI--RVAASNVRMGLVETK 170 (358)
Q Consensus 139 nG~a~GgG~~lal~cD~--riase~a~f~~pe~~ 170 (358)
.|.|.+.|.-|++++|. |++.+++.|.+-...
T Consensus 120 ~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~ 153 (221)
T PRK14514 120 TGMAASMASVLLVAGTKGKRSALPHSRVMIHQPL 153 (221)
T ss_pred EEEehhHHHHHHhcCCCCceeeCCCCEEEeccCC
Confidence 99999999999999986 888888888775543
No 128
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.01 E-value=0.022 Score=54.25 Aligned_cols=157 Identities=14% Similarity=0.216 Sum_probs=95.0
Q ss_pred ecCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHH--HHH
Q psy504 44 ERPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFV--STL 120 (358)
Q Consensus 44 ~~~~-V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~--~~~ 120 (358)
.++. |+++..|..-..-+++....+.+.++++.+.+. .+=+|.+... | |+.+.+ ....+. ...
T Consensus 117 I~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dS-g-----GaRmqE-------g~~sL~~~ak~ 182 (285)
T TIGR00515 117 LYGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSAS-G-----GARMQE-------ALLSLMQMAKT 182 (285)
T ss_pred ECCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcC-C-----Cccccc-------chhHHHhHHHH
Confidence 3444 455555544456789999999999999998765 4456666554 2 222221 111111 122
Q ss_pred HHHHHHHHcCCCcEEEeeccccccCCce-eeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhhh
Q psy504 121 RYMTCQLESIPVPVLAVLDGSAYGGGLE-MALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL 199 (358)
Q Consensus 121 ~~l~~~i~~~~kPvIaavnG~a~GgG~~-lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~l 199 (358)
...+.++.....|.|+++-|+|.||+.. +++.+|+++|.+++.+++.-.++ +.+.+
T Consensus 183 ~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprV-----------ie~ti------------ 239 (285)
T TIGR00515 183 SAALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRV-----------IEQTV------------ 239 (285)
T ss_pred HHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHH-----------HHHHh------------
Confidence 2234456677899999999999999654 56799999999999887732220 11112
Q ss_pred cccccccccccccchhhHhcCCceEEEecCCccHHHHHHHH
Q psy504 200 NNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIV 240 (358)
Q Consensus 200 tg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~ 240 (358)
|+.+.. +.-.++-+.+.|.|+.|+...+....+..+..
T Consensus 240 -~e~lpe--~~q~ae~~~~~G~vD~iv~~~~~r~~l~~~L~ 277 (285)
T TIGR00515 240 -REKLPE--GFQTSEFLLEHGAIDMIVHRPEMKKTLASLLA 277 (285)
T ss_pred -cCccch--hcCCHHHHHhCCCCcEEECcHHHHHHHHHHHH
Confidence 222210 01112556788999999977665555555443
No 129
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=96.98 E-value=0.0034 Score=56.60 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeecc
Q psy504 61 ALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDG 140 (358)
Q Consensus 61 al~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG 140 (358)
.++.+...++...|..++.++..+-+.+.=. |.|+++.. ...++..+...+.|+...+.|
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~IN-----SpGG~v~~---------------g~aIyd~m~~~~~~V~t~~~G 92 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYIN-----SPGGSVYD---------------GLGIFDTMQHVKPDVHTVCVG 92 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEe-----CCCcchhh---------------HHHHHHHHHhcCCCEEEEEEE
Confidence 3788999999999999885443343333332 22444321 234566777888999999999
Q ss_pred ccccCCceeeccccE--EEEcCCeEEeecce
Q psy504 141 SAYGGGLEMALACDI--RVAASNVRMGLVET 169 (358)
Q Consensus 141 ~a~GgG~~lal~cD~--riase~a~f~~pe~ 169 (358)
.|.+.|.-|++++|- |++.+++++.+-..
T Consensus 93 ~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP 123 (196)
T PRK12551 93 LAASMGAFLLCAGAKGKRSSLQHSRIMIHQP 123 (196)
T ss_pred EehhHHHHHHhCCCCCceecCCCCEEEEecC
Confidence 999999999999884 88888888777554
No 130
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=96.84 E-value=0.0069 Score=54.77 Aligned_cols=90 Identities=16% Similarity=0.215 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCce--EEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504 61 ALNATLVEEILTAVEAIRGDEEVR--CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (358)
Q Consensus 61 al~~~m~~eL~~~l~~~~~d~~vr--vVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav 138 (358)
.++.++.+.+...|-.++.++.-+ -+-|-+. |+|+. ....++..+...+.||...+
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSp-------GG~v~---------------~GlaIyd~m~~~~~~V~Ti~ 92 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQMYINCP-------GGEVY---------------AGLAIYDTMRYIKAPVSTIC 92 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEEEEECC-------CCchh---------------hHHHHHHHHHhcCCCEEEEE
Confidence 478889999988888887543322 2333444 34432 12445777888999999999
Q ss_pred ccccccCCceeeccccE--EEEcCCeEEeecceecc
Q psy504 139 DGSAYGGGLEMALACDI--RVAASNVRMGLVETKLA 172 (358)
Q Consensus 139 nG~a~GgG~~lal~cD~--riase~a~f~~pe~~lG 172 (358)
.|.|.+.|.-|++++|- |++.+++++-+-....|
T Consensus 93 ~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~ 128 (201)
T PRK14513 93 VGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAG 128 (201)
T ss_pred EeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCC
Confidence 99999999999999995 89999998877655433
No 131
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=96.82 E-value=0.029 Score=53.63 Aligned_cols=158 Identities=17% Similarity=0.202 Sum_probs=94.9
Q ss_pred eecCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHH--HH
Q psy504 43 PERPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFV--ST 119 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~--~~ 119 (358)
..++.-..|.-|.+. ..-+++....+.+.++++.+.+.. +=+|.|.-. | |+.+.+ ....+. ..
T Consensus 117 ~I~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~-lPlV~l~ds-g-----GarmqE-------gi~sL~~~ak 182 (292)
T PRK05654 117 TIEGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEK-CPLVIFSAS-G-----GARMQE-------GLLSLMQMAK 182 (292)
T ss_pred EECCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHcC-CCEEEEEcC-C-----Ccchhh-------hhhHHHhHHH
Confidence 345554444444444 567899999999999999997664 456666654 2 332221 111111 12
Q ss_pred HHHHHHHHHcCCCcEEEeeccccccCCce-eeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhhh
Q psy504 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLE-MALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDL 198 (358)
Q Consensus 120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~-lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~~ 198 (358)
....+.++.....|.|+++-|+|.||+.. .++.+|+++|.+++.+++.-.+ .+...+|..
T Consensus 183 ~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e~-------- 243 (292)
T PRK05654 183 TSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVREK-------- 243 (292)
T ss_pred HHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhhh--------
Confidence 22334455677899999999999999654 5777999999998877773221 011111111
Q ss_pred hcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHH
Q psy504 199 LNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIV 240 (358)
Q Consensus 199 ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~ 240 (358)
+. +.+. .++.+.+.|+|+.|+...+....+..+..
T Consensus 244 lp-e~~~------~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~ 278 (292)
T PRK05654 244 LP-EGFQ------RAEFLLEHGAIDMIVHRRELRDTLASLLA 278 (292)
T ss_pred hh-hhhc------CHHHHHhCCCCcEEECHHHHHHHHHHHHH
Confidence 00 1111 12556788999999977665555544443
No 132
>PRK11778 putative inner membrane peptidase; Provisional
Probab=96.82 E-value=0.005 Score=59.72 Aligned_cols=103 Identities=22% Similarity=0.243 Sum_probs=66.7
Q ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHH
Q psy504 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMT 124 (358)
Q Consensus 45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~ 124 (358)
.+.|++|.++.+=.... ...+.+++...++.+..+ .+|||+-. |.|+..... ......+
T Consensus 89 ~~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLrid-----SpGG~v~~s------------~~a~~~l 147 (330)
T PRK11778 89 KPRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLE-----SPGGVVHGY------------GLAASQL 147 (330)
T ss_pred CCeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEe-----CCCCchhHH------------HHHHHHH
Confidence 45688888875532111 223446666666555533 46777765 234433210 0111114
Q ss_pred HHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecc
Q psy504 125 CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVE 168 (358)
Q Consensus 125 ~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe 168 (358)
.++....||+++.+++.|..||.-+|++||-++|.+.+.++.-.
T Consensus 148 ~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIG 191 (330)
T PRK11778 148 QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIG 191 (330)
T ss_pred HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeee
Confidence 45667889999999999999999999999999999988766543
No 133
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=96.45 E-value=0.11 Score=48.36 Aligned_cols=163 Identities=15% Similarity=0.104 Sum_probs=93.8
Q ss_pred EEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-HcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHH
Q psy504 39 YHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAI-RGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFV 117 (358)
Q Consensus 39 ~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~-~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~ 117 (358)
.-+-+.++.-..|.=|.|.. .++.+-...+.+.+... +.+..+=+|.|.=+ +. |-.|. .++.....
T Consensus 24 ~G~arl~G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDt-pG-~~~g~---------~aE~~G~~ 90 (238)
T TIGR03134 24 VGSAELAGGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDT-PS-QAYGR---------REELLGIN 90 (238)
T ss_pred EEEEEECCEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeC-CC-CCCCH---------HHHHHHHH
Confidence 33444455555555556653 68877778888888885 44566666666655 22 33232 22333344
Q ss_pred HHHHHHHHHHH---cCCCcEEEeeccccccCCc-eeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHH
Q psy504 118 STLRYMTCQLE---SIPVPVLAVLDGSAYGGGL-EMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193 (358)
Q Consensus 118 ~~~~~l~~~i~---~~~kPvIaavnG~a~GgG~-~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~ 193 (358)
+.+.+++..+. ..+.|+|+.|-|.+.|||+ .+.+.+|.++|-+++.++. .+.-+++..+-+-. ..+.
T Consensus 91 ~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~v-------m~~e~aa~I~~~~~--~~~~ 161 (238)
T TIGR03134 91 QALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVHV-------MDLESMARVTKRSV--EELE 161 (238)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEEe-------cCHHHHHHHHccCH--hHHH
Confidence 55555555555 4559999999999998876 4555688888887776654 33222322222222 2233
Q ss_pred hhhhhhcccccccccccccchhhHhcCCceEEEecCC
Q psy504 194 LYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFS 230 (358)
Q Consensus 194 ~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~ 230 (358)
++. ..-+..+. ....+.+.|+|+.|++..+
T Consensus 162 e~a---~~~~~~a~----~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 162 ALA---KSSPVFAP----GIENFVKLGGVHALLDVAD 191 (238)
T ss_pred HHH---Hhhhhhcc----CHHHHHhCCCccEEeCCCC
Confidence 332 11111110 0145789999999997544
No 134
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.023 Score=56.65 Aligned_cols=148 Identities=16% Similarity=0.250 Sum_probs=100.4
Q ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEe-ecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLR-SLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (358)
Q Consensus 45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVlt-g~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l 123 (358)
++.|.++.++ +.+++.+.+.+.+.++.++++.. .++|+. -+ ++ | ..+.+.++
T Consensus 25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldT-PG----G----------------l~~sm~~i 77 (436)
T COG1030 25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEENA-AAVVLELDT-PG----G----------------LLDSMRQI 77 (436)
T ss_pred CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCC-cEEEEEecC-CC----c----------------hHHHHHHH
Confidence 4568888886 45899999999999999997763 344443 33 21 1 23567788
Q ss_pred HHHHHcCCCcEEEeec---cccccCCceeeccccEEEEcCCeEEeecceeccc-cc--Ccc-cccc------cccccc--
Q psy504 124 TCQLESIPVPVLAVLD---GSAYGGGLEMALACDIRVAASNVRMGLVETKLAI-IP--GAG-GTQR------LPRIVG-- 188 (358)
Q Consensus 124 ~~~i~~~~kPvIaavn---G~a~GgG~~lal~cD~riase~a~f~~pe~~lGl-~p--~~g-~s~~------L~r~iG-- 188 (358)
.+++.+.+.|++..|. +.|..+|.-++++||+..+++.+.+|-...-.+- .+ ... .... +.+.-|
T Consensus 78 v~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN 157 (436)
T COG1030 78 VRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN 157 (436)
T ss_pred HHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence 9999999999888874 4699999999999999999999988875432221 00 000 0001 111122
Q ss_pred hhhHHhhhhhhcccccccccccccchhhHhcCCceEEEec
Q psy504 189 IPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIK 228 (358)
Q Consensus 189 ~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~ 228 (358)
...|.+++ -....+++ +||++.|+++-+..+
T Consensus 158 ~~~ae~~v--~~~~~l~a-------~eA~~~~vid~iA~~ 188 (436)
T COG1030 158 PTWAERFV--TENLSLTA-------EEALRQGVIDLIARD 188 (436)
T ss_pred hHHHHHHh--hhccCCCh-------hHHHhcCccccccCC
Confidence 22344555 55566666 899999999876654
No 135
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=96.21 E-value=0.023 Score=59.65 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccC
Q psy504 66 LVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGG 145 (358)
Q Consensus 66 m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~Gg 145 (358)
.+.++.++++.+..|+.|++|||.-.+ +.|..+.. .+.+++.+..+....||+||..++.+ -+
T Consensus 77 ~l~~i~~~i~~A~~D~~IkgIvL~i~~----~~g~~~~~------------~~ei~~ai~~fk~sgKpVvA~~~~~~-s~ 139 (584)
T TIGR00705 77 SLFDIVNAIRQAADDRRIEGLVFDLSN----FSGWDSPH------------LVEIGSALSEFKDSGKPVYAYGTNYS-QG 139 (584)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEccC----CCCCCHHH------------HHHHHHHHHHHHhcCCeEEEEEcccc-ch
Confidence 567999999999999999999998762 22433322 23344455566678999999888775 57
Q ss_pred CceeeccccEEEEcCCeEEee
Q psy504 146 GLEMALACDIRVAASNVRMGL 166 (358)
Q Consensus 146 G~~lal~cD~riase~a~f~~ 166 (358)
|.-||.+||-+++.+.+.+++
T Consensus 140 ~YylAs~AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 140 QYYLASFADEIILNPMGSVDL 160 (584)
T ss_pred hhhhhhhCCEEEECCCceEEe
Confidence 899999999999998876654
No 136
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.05 E-value=0.025 Score=50.94 Aligned_cols=45 Identities=24% Similarity=0.236 Sum_probs=36.2
Q ss_pred HHHHHHHcCCCcEEEeeccccccCCceeeccccEE--EEcCCeEEee
Q psy504 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR--VAASNVRMGL 166 (358)
Q Consensus 122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~r--iase~a~f~~ 166 (358)
.++..+...++||...+-|.|...|.-|++++|-. ++.+++++-.
T Consensus 76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimI 122 (200)
T COG0740 76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMI 122 (200)
T ss_pred HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEE
Confidence 34677888999999999999999999999998754 6666665544
No 137
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=95.90 E-value=0.059 Score=55.40 Aligned_cols=107 Identities=19% Similarity=0.269 Sum_probs=70.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCC--CchhccccCHHHHHHHHHHHHHHHH
Q psy504 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGA--DLKHRLTLNEDQIRSFVSTLRYMTC 125 (358)
Q Consensus 48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~--Dl~~~~~~~~~~~~~~~~~~~~l~~ 125 (358)
|.++..+.--...++.......+.++++.+.+..-. +|.|.-. .|. ++.+-. ....... .+..-..
T Consensus 59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~~P-~v~l~ds------gGa~~r~~eg~----~~l~~~g-~i~~~~~ 126 (493)
T PF01039_consen 59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENGLP-LVYLVDS------GGAFLRMQEGV----ESLMGMG-RIFRAIA 126 (493)
T ss_dssp EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHTEE-EEEEEEE------SSBCGGGGGHH----HHHHHHH-HHHHHHH
T ss_pred EEEEEeccceecCCCCcccceeeehHHHHHHHcCCC-cEEeccc------cccccccchhh----hhhhhhH-HHHHHHH
Confidence 444444444456789999999999999999877544 4444332 244 333211 1111122 2222334
Q ss_pred HHHcCCCcEEEeeccccccCCceeeccccEEEEcCC-eEEeec
Q psy504 126 QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGLV 167 (358)
Q Consensus 126 ~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~-a~f~~p 167 (358)
.+.. ..|+|+++.|+|.|||..++..||++|+.++ +.+++.
T Consensus 127 ~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~ 168 (493)
T PF01039_consen 127 RLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA 168 (493)
T ss_dssp HHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS
T ss_pred HHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec
Confidence 4556 9999999999999999999999999999987 776653
No 138
>PRK10949 protease 4; Provisional
Probab=95.33 E-value=0.08 Score=55.83 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccC
Q psy504 66 LVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGG 145 (358)
Q Consensus 66 m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~Gg 145 (358)
.+.++.++++.+..|+.|++|||.-.+. .|..+. ..+.+++.+..+....||+||.-+.. --+
T Consensus 96 ~l~div~~i~~Aa~D~rIkgivL~i~s~----gG~~~a------------~~~eI~~ai~~fk~sGKpVvA~~~~~-~s~ 158 (618)
T PRK10949 96 SLFDIVNTIRQAKDDRNITGIVLDLKNF----AGADQP------------SMQYIGKALREFRDSGKPVYAVGDSY-SQG 158 (618)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEeCCC----CCccHH------------HHHHHHHHHHHHHHhCCeEEEEecCc-cch
Confidence 4568999999999999999999998621 122221 12334455666677899999864444 456
Q ss_pred CceeeccccEEEEcCCeEEeec
Q psy504 146 GLEMALACDIRVAASNVRMGLV 167 (358)
Q Consensus 146 G~~lal~cD~riase~a~f~~p 167 (358)
+.-||.+||-+++.+.+.+++.
T Consensus 159 ~YyLASaAD~I~l~P~G~v~~~ 180 (618)
T PRK10949 159 QYYLASFANKIYLSPQGVVDLH 180 (618)
T ss_pred hhhhhhhCCEEEECCCceEEEe
Confidence 8999999999999988766543
No 139
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=95.29 E-value=0.011 Score=55.73 Aligned_cols=92 Identities=12% Similarity=0.138 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccchhhHHhhhh
Q psy504 118 STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYED 197 (358)
Q Consensus 118 ~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG~~~A~~ll~ 197 (358)
+.+.+-+..+.++++|+||.|=|---+||+--...+|.+++.+.++|+. +.|.++++.++-. ..+|.+..
T Consensus 175 eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD---~~ka~eAA- 244 (317)
T COG0825 175 EAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKD---ASKAKEAA- 244 (317)
T ss_pred HHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcC---hhhhHHHH-
Confidence 3444556678899999999999986666654444479999999999986 5788888776654 34444442
Q ss_pred hhcccccccccccccchhhHhcCCceEEEec
Q psy504 198 LLNNDCMSSLDTRYMWCTPYRRGLVVTLVIK 228 (358)
Q Consensus 198 ~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~ 228 (358)
....++| .+.++.|+|+.|++.
T Consensus 245 --e~mkita-------~dLk~lgiID~II~E 266 (317)
T COG0825 245 --EAMKITA-------HDLKELGIIDGIIPE 266 (317)
T ss_pred --HHcCCCH-------HHHHhCCCcceeccC
Confidence 2336778 899999999999975
No 140
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=95.17 E-value=0.66 Score=43.60 Aligned_cols=176 Identities=17% Similarity=0.194 Sum_probs=111.4
Q ss_pred ccccCCCcceeEEEEeeeecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhc
Q psy504 26 SVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105 (358)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~~~~V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~ 105 (358)
+-..+|..+.+..-.=.-..-.|+...++..=-.-++..-.=+.+.++++.+-.+. +.+|+++..| |+-+.+
T Consensus 102 a~~~tg~~davvtg~g~i~G~pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k-~P~v~f~aSG------GARMQE- 173 (294)
T COG0777 102 ARKKTGLDDAVVTGEGTINGLPVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDK-LPLVLFSASG------GARMQE- 173 (294)
T ss_pred HHhhcCCCcceEEEeeEECCeEEEEEEEeccccccchhHHHHHHHHHHHHHHHHhC-CCEEEEecCc------chhHhH-
Confidence 33455555555543322222346666666655567788888889999999987654 6788888763 444432
Q ss_pred cccCHHHHHHHH--HHHHHHHHHHHcCCCcEEEeeccccccC-CceeeccccEEEEcCCeEEeecceecccccCcccccc
Q psy504 106 LTLNEDQIRSFV--STLRYMTCQLESIPVPVLAVLDGSAYGG-GLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQR 182 (358)
Q Consensus 106 ~~~~~~~~~~~~--~~~~~l~~~i~~~~kPvIaavnG~a~Gg-G~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~ 182 (358)
....++ ......+.++.....|.|+.+..+..|| .+.+++..|+.||-++|.+||.-.
T Consensus 174 ------g~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGp------------- 234 (294)
T COG0777 174 ------GILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGP------------- 234 (294)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcc-------------
Confidence 111222 2334456677888999999999999988 467999999999998887776422
Q ss_pred cccccchhhHHhhhhhhcccccccccccccchhhHhcCCceEEEecCCccHHHHHHHHh
Q psy504 183 LPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVW 241 (358)
Q Consensus 183 L~r~iG~~~A~~ll~~ltg~~i~a~~d~~mw~ea~~~GLv~~vv~~~~~~~~~~~l~~~ 241 (358)
|.| .+..++-+ -.| +. ..+..++.|+|+.||...+....++.+...
T Consensus 235 --RVI-EQTire~L--Peg--fQ------~aEfLlehG~iD~iv~R~elr~tla~ll~~ 280 (294)
T COG0777 235 --RVI-EQTIREKL--PEG--FQ------TAEFLLEHGMIDMIVHRDELRTTLASLLAK 280 (294)
T ss_pred --hhh-hhhhcccC--Ccc--hh------hHHHHHHcCCceeeecHHHHHHHHHHHHHH
Confidence 111 11111222 222 11 126778999999999876666666655443
No 141
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=94.85 E-value=0.31 Score=50.38 Aligned_cols=111 Identities=15% Similarity=0.247 Sum_probs=76.4
Q ss_pred eecCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHH
Q psy504 43 PERPGIVELCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLR 121 (358)
Q Consensus 43 ~~~~~V~~Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~ 121 (358)
+.++.-.-|.=|+|. ..-+++.+..+...++++.+.+. .+=+|.|.-++| |..|.+ .+.....+...
T Consensus 311 ri~G~~V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G--~~~g~~---------~E~~g~~~~~a 378 (512)
T TIGR01117 311 RINGQSVGIIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG--FLPGVN---------QEYGGIIRHGA 378 (512)
T ss_pred EECCEEEEEEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC--ccccHH---------HHHHHHHHHHH
Confidence 344443344445554 34569999999999999988764 445666655523 555533 22234455667
Q ss_pred HHHHHHHcCCCcEEEeeccccccCCceeecc-----ccEEEEcCCeEEee
Q psy504 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALA-----CDIRVAASNVRMGL 166 (358)
Q Consensus 122 ~l~~~i~~~~kPvIaavnG~a~GgG~~lal~-----cD~riase~a~f~~ 166 (358)
+++.++....+|.|+.|-|.+.|||. ++++ +|+++|.+++.++.
T Consensus 379 ~~~~a~~~~~vP~isvi~g~~~Gga~-~am~~~~~~~d~~~a~p~a~~~v 427 (512)
T TIGR01117 379 KVLYAYSEATVPKVTIITRKAYGGAY-LAMCSKHLGADQVYAWPTAEIAV 427 (512)
T ss_pred HHHHHHHhCCCCEEEEEcCCCchHHH-HHhccccCCCCEEEEcCCCeEee
Confidence 78888899999999999999988754 4443 89999998887776
No 142
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=94.42 E-value=0.19 Score=51.95 Aligned_cols=106 Identities=14% Similarity=0.181 Sum_probs=66.0
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (358)
Q Consensus 48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i 127 (358)
|+.+-.+.-=..-++.....+.+.++++.+.+..-. +|.|.-. +|+.+.+-... ...+.+.+... ..
T Consensus 84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~lP-lV~l~dS------gGarm~eg~~~----l~~~~~~~~~~--~~ 150 (512)
T TIGR01117 84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMGAP-VVGLNDS------GGARIQEAVDA----LKGYGDIFYRN--TI 150 (512)
T ss_pred EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcCCC-EEEEecC------CCCCccccchh----hhhHHHHHHHH--HH
Confidence 444444444456789999999999999999877644 4444332 13333221110 00111111111 12
Q ss_pred HcCCCcEEEeeccccccCCceeeccccEEEEcCC-eEEee
Q psy504 128 ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VRMGL 166 (358)
Q Consensus 128 ~~~~kPvIaavnG~a~GgG~~lal~cD~riase~-a~f~~ 166 (358)
..-..|.|+++.|+|.||+.....+||++|+.++ +.+++
T Consensus 151 ~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~ 190 (512)
T TIGR01117 151 ASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFI 190 (512)
T ss_pred HcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEe
Confidence 2346899999999999999888789999999985 44544
No 143
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=94.30 E-value=0.37 Score=50.32 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=69.0
Q ss_pred cCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHH
Q psy504 45 RPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYM 123 (358)
Q Consensus 45 ~~~-V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l 123 (358)
++. |+++--+.--+.-+++....+.+.++++.+.+..- -+|.|.-. + |+.+.+-..... ....+ ..+..-
T Consensus 127 ~Gr~V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~l-PlV~l~DS-g-----Garl~~q~e~~~-~~~~~-g~if~~ 197 (569)
T PLN02820 127 HGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCRL-PCIYLVDS-G-----GANLPRQAEVFP-DRDHF-GRIFYN 197 (569)
T ss_pred CCEEEEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCC-CEEEEEeC-C-----CcCCcccccccc-hHhHH-HHHHHH
Confidence 443 44444443335678999999999999999987654 34544443 2 333321000000 00011 111111
Q ss_pred HHHHHcCCCcEEEeeccccccCCceeeccccEEEEcC-CeEEee
Q psy504 124 TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS-NVRMGL 166 (358)
Q Consensus 124 ~~~i~~~~kPvIaavnG~a~GgG~~lal~cD~riase-~a~f~~ 166 (358)
...+.....|.|+++-|+|.|||.....+||++|+++ .+.+++
T Consensus 198 ~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~ 241 (569)
T PLN02820 198 QARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL 241 (569)
T ss_pred HHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe
Confidence 2235566799999999999999999999999999986 455554
No 144
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=94.04 E-value=0.22 Score=51.08 Aligned_cols=101 Identities=17% Similarity=0.232 Sum_probs=67.1
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHH
Q psy504 49 VELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE 128 (358)
Q Consensus 49 ~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~ 128 (358)
....-+.+-+.-++..-....+.++.+.+.++....+.+..|. |+.+.+-.. . .+.+ -.+..-..++.
T Consensus 94 ~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsg-------Gari~~~v~-~---l~g~-g~iF~~~a~~S 161 (526)
T COG4799 94 FVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSG-------GARIQEGVP-S---LAGY-GRIFYRNARAS 161 (526)
T ss_pred EEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEccc-------ccccccCcc-c---cccc-hHHHHHHHHhc
Confidence 3333344556778888888889999998887766656566554 444433110 0 0111 11111223344
Q ss_pred cCCCcEEEeeccccccCCceeeccccEEEEcCCe
Q psy504 129 SIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162 (358)
Q Consensus 129 ~~~kPvIaavnG~a~GgG~~lal~cD~riase~a 162 (358)
.. .|.|++|-|+|.|||+.+...||++|+.++.
T Consensus 162 g~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~ 194 (526)
T COG4799 162 GV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ 194 (526)
T ss_pred cC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence 44 9999999999999999999999999999874
No 145
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=93.17 E-value=0.5 Score=43.39 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCce--EEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504 61 ALNATLVEEILTAVEAIRGDEEVR--CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (358)
Q Consensus 61 al~~~m~~eL~~~l~~~~~d~~vr--vVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav 138 (358)
..+.++.+.+...+-.++.++.-+ -+-|-+.||..|+ |-=+.. ......++..+...+-++...+
T Consensus 48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~-G~~iG~------------v~~glaIyD~m~~ik~~V~Tv~ 114 (222)
T PRK12552 48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYT-GDAIGF------------ETEAFAICDTMRYIKPPVHTIC 114 (222)
T ss_pred chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccc-cccccc------------cccHHHHHHHHHhcCCCeEEEE
Confidence 445558888888888886544322 3445555444333 310000 1123345667777888999999
Q ss_pred ccccccCCceeeccccE--EEEcCCeEEeeccee
Q psy504 139 DGSAYGGGLEMALACDI--RVAASNVRMGLVETK 170 (358)
Q Consensus 139 nG~a~GgG~~lal~cD~--riase~a~f~~pe~~ 170 (358)
-|.|.+.+.-|++++|- |++.+++++-+-...
T Consensus 115 ~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~ 148 (222)
T PRK12552 115 IGQAMGTAAMILSAGTKGQRASLPHATIVLHQPR 148 (222)
T ss_pred EeehhhHHHHHHhCCCCCceecCCCcEEEeccCC
Confidence 99999999999999985 888888887775544
No 146
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=92.67 E-value=0.062 Score=46.37 Aligned_cols=41 Identities=27% Similarity=0.330 Sum_probs=31.6
Q ss_pred HHcCCCcEEEeeccccccCCceeeccccEEEEcCCeEEeec
Q psy504 127 LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLV 167 (358)
Q Consensus 127 i~~~~kPvIaavnG~a~GgG~~lal~cD~riase~a~f~~p 167 (358)
+.+..||++|.++|.|..+|+-++.+||-+++.+.+.++..
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsi 42 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSI 42 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEe
Confidence 35689999999999999899999999999999988776654
No 147
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=90.87 E-value=1.1 Score=46.17 Aligned_cols=115 Identities=18% Similarity=0.208 Sum_probs=73.9
Q ss_pred EeeeecCCEEEEEEcCCCCCC-CCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHH
Q psy504 40 HNSPERPGIVELCMNRPQARN-ALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVS 118 (358)
Q Consensus 40 ~l~~~~~~V~~Itlnrp~~~N-al~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~ 118 (358)
-+-+.+|.-.-|.=|+|.... +++.+-.....+.++.++. .++=+|.|.-+ ..|..|.+ .+.....+
T Consensus 287 g~arl~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt--pGf~~g~~---------~E~~g~~~ 354 (493)
T PF01039_consen 287 GFARLGGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT--PGFMPGPE---------AERAGIIR 354 (493)
T ss_dssp EEEEETTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE--CEB--SHH---------HHHTTHHH
T ss_pred eeeeeCCcceEEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec--ccccccch---------hhhcchHH
Confidence 344455554445556665322 6999999999999998886 46667777765 24555533 23345667
Q ss_pred HHHHHHHHHHcCCCcEEEeeccccccCCceeeccc----cEEEEcCCeEEee
Q psy504 119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALAC----DIRVAASNVRMGL 166 (358)
Q Consensus 119 ~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal~c----D~riase~a~f~~ 166 (358)
...+++.++..+++|+|..|-|.+.|+|....... |+++|.++++++.
T Consensus 355 ~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~v 406 (493)
T PF01039_consen 355 AGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGV 406 (493)
T ss_dssp HHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEES
T ss_pred HHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeee
Confidence 78889999999999999999999999876333333 6777777766655
No 148
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=83.35 E-value=20 Score=37.63 Aligned_cols=95 Identities=15% Similarity=0.212 Sum_probs=68.1
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeec
Q psy504 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD 139 (358)
Q Consensus 60 Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavn 139 (358)
-+++.+-.....+.++.+++ -++=+|-|.-. + .|..|.+-+ .....+...+++.++....+|.|+.|-
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~-p-Gf~~G~~~E---------~~G~~~~~a~l~~A~a~~~VP~isvi~ 447 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNI-T-GFMVGSRSE---------ASGIAKAGAKMVMAVACAKVPKITIIV 447 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEEC-C-CCCCCHHHH---------HhhHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 35778888888888888875 45666666655 2 266664432 244677888899999999999999999
Q ss_pred cccccCCceee----ccccEEEEcCCeEEee
Q psy504 140 GSAYGGGLEMA----LACDIRVAASNVRMGL 166 (358)
Q Consensus 140 G~a~GgG~~la----l~cD~riase~a~f~~ 166 (358)
|.|.|+|..-. +..|++++.+++.++.
T Consensus 448 g~a~G~g~~aM~g~~~~~d~~~awp~A~i~v 478 (569)
T PLN02820 448 GGSFGAGNYGMCGRAYSPNFLFMWPNARIGV 478 (569)
T ss_pred CCcchHHHHHhcCcCCCCCEEEECCCCeEEe
Confidence 99999864322 3567777777666554
No 149
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=78.30 E-value=27 Score=36.17 Aligned_cols=114 Identities=17% Similarity=0.226 Sum_probs=79.0
Q ss_pred eeeecCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHH
Q psy504 41 NSPERPGIVELCMNRPQA-RNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVST 119 (358)
Q Consensus 41 l~~~~~~V~~Itlnrp~~-~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~ 119 (358)
+-+.++.-.=|.=|.|.. .-+|+.+-...-.+.++.. .-.++=.|.|.-. ..|..|-|-+ .....+.
T Consensus 318 faRi~G~pVGiIANqp~~~~G~l~~~sa~KaArFI~~c-d~~~iPlv~L~d~--pGFm~G~~~E---------~~giik~ 385 (526)
T COG4799 318 FARIDGRPVGIIANQPRHLGGVLDIDSADKAARFIRLC-DAFNIPLVFLVDT--PGFMPGTDQE---------YGGIIKH 385 (526)
T ss_pred EEEECCEEEEEEecCccccccccchHHHHHHHHHHHhh-hccCCCeEEEeCC--CCCCCChhHH---------hChHHHh
Confidence 334445433344566654 3478888888888877444 4456777777765 4588886643 3467788
Q ss_pred HHHHHHHHHcCCCcEEEeeccccccCCceee----ccccEEEEcCCeEEee
Q psy504 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMA----LACDIRVAASNVRMGL 166 (358)
Q Consensus 120 ~~~l~~~i~~~~kPvIaavnG~a~GgG~~la----l~cD~riase~a~f~~ 166 (358)
..+++.++....+|.|..+-|-+.|||.... +.+|+.+|.+++.++.
T Consensus 386 Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~iaV 436 (526)
T COG4799 386 GAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIAV 436 (526)
T ss_pred hhHHHhhHhhccCCeEEEEecccccceeeeecCccCCCceeEecCcceeee
Confidence 8899999999999999999999999986443 3356666665555554
No 150
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=75.43 E-value=7.6 Score=37.38 Aligned_cols=59 Identities=12% Similarity=0.314 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHHHcCC---CceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504 63 NATLVEEILTAVEAIRGDE---EVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (358)
Q Consensus 63 ~~~m~~eL~~~l~~~~~d~---~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav 138 (358)
......++.++++.+.... .+-+|||.=. |+.+.++...++ ..+.+++..++.|+|++|
T Consensus 53 G~~A~~~I~~al~~~~~~~~~~~~Dviii~RG-------GGs~eDL~~FN~----------e~varai~~~~~PvisaI 114 (319)
T PF02601_consen 53 GEGAAASIVSALRKANEMGQADDFDVIIIIRG-------GGSIEDLWAFND----------EEVARAIAASPIPVISAI 114 (319)
T ss_pred ccchHHHHHHHHHHHHhccccccccEEEEecC-------CCChHHhcccCh----------HHHHHHHHhCCCCEEEec
Confidence 3455778889999987654 4566665432 222222222222 346889999999999976
No 151
>KOG0840|consensus
Probab=69.18 E-value=13 Score=34.81 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=80.4
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeecc
Q psy504 61 ALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDG 140 (358)
Q Consensus 61 al~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG 140 (358)
.++.++-+.+...|-.++.+++-|=|.+.=. |-|+.+.. ...++..+.-++-||-..+=|
T Consensus 100 ~Idd~va~~viaqlL~Ld~ed~~K~I~lyIN-----SPGG~vta---------------glAIYDtMq~ik~~V~Tic~G 159 (275)
T KOG0840|consen 100 PIDDDVANLVIAQLLYLDSEDPKKPIYLYIN-----SPGGSVTA---------------GLAIYDTMQYIKPDVSTICVG 159 (275)
T ss_pred cCcHHHHHHHHHHHHHhhccCCCCCeEEEEe-----CCCCccch---------------hhhHHHHHHhhCCCceeeehh
Confidence 3788888899998888887766676666554 33444421 122345555666666666667
Q ss_pred ccccCCceeeccccEEEEcCCeEEeecceecccccCcccccccccccc-hhhHHhhh----------hhhccccccc---
Q psy504 141 SAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG-IPLAALYE----------DLLNNDCMSS--- 206 (358)
Q Consensus 141 ~a~GgG~~lal~cD~riase~a~f~~pe~~lGl~p~~g~s~~L~r~iG-~~~A~~ll----------~~ltg~~i~a--- 206 (358)
.|.+-|.-|..+. +..-++.+|..++=+.-..|++.- +... .-.|+|++ ---||.++.-
T Consensus 160 ~Aas~aalLLaaG-----~KG~R~alPnsriMIhQP~gga~G--qa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~ 232 (275)
T KOG0840|consen 160 LAASMAALLLAAG-----AKGKRYALPNSRIMIHQPSGGAGG--QATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEK 232 (275)
T ss_pred hHHhHHHHHHhcC-----CCcceeecCCceeEEeccCCCcCc--cchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHh
Confidence 7776655443332 456678888777666533333210 1011 12233332 1134443321
Q ss_pred --cccccc-chhhHhcCCceEEEec
Q psy504 207 --LDTRYM-WCTPYRRGLVVTLVIK 228 (358)
Q Consensus 207 --~~d~~m-w~ea~~~GLv~~vv~~ 228 (358)
..|++| ++||.+.|||+.|..+
T Consensus 233 d~dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 233 DMDRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred hhcccccCCHHHHHHhcchhhhhcC
Confidence 134444 7999999999998864
No 152
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=68.38 E-value=12 Score=37.88 Aligned_cols=80 Identities=14% Similarity=0.214 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeecccc
Q psy504 63 NATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSA 142 (358)
Q Consensus 63 ~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a 142 (358)
..+...++.++++.++..+++-+||+.=. |+.+ -||..| ++ ..+.+++..|+.|+|++| ||-
T Consensus 168 G~~a~~~i~~al~~~~~~~~~dviii~RG-GGs~---eDL~~F---n~----------e~~~rai~~~~~Pvis~i-GHe 229 (432)
T TIGR00237 168 GEGAVQSIVESIELANTKNECDVLIVGRG-GGSL---EDLWSF---ND----------EKVARAIFLSKIPIISAV-GHE 229 (432)
T ss_pred CccHHHHHHHHHHHhhcCCCCCEEEEecC-CCCH---HHhhhc---Cc----------HHHHHHHHcCCCCEEEec-CcC
Confidence 44567888888988887665666666433 2211 133322 21 346889999999999976 222
Q ss_pred ccCCceeeccccEEEEcCC
Q psy504 143 YGGGLEMALACDIRVAASN 161 (358)
Q Consensus 143 ~GgG~~lal~cD~riase~ 161 (358)
.-- .-.=+.+|.|.+|+.
T Consensus 230 ~D~-ti~D~vAd~ra~TPt 247 (432)
T TIGR00237 230 TDF-TISDFVADLRAPTPS 247 (432)
T ss_pred CCc-cHHHHhhhccCCCcH
Confidence 110 012234566666553
No 153
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=66.93 E-value=12 Score=37.77 Aligned_cols=58 Identities=17% Similarity=0.373 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504 64 ATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (358)
Q Consensus 64 ~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav 138 (358)
.....++.++++.++..+++.++|+-=. |+-++++...+++ .+.+++..++.|+|++|
T Consensus 175 ~~A~~eIv~aI~~an~~~~~DvlIVaRG-------GGSiEDLW~FNdE----------~vaRAi~~s~iPvISAV 232 (440)
T COG1570 175 EGAAEEIVEAIERANQRGDVDVLIVARG-------GGSIEDLWAFNDE----------IVARAIAASRIPVISAV 232 (440)
T ss_pred CCcHHHHHHHHHHhhccCCCCEEEEecC-------cchHHHHhccChH----------HHHHHHHhCCCCeEeec
Confidence 3457889999999998888888776332 3334443333332 36889999999999987
No 154
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=66.13 E-value=20 Score=34.09 Aligned_cols=73 Identities=16% Similarity=0.279 Sum_probs=49.5
Q ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHH-----------------------HHHHHHHcCCCceEEEEeecCCCceecCCC
Q psy504 45 RPGIVELCMNRPQARNALNATLVEEIL-----------------------TAVEAIRGDEEVRCVLLRSLVKDVFCAGAD 101 (358)
Q Consensus 45 ~~~V~~Itlnrp~~~Nal~~~m~~eL~-----------------------~~l~~~~~d~~vrvVVltg~gg~~FsaG~D 101 (358)
.++|++|. +.-.|+.++..++. ++|+.+++||+.++||+-|.- |.+
T Consensus 145 ~G~IGiVS-----rSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEi------GG~ 213 (293)
T COG0074 145 PGNIGIVS-----RSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEI------GGP 213 (293)
T ss_pred CCceEEEe-----cCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecC------CCc
Confidence 57777764 23567888877776 678999999999999999983 222
Q ss_pred chhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccc
Q psy504 102 LKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAY 143 (358)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~ 143 (358)
-+ +...++ ..+ ...+||+|+.+-|.+.
T Consensus 214 aE-------e~AA~~-------i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 214 AE-------EEAAEY-------IKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred HH-------HHHHHH-------HHH-hccCCCEEEEEeccCC
Confidence 21 222222 223 3345999999998865
No 155
>KOG0540|consensus
Probab=63.36 E-value=68 Score=32.63 Aligned_cols=105 Identities=18% Similarity=0.321 Sum_probs=74.3
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHc
Q psy504 51 LCMNRPQ-ARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLES 129 (358)
Q Consensus 51 Itlnrp~-~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~ 129 (358)
|.-|+|+ ..-.|..+--....+.++-.. ...+-.|.|...+| |..|.+.+. ....+....|+.++..
T Consensus 353 Ivgnn~kf~~G~L~s~sa~KgarfIe~c~-q~~IPLi~l~ni~G--fm~g~~~e~---------~gIaK~gAklv~a~a~ 420 (536)
T KOG0540|consen 353 IVGNNPKFAGGVLFSESAVKGARFIELCD-QRNIPLIFLQNITG--FMVGRAAEA---------GGIAKHGAKLVYAVAC 420 (536)
T ss_pred EeccCchhcccccchhhhhhhHHHHHHHH-hcCCcEEEEEccCC--ccccchhhh---------hchhhhhhhhhhhhhh
Confidence 4445555 334666666666666666554 45677777777633 888887653 3455666778999999
Q ss_pred CCCcEEEeeccccccCCce---eeccccEEEEcCCeEEeec
Q psy504 130 IPVPVLAVLDGSAYGGGLE---MALACDIRVAASNVRMGLV 167 (358)
Q Consensus 130 ~~kPvIaavnG~a~GgG~~---lal~cD~riase~a~f~~p 167 (358)
..+|-|..+.|.+.||-.. -+++-|+.++-+.|++++-
T Consensus 421 akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~Iavm 461 (536)
T KOG0540|consen 421 AKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVM 461 (536)
T ss_pred ccCceEEEEecCccCCcccccccccCCceeEEcccceeeec
Confidence 9999999999999997544 5667788888888877653
No 156
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=59.62 E-value=28 Score=33.80 Aligned_cols=54 Identities=17% Similarity=0.388 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccc
Q psy504 69 EILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAY 143 (358)
Q Consensus 69 eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~ 143 (358)
.+.+.|+.+++|++.++|++.+..+ | + .+++.+++.+. ....||+|+.+-|...
T Consensus 211 ~~~D~L~~~~~Dp~T~~Ivl~~E~g-----G-~-------~e~~aa~fi~~--------~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 211 NFIDCLKLFLNDPETEGIILIGEIG-----G-T-------AEEEAAEWIKN--------NPIKKPVVSFIAGITA 264 (317)
T ss_pred CHHHHHHHHhhCCCccEEEEEEecC-----C-c-------hhHHHHHHHHh--------hcCCCcEEEEEecCCC
Confidence 3557788888899999999998732 1 1 11222233322 2468999999988864
No 157
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=54.73 E-value=27 Score=35.31 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHHHcCCCceEEEE-eecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEee
Q psy504 63 NATLVEEILTAVEAIRGDEEVRCVLL-RSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVL 138 (358)
Q Consensus 63 ~~~m~~eL~~~l~~~~~d~~vrvVVl-tg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav 138 (358)
......++.++++.+.... +-+||| +|. | .+ -||..| ++ ..+.+++..|+.|+|++|
T Consensus 174 G~~A~~~i~~al~~~~~~~-~Dviii~RGG-G-S~---eDL~~F---n~----------e~v~~ai~~~~~Pvis~I 231 (438)
T PRK00286 174 GEGAAASIVAAIERANARG-EDVLIVARGG-G-SL---EDLWAF---ND----------EAVARAIAASRIPVISAV 231 (438)
T ss_pred CccHHHHHHHHHHHhcCCC-CCEEEEecCC-C-CH---HHhhcc---Cc----------HHHHHHHHcCCCCEEEec
Confidence 3445788888888887633 445544 443 2 11 144332 22 346889999999999976
No 158
>PLN02522 ATP citrate (pro-S)-lyase
Probab=54.36 E-value=38 Score=35.91 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCCCceEEEEeec-CCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccc
Q psy504 69 EILTAVEAIRGDEEVRCVLLRSL-VKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAY 143 (358)
Q Consensus 69 eL~~~l~~~~~d~~vrvVVltg~-gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~ 143 (358)
.+.+.++.+++|++.++|++.+. |++ |= +++.+ ..++.. ..||+|+.+-|.+.
T Consensus 209 ~~~D~L~~~~~Dp~Tk~IvlygEiGg~------~e-----------~~f~e----a~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 209 TLSDHVLRFNNIPQIKMIVVLGELGGR------DE-----------YSLVE----ALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred CHHHHHHHHhcCCCCCEEEEEEecCch------hH-----------HHHHH----HHHHhc-CCCCEEEEeccCCC
Confidence 35677888888999999999987 431 10 12222 222222 68999999999976
No 159
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=51.03 E-value=38 Score=28.63 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeecccc
Q psy504 69 EILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSA 142 (358)
Q Consensus 69 eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a 142 (358)
.+.+.++.+.+||+.++|++.-.+- . | -+.+.+..++.... ||+|+..-|..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~---~---d---------------~~~f~~~~~~a~~~-KPVv~lk~Grt 92 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGI---G---D---------------GRRFLEAARRAARR-KPVVVLKAGRT 92 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES-----S-------------------HHHHHHHHHHHCCC-S-EEEEE----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCC---C---C---------------HHHHHHHHHHHhcC-CCEEEEeCCCc
Confidence 4677888888999999999988721 1 1 12334445555566 99999998873
No 160
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=39.48 E-value=65 Score=27.79 Aligned_cols=61 Identities=23% Similarity=0.280 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccc
Q psy504 69 EILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAY 143 (358)
Q Consensus 69 eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~ 143 (358)
...+++..+.+|+++++|++-+.+|-.=| ++....+...+..... ...++|+|+.|-|...
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~------------~~~A~~l~~a~~~~~~--~~~~~pvVa~v~GT~~ 120 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVGGIGSC------------EDPAAGLIPAIKEAKA--EGRKKPVVARVCGTNA 120 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEESSSSSH------------HHHHHHHHHHHSHCTH--TTT-SEEEEEEESTTC
T ss_pred HHHHHHHHHhcCCCccEEEEEeccccCch------------HHHHHHHHHHHHhccc--cCCCCcEEEEeeeecC
Confidence 45667888888999999999987431111 1111222222111111 3478999999988754
No 161
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=34.04 E-value=1e+02 Score=29.73 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccc
Q psy504 69 EILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAY 143 (358)
Q Consensus 69 eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~ 143 (358)
++.+.++.+.+|++.++|++...++ |.+++. .+++. .+.. ..||+|+..-|..-
T Consensus 192 ~~~d~L~yl~~Dp~T~~I~ly~E~~-----G~~~~d--------~~~f~-------~aa~-~~KPVV~lk~Grs~ 245 (300)
T PLN00125 192 NFVDCLEKFVKDPQTEGIILIGEIG-----GTAEED--------AAAFI-------KESG-TEKPVVAFIAGLTA 245 (300)
T ss_pred CHHHHHHHHhhCCCCcEEEEEeccC-----CchHHH--------HHHHH-------HHhc-CCCCEEEEEecCCC
Confidence 3556677777788888888877621 222221 12222 2222 38999999888763
No 162
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=33.28 E-value=2.6e+02 Score=26.10 Aligned_cols=85 Identities=11% Similarity=0.046 Sum_probs=49.4
Q ss_pred cceeecccCcCccccccCCCCCcccccCCCcceeEEEEeeeecCCEEEEEEcCCCCCCCCCHHHH---HHHHHHHHHHHc
Q psy504 3 HMKFILRLSPARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLV---EEILTAVEAIRG 79 (358)
Q Consensus 3 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~V~~Itlnrp~~~Nal~~~m~---~eL~~~l~~~~~ 79 (358)
|+|+.-++.|...+.++-..++....... ..+++...-...+.-.+|++-+++.. ..+.+.+ .+..+.|.++..
T Consensus 1 ~lk~~a~l~~~~~~~pQ~g~~~~~~~~~~--~~~Rv~~~p~~~G~~~~iR~~~~~~~-~~~l~~lg~~~~~~~~l~~~~~ 77 (264)
T cd01129 1 RLKILAALDIAERRKPQDGRIRLKLKGRE--IDLRVSTLPTIYGESVVLRILDKKNQ-ILDLEKLGLKPENLEIFRKLLE 77 (264)
T ss_pred CeEEecCCCchhcccCcCceEEEEECCcE--EEEEEEEeecCCCCEEEEEEeCCccC-CCCHHHcCCCHHHHHHHHHHHh
Confidence 67888888888877777777666554433 44555554444556678888765422 3333322 333344444443
Q ss_pred CCCceEEEEeec
Q psy504 80 DEEVRCVLLRSL 91 (358)
Q Consensus 80 d~~vrvVVltg~ 91 (358)
.+. ..++++|.
T Consensus 78 ~~~-GlilisG~ 88 (264)
T cd01129 78 KPH-GIILVTGP 88 (264)
T ss_pred cCC-CEEEEECC
Confidence 332 46788886
No 163
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=29.38 E-value=53 Score=30.46 Aligned_cols=91 Identities=13% Similarity=0.140 Sum_probs=59.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCceEEEE--eecCCCceecCCCchhccccCHHH---HHHHHHHHHHHHHHHHcCCCc
Q psy504 59 RNALNATLVEEILTAVEAIRGDEEVRCVLL--RSLVKDVFCAGADLKHRLTLNEDQ---IRSFVSTLRYMTCQLESIPVP 133 (358)
Q Consensus 59 ~Nal~~~m~~eL~~~l~~~~~d~~vrvVVl--tg~gg~~FsaG~Dl~~~~~~~~~~---~~~~~~~~~~l~~~i~~~~kP 133 (358)
...+..+.-..|.+++.+.-++..-|.||+ -.. +..++- .++ ...+.....+.+..-+...-|
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~-sQa~gr-----------reEllGi~~alAhla~a~a~AR~~GHp 107 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVP-SQAYGR-----------REELLGINQALAHLAKAYALARLAGHP 107 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCC-ccccch-----------HHHHhhHHHHHHHHHHHHHHHHHcCCC
Confidence 467888777778777766654433344333 333 333331 222 334444555556666788999
Q ss_pred EEEeeccccccCCc-eeeccccEEEEcCC
Q psy504 134 VLAVLDGSAYGGGL-EMALACDIRVAASN 161 (358)
Q Consensus 134 vIaavnG~a~GgG~-~lal~cD~riase~ 161 (358)
+|+.|-|.+++||| .-.+.+|..||-++
T Consensus 108 vI~Lv~G~A~SGaFLA~GlqA~rl~AL~g 136 (234)
T PF06833_consen 108 VIGLVYGKAMSGAFLAHGLQANRLIALPG 136 (234)
T ss_pred eEEEEecccccHHHHHHHHHhcchhcCCC
Confidence 99999999999997 57778888887663
No 164
>PF08104 Antimicrobial_9: Ponericin L family; InterPro: IPR012528 This family consists of the ponericin L family of antimicrobial peptides that are isolated from the venom of the predatory ant Pachycondyla goeldii (Ponerine ant). Ponericin L family shares similarities with dermaseptins. Ponericin L may adopt an amphipathic alpha-helical structure in polar environments and these peptides exhibit a defensive role against microbial pathogens arising from prey introduction and/or ingestion [].; GO: 0045087 innate immune response, 0005576 extracellular region
Probab=29.22 E-value=11 Score=21.24 Aligned_cols=11 Identities=55% Similarity=1.005 Sum_probs=8.7
Q ss_pred eehhhceeeee
Q psy504 344 ILKEMWMEIKF 354 (358)
Q Consensus 344 ~~~~~~~~~~~ 354 (358)
.|||.|..||=
T Consensus 1 llkelwtkikg 11 (24)
T PF08104_consen 1 LLKELWTKIKG 11 (24)
T ss_pred ChHHHHHHhcc
Confidence 47999998873
No 165
>PRK06091 membrane protein FdrA; Validated
Probab=27.25 E-value=1.7e+02 Score=30.70 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccc
Q psy504 69 EILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAY 143 (358)
Q Consensus 69 eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~ 143 (358)
.+.++++.+.+|++.++|++.+. +.. +..+ + +++.....+.||+|+..-|..-
T Consensus 239 ~~~D~L~~L~~DP~TkvIvly~k-ppa---------------E~v~---~---~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 239 SALTALEMLSADEKSEVIAFVSK-PPA---------------EAVR---L---KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEe-cCc---------------hHHH---H---HHHHHHhhCCCCEEEEEecCCc
Confidence 34566666677777777777775 210 1111 1 3444555569999999988644
No 166
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=26.89 E-value=4.5e+02 Score=25.49 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=49.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHH
Q psy504 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQL 127 (358)
Q Consensus 48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i 127 (358)
...|....| .++.+-+++|.+.+.....+.+ .||+.|.-++.+.. +.+.++.+.+
T Consensus 101 ~Tein~~Gp----~is~~~~~~~l~~~~~~l~~~d--~VvlsGSlP~g~~~-------------------d~y~~li~~~ 155 (310)
T COG1105 101 ETEINFPGP----EISEAELEQFLEQLKALLESDD--IVVLSGSLPPGVPP-------------------DAYAELIRIL 155 (310)
T ss_pred EEEecCCCC----CCCHHHHHHHHHHHHHhcccCC--EEEEeCCCCCCCCH-------------------HHHHHHHHHH
Confidence 555555444 4899999999999999665655 48999874432221 2344566677
Q ss_pred HcCCCcEEEeecccccc
Q psy504 128 ESIPVPVLAVLDGSAYG 144 (358)
Q Consensus 128 ~~~~kPvIaavnG~a~G 144 (358)
....+.+|.-..|.++=
T Consensus 156 ~~~g~~vilD~Sg~~L~ 172 (310)
T COG1105 156 RQQGAKVILDTSGEALL 172 (310)
T ss_pred HhcCCeEEEECChHHHH
Confidence 77788888888887763
No 167
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=26.27 E-value=1.4e+02 Score=31.36 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=40.2
Q ss_pred eecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccccCCceeec
Q psy504 96 FCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMAL 151 (358)
Q Consensus 96 FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~GgG~~lal 151 (358)
+-.|.+..++...+.+...+-+..+.+.+..+..+..|+|.+||-+..---.++..
T Consensus 337 ~hgg~~~~~l~~en~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~ 392 (557)
T PRK13505 337 MHGGVAKDDLKEENVEALKKGFANLERHIENIRKFGVPVVVAINKFVTDTDAEIAA 392 (557)
T ss_pred HcCCCChhhccccCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHH
Confidence 34456666665555566666777888888899999999999999887655444443
No 168
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=26.23 E-value=16 Score=36.69 Aligned_cols=92 Identities=8% Similarity=0.104 Sum_probs=52.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEE--eecCCCceecCCCchhccccCHHH---HHHHH-HHHH
Q psy504 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL--RSLVKDVFCAGADLKHRLTLNEDQ---IRSFV-STLR 121 (358)
Q Consensus 48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVl--tg~gg~~FsaG~Dl~~~~~~~~~~---~~~~~-~~~~ 121 (358)
|++|++. .|+.....+|..++..++++. ++++|| ++.+|+..+...++..+.-....- ..+.- ...+
T Consensus 205 IGyI~I~------~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~ 277 (406)
T COG0793 205 IGYIRIP------SFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVY 277 (406)
T ss_pred EEEEEec------ccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeec
Confidence 8888874 466667778999999998776 788887 566566666666654432210000 00000 0000
Q ss_pred HHHHHHHcCCCcEEEeeccccccCC
Q psy504 122 YMTCQLESIPVPVLAVLDGSAYGGG 146 (358)
Q Consensus 122 ~l~~~i~~~~kPvIaavnG~a~GgG 146 (358)
.-...-...++|+|..||+....++
T Consensus 278 ~~~~~~~~~~~PlvvLvn~~SASAs 302 (406)
T COG0793 278 FSASGEALYDGPLVVLVNEGSASAS 302 (406)
T ss_pred cccccccCCCCCEEEEECCCCccHH
Confidence 0000001468999999998876554
No 169
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=25.43 E-value=2.4e+02 Score=27.22 Aligned_cols=31 Identities=6% Similarity=0.099 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEee
Q psy504 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRS 90 (358)
Q Consensus 60 Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg 90 (358)
--++++.+.+|.+.+++.-+++++..+|+|.
T Consensus 55 s~~t~~~w~~la~~i~~~~~~~~~dG~VVtH 85 (323)
T smart00870 55 SNMTPADWLKLAKRINEALADDGYDGVVVTH 85 (323)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEec
Confidence 4589999999999998865666666666654
No 170
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=24.62 E-value=56 Score=28.07 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=19.2
Q ss_pred CCceEEEEeecCCCceecCCCchhcc
Q psy504 81 EEVRCVLLRSLVKDVFCAGADLKHRL 106 (358)
Q Consensus 81 ~~vrvVVltg~gg~~FsaG~Dl~~~~ 106 (358)
+++++.=+.|. ....|+|+||+-..
T Consensus 78 ESi~v~D~Agn-~hVLCaGIDLNPAi 102 (178)
T PF12268_consen 78 ESIKVKDLAGN-NHVLCAGIDLNPAI 102 (178)
T ss_pred cccccccCCCC-ceeEEecccCCHhH
Confidence 35566777787 88999999998643
No 171
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=24.14 E-value=3.2e+02 Score=26.96 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=28.6
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEee
Q psy504 51 LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRS 90 (358)
Q Consensus 51 Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg 90 (358)
-.+|-+. .-|+++.+.+|.+.+.+.-.++++..||+|-
T Consensus 71 ~~~ni~S--~~m~~~~w~~la~~I~~~~~~~~~dGvVItH 108 (351)
T COG0252 71 QVLNIDS--SDMTPEDWLRLAEAINEALDDGDVDGVVITH 108 (351)
T ss_pred EeccCCc--ccCCHHHHHHHHHHHHHHhccCCCCeEEEeC
Confidence 3344443 5689999999999999998888766666655
No 172
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=22.08 E-value=2.8e+02 Score=25.66 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=48.3
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHH--------HHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHH
Q psy504 46 PGIVELCMNRPQARNALNATLVEEILTA--------VEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFV 117 (358)
Q Consensus 46 ~~V~~Itlnrp~~~Nal~~~m~~eL~~~--------l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~ 117 (358)
..|++|++-. .|+ +.+|...+..+ +.+...+++..+||+-|. ||.|-=|.. ..-...
T Consensus 3 ~kvaVi~fpG---tN~-d~d~~~A~~~aG~~~~~V~~~d~~~~~~~d~vv~pGG----FSyGDyLr~-------Gaiaa~ 67 (231)
T COG0047 3 PKVAVLRFPG---TNC-DYDMAAAFERAGFEAEDVWHSDLLLGRDFDGVVLPGG----FSYGDYLRA-------GAIAAI 67 (231)
T ss_pred ceEEEEEcCC---cCc-hHHHHHHHHHcCCCceEEEeeecccCCCccEEEEcCC----CCcccccCc-------chHHhh
Confidence 3577777743 355 56777666631 111122225678888664 998865541 111112
Q ss_pred HHHHHHHHHHHcCCCcEEEeeccccc
Q psy504 118 STLRYMTCQLESIPVPVLAVLDGSAY 143 (358)
Q Consensus 118 ~~~~~l~~~i~~~~kPvIaavnG~a~ 143 (358)
..+.+-+..+..-.+|++..+||.=+
T Consensus 68 ~~v~~~v~~~a~~g~~vLGICNGfQi 93 (231)
T COG0047 68 APVMDEVREFAEKGKPVLGICNGFQI 93 (231)
T ss_pred HHHHHHHHHHHHCCCeEEEEcchhHH
Confidence 33444455566699999999998744
No 173
>KOG1255|consensus
Probab=21.85 E-value=2.2e+02 Score=26.71 Aligned_cols=56 Identities=18% Similarity=0.335 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeecccc
Q psy504 69 EILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSA 142 (358)
Q Consensus 69 eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a 142 (358)
.+.++|+.+-.|++.+.+|+-|.-|. ..+++..+|.... .-..-+||+++.+-|..
T Consensus 218 ~FID~L~vFl~D~~t~GIiliGEIGG-------------~AEe~AA~flk~~-----nSg~~~kPVvsFIAG~t 273 (329)
T KOG1255|consen 218 NFIDCLEVFLEDPETEGIILIGEIGG-------------SAEEEAAEFLKEY-----NSGSTAKPVVSFIAGVT 273 (329)
T ss_pred cHHHHHHHHhcCcccceEEEEeccCC-------------hhhHHHHHHHHHh-----ccCCCCCceeEEeeccc
Confidence 46778888889999999999997321 1223333443321 12347899999887764
No 174
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=21.74 E-value=2.4e+02 Score=27.75 Aligned_cols=42 Identities=5% Similarity=0.160 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEee
Q psy504 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRS 90 (358)
Q Consensus 48 V~~Itlnrp~~~Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg 90 (358)
+-...+.+-+ ..-++++.+.+|.+.+++.-.++++..+|+|.
T Consensus 72 i~~~~~~~id-S~~mt~~dw~~la~~I~~~~~~~~~~GiVVtH 113 (349)
T TIGR00520 72 IKGEQIVNVG-SQDMNEEVLLKLAKGINELLASDDYDGIVITH 113 (349)
T ss_pred EEEEEccCCC-cccCCHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 3344443333 35589999999999998887766666666665
No 175
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=21.64 E-value=2.2e+02 Score=27.15 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCCceEEEEeec
Q psy504 69 EILTAVEAIRGDEEVRCVLLRSL 91 (358)
Q Consensus 69 eL~~~l~~~~~d~~vrvVVltg~ 91 (358)
++.+.++.+.+||+.++|++...
T Consensus 185 ~~~D~l~~l~~Dp~T~~I~lylE 207 (286)
T TIGR01019 185 SFIDVLEAFEKDPETEAIVMIGE 207 (286)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEe
Confidence 56677888888899999999887
No 176
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=20.78 E-value=3.2e+02 Score=27.52 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEeec
Q psy504 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSL 91 (358)
Q Consensus 60 Nal~~~m~~eL~~~l~~~~~d~~vrvVVltg~ 91 (358)
--++++.+.+|.+.+.+.-.+..-.+||..|+
T Consensus 118 ~~mtp~~w~~La~~I~~~~~~~~dGvVVtHGT 149 (404)
T TIGR02153 118 ENMKPEYWIKIAEAVAKALKEGADGVVVAHGT 149 (404)
T ss_pred hhCCHHHHHHHHHHHHHHhhcCCCcEEEecCC
Confidence 44788888999998887655422245555555
No 177
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=20.61 E-value=79 Score=32.11 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeeccccc
Q psy504 68 EEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAY 143 (358)
Q Consensus 68 ~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG~a~ 143 (358)
-.+.+.++.+.+|++.++|++...+ +- | .+++ .+..++... .||+|+..-|..-
T Consensus 189 ~~~~d~l~~l~~D~~t~~I~ly~E~---~~---~-----------~~~f----~~aa~~a~~-~KPVv~~k~Grs~ 242 (447)
T TIGR02717 189 IDESDLLEYLADDPDTKVILLYLEG---IK---D-----------GRKF----LKTAREISK-KKPIVVLKSGTSE 242 (447)
T ss_pred CCHHHHHHHHhhCCCCCEEEEEecC---CC---C-----------HHHH----HHHHHHHcC-CCCEEEEecCCCh
Confidence 4667888888889999999998872 10 1 1222 333444444 8999999998864
No 178
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=20.31 E-value=3.9e+02 Score=25.73 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCceEEEEeecCCCceecCCCchhccccCHHHHHHHHHHHHHHHHHHHcCCCcEEEeecc
Q psy504 61 ALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDG 140 (358)
Q Consensus 61 al~~~m~~eL~~~l~~~~~d~~vrvVVltg~gg~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaavnG 140 (358)
--+.+.+..+..-++++. +...-++|+||+ +-. -.+..+ ..++..+.+++.-+.+..+|++..|=|
T Consensus 79 ~~~~~hl~~~y~~~~~i~-~~~~DG~IITGA-p~e---~~~fed---------v~YW~El~~i~~w~~~~~~s~LgICwG 144 (302)
T PRK05368 79 NTPAEHLENFYCTFEDIK-DEKFDGLIITGA-PVE---QLPFED---------VDYWDELKEILDWAKTHVTSTLFICWA 144 (302)
T ss_pred CCCHHHHHHhccCHHHhc-cCCCCEEEEcCC-CCC---CccCCC---------CchHHHHHHHHHHHHHcCCCEEEEcHH
Confidence 347788899999999986 467889999998 311 112211 123445666666666677888865544
Q ss_pred c
Q psy504 141 S 141 (358)
Q Consensus 141 ~ 141 (358)
+
T Consensus 145 a 145 (302)
T PRK05368 145 A 145 (302)
T ss_pred H
Confidence 4
Done!