RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy504
(358 letters)
>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 181 bits (462), Expect = 2e-55
Identities = 73/144 (50%), Positives = 101/144 (70%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
P +V++ +NRP+A NAL+ L+EE+ + I + VR V+L + FCAGADLK R
Sbjct: 12 PHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKER 71
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
+NE+Q+R VS +R +E +P PV+A ++G A GGGLE+ALACD R+AA + +G
Sbjct: 72 AGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLG 131
Query: 166 LVETKLAIIPGAGGTQRLPRIVGI 189
L ET LAIIPGAGGTQRLPR++G+
Sbjct: 132 LTETTLAIIPGAGGTQRLPRLIGV 155
>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase.
Length = 251
Score = 177 bits (451), Expect = 6e-54
Identities = 72/142 (50%), Positives = 102/142 (71%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GIVEL ++RP+A+NA+ ++ + +A E I+ D R V+LRS V VFCAGADLK R
Sbjct: 4 GIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERR 63
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
++ +++ FV++LR LE++ +P +AV++G+A GGGLE+AL+CD+R+ GL
Sbjct: 64 KMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGL 123
Query: 167 VETKLAIIPGAGGTQRLPRIVG 188
ET LAIIPGAGGTQRLPR+VG
Sbjct: 124 PETGLAIIPGAGGTQRLPRLVG 145
>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate
synthase, methylmalonyl-CoA decarboxylase,
3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA
isomerase. Many of these play important roles in fatty
acid metabolism. In addition to a conserved structural
core and the formation of trimers (or dimers of
trimers), a common feature in this superfamily is the
stabilization of an enolate anion intermediate derived
from an acyl-CoA substrate. This is accomplished by two
conserved backbone NH groups in active sites that form
an oxyanion hole.
Length = 195
Score = 163 bits (416), Expect = 2e-49
Identities = 66/151 (43%), Positives = 98/151 (64%), Gaps = 3/151 (1%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
G+ + +NRP+ RNAL+ +++E+ A++ D +VR V+L FCAGADLK
Sbjct: 5 RDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTG-AGKAFCAGADLK 63
Query: 104 --HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
L+ ++ R+F+ L+ + L +P PV+A ++G+A GGGLE+ALACDIR+AA +
Sbjct: 64 ELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAED 123
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+ GL E KL ++PG GGTQRLPR+VG A
Sbjct: 124 AKFGLPEVKLGLVPGGGGTQRLPRLVGPARA 154
>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family. This family
contains a diverse set of enzymes including: Enoyl-CoA
hydratase. Napthoate synthase. Carnitate racemase.
3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA
delta-isomerase.
Length = 245
Score = 152 bits (386), Expect = 3e-44
Identities = 66/146 (45%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G+ + ++RP+A NAL+A L+ E++ A+E + D V+ ++L F AGAD+K
Sbjct: 7 GVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGG-PGAFSAGADIKEMA 65
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
Q F + + +LE +P PV+A ++G A GGGLE+ALACD R+AA N + GL
Sbjct: 66 AEPLAQQAQFSLEAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAKFGL 125
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLA 192
E KL IIPGAGGTQRLPRI+G+ A
Sbjct: 126 PEVKLGIIPGAGGTQRLPRIIGVSAA 151
>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid
metabolism].
Length = 257
Score = 150 bits (380), Expect = 3e-43
Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 4/163 (2%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
GI + +NRP+ NALN +++E+ A++ D +VR V+L F AGADLK
Sbjct: 11 REDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTG-AGKAFSAGADLK 69
Query: 104 HRLTLNEDQI-RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
L+ + + + + + L +P PV+A ++G A GGGLE+ALACDIR+AA +
Sbjct: 70 ELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDA 129
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMS 205
+ GL E L ++PG GGTQRLPR++G A E LL + +S
Sbjct: 130 KFGLPEVNLGLLPGDGGTQRLPRLLGRGRA--KELLLTGEPIS 170
>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 715
Score = 136 bits (345), Expect = 2e-35
Identities = 57/146 (39%), Positives = 88/146 (60%), Gaps = 4/146 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI EL + P + N L+ + + A++A+ +++ +LL S KD F GAD+ L
Sbjct: 16 GIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTS-AKDAFIVGADITEFL 74
Query: 107 TL---NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+L E+++ ++ + +LE +PVP +A ++G A GGG E LA D RVA+ + R
Sbjct: 75 SLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDAR 134
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGI 189
+GL ETKL I+PG GGT RLPR++G
Sbjct: 135 IGLPETKLGIMPGFGGTVRLPRLIGA 160
>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 129 bits (326), Expect = 3e-35
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 8/150 (5%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
G++ + +NRP +NAL A + + + A+EA D VR V+L + F AG D+K
Sbjct: 14 GVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGR-AFSAGGDIKDFP 72
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
D++ LR + ++P PV+A ++G A G G+ +ALACD+ A+ + +
Sbjct: 73 KAPPKPPDELAPVNRFLR----AIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAK 128
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
L KL + P AGG+ LPR++G AA
Sbjct: 129 FSLPFAKLGLCPDAGGSALLPRLIGRARAA 158
>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated.
Length = 260
Score = 124 bits (314), Expect = 1e-33
Identities = 60/146 (41%), Positives = 88/146 (60%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
I + +NRP+A NALN+ ++E+ T ++ I D+ V V+L + F AGAD+
Sbjct: 13 HIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMK 72
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
LNE++ R F + +LE++ PV+A ++G A GGG E+++ACDIR+A+ + G
Sbjct: 73 DLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQ 132
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLA 192
E L I PG GGTQRL RIVG A
Sbjct: 133 PEVGLGITPGFGGTQRLARIVGPGKA 158
>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional.
Length = 255
Score = 121 bits (306), Expect = 2e-32
Identities = 61/150 (40%), Positives = 85/150 (56%), Gaps = 11/150 (7%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
++ L +NRP+ARNALN L+ +++ +EA D + ++ + F AGADL
Sbjct: 11 RVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNAR-FFAAGADL---- 65
Query: 107 TLNEDQIRSFVSTL---RYMTCQ-LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
NE + +TL R Q L++ P++A ++G A G G E+AL CDI +A N
Sbjct: 66 --NEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENA 123
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
R GL E L I+PGAGGTQRL R VG LA
Sbjct: 124 RFGLPEITLGIMPGAGGTQRLIRSVGKSLA 153
>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 116 bits (293), Expect = 2e-30
Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 5/149 (3%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ L +NRP+ARNAL+A L + A+ D++V V+L FCAG DLK
Sbjct: 11 HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTG-ADPAFCAGLDLKE 69
Query: 105 RLTLNEDQIRSFVST-LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
L D L + ++ PV+ ++G+A GGLE+ALACDI +A+ R
Sbjct: 70 ---LGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERAR 126
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
++ I+PG G + RLP+ VGI A
Sbjct: 127 FADTHARVGILPGWGLSVRLPQKVGIGRA 155
>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional.
Length = 261
Score = 114 bits (288), Expect = 7e-30
Identities = 60/149 (40%), Positives = 85/149 (57%), Gaps = 9/149 (6%)
Query: 44 ERP--GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGAD 101
ERP G+ L +NRP+ARNALN + +++ + D ++R ++L + VF AGAD
Sbjct: 12 ERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTG-GEKVFAAGAD 70
Query: 102 LKHRLTLN--EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
+K T E +R T RY + P PV+A ++G A GGG E+A+ DI VA
Sbjct: 71 IKEFATAGAIEMYLRH---TERYWE-AIAQCPKPVIAAVNGYALGGGCELAMHADIIVAG 126
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
+ G E K+ ++PGAGGTQRL R VG
Sbjct: 127 ESASFGQPEIKVGLMPGAGGTQRLVRAVG 155
>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 114 bits (287), Expect = 1e-29
Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + +N P A NAL++ ++ E+ ++ + D+ VR V++ + F AGAD+K
Sbjct: 11 HVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGR-FFSAGADIKEFT 68
Query: 107 TLNE-DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
++ E +Q + ++E PV+A + G+A GGGLE+A++C IR A + ++G
Sbjct: 69 SVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLG 128
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAA 193
L E L +IPG GTQRLPR VG A
Sbjct: 129 LPELNLGLIPGFAGTQRLPRYVGKAKAL 156
>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 113 bits (284), Expect = 4e-29
Identities = 58/159 (36%), Positives = 84/159 (52%), Gaps = 10/159 (6%)
Query: 44 ERPG-IVELCMNRPQARNALNA-TLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGAD 101
ER G IV L MNRP+ RNAL+ V+ ++ A AI D VR V+L F +G +
Sbjct: 8 ERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGT-AFSSGGN 66
Query: 102 LKH------RLTLNEDQIR-SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD 154
+K + IR + ++ + L ++ VPV+A ++G A G G ++A CD
Sbjct: 67 VKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCD 126
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
IR+A+ R KL +IPG GG LPRI+G+ AA
Sbjct: 127 IRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAA 165
>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 708
Score = 118 bits (297), Expect = 4e-29
Identities = 49/138 (35%), Positives = 81/138 (58%), Gaps = 4/138 (2%)
Query: 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTL-NEDQIRSFVS 118
N L A E++ ++ +R D+E++ V+ S D F AGAD+ + +
Sbjct: 29 NTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALAR 88
Query: 119 TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--VRMGLVETKLAIIPG 176
+ + ++E++P+PV+A + G+ GGGLE+ALAC RV + +GL E +L ++PG
Sbjct: 89 QGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPG 148
Query: 177 AGGTQRLPRIVGIPLAAL 194
+GGTQRLPR++G+ AL
Sbjct: 149 SGGTQRLPRLIGV-STAL 165
>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Activities include: enoyl-CoA hydratase (EC 4.2.1.17),
dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8),
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadB. This model excludes the
FadJ family represented by SP:P77399 [Fatty acid and
phospholipid metabolism, Degradation].
Length = 714
Score = 118 bits (296), Expect = 4e-29
Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 4/145 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI EL + P + N + + + A++AI+ ++ V+L S KD F GAD+ L
Sbjct: 16 GIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTS-GKDAFIVGADITEFL 74
Query: 107 TL---NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
L + ++ ++ + +LE +PVP +A ++G A GGG E LA D R+A +
Sbjct: 75 GLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAK 134
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVG 188
+GL ETKL I+PG GGT RLPR++G
Sbjct: 135 IGLPETKLGIMPGFGGTVRLPRVIG 159
>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 112 bits (282), Expect = 5e-29
Identities = 64/167 (38%), Positives = 92/167 (55%), Gaps = 8/167 (4%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R GI L +NRP+ NALN L++ +L ++AI DE VR V+L F AGAD+ H
Sbjct: 10 RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADI-H 68
Query: 105 RLTLN-----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
+ + + +R FV + MT +LE+ P PV+A ++G A+GGG E+ A + +A+
Sbjct: 69 EFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIAS 128
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSS 206
E +L + P GGTQRLPR+ G A E LL D S+
Sbjct: 129 ERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRA--LELLLTGDAFSA 173
>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 111 bits (279), Expect = 1e-28
Identities = 59/148 (39%), Positives = 85/148 (57%), Gaps = 13/148 (8%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R G++ L NRP+A NALN L++E+ A+ A DE + +++ K F AGAD+K
Sbjct: 13 RVGLITL--NRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEK-AFAAGADIK- 68
Query: 105 RLTLNEDQIRSFVSTLR--YMTC--QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
E SF+ + Y+T ++ I PV+A + G A GGG E+A+ CDI +AA
Sbjct: 69 -----EMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAAD 123
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVG 188
+ G E KL ++PG GG+QRL R VG
Sbjct: 124 TAKFGQPEIKLGVLPGMGGSQRLTRAVG 151
>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 103 bits (258), Expect = 2e-25
Identities = 47/156 (30%), Positives = 84/156 (53%), Gaps = 14/156 (8%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI ++ +NRP NAL+ + EE++ ++ ++ D +R V+L S FCAG D+K
Sbjct: 12 GIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVIL-SGEGGAFCAGLDVK--- 67
Query: 107 TLNEDQIRSFV----------STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
++ + + + ++ +PVPV+A L+G +GGGL++AL DIR
Sbjct: 68 SVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIR 127
Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+AA + ++ ++E K ++P GT L +V +A
Sbjct: 128 IAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVA 163
>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 98.6 bits (246), Expect = 6e-24
Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 4/132 (3%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL---K 103
G+ L +NRP+ NAL+A ++ E+ TA + D VR V+L K FCAG DL +
Sbjct: 14 GVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKS-FCAGGDLGWMR 72
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
++T + L M L +P P++ + G A+GGG+ + CD+ +A S R
Sbjct: 73 AQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGAR 132
Query: 164 MGLVETKLAIIP 175
GL ET+L +IP
Sbjct: 133 FGLTETRLGLIP 144
>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 98.5 bits (246), Expect = 8e-24
Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL-- 102
R + + +NRP RNA N T++ E+ A A+ D+ VR V+L K FCAGADL
Sbjct: 11 RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGK-AFCAGADLNW 69
Query: 103 -KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
K ++D+ R+ L M + P PV+A + G AY GG+ + ACDI VAA +
Sbjct: 70 MKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADH 129
Query: 162 VRMGLVETKLAIIP 175
L E +L +IP
Sbjct: 130 AVFCLSEVRLGLIP 143
>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Plays a minor role in aerobic beta-oxidation of fatty
acids. FadJI complex is necessary for anaerobic growth
on short-chain acids with nitrate as an electron
acceptor. Activities include: enoyl-CoA hydratase (EC
4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadJ (aka YfcX). This model
excludes the FadB of TIGR02437 equivalog model [Fatty
acid and phospholipid metabolism, Degradation].
Length = 699
Score = 100 bits (251), Expect = 3e-23
Identities = 51/150 (34%), Positives = 88/150 (58%), Gaps = 4/150 (2%)
Query: 47 GIVELCMNRPQAR-NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
GI L ++ P + N L A +++ + ++ D+ +R ++L S D F AGAD+
Sbjct: 10 GIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISML 69
Query: 106 LTL-NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN--V 162
+ ++ + + +LE++P+PV+A + G+ GGGLE+ALAC RV + +
Sbjct: 70 AACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKT 129
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+GL E +L ++PG+GGTQRLPR++G+ A
Sbjct: 130 VLGLPEVQLGLLPGSGGTQRLPRLIGVSTA 159
>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional.
Length = 256
Score = 96.6 bits (241), Expect = 3e-23
Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
G+ L + + N L ++ + A+ + D +VR ++LR + F GAD+K
Sbjct: 15 RGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEM 74
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
TL++ +F+S LR + + PVPV+A + G GGGLE+A ACD+R+AA + + G
Sbjct: 75 ATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFG 134
Query: 166 LVETKLAIIPGAGGTQRLPRIVG 188
+ E ++ IP LPR++G
Sbjct: 135 MPEVRVG-IPSVIHAALLPRLIG 156
>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 95.5 bits (238), Expect = 1e-22
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 44 ERPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
ER G + + +NRP+ NAL+ E+ + D E ++ F AG DL
Sbjct: 9 ERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDL 68
Query: 103 KHRLTLNEDQI--RSFVS-TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
K + + F T R+ + P++A ++G A GGG E+ALACD+ VAA
Sbjct: 69 KEQAAGGKRGWPESGFGGLTSRFDLDK------PIIAAVNGVAMGGGFELALACDLIVAA 122
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
N L E ++ + AGG RLPR +G+ A
Sbjct: 123 ENATFALPEPRVGLAALAGGLHRLPRQIGLKRA 155
>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 93.5 bits (233), Expect = 4e-22
Identities = 53/145 (36%), Positives = 74/145 (51%), Gaps = 9/145 (6%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK-HR 105
G+ + +NRP RNALN L+ + A + E VR V+L D FCAG DL R
Sbjct: 11 GVATIGLNRPAKRNALNDGLIAALRAAFARL--PEGVRAVVLHG-EGDHFCAGLDLSELR 67
Query: 106 LTLNEDQIRSFVSTLRYMTC--QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
D + R+ +++ VPV+A L G+ GGGLE+A A IRVA +
Sbjct: 68 ---ERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTY 124
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVG 188
L E + I G GG+ R+PR++G
Sbjct: 125 FALPEGQRGIFVGGGGSVRVPRLIG 149
>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase;
Validated.
Length = 249
Score = 92.3 bits (230), Expect = 9e-22
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 6/155 (3%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
GI ++ M +NA + L +++ A + I D + V+L + F G +
Sbjct: 13 EGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGY-PNYFATGGTQEGL 71
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
L+L + +F Y + L P+PV+A + G A GGGL + L DI V +
Sbjct: 72 LSL-QTGKGTFTEANLY-SLALN-CPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYT 128
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLN 200
K PG G T LP +G+ L E LL
Sbjct: 129 ANFMKYGFTPGMGATAILPEKLGLALGQ--EMLLT 161
>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional.
Length = 243
Score = 92.4 bits (230), Expect = 1e-21
Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 7/114 (6%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
++ + + RP+ RNALNA L EE+ AV DE R ++L VFCAGADL
Sbjct: 8 GQVLTIELQRPERRNALNAELCEELREAVRKA-VDESARAIVLTG-QGTVFCAGADLSGD 65
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
+ ++ F L M +++ PVPV+A ++G A G GL++A+ACD+RV A
Sbjct: 66 VYADD-----FPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVA 114
>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional.
Length = 296
Score = 92.8 bits (231), Expect = 1e-21
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
GI + +NRP NA T+ E++ A +A D+ VR V++ + FCAGADL
Sbjct: 13 GIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGR-AFCAGADLSAGG 71
Query: 104 HRLTLNEDQIRSFVS-------------------TLRYMTCQLESIPVPVLAVLDGSAYG 144
+ L+ + TLR PV+A ++G A G
Sbjct: 72 NTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDS-----LKPVIAAVNGPAVG 126
Query: 145 GGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
G M LA DIR+A++ R G V + I+P A + LPR+VG+ A
Sbjct: 127 VGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTA 174
>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional.
Length = 261
Score = 89.7 bits (223), Expect = 1e-20
Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 5/158 (3%)
Query: 36 QIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLV-KD 94
Q + + + + N P RNAL+ L+++++ A+ + E+R V+LR+
Sbjct: 4 QYVNVVTINKIATIT--FNNPAKRNALSKVLIDDLMQALSDLN-RPEIRVVILRAPSGSK 60
Query: 95 VFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD 154
V+ AG D+ + D + S+ LR + ++ P PV+A+++GS +GG E+ ++CD
Sbjct: 61 VWSAGHDIHELPSGGRDPL-SYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCD 119
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+ +AAS + L + G G +
Sbjct: 120 LIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIV 157
>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 89.4 bits (222), Expect = 1e-20
Identities = 52/151 (34%), Positives = 73/151 (48%), Gaps = 8/151 (5%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G+ + +N P RNA+ A + ++ AV A D +V +++ K FCAGADL
Sbjct: 12 GVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGK-AFCAGADLT--- 67
Query: 107 TLNEDQIRSFVSTLR--YMT-CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
L R LR Y + S P+P +A ++G+A G GL +ALA D+R+A
Sbjct: 68 ALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKAL 127
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAAL 194
KL + PG G T L R VG P A
Sbjct: 128 FDARFQKLGLHPGGGATWMLQRAVG-PQVAR 157
>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 89.6 bits (223), Expect = 1e-20
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 12/153 (7%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL---- 102
+ ++ +NRP NA+N E+ + D EVR V+L K F G DL
Sbjct: 15 HVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKH-FSYGIDLPAMA 73
Query: 103 -------KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDI 155
K L +R + L+ + PV+A + G GGG+++ ACD+
Sbjct: 74 GVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDM 133
Query: 156 RVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
R A+++ + + E L ++ G QRLPRI+G
Sbjct: 134 RYASADAKFSVREVDLGMVADVGSLQRLPRIIG 166
>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 88.9 bits (221), Expect = 2e-20
Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 17/130 (13%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R GI + NRP ARNA+ + E + EAI D +R V+LR F AG D+
Sbjct: 15 RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIA- 73
Query: 105 RLTLNEDQIRSFVS---TLRY------MTCQLESIPVPVLAVLDGSAYGGGLEMALACDI 155
Q R+F + + Y + LE + VP +A + G+ GGG +A ACD+
Sbjct: 74 -------QFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDL 126
Query: 156 RVAASNVRMG 165
R+A + R G
Sbjct: 127 RIATPSARFG 136
>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 88.5 bits (220), Expect = 2e-20
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 13/154 (8%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
R ++ + +NRP+ARNA+NA + + + A++ + D ++ +L FCAG DLK
Sbjct: 9 RRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTG-AGGTFCAGMDLK 67
Query: 104 HRLTLNEDQI--RSFVSTLRYMTCQLESIPV--PVLAVLDGSAYGGGLEMALACDIRVAA 159
I R F L P P++A ++G A GG E+ALACD+ VAA
Sbjct: 68 AFARGERPSIPGRGF--------GGLTERPPRKPLIAAVEGYALAGGFELALACDLIVAA 119
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
+ + GL E K ++ GG RLPR + +A
Sbjct: 120 RDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAM 153
>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha
subunit, mitochondrial. Members represent alpha subunit
of mitochondrial multifunctional fatty acid degradation
enzyme complex. Subunit activities include: enoyl-CoA
hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA
dehydrogenase (EC 1.1.1.35). Some characterization in
human , pig , and rat. The beta subunit has activity:
acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Length = 737
Score = 91.1 bits (226), Expect = 6e-20
Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 17/179 (9%)
Query: 22 NYSTSVSKEGRKLTQIIYHNSPERPGIVELC-MNRPQAR-NALNATLVEEILTAVEAIRG 79
+STS + R H E G V + ++ P ++ N L+ L E + +
Sbjct: 2 LFSTSAALMART------HRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWT 55
Query: 80 DEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTL----RYMTCQLESIPVPVL 135
+E ++ +L S F AGAD++ + + V+ L + M ++E P++
Sbjct: 56 NEAIKSAVLISGKPGSFVAGADIQ---MIAACKTAQEVTQLSQEGQEMFERIEKSQKPIV 112
Query: 136 AVLDGSAYGGGLEMALACDIRVAA--SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
A + GS GGGLE+ALAC R+A +GL E L ++PGAGGTQRLP++ G+P A
Sbjct: 113 AAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAA 171
>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 86.5 bits (215), Expect = 1e-19
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 9/142 (6%)
Query: 51 LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNE 110
L +N P A N A ++ + V + D++V +++ + F AGADL ++
Sbjct: 16 LTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDK 74
Query: 111 DQIRSFVSTLRYMTCQLESI----PVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
R R E++ V +A ++G A GGGLE ALACDIR+A +M L
Sbjct: 75 AVAREM---ARRFGEAFEALSAFRGV-SIAAINGYAMGGGLECALACDIRIAEEQAQMAL 130
Query: 167 VETKLAIIPGAGGTQRLPRIVG 188
E + ++P AGGTQ LP +VG
Sbjct: 131 PEASVGLLPCAGGTQNLPWLVG 152
>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 86.6 bits (215), Expect = 1e-19
Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 8/148 (5%)
Query: 51 LCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLN- 109
L ++ P ARNAL+ + + A+ D +R V+L FCAG +L RL N
Sbjct: 16 LTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTG-AGGFFCAGGNLN-RLLENR 73
Query: 110 ----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
Q S + L + + P PV+A ++G+A G G +ALACD+ VAA + +
Sbjct: 74 AKPPSVQAAS-IDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFV 132
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAA 193
+ K+ + P GG+ L R + LA
Sbjct: 133 MAYVKVGLTPDGGGSWFLARALPRQLAT 160
>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated.
Length = 222
Score = 84.1 bits (208), Expect = 5e-19
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 2/157 (1%)
Query: 32 RKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL 91
+ ++ + + G+ L ++RP NAL + EI+ A + ++V V+L
Sbjct: 2 NEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYG- 59
Query: 92 VKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMAL 151
++F AG D+ TL+ + + + + +IP P +A + G A G GL +AL
Sbjct: 60 GHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLAL 119
Query: 152 ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
A D RV+ NV+ G E + P G RL R G
Sbjct: 120 AADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAG 156
>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase.
Length = 265
Score = 85.2 bits (211), Expect = 6e-19
Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 14/152 (9%)
Query: 42 SPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFC 97
R GI + +NRP+A NAL ++ E+ A + + D+ V+ ++L R+ FC
Sbjct: 14 PKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRA-----FC 68
Query: 98 AGADLKHRLTLNEDQIRSFVSTLRYMT-CQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
+G DL T E+ + V + Q+E P++ ++G A G E+ALACDI
Sbjct: 69 SGVDL----TAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDIL 124
Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
VA+ + K I P G +Q+L RI+G
Sbjct: 125 VASRGAKFIDTHAKFGIFPSWGLSQKLSRIIG 156
>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA
hydratase paaB. This family of proteins are found
within apparent operons for the degradation of
phenylacetic acid. These proteins contain the enoyl-CoA
hydratase domain as detected by pfam00378. This activity
is consistent with current hypotheses for the
degradation pathway which involve the ligation of
phenylacetate with coenzyme A (paaF), hydroxylation
(paaGHIJK), ring-opening (paaN) and degradation of the
resulting fatty acid-like compound to a Krebs cycle
intermediate (paaABCDE).
Length = 256
Score = 84.1 bits (208), Expect = 1e-18
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 13/154 (8%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR- 105
G+ L +NRP N+ A + E+ A+E + D+ R ++L + FCAG DL R
Sbjct: 8 GVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRG-FCAGQDLSERN 65
Query: 106 ------LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
L + +R +L ++P+PV+ ++G A G G +ALACDI +AA
Sbjct: 66 PTPGGAPDLGRTIETFYNPLVR----RLRALPLPVVCAVNGVAAGAGANLALACDIVLAA 121
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
+ R K+ +IP +GGT LPR+VG A
Sbjct: 122 ESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAM 155
>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme
metabolism].
Length = 282
Score = 84.4 bits (209), Expect = 1e-18
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 6/161 (3%)
Query: 32 RKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSL 91
I Y S + GI ++ +NRP+ RNA V+E++ A R D V +LL
Sbjct: 15 EGYEDITYEKSVD--GIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGN 72
Query: 92 V--KDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ--LESIPVPVLAVLDGSAYGGGL 147
FC+G D K R + L + Q + ++P PV+A++ G A GGG
Sbjct: 73 GDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGH 132
Query: 148 EMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
+ + CD+ +AA N G K+ G G+ L RIVG
Sbjct: 133 VLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG 173
>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional.
Length = 261
Score = 83.6 bits (207), Expect = 2e-18
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 6/154 (3%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
I+E+ ++RP+A NA++A + R D E+R ++ + F AG DLK
Sbjct: 12 SILEITLDRPKA-NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLK-AA 69
Query: 107 TLNEDQIRSF-VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
E F +T ++ + PV+A ++G A+GGG E+ALA D V A N
Sbjct: 70 AEGEAPDADFGPGGFAGLT-EIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFA 128
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL 199
L E KL I+P +GG RLP+ +P A E ++
Sbjct: 129 LPEAKLGIVPDSGGVLRLPKR--LPPAIANEMVM 160
>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 82.0 bits (203), Expect = 5e-18
Identities = 50/143 (34%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G+ L ++ P RNAL+A LV ++ + A D VR V+L + FCAGADL
Sbjct: 15 GVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVL-THTGGTFCAGADLSEAG 73
Query: 107 TLNEDQIRSFVSTLRYMTCQLESI---PVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
D + V+ R MT L +I P PV+A +DG GG + ACDI VA
Sbjct: 74 GGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPEST 133
Query: 164 MGLVETKLAIIPGAGGTQRLPRI 186
L E ++ + P LPR+
Sbjct: 134 FALTEARIGVAPAIISLTLLPRL 156
>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional.
Length = 263
Score = 81.7 bits (202), Expect = 9e-18
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 6/159 (3%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
+R + + MNRP+ARNAL+ ++ ++ A + + D ++R +L FCAG DLK
Sbjct: 11 QRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTG-AGGAFCAGMDLK 69
Query: 104 HRLTLNE-DQIRSFVSTLRYMTCQLE--SIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
D + + L+ + P++A ++G A GG E+ DIRVA
Sbjct: 70 AATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGE 129
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL 199
+ + G+ E K ++ P G RL R IP + LL
Sbjct: 130 SAKFGISEAKWSLFPMGGSAVRLVR--QIPYTVACDLLL 166
>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 81.1 bits (201), Expect = 1e-17
Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 22/158 (13%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGADL 102
G+ L +NRP N+ + E+ A++ + D+ R +LL R FCAG DL
Sbjct: 13 GVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRG-----FCAGQDL 66
Query: 103 KHRLTLNEDQ-------IRSFVSTL-RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD 154
R I +F + L R +L ++P+PV+A ++G A G G +ALACD
Sbjct: 67 ADRDVTPGGAMPDLGESIETFYNPLVR----RLRALPLPVIAAVNGVAAGAGANLALACD 122
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
I +AA + K+ ++P +GGT LPR+VG+ A
Sbjct: 123 IVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARA 160
>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid
synthetase). This model represents an enzyme,
naphthoate synthase (dihydroxynaphthoic acid
synthetase), which is involved in the fifth step of the
menaquinone biosynthesis pathway. Together with
o-succinylbenzoate-CoA ligase (menE: TIGR01923), this
enzyme takes 2-succinylbenzoate and converts it into
1,4-di-hydroxy-2-naphthoate. Included above the trusted
cutoff are two enzymes from Arabadopsis thaliana and one
from Staphylococcus aureus which are identified as
putative enoyl-CoA hydratase/isomerases. These enzymes
group with the naphthoate synthases when building a tree
and when doing BLAST searches [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 259
Score = 80.7 bits (199), Expect = 2e-17
Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Query: 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK 93
I Y S + GI ++ +NRPQ RNA V+EI+ A++ R D ++ V+L
Sbjct: 1 FEDIRYEKSTD--GIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGD 58
Query: 94 DVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ--LESIPVPVLAVLDGSAYGGGLEMAL 151
FC+G D K R S V L + Q + + P PV+A+++G A GGG + +
Sbjct: 59 KAFCSGGDQKVR-GDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHM 117
Query: 152 ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
CD+ +AA N R G K+ G G+ + RIVG
Sbjct: 118 MCDLTIAAENARFGQTGPKVGSFDGGYGSSYMARIVG 154
>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated.
Length = 266
Score = 80.4 bits (199), Expect = 3e-17
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 10/126 (7%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R G+ L +NRPQA NAL+ ++ + A++AI D VR V+L + K FCAG DLK
Sbjct: 18 RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGK-AFCAGHDLK- 75
Query: 105 RLTLNEDQIRSFVSTL-----RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
+ ++ L R M + ++P PV+A + G A G ++ +CD+ VAA
Sbjct: 76 EMRAARG--LAYFRALFARCSRVMQ-AIVALPQPVIARVHGIATAAGCQLVASCDLAVAA 132
Query: 160 SNVRMG 165
R
Sbjct: 133 DTARFA 138
>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA
hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase.
Length = 275
Score = 79.9 bits (197), Expect = 4e-17
Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 13/162 (8%)
Query: 38 IYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFC 97
I SP + L +NRP RNAL+ E A+ ++ + V ++L S D FC
Sbjct: 9 IIQKSPNSS-VFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIIL-SGAGDHFC 66
Query: 98 AGADLKHRLTLNED-----------QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGG 146
+G DLK +++E ++R + L+ +E PV+A + G+ GGG
Sbjct: 67 SGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGG 126
Query: 147 LEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
+++ ACDIR + + + E LAI G QRLP IVG
Sbjct: 127 VDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVG 168
>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.
Length = 273
Score = 79.2 bits (196), Expect = 8e-17
Identities = 51/170 (30%), Positives = 85/170 (50%), Gaps = 10/170 (5%)
Query: 23 YSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEE 82
Y+ ++ ++ I+Y ++ GI ++ +NRP+ RNA V+E++ A R D+
Sbjct: 1 YAPVEWQDCKEYEDILYKSAD---GIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDN 57
Query: 83 VRCVLLRSLVKDVFCAGADLKHRLT---LNEDQI-RSFVSTLRYMTCQLESIPVPVLAVL 138
+ ++L FC+G D K R +++D + R V L+ + + P PV+A++
Sbjct: 58 IGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQR---LIRTCPKPVIAMV 114
Query: 139 DGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
G A GGG + L CD+ +AA N G K+ G G L RIVG
Sbjct: 115 AGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVG 164
>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 78.6 bits (194), Expect = 1e-16
Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G+ + +NRP NA + E+ A++ D VR ++L + FCAGAD+
Sbjct: 15 GVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRG-FCAGADMGELQ 73
Query: 107 TLNEDQIRSFVSTLRYMTCQ----------LESIPVPVLAVLDGSAYGGGLEMALACDIR 156
T++ R ++ + L ++ PV+A ++G+ G GL AL CD+R
Sbjct: 74 TIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVR 133
Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL 199
AA + + +I G + LPR+VG AL DLL
Sbjct: 134 FAADGAKFTTAFARRGLIAEHGISWILPRLVG-HANAL--DLL 173
>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase.
Length = 327
Score = 79.1 bits (195), Expect = 2e-16
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 8/172 (4%)
Query: 21 PNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGD 80
+ G++ T IIY + GI ++ +NRP+ RNA V+E+ A R D
Sbjct: 51 VVWRKVPDGSGKEFTDIIYEKAVGE-GIAKITINRPERRNAFRPRTVKELQRAFNDARDD 109
Query: 81 EEVRCVLLRSLVKDVFCAGADL----KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLA 136
V ++L FC+G D K +D R V L+ Q+ +P PV+A
Sbjct: 110 SSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQ---IQIRRLPKPVIA 166
Query: 137 VLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
++ G A GGG + + CD+ +AA N G K+ G+ + R+VG
Sbjct: 167 MVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVG 218
>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional.
Length = 269
Score = 76.3 bits (188), Expect = 7e-16
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 6/152 (3%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH-- 104
G+ + N P NA++ + E + A+ A D+ +R V+L + F +GAD+
Sbjct: 20 GLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFE 79
Query: 105 RLTLNEDQIRSF--VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ + + ++ L P +A + G GGG+ +ALACDIR+AA +
Sbjct: 80 ESRSDAEAVAAYEQAVEAAQAA--LADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDS 137
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAAL 194
R G+ +L + G G + L +VG A
Sbjct: 138 RFGIPAARLGLGYGYDGVKNLVDLVGPSAAKD 169
>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 75.8 bits (187), Expect = 9e-16
Identities = 41/147 (27%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + +NRP+A NAL+ +++E+L A++ + + V+LR + F AG D+K L
Sbjct: 15 RVATIMLNRPEALNALDEPMLKELLQALKEVA-ESSAHIVVLRGNGR-GFSAGGDIKMML 72
Query: 107 TLN-EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
+ N E + ++T+ + L ++P ++ + G A G GL +AL D +A + ++
Sbjct: 73 SSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLA 132
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLA 192
+ + +IP GG L + VG A
Sbjct: 133 MNFIGIGLIPDGGGHFFLQKRVGENKA 159
>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated.
Length = 265
Score = 75.6 bits (186), Expect = 1e-15
Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL---K 103
G L ++R NA NA ++ E++ A++ ++ D +R +LLR + F AGADL +
Sbjct: 15 GFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRH-FSAGADLAWMQ 73
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
L+ + L + L + +P LAV+ G+A+GG L + CD+ + A + +
Sbjct: 74 QSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQ 133
Query: 164 MGLVETKLAIIP 175
L E ++ + P
Sbjct: 134 FCLSEVRIGLAP 145
>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 74.4 bits (183), Expect = 3e-15
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 12/163 (7%)
Query: 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
IIY + + L +NRP+ N N + +EIL A+ D VR +L+ + K VF
Sbjct: 4 IIYEVEDD---LATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGK-VF 59
Query: 97 CAGADLKH-RLTLNEDQIRSFV---STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALA 152
G DL + ++ED ++S V + ++ ++ +P PV+ +DG+ G MA+A
Sbjct: 60 SVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVA 119
Query: 153 CDIRVAASNVRM--GLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
D +A++ + V LA P AGG L R +G+ A
Sbjct: 120 ADFCIASTKTKFIQAFVGVGLA--PDAGGLFLLTRAIGLNRAT 160
>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 73.8 bits (182), Expect = 5e-15
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 17/154 (11%)
Query: 44 ERPGIVELC-MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
ER G V L ++RP RNA ++ +++++ A+ D+E+R +L + + F AG DL
Sbjct: 4 ERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFA-HGEHFTAGLDL 62
Query: 103 --------KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD 154
E I + + R ++ P++ + G G+E+ LA D
Sbjct: 63 ADVAPKLAAGGFPFPEGGIDPWGTVGRRLS-------KPLVVAVQGYCLTLGIELMLAAD 115
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
I VAA N R +E + I+P G T R P+ G
Sbjct: 116 IVVAADNTRFAQLEVQRGILPFGGATLRFPQAAG 149
>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional.
Length = 342
Score = 74.9 bits (185), Expect = 5e-15
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 6/143 (4%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH-- 104
G++ L NRP+A NAL+ ++ I A++A D+ V V++ + FCAG D++
Sbjct: 14 GVITL--NRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALY 71
Query: 105 --RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ F + + P P +A++DG GGG+ ++ R+
Sbjct: 72 EAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERT 131
Query: 163 RMGLVETKLAIIPGAGGTQRLPR 185
+M + ET + P GGT L R
Sbjct: 132 KMAMPETGIGFFPDVGGTYFLSR 154
>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 73.0 bits (180), Expect = 7e-15
Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 35/152 (23%)
Query: 53 MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK-------HR 105
+NRP+ RNA++ + A A D+ +L FCAGADLK +R
Sbjct: 18 LNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWG-AGGTFCAGADLKAVGTGRGNR 76
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
L + D M + PV+A + G A GGLE+AL CD+RVA + G
Sbjct: 77 LHPSGDGP---------MGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFG 127
Query: 166 ---------LVETKLAIIPGAGGTQRLPRIVG 188
L++ GGT RLPR++G
Sbjct: 128 VFCRRWGVPLID---------GGTVRLPRLIG 150
>gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated.
Length = 287
Score = 71.9 bits (177), Expect = 3e-14
Identities = 50/177 (28%), Positives = 73/177 (41%), Gaps = 18/177 (10%)
Query: 30 EGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIR-----GDEEVR 84
E +L+Q+ + ER ++ + M R Q R N L+++I+ AIR V
Sbjct: 10 EAGELSQLRVYYEEER-NVMWMYM-RAQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVD 67
Query: 85 CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESI---------PVPVL 135
+L S V VF G DL L R + L Y ++ + +
Sbjct: 68 FWVLASDVPGVFNLGGDLALFAELIRAGDRD--ALLAYARACVDGVHAFHRGFGAGAISI 125
Query: 136 AVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
A++ G A GGG E AL+ +A +MG E + PG G L R VG LA
Sbjct: 126 ALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLA 182
>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase;
Validated.
Length = 275
Score = 71.2 bits (175), Expect = 4e-14
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 6/153 (3%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI + +NRP+ RNA++ TL E++ ++A+ D++ ++L D + AG DLK
Sbjct: 17 GIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTG-AGDAWSAGMDLKEYF 75
Query: 107 TLNEDQIRSFVSTLRYMTCQ----LESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ Q +R L P +A+++G +GGG +ACD+ +AA
Sbjct: 76 RETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEA 135
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAALY 195
+ GL E I PG G ++ + VG ALY
Sbjct: 136 QFGLSEINWGIPPGGGVSKAMADTVG-HRDALY 167
>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 70.1 bits (172), Expect = 1e-13
Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
Query: 53 MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNED- 111
++ P NAL+ L +E++ + I +VR V+L K VFCAGADLK R + +
Sbjct: 19 LDNPPV-NALSRELRDELIAVFDEISERPDVRVVVLTGAGK-VFCAGADLKGRPDVIKGP 76
Query: 112 -QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK 170
+R+ R + PV+A ++G A G GL + +CDI VA+ N GL E
Sbjct: 77 GDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEID 136
Query: 171 LAIIPGAGGTQRLPRIVG 188
+ + AGG + R+ G
Sbjct: 137 VGL---AGGGKHAMRLFG 151
>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional.
Length = 276
Score = 70.2 bits (172), Expect = 1e-13
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 18/155 (11%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
RP I + +NRP+ N++ ++ + A+ + D VR V+L + F +GAD K
Sbjct: 17 RPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRG-FSSGADHKS 75
Query: 105 RLTL-NEDQIRSFVSTLRYM------TCQLESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
+ + + + LR M L + PV+A ++G A GGGL +ALA DIRV
Sbjct: 76 AGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRV 135
Query: 158 AASN-------VRMGLVETKLA---IIPGAGGTQR 182
A+S+ + GL ++L ++P A G+ R
Sbjct: 136 ASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSR 170
>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional.
Length = 288
Score = 67.3 bits (165), Expect = 1e-12
Identities = 45/155 (29%), Positives = 64/155 (41%), Gaps = 32/155 (20%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK- 103
I + +NRP+ARNA N ++ E+ A D+ VR ++L K F AG DL
Sbjct: 11 AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKH-FSAGHDLGS 69
Query: 104 ------------HRLTLNEDQIRSFVSTLRY---------MTCQLESIPVPVLAVLDGSA 142
TL D RY M + +P P +A + G+
Sbjct: 70 GTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGAC 129
Query: 143 YGGGLEMALACDIRVAASN-------VRMGL--VE 168
GGL +A CD+ VA+ + VRMG+ VE
Sbjct: 130 IAGGLMLAWVCDLIVASDDAFFSDPVVRMGIPGVE 164
>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase. Members
of this protein family are 2-ketocyclohexanecarboxyl-CoA
hydrolase, a ring-opening enzyme that acts in catabolism
of molecules such as benzoyl-CoA and cyclohexane
carboxylate. It converts -ketocyclohexanecarboxyl-CoA to
pimelyl-CoA. It is not sensitive to oxygen.
Length = 256
Score = 62.7 bits (152), Expect = 3e-11
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 1/144 (0%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R GI + +NRP NA +E++ A++ D ++ ++L FC G D +
Sbjct: 9 RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGD-QS 67
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
D + + + + +P PV+A + G A GGG + CD+ +A+ +
Sbjct: 68 THDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQF 127
Query: 165 GLVETKLAIIPGAGGTQRLPRIVG 188
G V K+ + GT L R+VG
Sbjct: 128 GQVGPKVGSVDPGYGTALLARVVG 151
>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional.
Length = 248
Score = 59.8 bits (145), Expect = 2e-10
Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
R G + M+RP NALN + E ++ ++ I D ++R V++ + FC GADL
Sbjct: 6 SREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGR-AFCVGADLS 64
Query: 104 H-RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
D +F +R ++ ++ ++G G + +AL+ D + A+ +V
Sbjct: 65 EFAPDFAIDLRETFYPIIR----EIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDV 120
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVG 188
+ +L + G L ++ G
Sbjct: 121 KFVTAFQRLGLASDTGVAYFLLKLTG 146
>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional.
Length = 302
Score = 60.4 bits (147), Expect = 2e-10
Identities = 45/192 (23%), Positives = 71/192 (36%), Gaps = 43/192 (22%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK- 103
I + +NRP+ NA+ A E+ AVE D V +L+ K FCAG DL
Sbjct: 17 TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKG-FCAGYDLSA 75
Query: 104 ------------------HRLTLNEDQIRSFVSTLRYMTCQLES------IPVPVLAVLD 139
+ D + + M+ + P +A +
Sbjct: 76 YAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVH 135
Query: 140 GSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAG------GTQRLPRIVGIPLAA 193
G GG ++AL CD +AA + ++G T++ +P G G QR R+
Sbjct: 136 GYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAYRLGPQRAKRL------- 188
Query: 194 LYEDLLNNDCMS 205
L DC++
Sbjct: 189 ----LFTGDCIT 196
>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated.
Length = 302
Score = 60.0 bits (146), Expect = 3e-10
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 22/148 (14%)
Query: 30 EGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLR 89
G T I YH + + G V + +RP+ RNA V+E+ A++ R +V CVLL
Sbjct: 18 PGFDFTDITYHRAVD-QGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLT 76
Query: 90 S---LVKD---VFCAGADLKHR-----------LTLNEDQIRSFVSTLRYMTCQ--LESI 130
KD FC+G D + R D R+ L + Q + +
Sbjct: 77 GNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARA--GRLHILEVQRLIRFM 134
Query: 131 PVPVLAVLDGSAYGGGLEMALACDIRVA 158
P V+AV+ G A GGG + + CD+ +A
Sbjct: 135 PKVVIAVVPGWAAGGGHSLHVVCDLTLA 162
>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional.
Length = 268
Score = 59.3 bits (144), Expect = 5e-10
Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 21/143 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
PG++E+ +N P A NA +A + E+ + D +VR VL+R K F AG DL
Sbjct: 19 PPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGK-AFSAGGDLA- 76
Query: 105 RLTLNEDQIRSFVSTLRYMT-----------CQLESIPVPVLAVLDGSAYGGGLEMALAC 153
L E+ F R C P+++ + G A G GL AL
Sbjct: 77 ---LVEEMADDFEVRARVWREARDLVYNVINC-----DKPIVSAIHGPAVGAGLVAALLA 128
Query: 154 DIRVAASNVRMGLVETKLAIIPG 176
DI +AA + R+ T+L + G
Sbjct: 129 DISIAAKDARIIDGHTRLGVAAG 151
>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 58.2 bits (141), Expect = 9e-10
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 22/156 (14%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIR-GDEEVRCVLLRSLVKDVFCAGADLKHR 105
G+ L ++ P+ NA++ ++ + A++AI G EVRC++L + FC GA+L+ R
Sbjct: 13 GVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRG-FCTGANLQGR 71
Query: 106 LTLNE------DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
+ D + + +L ++P P++ ++G A G G+ AL D+ + A
Sbjct: 72 GSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCA 131
Query: 160 SNV-------RMGLVETKLAIIPGAGGTQRLPRIVG 188
+ R+GLV P G T LPR+VG
Sbjct: 132 RSAYFLQAFRRIGLV-------PDGGSTWLLPRLVG 160
>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase;
Validated.
Length = 255
Score = 57.8 bits (140), Expect = 1e-09
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 5/132 (3%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
+ L ++RP+A+N +N L+ E + ++ R + V+L L +VFC GAD
Sbjct: 12 GDVCFLQLHRPEAQNTINDRLIAECMDVLD--RCEHAATIVVLEGL-PEVFCFGADFSAI 68
Query: 106 LTLNED-QIRSFVSTLRY-MTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ + + Y + +L + P +A + G GG+ A DI +A
Sbjct: 69 AEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAP 128
Query: 164 MGLVETKLAIIP 175
L E +IP
Sbjct: 129 FSLSELLFGLIP 140
>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 56.5 bits (137), Expect = 3e-09
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 12/147 (8%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
PGI E+ ++ P NAL + + A+ A D + R V+LR+ + F AG D+K
Sbjct: 10 PGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRG-FNAGVDIKE- 66
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESI---PVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ + R ++ VPV+A + G GGG+ + D+ VA+ +
Sbjct: 67 -LQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDA 125
Query: 163 RMGLVETKLAIIPGA-GGTQRLPRIVG 188
GL E + GA G L R+V
Sbjct: 126 TFGLPE----VDRGALGAATHLQRLVP 148
>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase.
Length = 381
Score = 54.7 bits (131), Expect = 3e-08
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 5/149 (3%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
E+ + L +NRP+ NAL+ ++ +L A D V+ V+L+ + FCAG D+
Sbjct: 15 EKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGR-AFCAGGDVA 73
Query: 104 HRL-TLNEDQIR---SFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
+ + + R +F S + + + +++L+G GGG +++ R+A
Sbjct: 74 AVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIAT 133
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
N + ET L + P G + L R+ G
Sbjct: 134 ENTVFAMPETALGLFPDVGASYFLSRLPG 162
>gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase. In the
presence of O2, the benzoyl-CoA oxygenase/reductase
BoxBA BoxAB converts benzoyl-CoA to
2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this
family, BoxC, homologous to enoyl-CoA
hydratases/isomerases, hydrolyze this compound to
3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Length = 546
Score = 54.8 bits (132), Expect = 3e-08
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 32/135 (23%)
Query: 69 EILTAVEAIRGDE-EVRCVLLRSLVKDVFCAGADLK--------HRL--------TLNED 111
E+ AV+ IR + EVR V++ S VFC+GA++ ++ T N
Sbjct: 52 ELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGI 111
Query: 112 QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD--IRVAASNVRMGLVET 169
+ S S L++ LA ++G+ GGG E+ALACD + V + + L E
Sbjct: 112 EDSSRHSGLKF------------LAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEV 159
Query: 170 K-LAIIPGAGGTQRL 183
L ++PG GG R+
Sbjct: 160 PLLGVLPGTGGLTRV 174
>gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional.
Length = 550
Score = 53.8 bits (130), Expect = 5e-08
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 36/137 (26%)
Query: 69 EILTAVEAIRGDE-EVRCVLLRSLVKDVFCAGADLK------HRLTLN------------ 109
E+ A++ IR + EVR V++ S VFC+GA++ H +N
Sbjct: 56 ELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGI 115
Query: 110 EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD--IRVAASNVRMGLV 167
ED R S L++ +A ++G+ GGG E+ALACD + V + + L
Sbjct: 116 EDSSRH--SGLKF------------IAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLP 161
Query: 168 ETK-LAIIPGAGGTQRL 183
E L ++PG GG R+
Sbjct: 162 EVPLLGVLPGTGGLTRV 178
>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase;
Provisional.
Length = 278
Score = 52.6 bits (126), Expect = 7e-08
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRS-LVKDVFCAGADLK--HRLTLNEDQIRSF 116
N++ + + A+ A+ D VR V+ S L +DVF AG D+ + + + F
Sbjct: 33 NSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEF 92
Query: 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAI 173
T +L + + + G+ GG ++L CD R+ + MGL E L I
Sbjct: 93 WLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGI 149
>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA
hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA
hydratase, also called dienoyl-CoA hydratase, acts on
the product of benzoyl-CoA reductase (EC 1.3.99.15).
Benzoyl-CoA is a common intermediate in the degradation
of many aromatic compounds, and this enzyme is part of
an anaerobic pathway for dearomatization and
degradation.
Length = 251
Score = 51.5 bits (123), Expect = 2e-07
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 10/157 (6%)
Query: 44 ERPG-IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADL 102
ER G ++ L + RP+A N ++A ++ + A+ D +R VLL + F GA +
Sbjct: 6 ERDGKLLRLRLARPKA-NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPH-FSFGASV 63
Query: 103 KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ DQ + +++L + + PVP+L + G GGGLE+A A ++ AA +
Sbjct: 64 AEHMP---DQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDA 120
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLL 199
++G E L + A R + A EDLL
Sbjct: 121 KLGQPEIVLGVFAPAASCLLPER---MGRVA-AEDLL 153
>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional.
Length = 277
Score = 51.1 bits (123), Expect = 3e-07
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 22/155 (14%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR- 105
G+ + +NRP+ +N L E+ + ++V+ V+L FC+G D+ H
Sbjct: 26 GVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTG-AGGNFCSGGDV-HEI 83
Query: 106 ----LTLNEDQIRSFVSTLRYMTCQL----ESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
++ ++ +F MT L + P P++A +DG G G +A+A D+R+
Sbjct: 84 IGPLTKMDMPELLAFTR----MTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRL 139
Query: 158 AASNVRMGLVETK--LAIIPGA--GGTQRLPRIVG 188
+ + + T+ LA GA G LPRI+G
Sbjct: 140 GTPSAKTAFLFTRVGLA---GADMGACALLPRIIG 171
>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 407
Score = 51.5 bits (123), Expect = 3e-07
Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 18/175 (10%)
Query: 21 PNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGD 80
PNY+ + + + L + + R I +NRP + NAL +V + E+ +
Sbjct: 32 PNYAANDDLQDQVLVE---GRAKSRAAI----LNRPSSLNALTIPMVARLKRLYESWEEN 84
Query: 81 EEVRCVLLRSLVKDVFCAGADLKHRLTLNE-------DQIRSFVSTLRYMTCQLESIPVP 133
++ VL++ + FC+GAD+ ++L ++ + F L + P
Sbjct: 85 PDIGFVLMKGSGR-AFCSGADV---VSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKP 140
Query: 134 VLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
+A++DG G G +++ RV E ++ P AG + L R+ G
Sbjct: 141 NVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPG 195
>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 401
Score = 50.8 bits (121), Expect = 4e-07
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 5/140 (3%)
Query: 53 MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGAD---LKH-RLTL 108
+NRP A NAL + + + D + V+++ + FCAG D L H R
Sbjct: 52 LNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGR-AFCAGGDIVSLYHLRKRG 110
Query: 109 NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVE 168
+ D IR F S+L L + P +A+L+G GGG +++ RVA E
Sbjct: 111 SPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPE 170
Query: 169 TKLAIIPGAGGTQRLPRIVG 188
T + P AG + L + G
Sbjct: 171 TIIGFHPDAGASFNLSHLPG 190
>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional.
Length = 251
Score = 46.7 bits (111), Expect = 6e-06
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
PG+ + NRP+ +NA+ + + A++A D+ +R + + F AG D++
Sbjct: 14 PGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLG-TEGCFSAGNDMQDF 72
Query: 106 LTLN------EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
L +I F+ L P+++ +DG A G G + L CD+ A+
Sbjct: 73 LAAAMGGTSFGSEILDFLIA-------LAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFAS 125
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
LA++P AG + PR++G
Sbjct: 126 PRSLFRTPFVDLALVPEAGSSLLAPRLMG 154
>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA
hydrolase. Members of this protein family are
6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a
ring-hydrolyzing enzyme in the anaerobic metabolism of
aromatic enzymes by way of benzoyl-CoA, as seen in
Thauera aromatica, Geobacter metallireducens, and
Azoarcus sp. Note that Rhodopseudomonas palustris uses a
different pathway to perform a similar degradation of
benzoyl-CoA to 3-hydroxpimelyl-CoA.
Length = 360
Score = 46.8 bits (111), Expect = 9e-06
Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 5/148 (3%)
Query: 46 PGI--VELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
PG+ + ++ P+ N+ +V+ I+ A D +V V+ ++ FC G + K
Sbjct: 34 PGLYNAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTK 93
Query: 104 HRLTL---NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
N + R ++ M + PV+ ++G GGG E+ +A D +A
Sbjct: 94 EYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQD 153
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVG 188
G K P G T LP ++G
Sbjct: 154 LANFGQAGPKHGSAPIGGATDFLPLMIG 181
>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 379
Score = 44.8 bits (106), Expect = 4e-05
Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Query: 53 MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--HRLTLNE 110
+NRP+ N ++ ++V + +E D+ V ++++ + F AG DLK + ++
Sbjct: 26 LNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGR-AFSAGGDLKMFYDGRESD 84
Query: 111 DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETK 170
D V + ++ + + +A++ G GGG + + RV E
Sbjct: 85 DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEAS 144
Query: 171 LAIIPGAGGTQRLPRIVG 188
+ G + L R+ G
Sbjct: 145 VGFHTDCGFSYILSRLPG 162
>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional.
Length = 298
Score = 42.6 bits (100), Expect = 1e-04
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 20/135 (14%)
Query: 48 IVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL- 106
+ + +NRP+ N + + +EI A+ D++++ ++LR + F G D
Sbjct: 15 VATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGR-AFSGGYDFGGGFQ 73
Query: 107 ----TLNED------------QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMA 150
+ D R T ++M + PV+A + G GG + A
Sbjct: 74 HWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMA--IWRASKPVIAQVHGWCVGGASDYA 131
Query: 151 LACDIRVAASNVRMG 165
L DI +A+ + +G
Sbjct: 132 LCADIVIASDDAVIG 146
>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein.
Length = 239
Score = 38.9 bits (91), Expect = 0.002
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 62 LNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--HRLTLNEDQIRSFVST 119
LN TL++ I +A+ ++ VL+ + F G DL ++ V+
Sbjct: 23 LNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAK 82
Query: 120 LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACD 154
LR + L S+P+P +A + G A G +AL+ D
Sbjct: 83 LRPLVADLISLPMPTIAAVTGHASAAGFILALSHD 117
>gnl|CDD|132923 cd00394, Clp_protease_like, Caseinolytic protease (ClpP) is an
ATP-dependent protease. Clp protease (caseinolytic
protease; ClpP; endopeptidase Clp; Peptidase S14;
ATP-dependent protease, ClpAP)-like enzymes are highly
conserved serine proteases and belong to the
ClpP/Crotonase superfamily. Included in this family are
Clp proteases that are involved in a number of cellular
processes such as degradation of misfolded proteins,
regulation of short-lived proteins and housekeeping
removal of dysfunctional proteins. They are also
implicated in the control of cell growth, targeting
DNA-binding protein from starved cells. The functional
Clp protease is comprised of two components: a
proteolytic component and one of several regulatory
ATPase components, both of which are required for
effective levels of protease activity in the presence of
ATP. Active site consists of the triad Ser, His and Asp,
preferring hydrophobic or non-polar residues at P1 or
P1' positions. The protease exists as a tetradecamer
made up of two heptameric rings stacked back-to-back
such that the catalytic triad of each subunit is located
at the interface between three monomers, thus making
oligomerization essential for function. Another family
included in this class of enzymes is the signal peptide
peptidase A (SppA; S49) which is involved in the
cleavage of signal peptides after their removal from the
precursor proteins by signal peptidases. Mutagenesis
studies suggest that the catalytic center of SppA
comprises a Ser-Lys dyad and not the usual Ser-His-Asp
catalytic triad found in the majority of serine
proteases. In addition to the carboxyl-terminal protease
domain that is conserved in all the S49 family members,
the E. coli SppA contains an amino-terminal domain.
Others, including sohB peptidase, protein C, protein
1510-N and archaeal signal peptide peptidase, do not
contain the amino-terminal domain. The third family
included in this hierarchy is nodulation formation
efficiency D (NfeD) which is a membrane-bound Clp-class
protease and only found in bacteria and archaea.
Majority of the NfeD genomes have been shown to possess
operons containing a homologous NfeD/stomatin gene pair,
causing NfeD to be previously named stomatin operon
partner protein (STOPP). NfeD homologs can be divided
into two groups: long and short forms. Long-form
homologs have a putative ClpP-class serine protease
domain while the short form homologs do not. Downstream
from the ClpP-class domain is the so-called NfeD or
DUF107 domain. N-terminal region of the NfeD homolog
PH1510 from Pyrococcus horikoshii has been shown to
possess serine protease activity having a Ser-Lys
catalytic dyad.
Length = 161
Score = 30.8 bits (70), Expect = 0.65
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPG 176
V + L++ PV+A + G A G +A A + V A R+G I G
Sbjct: 43 VDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAANKIVMAPGTRVGSH----GPIGG 98
Query: 177 AGGTQRLPRIVGIPLAALY 195
GG LY
Sbjct: 99 YGGNGNPTAQEADQRIILY 117
>gnl|CDD|148787 pfam07373, CAMP_factor, CAMP factor (Cfa). This family consists of
several bacterial CAMP factor (Cfa) proteins which seem
to be specific to Streptococcus species. The CAMP
reaction is a synergistic lysis of erythrocytes by the
interaction of an extracellular protein (CAMP factor)
produced by some streptococcal species with the
Staphylococcus aureus sphingomyelinase C (beta-toxin).
Length = 228
Score = 30.9 bits (70), Expect = 0.82
Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 27/131 (20%)
Query: 54 NRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQI 113
+ Q + L+ ++ L + A R L+ + K V G+D EDQI
Sbjct: 4 STSQPNHNLSVNDAQQELQKLNA-------RIAQLQDIQKSV--KGSDY-------EDQI 47
Query: 114 RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMAL-ACDI----------RVAASNV 162
+ + LE+IP + D S+ +E+ D +V+ ++V
Sbjct: 48 NDLLKAAFDLKTALETIPEGGVTFYDLSSIPARVELLTDVIDTIHTATHTLQNKVSQAHV 107
Query: 163 RMGLVETKLAI 173
+GL TK I
Sbjct: 108 ELGLEITKAVI 118
>gnl|CDD|224956 COG2045, COG2045, Phosphosulfolactate phosphohydrolase and related
enzymes [Coenzyme metabolism / General function
prediction only].
Length = 230
Score = 30.4 bits (69), Expect = 1.1
Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 20/127 (15%)
Query: 16 KVTKWPNYSTSVSKEGRKLTQIIYHNSPE--RPGIVE---LCMNRPQARNALNATLVEEI 70
++P + + G K+ NSP +VE L + AL E I
Sbjct: 54 VKRRYPGALLAGERGGAKIPGFDLGNSPLEITGELVEGKTLVLTTTNGTRALLRAKSEHI 113
Query: 71 LTA--------VEAIRGDEEVRCVL-----LRSLVKDVFCAGADLKHRLTLNEDQIRSFV 117
L EA++ E+V V+ R ++D CAGA + H L +
Sbjct: 114 LIGSLVNASAVAEALKELEDV-LVVPAGRNGRFALEDFLCAGA-IAHYLEGENGDGVAAA 171
Query: 118 STLRYMT 124
+ T
Sbjct: 172 AVYMERT 178
>gnl|CDD|239932 cd04486, YhcR_OBF_like, YhcR_OBF_like: A subfamily of OB-fold
domains similar to the OB folds of Bacillus subtilis
YhcR. YhcR is a sugar-nonspecific nuclease, which is
active in the presence of Ca2+ and Mn2+. It cleaves RNA
endonucleolytically, producing 3'-monophosphate
nucleosides. YhcR appears to be the major Ca2+ activated
nuclease of B. subtilis. YhcR may be localized in the
cell wall.
Length = 78
Score = 28.4 bits (64), Expect = 1.2
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 261 GDRYYLGLNGIELYDEFGDLIPLTAENIFAY 291
GL G + DE GD P T+E IF Y
Sbjct: 8 AVFSGGGLGGFYIQDEDGDGDPATSEGIFVY 38
>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional.
Length = 229
Score = 29.2 bits (66), Expect = 2.7
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 15/134 (11%)
Query: 60 NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFV-- 117
NAL+ +++ + A++ D R V++ + +F G DLK +T + +
Sbjct: 24 NALSPAMIDALNAALDQAEDD---RAVVVITGQPGIFSGGFDLK-VMTSGAQAAIALLTA 79
Query: 118 -STLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA-SNVRMGLVETKLAI-I 174
STL +L S P PV+ G A G + L+ D R+ ++GL E + + +
Sbjct: 80 GSTLAR---RLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTM 136
Query: 175 PGAG---GTQRLPR 185
P A RL
Sbjct: 137 PHAAIELARDRLTP 150
>gnl|CDD|227502 COG5175, MOT2, Transcriptional repressor [Transcription].
Length = 480
Score = 29.3 bits (65), Expect = 3.2
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 268 LNGIELYDEFGDLIPL------TAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADG 321
L E + ++G + + ++ N A AGV+I + + DA C +DG ++ DG
Sbjct: 135 LKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDG--SLLDG 192
Query: 322 TH 323
Sbjct: 193 RV 194
>gnl|CDD|218857 pfam06023, DUF911, Archaeal protein of unknown function (DUF911).
This family consists of several archaeal proteins of
unknown function.
Length = 290
Score = 28.6 bits (64), Expect = 4.5
Identities = 29/121 (23%), Positives = 43/121 (35%), Gaps = 21/121 (17%)
Query: 62 LNATLVEEILTAVEAIR----GDEEVRCVLLRSLVKDVFCAGAD-----------LKHRL 106
L + E A+E ++ E L RS + D F D L R+
Sbjct: 79 LGQAIHEAFAKAIEEVKSLIYSGEPPDSSLERSFMADEFGCPEDVREYAKALWKYLASRV 138
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
+ ++RS + IPV V +DGS G L+ +RV A + L
Sbjct: 139 SAELSEVRSKFPKATEDSAAFRVIPVAVEVRVDGSPLG------LSSYLRVDAFIPILPL 192
Query: 167 V 167
V
Sbjct: 193 V 193
>gnl|CDD|216445 pfam01343, Peptidase_S49, Peptidase family S49.
Length = 149
Score = 28.0 bits (63), Expect = 4.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 133 PVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLV 167
PV+A + A GG +A A D VA +G +
Sbjct: 3 PVVASMGNYAASGGYYLASAADKIVANPTTIVGSI 37
>gnl|CDD|145995 pfam03148, Tektin, Tektin family. Tektins are cytoskeletal
proteins. They have been demonstrated in such cellular
sites as centrioles, basal bodies, and along ciliary and
flagellar doublet microtubules. Tektins form unique
protofilaments, organised as longitudinal polymers of
tektin heterodimers with axial periodicity matching
tubulin. Tektin polypeptides consist of several
alpha-helical regions that are predicted to form coiled
coils. Indeed, tektins share considerable structural
similarities with intermediate filament proteins.
Possible functional roles for tektins are: stabilisation
of tubulin protofilaments; attachment of A and B-tubules
in ciliary/flagellar microtubule doublets and C-tubules
in centrioles; binding of axonemal components.
Length = 384
Score = 28.3 bits (64), Expect = 7.3
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Query: 29 KEGR-KLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVL 87
KEG K+ Q N +RP VELC ++ Q R L++E V+ + L
Sbjct: 291 KEGPLKVAQTRLENRTQRPN-VELCRDQAQYR------LIDE----VKELED---TIAAL 336
Query: 88 LRSLVKDVFCAGADL-KHRLTLNED 111
L + + L + R L ED
Sbjct: 337 KEKL-AEAEASLKALEETRARLEED 360
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.425
Gapped
Lambda K H
0.267 0.0671 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,518,687
Number of extensions: 1817131
Number of successful extensions: 1485
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1381
Number of HSP's successfully gapped: 102
Length of query: 358
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 260
Effective length of database: 6,590,910
Effective search space: 1713636600
Effective search space used: 1713636600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.0 bits)