RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy504
(358 letters)
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding
protein,enoyl-COA hydratase, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Homo
sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Length = 272
Score = 207 bits (530), Expect = 2e-65
Identities = 81/166 (48%), Positives = 117/166 (70%), Gaps = 1/166 (0%)
Query: 28 SKEGRKLTQIIYHNSPE-RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCV 86
S E + ++ + E GIV L +NR +N+L+ L++ + AV+A++ D++VR +
Sbjct: 1 SSEMKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTI 60
Query: 87 LLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGG 146
++RS V +FCAGADLK R ++ ++ FVS +R + + ++PVP +A +DG A GGG
Sbjct: 61 IIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGG 120
Query: 147 LEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
LE+ALACDIRVAAS+ +MGLVETKLAIIPG GGTQRLPR +G+ LA
Sbjct: 121 LELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLA 166
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural
genomic for structural genomics of infectious diseases,
csgid; HET: MSE; 1.80A {Bacillus anthracis}
Length = 265
Score = 201 bits (513), Expect = 4e-63
Identities = 68/147 (46%), Positives = 98/147 (66%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
P +V++ +NR + N+L+ L+EE+ + I + R V+L + FCAGADLK R
Sbjct: 17 PHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKER 76
Query: 106 LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
+NE+Q+R VS +R +E +P PV+A ++G A GGG E++LACD R+AA + +G
Sbjct: 77 AGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLG 136
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLA 192
L ET LAIIPGAGGTQRLPR++G+ A
Sbjct: 137 LTETTLAIIPGAGGTQRLPRLIGVGRA 163
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase,
structural genomics, NPPSFA; 2.16A {Geobacillus
kaustophilus}
Length = 265
Score = 175 bits (447), Expect = 3e-53
Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
GI E+ ++ ++ N+ + +E A++ IR D +++ V++ S V F AGAD+
Sbjct: 16 EDGIAEIHLHINKS-NSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINF 74
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN-VR 163
+ + F ++ P +A L+G GGGLEMALACD+R +
Sbjct: 75 LRSADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGK 134
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+GL E L ++ G GGTQRL R++G A
Sbjct: 135 IGLPEVSLGVLAGTGGTQRLARLIGYSRA 163
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 170 bits (434), Expect = 2e-51
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 4/150 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + ++ P+ +N L+A L +L A+ A + + ++L+S + F +G L+ L
Sbjct: 13 DALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLL 72
Query: 107 TLNEDQ----IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
DQ +R + L + ++ + P +A+++G AYGGG M LACD R+A
Sbjct: 73 ICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRA 132
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+ K+ I P G + LPRI+G
Sbjct: 133 KFLENFHKMGISPDLGASYFLPRIIGYEQT 162
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Length = 277
Score = 169 bits (430), Expect = 1e-50
Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 2/148 (1%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
G+ L ++RP NA+ + EI+ A + + +++ V+L + +F AG D+
Sbjct: 31 DQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHE-IFSAGDDMPE 88
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
TLN + + + +IP P +A + G A G GL +ALA D RV+ NV+
Sbjct: 89 LRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKF 148
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
G E +IPG GG RL R+VG A
Sbjct: 149 GATEILAGLIPGGGGMGRLTRVVGSSRA 176
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics,
protein structure INI NEW YORK structural genomix
research consortium; 2.00A {Rhodopseudomonas palustris}
Length = 275
Score = 168 bits (429), Expect = 2e-50
Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 3/148 (2%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
++ + +NRP+ RNALN L+ + + I +++R V++ + D F AG DL
Sbjct: 23 VGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHG-IGDHFSAGLDLSE 79
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ + T + +++ VPV+A L G+ GGGLE+A A IRVA ++
Sbjct: 80 LRERDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYY 139
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
L E I G GG+ RLPR++G+
Sbjct: 140 ALPEGSRGIFVGGGGSVRLPRLIGVARM 167
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET:
CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Length = 260
Score = 167 bits (426), Expect = 3e-50
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
G+ + P N+L+ + E++ ++E + D+ R V+L S VF AG DL
Sbjct: 11 AGAGVAVMKFKNPPV-NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLT 69
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ + ++ + +L + +++ ++G+ GG +AL CD R+ A N R
Sbjct: 70 EMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPR 129
Query: 164 --MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+GL ET+L II L +G A
Sbjct: 130 YCIGLNETQLGIIAPFWLKDTLENTIGHRAA 160
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Length = 258
Score = 166 bits (424), Expect = 6e-50
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 3/148 (2%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ + + RP NAL+ +V EI+ AVEA +E+VR ++L + F AGAD++
Sbjct: 12 EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGR-AFAAGADIQE 70
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ ++ + +L + P++A ++G A GGG E+AL+CD+ VA+S
Sbjct: 71 MAKDDPIRLEWL-NQFADWD-RLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEF 128
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
G E L ++PGAGGTQRL +++G A
Sbjct: 129 GFPEVNLGVMPGAGGTQRLTKLIGPKRA 156
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A
2q2x_A
Length = 243
Score = 165 bits (420), Expect = 2e-49
Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 6/149 (4%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
G+V++ M +RN + ++VE + + +++ + V+L F +GA +
Sbjct: 10 GNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGN-YFSSGASKEF 68
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ ++ + +P++A + G ++GGGL + L D V +
Sbjct: 69 LIRKTRGEVEVL----DLSG-LILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVY 123
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
K P + L +G LA
Sbjct: 124 ATNFMKYGFTPVGATSLILREKLGSELAQ 152
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC;
2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A*
1dub_A* 1ey3_A* 2hw5_A*
Length = 260
Score = 165 bits (420), Expect = 3e-49
Identities = 59/156 (37%), Positives = 78/156 (50%), Gaps = 3/156 (1%)
Query: 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
II + + + +NRP+A NAL L+EE+ A+E D V ++L K F
Sbjct: 6 IITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEK-AF 64
Query: 97 CAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
AGAD+K S L + + I PV+A ++G A GGG E+A+ CDI
Sbjct: 65 AAGADIKEMQNRTFQDCYSG-KFLSHWD-HITRIKKPVIAAVNGYALGGGCELAMMCDII 122
Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
A + G E L IPGAGGTQRL R VG LA
Sbjct: 123 YAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLA 158
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli}
SCOP: c.14.1.3 PDB: 1ef9_A*
Length = 261
Score = 163 bits (416), Expect = 9e-49
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKD-VFCAGADLK 103
+ + N + NAL+ +++++ A+ + E +RC++LR+ VF AG D+
Sbjct: 11 INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIH 69
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ D S+ LR +T ++ P P++++++GS +GG EM ++ D+ +AAS
Sbjct: 70 ELPSGGRDP-LSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTST 128
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+ L + G L R G +
Sbjct: 129 FSMTPVNLGVPYNLVGIHNLTRDAGFHIV 157
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics
center for infectious DI enoyl COA, actinobacteria,
lyase; 1.50A {Mycobacterium smegmatis}
Length = 263
Score = 163 bits (415), Expect = 2e-48
Identities = 56/149 (37%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
G+ + ++RP A NALN TL E+L A D E+ +++ + F AGAD+
Sbjct: 16 PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSER-AFAAGADIA 74
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+TL Q R + L L + P++A + G A GGG E+A+ CD+ +AA R
Sbjct: 75 EMVTLTPHQARER-NLLSGWD-SLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTAR 132
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
G E L I+PG GGTQRL R VG A
Sbjct: 133 FGQPEITLGILPGLGGTQRLTRAVGKAKA 161
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A
2iex_A
Length = 289
Score = 163 bits (416), Expect = 2e-48
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
I Y S + GI ++ +NRPQ RNA V+E++ A+ R D+ + ++L F
Sbjct: 29 IRYEKSTD--GIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAF 86
Query: 97 CAGADLKHRLTLNEDQIRSFVSTLRYMTCQ--LESIPVPVLAVLDGSAYGGGLEMALACD 154
C+G D K R + S V L + Q + + P PV+A++ G + GGG + + CD
Sbjct: 87 CSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCD 146
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
+ +AA N G K+ G G + RIVG
Sbjct: 147 LTIAADNAIFGQTGPKVGSFDGGWGASYMARIVG 180
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 163 bits (416), Expect = 2e-48
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 7/154 (4%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
G+ + ++ P N + AT++ E+ T + + D VR ++ S + F A D++
Sbjct: 16 EHGVARIILDNP-PVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRI 74
Query: 105 RLTLNEDQIRSFVSTLRYMTCQ-----LESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
++ Q + + Q + P + L G A GGG E A D+ AA
Sbjct: 75 GEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAA 134
Query: 160 S-NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+ +G +E + IIPG GGTQ L VG A
Sbjct: 135 AETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRA 168
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2,
protein structure initiative, EN hydratase; 1.76A
{Bordetella parapertussis}
Length = 254
Score = 162 bits (413), Expect = 2e-48
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
RP ++RP+ RNAL+A LVE ++ V+A E+V ++ + F AG D
Sbjct: 14 RPAAWTFTLSRPEKRNALSAELVEALIDGVDAA-HREQVPLLVFAGAGR-NFSAGFDFTD 71
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
T +E + + + + ++ P LA+ G +G G+++ AC R
Sbjct: 72 YETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGF 131
Query: 165 GLVETKLAIIPGAGGTQRLPRIVG 188
+ K ++ GT+R IVG
Sbjct: 132 RMPGLKFGLVL---GTRRFRDIVG 152
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase,
crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens}
PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E*
2vsu_F* 2vsu_E* 2vsu_C*
Length = 276
Score = 163 bits (414), Expect = 3e-48
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 9/170 (5%)
Query: 28 SKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVL 87
S + + GI + +NRP+ RNA++ TL E++ +E + D ++
Sbjct: 2 STYEGRWKTVKVE---IEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLV 58
Query: 88 LRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQ-----LESIPVPVLAVLDGSA 142
L + + AG DLK + +R Q L P +A+++G
Sbjct: 59 LTGAGE-AWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWC 117
Query: 143 YGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+GGG +ACD+ + A GL E I PG ++ + VG +
Sbjct: 118 FGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQS 167
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 162 bits (412), Expect = 4e-48
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 10/148 (6%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ L +NRPQ+RNAL+A L A+ + D++V V++ VFCAG DLK
Sbjct: 16 TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADP-VFCAGLDLKE 74
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
E ++ + + PV+ ++G+A GGLE+AL CDI +A+ N +
Sbjct: 75 LGDTTELP---------DISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKF 125
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
++ ++P G + RLP+ VG+ LA
Sbjct: 126 ADTHARVGLMPTWGLSVRLPQKVGVGLA 153
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 162 bits (413), Expect = 4e-48
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 3/149 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G++ L +NRP+A+NAL L I A++ +++VR V+LR F AG D+K +
Sbjct: 14 GVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEH-DFTAGNDMKDFM 72
Query: 107 TLNEDQIRSFVSTLRYMTC--QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
++ + + P++ + G A G G+ + L D+ A +
Sbjct: 73 GFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALF 132
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
+ L + P G +Q L + G AA
Sbjct: 133 QIPFVSLGLSPEGGASQLLVKQAGYHKAA 161
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism,
lyase, structural genomics; HET: PGE; 2.30A
{Mycobacterium tuberculosis}
Length = 264
Score = 161 bits (410), Expect = 1e-47
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
++ + + RP+ RNALN+ LVEE+ A+ GD R ++L FCAGADL
Sbjct: 28 AEAVLTIELQRPERRNALNSQLVEELTQAIRKA-GDGSARAIVLTGQGT-AFCAGADLSG 85
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ L + +++ P+PV+ ++G A G GL++A+ CD+RV A +
Sbjct: 86 D-----AFAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFF 140
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+K + +RL +VG A
Sbjct: 141 QFPTSKYGLALDNWSIRRLSSLVGHGRA 168
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.85A {Thermus thermophilus} SCOP:
c.14.1.3
Length = 253
Score = 160 bits (408), Expect = 1e-47
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 5/152 (3%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
E+ + + +N P+ RN L+ + +L A++ + D VR V+L K F AGADL
Sbjct: 5 EKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGK-AFSAGADLA 63
Query: 104 HRLTLNE---DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
+ E ++ +L + ++ + P P +A ++G A GG +ALACD+ V
Sbjct: 64 FLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDE 123
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
R+G E K+ + + L R VG A
Sbjct: 124 EARLGYTEVKIGFVAA-LVSVILVRAVGEKAA 154
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FLC PG4; 1.82A {Bacillus anthracis}
Length = 261
Score = 160 bits (408), Expect = 2e-47
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
I +N A NA+++ ++ ++ ++ + D+ +R V++ + F AGAD+K
Sbjct: 13 EDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGR-FFSAGADIKE 70
Query: 105 RLTLNE-DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
++ E Q + ++E PV+A + G+A GGGLE A++C +R A + +
Sbjct: 71 FTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAK 130
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+GL E L +IPG GTQRLPR VG A
Sbjct: 131 LGLPELTLGLIPGFAGTQRLPRYVGKAKA 159
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein;
2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB:
2a81_A*
Length = 250
Score = 159 bits (406), Expect = 2e-47
Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 2/149 (1%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ + ++ P N + TL + A+ D+ VR V++ + F AG D
Sbjct: 7 SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNE 66
Query: 105 RLTLN-EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
L+ + I ++ + + + ++ P +A +DG A G G + AL D R+ AS
Sbjct: 67 VKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTAN 126
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+ E K I G L G
Sbjct: 127 FVMPELKHGIGCSVGAAI-LGFTHGFSTM 154
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.45A {Mycobacterium avium subsp}
Length = 276
Score = 160 bits (408), Expect = 2e-47
Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 11/154 (7%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
+ + +NRP + N++N L + + + D R ++ R+ F AG
Sbjct: 35 DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRA-----FSAGG 89
Query: 101 DLKH--RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVA 158
D + L+ + D + R + + +PV+A ++G A G G + DI
Sbjct: 90 DFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYI 149
Query: 159 ASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
A N + ++ ++ GG P + + LA
Sbjct: 150 AENAYLADPHVQVGLVAADGGPLTWPLHISLLLA 183
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA;
2.9A {Staphylococcus aureus}
Length = 273
Score = 160 bits (406), Expect = 4e-47
Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 6/158 (3%)
Query: 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
I Y GI ++ +NRP+ RNA V E++ A R D+ V ++L F
Sbjct: 15 IKYE---FYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAF 71
Query: 97 CAGADLKHRLTLNEDQIRSFVSTLRYMTCQ--LESIPVPVLAVLDGSAYGGGLEMALACD 154
C+G D K R L + Q + IP PV+A++ G A GGG + + CD
Sbjct: 72 CSGGDQKKRGHGGYVGEDQI-PRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCD 130
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+ +AA N G K+ G+ L RIVG A
Sbjct: 131 LTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKA 168
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 160 bits (408), Expect = 4e-47
Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 5/148 (3%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
++ N P N + +V +++ +E + R V+ S D F D+
Sbjct: 15 DGTVLSATFNAP-PMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTK 73
Query: 105 RLTLNEDQIRSFVSTLRYMTC---QLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS- 160
+ ++ + +L +P +A L G A G G E LACD+R A+
Sbjct: 74 VPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRE 133
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVG 188
N +G E + PGAG Q L R++G
Sbjct: 134 NAILGQPEVGIGAPPGAGAIQHLTRLLG 161
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP:
c.14.1.3 PDB: 2vre_A
Length = 275
Score = 160 bits (406), Expect = 4e-47
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 12/155 (7%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ ++ + +NRP+ RNA+N E++ + I D + R V++ K +F +G DL
Sbjct: 11 QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGK-MFTSGIDLMD 69
Query: 105 RLTL-----------NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALAC 153
+ +R +S + +E P PV+A + G GGG+++ AC
Sbjct: 70 MASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISAC 129
Query: 154 DIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
DIR + + E + + G QRLP+++G
Sbjct: 130 DIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIG 164
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.35A {Mycobacterium abscessus}
Length = 290
Score = 160 bits (406), Expect = 6e-47
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 17/161 (10%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
RP I + +NRP+ NA+ ++ + I D +VR V++ + FC+GA
Sbjct: 31 RPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKG-----FCSGA 85
Query: 101 DLKHRLTLNE-------DQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALAC 153
D K + + L + L + PV+A ++G+A GGGL +ALAC
Sbjct: 86 DQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALAC 145
Query: 154 DIRVAASNVRMGLVETKLAIIPG-AGGTQRLPRIVGIPLAA 193
D+RVA+ + + G + LPR +G A+
Sbjct: 146 DVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRAS 186
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 1.60A {Mycobacterium
marinum M} PDB: 3q1t_A
Length = 272
Score = 159 bits (404), Expect = 8e-47
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 4/150 (2%)
Query: 46 PGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
G++ L ++ P N++ + ++ I D +VR VL+R K F +G +
Sbjct: 22 HGVLNLVLDSP-GLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGK-AFSSGGSFELI 79
Query: 106 --LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ + + R + L ++ PV++ + G A G GL +AL DI VA++ +
Sbjct: 80 DETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAK 139
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
+ TKL + G P +VG+ A
Sbjct: 140 IIDGHTKLGVAAGDHAAICWPLLVGMAKAK 169
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS,
fatty acid metaboli metabolism, lyase, structural
genomics; 1.80A {Mycobacterium tuberculosis} PDB:
3q0j_A* 3pzk_A 3q0g_A*
Length = 278
Score = 159 bits (404), Expect = 9e-47
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 7/150 (4%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK- 103
+ + +NRPQA NALN+ ++ E+ +A + D ++ +++ K F AGAD+K
Sbjct: 32 DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAK-AFAAGADIKE 90
Query: 104 -HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
LT + F +T +L ++ P +A + G A GGG E+A+ CD+ +AA
Sbjct: 91 MADLTFADAFTADFFATWG----KLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTA 146
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+ G E KL ++PG GG+QRL R +G A
Sbjct: 147 KFGQPEIKLGVLPGMGGSQRLTRAIGKAKA 176
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 158 bits (402), Expect = 9e-47
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 2/149 (1%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ G++ L +NRP+ NA+ L++ + A++ D EVR +LL + F AG DL
Sbjct: 7 QDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGR-AFSAGQDLTE 65
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
D + + + L + P++ ++G A G G+ +AL D+R+AA
Sbjct: 66 FGDRKPD-YEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASF 124
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
++ ++P +G + LPR+VG+ A
Sbjct: 125 TTAFVRIGLVPDSGLSFLLPRLVGLAKAQ 153
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Mycobacterium abscessus}
Length = 265
Score = 158 bits (403), Expect = 9e-47
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
+V L MNRP RNAL+ +V + A + I D+ +R +L + +C G
Sbjct: 16 DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSA-----YCVGG 70
Query: 101 DLKHRLTLNEDQIRSFVSTLRYMT-CQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
DL + + ++ P++A ++G+ GGG EM DIRV+
Sbjct: 71 DLSDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSD 130
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+ GL E + ++PGAG RL R + A
Sbjct: 131 EHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKA 163
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural
genomics, riken S genomics/proteomics initiative, RSGI;
1.80A {Thermus thermophilus} SCOP: c.14.1.3
Length = 264
Score = 158 bits (401), Expect = 2e-46
Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 4/151 (2%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
RPG++E+ R + NA+ L + + E VR VLLR VF AG
Sbjct: 17 PRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGG-VFSAGGSFG 74
Query: 104 HR--LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
+ + + + R + + P PV+A ++ A G GL +ALA DI V
Sbjct: 75 LIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKG 134
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
R+ +L + G P +VG+ A
Sbjct: 135 TRLLDGHLRLGVAAGDHAVLLWPLLVGMAKA 165
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
marinum}
Length = 256
Score = 157 bits (400), Expect = 2e-46
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 2/148 (1%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ L +NRP+A NA N L + A+ D +V VLL + F AG DL
Sbjct: 15 RVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGR-GFSAGTDLAEMQ 73
Query: 107 TLNEDQIRSFVST-LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMG 165
D S R + L P P++ ++G G G + D+ +S R+
Sbjct: 74 ARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLK 133
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLAA 193
T L + P A + LP++VG AA
Sbjct: 134 CPFTSLGVAPEAASSYLLPQLVGRQNAA 161
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics;
1.58A {Legionella pneumophila subsp}
Length = 268
Score = 157 bits (400), Expect = 3e-46
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 5/145 (3%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
+ L MNR NA + L+ E+ +++ D VR ++L++ K F AGADL
Sbjct: 13 KVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGK-HFSAGADLTWMQ 71
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
E++ L + + P P +A++ G+A+GGG +A ACDI +A+++ R
Sbjct: 72 SMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSAR 131
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVG 188
E KL +IP A + + R +G
Sbjct: 132 FCFSEVKLGLIP-AVISPYVVRAIG 155
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A
{Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Length = 257
Score = 157 bits (399), Expect = 3e-46
Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 3/149 (2%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
G++ + ++ +T +E+ I D E + V+L FC D
Sbjct: 23 DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGP-SFCNEIDFTS 81
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ + + L SI VPV+A ++G E+ + DI +AA +
Sbjct: 82 FNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPV-TNAPEIPVMSDIVLAAESATF 140
Query: 165 G-LVETKLAIIPGAGGTQRLPRIVGIPLA 192
I+PG G P ++G
Sbjct: 141 QDGPHFPSGIVPGDGAHVVWPHVLGSNRG 169
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.10A {Mycobacterium abscessus}
Length = 265
Score = 157 bits (400), Expect = 3e-46
Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 10/153 (6%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
++ + +NRP RNA + T++EE+ A+ D ++R +L F AG
Sbjct: 16 DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPL-----FTAGL 70
Query: 101 DLKHRLTLNEDQIRSFVS-TLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAA 159
DL + + + P+L + G G+E+ALA DI +A
Sbjct: 71 DLASVAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIAD 130
Query: 160 SNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+E I P G T R PR G A
Sbjct: 131 ETATFAQLEVNRGIYPFGGATIRFPRTAGWGNA 163
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious
DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium
avium subsp} PDB: 3r9s_A 3r0o_A
Length = 267
Score = 157 bits (399), Expect = 4e-46
Identities = 51/148 (34%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R ++ + +NRP+ARNA+NA + + A+E + D EVR V+L FCAGADLK
Sbjct: 16 RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKA 75
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ I P +A ++G+A GGG E+ALA D+ VA +
Sbjct: 76 IARRENLYHPDH-PEWGFAGYVRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQF 134
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
GL E K +I AGG R+ + +A
Sbjct: 135 GLPEVKRGLIAAAGGVFRIAEQLPRKVA 162
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038,
NPPSFA, national project on prote structural and
functional analyses; 2.00A {Geobacillus kaustophilus}
Length = 257
Score = 156 bits (398), Expect = 4e-46
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 2/149 (1%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ + L +NRP NA + E+ A++ D VRCV++ + FCAG DL
Sbjct: 10 KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGR-AFCAGEDLSG 68
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
D S M L + PV+A ++G+A G G+ +ALACD R+ +
Sbjct: 69 VTE-EMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASF 127
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
+ ++P AG LPR+VG A
Sbjct: 128 APAFIHVGLVPDAGHLYYLPRLVGRAKAL 156
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET:
BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A*
1nzy_B*
Length = 269
Score = 156 bits (398), Expect = 5e-46
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 14/157 (8%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
G+ E+ + P+ RNAL+ ++E+ A+ D+ V V++ + FCAG
Sbjct: 10 EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDA-----FCAGF 64
Query: 101 DLKHRLTLN-----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDI 155
L+ D R M ++ + PVLA ++G A GGGL ++LA D+
Sbjct: 65 YLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDM 124
Query: 156 RVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+ A + + + I + L RIVG+ A
Sbjct: 125 AICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRA 161
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase,
lyase, crotonase, biocatalysis, beta-diketone; 1.46A
{Anabaena SP} PDB: 2j5s_A* 2j5g_D
Length = 263
Score = 155 bits (394), Expect = 2e-45
Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 4/151 (2%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
+ GI+E+ M+ + E A I D + R V+L D + A D
Sbjct: 30 DENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTG-SGDAWMAEIDFP 88
Query: 104 HRLTL-NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ N + + + L I VPV++ ++G+A E L DI +A+ N
Sbjct: 89 SLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHS-EYILTTDIILASENT 147
Query: 163 RM-GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+ I+PG G P +G+
Sbjct: 148 VFQDMPHLNAGIVPGDGVHILWPLALGLYRG 178
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus}
Length = 265
Score = 155 bits (394), Expect = 2e-45
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
R G+ L ++ P RN+ L ++ A + + D VR ++L + FC+GA
Sbjct: 14 RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPA-----FCSGA 68
Query: 101 DLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
+ R+ + + + PV+A ++G A G G+ +AL DIR+ A
Sbjct: 69 QIS-AAAETFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAE 127
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
R + + + + P A LPR+VG +AA
Sbjct: 128 EGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAA 160
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium marinum M}
Length = 233
Score = 154 bits (391), Expect = 2e-45
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 3/146 (2%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
I + M+ + N L T+ + + A++A D V +++ + VF G DLK
Sbjct: 14 AIGVIRMDDGKV-NVLGPTMQQALNEAIDAADRDN-VGALVIAGNHR-VFSGGFDLKVLT 70
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
+ + ++ +L S P PV+ G A G + + D RVAA +
Sbjct: 71 SGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQA 130
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLA 192
E + + + L +
Sbjct: 131 NEVAIGMTIPYAAMEVLKLRLTPSAY 156
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 154 bits (392), Expect = 3e-45
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
++ + ++RP+ NA++ ++EE+ + DE VR VLL + FC+G DL
Sbjct: 15 AVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRA-FCSGGDLT--- 70
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
+ + S+P PV+A + G+A G G +ALACD+ VAA L
Sbjct: 71 ---GGDTAGAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQL 127
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLAA 193
T++ ++P G + LP ++G +
Sbjct: 128 AFTRVGLMPDGGASALLPLLIGRARTS 154
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A
1rjm_A* 1rjn_A* 1q52_A 1q51_A
Length = 334
Score = 157 bits (398), Expect = 3e-45
Identities = 44/182 (24%), Positives = 71/182 (39%), Gaps = 19/182 (10%)
Query: 29 KEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL 88
LT I YH + V + NRP+ RNA V+E+ ++ R +V VLL
Sbjct: 49 DGFDDLTDITYHRHVD-DATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLL 107
Query: 89 ------RSLVKDVFCAGADLKHRLTLNE-----------DQIRSFVSTLRYMTCQLESIP 131
FC+G D + R D R+ + + + +P
Sbjct: 108 TGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMP 167
Query: 132 VPVLAVLDGSAYGGGLEMALACDIRVAAS-NVRMGLVETKLAIIPGAGGTQRLPRIVGIP 190
V+ +++G A GGG + + CD+ +A+ R + + G G+ L R VG
Sbjct: 168 KVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQK 227
Query: 191 LA 192
A
Sbjct: 228 FA 229
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.40A {Pseudomonas aeruginosa}
Length = 258
Score = 153 bits (388), Expect = 1e-44
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 2/149 (1%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R + + ++R RNA ++ ++ ++ A+ EE RC +L + + F AG DL
Sbjct: 19 RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFA-HGEHFTAGLDLME 77
Query: 105 RLTLNEDQIRSFVST-LRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ + P++ + G+ + G+E+ L DI VAA R
Sbjct: 78 LAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTR 137
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+E I P G T R PR G A
Sbjct: 138 FAHLEVLRGIPPLGGSTVRFPRAAGWTDA 166
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase;
2.04A {Synechocystis SP}
Length = 275
Score = 153 bits (389), Expect = 1e-44
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 11/159 (6%)
Query: 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL-----RSL 91
I+Y+ + GI ++ +NRP RNA V E+ A R D + VLL S
Sbjct: 12 ILYY---KAGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSD 68
Query: 92 VKDVFCAGADLKHR--LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEM 149
K FC+G D R +DQ ++ L + S+P V+A++ G A GGG +
Sbjct: 69 GKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQR-LIRSMPKVVIALVAGYAIGGGHVL 127
Query: 150 ALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
L CD+ +AA N G K+ G G+ L RIVG
Sbjct: 128 HLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVG 166
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, otholog; 2.15A {Mycobacterium avium subsp}
Length = 274
Score = 152 bits (387), Expect = 3e-44
Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 17/159 (10%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
+ +NRP A NAL+ ++ E+ A D+ V +++ R+ FC+GA
Sbjct: 18 DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRA-----FCSGA 72
Query: 101 DLKHRLTLNEDQI-------RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALAC 153
D+K + + T ++ PVL ++G G G++
Sbjct: 73 DVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTT 132
Query: 154 DIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
DI +A+ + ++ G R+ R++ +A
Sbjct: 133 DIVIASEQATFFDPHVSIGLVAG-RELVRVSRVLPRSIA 170
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics
center for infectious DI niaid; 1.75A {Mycobacterium
marinum}
Length = 278
Score = 152 bits (387), Expect = 3e-44
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 12/155 (7%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
R + + MNRP RNAL+ +++ ++ A + + D ++RC +L FCAG
Sbjct: 27 RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGY-----FCAGM 81
Query: 101 DLKHRLTLNEDQI---RSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
DLK S+ + + + P++A ++G A GG E+ DIRV
Sbjct: 82 DLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRV 141
Query: 158 AASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
AA + + G+ E K ++ P G RL R + +A
Sbjct: 142 AAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVA 176
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative; 2.05A
{Streptomyces coelicolor A3}
Length = 279
Score = 152 bits (387), Expect = 3e-44
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
G+ + + RP NAL ++ + + VR ++L + FC+G D+
Sbjct: 24 TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGR-GFCSGGDVDE 82
Query: 105 R----LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS 160
L+++ ++ F + + P PV+A L G A G G +ALA D RVA
Sbjct: 83 IIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADP 142
Query: 161 NVRMGLVETKLAIIPG-AGGTQRLPRIVGIPLAA 193
+ R + T++ + G G LPR+VG+ A
Sbjct: 143 STRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHAT 176
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics,
structural genomics consortium, SGC, unknown function;
1.90A {Homo sapiens} PDB: 2fw2_A
Length = 261
Score = 151 bits (383), Expect = 7e-44
Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 10/162 (6%)
Query: 37 IIYHNSPERPGIVELC-MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDV 95
I+ ++ G + + N+LN ++ E+ +A+ D+ + VLL + V V
Sbjct: 7 IVVR---KQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSA-VGSV 61
Query: 96 FCAGADLKHRL----TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMAL 151
FC G D + + + + +R P++ ++G A G G +
Sbjct: 62 FCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILP 121
Query: 152 ACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
CD+ A T P T P+I+G A
Sbjct: 122 LCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASAN 163
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 159 bits (404), Expect = 1e-43
Identities = 47/149 (31%), Positives = 81/149 (54%), Gaps = 5/149 (3%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
G+ + + P N+L+ ++ + + E +V+ +++ K F G D+
Sbjct: 17 GVAVITLINPPV-NSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFG 74
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
N + ++ ++ +T LE+ P +A +DG A GGGLE+A+AC R++A +
Sbjct: 75 EMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQ 134
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+GL E +L +IPG GGTQRLPR+VG+ A
Sbjct: 135 LGLPELQLGVIPGFGGTQRLPRLVGLTKA 163
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Length = 298
Score = 151 bits (384), Expect = 1e-43
Identities = 38/161 (23%), Positives = 58/161 (36%), Gaps = 17/161 (10%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLL----RSLVKDVFCAGA 100
G+ + NR NA L A++ D +R ++L R FCAGA
Sbjct: 37 PGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRG-----FCAGA 91
Query: 101 DLKHR--------LTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALA 152
L + + PV+A ++G G GL AL
Sbjct: 92 YLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALM 151
Query: 153 CDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
CD+R AA+ + V + +I G + LPR+ +A
Sbjct: 152 CDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVAL 192
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for
infectious disease, S non-pathogenic mycobacterium
species, ortholog; 1.50A {Mycobacterium avium}
Length = 267
Score = 150 bits (381), Expect = 2e-43
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 6/147 (4%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
+ L +N P RNAL+ LV ++ + D VR V+L FCAGADL
Sbjct: 20 PVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGG-TFCAGADLSEAG 78
Query: 104 --HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
+ D + + + +PV+A +DG GG + ACDI VA
Sbjct: 79 SGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPR 138
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVG 188
L E ++ + P LP++
Sbjct: 139 SSFALTEARIGVAPAIISLTLLPKLSA 165
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 2.20A {Mycobacterium marinum}
Length = 265
Score = 149 bits (380), Expect = 2e-43
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 6/148 (4%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R I+ + +NRP+A+N++NA + + A++ + D + +L FCAG DLK
Sbjct: 22 RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTG-AGGSFCAGMDLKA 80
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ R + P++A ++G A GG E+ALA D+ VAA +
Sbjct: 81 FARGENVVVEG-----RGLGFTERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSAF 135
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
G+ E K ++ G GG RLP + +A
Sbjct: 136 GIPEVKRGLVAGGGGLLRLPERIPYAIA 163
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 158 bits (401), Expect = 3e-43
Identities = 59/150 (39%), Positives = 83/150 (55%), Gaps = 5/150 (3%)
Query: 47 GIVELCMNRPQAR-NALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK-- 103
GIVEL + N N + E+ AV+AI+ D V+ V++ S KDVF GAD+
Sbjct: 16 GIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEF 74
Query: 104 -HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
L + ++ + + E + VP +A ++G A GGGLEM LA D RV A +
Sbjct: 75 VENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSA 134
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
++GL E KL I PG GGT RLPR++G+ A
Sbjct: 135 KIGLPEVKLGIYPGFGGTVRLPRLIGVDNA 164
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH;
polyketide synthase, enoyl COA hydratase,isomerase;
2.32A {Bacillus subtilis}
Length = 267
Score = 149 bits (379), Expect = 3e-43
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 5/144 (3%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--H 104
+ + +RP+A N +N TL+EE L + V V+L L + VFC GAD + +
Sbjct: 16 SVCYITFHRPEANNTINDTLIEECLQVLNQCE-TSTVTVVVLEGLPE-VFCFGADFQEIY 73
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
+ + S L + +L++ P ++ + G GGL A DI +A
Sbjct: 74 QEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASF 133
Query: 165 GLVETKLAIIPGAGGTQRLPRIVG 188
L E + P A L R +G
Sbjct: 134 SLSELLFGLYP-ACVLPFLIRRIG 156
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 149 bits (379), Expect = 4e-43
Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 11/173 (6%)
Query: 21 PNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGD 80
P++ E R I Y I + +NRP+A NA N L++E+ A D
Sbjct: 6 PSWRRPSRPEQRTEMYIDYD---VSDRIATITLNRPEAANAQNPELLDELDAAWTRAAED 62
Query: 81 EEVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRY-----MTCQLESIPVPVL 135
+V ++LR+ K F AG DL+ + + F+ + + ++P P +
Sbjct: 63 NDVSVIVLRANGK-HFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSI 121
Query: 136 AVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
A + G GGL + CD+ +AA + + I G +G
Sbjct: 122 AAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI--GGVEYHGHTWELG 172
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.09A {Mycobacterium abscessus}
Length = 256
Score = 147 bits (374), Expect = 1e-42
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
R ++ + +NRP ARNA+N + + + A + + ++ ++ FCAG DLK
Sbjct: 14 RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITG-AGGNFCAGMDLK- 71
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
V + R + P++A ++G A GG E+ L+CD+ VA + +
Sbjct: 72 -----AFVSGEAVLSERGLGFTNVPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKF 126
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
G+ E K ++ GAGG RLP + +A
Sbjct: 127 GIPEVKRGLVAGAGGLLRLPNRIPYQVA 154
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS;
acetyltransferase, structural genomics, structural
genomics consortium, SGC, unknown function; 2.28A {Homo
sapiens} SCOP: c.14.1.3
Length = 291
Score = 148 bits (376), Expect = 2e-42
Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 7/152 (4%)
Query: 47 GIVELC-MNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHR 105
G ++ R +NALN +++EI+ A+ + D+ + VL + VFC G D +
Sbjct: 32 GFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADD-SKLVLFSA-AGSVFCCGLDFGYF 89
Query: 106 LTL----NEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
+ V T++ P++ ++G A G G + CD+ A
Sbjct: 90 VKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK 149
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
T P + P+++G A
Sbjct: 150 AWFQTPYTTFGQSPDGCSSITFPKMMGKASAN 181
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A
{Mycobacterium abscessus} PDB: 3qka_A
Length = 262
Score = 147 bits (373), Expect = 3e-42
Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 3/148 (2%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ + +NRP ARNA++ +L A D E +L FCAGADLK
Sbjct: 18 AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNG-TFCAGADLKA 76
Query: 105 RLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRM 164
T +++ M + PV+A + G A GG+E+AL CD+RV + +
Sbjct: 77 MGTDRGNEL--HPHGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVL 134
Query: 165 GLVETKLAIIPGAGGTQRLPRIVGIPLA 192
G+ + + GGT RLPR++G A
Sbjct: 135 GVFCRRWGVPLIDGGTIRLPRLIGHSRA 162
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 151 bits (383), Expect = 3e-42
Identities = 46/172 (26%), Positives = 68/172 (39%), Gaps = 25/172 (14%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLR-SLVKD-------VF 96
R G+ L M R NA + V+++ TAV+ D VR LLR ++ VF
Sbjct: 174 RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVF 233
Query: 97 CAGADLKHRLTLNEDQIRSFVSTLRYMTCQ----------------LESIPVPVLAVLDG 140
AG +LK+ + + + I P +A +DG
Sbjct: 234 SAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDG 293
Query: 141 SAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
A GGG ++ L D +A+S+ L K IIPG RL R G ++
Sbjct: 294 FAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPG-AANLRLGRFAGPRVS 344
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 155 bits (393), Expect = 5e-42
Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 8/146 (5%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + + P NA++ T++ E+ ++ D V+ +++ FCAGAD+
Sbjct: 30 SLAMIRLCNPPV-NAVSPTVIREVRNGLQKAGSDHTVKAIVICG-ANGNFCAGADIHGFS 87
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
L + +++ PVLA + G A GGGLE+AL C R+A + R+GL
Sbjct: 88 AFTPGL------ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGL 141
Query: 167 VETKLAIIPGAGGTQRLPRIVGIPLA 192
E L I+PGA GTQ LPR+VG+P+A
Sbjct: 142 PEVTLGILPGARGTQLLPRVVGVPVA 167
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas
campestris PV} PDB: 3m6m_A
Length = 305
Score = 146 bits (371), Expect = 1e-41
Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 15/164 (9%)
Query: 44 ERPGIVELCMNRPQA----RNALNATLVEEILTAVEAI----RGDEEVRCVLLRSLVKDV 95
+ + + M+ A R + LV++I + + ++ + DV
Sbjct: 38 PQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDV 97
Query: 96 FCAGADLKHRLTLNEDQIRSFVSTLRYMTC-------QLESIPVPVLAVLDGSAYGGGLE 148
F G DL L + R+ + +A++ G+A GGG E
Sbjct: 98 FNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFE 157
Query: 149 MALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
AL+C +A V MGL E + PG G + + + LA
Sbjct: 158 AALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLA 201
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 144 bits (365), Expect = 6e-41
Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 6/151 (3%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI ++ NRP+ +NA+N + EI+ A++A D+ + VL + D + +G DL +
Sbjct: 35 GITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGN--GDYYSSGNDLTNFT 92
Query: 107 TLN----EDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ E++ ++ LR P P++AV++G A G + + D A+
Sbjct: 93 DIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRA 152
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
+ L P + P+I+ A
Sbjct: 153 TFHTPFSHLGQSPEGCSSYTFPKIMSPAKAT 183
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
PSI-2, protein structure initiative; 2.50A {Pseudomonas
syringae PV}
Length = 232
Score = 141 bits (359), Expect = 1e-40
Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 6/147 (4%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
G+ L +N + NA++ ++ A++ D V++ + G DLK
Sbjct: 15 GVATLTLNNGKV-NAISPDVIIAFNAALDQAEKDR--AIVIVTGQPG-ILSGGYDLKVMT 70
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS-NVRMG 165
+ E I V+ + ++ S P P++ G A G + L+ D R+ + +G
Sbjct: 71 SSAEAAIN-LVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIG 129
Query: 166 LVETKLAIIPGAGGTQRLPRIVGIPLA 192
L E ++ + G + +
Sbjct: 130 LNEVQIGMTMHHAGIELARDRLRKSAF 156
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold,
inter-trimer contacts; 2.10A {Saccharomyces cerevisiae}
SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Length = 280
Score = 142 bits (361), Expect = 2e-40
Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 13/159 (8%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + P NAL + +E + +V +++S F +GAD K
Sbjct: 18 PFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQS-SGRFFSSGADFKGIA 76
Query: 107 TLNEDQ-----------IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDI 155
D + +FV+ Y+T ++ L+G A G + CDI
Sbjct: 77 KAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDI 136
Query: 156 RVAAS-NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAA 193
+ + V + L +I G T LP G
Sbjct: 137 VYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTY 175
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural
genomics center for infectious lyase; 1.55A
{Mycobacterium smegmatis}
Length = 286
Score = 143 bits (362), Expect = 2e-40
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 3/146 (2%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
+ G+V L +NRPQA NAL+ ++ + A + DE VR V+L + K FCAG DLK
Sbjct: 32 DERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGK-AFCAGHDLK 90
Query: 104 -HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
R + + + + ++ +P PV+A + G A G ++ CD+ VA +
Sbjct: 91 EMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDA 150
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVG 188
R + + + G L R VG
Sbjct: 151 RFAVSGINVGLFCSTPGVA-LSRNVG 175
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase
superfamily, dimer of trimers, PSI-2, NYSGXRC,
structural genomics; 2.32A {Ruegeria pomeroyi}
Length = 263
Score = 139 bits (353), Expect = 2e-39
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 9/151 (5%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
G++ L + R + L+ ++ + A+ GD+ V +++ + +FCAG DLK
Sbjct: 13 LSEGVLTLTLGRAP-AHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGR-IFCAGHDLK 70
Query: 104 --HRLTLNEDQIRSFVSTLR----YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRV 157
R + D+ R+FV+ L + L P P +A+++G A GL++ ACD+
Sbjct: 71 EIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAY 130
Query: 158 AASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
A+ R L + + R++G
Sbjct: 131 ASPAARFCLPGVQNGGFCTTPAV-AVSRVIG 160
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty
acid metabolism, transit peptide, lipid Met crontonase,
mitochondrion, CAsp; 2.3A {Homo sapiens}
Length = 287
Score = 138 bits (349), Expect = 1e-38
Identities = 35/183 (19%), Positives = 77/183 (42%), Gaps = 5/183 (2%)
Query: 12 PARVKVTKWPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEIL 71
+ N GR+ ++ ++ + GI + ++ P+ RN L+ +++ +
Sbjct: 7 HSSGVDLGTENLYFQSMGAGRRESEPRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQ 66
Query: 72 TAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--HRLTLNEDQIRSFVSTLRYMTCQLES 129
+ + +++ +++ + VF +G DLK + F + + M + +
Sbjct: 67 SDILHDADSNDLKVIIISAEGP-VFSSGHDLKELTEEQGRDYHAEVFQTCSKVMM-HIRN 124
Query: 130 IPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGI 189
PVPV+A+++G A G ++ +CDI VA+ + + G L R V
Sbjct: 125 HPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPR 183
Query: 190 PLA 192
+A
Sbjct: 184 KVA 186
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving,
burkholderia xenovorans LB400 crotonase; 1.50A
{Burkholderia xenovorans}
Length = 556
Score = 142 bits (359), Expect = 4e-38
Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 14/180 (7%)
Query: 22 NYST-SVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGD 80
Y +S G T I + + N+ + + E+ A++ IR +
Sbjct: 19 QYKHWKLSFNGPVATLGI-----DIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFE 73
Query: 81 E-EVRCVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLE----SIPVPVL 135
EVR V+L SL VFC+GA++ +F LE + L
Sbjct: 74 HPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFL 133
Query: 136 AVLDGSAYGGGLEMALACDIRVAA--SNVRMGLVETK-LAIIPGAGGTQRLPRIVGIPLA 192
A ++G+ GGG E+ALACD + + L E L ++PG GG R+ +
Sbjct: 134 AAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHD 193
Score = 49.2 bits (117), Expect = 1e-06
Identities = 30/178 (16%), Positives = 56/178 (31%), Gaps = 13/178 (7%)
Query: 26 SVSKEGRKLTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDE-EVR 84
++ + R T E P ++ + N E A+ ++R +E V
Sbjct: 271 TIDRAKRIATFTAKAPQTEPPASIDAIVA--AGANWWPLKFAREFDDAILSMRTNELAVG 328
Query: 85 CVLLRSLVKDVFCAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLD-GSAY 143
+ R+ AD + +R + LR +++ + A+++ GS +
Sbjct: 329 TWVFRTEGDARHLLAADASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCF 388
Query: 144 GGGL-EMALACDIRV-------AASNVRMGLVETKLAIIPGAGGTQRLP-RIVGIPLA 192
G E+A A D + L E + P RL R
Sbjct: 389 AGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYPMVTHQSRLARRFYEETEP 446
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium smegmatis} PDB:
3njb_A
Length = 333
Score = 129 bits (327), Expect = 4e-35
Identities = 35/178 (19%), Positives = 59/178 (33%), Gaps = 34/178 (19%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ + NRP+ NA+ A E+ VE D +V +L+ + FCAG DL
Sbjct: 42 TDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEG-FCAGFDLSA 100
Query: 105 R------------------------------LTLNEDQIRSFVSTLRYMTCQLESIPVPV 134
+ +S L P
Sbjct: 101 YAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPT 160
Query: 135 LAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
+ + G GG ++AL D +AA++ ++G ++ +P AG +G A
Sbjct: 161 VVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG---LWAHRLGDQRA 215
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 2.30A {Shewanella oneidensis}
Length = 407
Score = 93.3 bits (232), Expect = 3e-21
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 9/162 (5%)
Query: 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK 93
+ Q + S + G+V L N +A NAL+ +V + + + D + CV+L +
Sbjct: 40 VFQTLATASGKLVGVVTL--NVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGE 97
Query: 94 DVFCAGADLK--HRLTLNEDQ-----IRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGG 146
FCAG D++ + ++ + F + L + PVL DG GGG
Sbjct: 98 KAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGG 157
Query: 147 LEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVG 188
L + +V R+ + E + + P GG+ L R+ G
Sbjct: 158 LGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG 199
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A,
beta-hydroxyisobutyryl acid, querceti structural
genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Length = 363
Score = 92.4 bits (230), Expect = 3e-21
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 8/152 (5%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK--- 103
G++ L NRP+ NAL ++ +I ++ D E ++++ FCAG D++
Sbjct: 17 GVITL--NRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVIS 74
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
+ F + + S P +A++ G GGG+ +++ RVA
Sbjct: 75 EAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCL 134
Query: 164 MGLVETKLAIIPGAGGT---QRLPRIVGIPLA 192
+ ET + + P GG RL +G LA
Sbjct: 135 FAMPETAIGLFPDVGGGYFLPRLQGKLGYFLA 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 6e-07
Identities = 62/341 (18%), Positives = 110/341 (32%), Gaps = 110/341 (32%)
Query: 20 WPNYSTSVSKEG--RKLTQIIYHNSPERPGIVELCMNRPQ----ARNALNATLVEE---- 69
W N S E L +++Y P + N + L L +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 70 ---ILTAVEAIRGDEEV------RC-VLLRSLVKDV--FCAGADLKH------RLTLNED 111
+L V+ + + C +LL + K V F + A H +TL D
Sbjct: 246 CLLVLLNVQ----NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 112 QIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAAS---------NV 162
+++S + +Y+ C+ + +P VL I +A S N
Sbjct: 302 EVKSLLL--KYLDCRPQDLPREVLTT-----------NPRRLSI-IAESIRDGLATWDNW 347
Query: 163 RMGLVETKLAII--------PGAGGTQR--------LPRIVGIP---LAALYEDLLNNDC 203
+ + II P R P IP L+ ++ D++ +D
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPA---EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 204 MSSLDTRYMWCTPYRRGLV-------------VTLVIKFSQP----VHISALIVWNYNAS 246
M ++ ++ LV + L +K +H IV +YN
Sbjct: 405 MVVVNK----L--HKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIVDHYN-- 454
Query: 247 IEMSYCGFSLLNTWGDRY---YLG--LNGIELYDEFGDLIP 282
I ++ L+ + D+Y ++G L IE + L
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM-TLFR 494
Score = 39.1 bits (90), Expect = 0.002
Identities = 49/306 (16%), Positives = 82/306 (26%), Gaps = 103/306 (33%)
Query: 117 VSTLRYMTCQLESIPVPVLAVLDGSAYGGG---LEMALACDIRVAASNVRMGLVETKLAI 173
LR +L P + ++DG G G + A V+ K+
Sbjct: 137 YLKLRQALLELR--PAKNV-LIDGVL-GSGKTWV----------ALDVCLSYKVQCKM-- 180
Query: 174 IPGAG-----GTQRLPRIVGIPLAALYEDLLNNDC-----MSSL----------DTRYMW 213
P V L L + N S++ R +
Sbjct: 181 -DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 214 CTPYRRGLVV------------------TLVIKFSQPVHISALIVWNY-NASIEMSYCGF 254
PY L+V L+ + V L + S++
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV-TDFLSAATTTHISLDHHSMTL 298
Query: 255 ------SLLNTWGDRYYLGLNGIELYDEFGDLIPLTAENIFAYPAGVHILHGMENDAR-- 306
SLL + L +L E P +I A + + A
Sbjct: 299 TPDEVKSLLLKY-----LDCRPQDLPREVLTTNPR-RLSIIA--ESIR-----DGLATWD 345
Query: 307 -----TCDKLIDGVNNIADGTHSWLAPILPQEMFKANG-F---------VLVILKEMWME 351
CDKL I + + + L P ++MF F +L ++ W +
Sbjct: 346 NWKHVNCDKL----TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI---WFD 398
Query: 352 IKFTAV 357
+ + V
Sbjct: 399 VIKSDV 404
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.033
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 22/46 (47%)
Query: 26 SVSK-EGR-KLTQIIYHNSPER-PGIVELCMNRPQARNALNATLVE 68
++ K + KL Y + + P + A+ AT +E
Sbjct: 21 ALKKLQASLKL----Y--ADDSAPAL------------AIKAT-ME 47
Score = 28.0 bits (61), Expect = 3.3
Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 7/19 (36%)
Query: 230 SQPVHISALIVWNYNASIE 248
S P AL + A++E
Sbjct: 36 SAP----ALAI---KATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.22
Identities = 46/282 (16%), Positives = 79/282 (28%), Gaps = 122/282 (43%)
Query: 3 HMKFILRLSPARVKVTKWPNYSTSV--SKEGRKLTQ----IIYHNSPERPGIVE------ 50
H K S + V P T ++G+++ + +I+ + E
Sbjct: 1652 HFKDTYGFSILDI-VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 51 ------LCMNRPQARNALNATLVEEI----LTAVE-AIRGDEEVRCVLLRS---LVKDVF 96
+ L+AT + LT +E A L+S + D
Sbjct: 1711 NEHSTSYTFRSEK--GLLSAT---QFTQPALTLMEKAA-----FE--DLKSKGLIPADAT 1758
Query: 97 CAG------------ADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYG 144
AG AD+ +++ E + V R G
Sbjct: 1759 FAGHSLGEYAALASLADV---MSI-ESLVE--VVFYR------------------GMT-- 1792
Query: 145 GGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCM 204
+++A+ D + SN M +AI PG R+ A+ ++ L
Sbjct: 1793 --MQVAVPRD-ELGRSNYGM------IAINPG--------RVA----ASFSQEALQYVVE 1831
Query: 205 SSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNAS 246
R G +V + V NYN
Sbjct: 1832 RVGK---------RTGWLV-------EIV--------NYNVE 1849
Score = 31.2 bits (70), Expect = 0.73
Identities = 43/256 (16%), Positives = 70/256 (27%), Gaps = 116/256 (45%)
Query: 20 WPNYSTSVSKEGRKLTQIIYHNSPERPGIVELCMNRPQ---ARNALNATLVEEILTAVE- 75
W ++ SV K L I G+ R +L +++E+ L E
Sbjct: 289 WESFFVSVRKAITVLFFI---------GV------RCYEAYPNTSLPPSILEDSLENNEG 333
Query: 76 ------AIRG--DEEVRCVLLR-------------SLV--KDVF-CAG--ADLKH-RLTL 108
+I E+V+ + + SLV +G L LTL
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 109 -------NEDQIR--------SFVST-LR--------YMTCQLESIP------------- 131
DQ R F + L + + I
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 132 ---VPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIP------------- 175
+PV DGS D+RV + ++ +V+ + +P
Sbjct: 454 DIQIPVYDTFDGS------------DLRVLSGSISERIVDC-IIRLPVKWETTTQFKATH 500
Query: 176 ----GAGGTQRLPRIV 187
G GG L +
Sbjct: 501 ILDFGPGGASGLGVLT 516
>1f53_A Yeast killer toxin-like protein; killer toxin-like protein,SKLP,
crystallin family; NMR {Streptomyces SP} SCOP: b.11.1.4
Length = 84
Score = 29.4 bits (65), Expect = 0.45
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 238 LIVWNYNASIEMSYC-----GFSLLNTWGDRYYLGLNGIELYDEFGDLIPLTAENIFAYP 292
L +W+++ + C W D+ G N + YD GD + + + YP
Sbjct: 13 LKIWSHSGGQQSVDCYANRGRIDFGGWWVDKISTGNNDLIYYDANGDSVRVDRWHDITYP 72
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_A*
Length = 742
Score = 30.0 bits (66), Expect = 1.3
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 265 YLGLNGIELYDEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADGTHS 324
++GL G + E D + +T +N+ ++P +H G+ K +G D T
Sbjct: 69 WMGLLGPTIQAEVYDTVVITLKNMASHPVSLHA-VGVSY-----WKASEGAEY-DDQTSQ 121
Query: 325 WL---APILPQEMF 335
+ P
Sbjct: 122 REKEDDKVFPGGSH 135
>3jtp_A Adapter protein MECA 1; MECA;adaptor protein;degradation TAG,
competence, sporulation, protein binding; 2.17A
{Bacillus subtilis} PDB: 2y1r_I* 3pxg_a
Length = 98
Score = 28.2 bits (63), Expect = 1.6
Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 17/90 (18%)
Query: 224 TLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLNTWGDRYYLGLNGIEL-YDEFGDLIP 282
V++F +I + S + L ++ +RYYL ++ ++ +E + +
Sbjct: 8 QFVLRFGD---FEDVI----SLSKLNVNGSKTTLYSFENRYYLYVDFCDMTDEEVENQLS 60
Query: 283 LTAENIFAYPAGV--HIL--HG---MENDA 305
+ E +A + + H L +G + A
Sbjct: 61 IMLE--YANESSISIHRLEEYGKLIISEHA 88
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3
Length = 306
Score = 29.3 bits (65), Expect = 2.0
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 265 YLGLNGIELYDEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADGTHS 324
GL G LY E GD++ + +N P +H G++ K +G + +D T
Sbjct: 54 TSGLLGPTLYAEVGDIMKVHFKNKAHKPLSIH-AQGIKY-----SKFSEGA-SYSDHTLP 106
Query: 325 WL---APILPQEMF 335
+ P + +
Sbjct: 107 MEKMDDAVAPGQEY 120
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 29.0 bits (63), Expect = 3.0
Identities = 5/88 (5%), Positives = 20/88 (22%)
Query: 240 VWNYNASIEMSYCGFSLLNTWGDRYYLGLNGIELYDEFGDLIPLTAENIFAYPAGVHILH 299
W N + ++ ++ + + + + N + +L
Sbjct: 437 FWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLA 496
Query: 300 GMENDARTCDKLIDGVNNIADGTHSWLA 327
G+ + + +
Sbjct: 497 GLGLVPDAPSPRLAHMPQATESVDEVFG 524
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 27.5 bits (61), Expect = 3.1
Identities = 3/69 (4%), Positives = 8/69 (11%), Gaps = 10/69 (14%)
Query: 245 ASIEMSYCGFSLLNTWGDRYYLGLNGIEL-YDEFGDLIPLTAENIFAYPAGV--HIL--H 299
+ + G ++ Y I
Sbjct: 35 LLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQT--IHYTPRAKKVIELSM 92
Query: 300 G---MENDA 305
+
Sbjct: 93 DEARKLGHS 101
>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase,
patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A
Length = 360
Score = 28.6 bits (64), Expect = 3.2
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 130 IPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
I +P AV+ G+ + LA I +A
Sbjct: 153 INMPQDAVIRGNYDDVMSPLNLARAIDLALEL 184
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron
aquisition, structural genomics, PSI-2, protein
structure initiative; HET: CIT; 1.80A {Shigella flexneri
2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A*
3c8h_A 3mga_A*
Length = 403
Score = 28.0 bits (62), Expect = 5.7
Identities = 10/101 (9%), Positives = 28/101 (27%), Gaps = 8/101 (7%)
Query: 122 YMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGLVETKLAIIPGAGGTQ 181
+ T + + P+ +LDG + + + + A+
Sbjct: 187 FTTGDVTAEERPLAVLLDGEFWAQSMPVWPVLTSLTHRQQLP-------PAVYVLIDAID 239
Query: 182 RLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCT-PYRRGL 221
R +P A + + + + + + R +
Sbjct: 240 TTHRAHELPCNADFWLAVQQELLPLVKVIAPFSDRADRTVV 280
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase,
homodimer, rossman fold, 4 domai L-histidine
biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A
{Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A*
1kar_A
Length = 434
Score = 27.5 bits (62), Expect = 8.0
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVR 84
II NS +L M + + V +IL V+A RGDE +R
Sbjct: 3 FNTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKA-RGDEALR 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.425
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,663,792
Number of extensions: 353408
Number of successful extensions: 761
Number of sequences better than 10.0: 1
Number of HSP's gapped: 604
Number of HSP's successfully gapped: 91
Length of query: 358
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 263
Effective length of database: 4,049,298
Effective search space: 1064965374
Effective search space used: 1064965374
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.0 bits)