RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy504
(358 letters)
>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 260
Score = 128 bits (323), Expect = 1e-35
Identities = 52/156 (33%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Query: 37 IIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVF 96
II + + + +NRP+A NAL L+EE+ A+E D V ++L K
Sbjct: 6 IITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFA 65
Query: 97 CAGADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
+ + N + + I PV+A ++G A GGG E+A+ CDI
Sbjct: 66 AGADIKEMQ---NRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDII 122
Query: 157 VAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
A + G E L IPGAGGTQRL R VG LA
Sbjct: 123 YAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLA 158
>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 79.8 bits (195), Expect = 9e-18
Identities = 79/149 (53%), Positives = 111/149 (74%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
E GIV L +NR +N+L+ L++ + AV+A++ D++VR +++RS V +FCAGADLK
Sbjct: 12 ENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLK 71
Query: 104 HRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVR 163
R ++ ++ FVS +R + + ++PVP +A +DG A GGGLE+ALACDIRVAAS+ +
Sbjct: 72 ERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAK 131
Query: 164 MGLVETKLAIIPGAGGTQRLPRIVGIPLA 192
MGLVETKLAIIPG GGTQRLPR +G+ LA
Sbjct: 132 MGLVETKLAIIPGGGGTQRLPRAIGMSLA 160
>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 275
Score = 80.2 bits (196), Expect = 9e-18
Identities = 36/183 (19%), Positives = 68/183 (37%), Gaps = 10/183 (5%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKH 104
+ ++ + +NRP+ RNA+N E++ + I D + R V++ K +
Sbjct: 11 QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDM 70
Query: 105 RLTLNEDQIRSFVSTLRYMTCQ----------LESIPVPVLAVLDGSAYGGGLEMALACD 154
+ + Y+ +E P PV+A + G GGG+++ ACD
Sbjct: 71 ASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACD 130
Query: 155 IRVAASNVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWC 214
IR + + E + + G QRLP+++G M+
Sbjct: 131 IRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLV 190
Query: 215 TPY 217
+
Sbjct: 191 SRV 193
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus
thermophilus [TaxId: 274]}
Length = 253
Score = 77.8 bits (190), Expect = 5e-17
Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 12/216 (5%)
Query: 44 ERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLK 103
E+ + + +N P+ RN L+ + +L A++ + D VR V+L K
Sbjct: 5 EKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAF 64
Query: 104 HRLTLNEDQIRSFVSTL--RYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASN 161
++ +L + ++ + P P +A ++G A GG +ALACD+ V
Sbjct: 65 LERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEE 124
Query: 162 VRMGLVETKLAIIPGAGGTQRLPRIVGIPLAAL---------YEDLLNNDCMSSLDTRYM 212
R+G E K A + L R VG A + ++ +
Sbjct: 125 ARLGYTEVK-IGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGK 183
Query: 213 WCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIE 248
+ + L++ +E
Sbjct: 184 ALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLE 219
>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 297
Score = 66.3 bits (160), Expect = 6e-13
Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 18/140 (12%)
Query: 34 LTQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVK 93
LT I YH + V + NRP+ RNA V+E+ ++ R +V VLL
Sbjct: 17 LTDITYHRHVDD-ATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGP 75
Query: 94 DVFCAGADLKHRLTLNE-----------------DQIRSFVSTLRYMTCQLESIPVPVLA 136
G D R+ + + + +P V+
Sbjct: 76 SPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVIC 135
Query: 137 VLDGSAYGGGLEMALACDIR 156
+++G A GGG + + CD+
Sbjct: 136 LVNGWAAGGGHSLHVVCDLT 155
>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas
sp., strain CBS-3 [TaxId: 306]}
Length = 269
Score = 60.6 bits (145), Expect = 4e-11
Identities = 42/216 (19%), Positives = 75/216 (34%), Gaps = 13/216 (6%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCA----GADL 102
G+ E+ + P+ RNAL+ ++E+ A+ D+ V V++ L
Sbjct: 12 GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPL 71
Query: 103 KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ D R M ++ + PVLA ++G A GGGL ++LA D+ + A +
Sbjct: 72 DKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSA 131
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYRRGLV 222
+ + I + L RIVG+ A + + GLV
Sbjct: 132 KFVCAWHTIGIGNDTATSYSLARIVGMRRA---------MELMLTNRTLYPEEAKDWGLV 182
Query: 223 VTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLN 258
+ K + A + +
Sbjct: 183 SRVYPKDEFREVAWKVARELAAAPTHLQVMAKERFH 218
>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit,
N-terminal domain {Pseudomonas fragi [TaxId: 296]}
Length = 310
Score = 52.4 bits (124), Expect = 2e-08
Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 8/176 (4%)
Query: 47 GIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAG---ADL 102
GIVEL + + ++ N N + E+ AV+AI+ D V+ V++ S KDVF G +
Sbjct: 16 GIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEF 74
Query: 103 KHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
L + ++ + + E + VP +A ++G A GGGLEM LA D RV A +
Sbjct: 75 VENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSA 134
Query: 163 RMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLNNDCMSSLDTRYMWCTPYR 218
++GL E KL I PG GGT RLPR + + + + + +
Sbjct: 135 KIGLPEVKLGIYPGFGGTVRLPR---LIGVDNAVEWIASGKENRAEDALKVSAVDA 187
>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA
isomerase {Human (Homo sapiens) [TaxId: 9606]}
Length = 245
Score = 52.1 bits (123), Expect = 3e-08
Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 6/142 (4%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
GI ++ NRP+ +NA+N + EI+ A++A D+ + V + D + +G DL +
Sbjct: 12 GITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITV--LTGNGDYYSSGNDLTNFT 69
Query: 107 TLNEDQIRSFVSTLRYMTCQL----ESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNV 162
+ + + + P P++AV++G A G + + D A+
Sbjct: 70 DIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRA 129
Query: 163 RMGLVETKLAIIPGAGGTQRLP 184
+ L P + P
Sbjct: 130 TFHTPFSHLGQSPEGCSSYTFP 151
>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 266
Score = 52.0 bits (123), Expect = 3e-08
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 10/122 (8%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCA-------- 98
+ + P NAL + +E + +V +++S +
Sbjct: 14 PFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAK 73
Query: 99 --GADLKHRLTLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIR 156
G D + + +FV+ Y+T ++ L+G A G + CDI
Sbjct: 74 AQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIV 133
Query: 157 VA 158
+
Sbjct: 134 YS 135
>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218
{Thermus thermophilus [TaxId: 274]}
Length = 263
Score = 47.1 bits (110), Expect = 1e-06
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 45 RPGIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFC 97
RPG++E+ R + NA+ L + + E VR VLLR
Sbjct: 17 RPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSA 68
>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia
coli [TaxId: 562]}
Length = 261
Score = 46.8 bits (109), Expect = 1e-06
Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAGADLKHRL 106
+ + N + NAL+ +++++ A+ + E+RC++LR+ + H L
Sbjct: 13 KVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRP-EIRCIILRAPSGSKVFSAGHDIHEL 71
Query: 107 TLNEDQIRSFVSTLRYMTCQLESIPVPVLAVLDGSAYGGGLEMALACDIRVAASNVRMGL 166
S+ LR +T ++ P P++++++GS +GG EM ++ D+ +AAS +
Sbjct: 72 PSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSM 131
Query: 167 VETK 170
Sbjct: 132 TPVN 135
>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus
erythropolis [TaxId: 1833]}
Length = 249
Score = 46.6 bits (109), Expect = 2e-06
Identities = 6/39 (15%), Positives = 15/39 (38%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRC 85
G++ + ++ +T +E+ I D E +
Sbjct: 22 GVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKV 60
>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB
{Pectobacterium carotovorum [TaxId: 554]}
Length = 230
Score = 45.2 bits (105), Expect = 3e-06
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCAG 99
+ + ++ P N + TL + A+ D+ VR V++ + F AG
Sbjct: 9 EVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAG 61
>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 249
Score = 41.7 bits (96), Expect = 5e-05
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 47 GIVELCMNRPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFC 97
G+ + P N+L+ + E++ ++E + D+ R V+L S VF
Sbjct: 13 GVAVMKFKNP-PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFS 62
>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human
(Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 41.0 bits (94), Expect = 1e-04
Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 44 ERPGIVELCMN-RPQARNALNATLVEEILTAVEAIRGDEEVRCVLLRSLVKDVFCA 98
+ G ++ ++ R +NALN +++E++ A+ + D + + VL + C
Sbjct: 8 KEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCG 62
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 527
Score = 29.4 bits (65), Expect = 0.72
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 14/68 (20%)
Query: 35 TQIIYHNSPERPGIVELCMNRPQARNALNATLVEEILTA-------VEAIRGDEEVRCVL 87
I Y + IV +NRP TL E+I+ E RG +R
Sbjct: 13 EYIRYDLLEKNIDIVRKRLNRPL-------TLSEKIVYGHLDDPANQEIERGKTYLRLRP 65
Query: 88 LRSLVKDV 95
R ++D
Sbjct: 66 DRVAMQDA 73
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 27.2 bits (59), Expect = 2.2
Identities = 10/81 (12%), Positives = 19/81 (23%), Gaps = 3/81 (3%)
Query: 271 IELYDEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADGTHSWLAPIL 330
I+ F D P T +N Y + + + + G + PI
Sbjct: 13 IKT---FDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIK 69
Query: 331 PQEMFKANGFVLVILKEMWME 351
+ +
Sbjct: 70 NEANNGLKNTRGTLAMARTQA 90
>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A,
NIA) {Tobacco etch virus, TEV [TaxId: 12227]}
Length = 219
Score = 27.4 bits (60), Expect = 2.6
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 211 YMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYNASIEMSYCGFSLLNTWGDRYYLGLNG 270
+ T ++ + ++V S S I W + + CG L++T D + +G++
Sbjct: 108 CLVTTNFQTKSMSSMVSDTSCTFPSSDGIFWKHWIQTKDGQCGSPLVST-RDGFIVGIHS 166
Query: 271 I 271
Sbjct: 167 A 167
>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria
meningitidis [TaxId: 487]}
Length = 225
Score = 27.0 bits (58), Expect = 2.8
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 171 LAIIPGAGGTQRLPR-----IVGIPLAA-LYEDLLNNDCMSSLDTRYMWCTPYR 218
+A+I ++ LP + GI L +++ C +
Sbjct: 6 IAVILARQNSKGLPLKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGLIAE 59
>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
Length = 157
Score = 26.5 bits (58), Expect = 3.8
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 12/100 (12%)
Query: 108 LNEDQIRSFVSTLRYMT-----CQLESIP--VPVLAVLDGSAYGGGLEMALACDIRVAAS 160
L + + +R ++P V+ VLD + G L D+ A
Sbjct: 32 LAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLDVCSAFV 91
Query: 161 NVRMGLVETKLAIIPGAGGTQRLPRIVGIPLAALYEDLLN 200
+ + LA G G + P +V ++Y+++
Sbjct: 92 ERGEAMPKI-LAGRYGLGSKEFSPAMV----KSVYDNMSG 126
>d1xnta_ b.18.1.8 (A:) N-terminal domain of xrcc1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 151
Score = 25.9 bits (57), Expect = 4.6
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 196 EDLLNNDCMSSLDTRYMWCTPYRRGLVVTLVIKFSQPVHISALIVWNYN-ASIEM 249
E+LL D T W +++V++ + I ++ + N A +E+
Sbjct: 22 ENLLKAD------TYRKWRAAKAGEKTISVVLQLEKEEQIHSVDIGNDGSAFVEV 70
>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 228
Score = 26.5 bits (57), Expect = 4.7
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 5/26 (19%)
Query: 171 LAIIPGAGGTQRLPR-----IVGIPL 191
A++ GG++ +P + G+PL
Sbjct: 5 AALVLARGGSKGIPLKNIKRLAGVPL 30
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6
{Malassezia sympodialis [TaxId: 76777]}
Length = 162
Score = 26.2 bits (57), Expect = 5.1
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 271 IELYDEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDG 314
+L F D++P TA N A G ++I
Sbjct: 20 FKL---FDDVVPKTAANFRAL---CTGEKGFGYAGSHFHRVIPD 57
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 171
Score = 25.6 bits (55), Expect = 6.8
Identities = 15/88 (17%), Positives = 20/88 (22%), Gaps = 4/88 (4%)
Query: 271 IELYDEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADGTHSWLAPIL 330
I L FG+ P T N G DG +
Sbjct: 17 IAL---FGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGD 73
Query: 331 PQEMFKANGFVLVILKEMWMEIKFTAVG 358
P + G E E++F
Sbjct: 74 PTGTGR-GGPGYKFADEFHPELQFDKPY 100
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 159
Score = 25.6 bits (55), Expect = 7.3
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 4/70 (5%)
Query: 271 IELYDEFGDLIPLTAENIFAYPAGVHILHGMENDARTCDKLIDGVNNIADGTHSWLAPIL 330
IE+ F + P T EN A A + + + ++ + G
Sbjct: 14 IEV---FCERTPKTCENFLALCASNYYNGCIFHR-NIKGFMVQTGDPTGTGRGGNSIWGK 69
Query: 331 PQEMFKANGF 340
E +
Sbjct: 70 KFEDEYSEYL 79
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.425
Gapped
Lambda K H
0.267 0.0447 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,379,342
Number of extensions: 64915
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 27
Length of query: 358
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 272
Effective length of database: 1,226,816
Effective search space: 333693952
Effective search space used: 333693952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.9 bits)