Query psy5044
Match_columns 219
No_of_seqs 158 out of 729
Neff 4.8
Searched_HMMs 46136
Date Sat Aug 17 00:19:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2931|consensus 100.0 3.3E-42 7.1E-47 311.0 13.4 144 1-218 4-149 (326)
2 PF03096 Ndr: Ndr family; Int 100.0 6.4E-38 1.4E-42 281.8 11.7 124 28-218 1-126 (283)
3 PLN02824 hydrolase, alpha/beta 99.9 3.1E-21 6.8E-26 166.8 14.2 121 23-218 5-129 (294)
4 PRK00870 haloalkane dehalogena 99.9 1.4E-20 3E-25 164.0 15.3 127 17-218 10-142 (302)
5 TIGR02240 PHA_depoly_arom poly 99.9 8E-21 1.7E-25 163.2 13.2 112 30-218 6-118 (276)
6 PRK03592 haloalkane dehalogena 99.8 3.4E-20 7.4E-25 160.4 14.9 117 23-218 4-120 (295)
7 TIGR03056 bchO_mg_che_rel puta 99.8 1.7E-19 3.7E-24 150.9 13.4 115 28-218 8-122 (278)
8 PRK03204 haloalkane dehalogena 99.8 4.9E-19 1.1E-23 154.9 14.4 118 23-218 11-128 (286)
9 PRK06489 hypothetical protein; 99.8 3.3E-19 7.2E-24 160.8 13.1 74 145-218 103-181 (360)
10 PLN02679 hydrolase, alpha/beta 99.8 6.2E-19 1.3E-23 159.8 14.2 112 31-218 66-183 (360)
11 TIGR03611 RutD pyrimidine util 99.8 5.9E-19 1.3E-23 144.0 12.2 105 38-218 1-107 (257)
12 PRK10673 acyl-CoA esterase; Pr 99.8 8.2E-19 1.8E-23 146.5 12.4 103 38-218 3-108 (255)
13 TIGR01250 pro_imino_pep_2 prol 99.8 2.1E-18 4.6E-23 142.1 13.7 70 148-218 54-123 (288)
14 PLN02965 Probable pheophorbida 99.8 6.6E-19 1.4E-23 150.0 10.6 65 151-218 34-99 (255)
15 TIGR02427 protocat_pcaD 3-oxoa 99.8 1.6E-18 3.4E-23 139.4 11.7 104 38-218 2-106 (251)
16 TIGR03343 biphenyl_bphD 2-hydr 99.8 4.7E-18 1E-22 144.2 13.2 69 147-218 60-128 (282)
17 PRK08775 homoserine O-acetyltr 99.8 1.4E-18 3E-23 155.6 10.4 67 146-218 98-165 (343)
18 PRK11126 2-succinyl-6-hydroxy- 99.8 3.1E-18 6.8E-23 142.3 11.5 66 148-218 28-94 (242)
19 PRK07581 hypothetical protein; 99.8 1.6E-18 3.5E-23 153.9 9.8 71 147-218 71-151 (339)
20 PLN03087 BODYGUARD 1 domain co 99.8 9.1E-18 2E-22 160.6 15.0 121 27-218 177-301 (481)
21 PLN03084 alpha/beta hydrolase 99.7 1.8E-17 3.8E-22 154.0 14.4 116 29-218 107-224 (383)
22 PRK10349 carboxylesterase BioH 99.7 7.6E-18 1.6E-22 142.4 10.8 98 38-218 4-101 (256)
23 PLN02578 hydrolase 99.7 2.6E-17 5.7E-22 148.5 14.0 109 31-218 71-179 (354)
24 PLN02385 hydrolase; alpha/beta 99.7 2.8E-17 6E-22 147.3 13.7 118 26-218 61-189 (349)
25 TIGR01392 homoserO_Ac_trn homo 99.7 1.9E-17 4E-22 148.8 11.5 74 145-218 70-154 (351)
26 KOG4178|consensus 99.7 7.1E-17 1.5E-21 147.9 13.3 120 24-218 20-140 (322)
27 PF12697 Abhydrolase_6: Alpha/ 99.7 5.3E-17 1.1E-21 127.9 10.6 67 150-218 27-93 (228)
28 PRK05855 short chain dehydroge 99.7 1.7E-16 3.6E-21 147.6 13.6 109 28-211 5-114 (582)
29 TIGR01249 pro_imino_pep_1 prol 99.7 2.1E-16 4.6E-21 139.0 13.4 70 147-218 53-122 (306)
30 PLN02298 hydrolase, alpha/beta 99.7 2E-16 4.3E-21 139.8 12.9 68 148-218 88-161 (330)
31 PRK00175 metX homoserine O-ace 99.7 1.3E-16 2.9E-21 145.8 11.6 74 145-218 89-174 (379)
32 PRK14875 acetoin dehydrogenase 99.7 4E-16 8.6E-21 137.9 12.8 113 29-218 112-224 (371)
33 PLN02211 methyl indole-3-aceta 99.7 3.4E-16 7.3E-21 137.1 11.4 67 149-218 47-114 (273)
34 PRK10749 lysophospholipase L2; 99.7 1.3E-15 2.7E-20 136.1 15.2 71 148-218 82-158 (330)
35 TIGR01738 bioH putative pimelo 99.7 2.9E-16 6.4E-21 126.1 9.5 61 149-218 32-92 (245)
36 TIGR03695 menH_SHCHC 2-succiny 99.7 1.2E-15 2.5E-20 122.0 11.0 69 148-218 28-97 (251)
37 PLN02894 hydrolase, alpha/beta 99.6 3E-15 6.5E-20 138.8 12.0 103 40-218 97-203 (402)
38 PLN02980 2-oxoglutarate decarb 99.6 4.3E-15 9.2E-20 158.7 14.4 126 19-218 1337-1472(1655)
39 KOG4409|consensus 99.6 3.5E-15 7.5E-20 138.2 10.6 100 45-218 87-187 (365)
40 PHA02857 monoglyceride lipase; 99.6 2.5E-14 5.4E-19 122.2 13.2 67 149-218 54-124 (276)
41 KOG1454|consensus 99.6 1.8E-14 3.9E-19 131.4 11.9 123 23-218 22-155 (326)
42 PF00561 Abhydrolase_1: alpha/ 99.5 3.1E-14 6.8E-19 115.0 8.0 69 148-218 1-71 (230)
43 TIGR03101 hydr2_PEP hydrolase, 99.5 1.2E-12 2.5E-17 116.8 14.1 67 148-218 57-126 (266)
44 PRK06765 homoserine O-acetyltr 99.4 1E-12 2.2E-17 122.5 11.0 73 146-218 98-188 (389)
45 PLN02511 hydrolase 99.4 4.6E-12 1E-16 116.9 14.8 66 146-215 128-197 (388)
46 PRK05077 frsA fermentation/res 99.4 4.1E-12 8.8E-17 118.9 14.4 122 21-218 163-292 (414)
47 COG0596 MhpC Predicted hydrola 99.4 6.5E-12 1.4E-16 98.0 11.4 65 148-218 51-115 (282)
48 PRK11071 esterase YqiA; Provis 99.4 2.1E-12 4.6E-17 108.4 9.2 54 147-215 32-85 (190)
49 PLN02872 triacylglycerol lipas 99.4 5.9E-12 1.3E-16 117.8 12.1 125 21-215 39-183 (395)
50 KOG2564|consensus 99.4 5.5E-12 1.2E-16 115.0 11.4 111 27-211 49-166 (343)
51 PRK10985 putative hydrolase; P 99.3 2.6E-11 5.7E-16 108.3 14.5 68 148-215 88-155 (324)
52 TIGR03230 lipo_lipase lipoprot 99.3 1.2E-11 2.5E-16 117.9 11.8 67 148-218 74-146 (442)
53 COG2267 PldB Lysophospholipase 99.3 6.9E-11 1.5E-15 106.4 12.6 69 148-218 62-134 (298)
54 TIGR03100 hydr1_PEP hydrolase, 99.3 1.4E-10 3E-15 101.6 14.0 64 148-218 58-126 (274)
55 PLN02652 hydrolase; alpha/beta 99.3 9E-11 2E-15 109.5 13.5 67 148-218 164-237 (395)
56 PRK10566 esterase; Provisional 99.2 1.7E-10 3.7E-15 97.1 10.2 67 148-215 55-131 (249)
57 cd00707 Pancreat_lipase_like P 99.2 7.1E-11 1.5E-15 104.8 8.1 66 149-218 68-139 (275)
58 TIGR01607 PST-A Plasmodium sub 99.2 1.6E-10 3.5E-15 104.3 10.2 71 143-214 69-165 (332)
59 TIGR02821 fghA_ester_D S-formy 99.2 5.4E-10 1.2E-14 97.9 13.1 44 175-218 119-165 (275)
60 TIGR01836 PHA_synth_III_C poly 99.1 3.3E-10 7.2E-15 102.1 9.4 65 147-218 94-163 (350)
61 TIGR03502 lipase_Pla1_cef extr 99.0 3.4E-09 7.3E-14 107.3 12.2 68 149-216 478-580 (792)
62 TIGR00976 /NonD putative hydro 99.0 2.3E-09 4.9E-14 103.1 9.8 68 146-218 52-124 (550)
63 TIGR01840 esterase_phb esteras 99.0 7.8E-09 1.7E-13 86.9 11.3 71 148-218 44-122 (212)
64 PLN02442 S-formylglutathione h 98.9 1.7E-08 3.7E-13 89.3 13.4 45 174-218 126-170 (283)
65 PLN00021 chlorophyllase 98.9 8.8E-09 1.9E-13 93.7 11.2 63 149-215 81-150 (313)
66 KOG1455|consensus 98.9 1.3E-08 2.9E-13 93.2 12.1 68 148-218 83-156 (313)
67 PRK13604 luxD acyl transferase 98.9 2.9E-08 6.2E-13 91.0 12.4 113 23-212 6-129 (307)
68 COG2021 MET2 Homoserine acetyl 98.9 1.3E-08 2.8E-13 95.2 9.9 73 146-218 91-174 (368)
69 PLN02733 phosphatidylcholine-s 98.8 1.1E-08 2.4E-13 97.6 8.8 83 133-217 105-188 (440)
70 KOG2382|consensus 98.8 1E-08 2.3E-13 94.3 8.1 64 149-217 82-150 (315)
71 TIGR01838 PHA_synth_I poly(R)- 98.8 5.2E-08 1.1E-12 94.9 11.2 70 147-218 220-294 (532)
72 PRK07868 acyl-CoA synthetase; 98.8 4.4E-08 9.5E-13 100.4 10.8 65 149-218 101-169 (994)
73 PF12695 Abhydrolase_5: Alpha/ 98.7 5.4E-08 1.2E-12 74.6 8.6 60 149-218 28-87 (145)
74 PRK10162 acetyl esterase; Prov 98.7 1.5E-07 3.2E-12 84.7 12.5 111 25-212 56-175 (318)
75 PRK10252 entF enterobactin syn 98.7 6.2E-08 1.3E-12 99.5 10.7 64 148-217 1095-1162(1296)
76 PF00975 Thioesterase: Thioest 98.6 2.9E-07 6.3E-12 76.6 10.6 57 149-211 29-86 (229)
77 PRK11460 putative hydrolase; P 98.6 7.3E-07 1.6E-11 76.9 11.1 44 175-218 85-130 (232)
78 KOG2984|consensus 98.5 8.9E-08 1.9E-12 84.8 4.9 123 24-218 19-141 (277)
79 COG1647 Esterase/lipase [Gener 98.4 8.9E-07 1.9E-11 78.7 8.4 59 151-213 46-107 (243)
80 PF00326 Peptidase_S9: Prolyl 98.2 2E-06 4.2E-11 71.7 5.7 82 136-218 3-91 (213)
81 COG3208 GrsT Predicted thioest 98.2 2.2E-06 4.7E-11 76.6 6.2 70 137-212 25-95 (244)
82 PF06342 DUF1057: Alpha/beta h 98.2 1.4E-05 3.1E-10 73.1 11.3 62 149-213 64-126 (297)
83 PF10230 DUF2305: Uncharacteri 98.2 6.3E-06 1.4E-10 73.2 8.8 95 120-217 6-113 (266)
84 PF06500 DUF1100: Alpha/beta h 98.2 8.6E-06 1.9E-10 77.6 10.1 68 147-218 218-288 (411)
85 smart00824 PKS_TE Thioesterase 98.2 1.6E-05 3.5E-10 63.3 9.5 71 136-212 13-85 (212)
86 PF07819 PGAP1: PGAP1-like pro 98.1 1.5E-05 3.3E-10 69.3 9.6 60 147-213 39-107 (225)
87 PF12146 Hydrolase_4: Putative 98.1 1.4E-05 3.1E-10 59.2 8.1 33 151-186 47-79 (79)
88 COG0400 Predicted esterase [Ge 98.1 2.1E-05 4.5E-10 68.4 9.6 47 173-219 79-127 (207)
89 PF10503 Esterase_phd: Esteras 98.1 2.1E-05 4.6E-10 68.9 8.7 44 175-218 79-124 (220)
90 COG0412 Dienelactone hydrolase 98.0 3.5E-05 7.6E-10 67.5 9.1 43 175-218 90-138 (236)
91 COG0429 Predicted hydrolase of 98.0 0.00012 2.6E-09 68.4 12.4 118 26-214 49-171 (345)
92 PF02230 Abhydrolase_2: Phosph 97.9 3.9E-05 8.5E-10 64.8 7.7 46 173-218 82-132 (216)
93 PF01674 Lipase_2: Lipase (cla 97.9 2.4E-05 5.1E-10 68.6 5.8 38 173-211 58-95 (219)
94 PF06028 DUF915: Alpha/beta hy 97.8 2.6E-05 5.7E-10 69.7 5.5 42 173-214 81-126 (255)
95 PTZ00472 serine carboxypeptida 97.8 0.00016 3.4E-09 69.4 10.8 71 133-211 113-191 (462)
96 KOG2565|consensus 97.8 0.00012 2.7E-09 69.6 9.3 69 147-218 188-256 (469)
97 COG1506 DAP2 Dipeptidyl aminop 97.8 0.00024 5.2E-09 70.0 11.7 66 150-217 426-498 (620)
98 PF00756 Esterase: Putative es 97.7 9E-05 1.9E-09 62.8 7.0 45 174-218 95-142 (251)
99 PF03096 Ndr: Ndr family; Int 97.7 1.5E-05 3.2E-10 72.7 2.1 42 121-162 29-70 (283)
100 KOG2931|consensus 97.7 1.7E-05 3.6E-10 73.1 2.5 43 120-162 51-93 (326)
101 KOG1838|consensus 97.7 0.00077 1.7E-08 64.4 13.3 73 144-216 151-223 (409)
102 COG3319 Thioesterase domains o 97.7 0.00025 5.5E-09 63.7 9.0 57 149-211 28-85 (257)
103 PRK10115 protease 2; Provision 97.6 0.00053 1.1E-08 68.7 11.6 70 148-218 475-551 (686)
104 PF05728 UPF0227: Uncharacteri 97.6 0.0004 8.7E-09 59.3 8.5 42 173-214 41-82 (187)
105 PF05990 DUF900: Alpha/beta hy 97.5 0.00027 5.9E-09 61.8 7.4 38 173-210 75-112 (233)
106 PRK10439 enterobactin/ferric e 97.5 0.00089 1.9E-08 63.4 11.2 45 174-218 266-315 (411)
107 PF05448 AXE1: Acetyl xylan es 97.5 0.00093 2E-08 61.3 10.2 115 45-218 80-201 (320)
108 KOG1552|consensus 97.4 0.0017 3.6E-08 58.8 10.8 62 148-213 89-152 (258)
109 PF12740 Chlorophyllase2: Chlo 97.4 0.00042 9.1E-09 62.5 6.9 64 151-218 48-123 (259)
110 TIGR01839 PHA_synth_II poly(R) 97.4 0.00054 1.2E-08 67.7 7.9 73 139-218 237-320 (560)
111 PF01738 DLH: Dienelactone hyd 97.4 0.00036 7.7E-09 58.5 5.5 43 175-218 76-124 (218)
112 KOG2624|consensus 97.3 0.0011 2.4E-08 63.1 8.8 128 19-214 41-184 (403)
113 TIGR01849 PHB_depoly_PhaZ poly 97.3 0.0039 8.5E-08 59.5 12.4 66 148-218 130-200 (406)
114 COG2945 Predicted hydrolase of 97.2 0.0025 5.3E-08 56.0 9.5 66 147-215 60-127 (210)
115 KOG4667|consensus 97.2 0.00071 1.5E-08 60.7 5.9 106 105-214 19-128 (269)
116 PF00151 Lipase: Lipase; Inte 97.2 0.00032 6.9E-09 64.7 3.3 40 175-214 128-173 (331)
117 PF07224 Chlorophyllase: Chlor 97.1 0.0011 2.4E-08 60.7 6.6 58 151-213 77-142 (307)
118 PF05057 DUF676: Putative seri 97.1 0.0011 2.3E-08 57.0 5.7 36 175-211 60-97 (217)
119 PF05577 Peptidase_S28: Serine 97.0 0.003 6.5E-08 59.0 8.8 70 149-218 61-140 (434)
120 KOG1515|consensus 97.0 0.0086 1.9E-07 55.8 11.6 57 149-212 125-187 (336)
121 KOG4391|consensus 97.0 0.00094 2E-08 60.2 5.0 63 149-218 108-176 (300)
122 PF01764 Lipase_3: Lipase (cla 97.0 0.0022 4.7E-08 49.8 6.0 39 174-212 47-85 (140)
123 PF12715 Abhydrolase_7: Abhydr 96.9 0.0034 7.4E-08 59.7 8.3 74 144-218 157-252 (390)
124 PF02129 Peptidase_S15: X-Pro 96.7 0.0071 1.5E-07 52.9 7.6 69 145-218 55-128 (272)
125 COG1075 LipA Predicted acetylt 96.6 0.0046 9.9E-08 56.9 6.3 61 151-217 93-155 (336)
126 PF07859 Abhydrolase_3: alpha/ 96.6 0.0047 1E-07 50.8 5.7 70 138-214 18-94 (211)
127 KOG2112|consensus 96.6 0.0031 6.7E-08 55.4 4.8 46 173-218 70-120 (206)
128 PRK05371 x-prolyl-dipeptidyl a 96.5 0.0078 1.7E-07 61.4 8.0 70 144-218 276-365 (767)
129 cd00741 Lipase Lipase. Lipase 96.4 0.0052 1.1E-07 49.1 4.9 42 174-215 7-52 (153)
130 COG0657 Aes Esterase/lipase [L 96.4 0.019 4.1E-07 50.9 8.8 62 146-214 109-175 (312)
131 cd00312 Esterase_lipase Estera 96.4 0.033 7.2E-07 52.4 10.7 39 173-211 156-196 (493)
132 COG3509 LpqC Poly(3-hydroxybut 96.2 0.056 1.2E-06 50.2 10.9 46 173-218 124-171 (312)
133 PF04083 Abhydro_lipase: Parti 96.2 0.01 2.3E-07 42.7 4.9 43 21-63 7-58 (63)
134 PF06821 Ser_hydrolase: Serine 96.2 0.025 5.5E-07 47.3 8.0 45 173-218 38-83 (171)
135 COG4757 Predicted alpha/beta h 96.2 0.0057 1.2E-07 55.4 4.1 66 144-209 54-123 (281)
136 PF05677 DUF818: Chlamydia CHL 95.9 0.03 6.5E-07 52.9 7.8 78 127-212 145-236 (365)
137 COG3458 Acetyl esterase (deace 95.9 0.034 7.5E-07 51.4 8.0 26 187-212 172-197 (321)
138 KOG1553|consensus 95.7 0.024 5.1E-07 54.3 6.2 78 135-215 255-335 (517)
139 KOG2100|consensus 95.7 0.079 1.7E-06 54.1 10.4 81 137-217 548-634 (755)
140 COG4188 Predicted dienelactone 95.7 0.045 9.8E-07 51.8 7.9 27 186-212 154-180 (365)
141 PF03403 PAF-AH_p_II: Platelet 95.6 0.0066 1.4E-07 56.9 2.1 33 184-217 221-253 (379)
142 COG3150 Predicted esterase [Ge 95.6 0.023 4.9E-07 49.2 5.1 58 151-213 24-81 (191)
143 PF03959 FSH1: Serine hydrolas 95.5 0.037 8.1E-07 47.1 6.2 40 172-212 84-123 (212)
144 cd00519 Lipase_3 Lipase (class 95.3 0.034 7.3E-07 47.3 5.3 33 180-212 117-149 (229)
145 COG4782 Uncharacterized protei 95.1 0.043 9.2E-07 52.1 5.8 37 173-209 173-209 (377)
146 COG4814 Uncharacterized protei 95.1 0.027 5.8E-07 51.5 4.3 41 173-213 114-158 (288)
147 COG0627 Predicted esterase [Ge 95.1 0.022 4.7E-07 52.7 3.6 42 177-218 133-179 (316)
148 KOG2281|consensus 95.0 0.03 6.4E-07 56.9 4.5 74 144-217 672-753 (867)
149 KOG2183|consensus 94.4 0.082 1.8E-06 51.3 5.7 95 121-218 85-194 (492)
150 PF02273 Acyl_transf_2: Acyl t 94.3 0.66 1.4E-05 42.6 11.1 59 150-211 60-121 (294)
151 KOG4627|consensus 94.2 0.29 6.3E-06 44.1 8.5 45 173-217 117-163 (270)
152 PRK04940 hypothetical protein; 94.0 0.096 2.1E-06 45.1 5.0 23 191-213 60-82 (180)
153 PF02450 LCAT: Lecithin:choles 94.0 0.079 1.7E-06 49.7 4.7 40 175-214 100-142 (389)
154 PF09752 DUF2048: Uncharacteri 93.9 0.16 3.4E-06 47.9 6.6 75 144-218 118-202 (348)
155 COG3243 PhaC Poly(3-hydroxyalk 93.8 0.059 1.3E-06 52.1 3.6 73 144-218 136-209 (445)
156 KOG3975|consensus 93.7 0.37 8.1E-06 44.3 8.3 90 120-211 33-130 (301)
157 PF10340 DUF2424: Protein of u 93.5 0.39 8.4E-06 45.7 8.5 58 149-210 156-214 (374)
158 PLN02454 triacylglycerol lipas 93.3 0.16 3.4E-06 49.0 5.5 37 175-211 210-248 (414)
159 PLN02571 triacylglycerol lipas 93.2 0.14 3.1E-06 49.2 5.2 37 175-211 208-246 (413)
160 PF11187 DUF2974: Protein of u 93.2 0.13 2.8E-06 45.1 4.5 39 175-214 69-107 (224)
161 PF00450 Peptidase_S10: Serine 93.2 0.4 8.7E-06 43.5 7.8 77 127-210 71-155 (415)
162 PLN02633 palmitoyl protein thi 93.2 0.26 5.6E-06 45.9 6.6 41 173-214 74-117 (314)
163 PF06057 VirJ: Bacterial virul 93.0 0.12 2.6E-06 45.1 3.8 61 148-217 30-94 (192)
164 PLN00413 triacylglycerol lipas 92.4 0.23 5E-06 48.7 5.4 36 175-210 268-303 (479)
165 KOG2369|consensus 92.3 0.17 3.7E-06 49.4 4.3 43 173-215 164-206 (473)
166 PLN02408 phospholipase A1 92.2 0.25 5.3E-06 46.9 5.1 37 175-211 182-220 (365)
167 PLN02162 triacylglycerol lipas 91.7 0.31 6.8E-06 47.7 5.4 36 175-210 262-297 (475)
168 PF03583 LIP: Secretory lipase 91.5 0.49 1.1E-05 42.6 6.1 70 138-210 16-90 (290)
169 PF11144 DUF2920: Protein of u 91.4 2.2 4.8E-05 41.1 10.7 168 37-218 21-211 (403)
170 KOG3724|consensus 91.4 0.13 2.8E-06 53.3 2.5 60 144-210 129-201 (973)
171 COG2936 Predicted acyl esteras 91.4 1.2 2.6E-05 44.5 9.2 71 144-218 77-151 (563)
172 COG3571 Predicted hydrolase of 91.4 0.8 1.7E-05 40.0 7.0 36 175-210 73-108 (213)
173 PLN02310 triacylglycerol lipas 90.3 0.45 9.7E-06 45.7 5.0 37 175-211 189-229 (405)
174 PLN02934 triacylglycerol lipas 90.3 0.44 9.5E-06 47.1 4.9 36 175-210 305-340 (515)
175 PLN02753 triacylglycerol lipas 90.1 0.49 1.1E-05 46.9 5.1 37 175-211 291-332 (531)
176 PF08538 DUF1749: Protein of u 90.0 0.32 6.9E-06 45.1 3.6 41 173-213 82-130 (303)
177 PLN02324 triacylglycerol lipas 89.9 0.53 1.1E-05 45.4 5.0 37 175-211 197-235 (415)
178 PLN02802 triacylglycerol lipas 88.7 0.69 1.5E-05 45.7 5.0 36 176-211 313-350 (509)
179 COG3545 Predicted esterase of 88.4 0.99 2.1E-05 39.2 5.2 46 172-218 41-86 (181)
180 PLN03037 lipase class 3 family 88.4 0.76 1.7E-05 45.6 5.1 37 175-211 298-338 (525)
181 PLN02719 triacylglycerol lipas 88.2 0.82 1.8E-05 45.3 5.1 37 175-211 277-318 (518)
182 COG4099 Predicted peptidase [G 87.8 0.66 1.4E-05 43.8 4.0 45 174-218 249-296 (387)
183 PLN02761 lipase class 3 family 87.7 0.89 1.9E-05 45.1 5.0 36 175-210 272-313 (527)
184 PF11288 DUF3089: Protein of u 87.4 1.4 3E-05 38.7 5.6 40 173-212 76-116 (207)
185 PLN02517 phosphatidylcholine-s 87.0 0.89 1.9E-05 46.0 4.7 36 175-210 193-232 (642)
186 COG2819 Predicted hydrolase of 86.9 0.98 2.1E-05 41.2 4.5 44 174-217 117-163 (264)
187 COG2382 Fes Enterochelin ester 85.7 0.43 9.3E-06 44.2 1.6 45 173-217 154-203 (299)
188 KOG4569|consensus 85.2 1.5 3.3E-05 40.5 5.0 36 175-210 155-190 (336)
189 cd07225 Pat_PNPLA6_PNPLA7 Pata 85.0 1.2 2.6E-05 40.8 4.1 33 180-212 32-64 (306)
190 KOG3101|consensus 85.0 0.14 3E-06 46.3 -1.9 46 173-218 118-168 (283)
191 PRK10279 hypothetical protein; 84.7 0.92 2E-05 41.6 3.2 33 181-213 23-55 (300)
192 PLN02847 triacylglycerol lipas 83.9 1.9 4E-05 43.7 5.2 39 173-211 225-271 (633)
193 COG1752 RssA Predicted esteras 83.7 1.4 3E-05 39.7 4.0 34 181-214 29-62 (306)
194 cd07227 Pat_Fungal_NTE1 Fungal 83.2 1.6 3.5E-05 39.4 4.2 33 180-212 27-59 (269)
195 PF05277 DUF726: Protein of un 83.2 1.6 3.5E-05 41.1 4.3 74 129-215 170-244 (345)
196 COG2272 PnbA Carboxylesterase 82.8 3 6.4E-05 41.2 6.1 32 178-209 165-198 (491)
197 smart00827 PKS_AT Acyl transfe 82.0 1.7 3.7E-05 38.0 3.8 36 175-210 66-101 (298)
198 PLN02213 sinapoylglucose-malat 81.6 5.4 0.00012 36.3 7.0 60 149-210 3-70 (319)
199 PF01083 Cutinase: Cutinase; 81.4 4.9 0.00011 33.8 6.2 37 175-211 65-101 (179)
200 TIGR00128 fabD malonyl CoA-acy 79.7 2.2 4.7E-05 37.2 3.6 33 178-210 69-102 (290)
201 KOG2541|consensus 79.5 3.3 7.2E-05 38.3 4.8 42 173-214 72-115 (296)
202 TIGR03131 malonate_mdcH malona 79.1 2.5 5.4E-05 37.3 3.9 37 174-210 59-95 (295)
203 PF06259 Abhydrolase_8: Alpha/ 78.9 4.2 9E-05 34.8 5.0 42 175-216 88-134 (177)
204 KOG2182|consensus 78.3 9.4 0.0002 37.9 7.8 69 150-218 121-199 (514)
205 PF00698 Acyl_transf_1: Acyl t 78.2 1.3 2.8E-05 39.8 1.8 33 177-209 70-102 (318)
206 PLN02209 serine carboxypeptida 76.1 10 0.00023 36.5 7.4 74 129-210 105-186 (437)
207 PLN02606 palmitoyl-protein thi 75.5 4.5 9.7E-05 37.7 4.6 41 173-214 75-118 (306)
208 cd01714 ETF_beta The electron 71.6 10 0.00022 32.4 5.6 52 149-212 79-134 (202)
209 cd07230 Pat_TGL4-5_like Triacy 70.1 4 8.7E-05 39.2 3.0 37 180-216 90-126 (421)
210 PF12048 DUF3530: Protein of u 69.1 12 0.00026 34.2 5.8 33 182-214 184-216 (310)
211 KOG2029|consensus 68.6 6.4 0.00014 40.1 4.1 39 173-211 505-546 (697)
212 KOG4372|consensus 68.0 2 4.3E-05 41.5 0.5 32 175-206 134-165 (405)
213 PF08237 PE-PPE: PE-PPE domain 67.3 12 0.00026 32.9 5.2 40 173-212 28-69 (225)
214 cd07231 Pat_SDP1-like Sugar-De 66.5 5.1 0.00011 37.6 2.8 35 181-215 86-120 (323)
215 PF11339 DUF3141: Protein of u 66.5 13 0.00028 37.5 5.7 45 173-217 117-166 (581)
216 TIGR02816 pfaB_fam PfaB family 66.3 6.4 0.00014 39.2 3.6 33 180-212 253-286 (538)
217 cd07232 Pat_PLPL Patain-like p 66.3 5.4 0.00012 38.1 3.0 36 181-216 85-120 (407)
218 KOG4840|consensus 65.5 7.3 0.00016 35.7 3.5 38 172-209 84-125 (299)
219 KOG1516|consensus 65.4 17 0.00037 34.8 6.2 37 174-210 176-214 (545)
220 COG3946 VirJ Type IV secretory 65.2 8.4 0.00018 37.7 4.1 79 128-215 258-350 (456)
221 KOG1551|consensus 65.0 4 8.6E-05 38.2 1.8 31 187-217 191-221 (371)
222 cd07229 Pat_TGL3_like Triacylg 64.9 6.2 0.00013 37.8 3.1 35 181-215 101-135 (391)
223 PLN03016 sinapoylglucose-malat 64.2 16 0.00035 35.2 5.8 73 130-210 104-184 (433)
224 PF00135 COesterase: Carboxyle 63.6 9.3 0.0002 35.6 4.0 35 177-211 192-228 (535)
225 cd01819 Patatin_and_cPLA2 Pata 61.3 13 0.00028 30.2 4.0 29 181-209 16-46 (155)
226 cd07220 Pat_PNPLA2 Patatin-lik 60.6 12 0.00026 33.4 4.0 33 181-213 22-58 (249)
227 cd07206 Pat_TGL3-4-5_SDP1 Tria 59.9 10 0.00022 35.1 3.5 34 179-213 86-119 (298)
228 KOG2237|consensus 59.2 37 0.0008 35.1 7.5 67 151-218 503-576 (712)
229 PF11713 Peptidase_C80: Peptid 57.8 4.2 9.1E-05 34.0 0.6 57 141-203 50-116 (157)
230 PF05576 Peptidase_S37: PS-10 57.3 3.9 8.4E-05 39.9 0.3 68 151-219 92-162 (448)
231 KOG1202|consensus 54.8 20 0.00044 39.9 5.0 39 173-211 2163-2202(2376)
232 KOG3043|consensus 53.9 20 0.00043 32.5 4.2 33 181-213 109-142 (242)
233 COG2939 Carboxypeptidase C (ca 51.9 34 0.00074 34.0 5.8 93 108-210 115-217 (498)
234 PF02089 Palm_thioest: Palmito 51.6 32 0.0007 31.7 5.3 41 173-214 60-103 (279)
235 TIGR03712 acc_sec_asp2 accesso 51.4 13 0.00028 37.0 2.8 38 175-212 339-378 (511)
236 COG4667 Predicted esterase of 48.3 27 0.00059 32.4 4.3 40 178-217 27-66 (292)
237 cd07212 Pat_PNPLA9 Patatin-lik 46.9 15 0.00033 33.6 2.5 19 194-212 35-53 (312)
238 PF04301 DUF452: Protein of un 45.9 21 0.00046 31.4 3.1 23 189-211 55-77 (213)
239 COG1770 PtrB Protease II [Amin 45.5 29 0.00063 35.7 4.3 46 172-218 506-554 (682)
240 PRK04148 hypothetical protein; 44.2 29 0.00064 28.5 3.5 38 174-211 1-38 (134)
241 COG5153 CVT17 Putative lipase 44.1 31 0.00068 32.8 4.0 34 179-212 264-297 (425)
242 KOG4540|consensus 44.1 31 0.00068 32.8 4.0 34 179-212 264-297 (425)
243 PLN03229 acetyl-coenzyme A car 43.5 50 0.0011 34.5 5.7 18 46-63 197-214 (762)
244 COG0331 FabD (acyl-carrier-pro 42.6 31 0.00066 32.0 3.7 39 172-210 64-104 (310)
245 COG4947 Uncharacterized protei 42.3 22 0.00049 31.4 2.6 37 181-217 91-127 (227)
246 cd07211 Pat_PNPLA8 Patatin-lik 42.0 33 0.00071 30.8 3.8 32 179-210 25-60 (308)
247 PRK14582 pgaB outer membrane N 41.5 63 0.0014 33.2 6.1 99 45-148 45-177 (671)
248 KOG3253|consensus 40.7 18 0.00039 37.2 2.0 68 135-212 195-271 (784)
249 PF13899 Thioredoxin_7: Thiore 40.2 35 0.00076 24.3 3.0 43 46-88 16-60 (82)
250 PLN02752 [acyl-carrier protein 40.0 28 0.00061 31.7 3.1 30 181-210 108-143 (343)
251 KOG1282|consensus 39.2 59 0.0013 31.9 5.2 75 129-210 105-187 (454)
252 TIGR03607 patatin-related prot 38.6 37 0.00081 35.3 4.0 32 179-210 51-85 (739)
253 cd07213 Pat17_PNPLA8_PNPLA9_li 37.7 27 0.00059 31.2 2.6 19 194-212 37-55 (288)
254 PRK14581 hmsF outer membrane N 37.2 65 0.0014 33.2 5.4 99 45-148 45-177 (672)
255 cd07219 Pat_PNPLA1 Patatin-lik 36.7 46 0.00099 32.0 4.0 33 178-211 28-64 (382)
256 COG2910 Putative NADH-flavin r 36.5 24 0.00052 31.3 1.9 73 95-188 120-200 (211)
257 PRK05724 acetyl-CoA carboxylas 35.4 89 0.0019 29.4 5.6 17 46-62 106-122 (319)
258 KOG2385|consensus 34.9 55 0.0012 33.2 4.3 25 186-210 442-466 (633)
259 COG0218 Predicted GTPase [Gene 34.5 31 0.00067 30.4 2.3 22 133-162 63-84 (200)
260 cd07217 Pat17_PNPLA8_PNPLA9_li 34.2 34 0.00074 31.9 2.7 19 194-212 44-62 (344)
261 CHL00198 accA acetyl-CoA carbo 33.5 1.3E+02 0.0028 28.4 6.3 17 46-62 109-125 (322)
262 cd02874 GH18_CFLE_spore_hydrol 33.3 89 0.0019 27.9 5.1 110 46-159 57-183 (313)
263 PF07082 DUF1350: Protein of u 32.8 83 0.0018 28.7 4.8 23 192-214 91-113 (250)
264 KOG3967|consensus 31.9 46 0.00099 30.5 3.0 35 181-215 180-214 (297)
265 PF07519 Tannase: Tannase and 31.8 54 0.0012 32.0 3.7 77 141-218 52-142 (474)
266 TIGR02813 omega_3_PfaA polyket 31.5 44 0.00095 39.4 3.5 31 180-210 663-693 (2582)
267 KOG1283|consensus 31.3 98 0.0021 29.9 5.2 64 148-212 72-143 (414)
268 PLN02820 3-methylcrotonyl-CoA 31.2 44 0.00094 33.6 3.0 52 150-206 405-458 (569)
269 cd03129 GAT1_Peptidase_E_like 31.2 39 0.00084 28.6 2.3 27 181-208 104-130 (210)
270 PF03575 Peptidase_S51: Peptid 30.8 23 0.00051 28.6 0.9 13 193-205 70-82 (154)
271 PLN03230 acetyl-coenzyme A car 30.0 77 0.0017 31.1 4.4 17 46-62 176-192 (431)
272 cd07221 Pat_PNPLA3 Patatin-lik 29.7 52 0.0011 29.3 3.0 23 191-213 32-54 (252)
273 PF09949 DUF2183: Uncharacteri 29.4 76 0.0016 24.7 3.5 44 175-218 49-94 (100)
274 COG1576 Uncharacterized conser 29.1 1.1E+02 0.0025 25.9 4.7 48 141-201 61-108 (155)
275 PF00150 Cellulase: Cellulase 28.7 1.6E+02 0.0036 24.8 5.8 114 85-200 41-174 (281)
276 cd06549 GH18_trifunctional GH1 28.7 3.3E+02 0.0073 24.4 8.1 106 46-159 58-175 (298)
277 COG1246 ArgA N-acetylglutamate 28.4 40 0.00086 28.6 1.9 51 136-201 60-110 (153)
278 PF02590 SPOUT_MTase: Predicte 28.3 69 0.0015 26.7 3.3 47 143-201 63-109 (155)
279 PF03373 Octapeptide: Octapept 28.2 28 0.0006 15.9 0.5 6 89-94 1-6 (8)
280 PF05049 IIGP: Interferon-indu 28.1 22 0.00048 34.0 0.4 52 108-159 26-97 (376)
281 PRK13938 phosphoheptose isomer 26.9 1.7E+02 0.0036 25.2 5.5 39 173-213 30-68 (196)
282 TIGR01694 MTAP 5'-deoxy-5'-met 26.8 98 0.0021 27.0 4.2 38 24-61 17-57 (241)
283 PRK08666 5'-methylthioadenosin 26.0 95 0.0021 27.5 4.0 33 26-59 21-55 (261)
284 TIGR02883 spore_cwlD N-acetylm 25.6 1.6E+02 0.0035 24.6 5.1 43 149-193 1-47 (189)
285 PF06755 DUF1219: Protein of u 25.6 89 0.0019 25.4 3.3 60 98-158 15-80 (114)
286 PF01012 ETF: Electron transfe 25.4 1.9E+02 0.0042 23.1 5.4 51 149-211 61-112 (164)
287 COG0478 RIO-like serine/threon 25.4 3.7E+02 0.0081 25.3 7.8 69 106-189 205-273 (304)
288 KOG3847|consensus 24.9 28 0.0006 33.4 0.4 44 46-98 116-160 (399)
289 cd02955 SSP411 TRX domain, SSP 24.4 1.1E+02 0.0024 24.3 3.7 45 45-89 13-59 (124)
290 cd07199 Pat17_PNPLA8_PNPLA9_li 24.3 57 0.0012 28.4 2.2 18 194-211 37-54 (258)
291 cd01985 ETF The electron trans 24.2 1.9E+02 0.0041 23.7 5.2 52 149-212 62-114 (181)
292 PF01039 Carboxyl_trans: Carbo 23.9 33 0.00071 33.5 0.7 61 108-202 320-381 (493)
293 cd01715 ETF_alpha The electron 23.7 1.6E+02 0.0035 23.9 4.7 52 149-212 54-106 (168)
294 TIGR00513 accA acetyl-CoA carb 23.4 1.3E+02 0.0028 28.3 4.4 17 46-62 106-122 (316)
295 PRK13011 formyltetrahydrofolat 23.4 89 0.0019 28.5 3.3 112 102-215 63-189 (286)
296 PRK06027 purU formyltetrahydro 22.6 91 0.002 28.4 3.3 112 101-214 62-188 (286)
297 PRK13936 phosphoheptose isomer 22.5 2.3E+02 0.0051 23.9 5.6 38 174-213 29-66 (197)
298 PRK11613 folP dihydropteroate 22.3 4.5E+02 0.0098 24.1 7.7 80 108-199 124-219 (282)
299 TIGR00521 coaBC_dfp phosphopan 22.1 4E+02 0.0087 25.4 7.6 82 128-211 122-224 (390)
300 cd02960 AGR Anterior Gradient 21.9 1.6E+02 0.0035 24.0 4.2 48 45-92 21-70 (130)
301 PRK00103 rRNA large subunit me 21.8 1.7E+02 0.0038 24.4 4.5 47 143-201 63-109 (157)
302 PRK12467 peptide synthase; Pro 21.7 2.8E+02 0.006 34.1 7.6 73 133-211 3703-3777(3956)
303 KOG1532|consensus 21.0 1E+02 0.0022 29.3 3.2 31 43-81 13-43 (366)
304 TIGR00246 tRNA_RlmH_YbeA rRNA 20.9 1.6E+02 0.0036 24.5 4.2 46 143-202 62-107 (153)
305 cd03146 GAT1_Peptidase_E Type 20.8 82 0.0018 26.9 2.4 27 181-207 103-129 (212)
306 PF00448 SRP54: SRP54-type pro 20.6 2.7E+02 0.006 23.6 5.6 54 146-211 82-135 (196)
No 1
>KOG2931|consensus
Probab=100.00 E-value=3.3e-42 Score=310.98 Aligned_cols=144 Identities=51% Similarity=0.793 Sum_probs=135.6
Q ss_pred CCcccccccccccccccccccCCCCceeEEEEeCCccEEEEEecC--CCCCEEEEeCCCCCChhhhhhcccChhhHHHhh
Q psy5044 1 MDDVDLRQVQLSIPLTRSLARTDPTVEEVYVETDRGSILVAVAGN--RGKPAILTYHDLGLNYISNFQAFFNFSDMRSLL 78 (219)
Q Consensus 1 ~~~v~~~e~k~l~~~~~~~~~~~~~~~e~~i~t~~g~~~v~~~G~--~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~ 78 (219)
+||++++|+||+++.+.+ ++||+|+|.+|.+||+|+|+ ++||+||||||||+||+|||+.|||+|+|++++
T Consensus 4 ~~~~~~~d~~pl~~~~~~-------~~e~~V~T~~G~v~V~V~Gd~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~ 76 (326)
T KOG2931|consen 4 LQDVVSTDIKPLLEGGAT-------CQEHDVETAHGVVHVTVYGDPKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEIL 76 (326)
T ss_pred ccccccccchhhhcCCCc-------ceeeeeccccccEEEEEecCCCCCCceEEEecccccchHhHhHHhhcCHhHHHHH
Confidence 589999999999999833 89999999999999999994 569999999999999999999999999999999
Q ss_pred ccceEEEecCCCCCCCCCCcccccccchhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCC
Q psy5044 79 ENFSVYHVNAPGQEEGAQPLADDVTQHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQ 158 (219)
Q Consensus 79 ~~~~v~hv~~pG~~~~a~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGH 158 (219)
+||+|||||+||||+|||+||+
T Consensus 77 ~~fcv~HV~~PGqe~gAp~~p~---------------------------------------------------------- 98 (326)
T KOG2931|consen 77 EHFCVYHVDAPGQEDGAPSFPE---------------------------------------------------------- 98 (326)
T ss_pred hheEEEecCCCccccCCccCCC----------------------------------------------------------
Confidence 9999999999999999999853
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 159 EEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 159 G~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+|+|||||+||++|..+|++|+++.++.+|+.+||||..+||++||+||-+
T Consensus 99 ---------~y~yPsmd~LAd~l~~VL~~f~lk~vIg~GvGAGAyIL~rFAl~hp~rV~G 149 (326)
T KOG2931|consen 99 ---------GYPYPSMDDLADMLPEVLDHFGLKSVIGMGVGAGAYILARFALNHPERVLG 149 (326)
T ss_pred ---------CCCCCCHHHHHHHHHHHHHhcCcceEEEecccccHHHHHHHHhcChhheeE
Confidence 457889999999999999999999999999999999999999999999864
No 2
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=100.00 E-value=6.4e-38 Score=281.82 Aligned_cols=124 Identities=60% Similarity=0.923 Sum_probs=99.6
Q ss_pred eEEEEeCCccEEEEEecC--CCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCcccccccc
Q psy5044 28 EVYVETDRGSILVAVAGN--RGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDVTQH 105 (219)
Q Consensus 28 e~~i~t~~g~~~v~~~G~--~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~~~~ 105 (219)
||+|+|++|.++|+++|+ ++||+||||||+|+||+|||+.|||+++|++++++|+|||||+||||+||++||+
T Consensus 1 eh~v~t~~G~v~V~v~G~~~~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~~~f~i~Hi~aPGqe~ga~~~p~----- 75 (283)
T PF03096_consen 1 EHDVETPYGSVHVTVQGDPKGNKPAILTYHDVGLNHKSCFQGFFNFEDMQEILQNFCIYHIDAPGQEEGAATLPE----- 75 (283)
T ss_dssp -EEEEETTEEEEEEEESS--TTS-EEEEE--TT--HHHHCHHHHCSHHHHHHHTTSEEEEEE-TTTSTT-----T-----
T ss_pred CceeccCceEEEEEEEecCCCCCceEEEeccccccchHHHHHHhcchhHHHHhhceEEEEEeCCCCCCCcccccc-----
Confidence 799999999999999995 4599999999999999999999999999999999999999999999999998843
Q ss_pred hhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy5044 106 PLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVL 185 (219)
Q Consensus 106 ~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lL 185 (219)
+|.||||++||++|.++|
T Consensus 76 --------------------------------------------------------------~y~yPsmd~LAe~l~~Vl 93 (283)
T PF03096_consen 76 --------------------------------------------------------------GYQYPSMDQLAEMLPEVL 93 (283)
T ss_dssp --------------------------------------------------------------T-----HHHHHCTHHHHH
T ss_pred --------------------------------------------------------------cccccCHHHHHHHHHHHH
Confidence 457889999999999999
Q ss_pred hhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 186 SYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 186 d~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
++|++++++.+|..+||||..+||++||+||-+
T Consensus 94 ~~f~lk~vIg~GvGAGAnIL~rfAl~~p~~V~G 126 (283)
T PF03096_consen 94 DHFGLKSVIGFGVGAGANILARFALKHPERVLG 126 (283)
T ss_dssp HHHT---EEEEEETHHHHHHHHHHHHSGGGEEE
T ss_pred HhCCccEEEEEeeccchhhhhhccccCccceeE
Confidence 999999999999999999999999999999864
No 3
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.86 E-value=3.1e-21 Score=166.76 Aligned_cols=121 Identities=19% Similarity=0.160 Sum_probs=96.6
Q ss_pred CCCceeEEEEeCCccEEEEEecCCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCccccc
Q psy5044 23 DPTVEEVYVETDRGSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDV 102 (219)
Q Consensus 23 ~~~~~e~~i~t~~g~~~v~~~G~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~ 102 (219)
++.+++..++.+.-.+++...|++ +|+||++|++|.+... |. +.+..|.++|+|
T Consensus 5 ~~~~~~~~~~~~~~~i~y~~~G~~-~~~vlllHG~~~~~~~-w~-----~~~~~L~~~~~v------------------- 58 (294)
T PLN02824 5 EPQVETRTWRWKGYNIRYQRAGTS-GPALVLVHGFGGNADH-WR-----KNTPVLAKSHRV------------------- 58 (294)
T ss_pred CCCCCCceEEEcCeEEEEEEcCCC-CCeEEEECCCCCChhH-HH-----HHHHHHHhCCeE-------------------
Confidence 344556667666667888887753 4899999999999875 65 456666666666
Q ss_pred ccchhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCC----CCCCCCHHHHH
Q psy5044 103 TQHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLAD----DYIYPTMDELS 178 (219)
Q Consensus 103 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~----~~~~~Smd~lA 178 (219)
|++|+||||+|..+.+. . ..++++++|
T Consensus 59 ------------------------------------------------i~~DlpG~G~S~~~~~~~~~~~-~~~~~~~~a 89 (294)
T PLN02824 59 ------------------------------------------------YAIDLLGYGYSDKPNPRSAPPN-SFYTFETWG 89 (294)
T ss_pred ------------------------------------------------EEEcCCCCCCCCCCcccccccc-ccCCHHHHH
Confidence 99999999977643221 1 124999999
Q ss_pred HHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 179 NQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 179 ~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+++.++|+++++++++++||||||+||+.+|++||+||++
T Consensus 90 ~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~ 129 (294)
T PLN02824 90 EQLNDFCSDVVGDPAFVICNSVGGVVGLQAAVDAPELVRG 129 (294)
T ss_pred HHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhChhheeE
Confidence 9999999999999999999999999999999999999975
No 4
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.85 E-value=1.4e-20 Score=164.03 Aligned_cols=127 Identities=17% Similarity=0.070 Sum_probs=98.1
Q ss_pred cccccCCCCceeEEEEeCC-----ccEEEEEecCCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhc-cceEEEecCCC
Q psy5044 17 RSLARTDPTVEEVYVETDR-----GSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLE-NFSVYHVNAPG 90 (219)
Q Consensus 17 ~~~~~~~~~~~e~~i~t~~-----g~~~v~~~G~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~-~~~v~hv~~pG 90 (219)
+--+..+..-..++++.+. ..+++...|++++|+||++|++|.+... |. +.+..|.+ .|+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~G~~~~~~lvliHG~~~~~~~-w~-----~~~~~L~~~gy~v------- 76 (302)
T PRK00870 10 RFENLPDYPFAPHYVDVDDGDGGPLRMHYVDEGPADGPPVLLLHGEPSWSYL-YR-----KMIPILAAAGHRV------- 76 (302)
T ss_pred cccCCcCCCCCceeEeecCCCCceEEEEEEecCCCCCCEEEEECCCCCchhh-HH-----HHHHHHHhCCCEE-------
Confidence 3334444444556666655 3688888887778999999999988664 54 45556653 3666
Q ss_pred CCCCCCCcccccccchhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCC
Q psy5044 91 QEEGAQPLADDVTQHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYI 170 (219)
Q Consensus 91 ~~~~a~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~ 170 (219)
+++|+||||+|+.+.. ...
T Consensus 77 ------------------------------------------------------------i~~Dl~G~G~S~~~~~-~~~ 95 (302)
T PRK00870 77 ------------------------------------------------------------IAPDLIGFGRSDKPTR-RED 95 (302)
T ss_pred ------------------------------------------------------------EEECCCCCCCCCCCCC-ccc
Confidence 9999999997753221 112
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 171 YPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 171 ~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+|++++|+++.++|+++++++++++||||||+||+.+|.+||++|++
T Consensus 96 -~~~~~~a~~l~~~l~~l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~ 142 (302)
T PRK00870 96 -YTYARHVEWMRSWFEQLDLTDVTLVCQDWGGLIGLRLAAEHPDRFAR 142 (302)
T ss_pred -CCHHHHHHHHHHHHHHcCCCCEEEEEEChHHHHHHHHHHhChhheeE
Confidence 38999999999999999999999999999999999999999999875
No 5
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.85 E-value=8e-21 Score=163.18 Aligned_cols=112 Identities=23% Similarity=0.351 Sum_probs=91.6
Q ss_pred EEEeCCccEEEEEe-cCCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCcccccccchhh
Q psy5044 30 YVETDRGSILVAVA-GNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDVTQHPLA 108 (219)
Q Consensus 30 ~i~t~~g~~~v~~~-G~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~~~~~~~ 108 (219)
.++++...+++.+. |..++|+||++|++|.+... |. +.++.|.++++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~plvllHG~~~~~~~-w~-----~~~~~L~~~~~v------------------------- 54 (276)
T TIGR02240 6 TIDLDGQSIRTAVRPGKEGLTPLLIFNGIGANLEL-VF-----PFIEALDPDLEV------------------------- 54 (276)
T ss_pred EeccCCcEEEEEEecCCCCCCcEEEEeCCCcchHH-HH-----HHHHHhccCceE-------------------------
Confidence 34556668888775 34456899999999999875 54 556666666666
Q ss_pred HHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q psy5044 109 LLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYF 188 (219)
Q Consensus 109 ~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~L 188 (219)
|++|+||||+|.. +.. .+ +++++++++.++++++
T Consensus 55 ------------------------------------------i~~Dl~G~G~S~~--~~~-~~-~~~~~~~~~~~~i~~l 88 (276)
T TIGR02240 55 ------------------------------------------IAFDVPGVGGSST--PRH-PY-RFPGLAKLAARMLDYL 88 (276)
T ss_pred ------------------------------------------EEECCCCCCCCCC--CCC-cC-cHHHHHHHHHHHHHHh
Confidence 9999999987753 222 33 8999999999999999
Q ss_pred CCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 189 GLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 189 gI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
++++++++||||||+||+.+|.++|++|++
T Consensus 89 ~~~~~~LvG~S~GG~va~~~a~~~p~~v~~ 118 (276)
T TIGR02240 89 DYGQVNAIGVSWGGALAQQFAHDYPERCKK 118 (276)
T ss_pred CcCceEEEEECHHHHHHHHHHHHCHHHhhh
Confidence 999999999999999999999999999986
No 6
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.84 E-value=3.4e-20 Score=160.38 Aligned_cols=117 Identities=18% Similarity=0.113 Sum_probs=95.2
Q ss_pred CCCceeEEEEeCCccEEEEEecCCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCccccc
Q psy5044 23 DPTVEEVYVETDRGSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDV 102 (219)
Q Consensus 23 ~~~~~e~~i~t~~g~~~v~~~G~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~ 102 (219)
++..+.+.++++...+++...| ++|+||++|+++.+... |. +.++.|.++++|
T Consensus 4 ~~~~~~~~~~~~g~~i~y~~~G--~g~~vvllHG~~~~~~~-w~-----~~~~~L~~~~~v------------------- 56 (295)
T PRK03592 4 EPPGEMRRVEVLGSRMAYIETG--EGDPIVFLHGNPTSSYL-WR-----NIIPHLAGLGRC------------------- 56 (295)
T ss_pred cCCCcceEEEECCEEEEEEEeC--CCCEEEEECCCCCCHHH-HH-----HHHHHHhhCCEE-------------------
Confidence 3445556666666688988888 45899999999988764 54 455566555665
Q ss_pred ccchhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy5044 103 TQHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLL 182 (219)
Q Consensus 103 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~ 182 (219)
|++|+||||.|+.+ .. .| +++++|+++.
T Consensus 57 ------------------------------------------------ia~D~~G~G~S~~~--~~-~~-~~~~~a~dl~ 84 (295)
T PRK03592 57 ------------------------------------------------LAPDLIGMGASDKP--DI-DY-TFADHARYLD 84 (295)
T ss_pred ------------------------------------------------EEEcCCCCCCCCCC--CC-CC-CHHHHHHHHH
Confidence 99999999876543 22 33 8999999999
Q ss_pred HHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 183 FVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 183 ~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
++++++++++++++||||||+||+.+|.+||++|++
T Consensus 85 ~ll~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~ 120 (295)
T PRK03592 85 AWFDALGLDDVVLVGHDWGSALGFDWAARHPDRVRG 120 (295)
T ss_pred HHHHHhCCCCeEEEEECHHHHHHHHHHHhChhheeE
Confidence 999999999999999999999999999999999975
No 7
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.82 E-value=1.7e-19 Score=150.86 Aligned_cols=115 Identities=23% Similarity=0.200 Sum_probs=93.7
Q ss_pred eEEEEeCCccEEEEEecCCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCcccccccchh
Q psy5044 28 EVYVETDRGSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDVTQHPL 107 (219)
Q Consensus 28 e~~i~t~~g~~~v~~~G~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~~~~~~ 107 (219)
...+.++...+++...|+.++|+||++|++|.+... |. +.+..|.+.|+|
T Consensus 8 ~~~~~~~~~~~~~~~~g~~~~~~vv~~hG~~~~~~~-~~-----~~~~~l~~~~~v------------------------ 57 (278)
T TIGR03056 8 SRRVTVGPFHWHVQDMGPTAGPLLLLLHGTGASTHS-WR-----DLMPPLARSFRV------------------------ 57 (278)
T ss_pred cceeeECCEEEEEEecCCCCCCeEEEEcCCCCCHHH-HH-----HHHHHHhhCcEE------------------------
Confidence 345566666888888887778999999999998765 54 445555555555
Q ss_pred hHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q psy5044 108 ALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSY 187 (219)
Q Consensus 108 ~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~ 187 (219)
+++|+||||.|..+... . .|++++|+++.+++++
T Consensus 58 -------------------------------------------i~~D~~G~G~S~~~~~~--~-~~~~~~~~~l~~~i~~ 91 (278)
T TIGR03056 58 -------------------------------------------VAPDLPGHGFTRAPFRF--R-FTLPSMAEDLSALCAA 91 (278)
T ss_pred -------------------------------------------EeecCCCCCCCCCcccc--C-CCHHHHHHHHHHHHHH
Confidence 99999999876543321 2 3999999999999999
Q ss_pred hCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 188 FGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 188 LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+++++++++||||||++++.+|.++|+|+++
T Consensus 92 ~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~ 122 (278)
T TIGR03056 92 EGLSPDGVIGHSAGAAIALRLALDGPVTPRM 122 (278)
T ss_pred cCCCCceEEEECccHHHHHHHHHhCCcccce
Confidence 9999999999999999999999999998863
No 8
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.81 E-value=4.9e-19 Score=154.88 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=95.6
Q ss_pred CCCceeEEEEeCCccEEEEEecCCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCccccc
Q psy5044 23 DPTVEEVYVETDRGSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDV 102 (219)
Q Consensus 23 ~~~~~e~~i~t~~g~~~v~~~G~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~ 102 (219)
....++..++++.+.+|+...|+ +|+||++|+++.+... |. +.+..|.++|+|
T Consensus 11 ~~~~~~~~~~~~~~~i~y~~~G~--~~~iv~lHG~~~~~~~-~~-----~~~~~l~~~~~v------------------- 63 (286)
T PRK03204 11 LYPFESRWFDSSRGRIHYIDEGT--GPPILLCHGNPTWSFL-YR-----DIIVALRDRFRC------------------- 63 (286)
T ss_pred cccccceEEEcCCcEEEEEECCC--CCEEEEECCCCccHHH-HH-----HHHHHHhCCcEE-------------------
Confidence 34467788999888999998884 5899999999976543 54 344445555555
Q ss_pred ccchhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy5044 103 TQHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLL 182 (219)
Q Consensus 103 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~ 182 (219)
|++|+||||.|..+ .++.+ +++++|+++.
T Consensus 64 ------------------------------------------------i~~D~~G~G~S~~~--~~~~~-~~~~~~~~~~ 92 (286)
T PRK03204 64 ------------------------------------------------VAPDYLGFGLSERP--SGFGY-QIDEHARVIG 92 (286)
T ss_pred ------------------------------------------------EEECCCCCCCCCCC--Ccccc-CHHHHHHHHH
Confidence 99999999876533 22223 8999999999
Q ss_pred HHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 183 FVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 183 ~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
++++++++++++++||||||+||+.+|.++|++|++
T Consensus 93 ~~~~~~~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~ 128 (286)
T PRK03204 93 EFVDHLGLDRYLSMGQDWGGPISMAVAVERADRVRG 128 (286)
T ss_pred HHHHHhCCCCEEEEEECccHHHHHHHHHhChhheeE
Confidence 999999999999999999999999999999999985
No 9
>PRK06489 hypothetical protein; Provisional
Probab=99.80 E-value=3.3e-19 Score=160.84 Aligned_cols=74 Identities=11% Similarity=0.150 Sum_probs=59.8
Q ss_pred hcCceEEEEcCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHH-hhhCCCcEE-EEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 145 LENFSVYHVNAPGQEEGAQPLAD---DYIYPTMDELSNQLLFVL-SYFGLHSVI-GLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 145 ~~~~rvIavDlpGHG~s~s~~~~---~~~~~Smd~lA~dL~~lL-d~LgI~~~~-lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+++|+||++|+||||+|+.+... ....++++++|+++.+++ +++++++++ ++||||||+||+.+|.+||+||++
T Consensus 103 ~~~~~Via~Dl~GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~~l~~~lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~ 181 (360)
T PRK06489 103 ASKYFIILPDGIGHGKSSKPSDGLRAAFPRYDYDDMVEAQYRLVTEGLGVKHLRLILGTSMGGMHAWMWGEKYPDFMDA 181 (360)
T ss_pred ccCCEEEEeCCCCCCCCCCCCcCCCCCCCcccHHHHHHHHHHHHHHhcCCCceeEEEEECHHHHHHHHHHHhCchhhhe
Confidence 56677799999999977543211 001248999999998855 999999986 899999999999999999999875
No 10
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.80 E-value=6.2e-19 Score=159.83 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=90.8
Q ss_pred EEeCCc-cEEEEEecCC----CCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCcccccccc
Q psy5044 31 VETDRG-SILVAVAGNR----GKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDVTQH 105 (219)
Q Consensus 31 i~t~~g-~~~v~~~G~~----~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~~~~ 105 (219)
++-.++ .++|...|++ ++|+||++|++|.++.. |. +.+..|.+.|+|
T Consensus 66 ~~~~g~~~i~Y~~~G~g~~~~~gp~lvllHG~~~~~~~-w~-----~~~~~L~~~~~v---------------------- 117 (360)
T PLN02679 66 WKWKGEYSINYLVKGSPEVTSSGPPVLLVHGFGASIPH-WR-----RNIGVLAKNYTV---------------------- 117 (360)
T ss_pred EEECCceeEEEEEecCcccCCCCCeEEEECCCCCCHHH-HH-----HHHHHHhcCCEE----------------------
Confidence 333444 8999999976 67999999999999765 54 455556556666
Q ss_pred hhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy5044 106 PLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVL 185 (219)
Q Consensus 106 ~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lL 185 (219)
|++|+||||+|..+. +..| |++++|+++.++|
T Consensus 118 ---------------------------------------------ia~Dl~G~G~S~~~~--~~~~-~~~~~a~~l~~~l 149 (360)
T PLN02679 118 ---------------------------------------------YAIDLLGFGASDKPP--GFSY-TMETWAELILDFL 149 (360)
T ss_pred ---------------------------------------------EEECCCCCCCCCCCC--Cccc-cHHHHHHHHHHHH
Confidence 999999999765432 2233 9999999999999
Q ss_pred hhhCCCcEEEEEEcHHHHHHHHHHH-hCcCcccC
Q psy5044 186 SYFGLHSVIGLGVGAGGNILARFAL-SHLWYCSL 218 (219)
Q Consensus 186 d~LgI~~~~lvG~SmGG~IAl~fA~-~~P~RV~~ 218 (219)
+++++++++++||||||+|++.+|. ++|+||++
T Consensus 150 ~~l~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~ 183 (360)
T PLN02679 150 EEVVQKPTVLIGNSVGSLACVIAASESTRDLVRG 183 (360)
T ss_pred HHhcCCCeEEEEECHHHHHHHHHHHhcChhhcCE
Confidence 9999999999999999999999998 47999975
No 11
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.80 E-value=5.9e-19 Score=144.02 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=86.2
Q ss_pred EEEEEecC--CCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCcccccccchhhHHHHHHh
Q psy5044 38 ILVAVAGN--RGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDVTQHPLALLMIIRH 115 (219)
Q Consensus 38 ~~v~~~G~--~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~~~~~~~~~~v~~~ 115 (219)
+|+.+.|+ .++|+||++|++|.+... |. +.+..+.++|+|
T Consensus 1 ~~~~~~~~~~~~~~~iv~lhG~~~~~~~-~~-----~~~~~l~~~~~v-------------------------------- 42 (257)
T TIGR03611 1 MHYELHGPPDADAPVVVLSSGLGGSGSY-WA-----PQLDVLTQRFHV-------------------------------- 42 (257)
T ss_pred CEEEEecCCCCCCCEEEEEcCCCcchhH-HH-----HHHHHHHhccEE--------------------------------
Confidence 46677774 578999999999998764 54 345555556666
Q ss_pred cCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEE
Q psy5044 116 YGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIG 195 (219)
Q Consensus 116 ~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~l 195 (219)
+++|+||||+|..+.+. .+++++.++++.+++++++++++++
T Consensus 43 -----------------------------------i~~D~~G~G~S~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~l 84 (257)
T TIGR03611 43 -----------------------------------VTYDHRGTGRSPGELPP---GYSIAHMADDVLQLLDALNIERFHF 84 (257)
T ss_pred -----------------------------------EEEcCCCCCCCCCCCcc---cCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 99999999977543332 2499999999999999999999999
Q ss_pred EEEcHHHHHHHHHHHhCcCcccC
Q psy5044 196 LGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 196 vG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+||||||++|+.+|.++|++|++
T Consensus 85 ~G~S~Gg~~a~~~a~~~~~~v~~ 107 (257)
T TIGR03611 85 VGHALGGLIGLQLALRYPERLLS 107 (257)
T ss_pred EEechhHHHHHHHHHHChHHhHH
Confidence 99999999999999999998865
No 12
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.79 E-value=8.2e-19 Score=146.46 Aligned_cols=103 Identities=12% Similarity=0.113 Sum_probs=84.3
Q ss_pred EEEEEe---cCCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCcccccccchhhHHHHHH
Q psy5044 38 ILVAVA---GNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDVTQHPLALLMIIR 114 (219)
Q Consensus 38 ~~v~~~---G~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~~~~~~~~~~v~~ 114 (219)
++++.. ++.++|+||++|+++.+..+ |. +.+..|.++|+|
T Consensus 3 ~~~~~~~~~~~~~~~~iv~lhG~~~~~~~-~~-----~~~~~l~~~~~v------------------------------- 45 (255)
T PRK10673 3 LNIRAQTAQNPHNNSPIVLVHGLFGSLDN-LG-----VLARDLVNDHDI------------------------------- 45 (255)
T ss_pred ceeeeccCCCCCCCCCEEEECCCCCchhH-HH-----HHHHHHhhCCeE-------------------------------
Confidence 345553 24688999999999999764 54 345556555666
Q ss_pred hcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEE
Q psy5044 115 HYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVI 194 (219)
Q Consensus 115 ~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~ 194 (219)
|++|+||||+|.. +.. .|++++|+++.++++++++++++
T Consensus 46 ------------------------------------i~~D~~G~G~s~~--~~~---~~~~~~~~d~~~~l~~l~~~~~~ 84 (255)
T PRK10673 46 ------------------------------------IQVDMRNHGLSPR--DPV---MNYPAMAQDLLDTLDALQIEKAT 84 (255)
T ss_pred ------------------------------------EEECCCCCCCCCC--CCC---CCHHHHHHHHHHHHHHcCCCceE
Confidence 9999999987653 222 38999999999999999999999
Q ss_pred EEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 195 GLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 195 lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
++||||||++|+.+|.++|+||++
T Consensus 85 lvGhS~Gg~va~~~a~~~~~~v~~ 108 (255)
T PRK10673 85 FIGHSMGGKAVMALTALAPDRIDK 108 (255)
T ss_pred EEEECHHHHHHHHHHHhCHhhcce
Confidence 999999999999999999999875
No 13
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.79 E-value=2.1e-18 Score=142.13 Aligned_cols=70 Identities=24% Similarity=0.147 Sum_probs=59.3
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 148 FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
++||++|+||||.|..+.... .+.|++++++++.++++++++++++++||||||++++.+|.++|+++++
T Consensus 54 ~~vi~~d~~G~G~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~ 123 (288)
T TIGR01250 54 REVIMYDQLGCGYSDQPDDSD-ELWTIDYFVDELEEVREKLGLDKFYLLGHSWGGMLAQEYALKYGQHLKG 123 (288)
T ss_pred CEEEEEcCCCCCCCCCCCccc-ccccHHHHHHHHHHHHHHcCCCcEEEEEeehHHHHHHHHHHhCccccce
Confidence 444999999998765332211 1359999999999999999999999999999999999999999999875
No 14
>PLN02965 Probable pheophorbidase
Probab=99.79 E-value=6.6e-19 Score=150.02 Aligned_cols=65 Identities=20% Similarity=0.187 Sum_probs=56.8
Q ss_pred EEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCC-CcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 151 YHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGL-HSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 151 IavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI-~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
|++|+||||+|..+. + ...|++++|+++.++|+++++ ++++++||||||+|++.+|.+||+||++
T Consensus 34 ia~Dl~G~G~S~~~~--~-~~~~~~~~a~dl~~~l~~l~~~~~~~lvGhSmGG~ia~~~a~~~p~~v~~ 99 (255)
T PLN02965 34 TCVDLTGAGISLTDS--N-TVSSSDQYNRPLFALLSDLPPDHKVILVGHSIGGGSVTEALCKFTDKISM 99 (255)
T ss_pred EEecCCcCCCCCCCc--c-ccCCHHHHHHHHHHHHHhcCCCCCEEEEecCcchHHHHHHHHhCchheeE
Confidence 999999998765322 2 124899999999999999998 4999999999999999999999999974
No 15
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.78 E-value=1.6e-18 Score=139.38 Aligned_cols=104 Identities=17% Similarity=0.317 Sum_probs=85.2
Q ss_pred EEEEEecCC-CCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCcccccccchhhHHHHHHhc
Q psy5044 38 ILVAVAGNR-GKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDVTQHPLALLMIIRHY 116 (219)
Q Consensus 38 ~~v~~~G~~-~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~~~~~~~~~~v~~~~ 116 (219)
+++...|++ ++|+||++|++|.++.. |. +.+..+.+.|+|
T Consensus 2 ~~~~~~g~~~~~~~li~~hg~~~~~~~-~~-----~~~~~l~~~~~v--------------------------------- 42 (251)
T TIGR02427 2 LHYRLDGAADGAPVLVFINSLGTDLRM-WD-----PVLPALTPDFRV--------------------------------- 42 (251)
T ss_pred ceEEeecCCCCCCeEEEEcCcccchhh-HH-----HHHHHhhcccEE---------------------------------
Confidence 677788865 78999999999998764 54 334445455555
Q ss_pred CccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEE
Q psy5044 117 GMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGL 196 (219)
Q Consensus 117 ~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lv 196 (219)
+++|+||||+|.. +.. . .+++++++++.+++++++.++++++
T Consensus 43 ----------------------------------~~~d~~G~G~s~~--~~~-~-~~~~~~~~~~~~~i~~~~~~~v~li 84 (251)
T TIGR02427 43 ----------------------------------LRYDKRGHGLSDA--PEG-P-YSIEDLADDVLALLDHLGIERAVFC 84 (251)
T ss_pred ----------------------------------EEecCCCCCCCCC--CCC-C-CCHHHHHHHHHHHHHHhCCCceEEE
Confidence 9999999987643 221 2 3999999999999999999999999
Q ss_pred EEcHHHHHHHHHHHhCcCcccC
Q psy5044 197 GVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 197 G~SmGG~IAl~fA~~~P~RV~~ 218 (219)
||||||++++.+|.++|+++++
T Consensus 85 G~S~Gg~~a~~~a~~~p~~v~~ 106 (251)
T TIGR02427 85 GLSLGGLIAQGLAARRPDRVRA 106 (251)
T ss_pred EeCchHHHHHHHHHHCHHHhHH
Confidence 9999999999999999998864
No 16
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.77 E-value=4.7e-18 Score=144.21 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=56.6
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 147 NFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 147 ~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
.|+|+++|+||||+|..... ++ ..+ ..+|+++.++++++++++++++||||||+|++++|.+||+||++
T Consensus 60 ~~~vi~~D~~G~G~S~~~~~-~~-~~~-~~~~~~l~~~l~~l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~ 128 (282)
T TIGR03343 60 GYRVILKDSPGFNKSDAVVM-DE-QRG-LVNARAVKGLMDALDIEKAHLVGNSMGGATALNFALEYPDRIGK 128 (282)
T ss_pred CCEEEEECCCCCCCCCCCcC-cc-ccc-chhHHHHHHHHHHcCCCCeeEEEECchHHHHHHHHHhChHhhce
Confidence 35559999999998754321 11 112 26799999999999999999999999999999999999999875
No 17
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.77 E-value=1.4e-18 Score=155.63 Aligned_cols=67 Identities=13% Similarity=0.182 Sum_probs=57.8
Q ss_pred cCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcE-EEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 146 ENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSV-IGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 146 ~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~-~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
++||||++|+||||++. +. .+ +++++|+++.++|++++++++ +++||||||+||+++|.+||+||++
T Consensus 98 ~~~~Vi~~Dl~G~g~s~---~~--~~-~~~~~a~dl~~ll~~l~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~ 165 (343)
T PRK08775 98 ARFRLLAFDFIGADGSL---DV--PI-DTADQADAIALLLDALGIARLHAFVGYSYGALVGLQFASRHPARVRT 165 (343)
T ss_pred cccEEEEEeCCCCCCCC---CC--CC-CHHHHHHHHHHHHHHcCCCcceEEEEECHHHHHHHHHHHHChHhhhe
Confidence 45666999999997542 22 23 889999999999999999875 7999999999999999999999975
No 18
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.77 E-value=3.1e-18 Score=142.27 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=56.8
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCc-ccC
Q psy5044 148 FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWY-CSL 218 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~R-V~~ 218 (219)
||||++|+||||.|.. +.. .+++++|+++.++++++++++++++||||||.+|+.+|.++|++ |++
T Consensus 28 ~~vi~~D~~G~G~S~~--~~~---~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~ 94 (242)
T PRK11126 28 YPRLYIDLPGHGGSAA--ISV---DGFADVSRLLSQTLQSYNILPYWLVGYSLGGRIAMYYACQGLAGGLCG 94 (242)
T ss_pred CCEEEecCCCCCCCCC--ccc---cCHHHHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHhCCcccccE
Confidence 3449999999987653 222 28999999999999999999999999999999999999999764 764
No 19
>PRK07581 hypothetical protein; Validated
Probab=99.76 E-value=1.6e-18 Score=153.89 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=54.3
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCCCCCHHH-----HHHHHHH----HHhhhCCCc-EEEEEEcHHHHHHHHHHHhCcCcc
Q psy5044 147 NFSVYHVNAPGQEEGAQPLADDYIYPTMDE-----LSNQLLF----VLSYFGLHS-VIGLGVGAGGNILARFALSHLWYC 216 (219)
Q Consensus 147 ~~rvIavDlpGHG~s~s~~~~~~~~~Smd~-----lA~dL~~----lLd~LgI~~-~~lvG~SmGG~IAl~fA~~~P~RV 216 (219)
+||||++|+||||+|+.+...... +|+++ +|+++.+ ++++|++++ +++|||||||+||+++|.+||+||
T Consensus 71 ~~~vi~~D~~G~G~S~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~lgi~~~~~lvG~S~GG~va~~~a~~~P~~V 149 (339)
T PRK07581 71 KYFIIIPNMFGNGLSSSPSNTPAP-FNAARFPHVTIYDNVRAQHRLLTEKFGIERLALVVGWSMGAQQTYHWAVRYPDMV 149 (339)
T ss_pred ceEEEEecCCCCCCCCCCCCCCCC-CCCCCCCceeHHHHHHHHHHHHHHHhCCCceEEEEEeCHHHHHHHHHHHHCHHHH
Confidence 456699999999987643321111 24443 5566655 889999999 589999999999999999999999
Q ss_pred cC
Q psy5044 217 SL 218 (219)
Q Consensus 217 ~~ 218 (219)
++
T Consensus 150 ~~ 151 (339)
T PRK07581 150 ER 151 (339)
T ss_pred hh
Confidence 86
No 20
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.76 E-value=9.1e-18 Score=160.61 Aligned_cols=121 Identities=15% Similarity=0.173 Sum_probs=91.5
Q ss_pred eeEEEEeCCccEEEEEecCCC---CCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCcccccc
Q psy5044 27 EEVYVETDRGSILVAVAGNRG---KPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDVT 103 (219)
Q Consensus 27 ~e~~i~t~~g~~~v~~~G~~~---~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~~ 103 (219)
....+.|+...+||...|+.+ +|+||++||++.|... |.. ..++.+.+
T Consensus 177 ~~~~~~~~~~~l~~~~~gp~~~~~k~~VVLlHG~~~s~~~-W~~----~~~~~L~~------------------------ 227 (481)
T PLN03087 177 CTSWLSSSNESLFVHVQQPKDNKAKEDVLFIHGFISSSAF-WTE----TLFPNFSD------------------------ 227 (481)
T ss_pred eeeeEeeCCeEEEEEEecCCCCCCCCeEEEECCCCccHHH-HHH----HHHHHHHH------------------------
Confidence 344556666689999999543 6899999999999764 531 11223321
Q ss_pred cchhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHH-
Q psy5044 104 QHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLL- 182 (219)
Q Consensus 104 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~- 182 (219)
..+..|+||++|+||||+|..+. + ..++++++++++.
T Consensus 228 ---------------------------------------~~~~~yrVia~Dl~G~G~S~~p~--~-~~ytl~~~a~~l~~ 265 (481)
T PLN03087 228 ---------------------------------------AAKSTYRLFAVDLLGFGRSPKPA--D-SLYTLREHLEMIER 265 (481)
T ss_pred ---------------------------------------HhhCCCEEEEECCCCCCCCcCCC--C-CcCCHHHHHHHHHH
Confidence 01234455999999998775432 2 2249999999994
Q ss_pred HHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 183 FVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 183 ~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
++++++++++++++||||||+||+.+|.+||++|++
T Consensus 266 ~ll~~lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~ 301 (481)
T PLN03087 266 SVLERYKVKSFHIVAHSLGCILALALAVKHPGAVKS 301 (481)
T ss_pred HHHHHcCCCCEEEEEECHHHHHHHHHHHhChHhccE
Confidence 899999999999999999999999999999999875
No 21
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.75 E-value=1.8e-17 Score=153.95 Aligned_cols=116 Identities=15% Similarity=0.131 Sum_probs=92.9
Q ss_pred EEEEeCCc-cEEEEEecCCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCcccccccchh
Q psy5044 29 VYVETDRG-SILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDVTQHPL 107 (219)
Q Consensus 29 ~~i~t~~g-~~~v~~~G~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~~~~~~ 107 (219)
+..-+..| .+++...|++++|+||++|+++.+..+ |. +.+..|.+.++|
T Consensus 107 ~~~~~~~~~~~~y~~~G~~~~~~ivllHG~~~~~~~-w~-----~~~~~L~~~~~V------------------------ 156 (383)
T PLN03084 107 QSQASSDLFRWFCVESGSNNNPPVLLIHGFPSQAYS-YR-----KVLPVLSKNYHA------------------------ 156 (383)
T ss_pred eeEEcCCceEEEEEecCCCCCCeEEEECCCCCCHHH-HH-----HHHHHHhcCCEE------------------------
Confidence 33334555 778888898788999999999988765 54 445555555555
Q ss_pred hHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHh
Q psy5044 108 ALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLAD-DYIYPTMDELSNQLLFVLS 186 (219)
Q Consensus 108 ~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~-~~~~~Smd~lA~dL~~lLd 186 (219)
|++|+||||.|..+... +.. +|+++++++|.++++
T Consensus 157 -------------------------------------------ia~DlpG~G~S~~p~~~~~~~-ys~~~~a~~l~~~i~ 192 (383)
T PLN03084 157 -------------------------------------------IAFDWLGFGFSDKPQPGYGFN-YTLDEYVSSLESLID 192 (383)
T ss_pred -------------------------------------------EEECCCCCCCCCCCccccccc-CCHHHHHHHHHHHHH
Confidence 99999999977654321 112 399999999999999
Q ss_pred hhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 187 YFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 187 ~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
++++++++++|+||||+|++.||.+||++|++
T Consensus 193 ~l~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~ 224 (383)
T PLN03084 193 ELKSDKVSLVVQGYFSPPVVKYASAHPDKIKK 224 (383)
T ss_pred HhCCCCceEEEECHHHHHHHHHHHhChHhhcE
Confidence 99999999999999999999999999999975
No 22
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.75 E-value=7.6e-18 Score=142.36 Aligned_cols=98 Identities=20% Similarity=0.265 Sum_probs=77.9
Q ss_pred EEEEEecCCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCcccccccchhhHHHHHHhcC
Q psy5044 38 ILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDVTQHPLALLMIIRHYG 117 (219)
Q Consensus 38 ~~v~~~G~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~~~~~~~~~~v~~~~~ 117 (219)
+++...|++ .|+||++||+|.++.. |. +.+..|.++|+|
T Consensus 4 ~~y~~~G~g-~~~ivllHG~~~~~~~-w~-----~~~~~L~~~~~v---------------------------------- 42 (256)
T PRK10349 4 IWWQTKGQG-NVHLVLLHGWGLNAEV-WR-----CIDEELSSHFTL---------------------------------- 42 (256)
T ss_pred cchhhcCCC-CCeEEEECCCCCChhH-HH-----HHHHHHhcCCEE----------------------------------
Confidence 566667743 3579999999999875 65 556666666666
Q ss_pred ccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEE
Q psy5044 118 MDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLG 197 (219)
Q Consensus 118 ~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG 197 (219)
|++|+||||.|+. +. . .+++++++++.+ +++++++++|
T Consensus 43 ---------------------------------i~~Dl~G~G~S~~--~~--~-~~~~~~~~~l~~----~~~~~~~lvG 80 (256)
T PRK10349 43 ---------------------------------HLVDLPGFGRSRG--FG--A-LSLADMAEAVLQ----QAPDKAIWLG 80 (256)
T ss_pred ---------------------------------EEecCCCCCCCCC--CC--C-CCHHHHHHHHHh----cCCCCeEEEE
Confidence 9999999987653 22 2 389999888764 5789999999
Q ss_pred EcHHHHHHHHHHHhCcCcccC
Q psy5044 198 VGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 198 ~SmGG~IAl~fA~~~P~RV~~ 218 (219)
|||||+||+.+|.++|++|++
T Consensus 81 hS~Gg~ia~~~a~~~p~~v~~ 101 (256)
T PRK10349 81 WSLGGLVASQIALTHPERVQA 101 (256)
T ss_pred ECHHHHHHHHHHHhChHhhhe
Confidence 999999999999999999875
No 23
>PLN02578 hydrolase
Probab=99.74 E-value=2.6e-17 Score=148.46 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=88.5
Q ss_pred EEeCCccEEEEEecCCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCcccccccchhhHH
Q psy5044 31 VETDRGSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDVTQHPLALL 110 (219)
Q Consensus 31 i~t~~g~~~v~~~G~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~~~~~~~~~ 110 (219)
+......+++...| ++|+||++|++|.+... |. +.+..|.++|+|
T Consensus 71 ~~~~~~~i~Y~~~g--~g~~vvliHG~~~~~~~-w~-----~~~~~l~~~~~v--------------------------- 115 (354)
T PLN02578 71 WTWRGHKIHYVVQG--EGLPIVLIHGFGASAFH-WR-----YNIPELAKKYKV--------------------------- 115 (354)
T ss_pred EEECCEEEEEEEcC--CCCeEEEECCCCCCHHH-HH-----HHHHHHhcCCEE---------------------------
Confidence 34444578888888 45889999999998654 54 445556555666
Q ss_pred HHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCC
Q psy5044 111 MIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGL 190 (219)
Q Consensus 111 ~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI 190 (219)
+++|+||||.|..+. . .| +++++++++.+++++++.
T Consensus 116 ----------------------------------------~~~D~~G~G~S~~~~-~--~~-~~~~~a~~l~~~i~~~~~ 151 (354)
T PLN02578 116 ----------------------------------------YALDLLGFGWSDKAL-I--EY-DAMVWRDQVADFVKEVVK 151 (354)
T ss_pred ----------------------------------------EEECCCCCCCCCCcc-c--cc-CHHHHHHHHHHHHHHhcc
Confidence 999999999765432 1 33 899999999999999999
Q ss_pred CcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 191 HSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 191 ~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
++++++||||||+||+.+|.++|++|++
T Consensus 152 ~~~~lvG~S~Gg~ia~~~A~~~p~~v~~ 179 (354)
T PLN02578 152 EPAVLVGNSLGGFTALSTAVGYPELVAG 179 (354)
T ss_pred CCeEEEEECHHHHHHHHHHHhChHhcce
Confidence 9999999999999999999999999875
No 24
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.74 E-value=2.8e-17 Score=147.30 Aligned_cols=118 Identities=21% Similarity=0.279 Sum_probs=90.9
Q ss_pred ceeEEEEeCCc-cEEEEEecC---CCCCEEEEeCCCCCChhhhhhcccChhhHHHhhc-cceEEEecCCCCCCCCCCccc
Q psy5044 26 VEEVYVETDRG-SILVAVAGN---RGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLE-NFSVYHVNAPGQEEGAQPLAD 100 (219)
Q Consensus 26 ~~e~~i~t~~g-~~~v~~~G~---~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~-~~~v~hv~~pG~~~~a~~l~~ 100 (219)
.+|..+.+++| .++++..++ ..+|+||++|++|.+...+|. +.++.|.+ .|+|
T Consensus 61 ~~~~~~~~~~g~~l~~~~~~p~~~~~~~~iv~lHG~~~~~~~~~~-----~~~~~l~~~g~~v----------------- 118 (349)
T PLN02385 61 TEESYEVNSRGVEIFSKSWLPENSRPKAAVCFCHGYGDTCTFFFE-----GIARKIASSGYGV----------------- 118 (349)
T ss_pred eeeeeEEcCCCCEEEEEEEecCCCCCCeEEEEECCCCCccchHHH-----HHHHHHHhCCCEE-----------------
Confidence 35555666666 788888774 346899999999988654454 33445543 3665
Q ss_pred ccccchhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy5044 101 DVTQHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQ 180 (219)
Q Consensus 101 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~d 180 (219)
+++|+||||+|.. +.++ .+++++++++
T Consensus 119 --------------------------------------------------~~~D~~G~G~S~~--~~~~-~~~~~~~~~d 145 (349)
T PLN02385 119 --------------------------------------------------FAMDYPGFGLSEG--LHGY-IPSFDDLVDD 145 (349)
T ss_pred --------------------------------------------------EEecCCCCCCCCC--CCCC-cCCHHHHHHH
Confidence 9999999987653 2232 2489999999
Q ss_pred HHHHHhhhCCC------cEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 181 LLFVLSYFGLH------SVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 181 L~~lLd~LgI~------~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+.++++.++.+ +++++||||||+|++.+|.++|+++++
T Consensus 146 v~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~g 189 (349)
T PLN02385 146 VIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDG 189 (349)
T ss_pred HHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhh
Confidence 99999998764 799999999999999999999999875
No 25
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.73 E-value=1.9e-17 Score=148.79 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=59.6
Q ss_pred hcCceEEEEcCCC--CCCCCCC--CCCC------CCCCCHHHHHHHHHHHHhhhCCCc-EEEEEEcHHHHHHHHHHHhCc
Q psy5044 145 LENFSVYHVNAPG--QEEGAQP--LADD------YIYPTMDELSNQLLFVLSYFGLHS-VIGLGVGAGGNILARFALSHL 213 (219)
Q Consensus 145 ~~~~rvIavDlpG--HG~s~s~--~~~~------~~~~Smd~lA~dL~~lLd~LgI~~-~~lvG~SmGG~IAl~fA~~~P 213 (219)
+++|+||++|+|| ||.+..+ .+.+ ...+|++++++++.++++++++++ ++++||||||+|++.+|.+||
T Consensus 70 ~~~~~vi~~D~~G~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~G~S~Gg~ia~~~a~~~p 149 (351)
T TIGR01392 70 TDRYFVVCSNVLGGCYGSTGPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHLGIEQIAAVVGGSMGGMQALEWAIDYP 149 (351)
T ss_pred CCceEEEEecCCCCCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHCh
Confidence 5667779999999 4433211 0111 112499999999999999999999 999999999999999999999
Q ss_pred CcccC
Q psy5044 214 WYCSL 218 (219)
Q Consensus 214 ~RV~~ 218 (219)
++|++
T Consensus 150 ~~v~~ 154 (351)
T TIGR01392 150 ERVRA 154 (351)
T ss_pred Hhhhe
Confidence 99875
No 26
>KOG4178|consensus
Probab=99.72 E-value=7.1e-17 Score=147.91 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=96.8
Q ss_pred CCceeEEEEeCCccEEEEEecCCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCcccccc
Q psy5044 24 PTVEEVYVETDRGSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDVT 103 (219)
Q Consensus 24 ~~~~e~~i~t~~g~~~v~~~G~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~~ 103 (219)
...+...+.+.+-.+|+...|++++|.||++|++--+.-+ |. -++..
T Consensus 20 ~~~~hk~~~~~gI~~h~~e~g~~~gP~illlHGfPe~wys-wr-----~q~~~--------------------------- 66 (322)
T KOG4178|consen 20 SAISHKFVTYKGIRLHYVEGGPGDGPIVLLLHGFPESWYS-WR-----HQIPG--------------------------- 66 (322)
T ss_pred hhcceeeEEEccEEEEEEeecCCCCCEEEEEccCCccchh-hh-----hhhhh---------------------------
Confidence 3445556666666889999999999999999999866544 32 23444
Q ss_pred cchhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcC-ceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy5044 104 QHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLEN-FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLL 182 (219)
Q Consensus 104 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~-~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~ 182 (219)
|++. +||||+|+||.|.|+++..-. . +|++.+++++.
T Consensus 67 ----------------------------------------la~~~~rviA~DlrGyG~Sd~P~~~~-~-Yt~~~l~~di~ 104 (322)
T KOG4178|consen 67 ----------------------------------------LASRGYRVIAPDLRGYGFSDAPPHIS-E-YTIDELVGDIV 104 (322)
T ss_pred ----------------------------------------hhhcceEEEecCCCCCCCCCCCCCcc-e-eeHHHHHHHHH
Confidence 4444 566999999999877654421 3 49999999999
Q ss_pred HHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 183 FVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 183 ~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
.+|++||.++++++||+|||+||.++|+.||+||++
T Consensus 105 ~lld~Lg~~k~~lvgHDwGaivaw~la~~~Perv~~ 140 (322)
T KOG4178|consen 105 ALLDHLGLKKAFLVGHDWGAIVAWRLALFYPERVDG 140 (322)
T ss_pred HHHHHhccceeEEEeccchhHHHHHHHHhChhhcce
Confidence 999999999999999999999999999999999986
No 27
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.72 E-value=5.3e-17 Score=127.94 Aligned_cols=67 Identities=24% Similarity=0.318 Sum_probs=58.4
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 150 VYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 150 vIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
|+++|+||||.|..+.. +...++++.++++.+++++++.++++++||||||++++.+|.++|++|++
T Consensus 27 v~~~d~~G~G~s~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~ 93 (228)
T PF12697_consen 27 VIAFDLPGHGRSDPPPD--YSPYSIEDYAEDLAELLDALGIKKVILVGHSMGGMIALRLAARYPDRVKG 93 (228)
T ss_dssp EEEEECTTSTTSSSHSS--GSGGSHHHHHHHHHHHHHHTTTSSEEEEEETHHHHHHHHHHHHSGGGEEE
T ss_pred EEEEecCCccccccccc--cCCcchhhhhhhhhhccccccccccccccccccccccccccccccccccc
Confidence 39999999987654321 12349999999999999999999999999999999999999999999875
No 28
>PRK05855 short chain dehydrogenase; Validated
Probab=99.70 E-value=1.7e-16 Score=147.58 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=87.6
Q ss_pred eEEEEeCCccEEEEEecCCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCcccccccchh
Q psy5044 28 EVYVETDRGSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDVTQHPL 107 (219)
Q Consensus 28 e~~i~t~~g~~~v~~~G~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~~~~~~ 107 (219)
++.+..++..+++...|+.++|+||++|+++.+... |. +....|.++|+|
T Consensus 5 ~~~~~~~g~~l~~~~~g~~~~~~ivllHG~~~~~~~-w~-----~~~~~L~~~~~V------------------------ 54 (582)
T PRK05855 5 RTVVSSDGVRLAVYEWGDPDRPTVVLVHGYPDNHEV-WD-----GVAPLLADRFRV------------------------ 54 (582)
T ss_pred EEEEeeCCEEEEEEEcCCCCCCeEEEEcCCCchHHH-HH-----HHHHHhhcceEE------------------------
Confidence 455566667999999998788999999999988764 54 445555555655
Q ss_pred hHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q psy5044 108 ALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSY 187 (219)
Q Consensus 108 ~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~ 187 (219)
+++|+||||.|..+.+.. .+|++++|+|+.+++++
T Consensus 55 -------------------------------------------i~~D~~G~G~S~~~~~~~--~~~~~~~a~dl~~~i~~ 89 (582)
T PRK05855 55 -------------------------------------------VAYDVRGAGRSSAPKRTA--AYTLARLADDFAAVIDA 89 (582)
T ss_pred -------------------------------------------EEecCCCCCCCCCCCccc--ccCHHHHHHHHHHHHHH
Confidence 999999999775432221 23999999999999999
Q ss_pred hCCCc-EEEEEEcHHHHHHHHHHHh
Q psy5044 188 FGLHS-VIGLGVGAGGNILARFALS 211 (219)
Q Consensus 188 LgI~~-~~lvG~SmGG~IAl~fA~~ 211 (219)
+++++ ++++||||||++++.++.+
T Consensus 90 l~~~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 90 VSPDRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred hCCCCcEEEEecChHHHHHHHHHhC
Confidence 99977 9999999999999998876
No 29
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.70 E-value=2.1e-16 Score=139.03 Aligned_cols=70 Identities=11% Similarity=0.095 Sum_probs=59.4
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 147 NFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 147 ~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
.|+||++|+||||+|..+.. .+. .+++++++++.++++++++++++++||||||+|++.+|.+||++|++
T Consensus 53 ~~~vi~~D~~G~G~S~~~~~-~~~-~~~~~~~~dl~~l~~~l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~ 122 (306)
T TIGR01249 53 TYRIVLFDQRGCGKSTPHAC-LEE-NTTWDLVADIEKLREKLGIKNWLVFGGSWGSTLALAYAQTHPEVVTG 122 (306)
T ss_pred CCEEEEECCCCCCCCCCCCC-ccc-CCHHHHHHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHHChHhhhh
Confidence 45669999999997753321 112 38999999999999999999999999999999999999999999874
No 30
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.70 E-value=2e-16 Score=139.79 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=56.4
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCC------cEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 148 FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLH------SVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~------~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
|+|+++|+||||+|.. +.++ .++++++++|+.++++.+..+ +++++||||||++++.+|.++|++|++
T Consensus 88 y~V~~~D~rGhG~S~~--~~~~-~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~ 161 (330)
T PLN02298 88 FACFALDLEGHGRSEG--LRAY-VPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDG 161 (330)
T ss_pred CEEEEecCCCCCCCCC--cccc-CCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCccccee
Confidence 3449999999997643 2232 358999999999999998653 699999999999999999999999875
No 31
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.69 E-value=1.3e-16 Score=145.77 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=59.4
Q ss_pred hcCceEEEEcCCCC-CCCCCCC---CC-------CCCCCCHHHHHHHHHHHHhhhCCCc-EEEEEEcHHHHHHHHHHHhC
Q psy5044 145 LENFSVYHVNAPGQ-EEGAQPL---AD-------DYIYPTMDELSNQLLFVLSYFGLHS-VIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 145 ~~~~rvIavDlpGH-G~s~s~~---~~-------~~~~~Smd~lA~dL~~lLd~LgI~~-~~lvG~SmGG~IAl~fA~~~ 212 (219)
+++|+||++|+||+ |+++.+. +. +++.+|++++|+++.++++++++++ ++++||||||+|++.+|.+|
T Consensus 89 ~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~~ 168 (379)
T PRK00175 89 TDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVITIRDWVRAQARLLDALGITRLAAVVGGSMGGMQALEWAIDY 168 (379)
T ss_pred ccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHHHHhC
Confidence 67788899999994 4332211 10 1112499999999999999999999 59999999999999999999
Q ss_pred cCcccC
Q psy5044 213 LWYCSL 218 (219)
Q Consensus 213 P~RV~~ 218 (219)
|+||++
T Consensus 169 p~~v~~ 174 (379)
T PRK00175 169 PDRVRS 174 (379)
T ss_pred hHhhhE
Confidence 999875
No 32
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.68 E-value=4e-16 Score=137.92 Aligned_cols=113 Identities=16% Similarity=0.216 Sum_probs=90.9
Q ss_pred EEEEeCCccEEEEEecCCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCcccccccchhh
Q psy5044 29 VYVETDRGSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDVTQHPLA 108 (219)
Q Consensus 29 ~~i~t~~g~~~v~~~G~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~~~~~~~ 108 (219)
..+......+++...|++++|+||++|++|.+... |. ..+..|.+.|+|
T Consensus 112 ~~~~~~~~~i~~~~~g~~~~~~vl~~HG~~~~~~~-~~-----~~~~~l~~~~~v------------------------- 160 (371)
T PRK14875 112 RKARIGGRTVRYLRLGEGDGTPVVLIHGFGGDLNN-WL-----FNHAALAAGRPV------------------------- 160 (371)
T ss_pred CcceEcCcEEEEecccCCCCCeEEEECCCCCccch-HH-----HHHHHHhcCCEE-------------------------
Confidence 34555566788888887788999999999998765 43 334445444555
Q ss_pred HHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q psy5044 109 LLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYF 188 (219)
Q Consensus 109 ~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~L 188 (219)
+++|+||||.+... + ...+++++++++.++++++
T Consensus 161 ------------------------------------------~~~d~~g~G~s~~~-~---~~~~~~~~~~~~~~~~~~~ 194 (371)
T PRK14875 161 ------------------------------------------IALDLPGHGASSKA-V---GAGSLDELAAAVLAFLDAL 194 (371)
T ss_pred ------------------------------------------EEEcCCCCCCCCCC-C---CCCCHHHHHHHHHHHHHhc
Confidence 99999999876432 1 1248999999999999999
Q ss_pred CCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 189 GLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 189 gI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+.++++++||||||++|+.+|.++|+++++
T Consensus 195 ~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~ 224 (371)
T PRK14875 195 GIERAHLVGHSMGGAVALRLAARAPQRVAS 224 (371)
T ss_pred CCccEEEEeechHHHHHHHHHHhCchheeE
Confidence 999999999999999999999999998874
No 33
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.67 E-value=3.4e-16 Score=137.08 Aligned_cols=67 Identities=24% Similarity=0.186 Sum_probs=56.6
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhC-CCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 149 SVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFG-LHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~Lg-I~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+|+++|+||||++.+. +. ...|++++++++.+++++++ .++++++||||||++++.+|.++|++|++
T Consensus 47 ~vi~~dl~g~G~s~~~-~~--~~~~~~~~~~~l~~~i~~l~~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~ 114 (273)
T PLN02211 47 KVTCIDLKSAGIDQSD-AD--SVTTFDEYNKPLIDFLSSLPENEKVILVGHSAGGLSVTQAIHRFPKKICL 114 (273)
T ss_pred EEEEecccCCCCCCCC-cc--cCCCHHHHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHhChhheeE
Confidence 3399999999865322 21 22499999999999999995 68999999999999999999999999875
No 34
>PRK10749 lysophospholipase L2; Provisional
Probab=99.67 E-value=1.3e-15 Score=136.13 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=58.0
Q ss_pred ceEEEEcCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHhhh----CCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 148 FSVYHVNAPGQEEGAQPLADDY--IYPTMDELSNQLLFVLSYF----GLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~~~~--~~~Smd~lA~dL~~lLd~L----gI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
|+|+++|+||||.|..+.+... ...+++++++++.++++++ +..+++++||||||+|++.+|.++|+++++
T Consensus 82 ~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~ 158 (330)
T PRK10749 82 YDVLIIDHRGQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQRHPGVFDA 158 (330)
T ss_pred CeEEEEcCCCCCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHhCCCCcce
Confidence 3449999999997754322110 1148999999999999987 778999999999999999999999999875
No 35
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.67 E-value=2.9e-16 Score=126.12 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=50.3
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 149 SVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+||++|+||||.|.. .. ..+++++++++.++++ ++++++||||||++++.+|.++|+++++
T Consensus 32 ~vi~~d~~G~G~s~~--~~---~~~~~~~~~~~~~~~~----~~~~lvG~S~Gg~~a~~~a~~~p~~v~~ 92 (245)
T TIGR01738 32 TLHLVDLPGHGRSRG--FG---PLSLADAAEAIAAQAP----DPAIWLGWSLGGLVALHIAATHPDRVRA 92 (245)
T ss_pred EEEEecCCcCccCCC--CC---CcCHHHHHHHHHHhCC----CCeEEEEEcHHHHHHHHHHHHCHHhhhe
Confidence 349999999987542 21 2389999998887653 7999999999999999999999998875
No 36
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.65 E-value=1.2e-15 Score=121.99 Aligned_cols=69 Identities=22% Similarity=0.352 Sum_probs=58.0
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 148 FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQ-LLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~d-L~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
++|+++|+||||.+..+ ..+...++++++++ +.+++++++.++++++||||||++|+.+|.++|++|++
T Consensus 28 ~~v~~~d~~g~G~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~ 97 (251)
T TIGR03695 28 FRCLAIDLPGHGSSQSP--DEIERYDFEEAAQDILATLLDQLGIEPFFLVGYSMGGRIALYYALQYPERVQG 97 (251)
T ss_pred CeEEEEcCCCCCCCCCC--CccChhhHHHHHHHHHHHHHHHcCCCeEEEEEeccHHHHHHHHHHhCchheee
Confidence 34499999999876543 22223589999999 88899999999999999999999999999999998764
No 37
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.62 E-value=3e-15 Score=138.75 Aligned_cols=103 Identities=19% Similarity=0.246 Sum_probs=78.9
Q ss_pred EEEecCCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCcccccccchhhHHHHHHhcCcc
Q psy5044 40 VAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDVTQHPLALLMIIRHYGMD 119 (219)
Q Consensus 40 v~~~G~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~~~~~~~~~~v~~~~~~~ 119 (219)
+++.|++++|+||++|++|.+... |. +.+..|.++|+|
T Consensus 97 ~~~~~~~~~p~vvllHG~~~~~~~-~~-----~~~~~L~~~~~v------------------------------------ 134 (402)
T PLN02894 97 VTFDSKEDAPTLVMVHGYGASQGF-FF-----RNFDALASRFRV------------------------------------ 134 (402)
T ss_pred EEecCCCCCCEEEEECCCCcchhH-HH-----HHHHHHHhCCEE------------------------------------
Confidence 344566788999999999988764 33 345555555666
Q ss_pred ccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHhhhCCCcEEE
Q psy5044 120 ICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPT----MDELSNQLLFVLSYFGLHSVIG 195 (219)
Q Consensus 120 ~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~S----md~lA~dL~~lLd~LgI~~~~l 195 (219)
+++|+||||+|..+. +.+-+ .+.+++++.++++.++++++++
T Consensus 135 -------------------------------i~~D~rG~G~S~~~~---~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~l 180 (402)
T PLN02894 135 -------------------------------IAIDQLGWGGSSRPD---FTCKSTEETEAWFIDSFEEWRKAKNLSNFIL 180 (402)
T ss_pred -------------------------------EEECCCCCCCCCCCC---cccccHHHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 999999999765321 11112 2346778889999999999999
Q ss_pred EEEcHHHHHHHHHHHhCcCcccC
Q psy5044 196 LGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 196 vG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+||||||++|+.+|.++|++|++
T Consensus 181 vGhS~GG~la~~~a~~~p~~v~~ 203 (402)
T PLN02894 181 LGHSFGGYVAAKYALKHPEHVQH 203 (402)
T ss_pred EEECHHHHHHHHHHHhCchhhcE
Confidence 99999999999999999999874
No 38
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.62 E-value=4.3e-15 Score=158.70 Aligned_cols=126 Identities=13% Similarity=0.089 Sum_probs=96.6
Q ss_pred cccCCCCceeEEEEeCCcc----EEEEEecC-CCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCC
Q psy5044 19 LARTDPTVEEVYVETDRGS----ILVAVAGN-RGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEE 93 (219)
Q Consensus 19 ~~~~~~~~~e~~i~t~~g~----~~v~~~G~-~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~ 93 (219)
+-+...++..+.|..+.+. +++...|+ .++|+||++|++|.+..+ |. +.+..|.++|+|
T Consensus 1337 ~~~~~~~l~~~~~~v~~~~~~~~i~~~~~G~~~~~~~vVllHG~~~s~~~-w~-----~~~~~L~~~~rV---------- 1400 (1655)
T PLN02980 1337 RTFKEEQVRTYELRVDVDGFSCLIKVHEVGQNAEGSVVLFLHGFLGTGED-WI-----PIMKAISGSARC---------- 1400 (1655)
T ss_pred HHhccCCCceEEEEEccCceEEEEEEEecCCCCCCCeEEEECCCCCCHHH-HH-----HHHHHHhCCCEE----------
Confidence 3444566777777665433 34444563 457899999999999876 54 456666656666
Q ss_pred CCCCcccccccchhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCC-----CC
Q psy5044 94 GAQPLADDVTQHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLA-----DD 168 (219)
Q Consensus 94 ~a~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~-----~~ 168 (219)
|++|+||||++..... ..
T Consensus 1401 ---------------------------------------------------------i~~Dl~G~G~S~~~~~~~~~~~~ 1423 (1655)
T PLN02980 1401 ---------------------------------------------------------ISIDLPGHGGSKIQNHAKETQTE 1423 (1655)
T ss_pred ---------------------------------------------------------EEEcCCCCCCCCCcccccccccc
Confidence 9999999997653211 11
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 169 YIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 169 ~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
...+++++|+++.++++++++++++++||||||+||+.+|.+||++|++
T Consensus 1424 -~~~si~~~a~~l~~ll~~l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~ 1472 (1655)
T PLN02980 1424 -PTLSVELVADLLYKLIEHITPGKVTLVGYSMGARIALYMALRFSDKIEG 1472 (1655)
T ss_pred -ccCCHHHHHHHHHHHHHHhCCCCEEEEEECHHHHHHHHHHHhChHhhCE
Confidence 1248999999999999999999999999999999999999999999875
No 39
>KOG4409|consensus
Probab=99.60 E-value=3.5e-15 Score=138.24 Aligned_cols=100 Identities=20% Similarity=0.246 Sum_probs=81.5
Q ss_pred CCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCcccccccchhhHHHHHHhcCccccccC
Q psy5044 45 NRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDVTQHPLALLMIIRHYGMDICYDT 124 (219)
Q Consensus 45 ~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 124 (219)
+.++++||++||+|.....++. .+..|...++|
T Consensus 87 ~~~~~plVliHGyGAg~g~f~~------Nf~~La~~~~v----------------------------------------- 119 (365)
T KOG4409|consen 87 SANKTPLVLIHGYGAGLGLFFR------NFDDLAKIRNV----------------------------------------- 119 (365)
T ss_pred ccCCCcEEEEeccchhHHHHHH------hhhhhhhcCce-----------------------------------------
Confidence 4789999999999999876553 44455555666
Q ss_pred CCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHH
Q psy5044 125 DHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPL-ADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGN 203 (219)
Q Consensus 125 ~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~-~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~ 203 (219)
+++|+||+|+|+.|. +-+. ..-.+.+.+-|.++-.+.||++.+++|||+|||
T Consensus 120 --------------------------yaiDllG~G~SSRP~F~~d~-~~~e~~fvesiE~WR~~~~L~KmilvGHSfGGY 172 (365)
T KOG4409|consen 120 --------------------------YAIDLLGFGRSSRPKFSIDP-TTAEKEFVESIEQWRKKMGLEKMILVGHSFGGY 172 (365)
T ss_pred --------------------------EEecccCCCCCCCCCCCCCc-ccchHHHHHHHHHHHHHcCCcceeEeeccchHH
Confidence 999999999876532 2221 124568999999999999999999999999999
Q ss_pred HHHHHHHhCcCcccC
Q psy5044 204 ILARFALSHLWYCSL 218 (219)
Q Consensus 204 IAl~fA~~~P~RV~~ 218 (219)
+|..||++||+||+.
T Consensus 173 Laa~YAlKyPerV~k 187 (365)
T KOG4409|consen 173 LAAKYALKYPERVEK 187 (365)
T ss_pred HHHHHHHhChHhhce
Confidence 999999999999974
No 40
>PHA02857 monoglyceride lipase; Provisional
Probab=99.58 E-value=2.5e-14 Score=122.17 Aligned_cols=67 Identities=12% Similarity=0.060 Sum_probs=50.5
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh----CCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 149 SVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYF----GLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~L----gI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+|+++|+||||.|... .+...++.++++++.+.++.+ ..++++++||||||+||+.+|.++|+++++
T Consensus 54 ~via~D~~G~G~S~~~---~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~ 124 (276)
T PHA02857 54 LVFSHDHIGHGRSNGE---KMMIDDFGVYVRDVVQHVVTIKSTYPGVPVFLLGHSMGATISILAAYKNPNLFTA 124 (276)
T ss_pred EEEEccCCCCCCCCCc---cCCcCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHhCccccce
Confidence 3499999999876431 112235566666666666553 346899999999999999999999999875
No 41
>KOG1454|consensus
Probab=99.57 E-value=1.8e-14 Score=131.36 Aligned_cols=123 Identities=20% Similarity=0.198 Sum_probs=97.5
Q ss_pred CCCceeEEEEeCCc--cEEEEEecCC---------CCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCC
Q psy5044 23 DPTVEEVYVETDRG--SILVAVAGNR---------GKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQ 91 (219)
Q Consensus 23 ~~~~~e~~i~t~~g--~~~v~~~G~~---------~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~ 91 (219)
-.+..+..++-+.| .......|+. ++|+||++||+|.|..+ |. ..|..|..++.
T Consensus 22 ~~~~~~~~i~~~~g~~~~~~~w~~~~~~~~~~~~~~~~pvlllHGF~~~~~~-w~-----~~~~~L~~~~~--------- 86 (326)
T KOG1454|consen 22 FVTLRSTSIEIPWGPLTIRSKWIPNLDKYGSPGDKDKPPVLLLHGFGASSFS-WR-----RVVPLLSKAKG--------- 86 (326)
T ss_pred eccccceEEEcccCCceeEEEEeccceeccCCCCCCCCcEEEeccccCCccc-Hh-----hhccccccccc---------
Confidence 34677888888888 7777777755 79999999999997654 54 33444444311
Q ss_pred CCCCCCcccccccchhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCC
Q psy5044 92 EEGAQPLADDVTQHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIY 171 (219)
Q Consensus 92 ~~~a~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~ 171 (219)
++|+++|+||||.+ +..+.+ ..
T Consensus 87 --------------------------------------------------------~~v~aiDl~G~g~~-s~~~~~-~~ 108 (326)
T KOG1454|consen 87 --------------------------------------------------------LRVLAIDLPGHGYS-SPLPRG-PL 108 (326)
T ss_pred --------------------------------------------------------eEEEEEecCCCCcC-CCCCCC-Cc
Confidence 46699999999843 334444 33
Q ss_pred CCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 172 PTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 172 ~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+++.+.++.+.+++...+.++++++||||||++|+.+|+.||+.|++
T Consensus 109 y~~~~~v~~i~~~~~~~~~~~~~lvghS~Gg~va~~~Aa~~P~~V~~ 155 (326)
T KOG1454|consen 109 YTLRELVELIRRFVKEVFVEPVSLVGHSLGGIVALKAAAYYPETVDS 155 (326)
T ss_pred eehhHHHHHHHHHHHhhcCcceEEEEeCcHHHHHHHHHHhCcccccc
Confidence 59999999999999999999999999999999999999999999975
No 42
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.52 E-value=3.1e-14 Score=114.97 Aligned_cols=69 Identities=17% Similarity=0.122 Sum_probs=60.8
Q ss_pred ceEEEEcCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 148 FSVYHVNAPGQEEGAQP--LADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~--~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
|+||++|+||+|.|++. ... ...+++++++++..+++++++++++++||||||++++.||.+||+||++
T Consensus 1 f~vi~~d~rG~g~S~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~ 71 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHWDPDF--PDYTTDDLAADLEALREALGIKKINLVGHSMGGMLALEYAAQYPERVKK 71 (230)
T ss_dssp EEEEEEECTTSTTSSSCCGSGS--CTHCHHHHHHHHHHHHHHHTTSSEEEEEETHHHHHHHHHHHHSGGGEEE
T ss_pred CEEEEEeCCCCCCCCCCccCCc--ccccHHHHHHHHHHHHHHhCCCCeEEEEECCChHHHHHHHHHCchhhcC
Confidence 68999999999987630 222 3349999999999999999999999999999999999999999999975
No 43
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.46 E-value=1.2e-12 Score=116.77 Aligned_cols=67 Identities=19% Similarity=0.147 Sum_probs=52.9
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---HHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 148 FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLF---VLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~---lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
|+|+++|+||||.|..... ..+.+++++|+.+ +|++.++++++++|+||||.+++.+|.++|+++++
T Consensus 57 y~Vl~~Dl~G~G~S~g~~~----~~~~~~~~~Dv~~ai~~L~~~~~~~v~LvG~SmGG~vAl~~A~~~p~~v~~ 126 (266)
T TIGR03101 57 FGVLQIDLYGCGDSAGDFA----AARWDVWKEDVAAAYRWLIEQGHPPVTLWGLRLGALLALDAANPLAAKCNR 126 (266)
T ss_pred CEEEEECCCCCCCCCCccc----cCCHHHHHHHHHHHHHHHHhcCCCCEEEEEECHHHHHHHHHHHhCccccce
Confidence 3449999999987643221 1267888888766 45666889999999999999999999999998863
No 44
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.42 E-value=1e-12 Score=122.49 Aligned_cols=73 Identities=12% Similarity=0.138 Sum_probs=59.9
Q ss_pred cCceEEEEcCCCCCCCCCCC----------C-------CCCCCCCHHHHHHHHHHHHhhhCCCcEE-EEEEcHHHHHHHH
Q psy5044 146 ENFSVYHVNAPGQEEGAQPL----------A-------DDYIYPTMDELSNQLLFVLSYFGLHSVI-GLGVGAGGNILAR 207 (219)
Q Consensus 146 ~~~rvIavDlpGHG~s~s~~----------~-------~~~~~~Smd~lA~dL~~lLd~LgI~~~~-lvG~SmGG~IAl~ 207 (219)
++|.||++|..|-|.|++|. | .+++.+|++++|+++.++|+++||++++ ++|+||||++|++
T Consensus 98 ~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~lgi~~~~~vvG~SmGG~ial~ 177 (389)
T PRK06765 98 NKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSLGIARLHAVMGPSMGGMQAQE 177 (389)
T ss_pred CceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHH
Confidence 46777999999887543220 1 1233359999999999999999999997 9999999999999
Q ss_pred HHHhCcCcccC
Q psy5044 208 FALSHLWYCSL 218 (219)
Q Consensus 208 fA~~~P~RV~~ 218 (219)
+|.+||++|+.
T Consensus 178 ~a~~~P~~v~~ 188 (389)
T PRK06765 178 WAVHYPHMVER 188 (389)
T ss_pred HHHHChHhhhe
Confidence 99999999975
No 45
>PLN02511 hydrolase
Probab=99.41 E-value=4.6e-12 Score=116.91 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=51.6
Q ss_pred cCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCC----CcEEEEEEcHHHHHHHHHHHhCcCc
Q psy5044 146 ENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGL----HSVIGLGVGAGGNILARFALSHLWY 215 (219)
Q Consensus 146 ~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI----~~~~lvG~SmGG~IAl~fA~~~P~R 215 (219)
..++||++|+||||++....+ ++ .....++|+.+++++++. .+++++|+||||+|++.|+.++|++
T Consensus 128 ~g~~vv~~d~rG~G~s~~~~~---~~-~~~~~~~Dl~~~i~~l~~~~~~~~~~lvG~SlGg~i~~~yl~~~~~~ 197 (388)
T PLN02511 128 KGWRVVVFNSRGCADSPVTTP---QF-YSASFTGDLRQVVDHVAGRYPSANLYAAGWSLGANILVNYLGEEGEN 197 (388)
T ss_pred CCCEEEEEecCCCCCCCCCCc---CE-EcCCchHHHHHHHHHHHHHCCCCCEEEEEechhHHHHHHHHHhcCCC
Confidence 344459999999987653222 12 235677788888888876 5899999999999999999999987
No 46
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.41 E-value=4.1e-12 Score=118.88 Aligned_cols=122 Identities=15% Similarity=0.104 Sum_probs=88.0
Q ss_pred cCCCCceeEEEEeCCc-cEEEEEec---CCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhcc-ceEEEecCCCCCCCC
Q psy5044 21 RTDPTVEEVYVETDRG-SILVAVAG---NRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLEN-FSVYHVNAPGQEEGA 95 (219)
Q Consensus 21 ~~~~~~~e~~i~t~~g-~~~v~~~G---~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~-~~v~hv~~pG~~~~a 95 (219)
..+..+++..|.++.| .+..++.- ++.+|+||+.|+++.+....|. ...+.+.++ |+|
T Consensus 163 ~~~~~~e~v~i~~~~g~~l~g~l~~P~~~~~~P~Vli~gG~~~~~~~~~~-----~~~~~La~~Gy~v------------ 225 (414)
T PRK05077 163 RLPGELKELEFPIPGGGPITGFLHLPKGDGPFPTVLVCGGLDSLQTDYYR-----LFRDYLAPRGIAM------------ 225 (414)
T ss_pred hcCCceEEEEEEcCCCcEEEEEEEECCCCCCccEEEEeCCcccchhhhHH-----HHHHHHHhCCCEE------------
Confidence 3456789999999888 77777653 3567899999998865433343 223445443 666
Q ss_pred CCcccccccchhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHH
Q psy5044 96 QPLADDVTQHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMD 175 (219)
Q Consensus 96 ~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd 175 (219)
+++|+||||++.. .+. . ..+.
T Consensus 226 -------------------------------------------------------l~~D~pG~G~s~~-~~~--~-~d~~ 246 (414)
T PRK05077 226 -------------------------------------------------------LTIDMPSVGFSSK-WKL--T-QDSS 246 (414)
T ss_pred -------------------------------------------------------EEECCCCCCCCCC-CCc--c-ccHH
Confidence 9999999987643 111 1 2456
Q ss_pred HHHHHHHHHHhhh---CCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 176 ELSNQLLFVLSYF---GLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 176 ~lA~dL~~lLd~L---gI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
.+...+.+.|... +.+++.++|+||||++|+++|..+|+|+++
T Consensus 247 ~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a 292 (414)
T PRK05077 247 LLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKA 292 (414)
T ss_pred HHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceE
Confidence 6666677777665 668999999999999999999999999875
No 47
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.38 E-value=6.5e-12 Score=98.03 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=55.7
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 148 FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
++++++|+||||.+. .. ..++..+++++..+++++++++++++||||||++++.+|.++|+++++
T Consensus 51 ~~~~~~d~~g~g~s~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~ 115 (282)
T COG0596 51 YRVIAPDLRGHGRSD-PA-----GYSLSAYADDLAALLDALGLEKVVLVGHSMGGAVALALALRHPDRVRG 115 (282)
T ss_pred eEEEEecccCCCCCC-cc-----cccHHHHHHHHHHHHHHhCCCceEEEEecccHHHHHHHHHhcchhhhe
Confidence 455999999998765 11 125667799999999999999999999999999999999999998875
No 48
>PRK11071 esterase YqiA; Provisional
Probab=99.37 E-value=2.1e-12 Score=108.42 Aligned_cols=54 Identities=11% Similarity=0.091 Sum_probs=48.0
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCc
Q psy5044 147 NFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWY 215 (219)
Q Consensus 147 ~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~R 215 (219)
.++|+++|+|||+ +++++++.++++++++++++++|+||||++|+.+|.++|.+
T Consensus 32 ~~~v~~~dl~g~~---------------~~~~~~l~~l~~~~~~~~~~lvG~S~Gg~~a~~~a~~~~~~ 85 (190)
T PRK11071 32 DIEMIVPQLPPYP---------------ADAAELLESLVLEHGGDPLGLVGSSLGGYYATWLSQCFMLP 85 (190)
T ss_pred CCeEEeCCCCCCH---------------HHHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHHcCCC
Confidence 3455999999983 46788999999999999999999999999999999999954
No 49
>PLN02872 triacylglycerol lipase
Probab=99.36 E-value=5.9e-12 Score=117.77 Aligned_cols=125 Identities=16% Similarity=0.179 Sum_probs=84.3
Q ss_pred cCCCCceeEEEEeCCc-cEEEEEe-------cCCCCCEEEEeCCCCCChhhhhhcccChh--hHH-HhhccceEEEecCC
Q psy5044 21 RTDPTVEEVYVETDRG-SILVAVA-------GNRGKPAILTYHDLGLNYISNFQAFFNFS--DMR-SLLENFSVYHVNAP 89 (219)
Q Consensus 21 ~~~~~~~e~~i~t~~g-~~~v~~~-------G~~~~p~il~~Hd~G~n~~~~~~~~~~~~--~~~-~l~~~~~v~hv~~p 89 (219)
+....+|+|.|.|++| .|.+... |+.++|++|++|+++.+..+ |. ++.| .++ .|.+
T Consensus 39 ~~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~-w~--~~~~~~sla~~La~---------- 105 (395)
T PLN02872 39 PAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDA-WF--LNSPEQSLGFILAD---------- 105 (395)
T ss_pred HcCCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccc-ee--ecCcccchHHHHHh----------
Confidence 3457799999999999 4444332 12357999999999988765 42 1212 111 1222
Q ss_pred CCCCCCCCcccccccchhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCC-----C
Q psy5044 90 GQEEGAQPLADDVTQHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQ-----P 164 (219)
Q Consensus 90 G~~~~a~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s-----~ 164 (219)
+.|+|+.+|.||++.+.. +
T Consensus 106 --------------------------------------------------------~GydV~l~n~RG~~~s~gh~~~~~ 129 (395)
T PLN02872 106 --------------------------------------------------------HGFDVWVGNVRGTRWSYGHVTLSE 129 (395)
T ss_pred --------------------------------------------------------CCCCcccccccccccccCCCCCCc
Confidence 234559999999874321 1
Q ss_pred CCCCCCCCCHHHHH-HHHHHHHhhh---CCCcEEEEEEcHHHHHHHHHHHhCcCc
Q psy5044 165 LADDYIYPTMDELS-NQLLFVLSYF---GLHSVIGLGVGAGGNILARFALSHLWY 215 (219)
Q Consensus 165 ~~~~~~~~Smd~lA-~dL~~lLd~L---gI~~~~lvG~SmGG~IAl~fA~~~P~R 215 (219)
.+..+-..|++++| .|+.++++++ ..++++++||||||++++.++ .+|+.
T Consensus 130 ~~~~fw~~s~~e~a~~Dl~a~id~i~~~~~~~v~~VGhS~Gg~~~~~~~-~~p~~ 183 (395)
T PLN02872 130 KDKEFWDWSWQELALYDLAEMIHYVYSITNSKIFIVGHSQGTIMSLAAL-TQPNV 183 (395)
T ss_pred cchhccCCcHHHHHHHHHHHHHHHHHhccCCceEEEEECHHHHHHHHHh-hChHH
Confidence 11111124899999 8999999987 348999999999999998544 67874
No 50
>KOG2564|consensus
Probab=99.36 E-value=5.5e-12 Score=114.97 Aligned_cols=111 Identities=21% Similarity=0.202 Sum_probs=87.5
Q ss_pred eeEEEEeCCc--cEEEEEecC--CCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCccccc
Q psy5044 27 EEVYVETDRG--SILVAVAGN--RGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDV 102 (219)
Q Consensus 27 ~e~~i~t~~g--~~~v~~~G~--~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~ 102 (219)
++.+|..+.+ ...+|..++ ..+|.+++.|+.|.+--| |. ....+|..+.+.
T Consensus 49 ekedv~i~~~~~t~n~Y~t~~~~t~gpil~l~HG~G~S~LS-fA-----~~a~el~s~~~~------------------- 103 (343)
T KOG2564|consen 49 EKEDVSIDGSDLTFNVYLTLPSATEGPILLLLHGGGSSALS-FA-----IFASELKSKIRC------------------- 103 (343)
T ss_pred cccccccCCCcceEEEEEecCCCCCccEEEEeecCcccchh-HH-----HHHHHHHhhcce-------------------
Confidence 5556665544 588888884 578999999999999776 65 346777666554
Q ss_pred ccchhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy5044 103 TQHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLL 182 (219)
Q Consensus 103 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~ 182 (219)
||+++|+||||++...-.. ..|.+.++.|+.
T Consensus 104 ----------------------------------------------r~~a~DlRgHGeTk~~~e~---dlS~eT~~KD~~ 134 (343)
T KOG2564|consen 104 ----------------------------------------------RCLALDLRGHGETKVENED---DLSLETMSKDFG 134 (343)
T ss_pred ----------------------------------------------eEEEeeccccCccccCChh---hcCHHHHHHHHH
Confidence 6799999999987654332 359999999999
Q ss_pred HHHhhh---CCCcEEEEEEcHHHHHHHHHHHh
Q psy5044 183 FVLSYF---GLHSVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 183 ~lLd~L---gI~~~~lvG~SmGG~IAl~fA~~ 211 (219)
++++++ ...++++|||||||.||.+.|..
T Consensus 135 ~~i~~~fge~~~~iilVGHSmGGaIav~~a~~ 166 (343)
T KOG2564|consen 135 AVIKELFGELPPQIILVGHSMGGAIAVHTAAS 166 (343)
T ss_pred HHHHHHhccCCCceEEEeccccchhhhhhhhh
Confidence 999987 46789999999999999888764
No 51
>PRK10985 putative hydrolase; Provisional
Probab=99.34 E-value=2.6e-11 Score=108.30 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=50.5
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCc
Q psy5044 148 FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWY 215 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~R 215 (219)
|+|+++|.||||++....+..|..-..+|+.+.+..+.++++.++++++||||||++++.++.+++++
T Consensus 88 ~~v~~~d~rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~~vG~S~GG~i~~~~~~~~~~~ 155 (324)
T PRK10985 88 WLGVVMHFRGCSGEPNRLHRIYHSGETEDARFFLRWLQREFGHVPTAAVGYSLGGNMLACLLAKEGDD 155 (324)
T ss_pred CEEEEEeCCCCCCCccCCcceECCCchHHHHHHHHHHHHhCCCCCEEEEEecchHHHHHHHHHhhCCC
Confidence 44499999999865432232222224677777777777778889999999999999999999888654
No 52
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.32 E-value=1.2e-11 Score=117.92 Aligned_cols=67 Identities=9% Similarity=0.021 Sum_probs=52.0
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh------CCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 148 FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYF------GLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~L------gI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
++||++|.||||.+. .+.... ....+|+++.++++.| +++++|++||||||.||..+|.++|+||+.
T Consensus 74 ~nVI~VDw~g~g~s~--y~~a~~--~t~~vg~~la~lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~r 146 (442)
T TIGR03230 74 ANVIVVDWLSRAQQH--YPTSAA--YTKLVGKDVAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNR 146 (442)
T ss_pred CEEEEEECCCcCCCC--Cccccc--cHHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeE
Confidence 344999999997543 222111 3477788888888865 479999999999999999999999999864
No 53
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.26 E-value=6.9e-11 Score=106.39 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=56.9
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCC----CcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 148 FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGL----HSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI----~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
|.|+++|+||||.|.. ...+ ...+++++.+++.++++.... .+++++||||||.|++.|+.+++.++++
T Consensus 62 ~~V~~~D~RGhG~S~r-~~rg-~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~ 134 (298)
T COG2267 62 FDVYALDLRGHGRSPR-GQRG-HVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDG 134 (298)
T ss_pred CEEEEecCCCCCCCCC-CCcC-CchhHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccE
Confidence 3349999999997752 1223 234799999999999999874 6899999999999999999999998875
No 54
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.25 E-value=1.4e-10 Score=101.56 Aligned_cols=64 Identities=11% Similarity=0.185 Sum_probs=50.9
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh-----CCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 148 FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYF-----GLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~L-----gI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
++|+++|+||||+|... ..++++..+|+.++++.+ ++++++++||||||++++.+|.+ +.+|++
T Consensus 58 ~~v~~~Dl~G~G~S~~~------~~~~~~~~~d~~~~~~~l~~~~~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~ 126 (274)
T TIGR03100 58 FPVLRFDYRGMGDSEGE------NLGFEGIDADIAAAIDAFREAAPHLRRIVAWGLCDAASAALLYAPA-DLRVAG 126 (274)
T ss_pred CEEEEeCCCCCCCCCCC------CCCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHhhh-CCCccE
Confidence 44499999999875421 126788888888888887 77889999999999999999875 467764
No 55
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.25 E-value=9e-11 Score=109.47 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=51.9
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCC----cEEEEEEcHHHHHHHHHHHhCcC---cccC
Q psy5044 148 FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLH----SVIGLGVGAGGNILARFALSHLW---YCSL 218 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~----~~~lvG~SmGG~IAl~fA~~~P~---RV~~ 218 (219)
|+|+++|+||||+|... .++. ++++.+++|+.++++.+..+ +++++||||||.+++.+| .+|+ ++++
T Consensus 164 y~V~~~D~rGhG~S~~~--~~~~-~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvGhSmGG~ial~~a-~~p~~~~~v~g 237 (395)
T PLN02652 164 FGVYAMDWIGHGGSDGL--HGYV-PSLDYVVEDTEAFLEKIRSENPGVPCFLFGHSTGGAVVLKAA-SYPSIEDKLEG 237 (395)
T ss_pred CEEEEeCCCCCCCCCCC--CCCC-cCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHHHHHHHHHH-hccCcccccce
Confidence 34499999999876532 2322 48999999999999998643 699999999999999876 4664 5553
No 56
>PRK10566 esterase; Provisional
Probab=99.18 E-value=1.7e-10 Score=97.13 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=43.5
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCC--------CCHHHHHHHHHHHHhh--hCCCcEEEEEEcHHHHHHHHHHHhCcCc
Q psy5044 148 FSVYHVNAPGQEEGAQPLADDYIY--------PTMDELSNQLLFVLSY--FGLHSVIGLGVGAGGNILARFALSHLWY 215 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~~~~~~--------~Smd~lA~dL~~lLd~--LgI~~~~lvG~SmGG~IAl~fA~~~P~R 215 (219)
|+|+++|.||||.+....+.. .. .+++++++.+..+.+. .+-++++++|+||||.+++.++.++|+.
T Consensus 55 ~~v~~~d~~g~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~ 131 (249)
T PRK10566 55 FRVIMPDAPMHGARFSGDEAR-RLNHFWQILLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWV 131 (249)
T ss_pred CEEEEecCCcccccCCCcccc-chhhHHHHHHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCe
Confidence 344999999998642211110 10 1244554444444443 2347899999999999999999999864
No 57
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.17 E-value=7.1e-11 Score=104.84 Aligned_cols=66 Identities=12% Similarity=0.044 Sum_probs=47.3
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh------CCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 149 SVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYF------GLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~L------gI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+||++|.+|++ .+..+.. ..+++..++++.++++.+ +.++++++||||||.||..+|.++|+||+.
T Consensus 68 nVi~vD~~~~~--~~~y~~a--~~~~~~v~~~la~~l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~ 139 (275)
T cd00707 68 NVIVVDWGRGA--NPNYPQA--VNNTRVVGAELAKFLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGR 139 (275)
T ss_pred EEEEEECcccc--ccChHHH--HHhHHHHHHHHHHHHHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccce
Confidence 34999999983 2222211 124555556666655554 568999999999999999999999998874
No 58
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.16 E-value=1.6e-10 Score=104.34 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=54.5
Q ss_pred hh-hcCceEEEEcCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhhhC------------------------CCcEEEE
Q psy5044 143 SL-LENFSVYHVNAPGQEEGAQPLA-DDYIYPTMDELSNQLLFVLSYFG------------------------LHSVIGL 196 (219)
Q Consensus 143 ~L-~~~~rvIavDlpGHG~s~s~~~-~~~~~~Smd~lA~dL~~lLd~Lg------------------------I~~~~lv 196 (219)
.| ...|+|+++|+||||+|..... .++ ..+++++++|+.++++... -.+++++
T Consensus 69 ~l~~~G~~V~~~D~rGHG~S~~~~~~~g~-~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 147 (332)
T TIGR01607 69 NFNKNGYSVYGLDLQGHGESDGLQNLRGH-INCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYII 147 (332)
T ss_pred HHHHCCCcEEEecccccCCCccccccccc-hhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEe
Confidence 45 4479999999999997653211 121 1389999999999998752 1368999
Q ss_pred EEcHHHHHHHHHHHhCcC
Q psy5044 197 GVGAGGNILARFALSHLW 214 (219)
Q Consensus 197 G~SmGG~IAl~fA~~~P~ 214 (219)
||||||.|++.|+.++++
T Consensus 148 GhSmGg~i~~~~~~~~~~ 165 (332)
T TIGR01607 148 GLSMGGNIALRLLELLGK 165 (332)
T ss_pred eccCccHHHHHHHHHhcc
Confidence 999999999999987754
No 59
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.16 E-value=5.4e-10 Score=97.91 Aligned_cols=44 Identities=14% Similarity=-0.025 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhh---hCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 175 DELSNQLLFVLSY---FGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 175 d~lA~dL~~lLd~---LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+.++++|..++++ ++.+++.++|+||||++|+.+|+++|+++++
T Consensus 119 ~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~ 165 (275)
T TIGR02821 119 SYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKS 165 (275)
T ss_pred HHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceE
Confidence 4457889999987 4567899999999999999999999999864
No 60
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.11 E-value=3.3e-10 Score=102.09 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=50.8
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHH-----HHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 147 NFSVYHVNAPGQEEGAQPLADDYIYPTMDELSN-----QLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 147 ~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~-----dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
.|+|+++|.+|+|.+.. ..+++++++ .+..+++..+.++++++||||||++++.++.++|++|++
T Consensus 94 G~~V~~~D~~g~g~s~~-------~~~~~d~~~~~~~~~v~~l~~~~~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~ 163 (350)
T TIGR01836 94 GQDVYLIDWGYPDRADR-------YLTLDDYINGYIDKCVDYICRTSKLDQISLLGICQGGTFSLCYAALYPDKIKN 163 (350)
T ss_pred CCeEEEEeCCCCCHHHh-------cCCHHHHHHHHHHHHHHHHHHHhCCCcccEEEECHHHHHHHHHHHhCchheee
Confidence 35559999999975432 126666653 355666677899999999999999999999999998864
No 61
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=98.99 E-value=3.4e-09 Score=107.28 Aligned_cols=68 Identities=16% Similarity=0.048 Sum_probs=50.6
Q ss_pred eEEEEcCCCCCCCCCC---------CCCCCCC----------CCHHHHHHHHHHHHhhhC----------------CCcE
Q psy5044 149 SVYHVNAPGQEEGAQP---------LADDYIY----------PTMDELSNQLLFVLSYFG----------------LHSV 193 (219)
Q Consensus 149 rvIavDlpGHG~s~s~---------~~~~~~~----------~Smd~lA~dL~~lLd~Lg----------------I~~~ 193 (219)
+||++|+||||++... ......| -++.+.+.|+..+..+++ ..++
T Consensus 478 ~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V 557 (792)
T TIGR03502 478 ATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKV 557 (792)
T ss_pred EEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcE
Confidence 3399999999877332 1111112 178999999999999987 3589
Q ss_pred EEEEEcHHHHHHHHHHHhCcCcc
Q psy5044 194 IGLGVGAGGNILARFALSHLWYC 216 (219)
Q Consensus 194 ~lvG~SmGG~IAl~fA~~~P~RV 216 (219)
+++||||||.|+..|+.....++
T Consensus 558 ~~lGHSLGgiig~~~~~~an~~~ 580 (792)
T TIGR03502 558 SFLGHSLGGIVGTSFIAYANTPL 580 (792)
T ss_pred EEEecCHHHHHHHHHHHhcCccc
Confidence 99999999999999998654333
No 62
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=98.97 E-value=2.3e-09 Score=103.12 Aligned_cols=68 Identities=10% Similarity=-0.007 Sum_probs=52.7
Q ss_pred cCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCC-----CcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 146 ENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGL-----HSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 146 ~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI-----~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
..|.|+++|.||||+|..... ..+ .+.++|+.++++.+.. +++.++|+||||++++.+|.++|+++++
T Consensus 52 ~Gy~vv~~D~RG~g~S~g~~~----~~~-~~~~~D~~~~i~~l~~q~~~~~~v~~~G~S~GG~~a~~~a~~~~~~l~a 124 (550)
T TIGR00976 52 QGYAVVIQDTRGRGASEGEFD----LLG-SDEAADGYDLVDWIAKQPWCDGNVGMLGVSYLAVTQLLAAVLQPPALRA 124 (550)
T ss_pred CCcEEEEEeccccccCCCceE----ecC-cccchHHHHHHHHHHhCCCCCCcEEEEEeChHHHHHHHHhccCCCceeE
Confidence 345559999999987653221 113 5677888888887743 5899999999999999999999999875
No 63
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=98.96 E-value=7.8e-09 Score=86.89 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=47.5
Q ss_pred ceEEEEcCCCCCCCCCCCC---CCC---CCCCHHHHHHHHHHHHhhhCC--CcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 148 FSVYHVNAPGQEEGAQPLA---DDY---IYPTMDELSNQLLFVLSYFGL--HSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~---~~~---~~~Smd~lA~dL~~lLd~LgI--~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+.|+++|.||++.+..... ... ..-...++.+.+..+.+..++ +++.++|+||||++++.+|.++|+++++
T Consensus 44 ~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~ 122 (212)
T TIGR01840 44 FVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAG 122 (212)
T ss_pred eEEEecCCcCccccCCCCCCCCccccCCCCccHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheE
Confidence 4559999999874332110 000 001234455555555556666 4899999999999999999999998865
No 64
>PLN02442 S-formylglutathione hydrolase
Probab=98.94 E-value=1.7e-08 Score=89.34 Aligned_cols=45 Identities=16% Similarity=0.040 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 174 MDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 174 md~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
++++.+++.+.++.++.++++++|+||||+.|+.+|.+||+++++
T Consensus 126 ~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~ 170 (283)
T PLN02442 126 VKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDKYKS 170 (283)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchhEEE
Confidence 577777788877778999999999999999999999999999863
No 65
>PLN00021 chlorophyllase
Probab=98.93 E-value=8.8e-09 Score=93.67 Aligned_cols=63 Identities=17% Similarity=0.017 Sum_probs=42.4
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh-------hCCCcEEEEEEcHHHHHHHHHHHhCcCc
Q psy5044 149 SVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSY-------FGLHSVIGLGVGAGGNILARFALSHLWY 215 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~-------LgI~~~~lvG~SmGG~IAl~fA~~~P~R 215 (219)
.|+++|++|++... .... ..+..+..+|+.+.+++ .+.+++.++||||||++|+.+|.++|++
T Consensus 81 ~VvapD~~g~~~~~--~~~~--i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~ 150 (313)
T PLN00021 81 IVVAPQLYTLAGPD--GTDE--IKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAV 150 (313)
T ss_pred EEEEecCCCcCCCC--chhh--HHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhcccc
Confidence 34999999974321 1111 11334445555554433 4567899999999999999999999864
No 66
>KOG1455|consensus
Probab=98.92 E-value=1.3e-08 Score=93.24 Aligned_cols=68 Identities=19% Similarity=0.330 Sum_probs=53.6
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCC------CcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 148 FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGL------HSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI------~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
|.|+++|.+|||+|. .. .+| .++++.+++|+...++.... .++.+.|+||||.|++.++.++|+-.++
T Consensus 83 ~~v~a~D~~GhG~Sd-Gl-~~y-i~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G 156 (313)
T KOG1455|consen 83 FAVYAIDYEGHGRSD-GL-HAY-VPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDG 156 (313)
T ss_pred CeEEEeeccCCCcCC-CC-ccc-CCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCccccc
Confidence 344999999999765 22 233 36999999999999996432 3478899999999999999999976543
No 67
>PRK13604 luxD acyl transferase; Provisional
Probab=98.87 E-value=2.9e-08 Score=91.03 Aligned_cols=113 Identities=16% Similarity=0.093 Sum_probs=75.4
Q ss_pred CCCceeEEEEeCCc-cEEEEEecC-----CCCCEEEEeCCCCCChhhhhhcccChhhHHHhhc-cceEEEecCCCCCCCC
Q psy5044 23 DPTVEEVYVETDRG-SILVAVAGN-----RGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLE-NFSVYHVNAPGQEEGA 95 (219)
Q Consensus 23 ~~~~~e~~i~t~~g-~~~v~~~G~-----~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~-~~~v~hv~~pG~~~~a 95 (219)
.+-..+|.|.+..| .|+..+.-+ ..++++|+.|++|-+.. .+. .-++.|.+ .|.|
T Consensus 6 ~~~~~~~~~~~~dG~~L~Gwl~~P~~~~~~~~~~vIi~HGf~~~~~-~~~-----~~A~~La~~G~~v------------ 67 (307)
T PRK13604 6 SFKTIDHVICLENGQSIRVWETLPKENSPKKNNTILIASGFARRMD-HFA-----GLAEYLSSNGFHV------------ 67 (307)
T ss_pred cccchhheEEcCCCCEEEEEEEcCcccCCCCCCEEEEeCCCCCChH-HHH-----HHHHHHHHCCCEE------------
Confidence 34567889999887 666555443 24579999999998743 233 33445544 3666
Q ss_pred CCcccccccchhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCC-CCCCCCCCCCCCCCCH
Q psy5044 96 QPLADDVTQHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQ-EEGAQPLADDYIYPTM 174 (219)
Q Consensus 96 ~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGH-G~s~s~~~~~~~~~Sm 174 (219)
+++|.||| |+|.-... ..|+
T Consensus 68 -------------------------------------------------------LrfD~rg~~GeS~G~~~----~~t~ 88 (307)
T PRK13604 68 -------------------------------------------------------IRYDSLHHVGLSSGTID----EFTM 88 (307)
T ss_pred -------------------------------------------------------EEecCCCCCCCCCCccc----cCcc
Confidence 99999998 76643221 1243
Q ss_pred HHHHHHHHHHHhh---hCCCcEEEEEEcHHHHHHHHHHHhC
Q psy5044 175 DELSNQLLFVLSY---FGLHSVIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 175 d~lA~dL~~lLd~---LgI~~~~lvG~SmGG~IAl~fA~~~ 212 (219)
....+|+.++++. .+.++..++||||||.+|+..|.+.
T Consensus 89 s~g~~Dl~aaid~lk~~~~~~I~LiG~SmGgava~~~A~~~ 129 (307)
T PRK13604 89 SIGKNSLLTVVDWLNTRGINNLGLIAASLSARIAYEVINEI 129 (307)
T ss_pred cccHHHHHHHHHHHHhcCCCceEEEEECHHHHHHHHHhcCC
Confidence 4445666444444 4678999999999999997777643
No 68
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.86 E-value=1.3e-08 Score=95.24 Aligned_cols=73 Identities=19% Similarity=0.230 Sum_probs=60.1
Q ss_pred cCceEEEEcCCCCCCCCCCC---C-C------CCCCCCHHHHHHHHHHHHhhhCCCcEE-EEEEcHHHHHHHHHHHhCcC
Q psy5044 146 ENFSVYHVNAPGQEEGAQPL---A-D------DYIYPTMDELSNQLLFVLSYFGLHSVI-GLGVGAGGNILARFALSHLW 214 (219)
Q Consensus 146 ~~~rvIavDlpGHG~s~s~~---~-~------~~~~~Smd~lA~dL~~lLd~LgI~~~~-lvG~SmGG~IAl~fA~~~P~ 214 (219)
++|.||+.|..|.+.|++.. . . .++..|+.|.+..-..++++|||++.. ++|-|||||.|++.|.+|||
T Consensus 91 ~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~ti~D~V~aq~~ll~~LGI~~l~avvGgSmGGMqaleWa~~yPd 170 (368)
T COG2021 91 ERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVITIRDMVRAQRLLLDALGIKKLAAVVGGSMGGMQALEWAIRYPD 170 (368)
T ss_pred cceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCcccHHHHHHHHHHHHHhcCcceEeeeeccChHHHHHHHHHHhChH
Confidence 47788999999998554421 1 1 223359999999999999999999976 99999999999999999999
Q ss_pred cccC
Q psy5044 215 YCSL 218 (219)
Q Consensus 215 RV~~ 218 (219)
||+.
T Consensus 171 ~V~~ 174 (368)
T COG2021 171 RVRR 174 (368)
T ss_pred HHhh
Confidence 9974
No 69
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=98.83 E-value=1.1e-08 Score=97.56 Aligned_cols=83 Identities=20% Similarity=0.118 Sum_probs=64.4
Q ss_pred hhhhchhhhhh-hhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHh
Q psy5044 133 QAFFNFSDMRS-LLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 133 ~~~~nw~~~~~-L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~ 211 (219)
.....|..+.. |.+..++...|++|+|..-.. +.... -.++++++.|.+++++.+.++++++||||||.+++.|+.+
T Consensus 105 ~~~~~~~~li~~L~~~GY~~~~dL~g~gYDwR~-~~~~~-~~~~~Lk~lIe~~~~~~g~~kV~LVGHSMGGlva~~fl~~ 182 (440)
T PLN02733 105 DEVYYFHDMIEQLIKWGYKEGKTLFGFGYDFRQ-SNRLP-ETMDGLKKKLETVYKASGGKKVNIISHSMGGLLVKCFMSL 182 (440)
T ss_pred chHHHHHHHHHHHHHcCCccCCCcccCCCCccc-cccHH-HHHHHHHHHHHHHHHHcCCCCEEEEEECHhHHHHHHHHHH
Confidence 34577888885 999888889999999864322 11101 1467788888888888899999999999999999999999
Q ss_pred CcCccc
Q psy5044 212 HLWYCS 217 (219)
Q Consensus 212 ~P~RV~ 217 (219)
+|++++
T Consensus 183 ~p~~~~ 188 (440)
T PLN02733 183 HSDVFE 188 (440)
T ss_pred CCHhHH
Confidence 998653
No 70
>KOG2382|consensus
Probab=98.83 E-value=1e-08 Score=94.25 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=54.3
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhC----CCcEEEEEEcHHH-HHHHHHHHhCcCccc
Q psy5044 149 SVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFG----LHSVIGLGVGAGG-NILARFALSHLWYCS 217 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~Lg----I~~~~lvG~SmGG-~IAl~fA~~~P~RV~ 217 (219)
+++++|.|=||.|....+ .+-.++|+++..+|+..+ ..+++++|||||| -+++.++.++|+++.
T Consensus 82 ~v~~vd~RnHG~Sp~~~~-----h~~~~ma~dv~~Fi~~v~~~~~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~ 150 (315)
T KOG2382|consen 82 DVYAVDVRNHGSSPKITV-----HNYEAMAEDVKLFIDGVGGSTRLDPVVLLGHSMGGVKVAMAETLKKPDLIE 150 (315)
T ss_pred ceEEEecccCCCCccccc-----cCHHHHHHHHHHHHHHcccccccCCceecccCcchHHHHHHHHHhcCcccc
Confidence 679999999986654332 256999999999999995 7889999999999 888899999999865
No 71
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.77 E-value=5.2e-08 Score=94.91 Aligned_cols=70 Identities=19% Similarity=0.137 Sum_probs=53.3
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHH---H-HHHHhC-cCcccC
Q psy5044 147 NFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNIL---A-RFALSH-LWYCSL 218 (219)
Q Consensus 147 ~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IA---l-~fA~~~-P~RV~~ 218 (219)
.|+|+++|+||||.+......+ .| ..+.+.+.|.++++++|.++++++||||||.++ + .++.++ |+||++
T Consensus 220 Gf~V~~iDwrgpg~s~~~~~~d-dY-~~~~i~~al~~v~~~~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~s 294 (532)
T TIGR01838 220 GHTVFVISWRNPDASQADKTFD-DY-IRDGVIAALEVVEAITGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKS 294 (532)
T ss_pred CcEEEEEECCCCCcccccCChh-hh-HHHHHHHHHHHHHHhcCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccce
Confidence 4555999999998765433222 22 556677789999999999999999999999985 2 366666 888874
No 72
>PRK07868 acyl-CoA synthetase; Validated
Probab=98.76 E-value=4.4e-08 Score=100.45 Aligned_cols=65 Identities=9% Similarity=-0.012 Sum_probs=45.6
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh---hCCCcEEEEEEcHHHHHHHHHHHhC-cCcccC
Q psy5044 149 SVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSY---FGLHSVIGLGVGAGGNILARFALSH-LWYCSL 218 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~---LgI~~~~lvG~SmGG~IAl~fA~~~-P~RV~~ 218 (219)
+|+++| +|.+.. +..+...++++++..+.+.|+. +..++++++||||||++++.||+.+ |+||++
T Consensus 101 ~v~~~d---~G~~~~--~~~~~~~~l~~~i~~l~~~l~~v~~~~~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~ 169 (994)
T PRK07868 101 DPWVID---FGSPDK--VEGGMERNLADHVVALSEAIDTVKDVTGRDVHLVGYSQGGMFCYQAAAYRRSKDIAS 169 (994)
T ss_pred EEEEEc---CCCCCh--hHcCccCCHHHHHHHHHHHHHHHHHhhCCceEEEEEChhHHHHHHHHHhcCCCccce
Confidence 449999 443332 2221124788887777776665 4568999999999999999999755 568874
No 73
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=98.75 E-value=5.4e-08 Score=74.56 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=40.9
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 149 SVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
.|+.+|.||+|.+. + ...++++.+++. -+..+.+++.++||||||.+++.++.++ .++++
T Consensus 28 ~v~~~~~~~~~~~~-----~--~~~~~~~~~~~~--~~~~~~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~ 87 (145)
T PF12695_consen 28 AVVAFDYPGHGDSD-----G--ADAVERVLADIR--AGYPDPDRIILIGHSMGGAIAANLAARN-PRVKA 87 (145)
T ss_dssp EEEEESCTTSTTSH-----H--SHHHHHHHHHHH--HHHCTCCEEEEEEETHHHHHHHHHHHHS-TTESE
T ss_pred EEEEEecCCCCccc-----h--hHHHHHHHHHHH--hhcCCCCcEEEEEEccCcHHHHHHhhhc-cceeE
Confidence 33999999997531 1 112233333322 1123789999999999999999999988 66654
No 74
>PRK10162 acetyl esterase; Provisional
Probab=98.74 E-value=1.5e-07 Score=84.73 Aligned_cols=111 Identities=15% Similarity=0.128 Sum_probs=73.3
Q ss_pred CceeEEEEeCCccEEEEEec--CCCCCEEEEeCCCCCChhh--hhhcccChhhHHHhhccceEEEecCCCCCCCCCCccc
Q psy5044 25 TVEEVYVETDRGSILVAVAG--NRGKPAILTYHDLGLNYIS--NFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLAD 100 (219)
Q Consensus 25 ~~~e~~i~t~~g~~~v~~~G--~~~~p~il~~Hd~G~n~~~--~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~ 100 (219)
..++..|.+..|.+.+.+.- ..++|+||.+||-|.-..+ .|. +.++.|...
T Consensus 56 ~~~~~~i~~~~g~i~~~~y~P~~~~~p~vv~~HGGg~~~g~~~~~~-----~~~~~la~~-------------------- 110 (318)
T PRK10162 56 ATRAYMVPTPYGQVETRLYYPQPDSQATLFYLHGGGFILGNLDTHD-----RIMRLLASY-------------------- 110 (318)
T ss_pred eEEEEEEecCCCceEEEEECCCCCCCCEEEEEeCCcccCCCchhhh-----HHHHHHHHH--------------------
Confidence 46778888888877777764 3457999999997732211 122 234444332
Q ss_pred ccccchhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHH---H
Q psy5044 101 DVTQHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDE---L 177 (219)
Q Consensus 101 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~---l 177 (219)
..+.|+.+|.|.-.+. +.|. .++| .
T Consensus 111 ---------------------------------------------~g~~Vv~vdYrlape~--~~p~-----~~~D~~~a 138 (318)
T PRK10162 111 ---------------------------------------------SGCTVIGIDYTLSPEA--RFPQ-----AIEEIVAV 138 (318)
T ss_pred ---------------------------------------------cCCEEEEecCCCCCCC--CCCC-----cHHHHHHH
Confidence 1234599999976422 2222 3444 4
Q ss_pred HHHHHHHHhhhCC--CcEEEEEEcHHHHHHHHHHHhC
Q psy5044 178 SNQLLFVLSYFGL--HSVIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 178 A~dL~~lLd~LgI--~~~~lvG~SmGG~IAl~fA~~~ 212 (219)
.+++.+..+.+++ ++++++|+|+||++|+.+|.+.
T Consensus 139 ~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~ 175 (318)
T PRK10162 139 CCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWL 175 (318)
T ss_pred HHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHH
Confidence 4556666667887 5899999999999999999864
No 75
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.72 E-value=6.2e-08 Score=99.47 Aligned_cols=64 Identities=20% Similarity=0.267 Sum_probs=51.4
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCC-cEEEEEEcHHHHHHHHHHHh---CcCccc
Q psy5044 148 FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLH-SVIGLGVGAGGNILARFALS---HLWYCS 217 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~-~~~lvG~SmGG~IAl~fA~~---~P~RV~ 217 (219)
++|+.+|+|||+.. .+. . .+++++|+++.+.++++..+ +++++||||||+||.++|.+ +|+++.
T Consensus 1095 ~~v~~~~~~g~~~~---~~~--~-~~l~~la~~~~~~i~~~~~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~ 1162 (1296)
T PRK10252 1095 WSIYGIQSPRPDGP---MQT--A-TSLDEVCEAHLATLLEQQPHGPYHLLGYSLGGTLAQGIAARLRARGEEVA 1162 (1296)
T ss_pred CcEEEEECCCCCCC---CCC--C-CCHHHHHHHHHHHHHhhCCCCCEEEEEechhhHHHHHHHHHHHHcCCcee
Confidence 34499999999743 121 2 39999999999999987754 89999999999999999996 466654
No 76
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=98.64 E-value=2.9e-07 Score=76.59 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=47.2
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCC-cEEEEEEcHHHHHHHHHHHh
Q psy5044 149 SVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLH-SVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~-~~~lvG~SmGG~IAl~fA~~ 211 (219)
.|+.++.||++... + ...|++++|+...+.|.+..-+ +++++|||+||.||...|.+
T Consensus 29 ~v~~i~~~~~~~~~---~---~~~si~~la~~y~~~I~~~~~~gp~~L~G~S~Gg~lA~E~A~~ 86 (229)
T PF00975_consen 29 GVYGIEYPGRGDDE---P---PPDSIEELASRYAEAIRARQPEGPYVLAGWSFGGILAFEMARQ 86 (229)
T ss_dssp EEEEECSTTSCTTS---H---EESSHHHHHHHHHHHHHHHTSSSSEEEEEETHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCCC---C---CCCCHHHHHHHHHHHhhhhCCCCCeeehccCccHHHHHHHHHH
Confidence 34999999996222 1 1239999999999999888776 99999999999999999974
No 77
>PRK11460 putative hydrolase; Provisional
Probab=98.56 E-value=7.3e-07 Score=76.89 Aligned_cols=44 Identities=7% Similarity=0.038 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhhCC--CcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 175 DELSNQLLFVLSYFGL--HSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI--~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+.+.+.+..+.+.+++ ++++++|+|+||++++.+|.++|+++++
T Consensus 85 ~~l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~ 130 (232)
T PRK11460 85 PTFIETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGR 130 (232)
T ss_pred HHHHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceE
Confidence 3344455555566676 5799999999999999999999987653
No 78
>KOG2984|consensus
Probab=98.54 E-value=8.9e-08 Score=84.79 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=87.1
Q ss_pred CCceeEEEEeCCccEEEEEecCCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCcccccc
Q psy5044 24 PTVEEVYVETDRGSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDVT 103 (219)
Q Consensus 24 ~~~~e~~i~t~~g~~~v~~~G~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~~ 103 (219)
.+..|..+....-.+++.-.|.|.+-.+++---+|...+. |. |++.++-....
T Consensus 19 ~~~te~kv~vng~ql~y~~~G~G~~~iLlipGalGs~~tD-f~-----pql~~l~k~l~--------------------- 71 (277)
T KOG2984|consen 19 SDYTESKVHVNGTQLGYCKYGHGPNYILLIPGALGSYKTD-FP-----PQLLSLFKPLQ--------------------- 71 (277)
T ss_pred chhhhheeeecCceeeeeecCCCCceeEeccccccccccc-CC-----HHHHhcCCCCc---------------------
Confidence 3455555655555788888887766666666667766544 76 66666533211
Q ss_pred cchhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy5044 104 QHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLF 183 (219)
Q Consensus 104 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~ 183 (219)
+.+|++|.||.|.|.++.. .+..--..+=|++...
T Consensus 72 --------------------------------------------~TivawDPpGYG~SrPP~R-kf~~~ff~~Da~~avd 106 (277)
T KOG2984|consen 72 --------------------------------------------VTIVAWDPPGYGTSRPPER-KFEVQFFMKDAEYAVD 106 (277)
T ss_pred --------------------------------------------eEEEEECCCCCCCCCCCcc-cchHHHHHHhHHHHHH
Confidence 2449999999987654321 1111123445778889
Q ss_pred HHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 184 VLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 184 lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+|++|.++++.++|+|-||..|+..|+++++.|..
T Consensus 107 LM~aLk~~~fsvlGWSdGgiTalivAak~~e~v~r 141 (277)
T KOG2984|consen 107 LMEALKLEPFSVLGWSDGGITALIVAAKGKEKVNR 141 (277)
T ss_pred HHHHhCCCCeeEeeecCCCeEEEEeeccChhhhhh
Confidence 99999999999999999999999999999998864
No 79
>COG1647 Esterase/lipase [General function prediction only]
Probab=98.43 E-value=8.9e-07 Score=78.70 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=43.6
Q ss_pred EEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh---hhCCCcEEEEEEcHHHHHHHHHHHhCc
Q psy5044 151 YHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLS---YFGLHSVIGLGVGAGGNILARFALSHL 213 (219)
Q Consensus 151 IavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd---~LgI~~~~lvG~SmGG~IAl~fA~~~P 213 (219)
.+|-+||||-....+- -.+.++.=+++.+..+ ..|-+++.++|.||||.+++.+|.++|
T Consensus 46 ~aP~ypGHG~~~e~fl----~t~~~DW~~~v~d~Y~~L~~~gy~eI~v~GlSmGGv~alkla~~~p 107 (243)
T COG1647 46 YAPRYPGHGTLPEDFL----KTTPRDWWEDVEDGYRDLKEAGYDEIAVVGLSMGGVFALKLAYHYP 107 (243)
T ss_pred ecCCCCCCCCCHHHHh----cCCHHHHHHHHHHHHHHHHHcCCCeEEEEeecchhHHHHHHHhhCC
Confidence 9999999974432221 1255665555554444 447899999999999999999999997
No 80
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=98.23 E-value=2e-06 Score=71.66 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=53.9
Q ss_pred hchhhhhhh-hcCceEEEEcCCCCCCCCCC----CCCCCCCCCHHHHHHHHHHHHhhhCC--CcEEEEEEcHHHHHHHHH
Q psy5044 136 FNFSDMRSL-LENFSVYHVNAPGQEEGAQP----LADDYIYPTMDELSNQLLFVLSYFGL--HSVIGLGVGAGGNILARF 208 (219)
Q Consensus 136 ~nw~~~~~L-~~~~rvIavDlpGHG~s~s~----~~~~~~~~Smd~lA~dL~~lLd~LgI--~~~~lvG~SmGG~IAl~f 208 (219)
|||. ++-| +..|.|+.+|.||.++.... .......-.++|+.+.+..+.+.-.+ +++.++|+|+||++++..
T Consensus 3 f~~~-~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~ 81 (213)
T PF00326_consen 3 FNWN-AQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLA 81 (213)
T ss_dssp -SHH-HHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHH
T ss_pred eeHH-HHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchh
Confidence 4533 3345 78999999999999732111 01010112456666666666666444 789999999999999999
Q ss_pred HHhCcCcccC
Q psy5044 209 ALSHLWYCSL 218 (219)
Q Consensus 209 A~~~P~RV~~ 218 (219)
+.++|+++++
T Consensus 82 ~~~~~~~f~a 91 (213)
T PF00326_consen 82 ATQHPDRFKA 91 (213)
T ss_dssp HHHTCCGSSE
T ss_pred hcccceeeee
Confidence 9999999875
No 81
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.23 E-value=2.2e-06 Score=76.61 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=55.3
Q ss_pred chhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh-hCCCcEEEEEEcHHHHHHHHHHHhC
Q psy5044 137 NFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSY-FGLHSVIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 137 nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~-LgI~~~~lvG~SmGG~IAl~fA~~~ 212 (219)
.|.. .|...+.++++.+||+|..- ..+. ..+|+.||+.|..-|.. +-=++..+.||||||++|.++|.+.
T Consensus 25 ~W~~--~lp~~iel~avqlPGR~~r~-~ep~---~~di~~Lad~la~el~~~~~d~P~alfGHSmGa~lAfEvArrl 95 (244)
T COG3208 25 SWSR--RLPADIELLAVQLPGRGDRF-GEPL---LTDIESLADELANELLPPLLDAPFALFGHSMGAMLAFEVARRL 95 (244)
T ss_pred HHHh--hCCchhheeeecCCCccccc-CCcc---cccHHHHHHHHHHHhccccCCCCeeecccchhHHHHHHHHHHH
Confidence 4444 67889999999999997542 2221 23899999999999984 4335799999999999999999875
No 82
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.21 E-value=1.4e-05 Score=73.07 Aligned_cols=62 Identities=26% Similarity=0.280 Sum_probs=52.9
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCC-CcEEEEEEcHHHHHHHHHHHhCc
Q psy5044 149 SVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGL-HSVIGLGVGAGGNILARFALSHL 213 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI-~~~~lvG~SmGG~IAl~fA~~~P 213 (219)
|+|.+.+||+|.... +.+..| |-.+-+..+.++|+.|+| ++.+++|||.|+-.|+++|..+|
T Consensus 64 R~I~iN~PGf~~t~~--~~~~~~-~n~er~~~~~~ll~~l~i~~~~i~~gHSrGcenal~la~~~~ 126 (297)
T PF06342_consen 64 RFIGINYPGFGFTPG--YPDQQY-TNEERQNFVNALLDELGIKGKLIFLGHSRGCENALQLAVTHP 126 (297)
T ss_pred EEEEeCCCCCCCCCC--Cccccc-ChHHHHHHHHHHHHHcCCCCceEEEEeccchHHHHHHHhcCc
Confidence 679999999975543 333344 889999999999999999 57899999999999999999986
No 83
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.21 E-value=6.3e-06 Score=73.18 Aligned_cols=95 Identities=8% Similarity=0.133 Sum_probs=70.8
Q ss_pred ccccCCCCCccchhhhhchhhhhh-hhcCceEEEEcCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHhhhCC-----
Q psy5044 120 ICYDTDHTNISNFQAFFNFSDMRS-LLENFSVYHVNAPGQEEGAQPL---ADDYIYPTMDELSNQLLFVLSYFGL----- 190 (219)
Q Consensus 120 ~~~~~~~~~~~~f~~~~nw~~~~~-L~~~~rvIavDlpGHG~s~s~~---~~~~~~~Smd~lA~dL~~lLd~LgI----- 190 (219)
.+|-+||+...-..+|.+ .+.. |..++.|+++.+.||....... ..+ +.+|+++..+.-.++++++--
T Consensus 6 ~~IPGNPGlv~fY~~Fl~--~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~~~~-~~~sL~~QI~hk~~~i~~~~~~~~~~ 82 (266)
T PF10230_consen 6 VFIPGNPGLVEFYEEFLS--ALYEKLNPQFEILGISHAGHSTSPSNSKFSPNG-RLFSLQDQIEHKIDFIKELIPQKNKP 82 (266)
T ss_pred EEECCCCChHHHHHHHHH--HHHHhCCCCCeeEEecCCCCcCCcccccccCCC-CccCHHHHHHHHHHHHHHHhhhhcCC
Confidence 456778887766655542 2333 4689999999999996544331 122 456999999998888888754
Q ss_pred -CcEEEEEEcHHHHHHHHHHHhCc---Cccc
Q psy5044 191 -HSVIGLGVGAGGNILARFALSHL---WYCS 217 (219)
Q Consensus 191 -~~~~lvG~SmGG~IAl~fA~~~P---~RV~ 217 (219)
.+++++|||+|+||+++...++| .+|+
T Consensus 83 ~~~liLiGHSIGayi~levl~r~~~~~~~V~ 113 (266)
T PF10230_consen 83 NVKLILIGHSIGAYIALEVLKRLPDLKFRVK 113 (266)
T ss_pred CCcEEEEeCcHHHHHHHHHHHhccccCCcee
Confidence 46999999999999999999999 5554
No 84
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=98.21 E-value=8.6e-06 Score=77.56 Aligned_cols=68 Identities=21% Similarity=0.160 Sum_probs=44.1
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhC---CCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 147 NFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFG---LHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 147 ~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~Lg---I~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
.+.++.+|.||.|.+.. .+-. ++-+.+-..|.+.|.... -.++.++|.|+|||+|.++|..+++|+++
T Consensus 218 GiA~LtvDmPG~G~s~~-~~l~---~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~Rlka 288 (411)
T PF06500_consen 218 GIAMLTVDMPGQGESPK-WPLT---QDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKA 288 (411)
T ss_dssp T-EEEEE--TTSGGGTT-T-S----S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SE
T ss_pred CCEEEEEccCCCccccc-CCCC---cCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceee
Confidence 34449999999997642 2211 122445555555554442 35899999999999999999999999986
No 85
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=98.17 E-value=1.6e-05 Score=63.28 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=54.0
Q ss_pred hchhhhhh-hhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-hhCCCcEEEEEEcHHHHHHHHHHHhC
Q psy5044 136 FNFSDMRS-LLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLS-YFGLHSVIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 136 ~nw~~~~~-L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd-~LgI~~~~lvG~SmGG~IAl~fA~~~ 212 (219)
..|..+.. |..+++++++|.||++.+.. . ..+++++++.+.+.+. .....+++++||||||.++..+|.+.
T Consensus 13 ~~~~~~~~~l~~~~~v~~~~~~g~~~~~~-~-----~~~~~~~~~~~~~~l~~~~~~~~~~l~g~s~Gg~~a~~~a~~l 85 (212)
T smart00824 13 HEYARLAAALRGRRDVSALPLPGFGPGEP-L-----PASADALVEAQAEAVLRAAGGRPFVLVGHSSGGLLAHAVAARL 85 (212)
T ss_pred HHHHHHHHhcCCCccEEEecCCCCCCCCC-C-----CCCHHHHHHHHHHHHHHhcCCCCeEEEEECHHHHHHHHHHHHH
Confidence 45666664 88889999999999975432 1 1278888887766554 44567899999999999999999864
No 86
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=98.15 E-value=1.5e-05 Score=69.30 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=40.3
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCCCCCHHH----HHHHHHHHHhhh-----CCCcEEEEEEcHHHHHHHHHHHhCc
Q psy5044 147 NFSVYHVNAPGQEEGAQPLADDYIYPTMDE----LSNQLLFVLSYF-----GLHSVIGLGVGAGGNILARFALSHL 213 (219)
Q Consensus 147 ~~rvIavDlpGHG~s~s~~~~~~~~~Smd~----lA~dL~~lLd~L-----gI~~~~lvG~SmGG~IAl~fA~~~P 213 (219)
+++++++|..... + ... + .++.+ +++.+..+++.. +-++++++||||||.+|..++...+
T Consensus 39 ~~d~ft~df~~~~-s--~~~-g---~~l~~q~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~ 107 (225)
T PF07819_consen 39 HFDFFTVDFNEEL-S--AFH-G---RTLQRQAEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPN 107 (225)
T ss_pred ceeEEEeccCccc-c--ccc-c---ccHHHHHHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccc
Confidence 4667999988763 1 111 1 13444 444555666666 6789999999999999988887554
No 87
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=98.14 E-value=1.4e-05 Score=59.21 Aligned_cols=33 Identities=9% Similarity=0.198 Sum_probs=25.9
Q ss_pred EEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy5044 151 YHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLS 186 (219)
Q Consensus 151 IavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd 186 (219)
+++|+||||+|.... ++ ..+++++.+|+.++++
T Consensus 47 ~~~D~rGhG~S~g~r--g~-~~~~~~~v~D~~~~~~ 79 (79)
T PF12146_consen 47 FAYDHRGHGRSEGKR--GH-IDSFDDYVDDLHQFIQ 79 (79)
T ss_pred EEECCCcCCCCCCcc--cc-cCCHHHHHHHHHHHhC
Confidence 999999999876322 32 3589999999999874
No 88
>COG0400 Predicted esterase [General function prediction only]
Probab=98.11 E-value=2.1e-05 Score=68.41 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHhhhCC--CcEEEEEEcHHHHHHHHHHHhCcCcccCC
Q psy5044 173 TMDELSNQLLFVLSYFGL--HSVIGLGVGAGGNILARFALSHLWYCSLT 219 (219)
Q Consensus 173 Smd~lA~dL~~lLd~LgI--~~~~lvG~SmGG~IAl~fA~~~P~RV~~~ 219 (219)
..+.+++-|.++.++.++ ++++++|+|-||+|++...+++|+.++++
T Consensus 79 ~~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~a 127 (207)
T COG0400 79 ETEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGA 127 (207)
T ss_pred HHHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccc
Confidence 668888899999999999 89999999999999999999999987753
No 89
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=98.05 E-value=2.1e-05 Score=68.91 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhhCCC--cEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 175 DELSNQLLFVLSYFGLH--SVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI~--~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+.+++.+.++..+.+|+ ++.+.|+|+||+.+..+|..|||++++
T Consensus 79 ~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa 124 (220)
T PF10503_consen 79 AFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAA 124 (220)
T ss_pred hhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceE
Confidence 34555566677788874 899999999999999999999999875
No 90
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.00 E-value=3.5e-05 Score=67.47 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhhC------CCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 175 DELSNQLLFVLSYFG------LHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 175 d~lA~dL~~lLd~Lg------I~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
.+..+|+.+.++.|. -+++-++|+||||.+++.+|.+.| +|++
T Consensus 90 ~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a 138 (236)
T COG0412 90 AEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKA 138 (236)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccE
Confidence 677788888888874 467999999999999999999888 5554
No 91
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=97.97 E-value=0.00012 Score=68.38 Aligned_cols=118 Identities=20% Similarity=0.226 Sum_probs=71.7
Q ss_pred ceeEEEEeCCc-cEEEEEec---CCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCcccc
Q psy5044 26 VEEVYVETDRG-SILVAVAG---NRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADD 101 (219)
Q Consensus 26 ~~e~~i~t~~g-~~~v~~~G---~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~ 101 (219)
.+..-|+|++| .+...... ...+|-+|.+|||-.+..|-+ ++.|.+..
T Consensus 49 ~~re~v~~pdg~~~~ldw~~~p~~~~~P~vVl~HGL~G~s~s~y--------~r~L~~~~-------------------- 100 (345)
T COG0429 49 YTRERLETPDGGFIDLDWSEDPRAAKKPLVVLFHGLEGSSNSPY--------ARGLMRAL-------------------- 100 (345)
T ss_pred cceEEEEcCCCCEEEEeeccCccccCCceEEEEeccCCCCcCHH--------HHHHHHHH--------------------
Confidence 45568899986 55554444 467899999999988877633 44432221
Q ss_pred cccchhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCC-CCHHHHHHH
Q psy5044 102 VTQHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIY-PTMDELSNQ 180 (219)
Q Consensus 102 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~-~Smd~lA~d 180 (219)
-.+.+.++.++.|||+++....|.-|.. .| +|++.-
T Consensus 101 ------------------------------------------~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t-~D~~~~ 137 (345)
T COG0429 101 ------------------------------------------SRRGWLVVVFHFRGCSGEANTSPRLYHSGET-EDIRFF 137 (345)
T ss_pred ------------------------------------------HhcCCeEEEEecccccCCcccCcceecccch-hHHHHH
Confidence 1123455999999998665433322111 12 444333
Q ss_pred HHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcC
Q psy5044 181 LLFVLSYFGLHSVIGLGVGAGGNILARFALSHLW 214 (219)
Q Consensus 181 L~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~ 214 (219)
+..+.....-.+...+|.|+||.+...|-....+
T Consensus 138 l~~l~~~~~~r~~~avG~SLGgnmLa~ylgeeg~ 171 (345)
T COG0429 138 LDWLKARFPPRPLYAVGFSLGGNMLANYLGEEGD 171 (345)
T ss_pred HHHHHHhCCCCceEEEEecccHHHHHHHHHhhcc
Confidence 3333333455789999999999655555544433
No 92
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=97.92 E-value=3.9e-05 Score=64.75 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhhh---CC--CcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 173 TMDELSNQLLFVLSYF---GL--HSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 173 Smd~lA~dL~~lLd~L---gI--~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
.+++.++.|.++++.. ++ +++++.|.|.||++|+.+++++|+++++
T Consensus 82 ~i~~s~~~l~~li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~g 132 (216)
T PF02230_consen 82 GIEESAERLDELIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPEPLAG 132 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSSTSSE
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCcCcCE
Confidence 4555566666666643 34 6899999999999999999999998865
No 93
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=97.88 E-value=2.4e-05 Score=68.61 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHh
Q psy5044 173 TMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 173 Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~ 211 (219)
+..++++-|.+++.+-|- +|.+|||||||.|+..|...
T Consensus 58 ~~~~l~~fI~~Vl~~TGa-kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 58 SAKQLRAFIDAVLAYTGA-KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp HHHHHHHHHHHHHHHHT---EEEEEETCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhCC-EEEEEEcCCcCHHHHHHHHH
Confidence 346899999999999999 99999999999998888653
No 94
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=97.83 E-value=2.6e-05 Score=69.69 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHhhh----CCCcEEEEEEcHHHHHHHHHHHhCcC
Q psy5044 173 TMDELSNQLLFVLSYF----GLHSVIGLGVGAGGNILARFALSHLW 214 (219)
Q Consensus 173 Smd~lA~dL~~lLd~L----gI~~~~lvG~SmGG~IAl~fA~~~P~ 214 (219)
++...|.||..+|.+| +++++.+|||||||+++..|+..|..
T Consensus 81 ~~~~qa~wl~~vl~~L~~~Y~~~~~N~VGHSmGg~~~~~yl~~~~~ 126 (255)
T PF06028_consen 81 NYKKQAKWLKKVLKYLKKKYHFKKFNLVGHSMGGLSWTYYLENYGN 126 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEeEEEECccHHHHHHHHHHhcc
Confidence 7899999999999887 89999999999999999999998754
No 95
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.82 E-value=0.00016 Score=69.37 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=53.4
Q ss_pred hhhhchhhhhhhhcCceEEEEcCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh-------hCCCcEEEEEEcHHHHH
Q psy5044 133 QAFFNFSDMRSLLENFSVYHVNAP-GQEEGAQPLADDYIYPTMDELSNQLLFVLSY-------FGLHSVIGLGVGAGGNI 204 (219)
Q Consensus 133 ~~~~nw~~~~~L~~~~rvIavDlp-GHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~-------LgI~~~~lvG~SmGG~I 204 (219)
.+-+.|... ..+|.+|.| |+|.|.+... .+ ..+.++.|+++.++|+. ++-.+++++|+||||..
T Consensus 113 ~n~~sW~~~------~~~l~iDqP~G~G~S~~~~~-~~-~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y 184 (462)
T PTZ00472 113 NNTYSWNNE------AYVIYVDQPAGVGFSYADKA-DY-DHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHY 184 (462)
T ss_pred ECCcccccc------cCeEEEeCCCCcCcccCCCC-CC-CCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhh
Confidence 344556543 467999976 8887765432 22 23789999999999984 45688999999999999
Q ss_pred HHHHHHh
Q psy5044 205 LARFALS 211 (219)
Q Consensus 205 Al~fA~~ 211 (219)
+..+|.+
T Consensus 185 ~p~~a~~ 191 (462)
T PTZ00472 185 APATAYR 191 (462)
T ss_pred HHHHHHH
Confidence 9888875
No 96
>KOG2565|consensus
Probab=97.78 E-value=0.00012 Score=69.62 Aligned_cols=69 Identities=14% Similarity=0.069 Sum_probs=62.6
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 147 NFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 147 ~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
.|.||++-+||.|-|+.+...++ +-.+.|..+..+|=+||..++.+=|--||+.|+..+|..||++|.+
T Consensus 188 ~FEVI~PSlPGygwSd~~sk~GF---n~~a~ArvmrkLMlRLg~nkffiqGgDwGSiI~snlasLyPenV~G 256 (469)
T KOG2565|consen 188 AFEVIAPSLPGYGWSDAPSKTGF---NAAATARVMRKLMLRLGYNKFFIQGGDWGSIIGSNLASLYPENVLG 256 (469)
T ss_pred eEEEeccCCCCcccCcCCccCCc---cHHHHHHHHHHHHHHhCcceeEeecCchHHHHHHHHHhhcchhhhH
Confidence 36889999999999887666553 7899999999999999999999999999999999999999999975
No 97
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.78 E-value=0.00024 Score=69.98 Aligned_cols=66 Identities=17% Similarity=0.083 Sum_probs=46.4
Q ss_pred EEEEcCCCCCCCCCCC----CCCCCCCCHHHHHHHHHHHHhhhCC-C--cEEEEEEcHHHHHHHHHHHhCcCccc
Q psy5044 150 VYHVNAPGQEEGAQPL----ADDYIYPTMDELSNQLLFVLSYFGL-H--SVIGLGVGAGGNILARFALSHLWYCS 217 (219)
Q Consensus 150 vIavDlpGHG~s~s~~----~~~~~~~Smd~lA~dL~~lLd~LgI-~--~~~lvG~SmGG~IAl~fA~~~P~RV~ 217 (219)
|+.++.||-++-...+ ...+....++|+-+.+. ++.+.++ + ++.+.|+|+|||.++..+.+.| +++
T Consensus 426 V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~ 498 (620)
T COG1506 426 VLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVD-ALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFK 498 (620)
T ss_pred EEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHH-HHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhh
Confidence 3999999886421111 10111236788877777 6667665 4 7999999999999999999888 544
No 98
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=97.74 E-value=9e-05 Score=62.76 Aligned_cols=45 Identities=18% Similarity=0.095 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhh-hCCCc--EEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 174 MDELSNQLLFVLSY-FGLHS--VIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 174 md~lA~dL~~lLd~-LgI~~--~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
.+-++++|...+++ +.+.+ -.++|+||||+.|+.+|++||+.+++
T Consensus 95 ~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~ 142 (251)
T PF00756_consen 95 ETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGA 142 (251)
T ss_dssp HHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESE
T ss_pred ceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCcccccc
Confidence 34566676666644 45533 58999999999999999999998764
No 99
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=97.73 E-value=1.5e-05 Score=72.69 Aligned_cols=42 Identities=55% Similarity=0.977 Sum_probs=33.4
Q ss_pred cccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCC
Q psy5044 121 CYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGA 162 (219)
Q Consensus 121 ~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~ 162 (219)
.=|.-...+|||+.|||.++|+.|.++|.++++|.|||+.++
T Consensus 29 ~HDvGlNh~scF~~ff~~~~m~~i~~~f~i~Hi~aPGqe~ga 70 (283)
T PF03096_consen 29 YHDVGLNHKSCFQGFFNFEDMQEILQNFCIYHIDAPGQEEGA 70 (283)
T ss_dssp E--TT--HHHHCHHHHCSHHHHHHHTTSEEEEEE-TTTSTT-
T ss_pred eccccccchHHHHHHhcchhHHHHhhceEEEEEeCCCCCCCc
Confidence 335555689999999999999999999999999999998765
No 100
>KOG2931|consensus
Probab=97.73 E-value=1.7e-05 Score=73.13 Aligned_cols=43 Identities=56% Similarity=0.917 Sum_probs=38.3
Q ss_pred ccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCC
Q psy5044 120 ICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGA 162 (219)
Q Consensus 120 ~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~ 162 (219)
+.-|..-..+||||.|||+++|+.|.++|+++++|.|||..++
T Consensus 51 TyhDlglN~~scFq~ff~~p~m~ei~~~fcv~HV~~PGqe~gA 93 (326)
T KOG2931|consen 51 TYHDLGLNHKSCFQGFFNFPDMAEILEHFCVYHVDAPGQEDGA 93 (326)
T ss_pred EecccccchHhHhHHhhcCHhHHHHHhheEEEecCCCccccCC
Confidence 4456666789999999999999999999999999999998764
No 101
>KOG1838|consensus
Probab=97.70 E-value=0.00077 Score=64.37 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=55.3
Q ss_pred hhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcc
Q psy5044 144 LLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYC 216 (219)
Q Consensus 144 L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV 216 (219)
+...+||+....||+|+++-..|.-|.+-.-+|+.+.+.-+-+.+=-.+...||.||||+|...|-..-.++-
T Consensus 151 ~~~G~r~VVfN~RG~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P~a~l~avG~S~Gg~iL~nYLGE~g~~~ 223 (409)
T KOG1838|consen 151 QRKGYRVVVFNHRGLGGSKLTTPRLFTAGWTEDLREVVNHIKKRYPQAPLFAVGFSMGGNILTNYLGEEGDNT 223 (409)
T ss_pred HhCCcEEEEECCCCCCCCccCCCceeecCCHHHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHhhhccCCC
Confidence 4455677999999998765544433333466788777777777777778999999999999999988766554
No 102
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.66 E-value=0.00025 Score=63.69 Aligned_cols=57 Identities=23% Similarity=0.407 Sum_probs=46.2
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCC-CcEEEEEEcHHHHHHHHHHHh
Q psy5044 149 SVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGL-HSVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI-~~~~lvG~SmGG~IAl~fA~~ 211 (219)
+|+.++.||.+.... ...|++++|+...+-|.+..= .+.+++|||+||++|...|.+
T Consensus 28 ~v~~l~a~g~~~~~~------~~~~l~~~a~~yv~~Ir~~QP~GPy~L~G~S~GG~vA~evA~q 85 (257)
T COG3319 28 PVYGLQAPGYGAGEQ------PFASLDDMAAAYVAAIRRVQPEGPYVLLGWSLGGAVAFEVAAQ 85 (257)
T ss_pred eeeccccCccccccc------ccCCHHHHHHHHHHHHHHhCCCCCEEEEeeccccHHHHHHHHH
Confidence 349999999974332 223899999998888887754 689999999999999999975
No 103
>PRK10115 protease 2; Provisional
Probab=97.63 E-value=0.00053 Score=68.69 Aligned_cols=70 Identities=19% Similarity=0.116 Sum_probs=51.7
Q ss_pred ceEEEEcCCCCCCCCCCCCC----CCCCCCHHHHHHHHHHHHhhhCC---CcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 148 FSVYHVNAPGQEEGAQPLAD----DYIYPTMDELSNQLLFVLSYFGL---HSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~~----~~~~~Smd~lA~dL~~lLd~LgI---~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+.|+.+..||-|+-...+-. ..+.-+++|+.+.+..+++. |+ +++.+.|-|+||+++.+.+.++|+++++
T Consensus 475 ~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~-g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A 551 (686)
T PRK10115 475 FVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKL-GYGSPSLCYGMGGSAGGMLMGVAINQRPELFHG 551 (686)
T ss_pred cEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCChHHeEEEEECHHHHHHHHHHhcChhheeE
Confidence 33499999998653321110 11123789998888877766 54 6799999999999999999999999876
No 104
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=97.56 E-value=0.0004 Score=59.34 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcC
Q psy5044 173 TMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLW 214 (219)
Q Consensus 173 Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~ 214 (219)
+.++..+.+.++++...-+.+.++|.||||+.|..+|.+++-
T Consensus 41 ~p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~ 82 (187)
T PF05728_consen 41 FPEEAIAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGL 82 (187)
T ss_pred CHHHHHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCC
Confidence 346677888999999888889999999999999999998854
No 105
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=97.55 E-value=0.00027 Score=61.79 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHH
Q psy5044 173 TMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 173 Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~ 210 (219)
|-+.|++-|..+.+..+.+++++++||||+++.+....
T Consensus 75 s~~~l~~~L~~L~~~~~~~~I~ilaHSMG~rv~~~aL~ 112 (233)
T PF05990_consen 75 SGPALARFLRDLARAPGIKRIHILAHSMGNRVLLEALR 112 (233)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEEeCchHHHHHHHHH
Confidence 45566666666666668999999999999999887644
No 106
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=97.53 E-value=0.00089 Score=63.36 Aligned_cols=45 Identities=13% Similarity=-0.001 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhh-----CCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 174 MDELSNQLLFVLSYF-----GLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 174 md~lA~dL~~lLd~L-----gI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
.+.++++|.-.+++. +-++..++|.||||+.|+..|++||+++..
T Consensus 266 ~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~ 315 (411)
T PRK10439 266 WLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGC 315 (411)
T ss_pred HHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccE
Confidence 345667776667664 335688999999999999999999999864
No 107
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=97.48 E-value=0.00093 Score=61.30 Aligned_cols=115 Identities=13% Similarity=0.149 Sum_probs=60.8
Q ss_pred CCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceEEEecCCCCCCCCCCcccccccchhhHHHHHHhcCccccccC
Q psy5044 45 NRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDVTQHPLALLMIIRHYGMDICYDT 124 (219)
Q Consensus 45 ~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v~hv~~pG~~~~a~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 124 (219)
++..|+||.+||-|.+...++. .+.--...+.|+.+|+.||....++.... .
T Consensus 80 ~~~~Pavv~~hGyg~~~~~~~~------~~~~a~~G~~vl~~d~rGqg~~~~d~~~~-~--------------------- 131 (320)
T PF05448_consen 80 KGKLPAVVQFHGYGGRSGDPFD------LLPWAAAGYAVLAMDVRGQGGRSPDYRGS-S--------------------- 131 (320)
T ss_dssp SSSEEEEEEE--TT--GGGHHH------HHHHHHTT-EEEEE--TTTSSSS-B-SSB-S---------------------
T ss_pred CCCcCEEEEecCCCCCCCCccc------ccccccCCeEEEEecCCCCCCCCCCcccc-C---------------------
Confidence 4678899999999998665332 22333456899888999988666653111 0
Q ss_pred CCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHhhh------CCCcEEEEE
Q psy5044 125 DHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEG-AQPLADDYIYPTMDELSNQLLFVLSYF------GLHSVIGLG 197 (219)
Q Consensus 125 ~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s-~s~~~~~~~~~Smd~lA~dL~~lLd~L------gI~~~~lvG 197 (219)
.....||-.- -...++. + -+..+..|+.+.+|.+ +-+++.+.|
T Consensus 132 ---------------------------~~~~~g~~~~g~~~~~e~--~-yyr~~~~D~~ravd~l~slpevD~~rI~v~G 181 (320)
T PF05448_consen 132 ---------------------------GGTLKGHITRGIDDNPED--Y-YYRRVYLDAVRAVDFLRSLPEVDGKRIGVTG 181 (320)
T ss_dssp ---------------------------SS-SSSSTTTTTTS-TTT----HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred ---------------------------CCCCccHHhcCccCchHH--H-HHHHHHHHHHHHHHHHHhCCCcCcceEEEEe
Confidence 0012233110 0011222 1 2344445555555444 236789999
Q ss_pred EcHHHHHHHHHHHhCcCcccC
Q psy5044 198 VGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 198 ~SmGG~IAl~fA~~~P~RV~~ 218 (219)
.|.||.+++..|+..| ||++
T Consensus 182 ~SqGG~lal~~aaLd~-rv~~ 201 (320)
T PF05448_consen 182 GSQGGGLALAAAALDP-RVKA 201 (320)
T ss_dssp ETHHHHHHHHHHHHSS-T-SE
T ss_pred ecCchHHHHHHHHhCc-cccE
Confidence 9999999999999875 5664
No 108
>KOG1552|consensus
Probab=97.42 E-value=0.0017 Score=58.79 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=41.3
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-hhhC-CCcEEEEEEcHHHHHHHHHHHhCc
Q psy5044 148 FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVL-SYFG-LHSVIGLGVGAGGNILARFALSHL 213 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lL-d~Lg-I~~~~lvG~SmGG~IAl~fA~~~P 213 (219)
+.++.+|.+|.|.|.- .|.+ . .+-+=++.+-+.| +..| .+++++.|+|||+..++.+|.++|
T Consensus 89 ~nv~~~DYSGyG~S~G-~psE-~--n~y~Di~avye~Lr~~~g~~~~Iil~G~SiGt~~tv~Lasr~~ 152 (258)
T KOG1552|consen 89 CNVVSYDYSGYGRSSG-KPSE-R--NLYADIKAVYEWLRNRYGSPERIILYGQSIGTVPTVDLASRYP 152 (258)
T ss_pred ceEEEEecccccccCC-Cccc-c--cchhhHHHHHHHHHhhcCCCceEEEEEecCCchhhhhHhhcCC
Confidence 3569999999987542 2221 1 1222222233333 2333 789999999999999999999998
No 109
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=97.41 E-value=0.00042 Score=62.54 Aligned_cols=64 Identities=14% Similarity=0.012 Sum_probs=43.6
Q ss_pred EEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh-------CCCcEEEEEEcHHHHHHHHHHHhC-----cCcccC
Q psy5044 151 YHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYF-------GLHSVIGLGVGAGGNILARFALSH-----LWYCSL 218 (219)
Q Consensus 151 IavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~L-------gI~~~~lvG~SmGG~IAl~fA~~~-----P~RV~~ 218 (219)
|++|+...+.... .. ..-++.++.+|+.+=|++. ++.++.++|||-||-+|..+|+.+ +.++++
T Consensus 48 V~~d~~~~~~~~~-~~---~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~a 123 (259)
T PF12740_consen 48 VAPDLYSIGGPDD-TD---EVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSA 123 (259)
T ss_pred EEecccccCCCCc-ch---hHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeE
Confidence 9999666532111 11 1125677777766644433 667899999999999999999988 556654
No 110
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=97.38 E-value=0.00054 Score=67.71 Aligned_cols=73 Identities=14% Similarity=0.092 Sum_probs=59.0
Q ss_pred hhhhh--hhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh----CCCcEEEEEEcHHHHHHHH----H
Q psy5044 139 SDMRS--LLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYF----GLHSVIGLGVGAGGNILAR----F 208 (219)
Q Consensus 139 ~~~~~--L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~L----gI~~~~lvG~SmGG~IAl~----f 208 (219)
.+|.. +.+.+.|+.+|.+.=+... +..+++++.+.|.+.++.. |-++++++|+||||.+++. |
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~-------r~~~ldDYv~~i~~Ald~V~~~tG~~~vnl~GyC~GGtl~a~~~a~~ 309 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAH-------REWGLSTYVDALKEAVDAVRAITGSRDLNLLGACAGGLTCAALVGHL 309 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhh-------cCCCHHHHHHHHHHHHHHHHHhcCCCCeeEEEECcchHHHHHHHHHH
Confidence 56664 7889999999988764321 3458999998888777776 6899999999999999986 8
Q ss_pred HHhCcC-cccC
Q psy5044 209 ALSHLW-YCSL 218 (219)
Q Consensus 209 A~~~P~-RV~~ 218 (219)
|+++++ ||++
T Consensus 310 aA~~~~~~V~s 320 (560)
T TIGR01839 310 QALGQLRKVNS 320 (560)
T ss_pred HhcCCCCceee
Confidence 999996 7875
No 111
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=97.36 E-value=0.00036 Score=58.53 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhh---C---CCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 175 DELSNQLLFVLSYF---G---LHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 175 d~lA~dL~~lLd~L---g---I~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+..++++.+.++.| . .+++-++|+|+||.+++.+|.+. +++++
T Consensus 76 ~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a 124 (218)
T PF01738_consen 76 EQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDA 124 (218)
T ss_dssp HHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSE
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccce
Confidence 45566665555555 2 46899999999999999999877 55543
No 112
>KOG2624|consensus
Probab=97.30 E-value=0.0011 Score=63.09 Aligned_cols=128 Identities=20% Similarity=0.235 Sum_probs=80.4
Q ss_pred cccCCCCceeEEEEeCCccE---EEEEecCCCCCEEEEeCCCCCChhhhhhcccChh--hHHHhhccceEEEecCCCCCC
Q psy5044 19 LARTDPTVEEVYVETDRGSI---LVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFS--DMRSLLENFSVYHVNAPGQEE 93 (219)
Q Consensus 19 ~~~~~~~~~e~~i~t~~g~~---~v~~~G~~~~p~il~~Hd~G~n~~~~~~~~~~~~--~~~~l~~~~~v~hv~~pG~~~ 93 (219)
...+.-.+|+|.|+|..|.+ |=.-++++.|||+++.||+=.++.+ |. .|-| ..+-++..
T Consensus 41 i~~~gy~~E~h~V~T~DgYiL~lhRIp~~~~~rp~Vll~HGLl~sS~~-Wv--~n~p~~sLaf~Lad------------- 104 (403)
T KOG2624|consen 41 IEKYGYPVEEHEVTTEDGYILTLHRIPRGKKKRPVVLLQHGLLASSSS-WV--LNGPEQSLAFLLAD------------- 104 (403)
T ss_pred HHHcCCceEEEEEEccCCeEEEEeeecCCCCCCCcEEEeecccccccc-ce--ecCccccHHHHHHH-------------
Confidence 34455779999999999952 2222335889999999999988764 53 2221 12222111
Q ss_pred CCCCcccccccchhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCC--CCC--CC
Q psy5044 94 GAQPLADDVTQHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQP--LAD--DY 169 (219)
Q Consensus 94 ~a~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~--~~~--~~ 169 (219)
+.|.|..-..||-.-|..- ..+ ..
T Consensus 105 ----------------------------------------------------aGYDVWLgN~RGn~ySr~h~~l~~~~~~ 132 (403)
T KOG2624|consen 105 ----------------------------------------------------AGYDVWLGNNRGNTYSRKHKKLSPSSDK 132 (403)
T ss_pred ----------------------------------------------------cCCceeeecCcCcccchhhcccCCcCCc
Confidence 1223355555653222210 000 00
Q ss_pred CC--C-----CHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcC
Q psy5044 170 IY--P-----TMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLW 214 (219)
Q Consensus 170 ~~--~-----Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~ 214 (219)
.+ . .+.|+.+.|.-+|+.-+-++.+.+|||-|+.+........|+
T Consensus 133 ~FW~FS~~Em~~yDLPA~IdyIL~~T~~~kl~yvGHSQGtt~~fv~lS~~p~ 184 (403)
T KOG2624|consen 133 EFWDFSWHEMGTYDLPAMIDYILEKTGQEKLHYVGHSQGTTTFFVMLSERPE 184 (403)
T ss_pred ceeecchhhhhhcCHHHHHHHHHHhccccceEEEEEEccchhheehhcccch
Confidence 01 2 345567788888888899999999999999999988887765
No 113
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=97.30 E-value=0.0039 Score=59.45 Aligned_cols=66 Identities=11% Similarity=0.039 Sum_probs=48.7
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhC-----cCcccC
Q psy5044 148 FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSH-----LWYCSL 218 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~-----P~RV~~ 218 (219)
+.|+.+|-.==+ ..+... ...+++|+.+-|.+.++++|-+ ++++|+++||..++.+++.+ |+++++
T Consensus 130 ~dVYl~DW~~p~--~vp~~~--~~f~ldDYi~~l~~~i~~~G~~-v~l~GvCqgG~~~laa~Al~a~~~~p~~~~s 200 (406)
T TIGR01849 130 HDVYITDWVNAR--MVPLSA--GKFDLEDYIDYLIEFIRFLGPD-IHVIAVCQPAVPVLAAVALMAENEPPAQPRS 200 (406)
T ss_pred CcEEEEeCCCCC--CCchhc--CCCCHHHHHHHHHHHHHHhCCC-CcEEEEchhhHHHHHHHHHHHhcCCCCCcce
Confidence 334888864221 111112 3459999999999999999988 99999999999988888776 555654
No 114
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.24 E-value=0.0025 Score=56.00 Aligned_cols=66 Identities=15% Similarity=0.104 Sum_probs=46.5
Q ss_pred CceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCc--EEEEEEcHHHHHHHHHHHhCcCc
Q psy5044 147 NFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHS--VIGLGVGAGGNILARFALSHLWY 215 (219)
Q Consensus 147 ~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~--~~lvG~SmGG~IAl~fA~~~P~R 215 (219)
.+.++++|.||-|+|+-.+..+.. -++|.+ .+.+++.+..-+. +-+.|+|.||+|++++|.+.|+-
T Consensus 60 G~atlRfNfRgVG~S~G~fD~GiG--E~~Da~-aaldW~~~~hp~s~~~~l~GfSFGa~Ia~~la~r~~e~ 127 (210)
T COG2945 60 GFATLRFNFRGVGRSQGEFDNGIG--ELEDAA-AALDWLQARHPDSASCWLAGFSFGAYIAMQLAMRRPEI 127 (210)
T ss_pred CceEEeecccccccccCcccCCcc--hHHHHH-HHHHHHHhhCCCchhhhhcccchHHHHHHHHHHhcccc
Confidence 345599999999988877766532 234433 3344555554443 45899999999999999999763
No 115
>KOG4667|consensus
Probab=97.20 E-value=0.00071 Score=60.68 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=72.7
Q ss_pred chhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhh-cCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy5044 105 HPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLL-ENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLF 183 (219)
Q Consensus 105 ~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~-~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~ 183 (219)
+.|.++.+++..|-.-++=.-|+-.|.=++-+-=.-...|. ..+.+.++|.+|.|+|+-++..+ .....|+||..
T Consensus 19 ~ne~lvg~lh~tgs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~G----n~~~eadDL~s 94 (269)
T KOG4667|consen 19 RNEKLVGLLHETGSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYYG----NYNTEADDLHS 94 (269)
T ss_pred CCchhhcceeccCCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccccC----cccchHHHHHH
Confidence 46777888887776544433344333322222222222343 47889999999999887665443 33667799999
Q ss_pred HHhhhC-CCc--EEEEEEcHHHHHHHHHHHhCcC
Q psy5044 184 VLSYFG-LHS--VIGLGVGAGGNILARFALSHLW 214 (219)
Q Consensus 184 lLd~Lg-I~~--~~lvG~SmGG~IAl~fA~~~P~ 214 (219)
++.++. ..+ -+++|||=||.+++.||.++++
T Consensus 95 V~q~~s~~nr~v~vi~gHSkGg~Vvl~ya~K~~d 128 (269)
T KOG4667|consen 95 VIQYFSNSNRVVPVILGHSKGGDVVLLYASKYHD 128 (269)
T ss_pred HHHHhccCceEEEEEEeecCccHHHHHHHHhhcC
Confidence 999984 333 3688999999999999999987
No 116
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=97.15 E-value=0.00032 Score=64.75 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhh----h--CCCcEEEEEEcHHHHHHHHHHHhCcC
Q psy5044 175 DELSNQLLFVLSY----F--GLHSVIGLGVGAGGNILARFALSHLW 214 (219)
Q Consensus 175 d~lA~dL~~lLd~----L--gI~~~~lvG~SmGG~IAl~fA~~~P~ 214 (219)
...++.|..+|+. . ..+++|++|||+||.||...+.+...
T Consensus 128 ~~vg~~la~~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~ 173 (331)
T PF00151_consen 128 RLVGRQLAKFLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKG 173 (331)
T ss_dssp HHHHHHHHHHHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccC
Confidence 3444444444443 3 45899999999999999988877655
No 117
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=97.13 E-value=0.0011 Score=60.73 Aligned_cols=58 Identities=17% Similarity=-0.011 Sum_probs=41.2
Q ss_pred EEEcCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHhhh-------CCCcEEEEEEcHHHHHHHHHHHhCc
Q psy5044 151 YHVNAPGQEEGAQPLADDYIY-PTMDELSNQLLFVLSYF-------GLHSVIGLGVGAGGNILARFALSHL 213 (219)
Q Consensus 151 IavDlpGHG~s~s~~~~~~~~-~Smd~lA~dL~~lLd~L-------gI~~~~lvG~SmGG~IAl~fA~~~P 213 (219)
+|+++-.- .. +.++.. -+....++|+.+-|.++ ++.+..++|||.||-.|.++|+.|.
T Consensus 77 VAPQl~~~--~~---p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a 142 (307)
T PF07224_consen 77 VAPQLYTL--FP---PDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYA 142 (307)
T ss_pred Eechhhcc--cC---CCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhccc
Confidence 88887643 11 111111 24566777777777665 6788999999999999999999885
No 118
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=97.08 E-value=0.0011 Score=57.03 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhhCCC--cEEEEEEcHHHHHHHHHHHh
Q psy5044 175 DELSNQLLFVLSYFGLH--SVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI~--~~~lvG~SmGG~IAl~fA~~ 211 (219)
+++|++|.+.++....+ +++++||||||.|+- +|+.
T Consensus 60 ~rL~~eI~~~~~~~~~~~~~IsfIgHSLGGli~r-~al~ 97 (217)
T PF05057_consen 60 ERLAEEILEHIKDYESKIRKISFIGHSLGGLIAR-YALG 97 (217)
T ss_pred HHHHHHHHHhccccccccccceEEEecccHHHHH-HHHH
Confidence 45666666666666654 899999999999985 5544
No 119
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.05 E-value=0.003 Score=59.00 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=51.2
Q ss_pred eEEEEcCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHhhhC--C-----CcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 149 SVYHVNAPGQEEGAQPL---ADDYIYPTMDELSNQLLFVLSYFG--L-----HSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~---~~~~~~~Smd~lA~dL~~lLd~Lg--I-----~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
-+|.+.+|=.|+|.+-. .+..+|.|.++--+|++.+++++. . .+++++|-|+||++|..+-.+||+.+.+
T Consensus 61 ~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~g 140 (434)
T PF05577_consen 61 LVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDG 140 (434)
T ss_dssp EEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SE
T ss_pred cEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEE
Confidence 35999999999876411 134578999999999999998775 2 2699999999999999999999998764
No 120
>KOG1515|consensus
Probab=97.03 E-value=0.0086 Score=55.81 Aligned_cols=57 Identities=28% Similarity=0.239 Sum_probs=41.7
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh------hCCCcEEEEEEcHHHHHHHHHHHhC
Q psy5044 149 SVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSY------FGLHSVIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~------LgI~~~~lvG~SmGG~IAl~fA~~~ 212 (219)
.|+.||.|=--+ .++|+. ++|.-+.+.-++++ .+.+++.++|-|.||+||...|.|.
T Consensus 125 vvvSVdYRLAPE--h~~Pa~-----y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~ 187 (336)
T KOG1515|consen 125 VVVSVDYRLAPE--HPFPAA-----YDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRA 187 (336)
T ss_pred EEEecCcccCCC--CCCCcc-----chHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHH
Confidence 459999884422 144543 47777777766664 3668899999999999999999865
No 121
>KOG4391|consensus
Probab=97.03 E-value=0.00094 Score=60.17 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=47.5
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh------CCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 149 SVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYF------GLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~L------gI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
.|..++.||.|+|.-+ | |-+-|--|-.++||++ .-.+.++.|-|+||.+|..+|.+..+|+.+
T Consensus 108 nv~ivsYRGYG~S~Gs-p------sE~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~ 176 (300)
T KOG4391|consen 108 NVLIVSYRGYGKSEGS-P------SEEGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISA 176 (300)
T ss_pred eEEEEEeeccccCCCC-c------cccceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheee
Confidence 4599999999976532 2 3344445555666655 335689999999999999999999999875
No 122
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=96.96 E-value=0.0022 Score=49.78 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhC
Q psy5044 174 MDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 174 md~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~ 212 (219)
.+++.+.|.+++++..-.++++.|||+||.+|..+|+..
T Consensus 47 ~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~l 85 (140)
T PF01764_consen 47 YDQILDALKELVEKYPDYSIVITGHSLGGALASLAAADL 85 (140)
T ss_dssp HHHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCccchhhccchHHHHHHHHHHhh
Confidence 467788888888888878899999999999999999864
No 123
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=96.95 E-value=0.0034 Score=59.71 Aligned_cols=74 Identities=15% Similarity=0.074 Sum_probs=43.6
Q ss_pred hhcCceEEEEcCCCCCCCCCCCCCCCCC-CCHHHHHHHH---------------HHHHhhh------CCCcEEEEEEcHH
Q psy5044 144 LLENFSVYHVNAPGQEEGAQPLADDYIY-PTMDELSNQL---------------LFVLSYF------GLHSVIGLGVGAG 201 (219)
Q Consensus 144 L~~~~rvIavDlpGHG~s~s~~~~~~~~-~Smd~lA~dL---------------~~lLd~L------gI~~~~lvG~SmG 201 (219)
-...|-|+++|.+|.|+..........+ .+.+.+|..+ .+++|.| .-+++-++|+|||
T Consensus 157 Ak~GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmG 236 (390)
T PF12715_consen 157 AKRGYVVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMG 236 (390)
T ss_dssp HTTTSEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGG
T ss_pred HhCCCEEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeeccc
Confidence 3557889999999999854322211111 2455565533 2344444 2367889999999
Q ss_pred HHHHHHHHHhCcCcccC
Q psy5044 202 GNILARFALSHLWYCSL 218 (219)
Q Consensus 202 G~IAl~fA~~~P~RV~~ 218 (219)
|+.++.+|+.- +||++
T Consensus 237 g~~a~~LaALD-dRIka 252 (390)
T PF12715_consen 237 GYRAWWLAALD-DRIKA 252 (390)
T ss_dssp HHHHHHHHHH--TT--E
T ss_pred HHHHHHHHHcc-hhhHh
Confidence 99999999875 66654
No 124
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=96.67 E-value=0.0071 Score=52.89 Aligned_cols=69 Identities=12% Similarity=0.029 Sum_probs=44.7
Q ss_pred hcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh---CC--CcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 145 LENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYF---GL--HSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 145 ~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~L---gI--~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
...|-||.+|.||.|.|.=... +...+-++|..++++=+ .. .++-..|.|++|+.++..|...|.++++
T Consensus 55 ~~GY~vV~~D~RG~g~S~G~~~-----~~~~~e~~D~~d~I~W~~~Qpws~G~VGm~G~SY~G~~q~~~A~~~~p~LkA 128 (272)
T PF02129_consen 55 ERGYAVVVQDVRGTGGSEGEFD-----PMSPNEAQDGYDTIEWIAAQPWSNGKVGMYGISYGGFTQWAAAARRPPHLKA 128 (272)
T ss_dssp HTT-EEEEEE-TTSTTS-S-B------TTSHHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTTT-TTEEE
T ss_pred hCCCEEEEECCcccccCCCccc-----cCChhHHHHHHHHHHHHHhCCCCCCeEEeeccCHHHHHHHHHHhcCCCCceE
Confidence 3455559999999986542221 11344555555555444 32 4788999999999999999988888875
No 125
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=96.62 E-value=0.0046 Score=56.87 Aligned_cols=61 Identities=16% Similarity=0.074 Sum_probs=47.8
Q ss_pred EEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCc--Cccc
Q psy5044 151 YHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHL--WYCS 217 (219)
Q Consensus 151 IavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P--~RV~ 217 (219)
+.++.++-. . ..+ ....-+.+-.-|.+++...+.+++.++||||||.+...|+..++ .+|+
T Consensus 93 ~~~~~~~~~--~-~~~---~~~~~~ql~~~V~~~l~~~ga~~v~LigHS~GG~~~ry~~~~~~~~~~V~ 155 (336)
T COG1075 93 YAFELSGGD--G-TYS---LAVRGEQLFAYVDEVLAKTGAKKVNLIGHSMGGLDSRYYLGVLGGANRVA 155 (336)
T ss_pred ccccccccC--C-Ccc---ccccHHHHHHHHHHHHhhcCCCceEEEeecccchhhHHHHhhcCccceEE
Confidence 677777651 1 111 12367899999999999999999999999999999999998888 5654
No 126
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=96.60 E-value=0.0047 Score=50.77 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=48.9
Q ss_pred hhhhhhhh--cCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh-----hCCCcEEEEEEcHHHHHHHHHHH
Q psy5044 138 FSDMRSLL--ENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSY-----FGLHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 138 w~~~~~L~--~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~-----LgI~~~~lvG~SmGG~IAl~fA~ 210 (219)
|.....|. ..+.|+.+|.|=-.+. +.+ . .++|..+.+.-++++ .+.++++++|.|.||.+|+.++.
T Consensus 18 ~~~~~~la~~~g~~v~~~~Yrl~p~~--~~p----~-~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~~ 90 (211)
T PF07859_consen 18 WPFAARLAAERGFVVVSIDYRLAPEA--PFP----A-ALEDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLAL 90 (211)
T ss_dssp HHHHHHHHHHHTSEEEEEE---TTTS--STT----H-HHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHhhccEEEEEeeccccccc--ccc----c-cccccccceeeeccccccccccccceEEeecccccchhhhhhh
Confidence 55555544 4889999999833111 111 1 578888888888887 56689999999999999999998
Q ss_pred hCcC
Q psy5044 211 SHLW 214 (219)
Q Consensus 211 ~~P~ 214 (219)
+..+
T Consensus 91 ~~~~ 94 (211)
T PF07859_consen 91 RARD 94 (211)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 6544
No 127
>KOG2112|consensus
Probab=96.60 E-value=0.0031 Score=55.37 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHhhh---CC--CcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 173 TMDELSNQLLFVLSYF---GL--HSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 173 Smd~lA~dL~~lLd~L---gI--~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
++..-|+.+..++++. || .++.+.|.||||.+++..+..+|..+.+
T Consensus 70 ~~~~aa~~i~~Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G 120 (206)
T KOG2112|consen 70 GLHRAADNIANLIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGG 120 (206)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccce
Confidence 6777788888888765 54 5789999999999999999999876654
No 128
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=96.54 E-value=0.0078 Score=61.37 Aligned_cols=70 Identities=14% Similarity=0.050 Sum_probs=49.8
Q ss_pred hhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhC--------------------CCcEEEEEEcHHHH
Q psy5044 144 LLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFG--------------------LHSVIGLGVGAGGN 203 (219)
Q Consensus 144 L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~Lg--------------------I~~~~lvG~SmGG~ 203 (219)
+...|.|+.+|.||.|+|.-.... .. .+-+++..++++-+. =+++-..|.||||+
T Consensus 276 ~~rGYaVV~~D~RGtg~SeG~~~~----~~-~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~G~ 350 (767)
T PRK05371 276 LPRGFAVVYVSGIGTRGSDGCPTT----GD-YQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSYLGT 350 (767)
T ss_pred HhCCeEEEEEcCCCCCCCCCcCcc----CC-HHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcHHHH
Confidence 567999999999999875432111 01 223344444444443 36899999999999
Q ss_pred HHHHHHHhCcCcccC
Q psy5044 204 ILARFALSHLWYCSL 218 (219)
Q Consensus 204 IAl~fA~~~P~RV~~ 218 (219)
+++..|...|..+++
T Consensus 351 ~~~~aAa~~pp~LkA 365 (767)
T PRK05371 351 LPNAVATTGVEGLET 365 (767)
T ss_pred HHHHHHhhCCCcceE
Confidence 999999999888775
No 129
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=96.45 E-value=0.0052 Score=49.11 Aligned_cols=42 Identities=19% Similarity=0.067 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhh----CCCcEEEEEEcHHHHHHHHHHHhCcCc
Q psy5044 174 MDELSNQLLFVLSYF----GLHSVIGLGVGAGGNILARFALSHLWY 215 (219)
Q Consensus 174 md~lA~dL~~lLd~L----gI~~~~lvG~SmGG~IAl~fA~~~P~R 215 (219)
...++..+.+.++.. .-.+++++||||||.+|..+|+..+.+
T Consensus 7 ~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~lA~l~a~~~~~~ 52 (153)
T cd00741 7 ARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGR 52 (153)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHHHHHHHHHHHhc
Confidence 455666666666554 578999999999999999999987653
No 130
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=96.43 E-value=0.019 Score=50.90 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=42.4
Q ss_pred cCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh---hC--CCcEEEEEEcHHHHHHHHHHHhCcC
Q psy5044 146 ENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSY---FG--LHSVIGLGVGAGGNILARFALSHLW 214 (219)
Q Consensus 146 ~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~---Lg--I~~~~lvG~SmGG~IAl~fA~~~P~ 214 (219)
..+.|+.+|.|=--+. ++|. .++|..+.+..+.++ +| -+++.++|.|+||++++.+|..-.+
T Consensus 109 ~g~~vv~vdYrlaPe~--~~p~-----~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~ 175 (312)
T COG0657 109 AGAVVVSVDYRLAPEH--PFPA-----ALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARD 175 (312)
T ss_pred cCCEEEecCCCCCCCC--CCCc-----hHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHh
Confidence 4556699999855322 2332 567755555555544 45 4789999999999999999986544
No 131
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=96.39 E-value=0.033 Score=52.36 Aligned_cols=39 Identities=26% Similarity=0.209 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHhhhCC--CcEEEEEEcHHHHHHHHHHHh
Q psy5044 173 TMDELSNQLLFVLSYFGL--HSVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 173 Smd~lA~dL~~lLd~LgI--~~~~lvG~SmGG~IAl~fA~~ 211 (219)
.....-+||.+-++++|. ++++++|+|+||+.+..++..
T Consensus 156 D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~ 196 (493)
T cd00312 156 DQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLS 196 (493)
T ss_pred HHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhC
Confidence 444555777888888876 589999999999998888765
No 132
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.23 E-value=0.056 Score=50.20 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHhhhCCC--cEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 173 TMDELSNQLLFVLSYFGLH--SVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 173 Smd~lA~dL~~lLd~LgI~--~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
.+..+++.+..+..+.+|+ ++.+.|+|.||..+.+++..+|+.+++
T Consensus 124 dVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa 171 (312)
T COG3509 124 DVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAA 171 (312)
T ss_pred HHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccc
Confidence 4677888899999999998 899999999999999999999998875
No 133
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=96.21 E-value=0.01 Score=42.66 Aligned_cols=43 Identities=28% Similarity=0.334 Sum_probs=23.3
Q ss_pred cCCCCceeEEEEeCCccEE-E-EEecC-------CCCCEEEEeCCCCCChhh
Q psy5044 21 RTDPTVEEVYVETDRGSIL-V-AVAGN-------RGKPAILTYHDLGLNYIS 63 (219)
Q Consensus 21 ~~~~~~~e~~i~t~~g~~~-v-~~~G~-------~~~p~il~~Hd~G~n~~~ 63 (219)
+....+|||.|.|++|.+. + .+.++ +.|||+++.|+|..+..+
T Consensus 7 ~~GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~~ 58 (63)
T PF04083_consen 7 KHGYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSDD 58 (63)
T ss_dssp HTT---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GGG
T ss_pred HcCCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccChHH
Confidence 3457899999999999433 3 33332 479999999999999876
No 134
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=96.21 E-value=0.025 Score=47.34 Aligned_cols=45 Identities=13% Similarity=0.017 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHH-HhCcCcccC
Q psy5044 173 TMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFA-LSHLWYCSL 218 (219)
Q Consensus 173 Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA-~~~P~RV~~ 218 (219)
++++-.+.|.+.++... +.+++||||+|+..+++|+ .....+|++
T Consensus 38 ~~~~W~~~l~~~i~~~~-~~~ilVaHSLGc~~~l~~l~~~~~~~v~g 83 (171)
T PF06821_consen 38 DLDEWVQALDQAIDAID-EPTILVAHSLGCLTALRWLAEQSQKKVAG 83 (171)
T ss_dssp -HHHHHHHHHHCCHC-T-TTEEEEEETHHHHHHHHHHHHTCCSSEEE
T ss_pred CHHHHHHHHHHHHhhcC-CCeEEEEeCHHHHHHHHHHhhcccccccE
Confidence 45555555555544432 4599999999999999999 777877764
No 135
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=96.18 E-value=0.0057 Score=55.40 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=43.2
Q ss_pred hhcCceEEEEcCCCCCCCCCCCCCCCCC----CCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHH
Q psy5044 144 LLENFSVYHVNAPGQEEGAQPLADDYIY----PTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFA 209 (219)
Q Consensus 144 L~~~~rvIavDlpGHG~s~s~~~~~~~~----~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA 209 (219)
=++.|.|+..|+||.|+|+.....+.++ .-..|++..|..+=+.+.-.+..++|||+||.+.-.++
T Consensus 54 ~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~~~~~P~y~vgHS~GGqa~gL~~ 123 (281)
T COG4757 54 AKAGFEVLTFDYRGIGQSRPASLSGSQWRYLDWARLDFPAALAALKKALPGHPLYFVGHSFGGQALGLLG 123 (281)
T ss_pred hccCceEEEEecccccCCCccccccCccchhhhhhcchHHHHHHHHhhCCCCceEEeeccccceeecccc
Confidence 3568999999999999876544333222 22334444444444445556789999999998765443
No 136
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=95.94 E-value=0.03 Score=52.91 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=54.0
Q ss_pred CCccchhhh-------hchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh-----CC--Cc
Q psy5044 127 TNISNFQAF-------FNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYF-----GL--HS 192 (219)
Q Consensus 127 ~~~~~f~~~-------~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~L-----gI--~~ 192 (219)
+|-.||.+. .+|-.++.. .+..|+.+..||-|.|+. .+|.++|+.+-.+.++.| |+ +.
T Consensus 145 GNg~~~E~~~~~~~~~~~~~~~ak~-~~aNvl~fNYpGVg~S~G-------~~s~~dLv~~~~a~v~yL~d~~~G~ka~~ 216 (365)
T PF05677_consen 145 GNGECYENRAMLDYKDDWIQRFAKE-LGANVLVFNYPGVGSSTG-------PPSRKDLVKDYQACVRYLRDEEQGPKAKN 216 (365)
T ss_pred CChHHhhhhhhhccccHHHHHHHHH-cCCcEEEECCCccccCCC-------CCCHHHHHHHHHHHHHHHHhcccCCChhe
Confidence 366666662 356665543 456679999999986542 225688877766666665 34 77
Q ss_pred EEEEEEcHHHHHHHHHHHhC
Q psy5044 193 VIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 193 ~~lvG~SmGG~IAl~fA~~~ 212 (219)
.++-|||+||.|+.....++
T Consensus 217 Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 217 IILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred EEEeeccccHHHHHHHHHhc
Confidence 99999999999998854444
No 137
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.93 E-value=0.034 Score=51.40 Aligned_cols=26 Identities=15% Similarity=0.041 Sum_probs=21.6
Q ss_pred hhCCCcEEEEEEcHHHHHHHHHHHhC
Q psy5044 187 YFGLHSVIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 187 ~LgI~~~~lvG~SmGG~IAl~fA~~~ 212 (219)
.-.=+++.+.|.|-||.|+++.|+.-
T Consensus 172 ~vde~Ri~v~G~SqGGglalaaaal~ 197 (321)
T COG3458 172 EVDEERIGVTGGSQGGGLALAAAALD 197 (321)
T ss_pred ccchhheEEeccccCchhhhhhhhcC
Confidence 33457899999999999999988755
No 138
>KOG1553|consensus
Probab=95.73 E-value=0.024 Score=54.26 Aligned_cols=78 Identities=23% Similarity=0.292 Sum_probs=55.2
Q ss_pred hhchhhhh-hhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCC--CcEEEEEEcHHHHHHHHHHHh
Q psy5044 135 FFNFSDMR-SLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGL--HSVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 135 ~~nw~~~~-~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI--~~~~lvG~SmGG~IAl~fA~~ 211 (219)
||.=.-|. ++.-.|.|+-+.+||+++|. ..| |+.-+....-.-+.-.+..||. +..++-|||.||.-+++.|..
T Consensus 255 FYEvG~m~tP~~lgYsvLGwNhPGFagST-G~P--~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~ 331 (517)
T KOG1553|consen 255 FYEVGVMNTPAQLGYSVLGWNHPGFAGST-GLP--YPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASN 331 (517)
T ss_pred ceEeeeecChHHhCceeeccCCCCccccC-CCC--CcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhc
Confidence 55556676 68889999999999998654 232 1221222222223334566776 679999999999999999999
Q ss_pred CcCc
Q psy5044 212 HLWY 215 (219)
Q Consensus 212 ~P~R 215 (219)
||+-
T Consensus 332 YPdV 335 (517)
T KOG1553|consen 332 YPDV 335 (517)
T ss_pred CCCc
Confidence 9984
No 139
>KOG2100|consensus
Probab=95.72 E-value=0.079 Score=54.15 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=58.6
Q ss_pred chhhhhhhhcCceEEEEcCCCCCCCCCCC----CCCCCCCCHHHHHHHHHHHHhhhCC--CcEEEEEEcHHHHHHHHHHH
Q psy5044 137 NFSDMRSLLENFSVYHVNAPGQEEGAQPL----ADDYIYPTMDELSNQLLFVLSYFGL--HSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 137 nw~~~~~L~~~~rvIavDlpGHG~s~s~~----~~~~~~~Smd~lA~dL~~lLd~LgI--~~~~lvG~SmGG~IAl~fA~ 210 (219)
+|+....-...+.|+.+|-||-|.-...+ +.......++|.-..+..+++..-+ +++-+.|+|.||++++....
T Consensus 548 ~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~ 627 (755)
T KOG2100|consen 548 DWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLE 627 (755)
T ss_pred cHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhh
Confidence 55555556667788999999987543321 1111123677777777888777654 67999999999999999999
Q ss_pred hCcCccc
Q psy5044 211 SHLWYCS 217 (219)
Q Consensus 211 ~~P~RV~ 217 (219)
.+|+++.
T Consensus 628 ~~~~~~f 634 (755)
T KOG2100|consen 628 SDPGDVF 634 (755)
T ss_pred hCcCceE
Confidence 9997664
No 140
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=95.67 E-value=0.045 Score=51.81 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=22.7
Q ss_pred hhhCCCcEEEEEEcHHHHHHHHHHHhC
Q psy5044 186 SYFGLHSVIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 186 d~LgI~~~~lvG~SmGG~IAl~fA~~~ 212 (219)
++++..++-++|||.||+-++..+--+
T Consensus 154 ~~ld~~~Vgv~GhS~GG~T~m~laGA~ 180 (365)
T COG4188 154 GRLDPQRVGVLGHSFGGYTAMELAGAE 180 (365)
T ss_pred cccCccceEEEecccccHHHHHhcccc
Confidence 556778999999999999999887544
No 141
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=95.59 E-value=0.0066 Score=56.95 Aligned_cols=33 Identities=12% Similarity=-0.015 Sum_probs=23.4
Q ss_pred HHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCccc
Q psy5044 184 VLSYFGLHSVIGLGVGAGGNILARFALSHLWYCS 217 (219)
Q Consensus 184 lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~ 217 (219)
+-.+++++++.++|||.||..+++.+.+- .|++
T Consensus 221 ~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~ 253 (379)
T PF03403_consen 221 FKGRLDLSRIGLAGHSFGGATALQALRQD-TRFK 253 (379)
T ss_dssp GTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--
T ss_pred HhhhcchhheeeeecCchHHHHHHHHhhc-cCcc
Confidence 33556688999999999999999877655 5544
No 142
>COG3150 Predicted esterase [General function prediction only]
Probab=95.59 E-value=0.023 Score=49.24 Aligned_cols=58 Identities=14% Similarity=0.062 Sum_probs=46.4
Q ss_pred EEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCc
Q psy5044 151 YHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHL 213 (219)
Q Consensus 151 IavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P 213 (219)
+..|.|-++-+.... ...+...++.|.+++..++-++..+||.|+|||.|.+++.++.
T Consensus 24 ~~~~~~~i~y~~p~l-----~h~p~~a~~ele~~i~~~~~~~p~ivGssLGGY~At~l~~~~G 81 (191)
T COG3150 24 IDEDVRDIEYSTPHL-----PHDPQQALKELEKAVQELGDESPLIVGSSLGGYYATWLGFLCG 81 (191)
T ss_pred HhccccceeeecCCC-----CCCHHHHHHHHHHHHHHcCCCCceEEeecchHHHHHHHHHHhC
Confidence 555666665443222 2379999999999999999998999999999999999998873
No 143
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=95.52 E-value=0.037 Score=47.13 Aligned_cols=40 Identities=20% Similarity=0.071 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhC
Q psy5044 172 PTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 172 ~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~ 212 (219)
..+++-.+.|.+.++..|- -.-++|.|.||.+|..++...
T Consensus 84 ~~~~~sl~~l~~~i~~~GP-fdGvlGFSQGA~lAa~ll~~~ 123 (212)
T PF03959_consen 84 EGLDESLDYLRDYIEENGP-FDGVLGFSQGAALAALLLALQ 123 (212)
T ss_dssp ---HHHHHHHHHHHHHH----SEEEEETHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCC-eEEEEeecHHHHHHHHHHHHH
Confidence 3678888899999988774 335789999999999988743
No 144
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=95.33 E-value=0.034 Score=47.32 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=24.6
Q ss_pred HHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhC
Q psy5044 180 QLLFVLSYFGLHSVIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 180 dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~ 212 (219)
.+.+.+++..-.++++.||||||.+|..+|+..
T Consensus 117 ~~~~~~~~~p~~~i~vtGHSLGGaiA~l~a~~l 149 (229)
T cd00519 117 ELKSALKQYPDYKIIVTGHSLGGALASLLALDL 149 (229)
T ss_pred HHHHHHhhCCCceEEEEccCHHHHHHHHHHHHH
Confidence 334444444456899999999999999988854
No 145
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.14 E-value=0.043 Score=52.12 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHH
Q psy5044 173 TMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFA 209 (219)
Q Consensus 173 Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA 209 (219)
|-++|+.-|..+.+...+++++++.||||.++++...
T Consensus 173 Sr~aLe~~lr~La~~~~~~~I~ilAHSMGtwl~~e~L 209 (377)
T COG4782 173 SRPALERLLRYLATDKPVKRIYLLAHSMGTWLLMEAL 209 (377)
T ss_pred hHHHHHHHHHHHHhCCCCceEEEEEecchHHHHHHHH
Confidence 7899999999999999999999999999999887543
No 146
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=95.11 E-value=0.027 Score=51.51 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHhhh----CCCcEEEEEEcHHHHHHHHHHHhCc
Q psy5044 173 TMDELSNQLLFVLSYF----GLHSVIGLGVGAGGNILARFALSHL 213 (219)
Q Consensus 173 Smd~lA~dL~~lLd~L----gI~~~~lvG~SmGG~IAl~fA~~~P 213 (219)
|+.+.+.|+..+|..| +|+++.+|||||||.-+..|...|.
T Consensus 114 s~~~~s~wlk~~msyL~~~Y~i~k~n~VGhSmGg~~~~~Y~~~yg 158 (288)
T COG4814 114 SGLDQSKWLKKAMSYLQKHYNIPKFNAVGHSMGGLGLTYYMIDYG 158 (288)
T ss_pred chhhHHHHHHHHHHHHHHhcCCceeeeeeeccccHHHHHHHHHhc
Confidence 6788899999999776 8999999999999999999999874
No 147
>COG0627 Predicted esterase [General function prediction only]
Probab=95.06 E-value=0.022 Score=52.68 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=31.6
Q ss_pred HHHHHHHHHh-hhCCC----cEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 177 LSNQLLFVLS-YFGLH----SVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 177 lA~dL~~lLd-~LgI~----~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+..+|.++++ ++... +--++||||||+=|+.+|++||+|.+.
T Consensus 133 l~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~ 179 (316)
T COG0627 133 LTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKS 179 (316)
T ss_pred HHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhce
Confidence 4556774554 44422 466779999999999999999999864
No 148
>KOG2281|consensus
Probab=94.98 E-value=0.03 Score=56.89 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=57.0
Q ss_pred hhc-CceEEEEcCCCCCCCCCCCC----CCCCCCCHHHHHHHHHHHHhhhCC---CcEEEEEEcHHHHHHHHHHHhCcCc
Q psy5044 144 LLE-NFSVYHVNAPGQEEGAQPLA----DDYIYPTMDELSNQLLFVLSYFGL---HSVIGLGVGAGGNILARFALSHLWY 215 (219)
Q Consensus 144 L~~-~~rvIavDlpGHG~s~s~~~----~~~~~~Smd~lA~dL~~lLd~LgI---~~~~lvG~SmGG~IAl~fA~~~P~R 215 (219)
|++ .+.|+.+|-||-......+- ....+..++|.++-+.-+.++.|+ +++.+=|||+|||+++...++||+-
T Consensus 672 LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~I 751 (867)
T KOG2281|consen 672 LASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNI 751 (867)
T ss_pred hhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcce
Confidence 544 89999999999754322111 111235789999999999988864 7899999999999999999999986
Q ss_pred cc
Q psy5044 216 CS 217 (219)
Q Consensus 216 V~ 217 (219)
.+
T Consensus 752 fr 753 (867)
T KOG2281|consen 752 FR 753 (867)
T ss_pred ee
Confidence 65
No 149
>KOG2183|consensus
Probab=94.36 E-value=0.082 Score=51.33 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=65.7
Q ss_pred cccCCCCCccch--hhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCC-------CCCCCHHHHHHHHHHHHhhhCC-
Q psy5044 121 CYDTDHTNISNF--QAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADD-------YIYPTMDELSNQLLFVLSYFGL- 190 (219)
Q Consensus 121 ~~~~~~~~~~~f--~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~-------~~~~Smd~lA~dL~~lLd~LgI- 190 (219)
.+.+|-+++..| ++=|-|+....+..- +|-+.+|=.|+|. |+... ..|.|-++--+|-+++|.+|.-
T Consensus 85 fYtGNEGdie~Fa~ntGFm~D~Ap~~~Al--lVFaEHRyYGeS~-PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~ 161 (492)
T KOG2183|consen 85 FYTGNEGDIEWFANNTGFMWDLAPELKAL--LVFAEHRYYGESL-PFGSQSYKDARHLGYLTSEQALADFAELLTFLKRD 161 (492)
T ss_pred EEeCCcccHHHHHhccchHHhhhHhhCce--EEEeehhccccCC-CCcchhccChhhhccccHHHHHHHHHHHHHHHhhc
Confidence 345555666666 455778777766554 4888999888765 33321 1245655555666666666532
Q ss_pred -----CcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 191 -----HSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 191 -----~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
.+++..|-|+|||+|.+|=++||.-|.+
T Consensus 162 ~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~G 194 (492)
T KOG2183|consen 162 LSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLG 194 (492)
T ss_pred cccccCcEEEecCchhhHHHHHHHhcChhhhhh
Confidence 4699999999999999999999987764
No 150
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=94.29 E-value=0.66 Score=42.62 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=34.3
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh---CCCcEEEEEEcHHHHHHHHHHHh
Q psy5044 150 VYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYF---GLHSVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 150 vIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~L---gI~~~~lvG~SmGG~IAl~fA~~ 211 (219)
||++|.--|=+-++..... +||+...++|..+++.+ |++++-++--|+-|.||.+.|.+
T Consensus 60 ViRyDsl~HvGlSsG~I~e---ftms~g~~sL~~V~dwl~~~g~~~~GLIAaSLSaRIAy~Va~~ 121 (294)
T PF02273_consen 60 VIRYDSLNHVGLSSGDINE---FTMSIGKASLLTVIDWLATRGIRRIGLIAASLSARIAYEVAAD 121 (294)
T ss_dssp EEEE---B----------------HHHHHHHHHHHHHHHHHTT---EEEEEETTHHHHHHHHTTT
T ss_pred EEeccccccccCCCCChhh---cchHHhHHHHHHHHHHHHhcCCCcchhhhhhhhHHHHHHHhhc
Confidence 3999988774323322222 39999988888776655 89999999999999999998863
No 151
>KOG4627|consensus
Probab=94.21 E-value=0.29 Score=44.06 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhhhC-CCcEEEEEEcHHHHHHHHHHHh-CcCccc
Q psy5044 173 TMDELSNQLLFVLSYFG-LHSVIGLGVGAGGNILARFALS-HLWYCS 217 (219)
Q Consensus 173 Smd~lA~dL~~lLd~Lg-I~~~~lvG~SmGG~IAl~fA~~-~P~RV~ 217 (219)
||.+...-+.-+|+... .+.+.+.|||.||.+|.+...| +..||.
T Consensus 117 t~~~~~~gv~filk~~~n~k~l~~gGHSaGAHLa~qav~R~r~prI~ 163 (270)
T KOG4627|consen 117 TMTQFTHGVNFILKYTENTKVLTFGGHSAGAHLAAQAVMRQRSPRIW 163 (270)
T ss_pred HHHHHHHHHHHHHHhcccceeEEEcccchHHHHHHHHHHHhcCchHH
Confidence 56666666666677664 5678899999999998877664 455554
No 152
>PRK04940 hypothetical protein; Provisional
Probab=94.04 E-value=0.096 Score=45.06 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=21.3
Q ss_pred CcEEEEEEcHHHHHHHHHHHhCc
Q psy5044 191 HSVIGLGVGAGGNILARFALSHL 213 (219)
Q Consensus 191 ~~~~lvG~SmGG~IAl~fA~~~P 213 (219)
+++.+||.||||+-|.++|.+|.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g 82 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG 82 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC
Confidence 67999999999999999999884
No 153
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=93.96 E-value=0.079 Score=49.66 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhh---CCCcEEEEEEcHHHHHHHHHHHhCcC
Q psy5044 175 DELSNQLLFVLSYF---GLHSVIGLGVGAGGNILARFALSHLW 214 (219)
Q Consensus 175 d~lA~dL~~lLd~L---gI~~~~lvG~SmGG~IAl~fA~~~P~ 214 (219)
++++..|.++++.. .-++++++||||||.+++.|-...+.
T Consensus 100 ~~~~~~lk~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~ 142 (389)
T PF02450_consen 100 DEYFTKLKQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQ 142 (389)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccc
Confidence 45555555555443 35799999999999999999888754
No 154
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=93.94 E-value=0.16 Score=47.92 Aligned_cols=75 Identities=20% Similarity=0.146 Sum_probs=50.6
Q ss_pred hhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHH----------HHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCc
Q psy5044 144 LLENFSVYHVNAPGQEEGAQPLADDYIYPTMDEL----------SNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHL 213 (219)
Q Consensus 144 L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~l----------A~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P 213 (219)
|.+.+..+.+-.|=||.-++.........++.|+ +.-|..++++-|..++-+.|.||||..|.-.|..+|
T Consensus 118 l~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~~G~~~~g~~G~SmGG~~A~laa~~~p 197 (348)
T PF09752_consen 118 LKEGIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMGRATILESRALLHWLEREGYGPLGLTGISMGGHMAALAASNWP 197 (348)
T ss_pred HHcCcceEEEecccccccChhHhhcccccchhHHHHHHhHHHHHHHHHHHHHHhcCCCceEEEEechhHhhHHhhhhcCC
Confidence 4445566777777776543322212122344444 244566777779999999999999999999999999
Q ss_pred CcccC
Q psy5044 214 WYCSL 218 (219)
Q Consensus 214 ~RV~~ 218 (219)
..+..
T Consensus 198 ~pv~~ 202 (348)
T PF09752_consen 198 RPVAL 202 (348)
T ss_pred CceeE
Confidence 87653
No 155
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=93.82 E-value=0.059 Score=52.11 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=51.9
Q ss_pred hhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCc-ccC
Q psy5044 144 LLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWY-CSL 218 (219)
Q Consensus 144 L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~R-V~~ 218 (219)
+.+...|..+|-++=.++......+ .| =.+.+.+.+..+.+..|.++++++|+++||+++...++.+|.+ |++
T Consensus 136 ~~~g~~vfvIsw~nPd~~~~~~~~e-dY-i~e~l~~aid~v~~itg~~~InliGyCvGGtl~~~ala~~~~k~I~S 209 (445)
T COG3243 136 LEQGLDVFVISWRNPDASLAAKNLE-DY-ILEGLSEAIDTVKDITGQKDINLIGYCVGGTLLAAALALMAAKRIKS 209 (445)
T ss_pred HHcCCceEEEeccCchHhhhhccHH-HH-HHHHHHHHHHHHHHHhCccccceeeEecchHHHHHHHHhhhhccccc
Confidence 5666777888876553332211100 11 1244557788888999999999999999999999999999888 664
No 156
>KOG3975|consensus
Probab=93.67 E-value=0.37 Score=44.29 Aligned_cols=90 Identities=11% Similarity=0.185 Sum_probs=63.7
Q ss_pred ccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCC------CCCCCCCCHHHHHHHHHHHHhhhCC--C
Q psy5044 120 ICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPL------ADDYIYPTMDELSNQLLFVLSYFGL--H 191 (219)
Q Consensus 120 ~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~------~~~~~~~Smd~lA~dL~~lLd~LgI--~ 191 (219)
+||=+||+|. -|++=|--.-...|-.+++++.+-.-||..-..+. ... .-+|+++..+-=.++++..-- .
T Consensus 33 ~~IpGNPG~~-gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~-eifsL~~QV~HKlaFik~~~Pk~~ 110 (301)
T KOG3975|consen 33 VWIPGNPGLL-GFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNE-EIFSLQDQVDHKLAFIKEYVPKDR 110 (301)
T ss_pred EEecCCCCch-hHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccc-cccchhhHHHHHHHHHHHhCCCCC
Confidence 3455677764 46666665556667777889999999996432111 111 234899999988888877743 5
Q ss_pred cEEEEEEcHHHHHHHHHHHh
Q psy5044 192 SVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 192 ~~~lvG~SmGG~IAl~fA~~ 211 (219)
+.+++|||.|+|+.++.-..
T Consensus 111 ki~iiGHSiGaYm~Lqil~~ 130 (301)
T KOG3975|consen 111 KIYIIGHSIGAYMVLQILPS 130 (301)
T ss_pred EEEEEecchhHHHHHHHhhh
Confidence 79999999999999998763
No 157
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=93.55 E-value=0.39 Score=45.73 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=41.8
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHH
Q psy5044 149 SVYHVNAPGQEEGAQPLADDYIYP-TMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~~~~~~~~-Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~ 210 (219)
.++.+|..--. + ...++.|| =+-++++--..+++..|-+.++++|-|+||..++.|..
T Consensus 156 SILvLDYsLt~--~--~~~~~~yPtQL~qlv~~Y~~Lv~~~G~~nI~LmGDSAGGnL~Ls~Lq 214 (374)
T PF10340_consen 156 SILVLDYSLTS--S--DEHGHKYPTQLRQLVATYDYLVESEGNKNIILMGDSAGGNLALSFLQ 214 (374)
T ss_pred eEEEEeccccc--c--ccCCCcCchHHHHHHHHHHHHHhccCCCeEEEEecCccHHHHHHHHH
Confidence 56777765331 0 01122332 47888888888888889999999999999999998865
No 158
>PLN02454 triacylglycerol lipase
Probab=93.27 E-value=0.16 Score=48.96 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhhCCCc--EEEEEEcHHHHHHHHHHHh
Q psy5044 175 DELSNQLLFVLSYFGLHS--VIGLGVGAGGNILARFALS 211 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI~~--~~lvG~SmGG~IAl~fA~~ 211 (219)
+++-..|.++++...-++ +++.||||||.+|+..|..
T Consensus 210 ~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 210 SQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHH
Confidence 445556666666654444 9999999999999999864
No 159
>PLN02571 triacylglycerol lipase
Probab=93.24 E-value=0.14 Score=49.18 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhhCCC--cEEEEEEcHHHHHHHHHHHh
Q psy5044 175 DELSNQLLFVLSYFGLH--SVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI~--~~~lvG~SmGG~IAl~fA~~ 211 (219)
+++.++|.++++...=+ ++++.||||||.+|...|..
T Consensus 208 ~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 208 DQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 66777888888776543 58999999999999998875
No 160
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=93.21 E-value=0.13 Score=45.12 Aligned_cols=39 Identities=15% Similarity=0.014 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcC
Q psy5044 175 DELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLW 214 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~ 214 (219)
..-++-+..+++..+- ++++.|||.||++|+..|+..++
T Consensus 69 ~~A~~yl~~~~~~~~~-~i~v~GHSkGGnLA~yaa~~~~~ 107 (224)
T PF11187_consen 69 KSALAYLKKIAKKYPG-KIYVTGHSKGGNLAQYAAANCDD 107 (224)
T ss_pred HHHHHHHHHHHHhCCC-CEEEEEechhhHHHHHHHHHccH
Confidence 3334455666666554 59999999999999999998543
No 161
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=93.18 E-value=0.4 Score=43.53 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=53.0
Q ss_pred CCccchhhhhchhhhhhhhcCceEEEEcC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh-------CCCcEEEEEE
Q psy5044 127 TNISNFQAFFNFSDMRSLLENFSVYHVNA-PGQEEGAQPLADDYIYPTMDELSNQLLFVLSYF-------GLHSVIGLGV 198 (219)
Q Consensus 127 ~~~~~f~~~~nw~~~~~L~~~~rvIavDl-pGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~L-------gI~~~~lvG~ 198 (219)
.+.....+-+.|.+.+ -++-||. .|-|-|....+..+ ..+.++.|+++.++|..+ .=.+.+++|-
T Consensus 71 ~~~~l~~n~~sW~~~a------n~l~iD~PvGtGfS~~~~~~~~-~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GE 143 (415)
T PF00450_consen 71 GPYTLEDNPYSWNKFA------NLLFIDQPVGTGFSYGNDPSDY-VWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGE 143 (415)
T ss_dssp STSEEEE-TT-GGGTS------EEEEE--STTSTT-EESSGGGG-S-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEE
T ss_pred cccccccccccccccc------ceEEEeecCceEEeeccccccc-cchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEcc
Confidence 3456677777887765 4699994 48887776554432 348999999999999877 4458999999
Q ss_pred cHHHHHHHHHHH
Q psy5044 199 GAGGNILARFAL 210 (219)
Q Consensus 199 SmGG~IAl~fA~ 210 (219)
|+||.-+-.+|.
T Consensus 144 SYgG~yvP~~a~ 155 (415)
T PF00450_consen 144 SYGGHYVPALAS 155 (415)
T ss_dssp TTHHHHHHHHHH
T ss_pred ccccccchhhHH
Confidence 999987666654
No 162
>PLN02633 palmitoyl protein thioesterase family protein
Probab=93.17 E-value=0.26 Score=45.92 Aligned_cols=41 Identities=5% Similarity=-0.096 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHhh---hCCCcEEEEEEcHHHHHHHHHHHhCcC
Q psy5044 173 TMDELSNQLLFVLSY---FGLHSVIGLGVGAGGNILARFALSHLW 214 (219)
Q Consensus 173 Smd~lA~dL~~lLd~---LgI~~~~lvG~SmGG~IAl~fA~~~P~ 214 (219)
.+.+.++.+-+-|.. |. +-++++|+|-||.++-+++.++|+
T Consensus 74 ~~~~Qve~vce~l~~~~~l~-~G~naIGfSQGGlflRa~ierc~~ 117 (314)
T PLN02633 74 PLTQQAEIACEKVKQMKELS-QGYNIVGRSQGNLVARGLIEFCDG 117 (314)
T ss_pred CHHHHHHHHHHHHhhchhhh-CcEEEEEEccchHHHHHHHHHCCC
Confidence 455555554444433 33 459999999999999999999997
No 163
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=92.97 E-value=0.12 Score=45.05 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=43.2
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh----CCCcEEEEEEcHHHHHHHHHHHhCcCccc
Q psy5044 148 FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYF----GLHSVIGLGVGAGGNILARFALSHLWYCS 217 (219)
Q Consensus 148 ~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~L----gI~~~~lvG~SmGG~IAl~fA~~~P~RV~ 217 (219)
+-|+.+|.+=.=.+. -|-++.|.|+.+++++. +.++++++|+|.||-|.-...-+-|..++
T Consensus 30 ~~VvGvdsl~Yfw~~---------rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGADvlP~~~nrLp~~~r 94 (192)
T PF06057_consen 30 VPVVGVDSLRYFWSE---------RTPEQTAADLARIIRHYRARWGRKRVVLIGYSFGADVLPFIYNRLPAALR 94 (192)
T ss_pred CeEEEechHHHHhhh---------CCHHHHHHHHHHHHHHHHHHhCCceEEEEeecCCchhHHHHHhhCCHHHH
Confidence 345888866542221 15577777777776654 88999999999999998877777776544
No 164
>PLN00413 triacylglycerol lipase
Probab=92.42 E-value=0.23 Score=48.65 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHH
Q psy5044 175 DELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~ 210 (219)
.++.+.|.++++...-.++++.|||+||.+|..+|.
T Consensus 268 y~i~~~Lk~ll~~~p~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 268 YTILRHLKEIFDQNPTSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecCHHHHHHHHHHH
Confidence 456778888888887778999999999999999885
No 165
>KOG2369|consensus
Probab=92.31 E-value=0.17 Score=49.44 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCc
Q psy5044 173 TMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWY 215 (219)
Q Consensus 173 Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~R 215 (219)
++..|+..|......-|-+++++++||||+.+.+.|-..+++.
T Consensus 164 yl~kLK~~iE~~~~~~G~kkVvlisHSMG~l~~lyFl~w~~~~ 206 (473)
T KOG2369|consen 164 YLSKLKKKIETMYKLNGGKKVVLISHSMGGLYVLYFLKWVEAE 206 (473)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEecCCccHHHHHHHhccccc
Confidence 5677777777777777889999999999999999999888763
No 166
>PLN02408 phospholipase A1
Probab=92.16 E-value=0.25 Score=46.88 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhhCCC--cEEEEEEcHHHHHHHHHHHh
Q psy5044 175 DELSNQLLFVLSYFGLH--SVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI~--~~~lvG~SmGG~IAl~fA~~ 211 (219)
+++.+.|.++++...-+ ++++.|||+||.+|...|..
T Consensus 182 ~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~d 220 (365)
T PLN02408 182 EMVREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYD 220 (365)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHH
Confidence 45567778888776644 58999999999999988874
No 167
>PLN02162 triacylglycerol lipase
Probab=91.73 E-value=0.31 Score=47.71 Aligned_cols=36 Identities=22% Similarity=0.105 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHH
Q psy5044 175 DELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~ 210 (219)
.++-+.|.+++.+..-.++++.|||+||.+|..+|.
T Consensus 262 ~~I~~~L~~lL~k~p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 262 YTIRQMLRDKLARNKNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred HHHHHHHHHHHHhCCCceEEEEecChHHHHHHHHHH
Confidence 345566777777766678999999999999998865
No 168
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=91.45 E-value=0.49 Score=42.62 Aligned_cols=70 Identities=16% Similarity=0.106 Sum_probs=44.0
Q ss_pred hhhhhh-hhcCceEEEEcCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHhhhCC---CcEEEEEEcHHHHHHHHHHH
Q psy5044 138 FSDMRS-LLENFSVYHVNAPGQEEGAQPLADDYI-YPTMDELSNQLLFVLSYFGL---HSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 138 w~~~~~-L~~~~rvIavDlpGHG~s~s~~~~~~~-~~Smd~lA~dL~~lLd~LgI---~~~~lvG~SmGG~IAl~fA~ 210 (219)
-..++. |++.|-|+++|..|-|. +...+.. -.++=|.++...++....|+ .++.+.|+|-||.-+++.|.
T Consensus 16 ~~~l~~~L~~GyaVv~pDY~Glg~---~y~~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~ 90 (290)
T PF03583_consen 16 APFLAAWLARGYAVVAPDYEGLGT---PYLNGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAE 90 (290)
T ss_pred HHHHHHHHHCCCEEEecCCCCCCC---cccCcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHH
Confidence 334444 99999999999999974 3322210 01333344444444444455 47999999999988766554
No 169
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=91.44 E-value=2.2 Score=41.13 Aligned_cols=168 Identities=15% Similarity=0.180 Sum_probs=83.2
Q ss_pred cEEEEEe--c-CCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccceE--EEecCCCCCCCCCCcccccccc---hhh
Q psy5044 37 SILVAVA--G-NRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSV--YHVNAPGQEEGAQPLADDVTQH---PLA 108 (219)
Q Consensus 37 ~~~v~~~--G-~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~~v--~hv~~pG~~~~a~~l~~~~~~~---~~~ 108 (219)
.|-+.++ + +.-+..++.+.|+|.|..+++..| .+..++++|.| +||+=.|-.-- |.....+..- -+-
T Consensus 21 KLEyri~ydd~Ke~kaIvfiI~GfG~dan~~~~d~----~r~~iA~~fnvv~I~V~YHCf~~R-~q~~A~~~~~~~D~~i 95 (403)
T PF11144_consen 21 KLEYRISYDDEKEIKAIVFIIPGFGADANSNYLDF----MREYIAKKFNVVVISVNYHCFCNR-PQYGAKFYFDDIDKEI 95 (403)
T ss_pred eeeEEeecCCCCCceEEEEEeCCcCCCcchHHHHH----HHHHHHHhCCEEEEEeeeeheeec-cccCchhcCCHHHHHH
Confidence 3555553 2 455567888999999998877744 24446777655 45555553222 2222222111 223
Q ss_pred HHHHHHhcCccccccCCC-CCccchhhhhc----hhhhhh-hhcCceEEEEcCCCCCCCCCCCCCCCCCCCHH-----HH
Q psy5044 109 LLMIIRHYGMDICYDTDH-TNISNFQAFFN----FSDMRS-LLENFSVYHVNAPGQEEGAQPLADDYIYPTMD-----EL 177 (219)
Q Consensus 109 ~~~v~~~~~~~~~~~~~~-~~~~~f~~~~n----w~~~~~-L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd-----~l 177 (219)
+-.+|...++. +...+- .|.+.+..+.| +...+. |.+++++-. +.+-.|+.-.|-.+- |.
T Consensus 96 Lk~~L~~i~i~-~~~i~~~~~~~~~~~~L~~~I~~lK~~~~L~~d~kl~l--------s~tl~P~n~EYQN~GIMqAiD~ 166 (403)
T PF11144_consen 96 LKKSLEKINID-SESINTYDNAEQIYELLNQNITELKEQGILPQDYKLNL--------SCTLIPPNGEYQNFGIMQAIDI 166 (403)
T ss_pred HHHHHHHcCcc-ccccccchhHHHHHHHHHHHHHHHHhcCCCCCCcEEeE--------EEEecCCchhhhhhHHHHHHHH
Confidence 34556667761 011111 12222222222 222222 555554322 111111110121111 11
Q ss_pred HHHHHHHHhhh---CC-CcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 178 SNQLLFVLSYF---GL-HSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 178 A~dL~~lLd~L---gI-~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
-..|..+...+ +- -+++.+|+|.|||+|...|.-.|..+.+
T Consensus 167 INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~ 211 (403)
T PF11144_consen 167 INALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDG 211 (403)
T ss_pred HHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeE
Confidence 12233333333 22 2799999999999999999999988764
No 170
>KOG3724|consensus
Probab=91.43 E-value=0.13 Score=53.34 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=37.2
Q ss_pred hhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh----hC---------CCcEEEEEEcHHHHHHHHHHH
Q psy5044 144 LLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSY----FG---------LHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 144 L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~----Lg---------I~~~~lvG~SmGG~IAl~fA~ 210 (219)
...+++..++|.=+- -+.. .| -++.+.|+-+.+.+.. .. -+.++++||||||+||.+.+.
T Consensus 129 ~~~~~DFFaVDFnEe---~tAm-~G---~~l~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~t 201 (973)
T KOG3724|consen 129 NPFSFDFFAVDFNEE---FTAM-HG---HILLDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLT 201 (973)
T ss_pred CccccceEEEcccch---hhhh-cc---HhHHHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHh
Confidence 444556678887643 1111 12 1677777765554432 21 234999999999999988764
No 171
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=91.42 E-value=1.2 Score=44.52 Aligned_cols=71 Identities=13% Similarity=-0.031 Sum_probs=47.1
Q ss_pred hhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHH--HHHHHHHHhhhC--CCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 144 LLENFSVYHVNAPGQEEGAQPLADDYIYPTMDEL--SNQLLFVLSYFG--LHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 144 L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~l--A~dL~~lLd~Lg--I~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
.++.|-||..|.||-|.|.-.+.. +.+ .+. +.|+.++|-+.- =.+|--.|.|++|...++.|+..|--+|+
T Consensus 77 aa~GYavV~qDvRG~~~SeG~~~~---~~~-~E~~Dg~D~I~Wia~QpWsNG~Vgm~G~SY~g~tq~~~Aa~~pPaLka 151 (563)
T COG2936 77 AAQGYAVVNQDVRGRGGSEGVFDP---ESS-REAEDGYDTIEWLAKQPWSNGNVGMLGLSYLGFTQLAAAALQPPALKA 151 (563)
T ss_pred ecCceEEEEecccccccCCcccce---ecc-ccccchhHHHHHHHhCCccCCeeeeecccHHHHHHHHHHhcCCchhee
Confidence 345677799999999866432221 112 111 224444554443 26788999999999999999988876664
No 172
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=91.40 E-value=0.8 Score=39.97 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHH
Q psy5044 175 DELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~ 210 (219)
+++-..+.++-..+.-.+.++-|+||||.++.-.|.
T Consensus 73 ~~~~~~~aql~~~l~~gpLi~GGkSmGGR~aSmvad 108 (213)
T COG3571 73 PEYIVAIAQLRAGLAEGPLIIGGKSMGGRVASMVAD 108 (213)
T ss_pred HHHHHHHHHHHhcccCCceeeccccccchHHHHHHH
Confidence 556666667666666678999999999999887765
No 173
>PLN02310 triacylglycerol lipase
Probab=90.33 E-value=0.45 Score=45.74 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhhC----CCcEEEEEEcHHHHHHHHHHHh
Q psy5044 175 DELSNQLLFVLSYFG----LHSVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 175 d~lA~dL~~lLd~Lg----I~~~~lvG~SmGG~IAl~fA~~ 211 (219)
+++-+.|.++++... --++++.|||+||.+|...|..
T Consensus 189 ~qVl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~d 229 (405)
T PLN02310 189 EQVMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAYE 229 (405)
T ss_pred HHHHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHHH
Confidence 456667777777653 2368999999999999988853
No 174
>PLN02934 triacylglycerol lipase
Probab=90.30 E-value=0.44 Score=47.13 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHH
Q psy5044 175 DELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~ 210 (219)
+++-..|.+++++..-.++++.|||+||.+|..+|.
T Consensus 305 ~~v~~~lk~ll~~~p~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 305 YAVRSKLKSLLKEHKNAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred HHHHHHHHHHHHHCCCCeEEEeccccHHHHHHHHHH
Confidence 567777888888877789999999999999999875
No 175
>PLN02753 triacylglycerol lipase
Probab=90.12 E-value=0.49 Score=46.93 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhhCC-----CcEEEEEEcHHHHHHHHHHHh
Q psy5044 175 DELSNQLLFVLSYFGL-----HSVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI-----~~~~lvG~SmGG~IAl~fA~~ 211 (219)
+++-+.|.++++...- -++++.|||+||.+|...|..
T Consensus 291 eQVl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~D 332 (531)
T PLN02753 291 EQILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAYD 332 (531)
T ss_pred HHHHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHHH
Confidence 4455667777776643 479999999999999998863
No 176
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=90.02 E-value=0.32 Score=45.09 Aligned_cols=41 Identities=15% Similarity=0.305 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHhhh--------CCCcEEEEEEcHHHHHHHHHHHhCc
Q psy5044 173 TMDELSNQLLFVLSYF--------GLHSVIGLGVGAGGNILARFALSHL 213 (219)
Q Consensus 173 Smd~lA~dL~~lLd~L--------gI~~~~lvG~SmGG~IAl~fA~~~P 213 (219)
|+++=|++|.++++.| +.++++++|||-|..-.++|..+..
T Consensus 82 SL~~D~~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~ 130 (303)
T PF08538_consen 82 SLDRDVEEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPN 130 (303)
T ss_dssp -HHHHHHHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHHH-T
T ss_pred hhhhHHHHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHhccC
Confidence 6666677777666644 4679999999999999999998763
No 177
>PLN02324 triacylglycerol lipase
Probab=89.88 E-value=0.53 Score=45.43 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhhCCC--cEEEEEEcHHHHHHHHHHHh
Q psy5044 175 DELSNQLLFVLSYFGLH--SVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI~--~~~lvG~SmGG~IAl~fA~~ 211 (219)
+++.+.|.++++...=+ ++++.|||+||.+|...|..
T Consensus 197 eqVl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~d 235 (415)
T PLN02324 197 EQVQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAAD 235 (415)
T ss_pred HHHHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHHH
Confidence 44566677788766532 68999999999999998864
No 178
>PLN02802 triacylglycerol lipase
Probab=88.74 E-value=0.69 Score=45.70 Aligned_cols=36 Identities=11% Similarity=0.072 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhhCC--CcEEEEEEcHHHHHHHHHHHh
Q psy5044 176 ELSNQLLFVLSYFGL--HSVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 176 ~lA~dL~~lLd~LgI--~~~~lvG~SmGG~IAl~fA~~ 211 (219)
++-+.|.++++...= -++++.|||+||.+|...|..
T Consensus 313 qVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~d 350 (509)
T PLN02802 313 SVVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADE 350 (509)
T ss_pred HHHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHH
Confidence 455566777776543 268999999999999988764
No 179
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=88.40 E-value=0.99 Score=39.15 Aligned_cols=46 Identities=15% Similarity=0.072 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 172 PTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 172 ~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
|..++-.+.|.+-+.+. =+.+++|+||+|...+++|+.+....|++
T Consensus 41 P~~~dWi~~l~~~v~a~-~~~~vlVAHSLGc~~v~h~~~~~~~~V~G 86 (181)
T COG3545 41 PVLDDWIARLEKEVNAA-EGPVVLVAHSLGCATVAHWAEHIQRQVAG 86 (181)
T ss_pred CCHHHHHHHHHHHHhcc-CCCeEEEEecccHHHHHHHHHhhhhccce
Confidence 35566655555555555 23499999999999999999877666654
No 180
>PLN03037 lipase class 3 family protein; Provisional
Probab=88.37 E-value=0.76 Score=45.56 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhhC----CCcEEEEEEcHHHHHHHHHHHh
Q psy5044 175 DELSNQLLFVLSYFG----LHSVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 175 d~lA~dL~~lLd~Lg----I~~~~lvG~SmGG~IAl~fA~~ 211 (219)
+++.++|.++++... --++++.|||+||.+|+..|..
T Consensus 298 eQVl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~D 338 (525)
T PLN03037 298 EQVMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYE 338 (525)
T ss_pred HHHHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHH
Confidence 455677788887663 1368999999999999988853
No 181
>PLN02719 triacylglycerol lipase
Probab=88.15 E-value=0.82 Score=45.29 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhhCC-----CcEEEEEEcHHHHHHHHHHHh
Q psy5044 175 DELSNQLLFVLSYFGL-----HSVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI-----~~~~lvG~SmGG~IAl~fA~~ 211 (219)
+++-+.|.++++...- -++++.|||+||.+|...|..
T Consensus 277 eQVl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~D 318 (518)
T PLN02719 277 EQVLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAYD 318 (518)
T ss_pred HHHHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHHH
Confidence 3455566666666532 379999999999999998853
No 182
>COG4099 Predicted peptidase [General function prediction only]
Probab=87.77 E-value=0.66 Score=43.79 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=35.9
Q ss_pred HHHHHHHHH-HHHhhhCCC--cEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 174 MDELSNQLL-FVLSYFGLH--SVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 174 md~lA~dL~-~lLd~LgI~--~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
+....+-+. .+.++.+|+ |..+.|.|+||+-++.++.+||+.+++
T Consensus 249 l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAa 296 (387)
T COG4099 249 LIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAA 296 (387)
T ss_pred HHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhhe
Confidence 344445555 556788885 689999999999999999999998875
No 183
>PLN02761 lipase class 3 family protein
Probab=87.66 E-value=0.89 Score=45.13 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhhC------CCcEEEEEEcHHHHHHHHHHH
Q psy5044 175 DELSNQLLFVLSYFG------LHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 175 d~lA~dL~~lLd~Lg------I~~~~lvG~SmGG~IAl~fA~ 210 (219)
+++-+.|.++++... --++++.|||+||.+|.-.|.
T Consensus 272 ~qVl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAtLaA~ 313 (527)
T PLN02761 272 EQVLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLALVSAY 313 (527)
T ss_pred HHHHHHHHHHHHhcccccCCCCceEEEeccchHHHHHHHHHH
Confidence 345566777777662 136999999999999998875
No 184
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=87.40 E-value=1.4 Score=38.73 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHhhhCC-CcEEEEEEcHHHHHHHHHHHhC
Q psy5044 173 TMDELSNQLLFVLSYFGL-HSVIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 173 Smd~lA~dL~~lLd~LgI-~~~~lvG~SmGG~IAl~fA~~~ 212 (219)
...|..+.....|++.+= ++++++|||-|+++++++..++
T Consensus 76 ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 76 AYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred hHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHHH
Confidence 457888888888988865 5899999999999999998765
No 185
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=87.03 E-value=0.89 Score=46.01 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhh----CCCcEEEEEEcHHHHHHHHHHH
Q psy5044 175 DELSNQLLFVLSYF----GLHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 175 d~lA~dL~~lLd~L----gI~~~~lvG~SmGG~IAl~fA~ 210 (219)
+++-..|.++++.. +=++++++||||||.+++.|-.
T Consensus 193 d~YF~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyFL~ 232 (642)
T PLN02517 193 DQTLSRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHFMK 232 (642)
T ss_pred hHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHHHH
Confidence 45545555655533 3579999999999999999875
No 186
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=86.95 E-value=0.98 Score=41.20 Aligned_cols=44 Identities=16% Similarity=0.079 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhh-h--CCCcEEEEEEcHHHHHHHHHHHhCcCccc
Q psy5044 174 MDELSNQLLFVLSY-F--GLHSVIGLGVGAGGNILARFALSHLWYCS 217 (219)
Q Consensus 174 md~lA~dL~~lLd~-L--gI~~~~lvG~SmGG~IAl~fA~~~P~RV~ 217 (219)
.+-+-++|.-++++ . +-++-.++|||+||.+.+...+++|+.+.
T Consensus 117 ~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~ 163 (264)
T COG2819 117 REFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFG 163 (264)
T ss_pred HHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhc
Confidence 45566667777776 3 44567889999999999999999999875
No 187
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=85.70 E-value=0.43 Score=44.22 Aligned_cols=45 Identities=18% Similarity=0.027 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHhhh-CC----CcEEEEEEcHHHHHHHHHHHhCcCccc
Q psy5044 173 TMDELSNQLLFVLSYF-GL----HSVIGLGVGAGGNILARFALSHLWYCS 217 (219)
Q Consensus 173 Smd~lA~dL~~lLd~L-gI----~~~~lvG~SmGG~IAl~fA~~~P~RV~ 217 (219)
....++.+|.=.+++- .+ +.-+++|-|+||.+++..|++||+++.
T Consensus 154 ~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG 203 (299)
T COG2382 154 YWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFG 203 (299)
T ss_pred HHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhc
Confidence 3556666665555432 22 345789999999999999999999874
No 188
>KOG4569|consensus
Probab=85.15 E-value=1.5 Score=40.51 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHH
Q psy5044 175 DELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~ 210 (219)
+.+.+++.++++...=-++.+-|||+||.+|..+|.
T Consensus 155 ~~~~~~~~~L~~~~~~~~i~vTGHSLGgAlA~laa~ 190 (336)
T KOG4569|consen 155 SGLDAELRRLIELYPNYSIWVTGHSLGGALASLAAL 190 (336)
T ss_pred HHHHHHHHHHHHhcCCcEEEEecCChHHHHHHHHHH
Confidence 578888899999888678999999999999998876
No 189
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=84.96 E-value=1.2 Score=40.78 Aligned_cols=33 Identities=21% Similarity=0.147 Sum_probs=28.4
Q ss_pred HHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhC
Q psy5044 180 QLLFVLSYFGLHSVIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 180 dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~ 212 (219)
-+.+.|++.||.--.++|.|+||.++..||..+
T Consensus 32 GvL~aLee~gi~~d~v~GtSaGAi~ga~ya~g~ 64 (306)
T cd07225 32 GVIKALEEAGIPVDMVGGTSIGAFIGALYAEER 64 (306)
T ss_pred HHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCC
Confidence 366677777999889999999999999999875
No 190
>KOG3101|consensus
Probab=84.96 E-value=0.14 Score=46.28 Aligned_cols=46 Identities=17% Similarity=0.074 Sum_probs=34.9
Q ss_pred CHHH-HHHHHHHHHh----hhCCCcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 173 TMDE-LSNQLLFVLS----YFGLHSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 173 Smd~-lA~dL~~lLd----~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
.|-+ ....|.++++ .+...++-+.||||||+=|+-.+++.|++-++
T Consensus 118 rMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykS 168 (283)
T KOG3101|consen 118 RMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKS 168 (283)
T ss_pred hHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccc
Confidence 3444 4567777777 34456788999999999999999999887654
No 191
>PRK10279 hypothetical protein; Provisional
Probab=84.66 E-value=0.92 Score=41.57 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=28.5
Q ss_pred HHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCc
Q psy5044 181 LLFVLSYFGLHSVIGLGVGAGGNILARFALSHL 213 (219)
Q Consensus 181 L~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P 213 (219)
+.+.|++.||+.-.++|.|+||.++..||....
T Consensus 23 VL~aL~E~gi~~d~i~GtS~GAlvga~yA~g~~ 55 (300)
T PRK10279 23 VINALKKVGIEIDIVAGCSIGSLVGAAYACDRL 55 (300)
T ss_pred HHHHHHHcCCCcCEEEEEcHHHHHHHHHHcCCh
Confidence 566777789999999999999999999997653
No 192
>PLN02847 triacylglycerol lipase
Probab=83.87 E-value=1.9 Score=43.73 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHH--------hhhCCCcEEEEEEcHHHHHHHHHHHh
Q psy5044 173 TMDELSNQLLFVL--------SYFGLHSVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 173 Smd~lA~dL~~lL--------d~LgI~~~~lvG~SmGG~IAl~fA~~ 211 (219)
.|-.-|.+|...+ ....--+++++|||+||.+|.-++..
T Consensus 225 Gml~AArwI~~~i~~~L~kal~~~PdYkLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 225 GMVAAARWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEeccChHHHHHHHHHHH
Confidence 4666666665533 22333478999999999999988774
No 193
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=83.71 E-value=1.4 Score=39.73 Aligned_cols=34 Identities=24% Similarity=0.156 Sum_probs=30.2
Q ss_pred HHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcC
Q psy5044 181 LLFVLSYFGLHSVIGLGVGAGGNILARFALSHLW 214 (219)
Q Consensus 181 L~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~ 214 (219)
+.+.|+..|++.-.+.|-||||.++..||..+.+
T Consensus 29 Vl~aL~e~gi~~~~iaGtS~GAiva~l~A~g~~~ 62 (306)
T COG1752 29 VLKALEEAGIPIDVIAGTSAGAIVAALYAAGMDE 62 (306)
T ss_pred HHHHHHHcCCCccEEEecCHHHHHHHHHHcCCCh
Confidence 6788889999999999999999999999986543
No 194
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=83.21 E-value=1.6 Score=39.40 Aligned_cols=33 Identities=18% Similarity=0.085 Sum_probs=28.1
Q ss_pred HHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhC
Q psy5044 180 QLLFVLSYFGLHSVIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 180 dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~ 212 (219)
-+.+.|++.||.-=.++|.||||.++..||..+
T Consensus 27 GVL~aLeE~gi~~d~v~GtSaGAiiga~ya~g~ 59 (269)
T cd07227 27 GILQALEEAGIPIDAIGGTSIGSFVGGLYAREA 59 (269)
T ss_pred HHHHHHHHcCCCccEEEEECHHHHHHHHHHcCC
Confidence 356667888999889999999999999999764
No 195
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=83.16 E-value=1.6 Score=41.06 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=42.4
Q ss_pred ccchhhhhchhhhh-hhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHH
Q psy5044 129 ISNFQAFFNFSDMR-SLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILAR 207 (219)
Q Consensus 129 ~~~f~~~~nw~~~~-~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~ 207 (219)
.+.+...+.||-.. .+++ .+|-|.+ -....... .=..||+.|.+ ..+|-++++++|||+|+.+...
T Consensus 170 l~~l~~Al~~P~~Llk~~~-----~idnpw~--~a~~rA~~----aG~~LA~~L~~--~~~G~RpVtLvG~SLGarvI~~ 236 (345)
T PF05277_consen 170 LAGLMAALAWPAALLKAAS-----LIDNPWS--VAKDRAEK----AGKVLADALLS--RNQGERPVTLVGHSLGARVIYY 236 (345)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HhhChHH--HHHHHHHH----HHHHHHHHHHH--hcCCCCceEEEeecccHHHHHH
Confidence 56667777888543 2222 2577766 11111100 11445554444 2347788999999999998876
Q ss_pred HHHhCcCc
Q psy5044 208 FALSHLWY 215 (219)
Q Consensus 208 fA~~~P~R 215 (219)
....-++|
T Consensus 237 cL~~L~~~ 244 (345)
T PF05277_consen 237 CLLELAER 244 (345)
T ss_pred HHHHHHhc
Confidence 65544333
No 196
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=82.85 E-value=3 Score=41.21 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=27.2
Q ss_pred HHHHHHHHhhhCC--CcEEEEEEcHHHHHHHHHH
Q psy5044 178 SNQLLFVLSYFGL--HSVIGLGVGAGGNILARFA 209 (219)
Q Consensus 178 A~dL~~lLd~LgI--~~~~lvG~SmGG~IAl~fA 209 (219)
-+|+.+-++++|- +.++++|.|+||+.++.+-
T Consensus 165 LkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Ll 198 (491)
T COG2272 165 LKWVRDNIEAFGGDPQNVTLFGESAGAASILTLL 198 (491)
T ss_pred HHHHHHHHHHhCCCccceEEeeccchHHHHHHhh
Confidence 3688999999987 5699999999999887654
No 197
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=82.02 E-value=1.7 Score=38.02 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHH
Q psy5044 175 DELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~ 210 (219)
-...-.+.++|..+|+++..++|||+|-+.|+..|-
T Consensus 66 ~~~~~a~~~~l~~~Gi~p~~~~GhSlGE~aA~~~ag 101 (298)
T smart00827 66 FAVQVALARLWRSWGVRPDAVVGHSLGEIAAAYVAG 101 (298)
T ss_pred HHHHHHHHHHHHHcCCcccEEEecCHHHHHHHHHhC
Confidence 333344667888999999999999999999987664
No 198
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=81.62 E-value=5.4 Score=36.30 Aligned_cols=60 Identities=12% Similarity=0.050 Sum_probs=38.4
Q ss_pred eEEEEcCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh-------CCCcEEEEEEcHHHHHHHHHHH
Q psy5044 149 SVYHVNAP-GQEEGAQPLADDYIYPTMDELSNQLLFVLSYF-------GLHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 149 rvIavDlp-GHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~L-------gI~~~~lvG~SmGG~IAl~fA~ 210 (219)
.+|-+|.| |-|-|-...+.. +.+=++.|+++..+|..+ .-.++++.|-|+||.-+-.+|.
T Consensus 3 NvLfiDqPvGvGfSy~~~~~~--~~~d~~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~ 70 (319)
T PLN02213 3 NIIFLDQPVGSGFSYSKTPID--KTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQ 70 (319)
T ss_pred cEEEecCCCCCCCCCCCCCCC--ccccHHHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHH
Confidence 46899988 666675433222 223234556666666553 3467999999999986666654
No 199
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=81.43 E-value=4.9 Score=33.78 Aligned_cols=37 Identities=8% Similarity=0.011 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHh
Q psy5044 175 DELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~ 211 (219)
.++.+.|.+....--=.+++++|+|.||+|+...+..
T Consensus 65 ~~~~~~i~~~~~~CP~~kivl~GYSQGA~V~~~~~~~ 101 (179)
T PF01083_consen 65 ANLVRLIEEYAARCPNTKIVLAGYSQGAMVVGDALSG 101 (179)
T ss_dssp HHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecccccHHHHHHHHh
Confidence 4444445554444444689999999999999998876
No 200
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=79.68 E-value=2.2 Score=37.17 Aligned_cols=33 Identities=24% Similarity=0.101 Sum_probs=27.2
Q ss_pred HHHHHHHHhhhC-CCcEEEEEEcHHHHHHHHHHH
Q psy5044 178 SNQLLFVLSYFG-LHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 178 A~dL~~lLd~Lg-I~~~~lvG~SmGG~IAl~fA~ 210 (219)
.-.+.+++.+.| +++..++|||+|=+.|+..|-
T Consensus 69 ~~al~~~l~~~g~i~p~~v~GhS~GE~aAa~~aG 102 (290)
T TIGR00128 69 SAILYLKLKEQGGLKPDFAAGHSLGEYSALVAAG 102 (290)
T ss_pred HHHHHHHHHHcCCCCCCEEeecCHHHHHHHHHhC
Confidence 344667777888 999999999999999988774
No 201
>KOG2541|consensus
Probab=79.49 E-value=3.3 Score=38.35 Aligned_cols=42 Identities=10% Similarity=-0.092 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHhhhCC--CcEEEEEEcHHHHHHHHHHHhCcC
Q psy5044 173 TMDELSNQLLFVLSYFGL--HSVIGLGVGAGGNILARFALSHLW 214 (219)
Q Consensus 173 Smd~lA~dL~~lLd~LgI--~~~~lvG~SmGG~IAl~fA~~~P~ 214 (219)
-+.+.++.+-+.+....- +-.+++|.|-||.+|-+++-..|+
T Consensus 72 pl~~Qv~~~ce~v~~m~~lsqGynivg~SQGglv~Raliq~cd~ 115 (296)
T KOG2541|consen 72 PLWEQVDVACEKVKQMPELSQGYNIVGYSQGGLVARALIQFCDN 115 (296)
T ss_pred cHHHHHHHHHHHHhcchhccCceEEEEEccccHHHHHHHHhCCC
Confidence 345555544444432221 448999999999999999987754
No 202
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=79.14 E-value=2.5 Score=37.34 Aligned_cols=37 Identities=14% Similarity=-0.115 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHH
Q psy5044 174 MDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 174 md~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~ 210 (219)
+-.+.-.+.+++.+.|+++..++|||+|-+.|+..|.
T Consensus 59 i~~~q~al~~~l~~~g~~P~~v~GhS~GE~aAa~~aG 95 (295)
T TIGR03131 59 ILAAGVAAWRALLALLPRPSAVAGYSVGEYAAAVVAG 95 (295)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEeecCHHHHHHHHHhC
Confidence 3444455778889999999999999999999988764
No 203
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=78.90 E-value=4.2 Score=34.78 Aligned_cols=42 Identities=12% Similarity=-0.001 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhhCC-----CcEEEEEEcHHHHHHHHHHHhCcCcc
Q psy5044 175 DELSNQLLFVLSYFGL-----HSVIGLGVGAGGNILARFALSHLWYC 216 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI-----~~~~lvG~SmGG~IAl~fA~~~P~RV 216 (219)
++-|..|.++++.|.- .+.+++|||+|+.++-..+...+.++
T Consensus 88 ~~ga~~L~~f~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~~~~~v 134 (177)
T PF06259_consen 88 RAGAPRLARFLDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQGGLRV 134 (177)
T ss_pred HHHHHHHHHHHHHhhhhcCCCCCEEEEEecchhHHHHHHhhhCCCCc
Confidence 6667778888877753 25789999999998887766544443
No 204
>KOG2182|consensus
Probab=78.28 E-value=9.4 Score=37.95 Aligned_cols=69 Identities=12% Similarity=0.019 Sum_probs=53.6
Q ss_pred EEEEcCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHhhhCCC-------cEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 150 VYHVNAPGQEEGAQPLA---DDYIYPTMDELSNQLLFVLSYFGLH-------SVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 150 vIavDlpGHG~s~s~~~---~~~~~~Smd~lA~dL~~lLd~LgI~-------~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
|+-+.+|=.|+|.+..+ ++.+|.|.++.-+||++++++++.+ +.+..|-|+=|.++.++=.+||+.+.+
T Consensus 121 v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~G 199 (514)
T KOG2182|consen 121 VFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVG 199 (514)
T ss_pred eEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhhee
Confidence 57778888886543211 1335678888889999999888653 688999999999999999999998754
No 205
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=78.24 E-value=1.3 Score=39.78 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHH
Q psy5044 177 LSNQLLFVLSYFGLHSVIGLGVGAGGNILARFA 209 (219)
Q Consensus 177 lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA 209 (219)
+.-.+.++|+..|+++..++|||+|=+.|+..|
T Consensus 70 ~~~al~~~l~~~Gi~P~~v~GhSlGE~aA~~aa 102 (318)
T PF00698_consen 70 IQVALARLLRSWGIKPDAVIGHSLGEYAALVAA 102 (318)
T ss_dssp HHHHHHHHHHHTTHCESEEEESTTHHHHHHHHT
T ss_pred hhhhhhhhhcccccccceeeccchhhHHHHHHC
Confidence 334467888999999999999999999888665
No 206
>PLN02209 serine carboxypeptidase
Probab=76.06 E-value=10 Score=36.50 Aligned_cols=74 Identities=8% Similarity=0.060 Sum_probs=47.4
Q ss_pred ccchhhhhchhhhhhhhcCceEEEEc-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh-------CCCcEEEEEEcH
Q psy5044 129 ISNFQAFFNFSDMRSLLENFSVYHVN-APGQEEGAQPLADDYIYPTMDELSNQLLFVLSYF-------GLHSVIGLGVGA 200 (219)
Q Consensus 129 ~~~f~~~~nw~~~~~L~~~~rvIavD-lpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~L-------gI~~~~lvG~Sm 200 (219)
.+...+-+.|...+ .++-+| ..|.|-|-+..+.. +.+-++-|+++.++|..+ .-.+.+++|.|+
T Consensus 105 ~~l~~n~~sW~~~a------nllfiDqPvGtGfSy~~~~~~--~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESY 176 (437)
T PLN02209 105 PSLVSTTYSWTKTA------NIIFLDQPVGSGFSYSKTPIE--RTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSY 176 (437)
T ss_pred ccceeCCCchhhcC------cEEEecCCCCCCccCCCCCCC--ccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCc
Confidence 34556677777554 469999 77888775433322 224445566676666654 224799999999
Q ss_pred HHHHHHHHHH
Q psy5044 201 GGNILARFAL 210 (219)
Q Consensus 201 GG~IAl~fA~ 210 (219)
||.-+-.+|.
T Consensus 177 aG~yvP~~a~ 186 (437)
T PLN02209 177 SGMIVPALVH 186 (437)
T ss_pred CceehHHHHH
Confidence 9985555554
No 207
>PLN02606 palmitoyl-protein thioesterase
Probab=75.55 E-value=4.5 Score=37.71 Aligned_cols=41 Identities=2% Similarity=-0.151 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHH---hhhCCCcEEEEEEcHHHHHHHHHHHhCcC
Q psy5044 173 TMDELSNQLLFVL---SYFGLHSVIGLGVGAGGNILARFALSHLW 214 (219)
Q Consensus 173 Smd~lA~dL~~lL---d~LgI~~~~lvG~SmGG~IAl~fA~~~P~ 214 (219)
.+.+.++.+-+-| ..|. +-++++|+|-||.++-+++.++|+
T Consensus 75 ~~~~Qv~~vce~l~~~~~L~-~G~naIGfSQGglflRa~ierc~~ 118 (306)
T PLN02606 75 PLRQQASIACEKIKQMKELS-EGYNIVAESQGNLVARGLIEFCDN 118 (306)
T ss_pred CHHHHHHHHHHHHhcchhhc-CceEEEEEcchhHHHHHHHHHCCC
Confidence 4455544444444 3333 459999999999999999999988
No 208
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=71.59 E-value=10 Score=32.43 Aligned_cols=52 Identities=13% Similarity=0.026 Sum_probs=42.6
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcH----HHHHHHHHHHhC
Q psy5044 149 SVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGA----GGNILARFALSH 212 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~Sm----GG~IAl~fA~~~ 212 (219)
+|+++|.++.. .++.+.+|+.|.+++++.+ -..+++|+|. |..++-+.|.+-
T Consensus 79 ~V~~~~~~~~~-----------~~~~e~~a~al~~~i~~~~-p~lVL~~~t~~~~~grdlaprlAarL 134 (202)
T cd01714 79 RAILVSDRAFA-----------GADTLATAKALAAAIKKIG-VDLILTGKQSIDGDTGQVGPLLAELL 134 (202)
T ss_pred EEEEEeccccc-----------CCChHHHHHHHHHHHHHhC-CCEEEEcCCcccCCcCcHHHHHHHHh
Confidence 78888887652 1267999999999999988 6799999998 888999988764
No 209
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=70.14 E-value=4 Score=39.15 Aligned_cols=37 Identities=22% Similarity=-0.005 Sum_probs=29.1
Q ss_pred HHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcc
Q psy5044 180 QLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYC 216 (219)
Q Consensus 180 dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV 216 (219)
-+.+.|...|+..=+++|.|+||.||..||.+-++++
T Consensus 90 GVLkaL~E~gl~p~vIsGTSaGAivAal~as~~~eel 126 (421)
T cd07230 90 GVLKALFEANLLPRIISGSSAGSIVAAILCTHTDEEI 126 (421)
T ss_pred HHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCHHHH
Confidence 3555555668888889999999999999998766553
No 210
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=69.06 E-value=12 Score=34.20 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=26.2
Q ss_pred HHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcC
Q psy5044 182 LFVLSYFGLHSVIGLGVGAGGNILARFALSHLW 214 (219)
Q Consensus 182 ~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~ 214 (219)
.+++...+.++.+++||+.|++.++.|....+.
T Consensus 184 ~~~~~~~~~~~ivlIg~G~gA~~~~~~la~~~~ 216 (310)
T PF12048_consen 184 IAFAQQQGGKNIVLIGHGTGAGWAARYLAEKPP 216 (310)
T ss_pred HHHHHhcCCceEEEEEeChhHHHHHHHHhcCCC
Confidence 334455577779999999999999999987753
No 211
>KOG2029|consensus
Probab=68.65 E-value=6.4 Score=40.13 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHhhhCCC---cEEEEEEcHHHHHHHHHHHh
Q psy5044 173 TMDELSNQLLFVLSYFGLH---SVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 173 Smd~lA~dL~~lLd~LgI~---~~~lvG~SmGG~IAl~fA~~ 211 (219)
+++.=+..+.+.|.+.++. +++.+||||||..+-.+-+.
T Consensus 505 sl~~Rs~~lleql~~~~VG~~RPivwI~HSmGGLl~K~lLld 546 (697)
T KOG2029|consen 505 SLAARSNELLEQLQAAGVGDDRPIVWIGHSMGGLLAKKLLLD 546 (697)
T ss_pred HHHHHHHHHHHHHHHhccCCCCceEEEecccchHHHHHHHHH
Confidence 4555555566666666764 79999999999887766553
No 212
>KOG4372|consensus
Probab=67.97 E-value=2 Score=41.46 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHH
Q psy5044 175 DELSNQLLFVLSYFGLHSVIGLGVGAGGNILA 206 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl 206 (219)
..+|+++.+.+....|++.-++|||+||+++-
T Consensus 134 ~Rla~~~~e~~~~~si~kISfvghSLGGLvar 165 (405)
T KOG4372|consen 134 ERLAEEVKETLYDYSIEKISFVGHSLGGLVAR 165 (405)
T ss_pred cccHHHHhhhhhccccceeeeeeeecCCeeee
Confidence 56788888888888899999999999998753
No 213
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=67.29 E-value=12 Score=32.94 Aligned_cols=40 Identities=13% Similarity=0.053 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHhhh--CCCcEEEEEEcHHHHHHHHHHHhC
Q psy5044 173 TMDELSNQLLFVLSYF--GLHSVIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 173 Smd~lA~dL~~lLd~L--gI~~~~lvG~SmGG~IAl~fA~~~ 212 (219)
|+++=++.|.+.+++. .=++++++|+|.||.|+...+.+.
T Consensus 28 Sv~~G~~~L~~ai~~~~~~~~~vvV~GySQGA~Va~~~~~~l 69 (225)
T PF08237_consen 28 SVAEGVANLDAAIRAAIAAGGPVVVFGYSQGAVVASNVLRRL 69 (225)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEEECHHHHHHHHHHHHH
Confidence 6666666666666652 236799999999999998877654
No 214
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=66.53 E-value=5.1 Score=37.60 Aligned_cols=35 Identities=17% Similarity=0.003 Sum_probs=27.4
Q ss_pred HHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCc
Q psy5044 181 LLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWY 215 (219)
Q Consensus 181 L~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~R 215 (219)
+.+.|...|+..-++.|.|+|+.+|..+|.+-++.
T Consensus 86 VlkaL~e~gl~p~~i~GsSaGAivaa~~~~~t~~E 120 (323)
T cd07231 86 VVRTLVEHQLLPRVIAGSSVGSIVCAIIATRTDEE 120 (323)
T ss_pred HHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCHHH
Confidence 44455555998888999999999999999865544
No 215
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=66.52 E-value=13 Score=37.47 Aligned_cols=45 Identities=11% Similarity=-0.011 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHhhh-----CCCcEEEEEEcHHHHHHHHHHHhCcCccc
Q psy5044 173 TMDELSNQLLFVLSYF-----GLHSVIGLGVGAGGNILARFALSHLWYCS 217 (219)
Q Consensus 173 Smd~lA~dL~~lLd~L-----gI~~~~lvG~SmGG~IAl~fA~~~P~RV~ 217 (219)
|+++.+....+++++. +..+.+++|..-||+-++-+|+.+|+.+.
T Consensus 117 Tl~DV~~ae~~Fv~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~g 166 (581)
T PF11339_consen 117 TLEDVMRAEAAFVEEVAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVG 166 (581)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCCceEEeccHHHHHHHHHHhcCcCccC
Confidence 8999888888888765 23488999999999999999999999875
No 216
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=66.31 E-value=6.4 Score=39.18 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=27.2
Q ss_pred HHHHHH-hhhCCCcEEEEEEcHHHHHHHHHHHhC
Q psy5044 180 QLLFVL-SYFGLHSVIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 180 dL~~lL-d~LgI~~~~lvG~SmGG~IAl~fA~~~ 212 (219)
-+.+++ +.+||++-.++|||+|=+.|+..|--.
T Consensus 253 aLa~ll~~~~GI~Pdav~GHSlGE~aAa~aAGvl 286 (538)
T TIGR02816 253 LLTQLLCDEFAIKPDFALGYSKGEASMWASLGVW 286 (538)
T ss_pred HHHHHHHHhcCCCCCEEeecCHHHHHHHHHhCCC
Confidence 356777 689999999999999999998877533
No 217
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=66.30 E-value=5.4 Score=38.14 Aligned_cols=36 Identities=14% Similarity=-0.035 Sum_probs=27.5
Q ss_pred HHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCcc
Q psy5044 181 LLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYC 216 (219)
Q Consensus 181 L~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV 216 (219)
+.+.|...|+..=+++|.|+||.+|..||.+-++++
T Consensus 85 VlkaL~e~gllp~iI~GtSAGAivaalla~~t~~el 120 (407)
T cd07232 85 VVKALLDADLLPNVISGTSGGSLVAALLCTRTDEEL 120 (407)
T ss_pred HHHHHHhCCCCCCEEEEECHHHHHHHHHHcCCHHHH
Confidence 444445558888889999999999999998655443
No 218
>KOG4840|consensus
Probab=65.53 E-value=7.3 Score=35.71 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHhhhCCC----cEEEEEEcHHHHHHHHHH
Q psy5044 172 PTMDELSNQLLFVLSYFGLH----SVIGLGVGAGGNILARFA 209 (219)
Q Consensus 172 ~Smd~lA~dL~~lLd~LgI~----~~~lvG~SmGG~IAl~fA 209 (219)
.|+++=+++|..+++|++.. .++++|||-|..=.+.|-
T Consensus 84 ~slk~D~edl~~l~~Hi~~~~fSt~vVL~GhSTGcQdi~yYl 125 (299)
T KOG4840|consen 84 FSLKDDVEDLKCLLEHIQLCGFSTDVVLVGHSTGCQDIMYYL 125 (299)
T ss_pred ccccccHHHHHHHHHHhhccCcccceEEEecCccchHHHHHH
Confidence 37888899999999998763 799999999998777665
No 219
>KOG1516|consensus
Probab=65.38 E-value=17 Score=34.84 Aligned_cols=37 Identities=19% Similarity=0.125 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhC--CCcEEEEEEcHHHHHHHHHHH
Q psy5044 174 MDELSNQLLFVLSYFG--LHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 174 md~lA~dL~~lLd~Lg--I~~~~lvG~SmGG~IAl~fA~ 210 (219)
+..--+|+.+-+..+| -++++++|||+||.++..+..
T Consensus 176 q~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~ 214 (545)
T KOG1516|consen 176 QLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTL 214 (545)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhc
Confidence 3344567778888887 478999999999999876554
No 220
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=65.22 E-value=8.4 Score=37.65 Aligned_cols=79 Identities=16% Similarity=0.267 Sum_probs=53.3
Q ss_pred Cccchhhhhc----hhhhhh-----h-hcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh----CCCcE
Q psy5044 128 NISNFQAFFN----FSDMRS-----L-LENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYF----GLHSV 193 (219)
Q Consensus 128 ~~~~f~~~~n----w~~~~~-----L-~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~L----gI~~~ 193 (219)
|-..|-.||+ |.++.. | ++..-||-+|.--.= +.+ .|-++.|+|+.++++.. +..++
T Consensus 258 ~sd~~av~~SGDGGWr~lDk~v~~~l~~~gvpVvGvdsLRYf-----W~~----rtPe~~a~Dl~r~i~~y~~~w~~~~~ 328 (456)
T COG3946 258 NSDTVAVFYSGDGGWRDLDKEVAEALQKQGVPVVGVDSLRYF-----WSE----RTPEQIAADLSRLIRFYARRWGAKRV 328 (456)
T ss_pred CcceEEEEEecCCchhhhhHHHHHHHHHCCCceeeeehhhhh-----hcc----CCHHHHHHHHHHHHHHHHHhhCcceE
Confidence 4445666664 888873 3 346778888844321 111 26789999999998765 67899
Q ss_pred EEEEEcHHHHHHHHHHHhCcCc
Q psy5044 194 IGLGVGAGGNILARFALSHLWY 215 (219)
Q Consensus 194 ~lvG~SmGG~IAl~fA~~~P~R 215 (219)
.++|+|.|+-|.-...-+-|.+
T Consensus 329 ~liGySfGADvlP~~~n~L~~~ 350 (456)
T COG3946 329 LLIGYSFGADVLPFAYNRLPPA 350 (456)
T ss_pred EEEeecccchhhHHHHHhCCHH
Confidence 9999999998865544444443
No 221
>KOG1551|consensus
Probab=65.01 E-value=4 Score=38.23 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=26.8
Q ss_pred hhCCCcEEEEEEcHHHHHHHHHHHhCcCccc
Q psy5044 187 YFGLHSVIGLGVGAGGNILARFALSHLWYCS 217 (219)
Q Consensus 187 ~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~ 217 (219)
+.|+.+..++|.||||-+|......|+.-|+
T Consensus 191 ~~g~g~~~~~g~Smgg~~a~~vgS~~q~Pva 221 (371)
T KOG1551|consen 191 ADGLGNLNLVGRSMGGDIANQVGSLHQKPVA 221 (371)
T ss_pred ccCcccceeeeeecccHHHHhhcccCCCCcc
Confidence 4588999999999999999999988876654
No 222
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=64.91 E-value=6.2 Score=37.83 Aligned_cols=35 Identities=23% Similarity=0.087 Sum_probs=28.9
Q ss_pred HHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCc
Q psy5044 181 LLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWY 215 (219)
Q Consensus 181 L~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~R 215 (219)
+.+.|...|+.+=++.|-|+||.||..+|.+-++.
T Consensus 101 v~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e 135 (391)
T cd07229 101 VVKALWLRGLLPRIITGTATGALIAALVGVHTDEE 135 (391)
T ss_pred HHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHH
Confidence 56667778998889999999999999999854443
No 223
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=64.15 E-value=16 Score=35.17 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=43.8
Q ss_pred cchhhhhchhhhhhhhcCceEEEEc-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh----h---CCCcEEEEEEcHH
Q psy5044 130 SNFQAFFNFSDMRSLLENFSVYHVN-APGQEEGAQPLADDYIYPTMDELSNQLLFVLSY----F---GLHSVIGLGVGAG 201 (219)
Q Consensus 130 ~~f~~~~nw~~~~~L~~~~rvIavD-lpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~----L---gI~~~~lvG~SmG 201 (219)
+...+-+.|...+ .++-+| .-|.|-|-+..+.. +.+=++.|+++.++|.. + .-.+++++|.|+|
T Consensus 104 ~l~~n~~sW~~~a------nllfiDqPvGtGfSy~~~~~~--~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYa 175 (433)
T PLN03016 104 SLFSTTYSWTKMA------NIIFLDQPVGSGFSYSKTPID--KTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYS 175 (433)
T ss_pred ceeeCCCchhhcC------cEEEecCCCCCCccCCCCCCC--ccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCcc
Confidence 3445567777554 579999 77888775433322 11212333445544444 3 3357999999999
Q ss_pred HHHHHHHHH
Q psy5044 202 GNILARFAL 210 (219)
Q Consensus 202 G~IAl~fA~ 210 (219)
|.-+-.+|.
T Consensus 176 G~yvP~la~ 184 (433)
T PLN03016 176 GMIVPALVQ 184 (433)
T ss_pred ceehHHHHH
Confidence 986655554
No 224
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=63.60 E-value=9.3 Score=35.62 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhCC--CcEEEEEEcHHHHHHHHHHHh
Q psy5044 177 LSNQLLFVLSYFGL--HSVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 177 lA~dL~~lLd~LgI--~~~~lvG~SmGG~IAl~fA~~ 211 (219)
--+||.+-+.++|- ++++++|+|.||..+......
T Consensus 192 AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s 228 (535)
T PF00135_consen 192 ALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLS 228 (535)
T ss_dssp HHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHG
T ss_pred HHHHHHhhhhhcccCCcceeeeeecccccccceeeec
Confidence 34788999999987 579999999999987776654
No 225
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=61.32 E-value=13 Score=30.23 Aligned_cols=29 Identities=24% Similarity=0.223 Sum_probs=21.9
Q ss_pred HHHHHhhhCC--CcEEEEEEcHHHHHHHHHH
Q psy5044 181 LLFVLSYFGL--HSVIGLGVGAGGNILARFA 209 (219)
Q Consensus 181 L~~lLd~LgI--~~~~lvG~SmGG~IAl~fA 209 (219)
+.+.|+..++ .--.+.|.|.|+.++..++
T Consensus 16 vl~~l~~~~~~~~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 16 VLSALAERGLLDCVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred HHHHHHHhCCccCCCEEEEEcHHHHHHHHHh
Confidence 3444455566 5667889999999999887
No 226
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=60.56 E-value=12 Score=33.36 Aligned_cols=33 Identities=12% Similarity=-0.028 Sum_probs=23.7
Q ss_pred HHHHHhhhCCC----cEEEEEEcHHHHHHHHHHHhCc
Q psy5044 181 LLFVLSYFGLH----SVIGLGVGAGGNILARFALSHL 213 (219)
Q Consensus 181 L~~lLd~LgI~----~~~lvG~SmGG~IAl~fA~~~P 213 (219)
+.+.|.+.++. .-.++|.|+|+.+|..||...+
T Consensus 22 Vl~~L~e~g~~l~~~~~~i~G~SAGAl~aa~~a~g~~ 58 (249)
T cd07220 22 VASCLLEHAPFLVANARKIYGASAGALTATALVTGVC 58 (249)
T ss_pred HHHHHHhcCCcccccCCeEEEEcHHHHHHHHHHcCCC
Confidence 33444444654 4568899999999999998664
No 227
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=59.87 E-value=10 Score=35.12 Aligned_cols=34 Identities=15% Similarity=0.009 Sum_probs=25.8
Q ss_pred HHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCc
Q psy5044 179 NQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHL 213 (219)
Q Consensus 179 ~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P 213 (219)
.-+.+++ ..++..-++.|.|+|+.+|..++.+-.
T Consensus 86 Gvl~aL~-e~~l~~~~i~GtSaGAi~aa~~~~~~~ 119 (298)
T cd07206 86 GVVKALW-EQDLLPRVISGSSAGAIVAALLGTHTD 119 (298)
T ss_pred HHHHHHH-HcCCCCCEEEEEcHHHHHHHHHHcCCc
Confidence 3344444 457877889999999999999997643
No 228
>KOG2237|consensus
Probab=59.16 E-value=37 Score=35.06 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=46.8
Q ss_pred EEEcCCCCCCCCCCCCCCC----CCCCHHHHHHHHHHHHhhhCC---CcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 151 YHVNAPGQEEGAQPLADDY----IYPTMDELSNQLLFVLSYFGL---HSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 151 IavDlpGHG~s~s~~~~~~----~~~Smd~lA~dL~~lLd~LgI---~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
.--|.||-|+....+-.+- .--+++|+-.-...+++. |. ++..+.|.|.||.++.+..=.+|+.+++
T Consensus 503 a~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~-gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~a 576 (712)
T KOG2237|consen 503 AYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVEN-GYTQPSKLAIEGGSAGGLLVGACINQRPDLFGA 576 (712)
T ss_pred EEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHc-CCCCccceeEecccCccchhHHHhccCchHhhh
Confidence 3448899887655443211 113788887766665544 44 5678889999999999999899998765
No 229
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=57.79 E-value=4.2 Score=33.99 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=33.9
Q ss_pred hhhhhcCceEEEEcCCCCCCCCC--CCCCCCCCCCHHHHHHHH----HHHHhhhC----CCcEEEEEEcHHHH
Q psy5044 141 MRSLLENFSVYHVNAPGQEEGAQ--PLADDYIYPTMDELSNQL----LFVLSYFG----LHSVIGLGVGAGGN 203 (219)
Q Consensus 141 ~~~L~~~~rvIavDlpGHG~s~s--~~~~~~~~~Smd~lA~dL----~~lLd~Lg----I~~~~lvG~SmGG~ 203 (219)
...|..+.|+.. -|||+... ..-.+ .+.++||+.| ..+.+..+ .+++.++|-||+..
T Consensus 50 ~~~l~g~~rw~l---VGHG~~~~~~~~l~g---~~a~~La~~l~~~~~~l~~~~~~~~~P~~IsLvGC~l~~~ 116 (157)
T PF11713_consen 50 PSKLQGKVRWQL---VGHGRDEFNNQTLAG---YSADELANKLIKFKQQLKQKYGINISPKKISLVGCSLADN 116 (157)
T ss_dssp GGGC-SEEEEEE---E--EESSTSSSEETT---EEHHHHHHHHHHHHHHHHHHHTTT--ESEEEEESSS-S-T
T ss_pred hHHcCCCceEEE---EEeCCCcCCCceeCC---CCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEEecccCC
Confidence 444655655555 59986511 11122 3889999999 66666663 47899999999987
No 230
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=57.33 E-value=3.9 Score=39.90 Aligned_cols=68 Identities=16% Similarity=0.071 Sum_probs=56.6
Q ss_pred EEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhC-C--CcEEEEEEcHHHHHHHHHHHhCcCcccCC
Q psy5044 151 YHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFG-L--HSVIGLGVGAGGNILARFALSHLWYCSLT 219 (219)
Q Consensus 151 IavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~Lg-I--~~~~lvG~SmGG~IAl~fA~~~P~RV~~~ 219 (219)
|.+..|=++.|. |.|.+..+.||.+-|+|..++.++|. | ++=+=-|.|=|||.++.+=.-||+-|.+|
T Consensus 92 l~vEhRfF~~Sr-P~p~DW~~Lti~QAA~D~Hri~~A~K~iY~~kWISTG~SKGGmTa~y~rrFyP~DVD~t 162 (448)
T PF05576_consen 92 LSVEHRFFGPSR-PEPADWSYLTIWQAASDQHRIVQAFKPIYPGKWISTGGSKGGMTAVYYRRFYPDDVDGT 162 (448)
T ss_pred EEEEEeeccCCC-CCCCCcccccHhHhhHHHHHHHHHHHhhccCCceecCcCCCceeEEEEeeeCCCCCCee
Confidence 888999998765 45566678999999999999999984 2 56677799999999999988889887654
No 231
>KOG1202|consensus
Probab=54.80 E-value=20 Score=39.90 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHhhhCC-CcEEEEEEcHHHHHHHHHHHh
Q psy5044 173 TMDELSNQLLFVLSYFGL-HSVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 173 Smd~lA~dL~~lLd~LgI-~~~~lvG~SmGG~IAl~fA~~ 211 (219)
|++.+|.--.+-|.+..- .+..++|+|+|+.++..+|..
T Consensus 2163 Sies~A~~yirqirkvQP~GPYrl~GYSyG~~l~f~ma~~ 2202 (2376)
T KOG1202|consen 2163 SIESLAAYYIRQIRKVQPEGPYRLAGYSYGACLAFEMASQ 2202 (2376)
T ss_pred hHHHHHHHHHHHHHhcCCCCCeeeeccchhHHHHHHHHHH
Confidence 899999999998888875 689999999999999999863
No 232
>KOG3043|consensus
Probab=53.88 E-value=20 Score=32.54 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=23.7
Q ss_pred HHHHHhhhC-CCcEEEEEEcHHHHHHHHHHHhCc
Q psy5044 181 LLFVLSYFG-LHSVIGLGVGAGGNILARFALSHL 213 (219)
Q Consensus 181 L~~lLd~Lg-I~~~~lvG~SmGG~IAl~fA~~~P 213 (219)
+.+.|+.-| .+++=++|.-|||-++..+-...|
T Consensus 109 v~k~lk~~g~~kkIGv~GfCwGak~vv~~~~~~~ 142 (242)
T KOG3043|consen 109 VVKWLKNHGDSKKIGVVGFCWGAKVVVTLSAKDP 142 (242)
T ss_pred HHHHHHHcCCcceeeEEEEeecceEEEEeeccch
Confidence 344444556 567779999999998877766665
No 233
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=51.91 E-value=34 Score=34.04 Aligned_cols=93 Identities=13% Similarity=0.127 Sum_probs=57.4
Q ss_pred hHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEc-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy5044 108 ALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVN-APGQEEGAQPLADDYIYPTMDELSNQLLFVLS 186 (219)
Q Consensus 108 ~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavD-lpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd 186 (219)
++-..+-+.|=+.|.... ..+-+-|=..|-++.. +|-+| .-|-|-|.+..++. . -+......|+..+++
T Consensus 115 S~~g~l~elGP~rI~~~~--~P~~~~NP~SW~~~ad------LvFiDqPvGTGfS~a~~~e~-~-~d~~~~~~D~~~~~~ 184 (498)
T COG2939 115 SVTGLLGELGPKRIQSGT--SPSYPDNPGSWLDFAD------LVFIDQPVGTGFSRALGDEK-K-KDFEGAGKDVYSFLR 184 (498)
T ss_pred hhhhhhhhcCCeeeeCCC--CCCCCCCccccccCCc------eEEEecCcccCccccccccc-c-cchhccchhHHHHHH
Confidence 444445566655555442 2233345556666654 49999 66887777522221 2 256666666666655
Q ss_pred hh-------C--CCcEEEEEEcHHHHHHHHHHH
Q psy5044 187 YF-------G--LHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 187 ~L-------g--I~~~~lvG~SmGG~IAl~fA~ 210 (219)
.+ . ..+.+++|-|+||.=+-+||.
T Consensus 185 ~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~ 217 (498)
T COG2939 185 LFFDKFPHYARLLSPKFLAGESYGGHYIPVFAH 217 (498)
T ss_pred HHHHHHHHHhhhcCceeEeeccccchhhHHHHH
Confidence 43 2 358999999999998888775
No 234
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=51.58 E-value=32 Score=31.66 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHhh---hCCCcEEEEEEcHHHHHHHHHHHhCcC
Q psy5044 173 TMDELSNQLLFVLSY---FGLHSVIGLGVGAGGNILARFALSHLW 214 (219)
Q Consensus 173 Smd~lA~dL~~lLd~---LgI~~~~lvG~SmGG~IAl~fA~~~P~ 214 (219)
.+.+..+.+-+.|.. |. +-++.+|+|-||.++-+++.++|+
T Consensus 60 ~v~~Qv~~vc~~l~~~p~L~-~G~~~IGfSQGgl~lRa~vq~c~~ 103 (279)
T PF02089_consen 60 NVNDQVEQVCEQLANDPELA-NGFNAIGFSQGGLFLRAYVQRCND 103 (279)
T ss_dssp HHHHHHHHHHHHHHH-GGGT-T-EEEEEETCHHHHHHHHHHH-TS
T ss_pred HHHHHHHHHHHHHhhChhhh-cceeeeeeccccHHHHHHHHHCCC
Confidence 566666666666654 32 569999999999999999999975
No 235
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=51.36 E-value=13 Score=36.99 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhhCCC--cEEEEEEcHHHHHHHHHHHhC
Q psy5044 175 DELSNQLLFVLSYFGLH--SVIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI~--~~~lvG~SmGG~IAl~fA~~~ 212 (219)
+.+.+-|.+-|+.||.+ ..++-|.|||.+=|+.|+++.
T Consensus 339 ~~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l 378 (511)
T TIGR03712 339 QGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKL 378 (511)
T ss_pred HHHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccC
Confidence 45666778888999995 589999999999999999865
No 236
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=48.28 E-value=27 Score=32.42 Aligned_cols=40 Identities=18% Similarity=-0.047 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCccc
Q psy5044 178 SNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCS 217 (219)
Q Consensus 178 A~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~ 217 (219)
|.-|.++|++-.+.-=-++|.|+||.-+..|..+-|.|-+
T Consensus 27 AGVLD~fl~a~~~~f~~~~GvSAGA~n~~aYls~Q~gra~ 66 (292)
T COG4667 27 AGVLDEFLRANFNPFDLVVGVSAGALNLVAYLSKQRGRAR 66 (292)
T ss_pred HHHHHHHHHhccCCcCeeeeecHhHHhHHHHhhcCCchHH
Confidence 4557778866666655688999999999999998887754
No 237
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=46.89 E-value=15 Score=33.57 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=16.6
Q ss_pred EEEEEcHHHHHHHHHHHhC
Q psy5044 194 IGLGVGAGGNILARFALSH 212 (219)
Q Consensus 194 ~lvG~SmGG~IAl~fA~~~ 212 (219)
.++|-|+||.||+.+|..+
T Consensus 35 ~i~GTStGgiIA~~la~g~ 53 (312)
T cd07212 35 WIAGTSTGGILALALLHGK 53 (312)
T ss_pred EEEeeChHHHHHHHHHcCC
Confidence 4789999999999999754
No 238
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=45.85 E-value=21 Score=31.45 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=19.3
Q ss_pred CCCcEEEEEEcHHHHHHHHHHHh
Q psy5044 189 GLHSVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 189 gI~~~~lvG~SmGG~IAl~fA~~ 211 (219)
+.++++++++|||-++|.++-..
T Consensus 55 ~y~~i~lvAWSmGVw~A~~~l~~ 77 (213)
T PF04301_consen 55 GYREIYLVAWSMGVWAANRVLQG 77 (213)
T ss_pred cCceEEEEEEeHHHHHHHHHhcc
Confidence 35899999999999999887543
No 239
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=45.48 E-value=29 Score=35.74 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHhhhCC---CcEEEEEEcHHHHHHHHHHHhCcCcccC
Q psy5044 172 PTMDELSNQLLFVLSYFGL---HSVIGLGVGAGGNILARFALSHLWYCSL 218 (219)
Q Consensus 172 ~Smd~lA~dL~~lLd~LgI---~~~~lvG~SmGG~IAl~fA~~~P~RV~~ 218 (219)
-|+.|+-+....+++. |. +++...|-|+||++..+.|-..|+.+++
T Consensus 506 NTf~DFIa~a~~Lv~~-g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~ 554 (682)
T COG1770 506 NTFTDFIAAARHLVKE-GYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAG 554 (682)
T ss_pred ccHHHHHHHHHHHHHc-CcCCccceEEeccCchhHHHHHHHhhChhhhhh
Confidence 3889998877766644 33 4689999999999999999999998775
No 240
>PRK04148 hypothetical protein; Provisional
Probab=44.24 E-value=29 Score=28.50 Aligned_cols=38 Identities=16% Similarity=0.145 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHh
Q psy5044 174 MDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 174 md~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~ 211 (219)
|+++|+.|.+.+....-.++..+|.+-|..+|..++..
T Consensus 1 ~~~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~ 38 (134)
T PRK04148 1 MDTIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES 38 (134)
T ss_pred ChHHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC
Confidence 46788888887755444679999999888899888853
No 241
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=44.13 E-value=31 Score=32.81 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=25.1
Q ss_pred HHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhC
Q psy5044 179 NQLLFVLSYFGLHSVIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 179 ~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~ 212 (219)
+.+.++.+..-=.+..+-|||+||.+|..+..+|
T Consensus 264 dI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~f 297 (425)
T COG5153 264 DILGAVRRIYPDARIWLTGHSLGGAIASLLGIRF 297 (425)
T ss_pred HHHHHHHHhCCCceEEEeccccchHHHHHhcccc
Confidence 3344444444456788999999999999888776
No 242
>KOG4540|consensus
Probab=44.13 E-value=31 Score=32.81 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=25.1
Q ss_pred HHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhC
Q psy5044 179 NQLLFVLSYFGLHSVIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 179 ~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~ 212 (219)
+.+.++.+..-=.+..+-|||+||.+|..+..+|
T Consensus 264 dI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~f 297 (425)
T KOG4540|consen 264 DILGAVRRIYPDARIWLTGHSLGGAIASLLGIRF 297 (425)
T ss_pred HHHHHHHHhCCCceEEEeccccchHHHHHhcccc
Confidence 3344444444456788999999999999888776
No 243
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=43.48 E-value=50 Score=34.52 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=14.3
Q ss_pred CCCCEEEEeCCCCCChhh
Q psy5044 46 RGKPAILTYHDLGLNYIS 63 (219)
Q Consensus 46 ~~~p~il~~Hd~G~n~~~ 63 (219)
.++|+.|.-||-|.|-+.
T Consensus 197 dGrpV~VIAndkg~~tke 214 (762)
T PLN03229 197 DGKRYMFIGHQKGRNTKE 214 (762)
T ss_pred CCEEEEEEEecCCccccc
Confidence 468999999999976543
No 244
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=42.60 E-value=31 Score=31.99 Aligned_cols=39 Identities=21% Similarity=0.053 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHhhhC--CCcEEEEEEcHHHHHHHHHHH
Q psy5044 172 PTMDELSNQLLFVLSYFG--LHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 172 ~Smd~lA~dL~~lLd~Lg--I~~~~lvG~SmGG~IAl~fA~ 210 (219)
|.+--..-.+.+.+.+.+ +++..++|||+|=|-|+..+.
T Consensus 64 Pal~~~s~a~~~~l~~~~~~~~p~~~aGHSlGEysAl~~ag 104 (310)
T COG0331 64 PALLLVSLAAYRVLAEQGLGVKPDFVAGHSLGEYSALAAAG 104 (310)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCceeecccHhHHHHHHHcc
Confidence 344444455566666655 888999999999999988764
No 245
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.29 E-value=22 Score=31.44 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=29.1
Q ss_pred HHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCccc
Q psy5044 181 LLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWYCS 217 (219)
Q Consensus 181 L~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~RV~ 217 (219)
-.-+++..=..+.++-|-||||+-|+.|..+||+...
T Consensus 91 erYv~eEalpgs~~~sgcsmGayhA~nfvfrhP~lft 127 (227)
T COG4947 91 ERYVIEEALPGSTIVSGCSMGAYHAANFVFRHPHLFT 127 (227)
T ss_pred HHHHHHhhcCCCccccccchhhhhhhhhheeChhHhh
Confidence 3344555445778889999999999999999998654
No 246
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=42.02 E-value=33 Score=30.79 Aligned_cols=32 Identities=19% Similarity=0.099 Sum_probs=22.2
Q ss_pred HHHHHHHhhhCCC---cE-EEEEEcHHHHHHHHHHH
Q psy5044 179 NQLLFVLSYFGLH---SV-IGLGVGAGGNILARFAL 210 (219)
Q Consensus 179 ~dL~~lLd~LgI~---~~-~lvG~SmGG~IAl~fA~ 210 (219)
..|.++.+.++.. .+ .++|-|.||.||+.+|.
T Consensus 25 ~vL~~Le~~~~~~i~~~fDli~GTStGgiiA~~la~ 60 (308)
T cd07211 25 EILRKIEKLTGKPIHELFDYICGVSTGAILAFLLGL 60 (308)
T ss_pred HHHHHHHHHhCCCchhhcCEEEecChhHHHHHHHhc
Confidence 3455555555543 12 37899999999999986
No 247
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=41.52 E-value=63 Score=33.25 Aligned_cols=99 Identities=17% Similarity=0.290 Sum_probs=58.2
Q ss_pred CCCCCEEEEeCCCCCChh---------hhhhcccChhhHHHhhcc-ceEEEec-CCCCCCCCCCcccc---------ccc
Q psy5044 45 NRGKPAILTYHDLGLNYI---------SNFQAFFNFSDMRSLLEN-FSVYHVN-APGQEEGAQPLADD---------VTQ 104 (219)
Q Consensus 45 ~~~~p~il~~Hd~G~n~~---------~~~~~~~~~~~~~~l~~~-~~v~hv~-~pG~~~~a~~l~~~---------~~~ 104 (219)
++++-+||+||++.-... ..|. .+|+-|.++ |+++.++ +--...+-..||+. |.+
T Consensus 45 ~~~~~~VL~YH~V~d~~~~~~~~~Vspe~Fe-----~qL~~Lk~nGY~~ISl~el~~~~~g~~~LP~K~VaLTFDDGy~s 119 (671)
T PRK14582 45 PHNGFVAIAYHDVEDEAADQRFMSVRTSALR-----EQFAWLRENGYQPVSVAQILEAHRGGKPLPEKAVLLTFDDGYSS 119 (671)
T ss_pred CCCceEEEEeCcccCCcccccccccCHHHHH-----HHHHHHHHCcCEEccHHHHHHHHhcCCCCCCCeEEEEEEcCCCc
Confidence 357789999999963211 1132 678888875 8876554 11111122233333 334
Q ss_pred chhhHHHHHHhcCccccc-------cCCCCCccch-------hhhhchhhhhhhhcCc
Q psy5044 105 HPLALLMIIRHYGMDICY-------DTDHTNISNF-------QAFFNFSDMRSLLENF 148 (219)
Q Consensus 105 ~~~~~~~v~~~~~~~~~~-------~~~~~~~~~f-------~~~~nw~~~~~L~~~~ 148 (219)
.-+-...||.+||++-++ +..+.....| ..+.+|+++..+.++-
T Consensus 120 ~yt~A~PILkkygvpATfFlvg~wi~~~~~~~~~~~~~~~~r~~~LtWeqIreM~~sG 177 (671)
T PRK14582 120 FYTRVFPILQAFQWPAVWAPVGSWVDTPADQPVKFGGEMVPREYFATWQQVREVARSR 177 (671)
T ss_pred hHHHHHHHHHHcCCCEEEEEechhhccCccccccccccccccccCCCHHHHHHHHhCC
Confidence 445677899999999764 2222111122 3578999999977654
No 248
>KOG3253|consensus
Probab=40.70 E-value=18 Score=37.24 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=48.2
Q ss_pred hhchhhhhh-hhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh--------hhCCCcEEEEEEcHHHHHH
Q psy5044 135 FFNFSDMRS-LLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLS--------YFGLHSVIGLGVGAGGNIL 205 (219)
Q Consensus 135 ~~nw~~~~~-L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd--------~LgI~~~~lvG~SmGG~IA 205 (219)
..+|..+-. +.+...+-.+|++---+| .++.+.++.+..+.. ++-...++++|.|||+.++
T Consensus 195 ~~~wqs~lsl~gevvev~tfdl~n~igG----------~nI~h~ae~~vSf~r~kvlei~gefpha~IiLvGrsmGAlVa 264 (784)
T KOG3253|consen 195 MWSWQSRLSLKGEVVEVPTFDLNNPIGG----------ANIKHAAEYSVSFDRYKVLEITGEFPHAPIILVGRSMGALVA 264 (784)
T ss_pred HHhHHHHHhhhceeeeeccccccCCCCC----------cchHHHHHHHHHHhhhhhhhhhccCCCCceEEEecccCceee
Confidence 357888886 556777778887743222 167777777777766 4556789999999999888
Q ss_pred HHHHHhC
Q psy5044 206 ARFALSH 212 (219)
Q Consensus 206 l~fA~~~ 212 (219)
.+.+.-.
T Consensus 265 chVSpsn 271 (784)
T KOG3253|consen 265 CHVSPSN 271 (784)
T ss_pred EEecccc
Confidence 7766533
No 249
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=40.23 E-value=35 Score=24.32 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=30.1
Q ss_pred CCCCEEEEeCCCCCCh-hhhhhcccChhhHHH-hhccceEEEecC
Q psy5044 46 RGKPAILTYHDLGLNY-ISNFQAFFNFSDMRS-LLENFSVYHVNA 88 (219)
Q Consensus 46 ~~~p~il~~Hd~G~n~-~~~~~~~~~~~~~~~-l~~~~~v~hv~~ 88 (219)
.+||++|.++.=..-. +..-..++++|++++ +.++|..+.||+
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~ 60 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDV 60 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEET
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEc
Confidence 5789888886444322 111224778999999 788999988887
No 250
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=40.04 E-value=28 Score=31.70 Aligned_cols=30 Identities=17% Similarity=-0.032 Sum_probs=22.9
Q ss_pred HHHHHhhhCCCc------EEEEEEcHHHHHHHHHHH
Q psy5044 181 LLFVLSYFGLHS------VIGLGVGAGGNILARFAL 210 (219)
Q Consensus 181 L~~lLd~LgI~~------~~lvG~SmGG~IAl~fA~ 210 (219)
+.++|...|+.. ..++|||+|=+.|+..|-
T Consensus 108 ~~~~l~~~g~~~~~~~~~~~~~GHSlGE~aA~~~AG 143 (343)
T PLN02752 108 AVEKLRARDGGQAVIDSVDVCAGLSLGEYTALVFAG 143 (343)
T ss_pred HHHHHHhcCCCcccccCCCeeeeccHHHHHHHHHhC
Confidence 556778888643 357999999999988774
No 251
>KOG1282|consensus
Probab=39.21 E-value=59 Score=31.91 Aligned_cols=75 Identities=12% Similarity=0.159 Sum_probs=52.2
Q ss_pred ccchhhhhchhhhhhhhcCceEEEEcCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh-------CCCcEEEEEEcH
Q psy5044 129 ISNFQAFFNFSDMRSLLENFSVYHVNAP-GQEEGAQPLADDYIYPTMDELSNQLLFVLSYF-------GLHSVIGLGVGA 200 (219)
Q Consensus 129 ~~~f~~~~nw~~~~~L~~~~rvIavDlp-GHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~L-------gI~~~~lvG~Sm 200 (219)
++++-|-|.|...+. +|-+|.| |-|-|=+..+.++. .+-+.-|+|+.++|.+. .=.++.+.|-|+
T Consensus 105 ~tL~~N~ySWnk~aN------iLfLd~PvGvGFSYs~~~~~~~-~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESY 177 (454)
T KOG1282|consen 105 KTLYLNPYSWNKEAN------ILFLDQPVGVGFSYSNTSSDYK-TGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESY 177 (454)
T ss_pred CcceeCCcccccccc------EEEEecCCcCCccccCCCCcCc-CCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccc
Confidence 588999999998875 5888977 55556554443332 35677777777666543 336799999999
Q ss_pred HHHHHHHHHH
Q psy5044 201 GGNILARFAL 210 (219)
Q Consensus 201 GG~IAl~fA~ 210 (219)
+|...=++|.
T Consensus 178 AG~YVP~La~ 187 (454)
T KOG1282|consen 178 AGHYVPALAQ 187 (454)
T ss_pred cceehHHHHH
Confidence 9965555553
No 252
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=38.63 E-value=37 Score=35.27 Aligned_cols=32 Identities=25% Similarity=0.206 Sum_probs=25.2
Q ss_pred HHHHHHHh---hhCCCcEEEEEEcHHHHHHHHHHH
Q psy5044 179 NQLLFVLS---YFGLHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 179 ~dL~~lLd---~LgI~~~~lvG~SmGG~IAl~fA~ 210 (219)
.++.+.|+ ..++.--+++|.|+||.++..+|.
T Consensus 51 ~~l~~~l~~~~~~~~~~d~iaGTSAGAInaa~lA~ 85 (739)
T TIGR03607 51 GALLELLGAHLRLRVRVDVISGTSAGGINGVLLAY 85 (739)
T ss_pred HHHHHHhhhhhccCCCCceEEeeCHHHHHHHHHHc
Confidence 33555555 557887899999999999999996
No 253
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=37.72 E-value=27 Score=31.17 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=17.1
Q ss_pred EEEEEcHHHHHHHHHHHhC
Q psy5044 194 IGLGVGAGGNILARFALSH 212 (219)
Q Consensus 194 ~lvG~SmGG~IAl~fA~~~ 212 (219)
.++|.|.||.||+.+|..+
T Consensus 37 ~i~GTSaGaiia~~la~g~ 55 (288)
T cd07213 37 LFAGTSAGSLIALGLALGY 55 (288)
T ss_pred EEEEeCHHHHHHHHHHcCc
Confidence 6889999999999999765
No 254
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=37.16 E-value=65 Score=33.16 Aligned_cols=99 Identities=16% Similarity=0.305 Sum_probs=57.9
Q ss_pred CCCCCEEEEeCCCCCChh---------hhhhcccChhhHHHhhcc-ceEEEec-CCCCCCCCCCcccc---------ccc
Q psy5044 45 NRGKPAILTYHDLGLNYI---------SNFQAFFNFSDMRSLLEN-FSVYHVN-APGQEEGAQPLADD---------VTQ 104 (219)
Q Consensus 45 ~~~~p~il~~Hd~G~n~~---------~~~~~~~~~~~~~~l~~~-~~v~hv~-~pG~~~~a~~l~~~---------~~~ 104 (219)
++++.+||+||++.-+.. ..|. .+|+-|.++ |+++-++ +-....+...||+- |.+
T Consensus 45 ~~~~~~VLmYH~V~d~~~~~~~~~Vspe~Fe-----~QL~~Lk~nGY~~VSL~el~~~~~g~~~LP~KaV~LTFDDGy~s 119 (672)
T PRK14581 45 QKNTFVVIAYHDVEDDSADQRYLSVRSSALN-----EQFVWLRDNGYHVVSVDQILAARNGGPTLPDKAVLLTFDDGYSS 119 (672)
T ss_pred CCCceEEEEeCcccCCCCccCccccCHHHHH-----HHHHHHHHCcCEEecHHHHHHHHhcCCCCCCCeEEEEEEcCCcc
Confidence 467789999999975421 1132 678888775 8775432 11112233344444 333
Q ss_pred chhhHHHHHHhcCccccc-------cCCCCCccch-------hhhhchhhhhhhhcCc
Q psy5044 105 HPLALLMIIRHYGMDICY-------DTDHTNISNF-------QAFFNFSDMRSLLENF 148 (219)
Q Consensus 105 ~~~~~~~v~~~~~~~~~~-------~~~~~~~~~f-------~~~~nw~~~~~L~~~~ 148 (219)
.-+-...||++||++-.+ +..+.-.-.| ..+.+|+++..+.++-
T Consensus 120 ny~~AlPILKkyg~pATfFvVg~wid~~~~~~v~~~~~~~~r~~~LTW~qIrEM~~sG 177 (672)
T PRK14581 120 FYRRVYPLLKAYKWSAVLAPVGTWIDTATDKKVDFGGLSTDRDRFATWKQITEMSKSG 177 (672)
T ss_pred hHHHHHHHHHHcCCCEEEEEechhhccCcccccccccccccccccCCHHHHHHHHHCC
Confidence 345667799999999653 2222111111 2478999999877653
No 255
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1. Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels.
Probab=36.65 E-value=46 Score=32.05 Aligned_cols=33 Identities=15% Similarity=0.052 Sum_probs=22.7
Q ss_pred HHHHHHHHhhhCCC----cEEEEEEcHHHHHHHHHHHh
Q psy5044 178 SNQLLFVLSYFGLH----SVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 178 A~dL~~lLd~LgI~----~~~lvG~SmGG~IAl~fA~~ 211 (219)
+..+.++++ .+++ --.++|.|+|+.+|..||..
T Consensus 28 vGVl~aL~E-~gp~ll~~~d~IaGtSAGALvAAl~asG 64 (382)
T cd07219 28 AGVVDALRD-LAPRMLETAHRVAGTSAGSVIAALVVCG 64 (382)
T ss_pred HHHHHHHHh-cCCcccccCCeEEEEcHHHHHHHHHHhC
Confidence 334444444 4532 24589999999999999875
No 256
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=36.46 E-value=24 Score=31.33 Aligned_cols=73 Identities=8% Similarity=0.058 Sum_probs=46.4
Q ss_pred CCCcccccccchhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhh---h-----hcCceEEEEcCCCCCCCCCCCC
Q psy5044 95 AQPLADDVTQHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRS---L-----LENFSVYHVNAPGQEEGAQPLA 166 (219)
Q Consensus 95 a~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~---L-----~~~~rvIavDlpGHG~s~s~~~ 166 (219)
.|++|..|-+.+.++.+.|+.++.. +. +||..+.| + +.+||+.- |.-=+. .
T Consensus 120 ~p~fP~ey~~~A~~~ae~L~~Lr~~-------------~~-l~WTfvSPaa~f~PGerTg~yrlgg-D~ll~n------~ 178 (211)
T COG2910 120 TPDFPAEYKPEALAQAEFLDSLRAE-------------KS-LDWTFVSPAAFFEPGERTGNYRLGG-DQLLVN------A 178 (211)
T ss_pred CCCCchhHHHHHHHHHHHHHHHhhc-------------cC-cceEEeCcHHhcCCccccCceEecc-ceEEEc------C
Confidence 4668999999999999999999877 23 78876664 1 12333211 111110 1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh
Q psy5044 167 DDYIYPTMDELSNQLLFVLSYF 188 (219)
Q Consensus 167 ~~~~~~Smd~lA~dL~~lLd~L 188 (219)
.+....|++|||-.+..-+++=
T Consensus 179 ~G~SrIS~aDYAiA~lDe~E~~ 200 (211)
T COG2910 179 KGESRISYADYAIAVLDELEKP 200 (211)
T ss_pred CCceeeeHHHHHHHHHHHHhcc
Confidence 1223469999998888777654
No 257
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=35.43 E-value=89 Score=29.35 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=13.2
Q ss_pred CCCCEEEEeCCCCCChh
Q psy5044 46 RGKPAILTYHDLGLNYI 62 (219)
Q Consensus 46 ~~~p~il~~Hd~G~n~~ 62 (219)
+++|+.+.-|+-|.+-+
T Consensus 106 ~GrpV~VIa~d~g~~~~ 122 (319)
T PRK05724 106 NGRPVMVIGHQKGRDTK 122 (319)
T ss_pred CCEEEEEEEecCCcccc
Confidence 46899999999886543
No 258
>KOG2385|consensus
Probab=34.92 E-value=55 Score=33.21 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=20.5
Q ss_pred hhhCCCcEEEEEEcHHHHHHHHHHH
Q psy5044 186 SYFGLHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 186 d~LgI~~~~lvG~SmGG~IAl~fA~ 210 (219)
..+|.++++++|+|+|+.+......
T Consensus 442 r~qG~RPVTLVGFSLGARvIf~CL~ 466 (633)
T KOG2385|consen 442 RSQGNRPVTLVGFSLGARVIFECLL 466 (633)
T ss_pred hccCCCceeEeeeccchHHHHHHHH
Confidence 5568899999999999998775443
No 259
>COG0218 Predicted GTPase [General function prediction only]
Probab=34.48 E-value=31 Score=30.38 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=15.3
Q ss_pred hhhhchhhhhhhhcCceEEEEcCCCCCCCC
Q psy5044 133 QAFFNFSDMRSLLENFSVYHVNAPGQEEGA 162 (219)
Q Consensus 133 ~~~~nw~~~~~L~~~~rvIavDlpGHG~s~ 162 (219)
.|||+|.+- ...+|+||+|-.+
T Consensus 63 iNff~~~~~--------~~lVDlPGYGyAk 84 (200)
T COG0218 63 INFFEVDDE--------LRLVDLPGYGYAK 84 (200)
T ss_pred eEEEEecCc--------EEEEeCCCccccc
Confidence 456666553 5789999998654
No 260
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=34.17 E-value=34 Score=31.92 Aligned_cols=19 Identities=32% Similarity=0.258 Sum_probs=16.7
Q ss_pred EEEEEcHHHHHHHHHHHhC
Q psy5044 194 IGLGVGAGGNILARFALSH 212 (219)
Q Consensus 194 ~lvG~SmGG~IAl~fA~~~ 212 (219)
.++|-|.||.||+.+|..+
T Consensus 44 lIaGTStGgIIAa~la~g~ 62 (344)
T cd07217 44 FVGGTSTGSIIAACIALGM 62 (344)
T ss_pred EEEEecHHHHHHHHHHcCC
Confidence 5889999999999999754
No 261
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=33.45 E-value=1.3e+02 Score=28.38 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=13.6
Q ss_pred CCCCEEEEeCCCCCChh
Q psy5044 46 RGKPAILTYHDLGLNYI 62 (219)
Q Consensus 46 ~~~p~il~~Hd~G~n~~ 62 (219)
.++|+.|.-||-|.+.+
T Consensus 109 ~GrpV~VIa~dkg~~~~ 125 (322)
T CHL00198 109 NGRTIVFLGHQRGRNTK 125 (322)
T ss_pred CCEEEEEEEecCCccch
Confidence 46899999999986544
No 262
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=33.35 E-value=89 Score=27.92 Aligned_cols=110 Identities=11% Similarity=0.155 Sum_probs=62.3
Q ss_pred CCCCEEEEeCCCC---CChhhhhhcccChhhHHH--------hhc--cceEEEecCCCCCCCCCCcccccccchhhHHHH
Q psy5044 46 RGKPAILTYHDLG---LNYISNFQAFFNFSDMRS--------LLE--NFSVYHVNAPGQEEGAQPLADDVTQHPLALLMI 112 (219)
Q Consensus 46 ~~~p~il~~Hd~G---~n~~~~~~~~~~~~~~~~--------l~~--~~~v~hv~~pG~~~~a~~l~~~~~~~~~~~~~v 112 (219)
.+-.+++++.+.+ -+. ..+..++.++..++ +.+ .|.=+++|-+.. .++--+.|..+-+.+-.-
T Consensus 57 ~~~kv~~~i~~~~~~~~~~-~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~---~~~d~~~~~~fl~~lr~~ 132 (313)
T cd02874 57 RGVKPLLVITNLTNGNFDS-ELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENV---PPEDREAYTQFLRELSDR 132 (313)
T ss_pred CCCeEEEEEecCCCCCCCH-HHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccC---CHHHHHHHHHHHHHHHHH
Confidence 3456777777654 222 22445555554332 222 244445555432 111122345555555555
Q ss_pred HHhcCccccccCCCCCc----cchhhhhchhhhhhhhcCceEEEEcCCCCC
Q psy5044 113 IRHYGMDICYDTDHTNI----SNFQAFFNFSDMRSLLENFSVYHVNAPGQE 159 (219)
Q Consensus 113 ~~~~~~~~~~~~~~~~~----~~f~~~~nw~~~~~L~~~~rvIavDlpGHG 159 (219)
++.-|...+++..+... ..+...|+++.+....+.+.+-++|..|.+
T Consensus 133 l~~~~~~lsv~~~p~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~ 183 (313)
T cd02874 133 LHPAGYTLSTAVVPKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRG 183 (313)
T ss_pred hhhcCcEEEEEecCccccccccccccccCHHHHHhhCCEEEEEEeccCCCC
Confidence 66556666666554432 245567889999999999999999998874
No 263
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=32.78 E-value=83 Score=28.67 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=18.2
Q ss_pred cEEEEEEcHHHHHHHHHHHhCcC
Q psy5044 192 SVIGLGVGAGGNILARFALSHLW 214 (219)
Q Consensus 192 ~~~lvG~SmGG~IAl~fA~~~P~ 214 (219)
++..+|||||+-+-+-....++.
T Consensus 91 P~~~vGHSlGcklhlLi~s~~~~ 113 (250)
T PF07082_consen 91 PVYGVGHSLGCKLHLLIGSLFDV 113 (250)
T ss_pred CeeeeecccchHHHHHHhhhccC
Confidence 46789999999988777776643
No 264
>KOG3967|consensus
Probab=31.88 E-value=46 Score=30.50 Aligned_cols=35 Identities=11% Similarity=-0.052 Sum_probs=29.0
Q ss_pred HHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCc
Q psy5044 181 LLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWY 215 (219)
Q Consensus 181 L~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~R 215 (219)
-..++.-..-+.+.++-||+||+..+.+..++|+-
T Consensus 180 w~~~v~pa~~~sv~vvahsyGG~~t~~l~~~f~~d 214 (297)
T KOG3967|consen 180 WKNIVLPAKAESVFVVAHSYGGSLTLDLVERFPDD 214 (297)
T ss_pred HHHHhcccCcceEEEEEeccCChhHHHHHHhcCCc
Confidence 34455566778999999999999999999999863
No 265
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=31.75 E-value=54 Score=31.95 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=52.1
Q ss_pred hh-hhhcCceEEEEcCCCCCCCCC----CCCC------CCCCCCHHHHHHHHHHHHhhh---CCCcEEEEEEcHHHHHHH
Q psy5044 141 MR-SLLENFSVYHVNAPGQEEGAQ----PLAD------DYIYPTMDELSNQLLFVLSYF---GLHSVIGLGVGAGGNILA 206 (219)
Q Consensus 141 ~~-~L~~~~rvIavDlpGHG~s~s----~~~~------~~~~~Smd~lA~dL~~lLd~L---gI~~~~lvG~SmGG~IAl 206 (219)
|. +|+..|.++.=|. ||..+.. ++.. ++.+.++.+.+..-.++++++ ..++..+.|-|-||.-++
T Consensus 52 ~~~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl 130 (474)
T PF07519_consen 52 MATALARGYATASTDS-GHQGSAGSDDASFGNNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGL 130 (474)
T ss_pred cchhhhcCeEEEEecC-CCCCCcccccccccCCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHH
Confidence 44 4777777788775 7753321 1110 111335666666666666665 567899999999999999
Q ss_pred HHHHhCcCcccC
Q psy5044 207 RFALSHLWYCSL 218 (219)
Q Consensus 207 ~fA~~~P~RV~~ 218 (219)
..|-|||+-..+
T Consensus 131 ~~AQryP~dfDG 142 (474)
T PF07519_consen 131 MAAQRYPEDFDG 142 (474)
T ss_pred HHHHhChhhcCe
Confidence 999999986543
No 266
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=31.53 E-value=44 Score=39.39 Aligned_cols=31 Identities=13% Similarity=-0.021 Sum_probs=26.7
Q ss_pred HHHHHHhhhCCCcEEEEEEcHHHHHHHHHHH
Q psy5044 180 QLLFVLSYFGLHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 180 dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~ 210 (219)
.+.++|..+||++-.++|||+|=+.|+..|-
T Consensus 663 Al~~lL~~~Gi~Pd~v~GHSlGE~aAa~aAG 693 (2582)
T TIGR02813 663 GQYKLFTQAGFKADMTAGHSFGELSALCAAG 693 (2582)
T ss_pred HHHHHHHHcCCccceeecCCHHHHHHHHHhC
Confidence 4567789999999999999999999987763
No 267
>KOG1283|consensus
Probab=31.30 E-value=98 Score=29.89 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=44.4
Q ss_pred ceEEEEcCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhh-------CCCcEEEEEEcHHHHHHHHHHHhC
Q psy5044 148 FSVYHVNAP-GQEEGAQPLADDYIYPTMDELSNQLLFVLSYF-------GLHSVIGLGVGAGGNILARFALSH 212 (219)
Q Consensus 148 ~rvIavDlp-GHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~L-------gI~~~~lvG~SmGG~IAl~fA~~~ 212 (219)
..++.+|-| |-|-|=-.-...|. -+.++.|.|+.++|..+ .-.+.+++--|+||-+|..||+.-
T Consensus 72 adllfvDnPVGaGfSyVdg~~~Y~-~~~~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l 143 (414)
T KOG1283|consen 72 ADLLFVDNPVGAGFSYVDGSSAYT-TNNKQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALEL 143 (414)
T ss_pred ccEEEecCCCcCceeeecCccccc-ccHHHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhH
Confidence 345788877 44322111111222 47899999999999876 335689999999999999998753
No 268
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=31.21 E-value=44 Score=33.65 Aligned_cols=52 Identities=17% Similarity=0.159 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcE-EEEEEcHHH-HHHH
Q psy5044 150 VYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSV-IGLGVGAGG-NILA 206 (219)
Q Consensus 150 vIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~-~lvG~SmGG-~IAl 206 (219)
|..+|.||+--|......+ .+...|..+.++. ..-+.++ +++|-|+|| ++++
T Consensus 405 v~l~D~pGf~~G~~~E~~G----~~~~~a~l~~A~a-~~~VP~isvi~g~a~G~g~~aM 458 (569)
T PLN02820 405 LFLQNITGFMVGSRSEASG----IAKAGAKMVMAVA-CAKVPKITIIVGGSFGAGNYGM 458 (569)
T ss_pred EEEEECCCCCCCHHHHHhh----HHHHHHHHHHHHH-hCCCCEEEEEECCcchHHHHHh
Confidence 4788999995332211111 2333333333322 3446665 566999985 5555
No 269
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=31.16 E-value=39 Score=28.58 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=20.7
Q ss_pred HHHHHhhhCCCcEEEEEEcHHHHHHHHH
Q psy5044 181 LLFVLSYFGLHSVIGLGVGAGGNILARF 208 (219)
Q Consensus 181 L~~lLd~LgI~~~~lvG~SmGG~IAl~f 208 (219)
+.++++... +..+++|.|+|+++....
T Consensus 104 ~~~i~~~~~-~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 104 LDAILKRVA-RGVVIGGTSAGAAVMGET 130 (210)
T ss_pred HHHHHHHHH-cCCeEEEcCHHHHHhhhc
Confidence 344555555 678999999999999886
No 270
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=30.79 E-value=23 Score=28.55 Aligned_cols=13 Identities=38% Similarity=0.524 Sum_probs=11.5
Q ss_pred EEEEEEcHHHHHH
Q psy5044 193 VIGLGVGAGGNIL 205 (219)
Q Consensus 193 ~~lvG~SmGG~IA 205 (219)
.+++|.|+|++|+
T Consensus 70 ~vi~G~SAGA~i~ 82 (154)
T PF03575_consen 70 GVIIGTSAGAMIL 82 (154)
T ss_dssp SEEEEETHHHHCT
T ss_pred CEEEEEChHHhhc
Confidence 7888999999985
No 271
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=29.97 E-value=77 Score=31.08 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=13.5
Q ss_pred CCCCEEEEeCCCCCChh
Q psy5044 46 RGKPAILTYHDLGLNYI 62 (219)
Q Consensus 46 ~~~p~il~~Hd~G~n~~ 62 (219)
.++|+.|.-|+-|.+-+
T Consensus 176 ~GrpV~VIandkg~~~k 192 (431)
T PLN03230 176 EGMSFMFIGHQKGRNTK 192 (431)
T ss_pred CCEEEEEEEeccCcccc
Confidence 46899999999886643
No 272
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=29.72 E-value=52 Score=29.33 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=19.2
Q ss_pred CcEEEEEEcHHHHHHHHHHHhCc
Q psy5044 191 HSVIGLGVGAGGNILARFALSHL 213 (219)
Q Consensus 191 ~~~~lvG~SmGG~IAl~fA~~~P 213 (219)
+.-.++|.|+|+.+|..||...+
T Consensus 32 ~~~~i~GtSAGAl~aa~~asg~~ 54 (252)
T cd07221 32 DARMFFGASAGALHCVTFLSGLP 54 (252)
T ss_pred cCCEEEEEcHHHHHHHHHHhCCC
Confidence 34568899999999999998665
No 273
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=29.37 E-value=76 Score=24.68 Aligned_cols=44 Identities=16% Similarity=0.068 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEEEcHHH--HHHHHHHHhCcCcccC
Q psy5044 175 DELSNQLLFVLSYFGLHSVIGLGVGAGG--NILARFALSHLWYCSL 218 (219)
Q Consensus 175 d~lA~dL~~lLd~LgI~~~~lvG~SmGG--~IAl~fA~~~P~RV~~ 218 (219)
+.=-+.|.++++.+-=.+++++|=|=-. -|-..+|.+||+||.+
T Consensus 49 ~~K~~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~~P~~i~a 94 (100)
T PF09949_consen 49 EHKRDNIERILRDFPERKFILIGDSGQHDPEIYAEIARRFPGRILA 94 (100)
T ss_pred hHHHHHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHHHCCCCEEE
Confidence 3455678888888888999999998443 4666789999999976
No 274
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=29.09 E-value=1.1e+02 Score=25.93 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=33.7
Q ss_pred hhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHH
Q psy5044 141 MRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAG 201 (219)
Q Consensus 141 ~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmG 201 (219)
+..|....+||+.|.+|=-. |=+++|+.+..+-+. |-+=+.++|=|.|
T Consensus 61 l~~i~~~~~vi~Ld~~Gk~~------------sSe~fA~~l~~~~~~-G~~i~f~IGG~~G 108 (155)
T COG1576 61 LAAIPKGSYVVLLDIRGKAL------------SSEEFADFLERLRDD-GRDISFLIGGADG 108 (155)
T ss_pred HHhcCCCCeEEEEecCCCcC------------ChHHHHHHHHHHHhc-CCeEEEEEeCccc
Confidence 34588888999999997621 347888887775444 4333567788877
No 275
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=28.74 E-value=1.6e+02 Score=24.77 Aligned_cols=114 Identities=12% Similarity=0.100 Sum_probs=67.7
Q ss_pred EecCCCCCCCCCCc--ccccccchhhHHHHHHhcCccccccCCCC-----Cccc------hhhhh--chhhhhh-hhcCc
Q psy5044 85 HVNAPGQEEGAQPL--ADDVTQHPLALLMIIRHYGMDICYDTDHT-----NISN------FQAFF--NFSDMRS-LLENF 148 (219)
Q Consensus 85 hv~~pG~~~~a~~l--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~------f~~~~--nw~~~~~-L~~~~ 148 (219)
.+.-...+++.|+. ...+...-..+++.++++|++.++|.-.. +... .+..| -|..++. ++.+.
T Consensus 41 ~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~ 120 (281)
T PF00150_consen 41 PVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNP 120 (281)
T ss_dssp EEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccccccchhhHHHHHhhhhhhccccCCCC
Confidence 44444555445543 33345567889999999999999987663 1111 12233 2677774 66777
Q ss_pred eEEEEcCC----CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcH
Q psy5044 149 SVYHVNAP----GQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGA 200 (219)
Q Consensus 149 rvIavDlp----GHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~Sm 200 (219)
.++.+|+- +.+.. ...+.. ....+.+++..+.+.+.+.+-+..+++|-+.
T Consensus 121 ~v~~~el~NEP~~~~~~-~~w~~~-~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~ 174 (281)
T PF00150_consen 121 PVVGWELWNEPNGGNDD-ANWNAQ-NPADWQDWYQRAIDAIRAADPNHLIIVGGGG 174 (281)
T ss_dssp TTEEEESSSSGCSTTST-TTTSHH-HTHHHHHHHHHHHHHHHHTTSSSEEEEEEHH
T ss_pred cEEEEEecCCccccCCc-cccccc-cchhhhhHHHHHHHHHHhcCCcceeecCCCc
Confidence 88999972 22111 001000 0124577888888888888988877777743
No 276
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=28.67 E-value=3.3e+02 Score=24.37 Aligned_cols=106 Identities=7% Similarity=-0.007 Sum_probs=63.4
Q ss_pred CCCCEEEEeCCCCCChh--hhhhcccChhhHHH--------hh-c-cceEEEecCCCCCCCCCCcccccccchhhHHHHH
Q psy5044 46 RGKPAILTYHDLGLNYI--SNFQAFFNFSDMRS--------LL-E-NFSVYHVNAPGQEEGAQPLADDVTQHPLALLMII 113 (219)
Q Consensus 46 ~~~p~il~~Hd~G~n~~--~~~~~~~~~~~~~~--------l~-~-~~~v~hv~~pG~~~~a~~l~~~~~~~~~~~~~v~ 113 (219)
.+.|++.+++.++...- ..|..++.+|..++ +. + .|.=+.+|-+.. .+.=-+.|+.+-+.+-.-+
T Consensus 58 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~---~~~d~~~~~~fl~eL~~~l 134 (298)
T cd06549 58 AHPKVLPLVQNISGGAWDGKNIARLLADPSARAKFIANIAAYLERNQADGIVLDFEEL---PADDLPKYVAFLSELRRRL 134 (298)
T ss_pred cCCceeEEEEecCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCC---ChhHHHHHHHHHHHHHHHh
Confidence 45688888887764321 12455666665443 11 2 245456665532 1111233666666666677
Q ss_pred HhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCC
Q psy5044 114 RHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQE 159 (219)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG 159 (219)
++.|....+..-... . .|+.+.+....+.+.+-++|..|.+
T Consensus 135 ~~~~~~lsv~v~~~~-~----~~d~~~l~~~~D~v~lMtYD~~~~~ 175 (298)
T cd06549 135 PAQGKQLTVTVPADE-A----DWNLKALARNADKLILMAYDEHYQG 175 (298)
T ss_pred hhcCcEEEEEecCCC-C----CCCHHHHHHhCCEEEEEEeccCCCC
Confidence 776666666544332 2 3677888888899999999998754
No 277
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=28.35 E-value=40 Score=28.56 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=36.9
Q ss_pred hchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHH
Q psy5044 136 FNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAG 201 (219)
Q Consensus 136 ~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmG 201 (219)
|-|+++..+++-. |++|.+|+|.| ..|.+.+.+.-+.+||+++.++=-+..
T Consensus 60 ~~~~~~gE~~~la--V~pd~r~~G~G-------------~~Ll~~~~~~Ar~~gi~~lf~LTt~~~ 110 (153)
T COG1246 60 VLEEDLGELRSLA--VHPDYRGSGRG-------------ERLLERLLADARELGIKELFVLTTRSP 110 (153)
T ss_pred cCccCeeeEEEEE--ECHHhcCCCcH-------------HHHHHHHHHHHHHcCCceeeeeecccH
Confidence 3477777665544 77788988754 667777888889999999988764333
No 278
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=28.26 E-value=69 Score=26.71 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=33.5
Q ss_pred hhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHH
Q psy5044 143 SLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAG 201 (219)
Q Consensus 143 ~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmG 201 (219)
.+.++..+|+.|..|.-- |=+++|++|.++.+.-.-+=+.++|=|.|
T Consensus 63 ~i~~~~~~i~Ld~~Gk~~------------sS~~fA~~l~~~~~~g~~~i~F~IGG~~G 109 (155)
T PF02590_consen 63 KIPPNDYVILLDERGKQL------------SSEEFAKKLERWMNQGKSDIVFIIGGADG 109 (155)
T ss_dssp TSHTTSEEEEE-TTSEE--------------HHHHHHHHHHHHHTTS-EEEEEE-BTTB
T ss_pred hccCCCEEEEEcCCCccC------------ChHHHHHHHHHHHhcCCceEEEEEecCCC
Confidence 367788899999998821 45899999999888733355778898887
No 279
>PF03373 Octapeptide: Octapeptide repeat; InterPro: IPR005038 This octapeptide repeat is found in several bacterial proteins. The function of this repeat is unknown.; GO: 0019865 immunoglobulin binding
Probab=28.17 E-value=28 Score=15.92 Aligned_cols=6 Identities=50% Similarity=1.243 Sum_probs=4.6
Q ss_pred CCCCCC
Q psy5044 89 PGQEEG 94 (219)
Q Consensus 89 pG~~~~ 94 (219)
||.|||
T Consensus 1 PgkeDn 6 (8)
T PF03373_consen 1 PGKEDN 6 (8)
T ss_pred Cccccc
Confidence 778876
No 280
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=28.14 E-value=22 Score=33.95 Aligned_cols=52 Identities=17% Similarity=0.097 Sum_probs=32.9
Q ss_pred hHHHHHHhcCccccccCCCCC-ccchhhhhch-----hh----------hh----hhhcCceEEEEcCCCCC
Q psy5044 108 ALLMIIRHYGMDICYDTDHTN-ISNFQAFFNF-----SD----------MR----SLLENFSVYHVNAPGQE 159 (219)
Q Consensus 108 ~~~~v~~~~~~~~~~~~~~~~-~~~f~~~~nw-----~~----------~~----~L~~~~rvIavDlpGHG 159 (219)
..++-++...++|++-+..++ ||.|+|++-= +. +. +-.....|+.+|+||.|
T Consensus 26 ~~l~~~~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~g 97 (376)
T PF05049_consen 26 EALKDIDNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIG 97 (376)
T ss_dssp HHHHHHHH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GG
T ss_pred HHHHHhhcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCC
Confidence 444556778999999999998 9999998831 11 22 12223468999999996
No 281
>PRK13938 phosphoheptose isomerase; Provisional
Probab=26.88 E-value=1.7e+02 Score=25.18 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCc
Q psy5044 173 TMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHL 213 (219)
Q Consensus 173 Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P 213 (219)
.++++|+.+.+.+.. -++++++|++-.|.+|..|+.+..
T Consensus 30 ~~~~~a~~~~~~l~~--g~rI~i~G~G~S~~~A~~fa~~L~ 68 (196)
T PRK13938 30 AARAIGDRLIAGYRA--GARVFMCGNGGSAADAQHFAAELT 68 (196)
T ss_pred HHHHHHHHHHHHHHC--CCEEEEEeCcHHHHHHHHHHHHcC
Confidence 355666665555543 379999999999999999998875
No 282
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=26.84 E-value=98 Score=27.03 Aligned_cols=38 Identities=32% Similarity=0.370 Sum_probs=25.6
Q ss_pred CCceeEEEEeCCccEE-EEEecC-CCCCEEE-EeCCCCCCh
Q psy5044 24 PTVEEVYVETDRGSIL-VAVAGN-RGKPAIL-TYHDLGLNY 61 (219)
Q Consensus 24 ~~~~e~~i~t~~g~~~-v~~~G~-~~~p~il-~~Hd~G~n~ 61 (219)
.+..+..++||.|.+. -...|. +++|+++ ..|++|-.+
T Consensus 17 ~~~~~~~~~tp~g~~~~~~~~G~~~g~~vv~~~~~G~g~~~ 57 (241)
T TIGR01694 17 KDVEEVNVDTPYGNPSAPIVVGRVAGVDVAFLPRHGRGHDI 57 (241)
T ss_pred ccceEEEEECCCCCCCCCEEEEEECCEEEEEEeCCCCCCcc
Confidence 4678889999999542 223342 4567776 789999644
No 283
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=25.98 E-value=95 Score=27.52 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=22.6
Q ss_pred ceeEEEEeCCccEEEEEec-CCCCCEE-EEeCCCCC
Q psy5044 26 VEEVYVETDRGSILVAVAG-NRGKPAI-LTYHDLGL 59 (219)
Q Consensus 26 ~~e~~i~t~~g~~~v~~~G-~~~~p~i-l~~Hd~G~ 59 (219)
+++..++|+.|.+. .+.| -+++|++ +..|++|-
T Consensus 21 ~~~~~~~~~~g~~~-~~~G~~~g~~Vv~l~~~G~gh 55 (261)
T PRK08666 21 IREETVETPYGEVK-VKIGTYAGEEVAFLARHGEGH 55 (261)
T ss_pred cccceeEeeCCCCE-EEEEEECCEEEEEEeCCCCCC
Confidence 34677889988654 3356 2466776 67799993
No 284
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=25.58 E-value=1.6e+02 Score=24.64 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=24.9
Q ss_pred eEEEEcCCCCCCCCCCCCC--CCC--CCCHHHHHHHHHHHHhhhCCCcE
Q psy5044 149 SVYHVNAPGQEEGAQPLAD--DYI--YPTMDELSNQLLFVLSYFGLHSV 193 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~~~--~~~--~~Smd~lA~dL~~lLd~LgI~~~ 193 (219)
++|.+| ||||+..+.... +.. .. .-++|..|.+.|++.|++-+
T Consensus 1 k~I~iD-pGHGg~d~GA~~~~g~~E~~~-~l~ia~~l~~~L~~~G~~V~ 47 (189)
T TIGR02883 1 KIIVID-PGHGGIDGGAVGKDGTLEKDI-TLEIALKLKDYLQEQGALVV 47 (189)
T ss_pred CEEEEe-CCCCCCCCCCCCCCCccHHHH-HHHHHHHHHHHHHhCCCEEE
Confidence 357777 799865432111 100 01 22677888888988887543
No 285
>PF06755 DUF1219: Protein of unknown function (DUF1219); InterPro: IPR009610 This family consists of several hypothetical proteins which seem to be specific to the enterobacteria Escherichia coli and Shigella flexneri. Family members are often known as YeeV proteins and are around 125 residues in length. The function of this family is unknown.
Probab=25.55 E-value=89 Score=25.36 Aligned_cols=60 Identities=18% Similarity=0.337 Sum_probs=42.8
Q ss_pred cccccccchhhHHHHHH-hcCccccccCCCCCccchhhhhchh-----hhhhhhcCceEEEEcCCCC
Q psy5044 98 LADDVTQHPLALLMIIR-HYGMDICYDTDHTNISNFQAFFNFS-----DMRSLLENFSVYHVNAPGQ 158 (219)
Q Consensus 98 l~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~f~~~~nw~-----~~~~L~~~~rvIavDlpGH 158 (219)
.|.-|.-|-.-+-.+|+ +||+. .+|+.+++.++-+..+.-. .+-.|-++|..+++|.+|+
T Consensus 15 ~~spV~vWQ~llt~LL~~HYGLt-LNDT~f~de~vI~~hidaGIs~~~AVN~LVeKY~LvRiD~~gF 80 (114)
T PF06755_consen 15 CPSPVEVWQQLLTYLLEQHYGLT-LNDTPFSDETVIQEHIDAGISPADAVNFLVEKYELVRIDRNGF 80 (114)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCc-cCCCccchHHHHHHHHHhCCCHHHHHHHHHHHHhhhhcCCccc
Confidence 34444445455556666 88886 7999999887777665532 2225899999999999999
No 286
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=25.43 E-value=1.9e+02 Score=23.13 Aligned_cols=51 Identities=22% Similarity=0.400 Sum_probs=35.6
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEc-HHHHHHHHHHHh
Q psy5044 149 SVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVG-AGGNILARFALS 211 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~S-mGG~IAl~fA~~ 211 (219)
+|+.++.+... .| +.+.+++.|.+++++.+.+ .+++|+| .|.-++-++|.+
T Consensus 61 ~v~~~~~~~~~----------~~-~~~~~a~~l~~~~~~~~~~-lVl~~~t~~g~~la~~lA~~ 112 (164)
T PF01012_consen 61 KVYHIDDPALA----------EY-DPEAYADALAELIKEEGPD-LVLFGSTSFGRDLAPRLAAR 112 (164)
T ss_dssp EEEEEE-GGGT----------TC--HHHHHHHHHHHHHHHT-S-EEEEESSHHHHHHHHHHHHH
T ss_pred EEEEecCcccc----------cc-CHHHHHHHHHHHHHhcCCC-EEEEcCcCCCCcHHHHHHHH
Confidence 77888877552 12 6789999999999998877 6666665 566677777765
No 287
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=25.39 E-value=3.7e+02 Score=25.31 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=48.8
Q ss_pred hhhHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy5044 106 PLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVL 185 (219)
Q Consensus 106 ~~~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lL 185 (219)
++-+-+||++++.-.-.-..|++.|.||.+. .+...++.+|.|=.= +..-| + .-+-|.+|+..++
T Consensus 205 ~~il~~il~~~~~~~~~GiVHGDlSefNIlV--------~~dg~~~vIDwPQ~v--~~~hp-~----a~e~l~RDv~nii 269 (304)
T COG0478 205 DEILDKILEEVRKAYRRGIVHGDLSEFNILV--------TEDGDIVVIDWPQAV--PISHP-D----AEELLERDVENII 269 (304)
T ss_pred HHHHHHHHHHHHHHHHcCccccCCchheEEE--------ecCCCEEEEeCcccc--cCCCC-C----HHHHHHhHHHHHH
Confidence 4556667777777776777899999999875 346677889988441 11111 1 4577889999999
Q ss_pred hhhC
Q psy5044 186 SYFG 189 (219)
Q Consensus 186 d~Lg 189 (219)
.+|.
T Consensus 270 ~yFr 273 (304)
T COG0478 270 KYFR 273 (304)
T ss_pred HHHH
Confidence 8874
No 288
>KOG3847|consensus
Probab=24.86 E-value=28 Score=33.42 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=29.7
Q ss_pred CCCCEEEEeCCCCCChhhhhhcccChhhHHHhhcc-ceEEEecCCCCCCCCCCc
Q psy5044 46 RGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLEN-FSVYHVNAPGQEEGAQPL 98 (219)
Q Consensus 46 ~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~-~~v~hv~~pG~~~~a~~l 98 (219)
++-|++|+.|++|..++. +.++ ++ +|+.| |.| -|+-|.|+.+.-
T Consensus 116 ~k~PvvvFSHGLggsRt~-YSa~----c~-~LAShG~VV---aavEHRD~SA~~ 160 (399)
T KOG3847|consen 116 DKYPVVVFSHGLGGSRTL-YSAY----CT-SLASHGFVV---AAVEHRDRSACW 160 (399)
T ss_pred CCccEEEEecccccchhh-HHHH----hh-hHhhCceEE---EEeecccCccee
Confidence 467999999999998653 4433 33 44444 554 677777777764
No 289
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=24.36 E-value=1.1e+02 Score=24.31 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=28.3
Q ss_pred CCCCCEEEEeC-CCCCChhhhhhcccChhhHHHh-hccceEEEecCC
Q psy5044 45 NRGKPAILTYH-DLGLNYISNFQAFFNFSDMRSL-LENFSVYHVNAP 89 (219)
Q Consensus 45 ~~~~p~il~~H-d~G~n~~~~~~~~~~~~~~~~l-~~~~~v~hv~~p 89 (219)
+.+||++|.++ ++-..++..-..-|.+|++.+. .++|.+++||+.
T Consensus 13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~ 59 (124)
T cd02955 13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDRE 59 (124)
T ss_pred HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCC
Confidence 35788888543 3333333311235677777775 578999999874
No 290
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=24.32 E-value=57 Score=28.36 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=16.2
Q ss_pred EEEEEcHHHHHHHHHHHh
Q psy5044 194 IGLGVGAGGNILARFALS 211 (219)
Q Consensus 194 ~lvG~SmGG~IAl~fA~~ 211 (219)
.++|-|.||.||+.++..
T Consensus 37 ~i~GtS~G~iia~~l~~~ 54 (258)
T cd07199 37 LIAGTSTGGIIALGLALG 54 (258)
T ss_pred eeeeccHHHHHHHHHhcC
Confidence 478999999999999976
No 291
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=24.23 E-value=1.9e+02 Score=23.65 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=36.5
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEc-HHHHHHHHHHHhC
Q psy5044 149 SVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVG-AGGNILARFALSH 212 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~S-mGG~IAl~fA~~~ 212 (219)
+++.++.+... . ++.+.+++.|.+++++.+ -..+++|+| .|+.++-++|.+-
T Consensus 62 ~v~~~~~~~~~----------~-~~~~~~a~~l~~~i~~~~-p~~Vl~g~t~~g~~la~rlA~~L 114 (181)
T cd01985 62 KVLLVEDPALA----------G-YDPEATAKALAALIKKEK-PDLILAGATSIGKQLAPRVAALL 114 (181)
T ss_pred EEEEEecCccc----------C-CChHHHHHHHHHHHHHhC-CCEEEECCcccccCHHHHHHHHh
Confidence 77888766441 1 256899999999999988 456666664 5666777777653
No 292
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=23.95 E-value=33 Score=33.46 Aligned_cols=61 Identities=11% Similarity=0.217 Sum_probs=33.5
Q ss_pred hHHHHHHhcCccccccCCCCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q psy5044 108 ALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSY 187 (219)
Q Consensus 108 ~~~~v~~~~~~~~~~~~~~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~ 187 (219)
-.+.+|++|+++++ ..+|.||+--|......+ .+...|+.+.++-+.
T Consensus 320 rfi~lcd~~~iPlv-----------------------------~l~dtpGf~~g~~~E~~g----~~~~ga~~~~a~~~~ 366 (493)
T PF01039_consen 320 RFIRLCDAFNIPLV-----------------------------TLVDTPGFMPGPEAERAG----IIRAGARLLYALAEA 366 (493)
T ss_dssp HHHHHHHHTT--EE-----------------------------EEEEECEB--SHHHHHTT----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCceE-----------------------------EEeecccccccchhhhcc----hHHHHHHHHHHHHcC
Confidence 45678999999954 778999994332221111 345555555554444
Q ss_pred hCCCcE-EEEEEcHHH
Q psy5044 188 FGLHSV-IGLGVGAGG 202 (219)
Q Consensus 188 LgI~~~-~lvG~SmGG 202 (219)
.+.++ +++|-+.||
T Consensus 367 -~vP~itvi~~~~~Gg 381 (493)
T PF01039_consen 367 -TVPKITVIVRKAYGG 381 (493)
T ss_dssp --S-EEEEEEEEEEHH
T ss_pred -CCCEEEEEeCCccCc
Confidence 55555 456888875
No 293
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=23.73 E-value=1.6e+02 Score=23.89 Aligned_cols=52 Identities=17% Similarity=0.100 Sum_probs=36.1
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEc-HHHHHHHHHHHhC
Q psy5044 149 SVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVG-AGGNILARFALSH 212 (219)
Q Consensus 149 rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~S-mGG~IAl~fA~~~ 212 (219)
+++.+|.+... .++.+.+++.|.+++++.+ -..+++|+| .|.-++-++|.+-
T Consensus 54 ~v~~~~~~~~~-----------~~~~~~~a~al~~~i~~~~-p~~Vl~~~t~~g~~la~rlAa~L 106 (168)
T cd01715 54 KVLVAEDPALA-----------HYLAEPYAPALVALAKKEK-PSHILAGATSFGKDLAPRVAAKL 106 (168)
T ss_pred EEEEecChhhc-----------ccChHHHHHHHHHHHHhcC-CCEEEECCCccccchHHHHHHHh
Confidence 67777655431 1256899999999999888 466777765 4556777777654
No 294
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=23.40 E-value=1.3e+02 Score=28.29 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=13.1
Q ss_pred CCCCEEEEeCCCCCChh
Q psy5044 46 RGKPAILTYHDLGLNYI 62 (219)
Q Consensus 46 ~~~p~il~~Hd~G~n~~ 62 (219)
+++|+.|.-|+-|.+-+
T Consensus 106 ~GrpV~VIa~d~g~~~~ 122 (316)
T TIGR00513 106 DGRPVVVIGHQKGRDTK 122 (316)
T ss_pred CCEEEEEEEecCCcccc
Confidence 46899999999885533
No 295
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=23.39 E-value=89 Score=28.50 Aligned_cols=112 Identities=13% Similarity=-0.032 Sum_probs=63.7
Q ss_pred cccchhhHHHHHHhcCccccccCC----------CCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCC--CCCCC-
Q psy5044 102 VTQHPLALLMIIRHYGMDICYDTD----------HTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQ--PLADD- 168 (219)
Q Consensus 102 ~~~~~~~~~~v~~~~~~~~~~~~~----------~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s--~~~~~- 168 (219)
...+-+++-.+.+.+++++-+.-. .++-|||+++.+--.--.+.....++.-|.|+-+.-+. .+|--
T Consensus 63 ~~~L~~~L~~l~~~l~l~i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~ 142 (286)
T PRK13011 63 EDALRAGFAPIAARFGMQWELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHH 142 (286)
T ss_pred HHHHHHHHHHHHHHhCcEEEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEE
Confidence 455677888888888888776644 34789999988432222232222223234443321100 11100
Q ss_pred --CCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcCc
Q psy5044 169 --YIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLWY 215 (219)
Q Consensus 169 --~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~R 215 (219)
....+..+..+.+.++|++++.+-++++|+ +-.+.-.+-..+|.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy--~~il~~~~l~~~~~~ 189 (286)
T PRK13011 143 FPITPDTKPQQEAQVLDVVEESGAELVVLARY--MQVLSPELCRKLAGR 189 (286)
T ss_pred eCCCcCchhhhHHHHHHHHHHhCcCEEEEeCh--hhhCCHHHHhhccCC
Confidence 000134556667888999999998888765 455555555555544
No 296
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.62 E-value=91 Score=28.35 Aligned_cols=112 Identities=9% Similarity=-0.035 Sum_probs=63.7
Q ss_pred ccccchhhHHHHHHhcCccccccCC----------CCCccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCC--CCCCC
Q psy5044 101 DVTQHPLALLMIIRHYGMDICYDTD----------HTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQ--PLADD 168 (219)
Q Consensus 101 ~~~~~~~~~~~v~~~~~~~~~~~~~----------~~~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s--~~~~~ 168 (219)
+...+-+++-.+.+.+++++-++-. .++-|||+++.+--.-..|.....++.-|.+.-+.-+. .+|--
T Consensus 62 ~~~~L~~~L~~l~~~l~l~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~ 141 (286)
T PRK06027 62 NLETLRADFAALAEEFEMDWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFH 141 (286)
T ss_pred CHHHHHHHHHHHHHHhCCEEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEE
Confidence 3566778888899999998876665 45889999998543222233333333334443221110 11100
Q ss_pred C---CCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCcC
Q psy5044 169 Y---IYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLW 214 (219)
Q Consensus 169 ~---~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P~ 214 (219)
+ ...+.++.-..+.++|++++.+-++++|+. -.+.-.+-..+|.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~--~il~~~~l~~~~~ 188 (286)
T PRK06027 142 HVPVTKETKAEAEARLLELIDEYQPDLVVLARYM--QILSPDFVARFPG 188 (286)
T ss_pred EeccCccccchhHHHHHHHHHHhCCCEEEEecch--hhcCHHHHhhccC
Confidence 0 001344556678888999999989998864 2333344444443
No 297
>PRK13936 phosphoheptose isomerase; Provisional
Probab=22.47 E-value=2.3e+02 Score=23.88 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHhCc
Q psy5044 174 MDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHL 213 (219)
Q Consensus 174 md~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~~P 213 (219)
+++.++.+.+.+. +-+++.++|.+-.+.+|..++.+..
T Consensus 29 i~~a~~~~~~~l~--~a~~I~i~G~G~S~~~A~~~~~~l~ 66 (197)
T PRK13936 29 IAQAVELMVQALL--NEGKILACGNGGSAADAQHFSAELL 66 (197)
T ss_pred HHHHHHHHHHHHH--CCCEEEEEeCcHhHHHHHHHHHHcc
Confidence 4566666666653 3578999999999999999997654
No 298
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=22.31 E-value=4.5e+02 Score=24.07 Aligned_cols=80 Identities=16% Similarity=0.224 Sum_probs=40.4
Q ss_pred hHHHHHHhcCccccccCCCCCcc----------chhhhhch--hhhh-hhhcCce--EEEEcCCCCCCCCCCCCCCCCCC
Q psy5044 108 ALLMIIRHYGMDICYDTDHTNIS----------NFQAFFNF--SDMR-SLLENFS--VYHVNAPGQEEGAQPLADDYIYP 172 (219)
Q Consensus 108 ~~~~v~~~~~~~~~~~~~~~~~~----------~f~~~~nw--~~~~-~L~~~~r--vIavDlpGHG~s~s~~~~~~~~~ 172 (219)
.|.+++..||...|+--..++.. -.....+| +.++ .+..... =|.+|. |.|-+.+
T Consensus 124 ~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDP-GiGF~k~--------- 193 (282)
T PRK11613 124 GALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDP-GFGFGKN--------- 193 (282)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeC-CCCcCCC---------
Confidence 56788888888888854332211 22222233 2222 2333331 366686 7765432
Q ss_pred CHHHHHHHHHHHHhhh-CCCcEEEEEEc
Q psy5044 173 TMDELSNQLLFVLSYF-GLHSVIGLGVG 199 (219)
Q Consensus 173 Smd~lA~dL~~lLd~L-gI~~~~lvG~S 199 (219)
.++- -.+.+-|+.| .++..+++|+|
T Consensus 194 -~~~n-~~ll~~l~~l~~lg~Pilvg~S 219 (282)
T PRK11613 194 -LSHN-YQLLARLAEFHHFNLPLLVGMS 219 (282)
T ss_pred -HHHH-HHHHHHHHHHHhCCCCEEEEec
Confidence 2211 1222223333 25678999999
No 299
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=22.07 E-value=4e+02 Score=25.40 Aligned_cols=82 Identities=7% Similarity=-0.060 Sum_probs=49.7
Q ss_pred CccchhhhhchhhhhhhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh---hCCCcEEEEEE------
Q psy5044 128 NISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSY---FGLHSVIGLGV------ 198 (219)
Q Consensus 128 ~~~~f~~~~nw~~~~~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~---LgI~~~~lvG~------ 198 (219)
|..-+.+-...+.|..|++.--.+..-.+|.=-+. ....+ +.++.+++.+.+.+.+.. +.-+++.+-|-
T Consensus 122 n~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~ac~-~~g~g-~~~~~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~i 199 (390)
T TIGR00521 122 NENMYNNPAVQENIKRLKDDGYIFIEPDSGLLACG-DEGKG-RLAEPETIVKAAEREFSPKEDLEGKRVLITAGPTREPI 199 (390)
T ss_pred ChhhcCCHHHHHHHHHHHHCCcEEECCCCcccccc-cccCC-CCCCHHHHHHHHHHHHhhccccCCceEEEecCCccCCC
Confidence 33344444555666667665444555556662111 12223 356889999999988855 44456666665
Q ss_pred ------------cHHHHHHHHHHHh
Q psy5044 199 ------------GAGGNILARFALS 211 (219)
Q Consensus 199 ------------SmGG~IAl~fA~~ 211 (219)
.||..+|.+++.+
T Consensus 200 D~VR~itN~SSG~~g~~~a~~~~~~ 224 (390)
T TIGR00521 200 DPVRFISNLSSGKMGLALAEAAYKR 224 (390)
T ss_pred CceeeecCCCcchHHHHHHHHHHHC
Confidence 4888898888764
No 300
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=21.87 E-value=1.6e+02 Score=24.01 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=31.3
Q ss_pred CCCCCEEEEeCCCC-CChhhhhhcccChhhHHHhh-ccceEEEecCCCCC
Q psy5044 45 NRGKPAILTYHDLG-LNYISNFQAFFNFSDMRSLL-ENFSVYHVNAPGQE 92 (219)
Q Consensus 45 ~~~~p~il~~Hd~G-~n~~~~~~~~~~~~~~~~l~-~~~~v~hv~~pG~~ 92 (219)
+.+||++|.+|.=. ..++..-..+|.+|+++++. ++|.++++++.+-+
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td 70 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTD 70 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCC
Confidence 46788777765422 22222122478899999977 58988888876553
No 301
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=21.75 E-value=1.7e+02 Score=24.40 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=32.1
Q ss_pred hhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHH
Q psy5044 143 SLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAG 201 (219)
Q Consensus 143 ~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmG 201 (219)
.|...-.+|+.|.+|--- |=+++|+.|.+..+.-.-+=+.++|=+.|
T Consensus 63 ~l~~~~~~i~LDe~Gk~~------------sS~~fA~~l~~~~~~g~~~i~F~IGGa~G 109 (157)
T PRK00103 63 ALPKGARVIALDERGKQL------------SSEEFAQELERWRDDGRSDVAFVIGGADG 109 (157)
T ss_pred hCCCCCEEEEEcCCCCcC------------CHHHHHHHHHHHHhcCCccEEEEEcCccc
Confidence 355566799999998721 34889999988744422245667787666
No 302
>PRK12467 peptide synthase; Provisional
Probab=21.69 E-value=2.8e+02 Score=34.05 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=49.3
Q ss_pred hhhhchhhhhh-hhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhC-CCcEEEEEEcHHHHHHHHHHH
Q psy5044 133 QAFFNFSDMRS-LLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFG-LHSVIGLGVGAGGNILARFAL 210 (219)
Q Consensus 133 ~~~~nw~~~~~-L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~Lg-I~~~~lvG~SmGG~IAl~fA~ 210 (219)
-+.|.+..++. |.....++.+..++.-... . ...++++++..-.+.+.... -.+..+.|+|+||.++.++|.
T Consensus 3703 r~~~~~~~l~~~l~~~~~~~~l~~~~~~~d~--~----~~~~~~~~~~~y~~~~~~~~~~~p~~l~g~s~g~~~a~~~~~ 3776 (3956)
T PRK12467 3703 GTVFDYEPLAVILEGDRHVLGLTCRHLLDDG--W----QDTSLQAMAVQYADYILWQQAKGPYGLLGWSLGGTLARLVAE 3776 (3956)
T ss_pred cchhhhHHHHHHhCCCCcEEEEecccccccc--C----CccchHHHHHHHHHHHHHhccCCCeeeeeeecchHHHHHHHH
Confidence 34445555664 6667788888887763211 1 23478887777776665544 357899999999999988876
Q ss_pred h
Q psy5044 211 S 211 (219)
Q Consensus 211 ~ 211 (219)
.
T Consensus 3777 ~ 3777 (3956)
T PRK12467 3777 L 3777 (3956)
T ss_pred H
Confidence 3
No 303
>KOG1532|consensus
Probab=20.99 E-value=1e+02 Score=29.30 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=23.2
Q ss_pred ecCCCCCEEEEeCCCCCChhhhhhcccChhhHHHhhccc
Q psy5044 43 AGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENF 81 (219)
Q Consensus 43 ~G~~~~p~il~~Hd~G~n~~~~~~~~~~~~~~~~l~~~~ 81 (219)
.|..++|+++++=|...+.++.| |++|..|.
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF--------~QrL~~hl 43 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTF--------MQRLNSHL 43 (366)
T ss_pred cccccCCcEEEEEecCCCCchhH--------HHHHHHHH
Confidence 45678899999988888888766 66666553
No 304
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=20.89 E-value=1.6e+02 Score=24.48 Aligned_cols=46 Identities=17% Similarity=0.106 Sum_probs=32.1
Q ss_pred hhhcCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHH
Q psy5044 143 SLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGG 202 (219)
Q Consensus 143 ~L~~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG 202 (219)
.+. .-.+|+.|.+|--- |=.++|+.|.++.+.-. +-+.++|=+.|=
T Consensus 62 ~~~-~~~~i~LDe~Gk~~------------sS~~fA~~l~~~~~~g~-~i~FvIGGa~G~ 107 (153)
T TIGR00246 62 AIG-KAHVVTLDIPGKPW------------TTPQLADTLEKWKTDGR-DVTLLIGGPEGL 107 (153)
T ss_pred hCC-CCeEEEEcCCCCcC------------CHHHHHHHHHHHhccCC-eEEEEEcCCCcC
Confidence 455 35789999998721 44889999999865543 456677877663
No 305
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=20.77 E-value=82 Score=26.91 Aligned_cols=27 Identities=26% Similarity=0.151 Sum_probs=18.6
Q ss_pred HHHHHhhhCCCcEEEEEEcHHHHHHHH
Q psy5044 181 LLFVLSYFGLHSVIGLGVGAGGNILAR 207 (219)
Q Consensus 181 L~~lLd~LgI~~~~lvG~SmGG~IAl~ 207 (219)
+.++|+..--+...++|.|+|++++..
T Consensus 103 l~~~l~~~~~~g~~i~G~SAGa~i~~~ 129 (212)
T cd03146 103 LDAILKAALERGVVYIGWSAGSNCWFP 129 (212)
T ss_pred HHHHHHHHHHCCCEEEEECHhHHhhCC
Confidence 344444432245889999999999877
No 306
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=20.65 E-value=2.7e+02 Score=23.58 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=36.3
Q ss_pred cCceEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEEEcHHHHHHHHHHHh
Q psy5044 146 ENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALS 211 (219)
Q Consensus 146 ~~~rvIavDlpGHG~s~s~~~~~~~~~Smd~lA~dL~~lLd~LgI~~~~lvG~SmGG~IAl~fA~~ 211 (219)
+++.+|.+|.+|. +. .-.++.+++.++++...-..+++|=-+..+.-.+.-+.+
T Consensus 82 ~~~D~vlIDT~Gr--~~----------~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~ 135 (196)
T PF00448_consen 82 KGYDLVLIDTAGR--SP----------RDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA 135 (196)
T ss_dssp TTSSEEEEEE-SS--SS----------THHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH
T ss_pred cCCCEEEEecCCc--ch----------hhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH
Confidence 3578999999998 32 226667778888888877777777666666655544433
Done!