RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5044
(219 letters)
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 87.5 bits (216), Expect = 6e-21
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 19/128 (14%)
Query: 85 HVNAPGQEEGAQPLADDVTQHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSL 144
G + +P + G++ + S FQ F F DM+ +
Sbjct: 24 TFTVYGTPKPKRPA-----------IFTYHDVGLN------YK--SCFQPLFRFGDMQEI 64
Query: 145 LENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNI 204
++NF HV+APG EEGA Y YP++D+L++ + +L Y ++IG+GVGAG I
Sbjct: 65 IQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGAGAYI 124
Query: 205 LARFALSH 212
L+R+AL+H
Sbjct: 125 LSRYALNH 132
Score = 70.2 bits (171), Expect = 1e-14
Identities = 38/102 (37%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 27 EEVYVETDRGSILVAVAGNR--GKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVY 84
VET GS+ V G +PAI TYHD+GLNY S FQ F F DM+ +++NF
Sbjct: 12 HTHSVETPYGSVTFTVYGTPKPKRPAIFTYHDVGLNYKSCFQPLFRFGDMQEIIQNFVRV 71
Query: 85 HVNAPGQEEGAQPLADDVTQHPLA-----LLMIIRHYGMDIC 121
HV+APG EEGA L + I+++
Sbjct: 72 HVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSTI 113
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 6e-05
Identities = 26/187 (13%), Positives = 50/187 (26%), Gaps = 57/187 (30%)
Query: 52 LTYHDLGLNYISNFQAFFNFSD----MRSLLENFSVYH-VNAPGQEEGAQPLADDVTQHP 106
Y D+ + F F+ D +S+L + H + + G
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT----------- 64
Query: 107 LALLMIIRHYGMDICY----DTDHTN----ISNFQAFFN--------FSDMRSLLEN--- 147
L L + ++ + N +S + + + R L N
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 148 -FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQL--LFVLSYFGLHSVIGLGVGAGGNI 204
F+ Y+V+ +L L L + G+ G+G
Sbjct: 125 VFAKYNVSRL---------------QPYLKLRQALLELRPAKNVLID---GVL-GSGKTW 165
Query: 205 LARFALS 211
+A
Sbjct: 166 VALDVCL 172
Score = 42.1 bits (98), Expect = 8e-05
Identities = 46/279 (16%), Positives = 84/279 (30%), Gaps = 84/279 (30%)
Query: 1 MDDVDL-RQVQLSIPLTRSL---------ARTDPTVEEVYVETDRGSILVAVAGNRGKPA 50
DL R+V + P S+ A D +V D+ + ++ + N +PA
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVLEPA 369
Query: 51 IL--TYHDLGL-----------------NYISNF-QAFFNFSDMRSLLE------NFSVY 84
+ L + + I + N SL+E S+
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 85 HVNAPGQEEGAQPLADDVTQHPLALLMIIRHYGMDICYDTDH-TNISNFQAFFNF----- 138
+ E L ++ H I+ HY + +D+D Q F++
Sbjct: 430 SI----YLELKVKLENEYALHR----SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 139 ---------SDMRSLLENFS-----VYHVNAPGQEEGAQP--LAD-----DYIY---PTM 174
+ R + +F + H + G+ L YI P
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 175 DELSNQLL-FVLSYFGLHSVIGLGVGAGGNILARFALSH 212
+ L N +L F+ + + ++L R AL
Sbjct: 542 ERLVNAILDFLPKI-EENLIC----SKYTDLL-RIALMA 574
Score = 41.0 bits (95), Expect = 2e-04
Identities = 33/230 (14%), Positives = 66/230 (28%), Gaps = 85/230 (36%)
Query: 1 MDDV---------DLR-QVQLSIPLTRSLARTDPTVEEVYVETDRGSILVAVAGNRGKPA 50
+ +V +L ++ L TR TD ++
Sbjct: 250 LLNVQNAKAWNAFNLSCKILL---TTRFKQVTD-----------------FLSAATTTHI 289
Query: 51 ILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNAPGQEEGAQPLADDVTQ-HPLAL 109
L +H + +++SLL + ++ Q+ L +V +P L
Sbjct: 290 SLDHHSMT----------LTPDEVKSLLLKY----LDCRPQD-----LPREVLTTNPRRL 330
Query: 110 LMI-------------IRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVY--HVN 154
+I +H D T I + ++ R + + SV+ +
Sbjct: 331 SIIAESIRDGLATWDNWKHVN----CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 155 APGQEEGAQPLA---DDYIYPT----MDELSNQLL----FVLSYFGLHSV 193
P L+ D I +++L L S + S+
Sbjct: 387 IP-----TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.085
Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 50/162 (30%)
Query: 58 GLNYISNFQAF---FNFSDMRSLLEN--FSVYHV--NAP-------GQEEGAQPLADDVT 103
G++ +A +N +D + FS+ + N P G E+G +
Sbjct: 1632 GMDLYKTSKAAQDVWNRAD-NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR------- 1683
Query: 104 QHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQE---- 159
IR + ++T + F + + E+ + Y +
Sbjct: 1684 ---------IRENYSAMIFETIVDGKLKTEKIF-----KEINEHSTSYTFRSEKGLLSAT 1729
Query: 160 EGAQP--LADDY-IYPTMDELSNQLLFVLSYF-GLHSVIGLG 197
+ QP + + + L+ + F G HS LG
Sbjct: 1730 QFTQPALTLMEKAAFEDLKS--KGLIPADATFAG-HS---LG 1765
Score = 27.3 bits (60), Expect = 5.0
Identities = 24/178 (13%), Positives = 44/178 (24%), Gaps = 93/178 (52%)
Query: 39 LVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDM------RSLLENFSVYHVNAPGQE 92
L ++A + + R + +V P E
Sbjct: 1770 LASLAD-----------------------VMSIESLVEVVFYRGMTMQVAV-----PRDE 1801
Query: 93 EGAQPLADDVTQHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLE------ 146
G +YGM N A F+ ++ ++E
Sbjct: 1802 LGRS------------------NYGMIAI------NPGRVAASFSQEALQYVVERVGKRT 1837
Query: 147 -------NFSVYHVNAPGQEEGAQPLADDYI----YPTMDELSNQLLFVLSYFGLHSV 193
N+ N Q Q Y+ +D ++N VL++ L +
Sbjct: 1838 GWLVEIVNY-----NVENQ----Q-----YVAAGDLRALDTVTN----VLNFIKLQKI 1877
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ,
RISC, slicer, RNAse H hydrolase-gene regulation complex;
2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10
PDB: 1z25_A 1z26_A
Length = 771
Score = 32.1 bits (72), Expect = 0.14
Identities = 7/55 (12%), Positives = 12/55 (21%), Gaps = 5/55 (9%)
Query: 106 PLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDMRSLLENFSVYHVNAPGQEE 160
II G+D+ A D + + + E
Sbjct: 549 RFNYDYII---GIDVAPMKRSEGYIGGSAV--MFDSQGYIRKIVPIKIGEQRGES 598
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 30.8 bits (70), Expect = 0.25
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 142 RSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAG 201
R L+ + ++ V+ G P YP M + L+ L + +G G
Sbjct: 37 RDLVNDHNIIQVDVRNH--GLSPREPVMNYPAM---AQDLVDTLDALQIDKATFIGHSMG 91
Query: 202 GNILARFALSH 212
G +
Sbjct: 92 GKAVMALTALA 102
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 28.5 bits (64), Expect = 1.9
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 17 RSLARTDPTVEEVYVETDRGSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRS 76
SL+ + Y+ T G V +G P ++ H + + + ++
Sbjct: 36 ESLSLWPVRCKSFYISTRFGQTHVIASGPEDAPPLVLLHGALFSS-TMWYP-----NIAD 89
Query: 77 LLENFSVYHVNAPG 90
+ Y V+ G
Sbjct: 90 WSSKYRTYAVDIIG 103
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 27.8 bits (62), Expect = 2.4
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 173 TMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSH 212
D ++ L +L L +V +G GG +AR+ ++
Sbjct: 76 EYDTFTSDLHQLLEQLELQNVTLVGFSMGGGEVARYISTY 115
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.10A {Escherichia coli SE11}
Length = 268
Score = 28.0 bits (63), Expect = 2.4
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 141 MRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGA 200
+ L + + V + G LA+DY ++ +++ +L L G+ +G
Sbjct: 35 LAVLEQEYQVVCYDQRGTGNNPDTLAEDY---SIAQMAAELHQALVAAGIEHYAVVGHAL 91
Query: 201 GGNILARFALSH 212
G + + AL +
Sbjct: 92 GALVGMQLALDY 103
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism;
1.90A {Burkholderia xenovorans}
Length = 266
Score = 27.6 bits (62), Expect = 2.7
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 173 TMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSH 212
T+++L+ +L ++ + G+ GG A H
Sbjct: 74 TIEQLTGDVLGLMDTLKIARANFCGLSMGGLTGVALAARH 113
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like
hydrolase, structural genomi center for structural
genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm
1728}
Length = 207
Score = 27.1 bits (60), Expect = 3.6
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 135 FFNFSDMRSLLEN-FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSV 193
+ + + ++VY + PG A + + + L G+
Sbjct: 43 WDKADLFNNYSKIGYNVYAPDYPGFGRSASSEKYGIDRGDLKHAAEFIRDYLKANGVARS 102
Query: 194 IGLGVGAGGNILARFALSH 212
+ +G GG ++ L +
Sbjct: 103 VIMGASMGGGMVIMTTLQY 121
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 27.4 bits (60), Expect = 4.0
Identities = 5/17 (29%), Positives = 7/17 (41%), Gaps = 1/17 (5%)
Query: 193 VIGLGVGAGGNILARFA 209
+G GGNI+
Sbjct: 9 FAPIG-QGGGNIVDTLL 24
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 27.2 bits (60), Expect = 4.1
Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 3/88 (3%)
Query: 126 HTNISNFQAFFNFSDMRSLLEN-FSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFV 184
H + + + N + L + + ++ PG + A + L V
Sbjct: 39 HGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEA-AAPAPI-GELAPGSFLAAV 96
Query: 185 LSYFGLHSVIGLGVGAGGNILARFALSH 212
+ L + + G F +
Sbjct: 97 VDALELGPPVVISPSLSGMYSLPFLTAP 124
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB:
1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B*
1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B*
2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Length = 342
Score = 27.1 bits (61), Expect = 4.3
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 160 EGAQPLA----DDYIYPTMDELSNQL 181
GA +A DYI+P D++ N+
Sbjct: 89 TGATAIAEIQFADYIFPAFDQIVNEA 114
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Length = 338
Score = 26.7 bits (60), Expect = 5.3
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 160 EGAQPLA----DDYIYPTMDELSNQL 181
G +P+ DY YP D++ +++
Sbjct: 74 YGLRPVVEIQFADYFYPASDQIVSEM 99
>1wpu_A HUTP, HUT operon positive regulatory protein; RNA binding, HUTP-RNA
complex, antitermination, transcription regulation; HET:
HIS; 1.48A {Bacillus subtilis} SCOP: d.275.1.1 PDB:
1wps_A 1wpt_A 1wmq_A* 1wpv_A* 1wrn_A* 1wro_A* 1wrq_A*
3boy_A* 2zh0_B* 1vea_A*
Length = 147
Score = 26.3 bits (57), Expect = 5.5
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 4 VDLRQVQLSIPLTRSLARTDPTVEEVYVETDRGSILVAVAGNRGKPAILTYHD---LGLN 60
+ L + ++ L ++ R +P E + I V++ G G P H+ +G+N
Sbjct: 90 MLLGSLLRTVGLRFAVLRGNPYESE----AEGDWIAVSLYGTIGAPIKGLEHETFGVGIN 145
Query: 61 YI 62
+I
Sbjct: 146 HI 147
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 26.9 bits (60), Expect = 5.5
Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 131 NFQAFFNFSD-MRSLLENFSVYHVNAPGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFG 189
A+ N+ + +L + + V + G +P +Y + D + ++ ++
Sbjct: 37 GVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNY---SKDSWVDHIIGIMDALE 93
Query: 190 LHSVIGLGVGAGGNILARFALSH 212
+ +G GG + AL +
Sbjct: 94 IEKAHIVGNAFGGGLAIATALRY 116
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure,
structural genomics, PSI-2, protein structure
initiative; 1.80A {Methanococcus maripaludis S2} PDB:
3c0b_A
Length = 334
Score = 26.8 bits (59), Expect = 5.7
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 155 APGQEEGAQPLADDYIYPTMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSHLW 214
E A+ +A +Y + + + V +G V+ G+G + + AL+
Sbjct: 241 DQISEIDAENIAKNYYELWKELILENVENVAEKYGSKKVVITGLGE---NILKDALADFE 297
Query: 215 YCSL 218
S+
Sbjct: 298 VISV 301
>1yf2_A Type I restriction-modification enzyme, S subunit; structura
genomics, PSI, protein structure initiative; 2.40A
{Methanocaldococcus jannaschii} SCOP: d.287.1.2
d.287.1.2
Length = 425
Score = 26.9 bits (60), Expect = 6.0
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 36 GSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHV 86
S+L A+ G+ G+ AI ++ N QA ++LE+ +Y++
Sbjct: 89 NSVLFAMYGSIGETAINKI-EVATN-----QAILGIIPKDNILESEFLYYI 133
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase;
2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Length = 369
Score = 26.8 bits (60), Expect = 6.2
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 160 EGAQPLA----DDYIYPTMDELSNQL 181
G +P+A D+I+ DEL N +
Sbjct: 120 AGLKPVAEIQFVDFIWLGADELLNHI 145
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 26.6 bits (59), Expect = 7.1
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 173 TMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSH 212
D + L VL L V+ +G G LAR+ +
Sbjct: 72 DYDTFAADLHTVLETLDLRDVVLVGFSMGTGELARYVARY 111
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 26.0 bits (58), Expect = 8.6
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 173 TMDELSNQLLFVLSYFGLHSVIGLGVGAGGNILARFALSH 212
T+ L +L +L + LG+ GG + AL
Sbjct: 75 TLARLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHA 114
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B*
1umc_B* 1umb_B*
Length = 324
Score = 26.3 bits (59), Expect = 8.7
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
Query: 160 EGAQPLA----DDYIYPTMDELSNQL 181
G +P+A DYI+P D+L +Q+
Sbjct: 73 HGLRPVAEIQFADYIFPGFDQLVSQV 98
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide,
hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP:
c.41.1.1
Length = 671
Score = 26.2 bits (57), Expect = 9.5
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 33 TDRGSILVAVAGNRGKPAILTY 54
+ G ++V AGN + Y
Sbjct: 285 MEHGVVMVVSAGNNTSDSHHQY 306
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I
methyltransferase, DNA binding, DNA BIND protein; 1.95A
{Thermoanaerobacter tengcongensis}
Length = 412
Score = 26.2 bits (58), Expect = 9.8
Identities = 4/34 (11%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 26 VEEVYVETDR-----GSILVAVAGNRGKPAILTY 54
++ + G +L++V G +
Sbjct: 272 TPRIWCSAPQKVARPGDVLISVRAPVGSTNVANL 305
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.414
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,364,542
Number of extensions: 197331
Number of successful extensions: 417
Number of sequences better than 10.0: 1
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 38
Length of query: 219
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 129
Effective length of database: 4,188,903
Effective search space: 540368487
Effective search space used: 540368487
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)