RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5044
         (219 letters)



>d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
           hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId:
           1831]}
          Length = 281

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 7/120 (5%)

Query: 25  TVE--EVYVETDRGSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSD-MRSLLENF 81
           TVE  E    +   +    VAG+   PA++  H  G        A  N+   +  L ENF
Sbjct: 1   TVEIIEKRFPSGTLASHALVAGDPQSPAVVLLHGAG----PGAHAASNWRPIIPDLAENF 56

Query: 82  SVYHVNAPGQEEGAQPLADDVTQHPLALLMIIRHYGMDICYDTDHTNISNFQAFFNFSDM 141
            V   +  G  +   P            + + +  G+   +  + ++I         +  
Sbjct: 57  FVVAPDLIGFGQSEYPETYPGHIMSWVGMRVEQILGLMNHFGIEKSHIVGNSMGGAVTLQ 116


>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris)
           [TaxId: 9615]}
          Length = 377

 Score = 27.4 bits (59), Expect = 1.6
 Identities = 19/111 (17%), Positives = 29/111 (26%), Gaps = 10/111 (9%)

Query: 26  VEEVYVETDRGSILV---------AVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRS 76
            EE  V T+ G IL                 +P     H L  +  +      N S    
Sbjct: 27  AEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPNNSLAFI 86

Query: 77  LLEN-FSVYHVNAPGQEEGAQPLADDVTQHPLALLMIIRHYGMDICYDTDH 126
           L +  + V+  N+ G     + L                    D+    D 
Sbjct: 87  LADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDF 137


>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 198

 Score = 26.4 bits (58), Expect = 2.1
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)

Query: 193 VIGLGVGAGGNILARFALSHL 213
           VIG+G G GGN +   A +++
Sbjct: 6   VIGVG-GGGGNAVNHMAKNNV 25


>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 209

 Score = 26.1 bits (57), Expect = 2.8
 Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 193 VIGLGVGAGGNILARFALSHL 213
           V+G G GAG N + R  +  +
Sbjct: 20  VVGCG-GAGNNTITRLKMEGI 39


>d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp.
           [TaxId: 1831]}
          Length = 291

 Score = 26.0 bits (55), Expect = 3.4
 Identities = 11/96 (11%), Positives = 24/96 (25%), Gaps = 6/96 (6%)

Query: 27  EEVYVETDRGSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHV 86
           +  YVE     +     G R    +L  H    +    ++       +  +  +      
Sbjct: 8   DPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTS-SYLWRNI-----IPHVAPSHRCIAP 61

Query: 87  NAPGQEEGAQPLADDVTQHPLALLMIIRHYGMDICY 122
           +  G  +  +P  D      +  L            
Sbjct: 62  DLIGMGKSDKPDLDYFFDDHVRYLDAFIEALGLEEV 97


>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid
           phosphoribosyltransferase (Nicotinate-nucleotide
           pyrophosphorylase, NadC), C-terminal domain {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 167

 Score = 24.6 bits (53), Expect = 7.7
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 31  VETDRGSILVAVAGNRGKPAILTYHDLGLNYIS 63
           V+   G   + V+GN     +  + + G+++IS
Sbjct: 117 VKRVNGQARLEVSGNVTAETLREFAETGVDFIS 149


>d2g6ta1 c.147.1.1 (A:1-305) Hypothetical protein CAC2185
           {Clostridium acetobutylicum [TaxId: 1488]}
          Length = 305

 Score = 24.8 bits (54), Expect = 8.7
 Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 52  LTYHDLGLNYISNFQAFFNFS-DMRSLLENFSVY 84
           L    LG  + S F  F+  + D    LEN   Y
Sbjct: 123 LVSSYLGFKFNSPFINFYIHNDDYIKFLENMDYY 156


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 800,235
Number of extensions: 35394
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 9
Length of query: 219
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,281,736
Effective search space: 175597832
Effective search space used: 175597832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)