Query psy5045
Match_columns 407
No_of_seqs 132 out of 153
Neff 5.2
Searched_HMMs 46136
Date Sat Aug 17 00:21:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3247|consensus 100.0 3E-105 6E-110 798.9 14.7 359 1-380 1-433 (466)
2 PF04925 SHQ1: SHQ1 protein; 100.0 3.7E-51 8E-56 379.6 6.7 112 239-350 10-121 (189)
3 cd06469 p23_DYX1C1_like p23_li 99.0 1.4E-09 3.1E-14 86.1 8.7 76 9-88 2-77 (78)
4 cd06463 p23_like Proteins cont 98.7 4.7E-08 1E-12 76.7 8.5 77 9-88 2-83 (84)
5 cd00298 ACD_sHsps_p23-like Thi 98.2 6.1E-06 1.3E-10 62.8 6.8 67 9-78 2-80 (80)
6 cd06467 p23_NUDC_like p23_like 98.2 1.4E-05 3E-10 64.2 9.1 80 6-88 1-84 (85)
7 PF04969 CS: CS domain; Inter 98.1 1.8E-05 4E-10 61.6 8.9 72 4-78 1-79 (79)
8 cd06466 p23_CS_SGT1_like p23_l 98.1 1.2E-05 2.7E-10 64.1 7.6 77 8-88 2-83 (84)
9 cd06465 p23_hB-ind1_like p23_l 98.0 4.1E-05 8.9E-10 64.9 9.4 80 4-88 1-86 (108)
10 PF08190 PIH1: pre-RNA process 97.8 9.1E-05 2E-09 73.4 8.4 67 10-77 258-327 (328)
11 cd06493 p23_NUDCD1_like p23_NU 97.8 0.00018 4E-09 58.6 8.8 80 6-88 1-84 (85)
12 cd06489 p23_CS_hSgt1_like p23_ 97.6 0.00028 6E-09 57.1 8.0 76 9-88 3-83 (84)
13 cd06468 p23_CacyBP p23_like do 97.6 0.00051 1.1E-08 56.2 8.8 80 5-88 3-91 (92)
14 cd00237 p23 p23 binds heat sho 97.5 0.00088 1.9E-08 57.5 9.3 80 4-88 2-86 (106)
15 cd06488 p23_melusin_like p23_l 97.4 0.00085 1.8E-08 55.0 8.6 80 5-88 2-86 (87)
16 cd06464 ACD_sHsps-like Alpha-c 97.4 0.00049 1.1E-08 54.6 6.7 68 8-78 2-88 (88)
17 cd06471 ACD_LpsHSP_like Group 97.4 0.00052 1.1E-08 56.4 6.8 71 4-78 1-93 (93)
18 COG0071 IbpA Molecular chapero 97.3 0.0011 2.4E-08 59.4 8.8 78 2-82 39-136 (146)
19 cd06470 ACD_IbpA-B_like Alpha- 97.1 0.0029 6.2E-08 52.2 8.0 70 4-78 1-90 (90)
20 cd06492 p23_mNUDC_like p23-lik 96.9 0.0056 1.2E-07 50.5 8.6 80 6-88 1-86 (87)
21 PF00011 HSP20: Hsp20/alpha cr 96.9 0.0059 1.3E-07 50.5 8.8 73 7-82 1-91 (102)
22 cd06472 ACD_ScHsp26_like Alpha 96.9 0.0035 7.6E-08 51.6 7.1 70 6-78 2-92 (92)
23 cd06494 p23_NUDCD2_like p23-li 96.9 0.0071 1.5E-07 50.8 8.9 83 3-88 5-92 (93)
24 PRK11597 heat shock chaperone 96.8 0.0069 1.5E-07 54.7 8.6 73 3-80 32-123 (142)
25 PRK10743 heat shock protein Ib 96.8 0.0083 1.8E-07 53.8 8.8 72 4-80 35-125 (137)
26 cd06478 ACD_HspB4-5-6 Alpha-cr 96.2 0.016 3.4E-07 47.3 6.5 70 7-78 1-83 (83)
27 cd06526 metazoan_ACD Alpha-cry 96.0 0.019 4.1E-07 46.4 6.0 67 10-78 4-83 (83)
28 cd06490 p23_NCB5OR p23_like do 95.9 0.043 9.2E-07 45.2 7.6 79 7-88 2-86 (87)
29 cd06497 ACD_alphaA-crystallin_ 95.8 0.037 8E-07 45.5 6.9 70 7-78 4-86 (86)
30 cd06498 ACD_alphaB-crystallin_ 95.4 0.062 1.3E-06 44.1 6.9 70 8-79 2-84 (84)
31 PLN03088 SGT1, suppressor of 94.8 0.11 2.3E-06 53.1 8.1 84 4-91 157-245 (356)
32 cd06495 p23_NUDCD3_like p23-li 94.2 0.35 7.6E-06 41.4 8.8 82 2-88 3-93 (102)
33 cd06476 ACD_HspB2_like Alpha c 92.8 0.41 8.8E-06 39.3 6.5 68 9-78 3-83 (83)
34 cd06479 ACD_HspB7_like Alpha c 91.2 0.64 1.4E-05 38.0 6.0 69 8-78 3-81 (81)
35 KOG3158|consensus 89.3 1.1 2.3E-05 42.2 6.4 83 1-88 5-93 (180)
36 KOG1309|consensus 89.1 1 2.2E-05 42.7 6.1 82 4-89 4-90 (196)
37 cd06475 ACD_HspB1_like Alpha c 88.6 2.1 4.5E-05 35.2 7.0 69 7-77 4-85 (86)
38 cd06481 ACD_HspB9_like Alpha c 88.0 1.3 2.9E-05 36.4 5.6 65 12-78 6-87 (87)
39 cd06482 ACD_HspB10 Alpha cryst 78.9 7.7 0.00017 32.2 6.4 67 9-77 4-86 (87)
40 cd06477 ACD_HspB3_Like Alpha c 70.2 16 0.00035 30.0 6.2 65 11-77 5-82 (83)
41 KOG4317|consensus 60.1 6.9 0.00015 40.1 2.6 83 267-350 195-284 (383)
42 COG4703 Uncharacterized protei 56.0 12 0.00025 30.3 2.8 31 62-92 36-66 (74)
43 PF05455 GvpH: GvpH; InterPro 53.9 97 0.0021 29.4 8.9 75 5-83 93-172 (177)
44 PF08796 DUF1797: Protein of u 44.4 11 0.00023 30.3 0.9 32 61-92 29-60 (67)
45 PF13437 HlyD_3: HlyD family s 41.0 63 0.0014 26.4 5.1 70 3-79 25-94 (105)
46 PRK05260 condesin subunit F; P 27.1 51 0.0011 35.0 2.8 40 310-349 349-409 (440)
47 PF00207 A2M: Alpha-2-macroglo 26.8 47 0.001 27.1 2.0 53 11-63 12-74 (92)
48 KOG1667|consensus 25.8 2.2E+02 0.0048 28.7 6.8 88 6-97 217-310 (320)
49 cd05721 IgV_CTLA-4 Immunoglobu 23.2 88 0.0019 27.5 3.2 43 4-47 61-103 (115)
50 KOG2265|consensus 21.6 3.8E+02 0.0083 25.5 7.2 80 3-85 18-102 (179)
51 PF04398 DUF538: Protein of un 20.9 62 0.0013 28.1 1.7 39 48-87 8-46 (110)
52 PF09294 Interfer-bind: Interf 20.0 1.2E+02 0.0026 24.7 3.2 22 3-24 5-26 (106)
No 1
>KOG3247|consensus
Probab=100.00 E-value=2.7e-105 Score=798.85 Aligned_cols=359 Identities=33% Similarity=0.561 Sum_probs=327.8
Q ss_pred CCCceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEeecCceeeecCCCCcccCCCCcceeeCCCcEEEEEEeccC
Q psy5045 1 MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVN 80 (407)
Q Consensus 1 MiTP~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpKe~ 80 (407)
||||+|++|||++|++++|++|+.+++++|+.+.+++|.||+.||||||+|||.+.++++..|+||+.+|.++||+||.+
T Consensus 1 Mltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~~~pyflrl~~p~~~~~d~~~n~s~d~kd~~~~vK~~K~~ 80 (466)
T KOG3247|consen 1 MLTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFSAGPYFLRLAGPGMVEDDARPNASYDAKDGYAHVKVPKFH 80 (466)
T ss_pred CCCceeeeeecCceEEEEeeccccchhccchhhHhhhhhhccchhHHhhcCcchhhhhccccCccccccceeEEeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcchhhhcCCCCCCCCCCCceEEcCCCCCCC-------CCcc----------ccCCcCCceecccCCCCCCCC
Q psy5045 81 TGEHFPDLDLISKLLIPPVKHRVAKPGIEVMSEPNNVS-------DEDE----------DEDDDTMWFIEQEPQHQPEEN 143 (407)
Q Consensus 81 ~Ge~F~dLDm~tkLLap~~~~~~~~plIe~i~~~~~~~-------~~~~----------~~~e~~dw~ieQ~~~~~~~~~ 143 (407)
|||||+||||+||||+|+++.+.++||+|+++.+...+ +.++ .++++|+|+++|.+.+.....
T Consensus 81 ~~e~F~~Ldllt~lL~~q~~~~~~~~LvEe~~~se~P~~~~~~~~g~~e~~k~d~~ti~~d~~eFdWeieq~~dee~~~~ 160 (466)
T KOG3247|consen 81 PGEHFSDLDLLTKLLTPQNKSPTAKPLVEEAGDSEIPGGERGGGGGTEEAAKQDLPTISVDDEEFDWEIEQTPDEETREY 160 (466)
T ss_pred ccccccchhhhHHhcccCCcccccchhhhhhccCCCCcccccCCCCchhhhhhcccccccCCccccceeccccccccccc
Confidence 99999999999999999888999999999887654442 1122 567889999999965443333
Q ss_pred CCCCcccCCCCcccccccchhhhccCCCCCCcccccCccch--HHHHHHHHh------CcchhhhcccccCchhhhhhhh
Q psy5045 144 STTYGYGFANKTKGTLTNMKVTISKSDLGFDLEELETAARI--VEEEEVERA------LCNHVSTLVLCSNSEQSERSII 215 (407)
Q Consensus 144 ~~~~~YGF~n~~sg~f~~l~~e~i~~~~g~dI~dl~dPe~t--~eR~~~Rl~------D~d~YlaD~~~~ede~i~~lL~ 215 (407)
...++|||+|.|||++.+++. + ||||++|++||+| .+|+++|++ |||||+|||| +.+.+ +|+
T Consensus 161 ~l~~~YGF~n~ysgvl~~~~~----~--~n~i~~i~ePe~t~~~~R~~eRv~~E~~kFD~e~Yladf~--e~e~~--~l~ 230 (466)
T KOG3247|consen 161 KLTFGYGFGNLYSGVLDRSEL----E--GNDINDISEPERTPPIQRRQERVVDEMEKFDPEHYLADFV--ELEVI--ILH 230 (466)
T ss_pred ceeecccccccccchhhhhhh----c--cccccccCCcccCCHHHHHHHHHHHHHhccCHHHhHHhhh--hhhhh--hcc
Confidence 345899999999999999863 3 7889999999999 999999999 9999999999 88888 999
Q ss_pred ccccccc----cccccccchhhhcccCCCCCCCHHHHHHHhh-cCCccccCChhhHHHHHHHHHHHHHHhhheeeecCCC
Q psy5045 216 FFIGLDF----WVVSRDYASDVRQAQDDRTQMTPSELDTMKQ-LGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGE 290 (407)
Q Consensus 216 ~~p~~~~----w~~~~~~~~~~~~~~~~~~~fT~eE~~~L~~-Lp~keyl~~~~~~~~l~l~LvdILfAY~Yd~R~teGe 290 (407)
|.|++.+ |+++ .+..+++||+|||.||++ +|+|+|++++ .+.+|++++|||||||||+|||+||
T Consensus 231 ~~P~~~k~~l~~~~~---------k~~~~~eftdeer~ql~d~~p~ksyl~~~--~~~~~i~~~~ilfaycYd~r~t~ge 299 (466)
T KOG3247|consen 231 YNPWRIKEKLYVTSM---------KSEQLLEFTDEERMQLRDQLPKKSYLQDN--IKCVYICLSDILFAYCYDQRTTEGE 299 (466)
T ss_pred cChHHHHHHHHHhhh---------ccccccccchHHHHHHHhhcccchhhhcC--CCceEEeehhhhhhhhhheeccCCC
Confidence 9998653 3332 233479999999999995 9999999975 6889999999999999999999999
Q ss_pred CCccccchhhhhccccccccCcCCHHHHHHHhhhhhcccccchhHHHHHHHHHHHHHHhh--------------------
Q psy5045 291 HTVESGWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREWRLSCAIQQDVNTILS-------------------- 350 (407)
Q Consensus 291 ~tvES~WTI~KLSptLS~ld~~~~l~~vlia~~RRsL~YPLyRnf~L~~kv~~Dv~~iL~-------------------- 350 (407)
|||||||||.+|||.+|||.+|.++++++|||+||+|||||||||+|++|||+||++||+
T Consensus 300 ~t~ES~Wn~~~lspi~c~feqf~nv~dilva~~RR~LtYPLYRnf~Lamk~~~d~~~IL~~Gk~~vl~~LLdiH~~F~~~ 379 (466)
T KOG3247|consen 300 PTCESGWNIRLLSPILCLFEQFTNVKDILVAFIRRALTYPLYRNFDLAMKAWRDTIKILQLGKRAVLRCLLDIHKIFQEH 379 (466)
T ss_pred cchhhccchhccChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999998
Q ss_pred -----------hhhhH-------------HHhhhhccccccccCCChHHHHHHH
Q psy5045 351 -----------QDILG-------------YKVMKQVTISKSDLGFDLDELETAA 380 (407)
Q Consensus 351 -----------~DYcv-------------~~~l~~~~i~K~~lgl~LeelE~aa 380 (407)
.|||+ |.+|+++.|+|.++||+||+||++|
T Consensus 380 d~~Yi~N~l~l~DY~~Wiqs~~s~vl~~LA~~lkevsitK~~lglelEeiEa~~ 433 (466)
T KOG3247|consen 380 DVYYILNDLYLSDYIVWIQSVKSNVLAALAEALKEVSITKAQLGLELEEIEAEA 433 (466)
T ss_pred cHHHHHHHHHHHhhhhheeccChHHHHHHHHHHHHhhhhHHhcCCcHHHHHHHh
Confidence 69998 8889999999999999999999998
No 2
>PF04925 SHQ1: SHQ1 protein; InterPro: IPR007009 This conserved region identifies a set of hypothetical protein sequences from the Metazoa and Ascomycota which include SHQ1 from Saccharomyces cerevisiae.; PDB: 3ZV0_A 3ZUZ_A 3UAH_A 3UAI_D.
Probab=100.00 E-value=3.7e-51 Score=379.59 Aligned_cols=112 Identities=52% Similarity=0.929 Sum_probs=86.0
Q ss_pred CCCCCCHHHHHHHhhcCCccccCChhhHHHHHHHHHHHHHHhhheeeecCCCCCccccchhhhhccccccccCcCCHHHH
Q psy5045 239 DRTQMTPSELDTMKQLGNREYLLSSEEKCAVLLSLVNILYAYCYDVRTTMGEHTVESGWTVNKLSSALCWLQSFTSLKQV 318 (407)
Q Consensus 239 ~~~~fT~eE~~~L~~Lp~keyl~~~~~~~~l~l~LvdILfAY~Yd~R~teGe~tvES~WTI~KLSptLS~ld~~~~l~~v 318 (407)
.+++||+||+++|++||||+||+++...+.+|+||||||||||||+|+|+||||+||||||+||||||||||+|+++++|
T Consensus 10 ~~~eft~eE~~~l~~Lp~k~yl~~~~~~~~~~~~LvdILfAY~Yd~R~~~Ge~~~ES~WtI~kLSptls~ld~~~~v~~~ 89 (189)
T PF04925_consen 10 KPVEFTEEEQEQLKNLPKKEYLISDEEEKQLYLGLVDILFAYCYDQRTTEGEHNVESAWTIGKLSPTLSWLDQFSSVKEV 89 (189)
T ss_dssp T-----HHHHHHHHHS-------S----HHHHHHHHHHHHHHHHHHHHTTT---TTHHHHHHHH-HHHHT--SHHHHHHH
T ss_pred CCCCCCHHHHHHHHhCCCchhcCChhhHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhHHHHHHhccCcHHHH
Confidence 48999999999999999999999987889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcccccchhHHHHHHHHHHHHHHhh
Q psy5045 319 LISSMRRSLCYPLYREWRLSCAIQQDVNTILS 350 (407)
Q Consensus 319 lia~~RRsL~YPLyRnf~L~~kv~~Dv~~iL~ 350 (407)
|++|+||||||||||||+|+++||+||++||+
T Consensus 90 li~~~RRsL~yPL~R~~~L~~~v~~Dv~~iL~ 121 (189)
T PF04925_consen 90 LIACIRRSLCYPLYRNFDLAMKVWKDVYYILR 121 (189)
T ss_dssp HHHHHHHHTTSSS---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998
No 3
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.02 E-value=1.4e-09 Score=86.10 Aligned_cols=76 Identities=25% Similarity=0.516 Sum_probs=66.9
Q ss_pred eecCCeEEEEEecccccCCcceEEEeCcEEEEeecCceeeecCCCCcccCCCCcceeeCCCcEEEEEEeccCCCCCCCCC
Q psy5045 9 LQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVNTGEHFPDL 88 (407)
Q Consensus 9 tQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpKe~~Ge~F~dL 88 (407)
.|+++.|+|.|.+|.++..++++.+.++.|.++++||++.++||+.|. .+.+++++ ++|.+.|+|||+.+| .++.|
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~~~~~~~~~l~~~I~-~e~~~~~~--~~~~l~i~L~K~~~~-~W~~L 77 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNFPPYLFELDLAAPID-DEKSSAKI--GNGVLVFTLVKKEPG-IWEAL 77 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEEEecCEEEEcCCCEEEEEeCccccc-ccccEEEE--eCCEEEEEEEeCCCC-ccccc
Confidence 699999999999999999999999999999999999999999999994 44455554 568999999999986 66665
No 4
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.75 E-value=4.7e-08 Score=76.69 Aligned_cols=77 Identities=26% Similarity=0.396 Sum_probs=69.8
Q ss_pred eecCCeEEEEEecccccCCcceEEEeCcEEEEee-----cCceeeecCCCCcccCCCCcceeeCCCcEEEEEEeccCCCC
Q psy5045 9 LQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-----SPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVNTGE 83 (407)
Q Consensus 9 tQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~-----~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpKe~~Ge 83 (407)
+|+++.|+|.|.+|.+...++++.+.++.+.+.+ .+|++.+.|+++|..++ ++|...+|.+.|+|+|..+|+
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~---s~~~~~~~~l~i~L~K~~~~~ 78 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEE---SKWTVEDRKIEITLKKKEPGE 78 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhh---cEEEEeCCEEEEEEEECCCCC
Confidence 6999999999999999999999999999999887 68999999999998763 556667899999999999999
Q ss_pred CCCCC
Q psy5045 84 HFPDL 88 (407)
Q Consensus 84 ~F~dL 88 (407)
.++.|
T Consensus 79 ~W~~l 83 (84)
T cd06463 79 WWPRL 83 (84)
T ss_pred CCccc
Confidence 99876
No 5
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.17 E-value=6.1e-06 Score=62.82 Aligned_cols=67 Identities=19% Similarity=0.372 Sum_probs=59.4
Q ss_pred eecCCeEEEEEecccccCCcceEEEeCcEEEEe------------ecCceeeecCCCCcccCCCCcceeeCCCcEEEEEE
Q psy5045 9 LQSEEDVTIIIKAPYANIADTEVYVEDTDFRFS------------SSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTV 76 (407)
Q Consensus 9 tQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~------------~~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~l 76 (407)
.|+++.++|.|.+|.....++.+.++++.+.+. ..+|++++.||+.+..+ ..+++|+ +|.++|++
T Consensus 2 ~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~-~~~~~~~--~~~l~i~l 78 (80)
T cd00298 2 YQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPE-KSKASLE--NGVLEITL 78 (80)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHH-HCEEEEE--CCEEEEEE
Confidence 689999999999999999999999999999998 46999999999999876 3555555 59999999
Q ss_pred ec
Q psy5045 77 IK 78 (407)
Q Consensus 77 pK 78 (407)
||
T Consensus 79 ~K 80 (80)
T cd00298 79 PK 80 (80)
T ss_pred cC
Confidence 98
No 6
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=98.17 E-value=1.4e-05 Score=64.24 Aligned_cols=80 Identities=20% Similarity=0.329 Sum_probs=70.7
Q ss_pred eEeeecCCeEEEEEeccc-ccCCcceEEEeCcEEEEeec--CceeeecCCCCcccCCCCcceeeCCC-cEEEEEEeccCC
Q psy5045 6 FELLQSEEDVTIIIKAPY-ANIADTEVYVEDTDFRFSSS--PYYLRLNFPGPIKETDHTSGKYDSDK-GQFTFTVIKVNT 81 (407)
Q Consensus 6 F~itQd~~fv~I~I~~p~-~~~~~~ei~vd~~~F~F~~~--PYyLRL~fp~~lved~~~~a~Yd~d~-g~~tv~lpKe~~ 81 (407)
|.-+|+++.|+|.|.+|. ++..++.+.+.++-+.+..+ +|+|-++|.++|..++ +.|..++ ..+.|+|+|+.+
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~l~~~L~~~I~~~~---s~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDE---STWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCCCceEcCcccCceeEcC---CEEEEeCCCEEEEEEEECCC
Confidence 456899999999999985 68999999999999999986 7889999999999876 5688888 999999999999
Q ss_pred CCCCCCC
Q psy5045 82 GEHFPDL 88 (407)
Q Consensus 82 Ge~F~dL 88 (407)
|...+.|
T Consensus 78 ~~~W~~L 84 (85)
T cd06467 78 GEWWPSL 84 (85)
T ss_pred Ccccccc
Confidence 8888765
No 7
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.13 E-value=1.8e-05 Score=61.60 Aligned_cols=72 Identities=24% Similarity=0.426 Sum_probs=63.0
Q ss_pred ceeEeeecCCeEEEEEec-cc-ccCCcceEEEeCcEEEEeec-----CceeeecCCCCcccCCCCcceeeCCCcEEEEEE
Q psy5045 4 PMFELLQSEEDVTIIIKA-PY-ANIADTEVYVEDTDFRFSSS-----PYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTV 76 (407)
Q Consensus 4 P~F~itQd~~fv~I~I~~-p~-~~~~~~ei~vd~~~F~F~~~-----PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~l 76 (407)
|+|.-.|+++.|+|.|.+ |. ++..++.+.+.++.+.+.++ +|++.+.|.|+|..++ ++|...++.+.|+|
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~---s~~~~~~~~i~i~L 77 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDE---STWKVKDNKIEITL 77 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCC---EEEEEETTEEEEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchh---cEEEEECCEEEEEE
Confidence 899999999999999999 44 46999999999999999985 8999999999999875 67888888999999
Q ss_pred ec
Q psy5045 77 IK 78 (407)
Q Consensus 77 pK 78 (407)
.|
T Consensus 78 ~K 79 (79)
T PF04969_consen 78 KK 79 (79)
T ss_dssp EB
T ss_pred EC
Confidence 88
No 8
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.10 E-value=1.2e-05 Score=64.14 Aligned_cols=77 Identities=27% Similarity=0.403 Sum_probs=68.0
Q ss_pred eeecCCeEEEEEecccccCCcceEEEeCcEEEEee-----cCceeeecCCCCcccCCCCcceeeCCCcEEEEEEeccCCC
Q psy5045 8 LLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-----SPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVNTG 82 (407)
Q Consensus 8 itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~-----~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpKe~~G 82 (407)
-.|+++.|+|.|.+|-+...++.+.+.++.+.|.+ ++|.+.+.|++.|..+ .++|-..++.+.|+|.|+.+|
T Consensus 2 W~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~---~s~~~~~~~~vei~L~K~~~~ 78 (84)
T cd06466 2 WYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPE---QSKVSVLPTKVEITLKKAEPG 78 (84)
T ss_pred ccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCch---hcEEEEeCeEEEEEEEcCCCC
Confidence 36999999999999998889999999999999976 3799999999999865 467888899999999999985
Q ss_pred CCCCCC
Q psy5045 83 EHFPDL 88 (407)
Q Consensus 83 e~F~dL 88 (407)
.++.|
T Consensus 79 -~W~~L 83 (84)
T cd06466 79 -SWPSL 83 (84)
T ss_pred -CCccC
Confidence 77766
No 9
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.00 E-value=4.1e-05 Score=64.91 Aligned_cols=80 Identities=29% Similarity=0.443 Sum_probs=71.1
Q ss_pred ceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEeec--C----ceeeecCCCCcccCCCCcceeeCCCcEEEEEEe
Q psy5045 4 PMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS--P----YYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVI 77 (407)
Q Consensus 4 P~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~--P----YyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lp 77 (407)
|.|.-.|+.+.|+|.|.+|.+ .++.+.+..+.+.|.+. + |+|-+.|.++|..++ ++|....+.+.|+|.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~---s~~~v~~~kveI~L~ 75 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEE---SKYKVTGRQIEFVLR 75 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccc---cEEEecCCeEEEEEE
Confidence 778899999999999999987 88999999999999875 2 999999999998764 678888899999999
Q ss_pred ccCCCCCCCCC
Q psy5045 78 KVNTGEHFPDL 88 (407)
Q Consensus 78 Ke~~Ge~F~dL 88 (407)
|+.+|+..+.|
T Consensus 76 K~~~~~~W~~L 86 (108)
T cd06465 76 KKEAGEYWPRL 86 (108)
T ss_pred ECCCCCCCccc
Confidence 99966678777
No 10
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.75 E-value=9.1e-05 Score=73.42 Aligned_cols=67 Identities=28% Similarity=0.476 Sum_probs=61.5
Q ss_pred ecCCeEEEEEecccc-cCCcceEEEeCcEEEEeecC--ceeeecCCCCcccCCCCcceeeCCCcEEEEEEe
Q psy5045 10 QSEEDVTIIIKAPYA-NIADTEVYVEDTDFRFSSSP--YYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVI 77 (407)
Q Consensus 10 Qd~~fv~I~I~~p~~-~~~~~ei~vd~~~F~F~~~P--YyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lp 77 (407)
.-.+.|.|.|..|-+ .++++++.|.++.....+.. |+|+|.||++|-+ +.++|.||.++++++|+||
T Consensus 258 ~~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~~y~L~l~LP~~V~~-~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 258 GSPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKPKYRLDLPLPYPVDE-DNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CCCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCCceEEEccCCCcccC-CCceEEEccCCCEEEEEEE
Confidence 346899999999998 79999999999999999999 9999999997765 4588999999999999998
No 11
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.75 E-value=0.00018 Score=58.55 Aligned_cols=80 Identities=19% Similarity=0.319 Sum_probs=68.7
Q ss_pred eEeeecCCeEEEEEecc-cccCCcceEEEeCcEEEEeec--CceeeecCCCCcccCCCCcceeeCCCc-EEEEEEeccCC
Q psy5045 6 FELLQSEEDVTIIIKAP-YANIADTEVYVEDTDFRFSSS--PYYLRLNFPGPIKETDHTSGKYDSDKG-QFTFTVIKVNT 81 (407)
Q Consensus 6 F~itQd~~fv~I~I~~p-~~~~~~~ei~vd~~~F~F~~~--PYyLRL~fp~~lved~~~~a~Yd~d~g-~~tv~lpKe~~ 81 (407)
|.-+|+++.|+|.|.+| .++..++.+.+..+-+.++.+ +.++-..|.++|.-|+ ++|-..++ .+.|+|.|..+
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~~~~~~g~L~~~I~~d~---Stw~i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHES---STWIIKENKSLEVSLIKKDE 77 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCCCeEEeCcccCcccccC---cEEEEeCCCEEEEEEEECCC
Confidence 34589999999999996 678999999999999999986 5778889999998776 56887555 69999999999
Q ss_pred CCCCCCC
Q psy5045 82 GEHFPDL 88 (407)
Q Consensus 82 Ge~F~dL 88 (407)
|+.++.|
T Consensus 78 ~~~W~~L 84 (85)
T cd06493 78 GPTWPEL 84 (85)
T ss_pred Ccccccc
Confidence 9888765
No 12
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.62 E-value=0.00028 Score=57.07 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=67.0
Q ss_pred eecCCeEEEEEecccccCCcceEEEeCcEEEEee-----cCceeeecCCCCcccCCCCcceeeCCCcEEEEEEeccCCCC
Q psy5045 9 LQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-----SPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVNTGE 83 (407)
Q Consensus 9 tQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~-----~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpKe~~Ge 83 (407)
.|++++|+|.|.++-+...++.+.+.++.+.|.+ +.|.+-+.|.+.|..+ .++|....+.+.|+|.|+.+ .
T Consensus 3 ~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~---~s~~~v~~~kiei~L~K~~~-~ 78 (84)
T cd06489 3 YQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPE---QSSYKILSTKIEIKLKKTEA-I 78 (84)
T ss_pred cccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecch---hcEEEEeCcEEEEEEEcCCC-C
Confidence 5999999999999988889999999999999976 4799999999999865 36798889999999999974 5
Q ss_pred CCCCC
Q psy5045 84 HFPDL 88 (407)
Q Consensus 84 ~F~dL 88 (407)
.++.|
T Consensus 79 ~W~~L 83 (84)
T cd06489 79 RWSKL 83 (84)
T ss_pred CCccC
Confidence 78776
No 13
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.56 E-value=0.00051 Score=56.19 Aligned_cols=80 Identities=16% Similarity=0.266 Sum_probs=68.9
Q ss_pred eeEeeecCCeEEEEEecccccC---CcceEEEeCcEEEEeec-----Cceeeec-CCCCcccCCCCcceeeCCCcEEEEE
Q psy5045 5 MFELLQSEEDVTIIIKAPYANI---ADTEVYVEDTDFRFSSS-----PYYLRLN-FPGPIKETDHTSGKYDSDKGQFTFT 75 (407)
Q Consensus 5 ~F~itQd~~fv~I~I~~p~~~~---~~~ei~vd~~~F~F~~~-----PYyLRL~-fp~~lved~~~~a~Yd~d~g~~tv~ 75 (407)
+|.-+|.++.|+|.|.+|.+.. .++++.+..+.|.|.+. +|.|.+. |-++|..++ ++|......+.|+
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~---s~~~~~~~ki~i~ 79 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEK---SSFKVKTDRIVIT 79 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccc---cEEEEeCCEEEEE
Confidence 4677999999999999999865 89999999999999873 5888885 999998875 6788889999999
Q ss_pred EeccCCCCCCCCC
Q psy5045 76 VIKVNTGEHFPDL 88 (407)
Q Consensus 76 lpKe~~Ge~F~dL 88 (407)
|.|+.+ +.++.|
T Consensus 80 L~K~~~-~~W~~L 91 (92)
T cd06468 80 LAKKKE-KKWESL 91 (92)
T ss_pred EEeCCC-CccCcc
Confidence 999998 467665
No 14
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.46 E-value=0.00088 Score=57.47 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=69.7
Q ss_pred ceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEeec-----CceeeecCCCCcccCCCCcceeeCCCcEEEEEEec
Q psy5045 4 PMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS-----PYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIK 78 (407)
Q Consensus 4 P~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~-----PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpK 78 (407)
|...--|..+.|+|+|.+|- +.++.+.+.++.+.|.++ .|++-|.|=+.|..++ ++|....-.+.|+|.|
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~---Sk~~v~~r~ve~~L~K 76 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPND---SKHKRTDRSILCCLRK 76 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCccc---CeEEeCCceEEEEEEe
Confidence 55667799999999999997 689999999999999983 4999999999997654 6799999999999999
Q ss_pred cCCCCCCCCC
Q psy5045 79 VNTGEHFPDL 88 (407)
Q Consensus 79 e~~Ge~F~dL 88 (407)
...|+..+-|
T Consensus 77 ~~~~~~WprL 86 (106)
T cd00237 77 GKEGVAWPRL 86 (106)
T ss_pred CCCCCCCchh
Confidence 9988777654
No 15
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.44 E-value=0.00085 Score=55.01 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=68.4
Q ss_pred eeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEee-----cCceeeecCCCCcccCCCCcceeeCCCcEEEEEEecc
Q psy5045 5 MFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-----SPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKV 79 (407)
Q Consensus 5 ~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~-----~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpKe 79 (407)
||.--|.+++|+|+|.+..+....+.+.++.+...|.+ ++|-+.|.|-|+|..+. ++|.+....+-|+|.|+
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~---s~~~v~~~kvei~L~K~ 78 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEK---SSVNMLPTKVEIKLRKA 78 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhH---cEEEecCcEEEEEEEeC
Confidence 56778999999999999988888899999887755543 47999999999998654 78999999999999999
Q ss_pred CCCCCCCCC
Q psy5045 80 NTGEHFPDL 88 (407)
Q Consensus 80 ~~Ge~F~dL 88 (407)
.+| .++.|
T Consensus 79 ~~~-~W~~L 86 (87)
T cd06488 79 EPG-SWAKL 86 (87)
T ss_pred CCC-cCccC
Confidence 976 77766
No 16
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.41 E-value=0.00049 Score=54.59 Aligned_cols=68 Identities=18% Similarity=0.294 Sum_probs=60.1
Q ss_pred eeecCCeEEEEEecccccCCcceEEEeCcEEEEe-------------------ecCceeeecCCCCcccCCCCcceeeCC
Q psy5045 8 LLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFS-------------------SSPYYLRLNFPGPIKETDHTSGKYDSD 68 (407)
Q Consensus 8 itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~-------------------~~PYyLRL~fp~~lved~~~~a~Yd~d 68 (407)
+.++++.++|.|.+|.++..++++.++++...-+ ...|..++.||..+-.+ ..+|+|+-
T Consensus 2 i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~-~i~a~~~~- 79 (88)
T cd06464 2 VYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPD-KIKASLEN- 79 (88)
T ss_pred cEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHH-HcEEEEeC-
Confidence 5678899999999999999999999999887777 78899999999988776 66777775
Q ss_pred CcEEEEEEec
Q psy5045 69 KGQFTFTVIK 78 (407)
Q Consensus 69 ~g~~tv~lpK 78 (407)
|.++|++||
T Consensus 80 -G~L~I~~pk 88 (88)
T cd06464 80 -GVLTITLPK 88 (88)
T ss_pred -CEEEEEEcC
Confidence 999999998
No 17
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.39 E-value=0.00052 Score=56.40 Aligned_cols=71 Identities=14% Similarity=0.282 Sum_probs=57.4
Q ss_pred ceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEee----------------------cCceeeecCCCCcccCCCC
Q psy5045 4 PMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS----------------------SPYYLRLNFPGPIKETDHT 61 (407)
Q Consensus 4 P~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~----------------------~PYyLRL~fp~~lved~~~ 61 (407)
|+..|..+++.++|.+.+|-++..++++.++|+...-.. ..|--++.|| . ++-+..
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~-v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-N-VDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-C-CCHHHC
Confidence 567899999999999999999999999999998776632 2334456788 4 455557
Q ss_pred cceeeCCCcEEEEEEec
Q psy5045 62 SGKYDSDKGQFTFTVIK 78 (407)
Q Consensus 62 ~a~Yd~d~g~~tv~lpK 78 (407)
+|+| ++|.++|++||
T Consensus 79 ~A~~--~dGvL~I~lPK 93 (93)
T cd06471 79 KAKY--ENGVLKITLPK 93 (93)
T ss_pred EEEE--ECCEEEEEEcC
Confidence 8888 79999999998
No 18
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0011 Score=59.36 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=68.8
Q ss_pred CCceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEee--------------------cCceeeecCCCCcccCCCC
Q psy5045 2 LTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS--------------------SPYYLRLNFPGPIKETDHT 61 (407)
Q Consensus 2 iTP~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~--------------------~PYyLRL~fp~~lved~~~ 61 (407)
.+|...|.++++.+.|.+-+|-++-.+++|.++++.+.-.. ..|..++.||..+-.+ ..
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~-~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPE-VI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECccccccc-ce
Confidence 58999999999999999999999999999999999776554 4478899999999887 47
Q ss_pred cceeeCCCcEEEEEEeccCCC
Q psy5045 62 SGKYDSDKGQFTFTVIKVNTG 82 (407)
Q Consensus 62 ~a~Yd~d~g~~tv~lpKe~~G 82 (407)
+|+|. +|.++|+|||..+-
T Consensus 118 ~A~~~--nGvL~I~lpk~~~~ 136 (146)
T COG0071 118 KAKYK--NGLLTVTLPKAEPE 136 (146)
T ss_pred eeEee--CcEEEEEEeccccc
Confidence 78875 99999999998874
No 19
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=97.08 E-value=0.0029 Score=52.21 Aligned_cols=70 Identities=16% Similarity=0.328 Sum_probs=59.5
Q ss_pred ceeEeeec-CCeEEEEEecccccCCcceEEEeCcEEEEe-------------------ecCceeeecCCCCcccCCCCcc
Q psy5045 4 PMFELLQS-EEDVTIIIKAPYANIADTEVYVEDTDFRFS-------------------SSPYYLRLNFPGPIKETDHTSG 63 (407)
Q Consensus 4 P~F~itQd-~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~-------------------~~PYyLRL~fp~~lved~~~~a 63 (407)
|...|.++ ++...|.+.+|-++-.+++|.++|+..+-. ...|.-++.||..+-.+ +|
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~---~A 77 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK---GA 77 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC---ee
Confidence 67889886 489999999999999999999999877766 57788999999987542 56
Q ss_pred eeeCCCcEEEEEEec
Q psy5045 64 KYDSDKGQFTFTVIK 78 (407)
Q Consensus 64 ~Yd~d~g~~tv~lpK 78 (407)
+| ++|.++|+||+
T Consensus 78 ~~--~~GvL~I~l~~ 90 (90)
T cd06470 78 EL--ENGLLTIDLER 90 (90)
T ss_pred EE--eCCEEEEEEEC
Confidence 65 59999999985
No 20
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.94 E-value=0.0056 Score=50.55 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=68.7
Q ss_pred eEeeecCCeEEEEEeccc---ccCCcceEEEeCcEEEEeec--CceeeecCCCCcccCCCCcceeeCCCc-EEEEEEecc
Q psy5045 6 FELLQSEEDVTIIIKAPY---ANIADTEVYVEDTDFRFSSS--PYYLRLNFPGPIKETDHTSGKYDSDKG-QFTFTVIKV 79 (407)
Q Consensus 6 F~itQd~~fv~I~I~~p~---~~~~~~ei~vd~~~F~F~~~--PYyLRL~fp~~lved~~~~a~Yd~d~g-~~tv~lpKe 79 (407)
|.-+|+.+-|.|.|.+|. ++++++.+.+.-+.+++..+ |++|-=.|.++|.-|+ +.+-.++| .+.|.|-|.
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~~i~G~L~~~V~~de---s~Wtled~~~l~i~L~K~ 77 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEE---SSWLIEDGKVVTVNLEKI 77 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCceEEeCcccCcccccc---cEEEEeCCCEEEEEEEEC
Confidence 345899999999999865 78999999999999999986 6899999999999887 55777665 799999999
Q ss_pred CCCCCCCCC
Q psy5045 80 NTGEHFPDL 88 (407)
Q Consensus 80 ~~Ge~F~dL 88 (407)
++|+..+-|
T Consensus 78 ~~~~wW~~l 86 (87)
T cd06492 78 NKMEWWSRL 86 (87)
T ss_pred CCCcccccc
Confidence 999887754
No 21
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=96.94 E-value=0.0059 Score=50.53 Aligned_cols=73 Identities=19% Similarity=0.412 Sum_probs=57.5
Q ss_pred EeeecCCeEEEEEecccccCCcceEEEeCcEEEEee------------------cCceeeecCCCCcccCCCCcceeeCC
Q psy5045 7 ELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS------------------SPYYLRLNFPGPIKETDHTSGKYDSD 68 (407)
Q Consensus 7 ~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~------------------~PYyLRL~fp~~lved~~~~a~Yd~d 68 (407)
.|.++++++.|.+.+|-+...++.+.++++.....+ .+|.-++.||..+ +.+.-+|+| .
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~v-d~~~i~a~~--~ 77 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDV-DPDKIKASY--E 77 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB--GGG-EEEE--T
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcC-CcceEEEEe--c
Confidence 478999999999999999999999999988766544 3567789999975 556677888 8
Q ss_pred CcEEEEEEeccCCC
Q psy5045 69 KGQFTFTVIKVNTG 82 (407)
Q Consensus 69 ~g~~tv~lpKe~~G 82 (407)
+|.++|++||....
T Consensus 78 ~GvL~I~~pk~~~~ 91 (102)
T PF00011_consen 78 NGVLTITIPKKEEE 91 (102)
T ss_dssp TSEEEEEEEBSSSC
T ss_pred CCEEEEEEEccccc
Confidence 99999999999886
No 22
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=96.90 E-value=0.0035 Score=51.61 Aligned_cols=70 Identities=26% Similarity=0.335 Sum_probs=57.3
Q ss_pred eEeeecCCeEEEEEecccccCCcceEEEeCc-EEEEe--------------------ecCceeeecCCCCcccCCCCcce
Q psy5045 6 FELLQSEEDVTIIIKAPYANIADTEVYVEDT-DFRFS--------------------SSPYYLRLNFPGPIKETDHTSGK 64 (407)
Q Consensus 6 F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~-~F~F~--------------------~~PYyLRL~fp~~lved~~~~a~ 64 (407)
..+..+++.++|.+.+|-++..+++|.++++ ..+.. ...|.-++.||..+- -+..+|+
T Consensus 2 ~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~-~~~i~A~ 80 (92)
T cd06472 2 VDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENAD-ADEVKAF 80 (92)
T ss_pred ccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCC-HHHCEEE
Confidence 4678899999999999999999999999864 44333 347888899999864 4557788
Q ss_pred eeCCCcEEEEEEec
Q psy5045 65 YDSDKGQFTFTVIK 78 (407)
Q Consensus 65 Yd~d~g~~tv~lpK 78 (407)
|+ +|.++|+|||
T Consensus 81 ~~--nGvL~I~lPK 92 (92)
T cd06472 81 LE--NGVLTVTVPK 92 (92)
T ss_pred EE--CCEEEEEecC
Confidence 86 7999999998
No 23
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.89 E-value=0.0071 Score=50.76 Aligned_cols=83 Identities=16% Similarity=0.242 Sum_probs=68.9
Q ss_pred CceeEeeecCCeEEEEEeccc-ccCCcceEEEeCcEEEEeecCc-eeeecCCCCcccCCCCcceeeCCCcE-EEEEEecc
Q psy5045 3 TPMFELLQSEEDVTIIIKAPY-ANIADTEVYVEDTDFRFSSSPY-YLRLNFPGPIKETDHTSGKYDSDKGQ-FTFTVIKV 79 (407)
Q Consensus 3 TP~F~itQd~~fv~I~I~~p~-~~~~~~ei~vd~~~F~F~~~PY-yLRL~fp~~lved~~~~a~Yd~d~g~-~tv~lpKe 79 (407)
|+.+.-+|+.+-|.|.|.+|. ++++++.+.+..+-+++.++.- +|-=.|.++|.-|+ +.+-.+.+. +.|+|.|.
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~~~l~G~L~~~I~~de---stWtled~k~l~I~L~K~ 81 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQEVLKGKLFDSVVADE---CTWTLEDRKLIRIVLTKS 81 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCEEEEcCcccCccCccc---CEEEEECCcEEEEEEEeC
Confidence 788999999999999999776 7899999999999999987632 55557888888877 668887777 79999999
Q ss_pred C--CCCCCCCC
Q psy5045 80 N--TGEHFPDL 88 (407)
Q Consensus 80 ~--~Ge~F~dL 88 (407)
+ +|+-++.|
T Consensus 82 ~~~~~~~W~sl 92 (93)
T cd06494 82 NRDAGNCWKSL 92 (93)
T ss_pred CCCCCcccccc
Confidence 6 55666654
No 24
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=96.79 E-value=0.0069 Score=54.70 Aligned_cols=73 Identities=12% Similarity=0.320 Sum_probs=61.8
Q ss_pred CceeEeee-cCCeEEEEEecccccCCcceEEEeCcEEEEeec------------------CceeeecCCCCcccCCCCcc
Q psy5045 3 TPMFELLQ-SEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS------------------PYYLRLNFPGPIKETDHTSG 63 (407)
Q Consensus 3 TP~F~itQ-d~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~------------------PYyLRL~fp~~lved~~~~a 63 (407)
.|...|.. +++.+.|.+-+|-++-.+++|.|+++..+-... .|.-+++||..|-.+ +|
T Consensus 32 ~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~---~A 108 (142)
T PRK11597 32 FPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS---GA 108 (142)
T ss_pred CCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC---cC
Confidence 48889997 578999999999999999999999998776654 466779999998554 58
Q ss_pred eeeCCCcEEEEEEeccC
Q psy5045 64 KYDSDKGQFTFTVIKVN 80 (407)
Q Consensus 64 ~Yd~d~g~~tv~lpKe~ 80 (407)
+|+ +|.++|+|||..
T Consensus 109 ~~~--nGVL~I~lPK~~ 123 (142)
T PRK11597 109 TFV--NGLLHIDLIRNE 123 (142)
T ss_pred EEc--CCEEEEEEeccC
Confidence 886 999999999974
No 25
>PRK10743 heat shock protein IbpA; Provisional
Probab=96.76 E-value=0.0083 Score=53.78 Aligned_cols=72 Identities=13% Similarity=0.174 Sum_probs=61.1
Q ss_pred ceeEeee-cCCeEEEEEecccccCCcceEEEeCcEEEEee------------------cCceeeecCCCCcccCCCCcce
Q psy5045 4 PMFELLQ-SEEDVTIIIKAPYANIADTEVYVEDTDFRFSS------------------SPYYLRLNFPGPIKETDHTSGK 64 (407)
Q Consensus 4 P~F~itQ-d~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~------------------~PYyLRL~fp~~lved~~~~a~ 64 (407)
|.+.|.. +++.+.|.+-+|-++-.+++|.|+++..+-.. ..|.=+++||..|-.+ +|+
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~---~A~ 111 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVR---GAN 111 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccC---cCE
Confidence 8889985 89999999999999999999999998775443 3566789999999765 388
Q ss_pred eeCCCcEEEEEEeccC
Q psy5045 65 YDSDKGQFTFTVIKVN 80 (407)
Q Consensus 65 Yd~d~g~~tv~lpKe~ 80 (407)
|+ +|.++|+|||..
T Consensus 112 ~~--dGVL~I~lPK~~ 125 (137)
T PRK10743 112 LV--NGLLYIDLERVI 125 (137)
T ss_pred Ee--CCEEEEEEeCCC
Confidence 86 999999999964
No 26
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=96.19 E-value=0.016 Score=47.31 Aligned_cols=70 Identities=10% Similarity=0.155 Sum_probs=55.7
Q ss_pred EeeecCCeEEEEEecccccCCcceEEEeCcEEEEee-------------cCceeeecCCCCcccCCCCcceeeCCCcEEE
Q psy5045 7 ELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-------------SPYYLRLNFPGPIKETDHTSGKYDSDKGQFT 73 (407)
Q Consensus 7 ~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~-------------~PYyLRL~fp~~lved~~~~a~Yd~d~g~~t 73 (407)
+|+-+++.+.|.+.+|-++..+++|.++|+...-+. .-|.-+++||..+ +.+.-+|+|. .+|.++
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~v-d~~~i~A~~~-~dGvL~ 78 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGV-DPAAITSSLS-ADGVLT 78 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCc-ChHHeEEEEC-CCCEEE
Confidence 467889999999999999999999999988765443 3366779999885 4444567763 489999
Q ss_pred EEEec
Q psy5045 74 FTVIK 78 (407)
Q Consensus 74 v~lpK 78 (407)
|++||
T Consensus 79 I~~PK 83 (83)
T cd06478 79 ISGPR 83 (83)
T ss_pred EEecC
Confidence 99998
No 27
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=95.99 E-value=0.019 Score=46.40 Aligned_cols=67 Identities=18% Similarity=0.305 Sum_probs=54.2
Q ss_pred ecCCeEEEEEecccccCCcceEEEeCcEEEEe-------------ecCceeeecCCCCcccCCCCcceeeCCCcEEEEEE
Q psy5045 10 QSEEDVTIIIKAPYANIADTEVYVEDTDFRFS-------------SSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTV 76 (407)
Q Consensus 10 Qd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~-------------~~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~l 76 (407)
.+.+.+.|.+.+|-++..++++.++++...-+ ..-|.-+++||..+ +.+..+|+|+. +|.++|++
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~v-d~~~i~A~~~~-~GvL~I~~ 81 (83)
T cd06526 4 DDDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGV-DPDSVTSSLSS-DGVLTIEA 81 (83)
T ss_pred ccCeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCC-ChHHeEEEeCC-CcEEEEEe
Confidence 34468999999999999999999998865543 45788899999984 55556788875 59999999
Q ss_pred ec
Q psy5045 77 IK 78 (407)
Q Consensus 77 pK 78 (407)
||
T Consensus 82 Pk 83 (83)
T cd06526 82 PK 83 (83)
T ss_pred cC
Confidence 98
No 28
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=95.86 E-value=0.043 Score=45.18 Aligned_cols=79 Identities=16% Similarity=0.341 Sum_probs=56.3
Q ss_pred EeeecCCeEEEEEecccccCCcceEEEeCcE------EEEeecCceeeecCCCCcccCCCCcceeeCCCcEEEEEEeccC
Q psy5045 7 ELLQSEEDVTIIIKAPYANIADTEVYVEDTD------FRFSSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVN 80 (407)
Q Consensus 7 ~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~------F~F~~~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpKe~ 80 (407)
+--|+++.|+|+|.++.....+..+.++... |.|.-+-|.+.+.|-|.|. +..+..+-+-.+.+-|+|.|+.
T Consensus 2 DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~L~~~I~--~~~~~~~~~~~~KVEI~L~K~e 79 (87)
T cd06490 2 DWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILGDKSYLLHLDLSNEVQ--WPCEVRISTETGKIELVLKKKE 79 (87)
T ss_pred CceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECCCceEEEeeeccccCC--CCcEEEEcccCceEEEEEEcCC
Confidence 3469999999999998766666665554433 4444566888999999993 3223344444889999999999
Q ss_pred CCCCCCCC
Q psy5045 81 TGEHFPDL 88 (407)
Q Consensus 81 ~Ge~F~dL 88 (407)
++ .++.|
T Consensus 80 ~~-~W~~L 86 (87)
T cd06490 80 PE-KWTSL 86 (87)
T ss_pred CC-ccccC
Confidence 75 56554
No 29
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=95.77 E-value=0.037 Score=45.54 Aligned_cols=70 Identities=19% Similarity=0.248 Sum_probs=55.8
Q ss_pred EeeecCCeEEEEEecccccCCcceEEEeCcEEEEee-------------cCceeeecCCCCcccCCCCcceeeCCCcEEE
Q psy5045 7 ELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-------------SPYYLRLNFPGPIKETDHTSGKYDSDKGQFT 73 (407)
Q Consensus 7 ~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~-------------~PYyLRL~fp~~lved~~~~a~Yd~d~g~~t 73 (407)
.|.-+++.+.|.+.+|-++..+++|.+.++...-+. +-|.=+++||..+- .+.-+|+|. ++|.++
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd-~~~i~A~~~-~dGvL~ 81 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVD-QSAITCSLS-ADGMLT 81 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCC-hHHeEEEeC-CCCEEE
Confidence 467789999999999999999999999988776544 33666799998854 444566663 489999
Q ss_pred EEEec
Q psy5045 74 FTVIK 78 (407)
Q Consensus 74 v~lpK 78 (407)
|++||
T Consensus 82 I~~PK 86 (86)
T cd06497 82 FSGPK 86 (86)
T ss_pred EEecC
Confidence 99998
No 30
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=95.38 E-value=0.062 Score=44.10 Aligned_cols=70 Identities=7% Similarity=0.095 Sum_probs=55.0
Q ss_pred eeecCCeEEEEEecccccCCcceEEEeCcEEEEee-------------cCceeeecCCCCcccCCCCcceeeCCCcEEEE
Q psy5045 8 LLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-------------SPYYLRLNFPGPIKETDHTSGKYDSDKGQFTF 74 (407)
Q Consensus 8 itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~-------------~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv 74 (407)
++-+++...|.+-+|-++..+++|.|+|+...-+. .-|.=+++||.. ++.+.-+|+|+ ++|.++|
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~-vd~~~i~A~~~-~dGvL~I 79 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPAD-VDPLTITSSLS-PDGVLTV 79 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCC-CChHHcEEEeC-CCCEEEE
Confidence 45567888999999999999999999888665444 447777999988 45556777874 3899999
Q ss_pred EEecc
Q psy5045 75 TVIKV 79 (407)
Q Consensus 75 ~lpKe 79 (407)
++||.
T Consensus 80 ~lPk~ 84 (84)
T cd06498 80 CGPRK 84 (84)
T ss_pred EEeCC
Confidence 99994
No 31
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.77 E-value=0.11 Score=53.09 Aligned_cols=84 Identities=17% Similarity=0.184 Sum_probs=72.6
Q ss_pred ceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEee-----cCceeeecCCCCcccCCCCcceeeCCCcEEEEEEec
Q psy5045 4 PMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-----SPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIK 78 (407)
Q Consensus 4 P~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~-----~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpK 78 (407)
+|+.--|++++|+|.|.+..+...++.+.+.++.+.+.. ++|-|-++|-|.|+-+. ++|.+....|-|+|.|
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~---s~~~v~~~Kiei~l~K 233 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDK---CKYEVLSTKIEIRLAK 233 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccc---cEEEEecceEEEEEec
Confidence 578899999999999999999999999999999887765 47988899999997644 6799998999999999
Q ss_pred cCCCCCCCCCcch
Q psy5045 79 VNTGEHFPDLDLI 91 (407)
Q Consensus 79 e~~Ge~F~dLDm~ 91 (407)
..+ ..++.|..-
T Consensus 234 ~~~-~~W~~L~~~ 245 (356)
T PLN03088 234 AEP-ITWASLEYG 245 (356)
T ss_pred CCC-CCccccccC
Confidence 987 489988643
No 32
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=94.23 E-value=0.35 Score=41.35 Aligned_cols=82 Identities=13% Similarity=0.233 Sum_probs=67.0
Q ss_pred CCceeEeeecCCeEEEEEecccc--cCCcceEEEeCcEEEEeec------CceeeecCCCCcccCCCCcceeeCCCcE-E
Q psy5045 2 LTPMFELLQSEEDVTIIIKAPYA--NIADTEVYVEDTDFRFSSS------PYYLRLNFPGPIKETDHTSGKYDSDKGQ-F 72 (407)
Q Consensus 2 iTP~F~itQd~~fv~I~I~~p~~--~~~~~ei~vd~~~F~F~~~------PYyLRL~fp~~lved~~~~a~Yd~d~g~-~ 72 (407)
.|+.|.-+|+.+-|.|.|.+|.- |++++.+.+..+-.++.++ | +|-=.|.++|.-|+ +.+-.++|. +
T Consensus 3 ~~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~-~i~G~L~~~V~~de---s~Wtled~~~l 78 (102)
T cd06495 3 VRENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKV-LMEGEFTHKINTEN---SLWSLEPGKCV 78 (102)
T ss_pred cCCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCce-EEeCcccCcccCcc---ceEEEeCCCEE
Confidence 47899999999999999999973 6999999999999999995 5 57667899998887 557776654 8
Q ss_pred EEEEeccCCCCCCCCC
Q psy5045 73 TFTVIKVNTGEHFPDL 88 (407)
Q Consensus 73 tv~lpKe~~Ge~F~dL 88 (407)
+|+|-|.+. +.++-|
T Consensus 79 ~I~L~K~~~-~wW~~v 93 (102)
T cd06495 79 LLSLSKCSE-VWWNAV 93 (102)
T ss_pred EEEEEECCC-cccchh
Confidence 999999853 344443
No 33
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=92.76 E-value=0.41 Score=39.25 Aligned_cols=68 Identities=7% Similarity=0.079 Sum_probs=49.7
Q ss_pred eecCCeEEEEEecccccCCcceEEEeCcEEEE-------------eecCceeeecCCCCcccCCCCcceeeCCCcEEEEE
Q psy5045 9 LQSEEDVTIIIKAPYANIADTEVYVEDTDFRF-------------SSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFT 75 (407)
Q Consensus 9 tQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F-------------~~~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~ 75 (407)
.-+++...|.+-+|..+..++++.++|+..+- +...|.-++.||..+-. +.-+|+|. ++|.++|+
T Consensus 3 ~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~-~~v~A~~~-~dGvL~I~ 80 (83)
T cd06476 3 ESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDP-LLVRASLS-HDGILCIQ 80 (83)
T ss_pred eccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCCh-hhEEEEec-CCCEEEEE
Confidence 34677778888888888888888888775543 44456667889988544 44566663 48999999
Q ss_pred Eec
Q psy5045 76 VIK 78 (407)
Q Consensus 76 lpK 78 (407)
+||
T Consensus 81 ~Pr 83 (83)
T cd06476 81 APR 83 (83)
T ss_pred ecC
Confidence 997
No 34
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=91.23 E-value=0.64 Score=38.03 Aligned_cols=69 Identities=9% Similarity=0.187 Sum_probs=54.2
Q ss_pred eeecCCeEEEEEecccccCCcceEEEeCcEEEEeec----------CceeeecCCCCcccCCCCcceeeCCCcEEEEEEe
Q psy5045 8 LLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSS----------PYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVI 77 (407)
Q Consensus 8 itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~----------PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lp 77 (407)
|.-+++.+.|.+-+|.++..++++.|+|+...-+.. .|.=++.||..|-. +.-+|+| .++|.++|+++
T Consensus 3 v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~-e~v~A~l-~~~GvL~I~~~ 80 (81)
T cd06479 3 VKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDP-TSVSSSL-GEDGTLTIKAR 80 (81)
T ss_pred ccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCH-HHeEEEe-cCCCEEEEEec
Confidence 456788999999999999999999999998877763 56667889988544 4455664 25899999987
Q ss_pred c
Q psy5045 78 K 78 (407)
Q Consensus 78 K 78 (407)
+
T Consensus 81 ~ 81 (81)
T cd06479 81 R 81 (81)
T ss_pred C
Confidence 5
No 35
>KOG3158|consensus
Probab=89.29 E-value=1.1 Score=42.17 Aligned_cols=83 Identities=22% Similarity=0.263 Sum_probs=68.5
Q ss_pred CCCceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEeecC------ceeeecCCCCcccCCCCcceeeCCCcEEEE
Q psy5045 1 MLTPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSP------YYLRLNFPGPIKETDHTSGKYDSDKGQFTF 74 (407)
Q Consensus 1 MiTP~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~P------YyLRL~fp~~lved~~~~a~Yd~d~g~~tv 74 (407)
|+-|...--|-.+.|+++|-++-++. .++.++++-|.|.|+- |++.|.|=+.|-- ++.++......+++
T Consensus 5 ~~~p~v~Waqr~~~vyltv~Ved~~d--~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdp---e~sk~k~~~r~if~ 79 (180)
T KOG3158|consen 5 MQPPEVKWAQRRDLVYLTVCVEDAKD--VHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDP---EKSKHKRTSRSIFC 79 (180)
T ss_pred ccCCcchhhhhcCeEEEEEEeccCcc--ceeeccccEEEEEeccCCCceeeEEeeehhhhcCH---hhccccccceEEEE
Confidence 67788888999999999999987765 7889999999999987 8888999888754 34566666777788
Q ss_pred EEeccCCCCCCCCC
Q psy5045 75 TVIKVNTGEHFPDL 88 (407)
Q Consensus 75 ~lpKe~~Ge~F~dL 88 (407)
.+-|...|+.+|-|
T Consensus 80 i~~K~e~~~~WprL 93 (180)
T KOG3158|consen 80 ILRKKELGEYWPRL 93 (180)
T ss_pred EEEccccccccchh
Confidence 88888888998864
No 36
>KOG1309|consensus
Probab=89.14 E-value=1 Score=42.65 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=68.3
Q ss_pred ceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEeecC-----ceeeecCCCCcccCCCCcceeeCCCcEEEEEEec
Q psy5045 4 PMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSP-----YYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIK 78 (407)
Q Consensus 4 P~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~P-----YyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpK 78 (407)
++..--|.+..|+|+|.++.+.-.++.|.+..+...-...= |.|-|.|-|.|+-+. .+|.+=.-.+-|+|+|
T Consensus 4 ~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~---~s~k~~stKVEI~L~K 80 (196)
T KOG1309|consen 4 IRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEK---SSFKVFSTKVEITLAK 80 (196)
T ss_pred ccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccc---eeeEeeeeeEEEEecc
Confidence 46677899999999999999999999999997766555443 999999999999876 5688888899999999
Q ss_pred cCCCCCCCCCc
Q psy5045 79 VNTGEHFPDLD 89 (407)
Q Consensus 79 e~~Ge~F~dLD 89 (407)
..+.-++.|.
T Consensus 81 -~~~irW~~Le 90 (196)
T KOG1309|consen 81 -AEIIRWESLE 90 (196)
T ss_pred -ccchhhhhhh
Confidence 5666776665
No 37
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=88.55 E-value=2.1 Score=35.21 Aligned_cols=69 Identities=12% Similarity=0.156 Sum_probs=51.9
Q ss_pred EeeecCCeEEEEEecccccCCcceEEEeCcEEEEee-------------cCceeeecCCCCcccCCCCcceeeCCCcEEE
Q psy5045 7 ELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS-------------SPYYLRLNFPGPIKETDHTSGKYDSDKGQFT 73 (407)
Q Consensus 7 ~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~-------------~PYyLRL~fp~~lved~~~~a~Yd~d~g~~t 73 (407)
+|-.+++.+.|.+-+|-++..+++|.|+++..+-+. .-|.-+++||..+-.+ +-+|+|. ++|.++
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~-~v~A~~~-~dGvL~ 81 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPT-AVTSSLS-PDGILT 81 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHH-HcEEEEC-CCCeEE
Confidence 467788999999999999999999999887665443 4466677888776543 3455553 378888
Q ss_pred EEEe
Q psy5045 74 FTVI 77 (407)
Q Consensus 74 v~lp 77 (407)
|++|
T Consensus 82 I~lP 85 (86)
T cd06475 82 VEAP 85 (86)
T ss_pred EEec
Confidence 8887
No 38
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=88.04 E-value=1.3 Score=36.43 Aligned_cols=65 Identities=9% Similarity=0.212 Sum_probs=47.7
Q ss_pred CCeEEEEEecccccCCcceEEEeCcEEE-----------------EeecCceeeecCCCCcccCCCCcceeeCCCcEEEE
Q psy5045 12 EEDVTIIIKAPYANIADTEVYVEDTDFR-----------------FSSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTF 74 (407)
Q Consensus 12 ~~fv~I~I~~p~~~~~~~ei~vd~~~F~-----------------F~~~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv 74 (407)
.+.+.|.+.+|-++..+++|.|+++... ++...|.=+++||..|-. +.-+|+|. .+|.++|
T Consensus 6 ~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~-~~i~A~~~-~dGvL~I 83 (87)
T cd06481 6 KEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDP-EAVTCSLS-PSGHLHI 83 (87)
T ss_pred cceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcCh-HHeEEEeC-CCceEEE
Confidence 3677888889999888888888876543 344556777999998544 44556662 5899999
Q ss_pred EEec
Q psy5045 75 TVIK 78 (407)
Q Consensus 75 ~lpK 78 (407)
++|.
T Consensus 84 ~~P~ 87 (87)
T cd06481 84 RAPR 87 (87)
T ss_pred EcCC
Confidence 9983
No 39
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=78.87 E-value=7.7 Score=32.20 Aligned_cols=67 Identities=10% Similarity=0.082 Sum_probs=48.6
Q ss_pred eecCCeEEEEEecccccCCcceEEEeCcEEEEee----------------cCceeeecCCCCcccCCCCcceeeCCCcEE
Q psy5045 9 LQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS----------------SPYYLRLNFPGPIKETDHTSGKYDSDKGQF 72 (407)
Q Consensus 9 tQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~----------------~PYyLRL~fp~~lved~~~~a~Yd~d~g~~ 72 (407)
+-|++.++|.+-+|-++-.+++|.|+++...... ..|.=+++||..| +.+.-+|+|. +.|.+
T Consensus 4 ~~~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~V-d~d~i~A~~~-~~~~l 81 (87)
T cd06482 4 SCDSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGV-DEKDVTYSYG-LGSVV 81 (87)
T ss_pred cccCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCc-ChHHcEEEEc-CCCEE
Confidence 4578889999999999988999999887555444 3345568888884 4455678886 44677
Q ss_pred EEEEe
Q psy5045 73 TFTVI 77 (407)
Q Consensus 73 tv~lp 77 (407)
+|.-|
T Consensus 82 ~i~~~ 86 (87)
T cd06482 82 KIETP 86 (87)
T ss_pred EEeeC
Confidence 77654
No 40
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=70.15 E-value=16 Score=29.97 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=46.3
Q ss_pred cCCeEEEEEecccccCCcceEEEeCcEEEE-------------eecCceeeecCCCCcccCCCCcceeeCCCcEEEEEEe
Q psy5045 11 SEEDVTIIIKAPYANIADTEVYVEDTDFRF-------------SSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVI 77 (407)
Q Consensus 11 d~~fv~I~I~~p~~~~~~~ei~vd~~~F~F-------------~~~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lp 77 (407)
+++...|.+-+|-++..+++|.++|+...- +...+--+++||..|-.+. -+|+|. ++|.++|..|
T Consensus 5 ~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~-v~A~~~-~dGvL~I~~~ 82 (83)
T cd06477 5 GKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKD-LSAMLC-HDGILVVETK 82 (83)
T ss_pred CCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchhe-EEEEEc-CCCEEEEEec
Confidence 457788888899999888888888775543 3345556678888776544 456653 6888888765
No 41
>KOG4317|consensus
Probab=60.14 E-value=6.9 Score=40.06 Aligned_cols=83 Identities=19% Similarity=0.099 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhhheeeecCCCCCccc---cchhhhhccccccccCcCCHHHHHHHhhhhhcccccchhH----HHHH
Q psy5045 267 CAVLLSLVNILYAYCYDVRTTMGEHTVES---GWTVNKLSSALCWLQSFTSLKQVLISSMRRSLCYPLYREW----RLSC 339 (407)
Q Consensus 267 ~~l~l~LvdILfAY~Yd~R~teGe~tvES---~WTI~KLSptLS~ld~~~~l~~vlia~~RRsL~YPLyRnf----~L~~ 339 (407)
.-+-+.|++|||+||+-.+...|....-+ +=++--.|++|--=.+|.+.++++-++.. .++---|.|- ...+
T Consensus 195 pL~~i~lv~ll~~y~~tL~~Yhg~~~s~ls~~caslL~vSs~lg~~~~~~Sa~e~ls~~a~-v~~t~~~~~~~~g~~~~~ 273 (383)
T KOG4317|consen 195 PLCNILLVFLLEFYSLTLFFYHGQWQSMLSSRCASLLLVSSQLGLRRSIQSASEGLSSEAQ-VIDTEQVKNLGGGLKFGL 273 (383)
T ss_pred ccchhhHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHhhHhhhccCchhHHHHHHHHHH-HHhhhhcCCCCccccchh
Confidence 44557899999999999999999854332 44555667777777788899988877654 3444444441 1223
Q ss_pred HHHHHHHHHhh
Q psy5045 340 AIQQDVNTILS 350 (407)
Q Consensus 340 kv~~Dv~~iL~ 350 (407)
--+.|++..+.
T Consensus 274 ~~v~~v~~~~~ 284 (383)
T KOG4317|consen 274 NLVDDVICFLS 284 (383)
T ss_pred hhhhhHhhhhc
Confidence 34555655554
No 42
>COG4703 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.01 E-value=12 Score=30.33 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=28.3
Q ss_pred cceeeCCCcEEEEEEeccCCCCCCCCCcchh
Q psy5045 62 SGKYDSDKGQFTFTVIKVNTGEHFPDLDLIS 92 (407)
Q Consensus 62 ~a~Yd~d~g~~tv~lpKe~~Ge~F~dLDm~t 92 (407)
.-+|-.++++|+++.++....=-|.|.||++
T Consensus 36 eV~ys~~~e~F~lr~~~~~e~y~FD~IDlva 66 (74)
T COG4703 36 EVKYSEDNETFELRDVEDREKYPFDDIDLVA 66 (74)
T ss_pred EEEecCCCceEEEEEcccCccCccccccchh
Confidence 4579999999999999999999999999986
No 43
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=53.89 E-value=97 Score=29.36 Aligned_cols=75 Identities=13% Similarity=0.344 Sum_probs=52.1
Q ss_pred eeEeeecCC-eEEEEEecccccCCc-ceEEEe--CcEEEEeecC-ceeeecCCCCcccCCCCcceeeCCCcEEEEEEecc
Q psy5045 5 MFELLQSEE-DVTIIIKAPYANIAD-TEVYVE--DTDFRFSSSP-YYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKV 79 (407)
Q Consensus 5 ~F~itQd~~-fv~I~I~~p~~~~~~-~ei~vd--~~~F~F~~~P-YyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpKe 79 (407)
...+.+.++ .+.|..-+|-+..-+ +.+.++ ....+-...= |+=|+.||.+.. +..+++| .+|.+.|+|-|.
T Consensus 93 ~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~~~~krv~L~~~~~--e~~~~t~--nNgILEIri~~~ 168 (177)
T PF05455_consen 93 HVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGEKYLKRVALPWPDP--EITSATF--NNGILEIRIRRT 168 (177)
T ss_pred eeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecCCceEeeEecCCCcc--ceeeEEE--eCceEEEEEeec
Confidence 334555444 788999999996555 666666 5555555444 777999998843 3334444 699999999998
Q ss_pred CCCC
Q psy5045 80 NTGE 83 (407)
Q Consensus 80 ~~Ge 83 (407)
..++
T Consensus 169 ~~~~ 172 (177)
T PF05455_consen 169 EESS 172 (177)
T ss_pred CCCC
Confidence 8764
No 44
>PF08796 DUF1797: Protein of unknown function (DUF1797); InterPro: IPR014904 The function of this protein is unknown. It forms a central anti-parallel beta sheet with flanking alpha helical regions. ; PDB: 2FFG_B.
Probab=44.39 E-value=11 Score=30.30 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=26.3
Q ss_pred CcceeeCCCcEEEEEEeccCCCCCCCCCcchh
Q psy5045 61 TSGKYDSDKGQFTFTVIKVNTGEHFPDLDLIS 92 (407)
Q Consensus 61 ~~a~Yd~d~g~~tv~lpKe~~Ge~F~dLDm~t 92 (407)
+.-+||..++.|+++-.....-=.|.|+||++
T Consensus 29 c~V~y~~~t~~F~l~~~~~~~~f~FDdIDLvA 60 (67)
T PF08796_consen 29 CTVTYDQETETFELEEYRQKQKFQFDDIDLVA 60 (67)
T ss_dssp EEEEEETTTTEEEEEEEETTCEEEES-HHHHH
T ss_pred EEEEEECCCCeEEEEEecCCCEeecccccchH
Confidence 35589999999999998877777799999975
No 45
>PF13437 HlyD_3: HlyD family secretion protein
Probab=41.00 E-value=63 Score=26.36 Aligned_cols=70 Identities=14% Similarity=0.240 Sum_probs=47.0
Q ss_pred CceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEeecCceeeecCCCCcccCCCCcceeeCCCcEEEEEEecc
Q psy5045 3 TPMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKV 79 (407)
Q Consensus 3 TP~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpKe 79 (407)
+|-+.|... +.+.|.+.+|...+..+. ..|....+++.++=-+ .++|.|..=.. ..+.+++.+.|++-=.
T Consensus 25 ~~l~~i~~~-~~~~v~~~v~~~~~~~i~--~~g~~v~v~~~~~~~~-~~~g~V~~I~~---~~~~~~~~~~v~~~i~ 94 (105)
T PF13437_consen 25 QPLAEIVDT-DDLWVEAYVPEKDIARIK--DPGQKVTVRLDPGPEK-TIEGKVSSISP---SPDPQGGTYRVEISID 94 (105)
T ss_pred CEEEEEEcc-ceEEEEEEEChHhhcceE--eCCCEEEEEECCCCCc-EEEEEEEEEeC---cccCCCcEEEEEEEEC
Confidence 456666665 778899999888766554 6788888888876444 77777765544 3356666666665433
No 46
>PRK05260 condesin subunit F; Provisional
Probab=27.12 E-value=51 Score=35.05 Aligned_cols=40 Identities=15% Similarity=0.354 Sum_probs=31.5
Q ss_pred cCcCCHHHHHHHhhhhhc---------------------ccccchhHHHHHHHHHHHHHHh
Q psy5045 310 QSFTSLKQVLISSMRRSL---------------------CYPLYREWRLSCAIQQDVNTIL 349 (407)
Q Consensus 310 d~~~~l~~vlia~~RRsL---------------------~YPLyRnf~L~~kv~~Dv~~iL 349 (407)
+.++.+.+-+...+-|+| .||..|||+++..+++-++++=
T Consensus 349 ee~~~l~~~i~~~ve~~L~~~~~~~~pi~L~~vlr~~L~~~P~~~hfdvariivDqavrlg 409 (440)
T PRK05260 349 EEFNEIREQLAALIEEALAVYKEQQGPLDLGLVLREYLAQYPRARHFDVARIVVDQAVRLG 409 (440)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHcCChHhHHHHHHHHHHHHHHHh
Confidence 456667777777777777 7999999999999998887653
No 47
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=26.78 E-value=47 Score=27.06 Aligned_cols=53 Identities=13% Similarity=0.266 Sum_probs=31.5
Q ss_pred cCCeEEEEEeccccc----CC------cceEEEeCcEEEEeecCceeeecCCCCcccCCCCcc
Q psy5045 11 SEEDVTIIIKAPYAN----IA------DTEVYVEDTDFRFSSSPYYLRLNFPGPIKETDHTSG 63 (407)
Q Consensus 11 d~~fv~I~I~~p~~~----~~------~~ei~vd~~~F~F~~~PYyLRL~fp~~lved~~~~a 63 (407)
+++...+.+++|-.- +. +.-+-+....-.=..+|.|+++++|..+..+|....
T Consensus 12 ~~G~~~~~~~lPd~it~w~v~a~a~s~~~~~g~~~~~~~~v~~p~~i~~~lP~~l~~GD~~~i 74 (92)
T PF00207_consen 12 ANGKATFSFTLPDSITSWRVTAFAVSPTGGFGIAEPPEITVFKPFFIQLNLPRSLRRGDQIQI 74 (92)
T ss_dssp TTEEEEEEEE-SSSSSEEEEEEEEEETTTEEEEECCEEEEEB-SEEEEEE--SEEETTSEEEE
T ss_pred CCCEEEEEEECCCCccEEEEEEEEECCCCcceEecceEEEEEeeEEEEcCCCcEEecCCEEEE
Confidence 357888888888752 21 112333333222244699999999999999998754
No 48
>KOG1667|consensus
Probab=25.85 E-value=2.2e+02 Score=28.74 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=50.1
Q ss_pred eEeeecCCeEEEEEecccccCCcceEEEeCcEEEEee------cCceeeecCCCCcccCCCCcceeeCCCcEEEEEEecc
Q psy5045 6 FELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSS------SPYYLRLNFPGPIKETDHTSGKYDSDKGQFTFTVIKV 79 (407)
Q Consensus 6 F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~------~PYyLRL~fp~~lved~~~~a~Yd~d~g~~tv~lpKe 79 (407)
...-|++.+|+|.|++--.--+-..|..+++...-+. +-+=|-+.|=|-|.- + .++--.-.-.+-|+|+|.
T Consensus 217 ~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnv-e--~s~v~m~~tkVEIsl~k~ 293 (320)
T KOG1667|consen 217 HDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNV-E--ESSVVMGETKVEISLKKA 293 (320)
T ss_pred hhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeech-h--hceEEeecceEEEEEecc
Confidence 3456999999999997655433334444444432221 112222233232211 1 112222445678999999
Q ss_pred CCCCCCCCCcchhhhcCC
Q psy5045 80 NTGEHFPDLDLISKLLIP 97 (407)
Q Consensus 80 ~~Ge~F~dLDm~tkLLap 97 (407)
.|| -+..|.+..+|-++
T Consensus 294 ep~-sWa~Le~p~~l~kK 310 (320)
T KOG1667|consen 294 EPG-SWARLEFPPELAKK 310 (320)
T ss_pred CCC-CcccccCCHHHhhh
Confidence 999 78999998885443
No 49
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=23.18 E-value=88 Score=27.54 Aligned_cols=43 Identities=14% Similarity=0.154 Sum_probs=38.0
Q ss_pred ceeEeeecCCeEEEEEecccccCCcceEEEeCcEEEEeecCcee
Q psy5045 4 PMFELLQSEEDVTIIIKAPYANIADTEVYVEDTDFRFSSSPYYL 47 (407)
Q Consensus 4 P~F~itQd~~fv~I~I~~p~~~~~~~ei~vd~~~F~F~~~PYyL 47 (407)
-+|.|+-|...=.|..++...++++..+|+... ..||-+||+-
T Consensus 61 ~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~-e~myPPPy~~ 103 (115)
T cd05721 61 DGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKI-ELMYPPPYYD 103 (115)
T ss_pred CCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEe-eeccCCCEEe
Confidence 478899998888888899999999999999977 7899999986
No 50
>KOG2265|consensus
Probab=21.60 E-value=3.8e+02 Score=25.47 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=47.8
Q ss_pred CceeEeeecCCeEEEEEecc-cc-cCCcceEEEeCcEEEEeec--CceeeecCCCCcccCCCCcceeeCCCcE-EEEEEe
Q psy5045 3 TPMFELLQSEEDVTIIIKAP-YA-NIADTEVYVEDTDFRFSSS--PYYLRLNFPGPIKETDHTSGKYDSDKGQ-FTFTVI 77 (407)
Q Consensus 3 TP~F~itQd~~fv~I~I~~p-~~-~~~~~ei~vd~~~F~F~~~--PYyLRL~fp~~lved~~~~a~Yd~d~g~-~tv~lp 77 (407)
+|.|+-+|+=+-|.|.|.+| .+ ++..+.+.|-.+-..-.++ |=+|-=.|.++|--++ +.+-++.+. +.+.+.
T Consensus 18 ~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~ildG~L~~~vk~de---s~WtiEd~k~i~i~l~ 94 (179)
T KOG2265|consen 18 EEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPILDGELSHSVKVDE---STWTIEDGKMIVILLK 94 (179)
T ss_pred ccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCceecCcccccccccc---ceEEecCCEEEEEEee
Confidence 57899999999999999955 45 7777777777664333322 2233333333333332 456664443 445566
Q ss_pred ccCCCCCC
Q psy5045 78 KVNTGEHF 85 (407)
Q Consensus 78 Ke~~Ge~F 85 (407)
|.+++|-+
T Consensus 95 K~~~~eWW 102 (179)
T KOG2265|consen 95 KSNKMEWW 102 (179)
T ss_pred ccchHHHH
Confidence 66656554
No 51
>PF04398 DUF538: Protein of unknown function, DUF538; InterPro: IPR007493 This family consists of several plant proteins of unknown function.; PDB: 1YDU_A.
Probab=20.85 E-value=62 Score=28.06 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=24.6
Q ss_pred eecCCCCcccCCCCcceeeCCCcEEEEEEeccCCCCCCCC
Q psy5045 48 RLNFPGPIKETDHTSGKYDSDKGQFTFTVIKVNTGEHFPD 87 (407)
Q Consensus 48 RL~fp~~lved~~~~a~Yd~d~g~~tv~lpKe~~Ge~F~d 87 (407)
+..||.-|.-.+-..-++|.++|.|.|++++.-.= +|++
T Consensus 8 ~~glP~GLLP~~v~~y~l~~~tG~f~v~l~~~C~~-~~~~ 46 (110)
T PF04398_consen 8 EYGLPRGLLPLGVTEYGLNRDTGFFWVKLKSPCEF-RFEG 46 (110)
T ss_dssp HHS-TT-TTTSSS-EEEE-TTT-SEEEE-SS-EEE-ESTT
T ss_pred HcCCCCCcCCCCceEEEEecCCcEEEEEecCCEEE-EEEE
Confidence 35688888877777778999999999999986552 5555
No 52
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=20.03 E-value=1.2e+02 Score=24.68 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=20.2
Q ss_pred CceeEeeecCCeEEEEEecccc
Q psy5045 3 TPMFELLQSEEDVTIIIKAPYA 24 (407)
Q Consensus 3 TP~F~itQd~~fv~I~I~~p~~ 24 (407)
-|.|.|+..++.|.|.|+.|..
T Consensus 5 PP~v~v~~~~~~l~V~i~~P~~ 26 (106)
T PF09294_consen 5 PPSVNVSSCGGSLHVTIKPPMT 26 (106)
T ss_dssp SSEEEEEEETTEEEEEEEESEE
T ss_pred CCEEEEEECCCEEEEEEECCCc
Confidence 4999999999999999999983
Done!