RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5045
         (407 letters)



>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 110

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 11/85 (12%)

Query: 10 QSEEDVTIIIKAPYANIADTEVYVEDTDFRFS------SSPYYLRLNFPGPIKETDHTSG 63
             + V I       +  D  V  E +   FS      +  +   ++    I   D    
Sbjct: 10 DRRDYVFIEFCVE--DSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCI---DPNDS 64

Query: 64 KYDSDKGQFTFTVIKVNTGEHFPDL 88
          K+          + K  +G+ +P L
Sbjct: 65 KHKRTDRSILCCLRKGESGQSWPRL 89


>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3
           (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 124

 Score = 29.6 bits (66), Expect = 0.25
 Identities = 7/86 (8%), Positives = 20/86 (23%), Gaps = 10/86 (11%)

Query: 10  QSEEDVTIIIKAPYANIADTEVYVEDTDFRFS-------SSPYYLRLNFPGPIKETDHTS 62
           Q   D+ + +  P   +   +V V  +                 +       I       
Sbjct: 26  QDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSL- 84

Query: 63  GKYDSDKGQFTFTVIKVNTGEHFPDL 88
             +  + G+     +       +  +
Sbjct: 85  --WSLEPGKCVLVNLSKVGEYWWNAI 108


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog,
          gst1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 28.8 bits (64), Expect = 0.30
 Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 9/85 (10%)

Query: 10 QSEEDVTIIIKAPYANIADTEVYVEDTDFRFS-----SSPYYLRLNFPGPIKETDHTSGK 64
          Q+E  V I +        D  V   + +            Y L+L    PI         
Sbjct: 9  QTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPI---IPEQST 65

Query: 65 YDSDKGQFTFTVIKVNTGEHFPDLD 89
          +     +    + K      +  L+
Sbjct: 66 FKVLSTKIEIKLKKPE-AVRWEKLE 89


>d1kkga_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Escherichia
           coli [TaxId: 562]}
          Length = 108

 Score = 26.4 bits (58), Expect = 2.6
 Identities = 10/41 (24%), Positives = 23/41 (56%)

Query: 333 REWRLSCAIQQDVNTILSQDILGYKVMKQVTISKSDLGFDL 373
           R  R++  +Q+++  IL ++I   ++    T+S  ++  DL
Sbjct: 7   RPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDL 47


>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit
           {Thermotoga maritima [TaxId: 2336]}
          Length = 120

 Score = 25.8 bits (56), Expect = 5.6
 Identities = 6/25 (24%), Positives = 15/25 (60%), Gaps = 3/25 (12%)

Query: 162 MKVTISKSDLGFDLEELETAARIVE 186
           MKVT++  +L    +++  A++ + 
Sbjct: 1   MKVTVTTLEL---KDKITIASKALA 22


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,452,043
Number of extensions: 65303
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 8
Length of query: 407
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 320
Effective length of database: 1,213,086
Effective search space: 388187520
Effective search space used: 388187520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)