Query psy5046
Match_columns 94
No_of_seqs 108 out of 169
Neff 5.4
Searched_HMMs 46136
Date Sat Aug 17 00:22:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5046.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5046hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2931|consensus 100.0 3.2E-37 6.9E-42 239.4 8.4 88 2-93 201-288 (326)
2 PF03096 Ndr: Ndr family; Int 100.0 1.7E-35 3.6E-40 227.8 7.0 84 2-93 178-261 (283)
3 TIGR01738 bioH putative pimelo 96.0 0.02 4.2E-07 39.0 5.4 44 47-92 184-229 (245)
4 TIGR03343 biphenyl_bphD 2-hydr 96.0 0.02 4.4E-07 41.2 5.7 45 46-92 218-264 (282)
5 PRK11126 2-succinyl-6-hydroxy- 95.7 0.029 6.4E-07 39.5 5.4 40 46-91 183-222 (242)
6 PRK10349 carboxylesterase BioH 95.2 0.053 1.1E-06 38.9 5.2 44 46-91 191-236 (256)
7 PRK07581 hypothetical protein; 94.6 0.083 1.8E-06 39.9 5.1 44 46-91 270-316 (339)
8 PRK08775 homoserine O-acetyltr 94.5 0.17 3.8E-06 38.5 6.7 43 47-90 273-318 (343)
9 TIGR03695 menH_SHCHC 2-succiny 94.4 0.13 2.7E-06 34.8 5.2 43 47-91 190-233 (251)
10 TIGR02427 protocat_pcaD 3-oxoa 94.4 0.21 4.6E-06 33.8 6.4 42 47-90 189-232 (251)
11 PLN02824 hydrolase, alpha/beta 94.4 0.082 1.8E-06 38.8 4.5 45 46-92 229-275 (294)
12 PHA02857 monoglyceride lipase; 93.9 0.068 1.5E-06 38.7 3.3 46 46-92 204-251 (276)
13 PRK10673 acyl-CoA esterase; Pr 93.4 0.11 2.4E-06 36.7 3.6 43 47-90 191-234 (255)
14 KOG1454|consensus 93.2 0.09 1.9E-06 41.0 3.1 45 46-92 258-305 (326)
15 PLN02385 hydrolase; alpha/beta 92.9 0.092 2E-06 40.1 2.8 45 47-91 275-321 (349)
16 PLN02894 hydrolase, alpha/beta 92.7 0.24 5.3E-06 39.2 4.9 45 47-92 321-366 (402)
17 PRK03592 haloalkane dehalogena 91.9 0.11 2.4E-06 38.1 2.0 45 47-92 224-270 (295)
18 PRK06489 hypothetical protein; 91.4 0.41 8.8E-06 36.8 4.7 41 46-88 287-331 (360)
19 PLN02980 2-oxoglutarate decarb 90.5 0.7 1.5E-05 43.3 6.1 46 46-91 1563-1619(1655)
20 TIGR01250 pro_imino_pep_2 prol 90.5 0.26 5.6E-06 34.4 2.6 45 46-92 226-271 (288)
21 PLN02298 hydrolase, alpha/beta 90.3 0.27 5.9E-06 36.9 2.8 45 47-91 247-293 (330)
22 PLN02679 hydrolase, alpha/beta 90.2 0.93 2E-05 35.1 5.8 44 47-92 288-338 (360)
23 TIGR03611 RutD pyrimidine util 90.2 0.36 7.9E-06 33.2 3.2 44 46-91 193-238 (257)
24 PF12697 Abhydrolase_6: Alpha/ 90.2 0.31 6.7E-06 32.3 2.8 44 46-91 171-216 (228)
25 PLN02578 hydrolase 89.4 1.1 2.5E-05 34.4 5.6 42 47-91 292-335 (354)
26 PLN02511 hydrolase 89.3 0.48 1E-05 37.3 3.6 43 46-90 293-338 (388)
27 TIGR03056 bchO_mg_che_rel puta 89.1 0.51 1.1E-05 33.3 3.3 43 46-90 215-259 (278)
28 PLN03087 BODYGUARD 1 domain co 88.5 0.47 1E-05 39.3 3.1 41 49-91 416-458 (481)
29 PRK00870 haloalkane dehalogena 87.8 0.54 1.2E-05 34.8 2.8 45 47-91 235-281 (302)
30 TIGR01249 pro_imino_pep_1 prol 85.0 1.1 2.4E-05 33.5 3.3 43 47-91 243-288 (306)
31 PRK10985 putative hydrolase; P 84.4 1 2.2E-05 34.2 2.9 43 47-90 251-294 (324)
32 PF12695 Abhydrolase_5: Alpha/ 83.9 1 2.2E-05 28.9 2.4 42 47-89 100-143 (145)
33 PRK03204 haloalkane dehalogena 83.3 1.2 2.6E-05 33.1 2.8 41 51-92 227-269 (286)
34 PLN03084 alpha/beta hydrolase 83.1 1.5 3.3E-05 34.9 3.5 42 48-92 322-365 (383)
35 COG0596 MhpC Predicted hydrola 82.6 2.3 5E-05 27.9 3.7 44 47-91 217-262 (282)
36 PLN02965 Probable pheophorbida 82.4 1.6 3.5E-05 31.4 3.1 43 47-91 189-233 (255)
37 PRK00175 metX homoserine O-ace 82.3 0.93 2E-05 35.4 2.0 45 47-91 305-354 (379)
38 TIGR02240 PHA_depoly_arom poly 82.0 1.4 3.1E-05 32.0 2.8 41 47-90 203-245 (276)
39 PRK10749 lysophospholipase L2; 81.6 1.4 3E-05 33.5 2.6 46 47-92 255-307 (330)
40 PRK06765 homoserine O-acetyltr 80.3 4.8 0.0001 32.1 5.4 45 46-90 318-367 (389)
41 PLN02652 hydrolase; alpha/beta 78.6 2.5 5.5E-05 33.7 3.3 45 46-90 319-365 (395)
42 KOG2984|consensus 78.5 2 4.4E-05 33.2 2.6 37 26-67 196-232 (277)
43 PF00561 Abhydrolase_1: alpha/ 78.3 2.7 5.7E-05 28.5 3.0 42 47-90 171-214 (230)
44 KOG4178|consensus 77.7 1.7 3.8E-05 34.7 2.2 65 27-92 235-301 (322)
45 cd08816 CARD_RIG-I_1 Caspase a 76.2 4.9 0.00011 26.7 3.6 28 4-31 6-33 (89)
46 PRK14875 acetoin dehydrogenase 73.5 9.4 0.0002 28.5 5.1 42 47-91 310-351 (371)
47 TIGR01392 homoserO_Ac_trn homo 72.6 2.4 5.2E-05 32.4 1.7 45 46-90 283-332 (351)
48 PRK13604 luxD acyl transferase 70.2 5.1 0.00011 31.6 3.1 44 46-89 197-242 (307)
49 PRK10566 esterase; Provisional 64.9 5.4 0.00012 28.3 2.1 43 47-89 181-230 (249)
50 PF00326 Peptidase_S9: Prolyl 63.0 4.1 8.9E-05 28.5 1.2 40 50-89 143-186 (213)
51 TIGR01838 PHA_synth_I poly(R)- 59.5 11 0.00024 31.7 3.3 44 45-90 409-454 (532)
52 KOG2382|consensus 59.3 20 0.00044 28.5 4.6 70 16-93 225-295 (315)
53 PLN02872 triacylglycerol lipas 56.1 60 0.0013 26.1 6.9 43 47-90 319-365 (395)
54 TIGR03100 hydr1_PEP hydrolase, 55.5 7.6 0.00016 28.8 1.6 46 47-92 203-255 (274)
55 PF02197 RIIa: Regulatory subu 54.6 13 0.00029 20.4 2.1 27 3-30 4-30 (38)
56 TIGR01607 PST-A Plasmodium sub 51.2 21 0.00045 27.4 3.4 40 51-90 270-311 (332)
57 PRK05077 frsA fermentation/res 50.9 19 0.00041 28.8 3.2 39 48-88 352-392 (414)
58 PF02273 Acyl_transf_2: Acyl t 50.9 22 0.00047 28.2 3.5 43 47-89 191-235 (294)
59 PF07859 Abhydrolase_3: alpha/ 47.8 29 0.00062 23.9 3.4 71 17-88 132-205 (211)
60 COG1506 DAP2 Dipeptidyl aminop 47.6 14 0.0003 31.1 2.1 44 46-89 546-593 (620)
61 PF08840 BAAT_C: BAAT / Acyl-C 45.3 10 0.00022 27.6 0.8 46 47-92 111-163 (213)
62 TIGR01836 PHA_synth_III_C poly 44.7 26 0.00057 26.7 3.1 40 46-85 281-322 (350)
63 KOG4409|consensus 44.2 12 0.00026 30.5 1.2 46 47-92 297-345 (365)
64 PRK07868 acyl-CoA synthetase; 43.8 30 0.00064 30.8 3.6 43 46-90 292-337 (994)
65 PF09119 SicP-binding: SicP bi 43.0 25 0.00055 22.9 2.3 34 2-36 21-54 (81)
66 PF03946 Ribosomal_L11_N: Ribo 42.4 22 0.00049 21.5 1.9 28 20-58 26-54 (60)
67 PF04189 Gcd10p: Gcd10p family 37.0 13 0.00029 29.1 0.4 16 79-94 202-217 (299)
68 KOG1552|consensus 36.7 24 0.00053 27.4 1.8 19 47-65 188-206 (258)
69 COG2267 PldB Lysophospholipase 35.9 57 0.0012 24.9 3.7 43 47-89 224-269 (298)
70 CHL00127 rpl11 ribosomal prote 34.2 24 0.00052 24.9 1.3 28 20-58 33-60 (140)
71 PF03959 FSH1: Serine hydrolas 33.4 17 0.00037 26.1 0.5 37 48-85 158-196 (212)
72 PRK15117 ABC transporter perip 32.8 33 0.00071 25.3 1.9 38 3-40 171-208 (211)
73 PF08386 Abhydrolase_4: TAP-li 32.1 63 0.0014 20.8 3.0 37 51-89 34-72 (103)
74 KOG0584|consensus 31.5 1.1E+02 0.0023 26.9 4.9 49 6-63 130-184 (632)
75 PTZ00105 60S ribosomal protein 31.5 27 0.00058 24.6 1.2 28 20-58 12-39 (140)
76 PRK05855 short chain dehydroge 31.4 35 0.00076 27.1 1.9 20 47-66 229-248 (582)
77 KOG2355|consensus 31.1 31 0.00068 27.0 1.6 36 53-88 68-103 (291)
78 PF01738 DLH: Dienelactone hyd 31.1 50 0.0011 23.1 2.5 42 47-88 141-186 (218)
79 PF11176 DUF2962: Protein of u 29.4 52 0.0011 23.3 2.4 35 4-38 49-87 (155)
80 COG0080 RplK Ribosomal protein 27.9 45 0.00097 23.8 1.8 34 20-64 32-65 (141)
81 KOG0309|consensus 27.3 1.1E+02 0.0023 28.1 4.3 71 2-84 940-1019(1081)
82 PF08916 Phe_ZIP: Phenylalanin 26.3 96 0.0021 19.0 2.8 17 3-21 16-32 (59)
83 smart00649 RL11 Ribosomal prot 26.3 40 0.00088 23.4 1.3 28 20-58 25-52 (132)
84 COG3571 Predicted hydrolase of 26.2 76 0.0016 23.9 2.8 41 44-84 135-176 (213)
85 cd08785 CARD_CARD9-like Caspas 26.1 1.1E+02 0.0024 19.7 3.3 25 4-28 3-27 (86)
86 PF14193 DUF4315: Domain of un 25.3 1.1E+02 0.0024 19.8 3.1 27 2-31 36-62 (83)
87 PRK10162 acetyl esterase; Prov 24.8 1.4E+02 0.003 22.7 4.2 72 17-88 213-287 (318)
88 PF11302 DUF3104: Protein of u 22.8 72 0.0016 20.5 1.9 27 62-88 27-54 (75)
89 PF09227 DUF1962: Domain of un 22.4 44 0.00096 20.6 0.8 12 80-91 41-52 (64)
90 smart00394 RIIa RIIalpha, Regu 22.3 92 0.002 16.6 2.0 27 4-31 5-31 (38)
91 PRK00945 acetyl-CoA decarbonyl 21.7 69 0.0015 23.3 1.8 30 51-80 108-137 (171)
92 COG4261 Predicted acyltransfer 21.4 46 0.001 26.4 0.9 13 48-60 230-242 (309)
93 COG4790 EscR Type III secretor 21.0 1.2E+02 0.0026 23.1 3.0 29 6-34 96-124 (214)
94 PF08494 DEAD_assoc: DEAD/H as 20.2 1.8E+02 0.0039 20.8 3.8 26 5-30 145-170 (187)
95 PF02260 FATC: FATC domain; I 20.1 68 0.0015 17.1 1.2 18 7-24 7-24 (33)
96 PRK00140 rplK 50S ribosomal pr 20.1 60 0.0013 22.8 1.2 28 20-58 33-60 (141)
No 1
>KOG2931|consensus
Probab=100.00 E-value=3.2e-37 Score=239.36 Aligned_cols=88 Identities=39% Similarity=0.562 Sum_probs=84.5
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHccccCCcccccccccCCCcccccceEEEccCCCCCccchhhhcccCCCCcee
Q psy5046 2 GPHLVDGRRSYFEQCVNPINLALFIDAYIRRTDLNISRDLENRTCTQTLGMPVMNITGAFSPHVDDTVILNSRLDPTSSS 81 (94)
Q Consensus 2 n~dlv~~yr~~l~~~~N~~Nl~~fi~sy~~R~DL~i~r~~~~~~~~~~Lkc~vLlvvG~~Sp~~~~vv~~ns~ldp~ktt 81 (94)
|+||||+||++|.+.+||.||++||+||++|+||+|+|+..+ .|||||||||||++|||+++|||||++|||++||
T Consensus 201 ~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn~R~DL~~~r~~~~----~tlkc~vllvvGd~Sp~~~~vv~~n~~Ldp~~tt 276 (326)
T KOG2931|consen 201 NSDIVQEYRQHLGERLNPKNLALFLNAYNGRRDLSIERPKLG----TTLKCPVLLVVGDNSPHVSAVVECNSKLDPTYTT 276 (326)
T ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCccccCCCcC----ccccccEEEEecCCCchhhhhhhhhcccCcccce
Confidence 799999999999999999999999999999999999998753 2999999999999999999999999999999999
Q ss_pred eEEecCCccccc
Q psy5046 82 WMKSCSCVSSSL 93 (94)
Q Consensus 82 llkv~dcG~lv~ 93 (94)
||||+||||++.
T Consensus 277 llk~~d~g~l~~ 288 (326)
T KOG2931|consen 277 LLKMADCGGLVQ 288 (326)
T ss_pred EEEEcccCCccc
Confidence 999999999984
No 2
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=100.00 E-value=1.7e-35 Score=227.79 Aligned_cols=84 Identities=45% Similarity=0.749 Sum_probs=69.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHccccCCcccccccccCCCcccccceEEEccCCCCCccchhhhcccCCCCcee
Q psy5046 2 GPHLVDGRRSYFEQCVNPINLALFIDAYIRRTDLNISRDLENRTCTQTLGMPVMNITGAFSPHVDDTVILNSRLDPTSSS 81 (94)
Q Consensus 2 n~dlv~~yr~~l~~~~N~~Nl~~fi~sy~~R~DL~i~r~~~~~~~~~~Lkc~vLlvvG~~Sp~~~~vv~~ns~ldp~ktt 81 (94)
|+|++|+||++|.+.+||.||++||+||++|+||+++|+ .+.||||||||++|||++++|+||+||||+|||
T Consensus 178 n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~--------~~~c~vLlvvG~~Sp~~~~vv~~ns~Ldp~~tt 249 (283)
T PF03096_consen 178 NSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERP--------SLGCPVLLVVGDNSPHVDDVVEMNSKLDPTKTT 249 (283)
T ss_dssp T-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECT--------TCCS-EEEEEETTSTTHHHHHHHHHHS-CCCEE
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcC--------CCCCCeEEEEecCCcchhhHHHHHhhcCcccce
Confidence 799999999999999999999999999999999999986 345999999999999999999999999999999
Q ss_pred eEEecCCccccc
Q psy5046 82 WMKSCSCVSSSL 93 (94)
Q Consensus 82 llkv~dcG~lv~ 93 (94)
||||+||||+|+
T Consensus 250 llkv~dcGglV~ 261 (283)
T PF03096_consen 250 LLKVADCGGLVL 261 (283)
T ss_dssp EEEETT-TT-HH
T ss_pred EEEecccCCccc
Confidence 999999999986
No 3
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=96.04 E-value=0.02 Score=38.99 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=32.7
Q ss_pred CcccccceEEEccCCCCCcc--chhhhcccCCCCceeeEEecCCcccc
Q psy5046 47 TQTLGMPVMNITGAFSPHVD--DTVILNSRLDPTSSSWMKSCSCVSSS 92 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~--~vv~~ns~ldp~kttllkv~dcG~lv 92 (94)
+++++||||+|.|+..+.+. ....+...+ | ..++..+++||=++
T Consensus 184 l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~-~-~~~~~~~~~~gH~~ 229 (245)
T TIGR01738 184 LQNISVPFLRLYGYLDGLVPAKVVPYLDKLA-P-HSELYIFAKAAHAP 229 (245)
T ss_pred HhcCCCCEEEEeecCCcccCHHHHHHHHHhC-C-CCeEEEeCCCCCCc
Confidence 56889999999999998874 334455555 3 56788899998543
No 4
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=96.03 E-value=0.02 Score=41.19 Aligned_cols=45 Identities=11% Similarity=0.035 Sum_probs=34.1
Q ss_pred CCcccccceEEEccCCCCCcc--chhhhcccCCCCceeeEEecCCcccc
Q psy5046 46 CTQTLGMPVMNITGAFSPHVD--DTVILNSRLDPTSSSWMKSCSCVSSS 92 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp~~~--~vv~~ns~ldp~kttllkv~dcG~lv 92 (94)
.++.++||+|+++|+.++.+. ...++.+++ | .+++..+++||=++
T Consensus 218 ~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~-~-~~~~~~i~~agH~~ 264 (282)
T TIGR03343 218 RLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNM-P-DAQLHVFSRCGHWA 264 (282)
T ss_pred HHhhCCCCEEEEEccCCCcCCchhHHHHHHhC-C-CCEEEEeCCCCcCC
Confidence 367889999999999999874 444555555 3 57788899998543
No 5
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=95.74 E-value=0.029 Score=39.46 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=29.7
Q ss_pred CCcccccceEEEccCCCCCccchhhhcccCCCCceeeEEecCCccc
Q psy5046 46 CTQTLGMPVMNITGAFSPHVDDTVILNSRLDPTSSSWMKSCSCVSS 91 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp~~~~vv~~ns~ldp~kttllkv~dcG~l 91 (94)
.+++++||+|+|.|+..+.... +-.+. .+++..+++||=+
T Consensus 183 ~l~~i~~P~lii~G~~D~~~~~---~~~~~---~~~~~~i~~~gH~ 222 (242)
T PRK11126 183 ALQALTFPFYYLCGERDSKFQA---LAQQL---ALPLHVIPNAGHN 222 (242)
T ss_pred HhhccCCCeEEEEeCCcchHHH---HHHHh---cCeEEEeCCCCCc
Confidence 3678999999999999985532 22222 5889999999854
No 6
>PRK10349 carboxylesterase BioH; Provisional
Probab=95.17 E-value=0.053 Score=38.86 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=31.6
Q ss_pred CCcccccceEEEccCCCCCcc--chhhhcccCCCCceeeEEecCCccc
Q psy5046 46 CTQTLGMPVMNITGAFSPHVD--DTVILNSRLDPTSSSWMKSCSCVSS 91 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp~~~--~vv~~ns~ldp~kttllkv~dcG~l 91 (94)
.+++++||||+++|+..+... .+..+...+ ..+.+..+++||=+
T Consensus 191 ~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i--~~~~~~~i~~~gH~ 236 (256)
T PRK10349 191 PLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLW--PHSESYIFAKAAHA 236 (256)
T ss_pred HHhhcCCCeEEEecCCCccCCHHHHHHHHHhC--CCCeEEEeCCCCCC
Confidence 367899999999999998652 223333433 36688999999954
No 7
>PRK07581 hypothetical protein; Validated
Probab=94.58 E-value=0.083 Score=39.90 Aligned_cols=44 Identities=7% Similarity=-0.053 Sum_probs=32.6
Q ss_pred CCcccccceEEEccCCCCCc--cchhhhcccCCCCceeeEEecC-Cccc
Q psy5046 46 CTQTLGMPVMNITGAFSPHV--DDTVILNSRLDPTSSSWMKSCS-CVSS 91 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp~~--~~vv~~ns~ldp~kttllkv~d-cG~l 91 (94)
.++.++||||+|+|+..+.. +....+...+ |. +++..+++ ||=+
T Consensus 270 ~L~~I~~PtLvI~G~~D~~~p~~~~~~l~~~i-p~-a~l~~i~~~~GH~ 316 (339)
T PRK07581 270 ALGSITAKTFVMPISTDLYFPPEDCEAEAALI-PN-AELRPIESIWGHL 316 (339)
T ss_pred HHhcCCCCEEEEEeCCCCCCCHHHHHHHHHhC-CC-CeEEEeCCCCCcc
Confidence 36678999999999998766 3455566655 33 68888998 8843
No 8
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=94.47 E-value=0.17 Score=38.53 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=33.1
Q ss_pred CcccccceEEEccCCCCCc--cchhhhcccCCCCceeeEEecC-Ccc
Q psy5046 47 TQTLGMPVMNITGAFSPHV--DDTVILNSRLDPTSSSWMKSCS-CVS 90 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~--~~vv~~ns~ldp~kttllkv~d-cG~ 90 (94)
++.++||+|+|.|+..... ++..++...+-| .+.+..+++ ||=
T Consensus 273 l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p-~a~l~~i~~~aGH 318 (343)
T PRK08775 273 PEAIRVPTVVVAVEGDRLVPLADLVELAEGLGP-RGSLRVLRSPYGH 318 (343)
T ss_pred hhcCCCCeEEEEeCCCEeeCHHHHHHHHHHcCC-CCeEEEEeCCccH
Confidence 4678999999999999765 456777777765 367888874 873
No 9
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=94.40 E-value=0.13 Score=34.76 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=30.7
Q ss_pred CcccccceEEEccCCCCCccc-hhhhcccCCCCceeeEEecCCccc
Q psy5046 47 TQTLGMPVMNITGAFSPHVDD-TVILNSRLDPTSSSWMKSCSCVSS 91 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~~-vv~~ns~ldp~kttllkv~dcG~l 91 (94)
++.++||+|++.|+..+...+ ...+..+.. ..++..+++||=.
T Consensus 190 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~--~~~~~~~~~~gH~ 233 (251)
T TIGR03695 190 LQALTIPVLYLCGEKDEKFVQIAKEMQKLLP--NLTLVIIANAGHN 233 (251)
T ss_pred hhCCCCceEEEeeCcchHHHHHHHHHHhcCC--CCcEEEEcCCCCC
Confidence 567899999999999976543 333455443 4678888888754
No 10
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=94.39 E-value=0.21 Score=33.85 Aligned_cols=42 Identities=7% Similarity=0.082 Sum_probs=31.0
Q ss_pred CcccccceEEEccCCCCCcc--chhhhcccCCCCceeeEEecCCcc
Q psy5046 47 TQTLGMPVMNITGAFSPHVD--DTVILNSRLDPTSSSWMKSCSCVS 90 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~--~vv~~ns~ldp~kttllkv~dcG~ 90 (94)
+++++||+|++.|+..+... .+.++...+. ..++.+++++|=
T Consensus 189 ~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~gH 232 (251)
T TIGR02427 189 LGAIAVPTLCIAGDQDGSTPPELVREIADLVP--GARFAEIRGAGH 232 (251)
T ss_pred hhhcCCCeEEEEeccCCcCChHHHHHHHHhCC--CceEEEECCCCC
Confidence 56789999999999998874 3344555552 467888988873
No 11
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=94.35 E-value=0.082 Score=38.81 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=31.9
Q ss_pred CCcccccceEEEccCCCCCccc--hhhhcccCCCCceeeEEecCCcccc
Q psy5046 46 CTQTLGMPVMNITGAFSPHVDD--TVILNSRLDPTSSSWMKSCSCVSSS 92 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp~~~~--vv~~ns~ldp~kttllkv~dcG~lv 92 (94)
.+.+++||+|+|.|+..+.... ...++. +-| ..++..+++||=++
T Consensus 229 ~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~-~~~-~~~~~~i~~~gH~~ 275 (294)
T PLN02824 229 LLPAVKCPVLIAWGEKDPWEPVELGRAYAN-FDA-VEDFIVLPGVGHCP 275 (294)
T ss_pred HHhhcCCCeEEEEecCCCCCChHHHHHHHh-cCC-ccceEEeCCCCCCh
Confidence 3678899999999999987732 333444 333 35788999998543
No 12
>PHA02857 monoglyceride lipase; Provisional
Probab=93.91 E-value=0.068 Score=38.71 Aligned_cols=46 Identities=4% Similarity=-0.002 Sum_probs=36.2
Q ss_pred CCcccccceEEEccCCCCCc--cchhhhcccCCCCceeeEEecCCcccc
Q psy5046 46 CTQTLGMPVMNITGAFSPHV--DDTVILNSRLDPTSSSWMKSCSCVSSS 92 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp~~--~~vv~~ns~ldp~kttllkv~dcG~lv 92 (94)
.++.++||+|+|.|+..+.. +.+.++..++-+ +.++..+++||=.+
T Consensus 204 ~l~~i~~Pvliv~G~~D~i~~~~~~~~l~~~~~~-~~~~~~~~~~gH~~ 251 (276)
T PHA02857 204 IIPKIKTPILILQGTNNEISDVSGAYYFMQHANC-NREIKIYEGAKHHL 251 (276)
T ss_pred hcccCCCCEEEEecCCCCcCChHHHHHHHHHccC-CceEEEeCCCcccc
Confidence 36688999999999999877 466677677755 67888899998543
No 13
>PRK10673 acyl-CoA esterase; Provisional
Probab=93.42 E-value=0.11 Score=36.72 Aligned_cols=43 Identities=16% Similarity=-0.022 Sum_probs=30.3
Q ss_pred CcccccceEEEccCCCCCcc-chhhhcccCCCCceeeEEecCCcc
Q psy5046 47 TQTLGMPVMNITGAFSPHVD-DTVILNSRLDPTSSSWMKSCSCVS 90 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~-~vv~~ns~ldp~kttllkv~dcG~ 90 (94)
++.++||+|+|.|+.++.+. +..+.-.+.-| +.++..+++||=
T Consensus 191 ~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~gH 234 (255)
T PRK10673 191 IPAWPHPALFIRGGNSPYVTEAYRDDLLAQFP-QARAHVIAGAGH 234 (255)
T ss_pred cCCCCCCeEEEECCCCCCCCHHHHHHHHHhCC-CcEEEEeCCCCC
Confidence 56789999999999998773 33332233444 367788899984
No 14
>KOG1454|consensus
Probab=93.22 E-value=0.09 Score=41.05 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=35.4
Q ss_pred CCcccc-cceEEEccCCCCCcc--chhhhcccCCCCceeeEEecCCcccc
Q psy5046 46 CTQTLG-MPVMNITGAFSPHVD--DTVILNSRLDPTSSSWMKSCSCVSSS 92 (94)
Q Consensus 46 ~~~~Lk-c~vLlvvG~~Sp~~~--~vv~~ns~ldp~kttllkv~dcG~lv 92 (94)
.++.+. ||+|++.|+.+++.. .+..+-+++ ....+..|++||=.+
T Consensus 258 ~~~~i~~~pvlii~G~~D~~~p~~~~~~~~~~~--pn~~~~~I~~~gH~~ 305 (326)
T KOG1454|consen 258 LIKKIWKCPVLIIWGDKDQIVPLELAEELKKKL--PNAELVEIPGAGHLP 305 (326)
T ss_pred hhccccCCceEEEEcCcCCccCHHHHHHHHhhC--CCceEEEeCCCCccc
Confidence 356665 999999999999984 456666666 788999999999543
No 15
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=92.94 E-value=0.092 Score=40.08 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=34.6
Q ss_pred CcccccceEEEccCCCCCcc--chhhhcccCCCCceeeEEecCCccc
Q psy5046 47 TQTLGMPVMNITGAFSPHVD--DTVILNSRLDPTSSSWMKSCSCVSS 91 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~--~vv~~ns~ldp~kttllkv~dcG~l 91 (94)
+..++||+|+|+|+..+.++ .+.++..++.....++..+++||=.
T Consensus 275 l~~i~~P~Lii~G~~D~vv~~~~~~~l~~~~~~~~~~l~~i~~~gH~ 321 (349)
T PLN02385 275 LEEVSLPLLILHGEADKVTDPSVSKFLYEKASSSDKKLKLYEDAYHS 321 (349)
T ss_pred cccCCCCEEEEEeCCCCccChHHHHHHHHHcCCCCceEEEeCCCeee
Confidence 56789999999999998774 4566677775445678889999843
No 16
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=92.69 E-value=0.24 Score=39.22 Aligned_cols=45 Identities=11% Similarity=0.022 Sum_probs=31.9
Q ss_pred CcccccceEEEccCCCCCccc-hhhhcccCCCCceeeEEecCCcccc
Q psy5046 47 TQTLGMPVMNITGAFSPHVDD-TVILNSRLDPTSSSWMKSCSCVSSS 92 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~~-vv~~ns~ldp~kttllkv~dcG~lv 92 (94)
++.++||+|+++|+.++.... ..++...+ +....+..+++||=.+
T Consensus 321 l~~I~vP~liI~G~~D~i~~~~~~~~~~~~-~~~~~~~~i~~aGH~~ 366 (402)
T PLN02894 321 ASEWKVPTTFIYGRHDWMNYEGAVEARKRM-KVPCEIIRVPQGGHFV 366 (402)
T ss_pred cccCCCCEEEEEeCCCCCCcHHHHHHHHHc-CCCCcEEEeCCCCCee
Confidence 678899999999999875432 33444445 3346799999998543
No 17
>PRK03592 haloalkane dehalogenase; Provisional
Probab=91.89 E-value=0.11 Score=38.12 Aligned_cols=45 Identities=7% Similarity=-0.110 Sum_probs=30.4
Q ss_pred CcccccceEEEccCCCCCc-cc-hhhhcccCCCCceeeEEecCCcccc
Q psy5046 47 TQTLGMPVMNITGAFSPHV-DD-TVILNSRLDPTSSSWMKSCSCVSSS 92 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~-~~-vv~~ns~ldp~kttllkv~dcG~lv 92 (94)
+.+++||+|+|+|+..+.+ .. ..+.-.++-| .+++.-+++||=++
T Consensus 224 l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~-~~~~~~i~~~gH~~ 270 (295)
T PRK03592 224 LATSDVPKLLINAEPGAILTTGAIRDWCRSWPN-QLEITVFGAGLHFA 270 (295)
T ss_pred hccCCCCeEEEeccCCcccCcHHHHHHHHHhhh-hcceeeccCcchhh
Confidence 4578999999999999987 32 2233233323 46677778998544
No 18
>PRK06489 hypothetical protein; Provisional
Probab=91.37 E-value=0.41 Score=36.83 Aligned_cols=41 Identities=12% Similarity=0.055 Sum_probs=29.9
Q ss_pred CCcccccceEEEccCCCCCcc--ch--hhhcccCCCCceeeEEecCC
Q psy5046 46 CTQTLGMPVMNITGAFSPHVD--DT--VILNSRLDPTSSSWMKSCSC 88 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp~~~--~v--v~~ns~ldp~kttllkv~dc 88 (94)
.+++++||||+|+|+..+... .. .++...+. .+++..+++|
T Consensus 287 ~L~~I~~PvLvI~G~~D~~~p~~~~~~~~la~~ip--~a~l~~i~~a 331 (360)
T PRK06489 287 DLEKIKAPVLAINSADDERNPPETGVMEAALKRVK--HGRLVLIPAS 331 (360)
T ss_pred HHHhCCCCEEEEecCCCcccChhhHHHHHHHHhCc--CCeEEEECCC
Confidence 367899999999999986652 22 35666663 3678888886
No 19
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=90.54 E-value=0.7 Score=43.27 Aligned_cols=46 Identities=7% Similarity=0.076 Sum_probs=33.0
Q ss_pred CCcccccceEEEccCCCCCcc-chhhhcccCCC----------CceeeEEecCCccc
Q psy5046 46 CTQTLGMPVMNITGAFSPHVD-DTVILNSRLDP----------TSSSWMKSCSCVSS 91 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp~~~-~vv~~ns~ldp----------~kttllkv~dcG~l 91 (94)
.++.++||+|+|+|+..+... ...++...+.. ....+..+++||=+
T Consensus 1563 ~L~~I~~PtLlI~Ge~D~~~~~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~ 1619 (1655)
T PLN02980 1563 DLKQCDTPLLLVVGEKDVKFKQIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHA 1619 (1655)
T ss_pred HHhhCCCCEEEEEECCCCccHHHHHHHHHHccccccccccccccceEEEEECCCCCc
Confidence 367889999999999998653 23455554432 13589999999954
No 20
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=90.46 E-value=0.26 Score=34.37 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=30.6
Q ss_pred CCcccccceEEEccCCCCCccc-hhhhcccCCCCceeeEEecCCcccc
Q psy5046 46 CTQTLGMPVMNITGAFSPHVDD-TVILNSRLDPTSSSWMKSCSCVSSS 92 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp~~~~-vv~~ns~ldp~kttllkv~dcG~lv 92 (94)
.++.++||+|++.|+..+...+ ...+..++ | ...+..+++||-.+
T Consensus 226 ~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~-~-~~~~~~~~~~gH~~ 271 (288)
T TIGR01250 226 KLSEIKVPTLLTVGEFDTMTPEAAREMQELI-A-GSRLVVFPDGSHMT 271 (288)
T ss_pred HhhccCCCEEEEecCCCccCHHHHHHHHHhc-c-CCeEEEeCCCCCCc
Confidence 3567899999999999875432 23334433 2 35688888988653
No 21
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=90.26 E-value=0.27 Score=36.89 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=33.9
Q ss_pred CcccccceEEEccCCCCCc--cchhhhcccCCCCceeeEEecCCccc
Q psy5046 47 TQTLGMPVMNITGAFSPHV--DDTVILNSRLDPTSSSWMKSCSCVSS 91 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~--~~vv~~ns~ldp~kttllkv~dcG~l 91 (94)
+..++||+|++.|+..+.+ +.+..+..++.-...++..+++||=.
T Consensus 247 l~~i~~PvLii~G~~D~ivp~~~~~~l~~~i~~~~~~l~~~~~a~H~ 293 (330)
T PLN02298 247 LKDVSIPFIVLHGSADVVTDPDVSRALYEEAKSEDKTIKIYDGMMHS 293 (330)
T ss_pred hhhcCCCEEEEecCCCCCCCHHHHHHHHHHhccCCceEEEcCCcEee
Confidence 5678999999999998876 45566666664445688888998743
No 22
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=90.24 E-value=0.93 Score=35.05 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=31.0
Q ss_pred CcccccceEEEccCCCCCccchh-------hhcccCCCCceeeEEecCCcccc
Q psy5046 47 TQTLGMPVMNITGAFSPHVDDTV-------ILNSRLDPTSSSWMKSCSCVSSS 92 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~~vv-------~~ns~ldp~kttllkv~dcG~lv 92 (94)
+..++||||+|.|+..+...... ++...+ |. .++..+++||=++
T Consensus 288 l~~i~~PtLii~G~~D~~~p~~~~~~~~~~~l~~~i-p~-~~l~~i~~aGH~~ 338 (360)
T PLN02679 288 IPRISLPILVLWGDQDPFTPLDGPVGKYFSSLPSQL-PN-VTLYVLEGVGHCP 338 (360)
T ss_pred hhhcCCCEEEEEeCCCCCcCchhhHHHHHHhhhccC-Cc-eEEEEcCCCCCCc
Confidence 56789999999999998864321 233333 33 6788899999543
No 23
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=90.23 E-value=0.36 Score=33.21 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=32.1
Q ss_pred CCcccccceEEEccCCCCCc--cchhhhcccCCCCceeeEEecCCccc
Q psy5046 46 CTQTLGMPVMNITGAFSPHV--DDTVILNSRLDPTSSSWMKSCSCVSS 91 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp~~--~~vv~~ns~ldp~kttllkv~dcG~l 91 (94)
.+++++||+|++.|+..+.. +...++..++. +..+..++++|=.
T Consensus 193 ~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~gH~ 238 (257)
T TIGR03611 193 RLDRIQHPVLLIANRDDMLVPYTQSLRLAAALP--NAQLKLLPYGGHA 238 (257)
T ss_pred HhcccCccEEEEecCcCcccCHHHHHHHHHhcC--CceEEEECCCCCC
Confidence 36678999999999999876 34555655553 3467778888743
No 24
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=90.22 E-value=0.31 Score=32.32 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=32.1
Q ss_pred CCcccccceEEEccCCCCCcc--chhhhcccCCCCceeeEEecCCccc
Q psy5046 46 CTQTLGMPVMNITGAFSPHVD--DTVILNSRLDPTSSSWMKSCSCVSS 91 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp~~~--~vv~~ns~ldp~kttllkv~dcG~l 91 (94)
.++.++||++++.|+..+... ....+..++ | +..+..+++||=.
T Consensus 171 ~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~-~-~~~~~~~~~~gH~ 216 (228)
T PF12697_consen 171 ALPRIKVPVLVIHGEDDPIVPPESAEELADKL-P-NAELVVIPGAGHF 216 (228)
T ss_dssp HHHGSSSEEEEEEETTSSSSHHHHHHHHHHHS-T-TEEEEEETTSSST
T ss_pred cccccCCCeEEeecCCCCCCCHHHHHHHHHHC-C-CCEEEEECCCCCc
Confidence 356789999999999999874 334444444 3 5788999998743
No 25
>PLN02578 hydrolase
Probab=89.41 E-value=1.1 Score=34.36 Aligned_cols=42 Identities=14% Similarity=0.293 Sum_probs=28.6
Q ss_pred CcccccceEEEccCCCCCcc--chhhhcccCCCCceeeEEecCCccc
Q psy5046 47 TQTLGMPVMNITGAFSPHVD--DTVILNSRLDPTSSSWMKSCSCVSS 91 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~--~vv~~ns~ldp~kttllkv~dcG~l 91 (94)
+++++||+|+|.|+..+.+. ....+...+ | ++.+..+ +||-.
T Consensus 292 l~~i~~PvLiI~G~~D~~v~~~~~~~l~~~~-p-~a~l~~i-~~GH~ 335 (354)
T PLN02578 292 LSKLSCPLLLLWGDLDPWVGPAKAEKIKAFY-P-DTTLVNL-QAGHC 335 (354)
T ss_pred hhcCCCCEEEEEeCCCCCCCHHHHHHHHHhC-C-CCEEEEe-CCCCC
Confidence 67899999999999998662 233344444 3 3567777 67743
No 26
>PLN02511 hydrolase
Probab=89.31 E-value=0.48 Score=37.32 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=30.0
Q ss_pred CCcccccceEEEccCCCCCccch-h--hhcccCCCCceeeEEecCCcc
Q psy5046 46 CTQTLGMPVMNITGAFSPHVDDT-V--ILNSRLDPTSSSWMKSCSCVS 90 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp~~~~v-v--~~ns~ldp~kttllkv~dcG~ 90 (94)
.++.++||+|+|+|+..|+.... . ++-. .. ....++.+++||=
T Consensus 293 ~L~~I~vPtLiI~g~dDpi~p~~~~~~~~~~-~~-p~~~l~~~~~gGH 338 (388)
T PLN02511 293 SIKHVRVPLLCIQAANDPIAPARGIPREDIK-AN-PNCLLIVTPSGGH 338 (388)
T ss_pred hhccCCCCeEEEEcCCCCcCCcccCcHhHHh-cC-CCEEEEECCCcce
Confidence 46789999999999999987532 2 1222 22 3467888888873
No 27
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=89.12 E-value=0.51 Score=33.32 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=30.7
Q ss_pred CCcccccceEEEccCCCCCcc--chhhhcccCCCCceeeEEecCCcc
Q psy5046 46 CTQTLGMPVMNITGAFSPHVD--DTVILNSRLDPTSSSWMKSCSCVS 90 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp~~~--~vv~~ns~ldp~kttllkv~dcG~ 90 (94)
.+++++||+|++.|+..+.+. .+.++...+. ++.+..+++||=
T Consensus 215 ~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~~--~~~~~~~~~~gH 259 (278)
T TIGR03056 215 DLPRITIPLHLIAGEEDKAVPPDESKRAATRVP--TATLHVVPGGGH 259 (278)
T ss_pred hcccCCCCEEEEEeCCCcccCHHHHHHHHHhcc--CCeEEEECCCCC
Confidence 367789999999999998873 4444444442 356777888873
No 28
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=88.53 E-value=0.47 Score=39.27 Aligned_cols=41 Identities=10% Similarity=0.030 Sum_probs=32.2
Q ss_pred ccccceEEEccCCCCCc--cchhhhcccCCCCceeeEEecCCccc
Q psy5046 49 TLGMPVMNITGAFSPHV--DDTVILNSRLDPTSSSWMKSCSCVSS 91 (94)
Q Consensus 49 ~Lkc~vLlvvG~~Sp~~--~~vv~~ns~ldp~kttllkv~dcG~l 91 (94)
+++||+|+++|++.+.. +....+-.++ |. +.+..+++||=+
T Consensus 416 ~I~vPtLII~Ge~D~ivP~~~~~~la~~i-P~-a~l~vI~~aGH~ 458 (481)
T PLN03087 416 QLKCDVAIFHGGDDELIPVECSYAVKAKV-PR-ARVKVIDDKDHI 458 (481)
T ss_pred hCCCCEEEEEECCCCCCCHHHHHHHHHhC-CC-CEEEEeCCCCCc
Confidence 68999999999999876 4445566666 43 788999999954
No 29
>PRK00870 haloalkane dehalogenase; Provisional
Probab=87.83 E-value=0.54 Score=34.77 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=30.8
Q ss_pred CcccccceEEEccCCCCCccch-hhhcccCC-CCceeeEEecCCccc
Q psy5046 47 TQTLGMPVMNITGAFSPHVDDT-VILNSRLD-PTSSSWMKSCSCVSS 91 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~~v-v~~ns~ld-p~kttllkv~dcG~l 91 (94)
+..++||+|+|+|+..+..... .++...+. .++..+..+++||=.
T Consensus 235 l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~ 281 (302)
T PRK00870 235 LERWDKPFLTAFSDSDPITGGGDAILQKRIPGAAGQPHPTIKGAGHF 281 (302)
T ss_pred hhcCCCceEEEecCCCCcccCchHHHHhhcccccccceeeecCCCcc
Confidence 4678999999999999876422 34555442 122357889998843
No 30
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=85.01 E-value=1.1 Score=33.46 Aligned_cols=43 Identities=9% Similarity=0.179 Sum_probs=32.0
Q ss_pred Cccc-ccceEEEccCCCCCc--cchhhhcccCCCCceeeEEecCCccc
Q psy5046 47 TQTL-GMPVMNITGAFSPHV--DDTVILNSRLDPTSSSWMKSCSCVSS 91 (94)
Q Consensus 47 ~~~L-kc~vLlvvG~~Sp~~--~~vv~~ns~ldp~kttllkv~dcG~l 91 (94)
+..+ +||+|+|.|+..+.+ +.+.++..++. .+.+..+++||=.
T Consensus 243 ~~~i~~~P~lii~g~~D~~~p~~~~~~~~~~~~--~~~~~~~~~~gH~ 288 (306)
T TIGR01249 243 ISKIRNIPTYIVHGRYDLCCPLQSAWALHKAFP--EAELKVTNNAGHS 288 (306)
T ss_pred hhhccCCCeEEEecCCCCCCCHHHHHHHHHhCC--CCEEEEECCCCCC
Confidence 3456 699999999999866 55677877775 3567778888743
No 31
>PRK10985 putative hydrolase; Provisional
Probab=84.39 E-value=1 Score=34.18 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=30.3
Q ss_pred CcccccceEEEccCCCCCccc-hhhhcccCCCCceeeEEecCCcc
Q psy5046 47 TQTLGMPVMNITGAFSPHVDD-TVILNSRLDPTSSSWMKSCSCVS 90 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~~-vv~~ns~ldp~kttllkv~dcG~ 90 (94)
++.+++|+|+|+|+..|.... ..+--.++.| +..+..+++||=
T Consensus 251 l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~GH 294 (324)
T PRK10985 251 LNQIRKPTLIIHAKDDPFMTHEVIPKPESLPP-NVEYQLTEHGGH 294 (324)
T ss_pred HhCCCCCEEEEecCCCCCCChhhChHHHHhCC-CeEEEECCCCCc
Confidence 578899999999999997632 2222234444 467788888874
No 32
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=83.92 E-value=1 Score=28.88 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=32.0
Q ss_pred CcccccceEEEccCCCCCc--cchhhhcccCCCCceeeEEecCCc
Q psy5046 47 TQTLGMPVMNITGAFSPHV--DDTVILNSRLDPTSSSWMKSCSCV 89 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~--~~vv~~ns~ldp~kttllkv~dcG 89 (94)
++..+.|++++.|+..+.+ +.+.++..++. ...++.+++++|
T Consensus 100 ~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~-~~~~~~~i~g~~ 143 (145)
T PF12695_consen 100 LAKIRIPVLFIHGENDPLVPPEQVRRLYEALP-GPKELYIIPGAG 143 (145)
T ss_dssp HTTTTSEEEEEEETT-SSSHHHHHHHHHHHHC-SSEEEEEETTS-
T ss_pred hhccCCcEEEEEECCCCcCCHHHHHHHHHHcC-CCcEEEEeCCCc
Confidence 5577899999999999886 45666667776 778889998875
No 33
>PRK03204 haloalkane dehalogenase; Provisional
Probab=83.25 E-value=1.2 Score=33.09 Aligned_cols=41 Identities=7% Similarity=-0.074 Sum_probs=29.3
Q ss_pred ccceEEEccCCCCCc--cchhhhcccCCCCceeeEEecCCcccc
Q psy5046 51 GMPVMNITGAFSPHV--DDTVILNSRLDPTSSSWMKSCSCVSSS 92 (94)
Q Consensus 51 kc~vLlvvG~~Sp~~--~~vv~~ns~ldp~kttllkv~dcG~lv 92 (94)
+||||+|.|+..+.. .++.+.-.+.=|. .++..+++||=.+
T Consensus 227 ~~PtliI~G~~D~~~~~~~~~~~~~~~ip~-~~~~~i~~aGH~~ 269 (286)
T PRK03204 227 TKPTLLVWGMKDVAFRPKTILPRLRATFPD-HVLVELPNAKHFI 269 (286)
T ss_pred CCCeEEEecCCCcccCcHHHHHHHHHhcCC-CeEEEcCCCcccc
Confidence 899999999999764 3344444444453 6888899998543
No 34
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=83.10 E-value=1.5 Score=34.92 Aligned_cols=42 Identities=5% Similarity=-0.059 Sum_probs=30.3
Q ss_pred cccccceEEEccCCCCCccc--hhhhcccCCCCceeeEEecCCcccc
Q psy5046 48 QTLGMPVMNITGAFSPHVDD--TVILNSRLDPTSSSWMKSCSCVSSS 92 (94)
Q Consensus 48 ~~Lkc~vLlvvG~~Sp~~~~--vv~~ns~ldp~kttllkv~dcG~lv 92 (94)
+.+++|||+|+|+..++... ..++... + ..++..+++||=++
T Consensus 322 ~~i~vPvLiI~G~~D~~v~~~~~~~~a~~--~-~a~l~vIp~aGH~~ 365 (383)
T PLN03084 322 KNWKTPITVCWGLRDRWLNYDGVEDFCKS--S-QHKLIELPMAGHHV 365 (383)
T ss_pred ccCCCCEEEEeeCCCCCcCHHHHHHHHHh--c-CCeEEEECCCCCCc
Confidence 35799999999999987633 3344443 2 56889999998554
No 35
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=82.57 E-value=2.3 Score=27.89 Aligned_cols=44 Identities=16% Similarity=0.128 Sum_probs=30.5
Q ss_pred CcccccceEEEccCCCCCccc--hhhhcccCCCCceeeEEecCCccc
Q psy5046 47 TQTLGMPVMNITGAFSPHVDD--TVILNSRLDPTSSSWMKSCSCVSS 91 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~~--vv~~ns~ldp~kttllkv~dcG~l 91 (94)
...+.||+|++.|........ ...+...+.. ++.+..++++|=.
T Consensus 217 ~~~~~~P~l~i~g~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~ 262 (282)
T COG0596 217 LARITVPTLIIHGEDDPVVPAELARRLAAALPN-DARLVVIPGAGHF 262 (282)
T ss_pred hccCCCCeEEEecCCCCcCCHHHHHHHHhhCCC-CceEEEeCCCCCc
Confidence 456789999999999944443 2333333433 8889999888754
No 36
>PLN02965 Probable pheophorbidase
Probab=82.37 E-value=1.6 Score=31.43 Aligned_cols=43 Identities=14% Similarity=0.066 Sum_probs=30.3
Q ss_pred CcccccceEEEccCCCCCcc--chhhhcccCCCCceeeEEecCCccc
Q psy5046 47 TQTLGMPVMNITGAFSPHVD--DTVILNSRLDPTSSSWMKSCSCVSS 91 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~--~vv~~ns~ldp~kttllkv~dcG~l 91 (94)
...+++|+|+|+|+..+... ....+..++.- +.+..++|||=+
T Consensus 189 ~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~--a~~~~i~~~GH~ 233 (255)
T PLN02965 189 PEAEKVPRVYIKTAKDNLFDPVRQDVMVENWPP--AQTYVLEDSDHS 233 (255)
T ss_pred hhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCCc--ceEEEecCCCCc
Confidence 44689999999999998663 23444555543 457889999844
No 37
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=82.31 E-value=0.93 Score=35.35 Aligned_cols=45 Identities=4% Similarity=-0.102 Sum_probs=32.7
Q ss_pred CcccccceEEEccCCCCCc--cchhhhcccCCCC--ceeeEEec-CCccc
Q psy5046 47 TQTLGMPVMNITGAFSPHV--DDTVILNSRLDPT--SSSWMKSC-SCVSS 91 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~--~~vv~~ns~ldp~--kttllkv~-dcG~l 91 (94)
++.++||+|+|.|+..... +...++.+.+.-. ..+++.+. +||=+
T Consensus 305 l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~ 354 (379)
T PRK00175 305 LARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEIDSPYGHD 354 (379)
T ss_pred HhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCch
Confidence 6789999999999999764 4555677777432 24788885 89843
No 38
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=82.03 E-value=1.4 Score=31.99 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=29.4
Q ss_pred CcccccceEEEccCCCCCcc--chhhhcccCCCCceeeEEecCCcc
Q psy5046 47 TQTLGMPVMNITGAFSPHVD--DTVILNSRLDPTSSSWMKSCSCVS 90 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~--~vv~~ns~ldp~kttllkv~dcG~ 90 (94)
+++++||+|+++|+..+... ...++..++.. .++..++ +|=
T Consensus 203 l~~i~~P~lii~G~~D~~v~~~~~~~l~~~~~~--~~~~~i~-~gH 245 (276)
T TIGR02240 203 LHKIQQPTLVLAGDDDPIIPLINMRLLAWRIPN--AELHIID-DGH 245 (276)
T ss_pred hhcCCCCEEEEEeCCCCcCCHHHHHHHHHhCCC--CEEEEEc-CCC
Confidence 57899999999999999884 34556666643 4566665 453
No 39
>PRK10749 lysophospholipase L2; Provisional
Probab=81.55 E-value=1.4 Score=33.49 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=32.1
Q ss_pred CcccccceEEEccCCCCCccc--hhhhcccCC----C-CceeeEEecCCcccc
Q psy5046 47 TQTLGMPVMNITGAFSPHVDD--TVILNSRLD----P-TSSSWMKSCSCVSSS 92 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~~--vv~~ns~ld----p-~kttllkv~dcG~lv 92 (94)
+..+++|+|++.|+..+.++- +..+-.++. | ...+++.+++||=.+
T Consensus 255 ~~~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~ 307 (330)
T PRK10749 255 AGDITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEI 307 (330)
T ss_pred ccCCCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchh
Confidence 567899999999999987753 333433332 2 235789999998543
No 40
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=80.26 E-value=4.8 Score=32.14 Aligned_cols=45 Identities=9% Similarity=-0.105 Sum_probs=32.3
Q ss_pred CCcccccceEEEccCCCCCc--cchhhhcccCCC--CceeeEEecC-Ccc
Q psy5046 46 CTQTLGMPVMNITGAFSPHV--DDTVILNSRLDP--TSSSWMKSCS-CVS 90 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp~~--~~vv~~ns~ldp--~kttllkv~d-cG~ 90 (94)
.+..++||+|+|.|+..... +...++...+.- ..+++..+++ +|=
T Consensus 318 ~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a~l~~I~s~~GH 367 (389)
T PRK06765 318 ALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYAEVYEIESINGH 367 (389)
T ss_pred HHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCeEEEEECCCCCc
Confidence 36688999999999998765 344556555531 3688889985 773
No 41
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=78.59 E-value=2.5 Score=33.72 Aligned_cols=45 Identities=9% Similarity=0.016 Sum_probs=32.0
Q ss_pred CCcccccceEEEccCCCCCc--cchhhhcccCCCCceeeEEecCCcc
Q psy5046 46 CTQTLGMPVMNITGAFSPHV--DDTVILNSRLDPTSSSWMKSCSCVS 90 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp~~--~~vv~~ns~ldp~kttllkv~dcG~ 90 (94)
.++.++||+|++.|+....+ +.+.++..++.....++..+++||=
T Consensus 319 ~L~~I~vPvLIi~G~~D~vvp~~~a~~l~~~~~~~~k~l~~~~ga~H 365 (395)
T PLN02652 319 NFKSVTVPFMVLHGTADRVTDPLASQDLYNEAASRHKDIKLYDGFLH 365 (395)
T ss_pred hcccCCCCEEEEEeCCCCCCCHHHHHHHHHhcCCCCceEEEECCCeE
Confidence 35678999999999888776 4555565555444456777888863
No 42
>KOG2984|consensus
Probab=78.47 E-value=2 Score=33.23 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=28.5
Q ss_pred HHHHccccCCcccccccccCCCcccccceEEEccCCCCCccc
Q psy5046 26 IDAYIRRTDLNISRDLENRTCTQTLGMPVMNITGAFSPHVDD 67 (94)
Q Consensus 26 i~sy~~R~DL~i~r~~~~~~~~~~Lkc~vLlvvG~~Sp~~~~ 67 (94)
+.+|.+-.|=.+-|.. +.++|||+|++.|...|+.-+
T Consensus 196 v~qf~~~~dG~fCr~~-----lp~vkcPtli~hG~kDp~~~~ 232 (277)
T KOG2984|consen 196 VDQFHSFCDGRFCRLV-----LPQVKCPTLIMHGGKDPFCGD 232 (277)
T ss_pred HHHHhhcCCCchHhhh-----cccccCCeeEeeCCcCCCCCC
Confidence 4566666676676643 678999999999999998743
No 43
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=78.32 E-value=2.7 Score=28.51 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=30.6
Q ss_pred CcccccceEEEccCCCCCcc--chhhhcccCCCCceeeEEecCCcc
Q psy5046 47 TQTLGMPVMNITGAFSPHVD--DTVILNSRLDPTSSSWMKSCSCVS 90 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~--~vv~~ns~ldp~kttllkv~dcG~ 90 (94)
++.+++|+|++.|+..+... ....+ .++=|. ..++.+++||=
T Consensus 171 l~~i~~p~l~i~~~~D~~~p~~~~~~~-~~~~~~-~~~~~~~~~GH 214 (230)
T PF00561_consen 171 LSNIKVPTLIIWGEDDPLVPPESSEQL-AKLIPN-SQLVLIEGSGH 214 (230)
T ss_dssp HTTTTSEEEEEEETTCSSSHHHHHHHH-HHHSTT-EEEEEETTCCS
T ss_pred ccccCCCeEEEEeCCCCCCCHHHHHHH-HHhcCC-CEEEECCCCCh
Confidence 45689999999999999883 33332 344444 77889999973
No 44
>KOG4178|consensus
Probab=77.74 E-value=1.7 Score=34.66 Aligned_cols=65 Identities=11% Similarity=0.029 Sum_probs=45.9
Q ss_pred HHHccccCCcccccccccCCCcccccceEEEccCCCCCccch--hhhcccCCCCceeeEEecCCcccc
Q psy5046 27 DAYIRRTDLNISRDLENRTCTQTLGMPVMNITGAFSPHVDDT--VILNSRLDPTSSSWMKSCSCVSSS 92 (94)
Q Consensus 27 ~sy~~R~DL~i~r~~~~~~~~~~Lkc~vLlvvG~~Sp~~~~v--v~~ns~ldp~kttllkv~dcG~lv 92 (94)
.=++.++++....+ ...-.+..++.||++++|++-+...-- .+..+++=|.-+.-+.+++||=.+
T Consensus 235 gplNyyrn~~r~w~-a~~~~~~~i~iPv~fi~G~~D~v~~~p~~~~~~rk~vp~l~~~vv~~~~gH~v 301 (322)
T KOG4178|consen 235 GPLNYYRNFRRNWE-AAPWALAKITIPVLFIWGDLDPVLPYPIFGELYRKDVPRLTERVVIEGIGHFV 301 (322)
T ss_pred ccchhhHHHhhCch-hccccccccccceEEEEecCcccccchhHHHHHHHhhccccceEEecCCcccc
Confidence 33445555543331 001135688999999999999988766 666888889888888999998554
No 45
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=76.21 E-value=4.9 Score=26.65 Aligned_cols=28 Identities=14% Similarity=0.392 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcc
Q psy5046 4 HLVDGRRSYFEQCVNPINLALFIDAYIR 31 (94)
Q Consensus 4 dlv~~yr~~l~~~~N~~Nl~~fi~sy~~ 31 (94)
..+++||.++.+.++|.++--|+-+|..
T Consensus 6 ~nL~af~~yi~ktl~P~yIl~~m~~~~~ 33 (89)
T cd08816 6 RNLQRFRDYIKKILRPSYILGFMTTWLE 33 (89)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHhcC
Confidence 3579999999999999999999999964
No 46
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=73.54 E-value=9.4 Score=28.55 Aligned_cols=42 Identities=17% Similarity=0.130 Sum_probs=28.9
Q ss_pred CcccccceEEEccCCCCCccchhhhcccCCCCceeeEEecCCccc
Q psy5046 47 TQTLGMPVMNITGAFSPHVDDTVILNSRLDPTSSSWMKSCSCVSS 91 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~~vv~~ns~ldp~kttllkv~dcG~l 91 (94)
++.++||+|++.|+..+.... +...++ +....+..+++||=.
T Consensus 310 l~~i~~Pvlii~g~~D~~vp~--~~~~~l-~~~~~~~~~~~~gH~ 351 (371)
T PRK14875 310 LASLAIPVLVIWGEQDRIIPA--AHAQGL-PDGVAVHVLPGAGHM 351 (371)
T ss_pred HhcCCCCEEEEEECCCCccCH--HHHhhc-cCCCeEEEeCCCCCC
Confidence 567899999999999876641 112223 235678888888854
No 47
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=72.58 E-value=2.4 Score=32.37 Aligned_cols=45 Identities=7% Similarity=0.070 Sum_probs=30.8
Q ss_pred CCcccccceEEEccCCCCCc--cchhhhcccCCCCc--eeeEEe-cCCcc
Q psy5046 46 CTQTLGMPVMNITGAFSPHV--DDTVILNSRLDPTS--SSWMKS-CSCVS 90 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp~~--~~vv~~ns~ldp~k--ttllkv-~dcG~ 90 (94)
.++.++||+|+|.|+..... +.+.++...+...+ .+++++ ++||=
T Consensus 283 ~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~~~GH 332 (351)
T TIGR01392 283 ALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIESPYGH 332 (351)
T ss_pred HHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCCCCCc
Confidence 46788999999999998754 45666777674332 244455 57873
No 48
>PRK13604 luxD acyl transferase; Provisional
Probab=70.25 E-value=5.1 Score=31.57 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=34.7
Q ss_pred CCcccccceEEEccCCCCCc--cchhhhcccCCCCceeeEEecCCc
Q psy5046 46 CTQTLGMPVMNITGAFSPHV--DDTVILNSRLDPTSSSWMKSCSCV 89 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp~~--~~vv~~ns~ldp~kttllkv~dcG 89 (94)
..+.+++|+|++.|+.-..+ +.+.++...+...+..+..+++|+
T Consensus 197 ~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s~~kkl~~i~Ga~ 242 (307)
T PRK13604 197 KMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRSEQCKLYSLIGSS 242 (307)
T ss_pred HHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhccCCcEEEEeCCCc
Confidence 36678999999999999888 566777776765677888887775
No 49
>PRK10566 esterase; Provisional
Probab=64.85 E-value=5.4 Score=28.27 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=31.4
Q ss_pred Cccc-ccceEEEccCCCCCcc--chhhhcccCCCC----ceeeEEecCCc
Q psy5046 47 TQTL-GMPVMNITGAFSPHVD--DTVILNSRLDPT----SSSWMKSCSCV 89 (94)
Q Consensus 47 ~~~L-kc~vLlvvG~~Sp~~~--~vv~~ns~ldp~----kttllkv~dcG 89 (94)
+..+ +||+|+++|+.-+.+. ++..+...+... +.+++..+++|
T Consensus 181 ~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~ 230 (249)
T PRK10566 181 LEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVR 230 (249)
T ss_pred hhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCC
Confidence 3455 6999999999987774 666666666543 46777888876
No 50
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=63.03 E-value=4.1 Score=28.52 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=30.7
Q ss_pred cccceEEEccCCCCCc--cchhhhcccCCC--CceeeEEecCCc
Q psy5046 50 LGMPVMNITGAFSPHV--DDTVILNSRLDP--TSSSWMKSCSCV 89 (94)
Q Consensus 50 Lkc~vLlvvG~~Sp~~--~~vv~~ns~ldp--~kttllkv~dcG 89 (94)
.++|+|++.|+.-+-+ ..+.++..+|.. ....++..+++|
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~g 186 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEG 186 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-S
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCC
Confidence 7899999999988766 777778766654 238888888887
No 51
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=59.54 E-value=11 Score=31.73 Aligned_cols=44 Identities=9% Similarity=-0.100 Sum_probs=31.7
Q ss_pred CCCcccccceEEEccCCCCCc--cchhhhcccCCCCceeeEEecCCcc
Q psy5046 45 TCTQTLGMPVMNITGAFSPHV--DDTVILNSRLDPTSSSWMKSCSCVS 90 (94)
Q Consensus 45 ~~~~~Lkc~vLlvvG~~Sp~~--~~vv~~ns~ldp~kttllkv~dcG~ 90 (94)
..+..++||+|+|.|...+.+ +.+..+...+. . .....+++||=
T Consensus 409 ~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i~-~-~~~~vL~~sGH 454 (532)
T TIGR01838 409 LDLSKVKVPVYIIATREDHIAPWQSAYRGAALLG-G-PKTFVLGESGH 454 (532)
T ss_pred cchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHCC-C-CEEEEECCCCC
Confidence 457889999999999999887 44555666554 3 34456777773
No 52
>KOG2382|consensus
Probab=59.26 E-value=20 Score=28.54 Aligned_cols=70 Identities=23% Similarity=0.120 Sum_probs=45.9
Q ss_pred cCCHHHHHHHHHHHccccCCcccccccccCCCcccccceEEEccCCCCCccchhh-hcccCCCCceeeEEecCCccccc
Q psy5046 16 CVNPINLALFIDAYIRRTDLNISRDLENRTCTQTLGMPVMNITGAFSPHVDDTVI-LNSRLDPTSSSWMKSCSCVSSSL 93 (94)
Q Consensus 16 ~~N~~Nl~~fi~sy~~R~DL~i~r~~~~~~~~~~Lkc~vLlvvG~~Sp~~~~vv~-~ns~ldp~kttllkv~dcG~lv~ 93 (94)
.+|..++..+++.|. .++.+.+. +. .+..-|||++-|.+|+|+.+... -=.++=|. ..+-.+++||=.|-
T Consensus 225 ~~nl~~i~~~~~~~~---~~s~~~~l---~~-~~~~~pvlfi~g~~S~fv~~~~~~~~~~~fp~-~e~~~ld~aGHwVh 295 (315)
T KOG2382|consen 225 RVNLDSIASLLDEYE---ILSYWADL---ED-GPYTGPVLFIKGLQSKFVPDEHYPRMEKIFPN-VEVHELDEAGHWVH 295 (315)
T ss_pred EeCHHHHHHHHHHHH---hhcccccc---cc-cccccceeEEecCCCCCcChhHHHHHHHhccc-hheeecccCCceee
Confidence 468899999999885 44444432 12 45678999999999999965421 12233333 66777777886553
No 53
>PLN02872 triacylglycerol lipase
Probab=56.08 E-value=60 Score=26.06 Aligned_cols=43 Identities=9% Similarity=-0.002 Sum_probs=31.5
Q ss_pred Cccc--ccceEEEccCCCCCc--cchhhhcccCCCCceeeEEecCCcc
Q psy5046 47 TQTL--GMPVMNITGAFSPHV--DDTVILNSRLDPTSSSWMKSCSCVS 90 (94)
Q Consensus 47 ~~~L--kc~vLlvvG~~Sp~~--~~vv~~ns~ldp~kttllkv~dcG~ 90 (94)
++.+ ++|++++.|+....+ .++.++-.++.+ ...+..++++|=
T Consensus 319 l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~-~~~l~~l~~~gH 365 (395)
T PLN02872 319 LSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELPS-KPELLYLENYGH 365 (395)
T ss_pred cccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCC-ccEEEEcCCCCC
Confidence 4455 689999999998776 455677777744 346778888874
No 54
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=55.52 E-value=7.6 Score=28.76 Aligned_cols=46 Identities=9% Similarity=0.014 Sum_probs=29.5
Q ss_pred CcccccceEEEccCCCCCccchhh-------hcccCCCCceeeEEecCCcccc
Q psy5046 47 TQTLGMPVMNITGAFSPHVDDTVI-------LNSRLDPTSSSWMKSCSCVSSS 92 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~~vv~-------~ns~ldp~kttllkv~dcG~lv 92 (94)
+..++||+|++.|+..+..+...+ ...++--...++..++++|=.+
T Consensus 203 l~~~~~P~ll~~g~~D~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~H~l 255 (274)
T TIGR03100 203 LERFQGPVLFILSGNDLTAQEFADSVLGEPAWRGALEDPGIERVEIDGADHTF 255 (274)
T ss_pred HHhcCCcEEEEEcCcchhHHHHHHHhccChhhHHHhhcCCeEEEecCCCCccc
Confidence 446799999999999998754432 2232321234577777777543
No 55
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=54.60 E-value=13 Score=20.42 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHc
Q psy5046 3 PHLVDGRRSYFEQCVNPINLALFIDAYI 30 (94)
Q Consensus 3 ~dlv~~yr~~l~~~~N~~Nl~~fi~sy~ 30 (94)
.+|++.+...+-.. +|.++-.|.-.|.
T Consensus 4 ~~lL~~~~~~vl~~-qP~Di~~F~a~yF 30 (38)
T PF02197_consen 4 QELLKEFTREVLRE-QPDDILQFAADYF 30 (38)
T ss_dssp HHHHHHHHHHHHHH---S-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCcHHHHHHHHH
Confidence 46777776666554 9999999999987
No 56
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=51.19 E-value=21 Score=27.41 Aligned_cols=40 Identities=13% Similarity=0.103 Sum_probs=28.7
Q ss_pred ccceEEEccCCCCCc--cchhhhcccCCCCceeeEEecCCcc
Q psy5046 51 GMPVMNITGAFSPHV--DDTVILNSRLDPTSSSWMKSCSCVS 90 (94)
Q Consensus 51 kc~vLlvvG~~Sp~~--~~vv~~ns~ldp~kttllkv~dcG~ 90 (94)
++|+|++.|+..+.+ +.+.++..++.-...++..+++|+=
T Consensus 270 ~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~~~~l~~~~g~~H 311 (332)
T TIGR01607 270 DIPILFIHSKGDCVCSYEGTVSFYNKLSISNKELHTLEDMDH 311 (332)
T ss_pred CCCEEEEEeCCCCccCHHHHHHHHHhccCCCcEEEEECCCCC
Confidence 699999999999876 3455555555444567777887763
No 57
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=50.92 E-value=19 Score=28.85 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=27.4
Q ss_pred cccccceEEEccCCCCCc--cchhhhcccCCCCceeeEEecCC
Q psy5046 48 QTLGMPVMNITGAFSPHV--DDTVILNSRLDPTSSSWMKSCSC 88 (94)
Q Consensus 48 ~~Lkc~vLlvvG~~Sp~~--~~vv~~ns~ldp~kttllkv~dc 88 (94)
+.+++|+|+|.|+.-+.+ ++...+.... | ...++++++|
T Consensus 352 ~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~-~-~~~l~~i~~~ 392 (414)
T PRK05077 352 RRCPTPMLSGYWKNDPFSPEEDSRLIASSS-A-DGKLLEIPFK 392 (414)
T ss_pred cCCCCcEEEEecCCCCCCCHHHHHHHHHhC-C-CCeEEEccCC
Confidence 468899999999999876 3333333333 2 4568888887
No 58
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=50.88 E-value=22 Score=28.18 Aligned_cols=43 Identities=12% Similarity=0.151 Sum_probs=30.5
Q ss_pred CcccccceEEEccCCCCCc--cchhhhcccCCCCceeeEEecCCc
Q psy5046 47 TQTLGMPVMNITGAFSPHV--DDTVILNSRLDPTSSSWMKSCSCV 89 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~--~~vv~~ns~ldp~kttllkv~dcG 89 (94)
.+.|.||++.|++..-.++ ++|+++=+.++..++-+-++.+++
T Consensus 191 ~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s~~~klysl~Gs~ 235 (294)
T PF02273_consen 191 MKRLSIPFIAFTANDDDWVKQSEVEELLDNINSNKCKLYSLPGSS 235 (294)
T ss_dssp HTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT--EEEEEETT-S
T ss_pred HhhCCCCEEEEEeCCCccccHHHHHHHHHhcCCCceeEEEecCcc
Confidence 5788999999999999998 789999888999888888887764
No 59
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=47.78 E-value=29 Score=23.90 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHccccCCcccccccccC-CCcccccceEEEccCCCCCccchhhhcccCCCC--ceeeEEecCC
Q psy5046 17 VNPINLALFIDAYIRRTDLNISRDLENRT-CTQTLGMPVMNITGAFSPHVDDTVILNSRLDPT--SSSWMKSCSC 88 (94)
Q Consensus 17 ~N~~Nl~~fi~sy~~R~DL~i~r~~~~~~-~~~~Lkc~vLlvvG~~Sp~~~~vv~~ns~ldp~--kttllkv~dc 88 (94)
+.+..+..|++.|....+..-.+-.|-.. ..+.+ .|+++++|+.-++.++.+.+-.+|-.. ..++...+++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~-Pp~~i~~g~~D~l~~~~~~~~~~L~~~gv~v~~~~~~g~ 205 (211)
T PF07859_consen 132 LPAPKIDWFWKLYLPGSDRDDPLASPLNASDLKGL-PPTLIIHGEDDVLVDDSLRFAEKLKKAGVDVELHVYPGM 205 (211)
T ss_dssp SBHHHHHHHHHHHHSTGGTTSTTTSGGGSSCCTTC-HEEEEEEETTSTTHHHHHHHHHHHHHTT-EEEEEEETTE
T ss_pred ccccccccccccccccccccccccccccccccccC-CCeeeeccccccchHHHHHHHHHHHHCCCCEEEEEECCC
Confidence 45778888999998533332111111011 23333 589999999999999999998777543 3556665554
No 60
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=47.62 E-value=14 Score=31.15 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=32.5
Q ss_pred CCcccccceEEEccCCCC--CccchhhhcccCCC--CceeeEEecCCc
Q psy5046 46 CTQTLGMPVMNITGAFSP--HVDDTVILNSRLDP--TSSSWMKSCSCV 89 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp--~~~~vv~~ns~ldp--~kttllkv~dcG 89 (94)
....++||+|||.|..-. +.+.++.+-..|.. ....++-.++.|
T Consensus 546 ~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~ 593 (620)
T COG1506 546 YADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEG 593 (620)
T ss_pred hhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCC
Confidence 467899999999998874 44688888777754 446666666665
No 61
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=45.31 E-value=10 Score=27.56 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=24.6
Q ss_pred CcccccceEEEccCCCCCcc---chhhhcccCCC----CceeeEEecCCcccc
Q psy5046 47 TQTLGMPVMNITGAFSPHVD---DTVILNSRLDP----TSSSWMKSCSCVSSS 92 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~---~vv~~ns~ldp----~kttllkv~dcG~lv 92 (94)
+.+++||+|+|+|..--.-. -+..+-.||.. ...+++.-+++|=++
T Consensus 111 vE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~i 163 (213)
T PF08840_consen 111 VEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGHLI 163 (213)
T ss_dssp GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S--
T ss_pred HHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCcee
Confidence 56789999999998764443 33333344533 246888888888543
No 62
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=44.67 E-value=26 Score=26.69 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=26.0
Q ss_pred CCcccccceEEEccCCCCCc--cchhhhcccCCCCceeeEEe
Q psy5046 46 CTQTLGMPVMNITGAFSPHV--DDTVILNSRLDPTSSSWMKS 85 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp~~--~~vv~~ns~ldp~kttllkv 85 (94)
.++.++||+|++.|+..+.. ..+..+...+....-++...
T Consensus 281 ~l~~i~~Pvliv~G~~D~i~~~~~~~~~~~~~~~~~~~~~~~ 322 (350)
T TIGR01836 281 DLKNIKMPILNIYAERDHLVPPDASKALNDLVSSEDYTELSF 322 (350)
T ss_pred cHHhCCCCeEEEecCCCCcCCHHHHHHHHHHcCCCCeEEEEc
Confidence 36678999999999988765 34555555554333344443
No 63
>KOG4409|consensus
Probab=44.19 E-value=12 Score=30.48 Aligned_cols=46 Identities=13% Similarity=-0.006 Sum_probs=34.9
Q ss_pred Ccccc--cceEEEccCCCCCc-cchhhhcccCCCCceeeEEecCCcccc
Q psy5046 47 TQTLG--MPVMNITGAFSPHV-DDTVILNSRLDPTSSSWMKSCSCVSSS 92 (94)
Q Consensus 47 ~~~Lk--c~vLlvvG~~Sp~~-~~vv~~ns~ldp~kttllkv~dcG~lv 92 (94)
+.-++ |||+.+-|+.+.-- .+..++-+.|-..+...+.|+++|=-|
T Consensus 297 ~~~l~~~~pv~fiyG~~dWmD~~~g~~~~~~~~~~~~~~~~v~~aGHhv 345 (365)
T KOG4409|consen 297 LRELKKDVPVTFIYGDRDWMDKNAGLEVTKSLMKEYVEIIIVPGAGHHV 345 (365)
T ss_pred HHhhccCCCEEEEecCcccccchhHHHHHHHhhcccceEEEecCCCcee
Confidence 44556 99999999999654 566777666655669999999998543
No 64
>PRK07868 acyl-CoA synthetase; Validated
Probab=43.82 E-value=30 Score=30.76 Aligned_cols=43 Identities=9% Similarity=0.061 Sum_probs=29.6
Q ss_pred CCcccccceEEEccCCCCCc--cchhhhcccCCCCceee-EEecCCcc
Q psy5046 46 CTQTLGMPVMNITGAFSPHV--DDTVILNSRLDPTSSSW-MKSCSCVS 90 (94)
Q Consensus 46 ~~~~Lkc~vLlvvG~~Sp~~--~~vv~~ns~ldp~kttl-lkv~dcG~ 90 (94)
.+++++||+|+|+|+..+.. +.+..+...+ |. ..+ ..+++||=
T Consensus 292 ~L~~i~~P~L~i~G~~D~ivp~~~~~~l~~~i-~~-a~~~~~~~~~GH 337 (994)
T PRK07868 292 TLADITCPVLAFVGEVDDIGQPASVRGIRRAA-PN-AEVYESLIRAGH 337 (994)
T ss_pred chhhCCCCEEEEEeCCCCCCCHHHHHHHHHhC-CC-CeEEEEeCCCCC
Confidence 47899999999999999875 4455565555 32 234 45578873
No 65
>PF09119 SicP-binding: SicP binding; InterPro: IPR015203 Members of this family bind the chaperone SicP, which is required both to maintain the stability of SptP, as well as to ensure the eventual secretion of the protein. The domain is found in the Salmonella effector protein SptP, which interacts with SicP chaperone dimers mainly through four regions of its chaperone-binding domain. The structure of the SptP-SicP complex contains four molecules of SicP, aligned in a linear fashion and arranged in two sets of tightly bound homodimers that bind two SptP molecules. The SicP homodimers do not interact with each other, but are held together by a molecular interface formed between two SptP molecules. Each SptP molecule is wrapped around by three SicP chaperones (two chaperones from one homodimer and a third one from the opposite homodimer pair) []. ; GO: 0005615 extracellular space; PDB: 1JYO_F.
Probab=42.95 E-value=25 Score=22.92 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHccccCCc
Q psy5046 2 GPHLVDGRRSYFEQCVNPINLALFIDAYIRRTDLN 36 (94)
Q Consensus 2 n~dlv~~yr~~l~~~~N~~Nl~~fi~sy~~R~DL~ 36 (94)
|.+-||.|.+.+... |..-|.-|++|.-.|.+-+
T Consensus 21 N~~AVq~~~e~~~~~-nqktL~vFl~ALa~~YGe~ 54 (81)
T PF09119_consen 21 NTNAVQKYVENQRVE-NQKTLQVFLEALAERYGEE 54 (81)
T ss_dssp -HHHHHHHHHCS--S--HHHHHHHHHHHHHTTSCH
T ss_pred cHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhHH
Confidence 788999999999874 9999999999999998864
No 66
>PF03946 Ribosomal_L11_N: Ribosomal protein L11, N-terminal domain; InterPro: IPR020784 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L11 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L11 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacteria, plant chloroplast, red algal chloroplast, cyanelle and archaeabacterial L11; and mammalian, plant and yeast L12 (YL15). L11 is a protein of 140 to 165 amino-acid residues. In E. coli, the C-terminal half of L11 has been shown [] to be in an extended and loosely folded conformation and is likely to be buried within the ribosomal structure.; PDB: 2ZJQ_F 2ZJP_F 3CF5_F 2WRJ_K 2WH4_K 2WRL_K 3FIN_L 2X9U_K 3I8I_L 2XUX_K ....
Probab=42.41 E-value=22 Score=21.49 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=19.9
Q ss_pred HHHHHHHHHHccccCCcccccccccCCCc-ccccceEEEc
Q psy5046 20 INLALFIDAYIRRTDLNISRDLENRTCTQ-TLGMPVMNIT 58 (94)
Q Consensus 20 ~Nl~~fi~sy~~R~DL~i~r~~~~~~~~~-~Lkc~vLlvv 58 (94)
.|+..|.+.|+.+|.- .+ .+..||.+.+
T Consensus 26 in~~~f~k~fN~~T~~-----------~k~G~~v~V~i~v 54 (60)
T PF03946_consen 26 INIKKFCKDFNKATKD-----------YKPGIPVPVKITV 54 (60)
T ss_dssp S-HHHHHHHHHHHTTT-----------CTTSSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhc-----------ccCCCEEEEEEEE
Confidence 4889999999999975 23 4566776654
No 67
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=37.03 E-value=13 Score=29.14 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=14.1
Q ss_pred ceeeEEecCCcccccC
Q psy5046 79 SSSWMKSCSCVSSSLA 94 (94)
Q Consensus 79 kttllkv~dcG~lv~~ 94 (94)
.+.+|-+++|||+|+|
T Consensus 202 g~r~Lv~D~~~GLv~a 217 (299)
T PF04189_consen 202 GGRVLVVDDCGGLVVA 217 (299)
T ss_pred CCeEEEEeCCCChHHH
Confidence 5789999999999975
No 68
>KOG1552|consensus
Probab=36.70 E-value=24 Score=27.43 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=15.7
Q ss_pred CcccccceEEEccCCCCCc
Q psy5046 47 TQTLGMPVMNITGAFSPHV 65 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~ 65 (94)
.+.++||||++.|..-..+
T Consensus 188 I~~i~~PVLiiHgtdDevv 206 (258)
T KOG1552|consen 188 ISKITCPVLIIHGTDDEVV 206 (258)
T ss_pred ceeccCCEEEEecccCcee
Confidence 6788999999999976544
No 69
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=35.88 E-value=57 Score=24.94 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=28.3
Q ss_pred CcccccceEEEccCCCCCcc---chhhhcccCCCCceeeEEecCCc
Q psy5046 47 TQTLGMPVMNITGAFSPHVD---DTVILNSRLDPTSSSWMKSCSCV 89 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~---~vv~~ns~ldp~kttllkv~dcG 89 (94)
...+++||||+.|..-+-++ ...+.-.++.-.+.++..+++|.
T Consensus 224 ~~~~~~PvLll~g~~D~vv~~~~~~~~~~~~~~~~~~~~~~~~g~~ 269 (298)
T COG2267 224 APAIALPVLLLQGGDDRVVDNVEGLARFFERAGSPDKELKVIPGAY 269 (298)
T ss_pred cccccCCEEEEecCCCccccCcHHHHHHHHhcCCCCceEEecCCcc
Confidence 45678999999997766554 33333445555556777777664
No 70
>CHL00127 rpl11 ribosomal protein L11; Validated
Probab=34.20 E-value=24 Score=24.85 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=22.3
Q ss_pred HHHHHHHHHHccccCCcccccccccCCCcccccceEEEc
Q psy5046 20 INLALFIDAYIRRTDLNISRDLENRTCTQTLGMPVMNIT 58 (94)
Q Consensus 20 ~Nl~~fi~sy~~R~DL~i~r~~~~~~~~~~Lkc~vLlvv 58 (94)
.|++.|.+.||.||.- .+.+++||-+.+
T Consensus 33 ini~~f~k~fN~~T~~-----------~~g~~vpV~Itv 60 (140)
T CHL00127 33 VNINLFCKEYNARTKD-----------KIGLIIPVEISV 60 (140)
T ss_pred CCHHHHHHHHHHHhhh-----------cCCCeEEEEEEE
Confidence 5789999999999985 345678887766
No 71
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=33.43 E-value=17 Score=26.09 Aligned_cols=37 Identities=19% Similarity=0.441 Sum_probs=24.5
Q ss_pred cccccceEEEccCCCCCcc--chhhhcccCCCCceeeEEe
Q psy5046 48 QTLGMPVMNITGAFSPHVD--DTVILNSRLDPTSSSWMKS 85 (94)
Q Consensus 48 ~~Lkc~vLlvvG~~Sp~~~--~vv~~ns~ldp~kttllkv 85 (94)
..+++|+|-|+|.+-+.+. ....+....++. ..+++-
T Consensus 158 ~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~-~~v~~h 196 (212)
T PF03959_consen 158 PKISIPTLHVIGENDPVVPPERSEALAEMFDPD-ARVIEH 196 (212)
T ss_dssp TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH-EEEEEE
T ss_pred ccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC-cEEEEE
Confidence 4679999999999999998 777777777766 555543
No 72
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=32.77 E-value=33 Score=25.29 Aligned_cols=38 Identities=5% Similarity=0.090 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHccccCCccccc
Q psy5046 3 PHLVDGRRSYFEQCVNPINLALFIDAYIRRTDLNISRD 40 (94)
Q Consensus 3 ~dlv~~yr~~l~~~~N~~Nl~~fi~sy~~R~DL~i~r~ 40 (94)
..|+++||+.|...++..++...|+..-.|..-+|..+
T Consensus 171 VSLv~~yR~qF~~~i~~~gid~Li~~L~~~~~~~~~~~ 208 (211)
T PRK15117 171 VSMITTKQNEWADLLRTKGIDGLTAQLKSIAQQPITLD 208 (211)
T ss_pred eeHHHHHHHHHHHHHHhCCHHHHHHHHHHhccCCccCC
Confidence 45899999999999999999999999888888766653
No 73
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=32.11 E-value=63 Score=20.75 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=30.5
Q ss_pred ccceEEEccCCCCCc--cchhhhcccCCCCceeeEEecCCc
Q psy5046 51 GMPVMNITGAFSPHV--DDTVILNSRLDPTSSSWMKSCSCV 89 (94)
Q Consensus 51 kc~vLlvvG~~Sp~~--~~vv~~ns~ldp~kttllkv~dcG 89 (94)
+-|+|+|.|+.-|.- +....+.++|.. +.+|.+++.|
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~--s~lvt~~g~g 72 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPG--SRLVTVDGAG 72 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCC--ceEEEEeccC
Confidence 589999999988765 778888888876 6888888875
No 74
>KOG0584|consensus
Probab=31.51 E-value=1.1e+02 Score=26.90 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH------HccccCCcccccccccCCCcccccceEEEccCCCC
Q psy5046 6 VDGRRSYFEQCVNPINLALFIDA------YIRRTDLNISRDLENRTCTQTLGMPVMNITGAFSP 63 (94)
Q Consensus 6 v~~yr~~l~~~~N~~Nl~~fi~s------y~~R~DL~i~r~~~~~~~~~~Lkc~vLlvvG~~Sp 63 (94)
+..||+.+.+ +|++-+..+.+- |++++|=.|-+ +.|||+=+.|.|....
T Consensus 130 Lr~Y~kk~~~-vn~kaik~W~RQILkGL~yLHs~~PPIIH--------RDLKCDNIFinG~~G~ 184 (632)
T KOG0584|consen 130 LREYRKKHRR-VNIKAIKSWCRQILKGLVYLHSQDPPIIH--------RDLKCDNIFVNGNLGE 184 (632)
T ss_pred HHHHHHHhcc-CCHHHHHHHHHHHHHHhhhhhcCCCCccc--------cccccceEEEcCCcCc
Confidence 5789999877 899988777664 66666655444 4699999999998654
No 75
>PTZ00105 60S ribosomal protein L12; Provisional
Probab=31.46 E-value=27 Score=24.62 Aligned_cols=28 Identities=14% Similarity=-0.016 Sum_probs=22.7
Q ss_pred HHHHHHHHHHccccCCcccccccccCCCcccccceEEEc
Q psy5046 20 INLALFIDAYIRRTDLNISRDLENRTCTQTLGMPVMNIT 58 (94)
Q Consensus 20 ~Nl~~fi~sy~~R~DL~i~r~~~~~~~~~~Lkc~vLlvv 58 (94)
.|++.|.+.||.||-- .+.+.+||-+.+
T Consensus 12 vNi~~fck~fN~~T~~-----------~~G~~vpV~Itv 39 (140)
T PTZ00105 12 LSPKKVGDDIAKATKD-----------WKGLKVTVKLTV 39 (140)
T ss_pred CCHHHHHHHHHHHHhh-----------cCCCeEEEEEEE
Confidence 4789999999999984 345778888877
No 76
>PRK05855 short chain dehydrogenase; Validated
Probab=31.40 E-value=35 Score=27.05 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=16.8
Q ss_pred CcccccceEEEccCCCCCcc
Q psy5046 47 TQTLGMPVMNITGAFSPHVD 66 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~ 66 (94)
...++||+|+|.|+..+.+.
T Consensus 229 ~~~~~~P~lii~G~~D~~v~ 248 (582)
T PRK05855 229 ERYTDVPVQLIVPTGDPYVR 248 (582)
T ss_pred cCCccCceEEEEeCCCcccC
Confidence 34589999999999998774
No 77
>KOG2355|consensus
Probab=31.12 E-value=31 Score=27.00 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=28.7
Q ss_pred ceEEEccCCCCCccchhhhcccCCCCceeeEEecCC
Q psy5046 53 PVMNITGAFSPHVDDTVILNSRLDPTSSSWMKSCSC 88 (94)
Q Consensus 53 ~vLlvvG~~Sp~~~~vv~~ns~ldp~kttllkv~dc 88 (94)
+-.+-|+..|||+|+.+++.+.+-=--++|-++...
T Consensus 68 ~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ 103 (291)
T KOG2355|consen 68 GGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGI 103 (291)
T ss_pred CCeEEEcCcCccccccccccCceeEecccccccccc
Confidence 455778899999999999998766556888887763
No 78
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=31.11 E-value=50 Score=23.15 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=22.5
Q ss_pred CcccccceEEEccCCCCCccc--hhhhcccC--CCCceeeEEecCC
Q psy5046 47 TQTLGMPVMNITGAFSPHVDD--TVILNSRL--DPTSSSWMKSCSC 88 (94)
Q Consensus 47 ~~~Lkc~vLlvvG~~Sp~~~~--vv~~ns~l--dp~kttllkv~dc 88 (94)
.+.++||+|++.|+..|+... +..+-..| .....++..-+++
T Consensus 141 ~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga 186 (218)
T PF01738_consen 141 APKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGA 186 (218)
T ss_dssp GGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT-
T ss_pred hcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCC
Confidence 567899999999999988743 34555555 1223444444444
No 79
>PF11176 DUF2962: Protein of unknown function (DUF2962); InterPro: IPR021346 This eukaryotic family of proteins has no known function. ; PDB: 2KKM_A.
Probab=29.35 E-value=52 Score=23.33 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHccccCCccc
Q psy5046 4 HLVDGRRSYFEQ----CVNPINLALFIDAYIRRTDLNIS 38 (94)
Q Consensus 4 dlv~~yr~~l~~----~~N~~Nl~~fi~sy~~R~DL~i~ 38 (94)
|.+.-|++.+.. ..-..-+..||+.|+.|.|=+++
T Consensus 49 ~r~~wFq~~i~~~~~~~~t~~e~~~lI~~yl~R~DeEle 87 (155)
T PF11176_consen 49 ERLKWFQEAIDEKDKKPFTLEEIHELIERYLHRFDEELE 87 (155)
T ss_dssp HHHHHHHHHHHSTT-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccccCCCCCCHHHHHHHHHHHHhcCHHHHH
Confidence 456778888877 34457789999999999998776
No 80
>COG0080 RplK Ribosomal protein L11 [Translation, ribosomal structure and biogenesis]
Probab=27.86 E-value=45 Score=23.82 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=25.9
Q ss_pred HHHHHHHHHHccccCCcccccccccCCCcccccceEEEccCCCCC
Q psy5046 20 INLALFIDAYIRRTDLNISRDLENRTCTQTLGMPVMNITGAFSPH 64 (94)
Q Consensus 20 ~Nl~~fi~sy~~R~DL~i~r~~~~~~~~~~Lkc~vLlvvG~~Sp~ 64 (94)
.|++.|.+.||.||.= .+.+..||.+-+=+...|
T Consensus 32 vni~~f~k~fN~~T~~-----------~~G~~vPV~Itv~~drsf 65 (141)
T COG0080 32 VNIMEFCKEFNAATKD-----------EKGLPVPVVITVYEDRSF 65 (141)
T ss_pred CCHHHHHHHHHHHhhc-----------cCCCeeeEEEEEEcCCcE
Confidence 5899999999999874 456778888776644444
No 81
>KOG0309|consensus
Probab=27.32 E-value=1.1e+02 Score=28.10 Aligned_cols=71 Identities=20% Similarity=0.220 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHcc-------ccCCcccccccccCCCcccccceEEEccCCCCCc--cchhhhc
Q psy5046 2 GPHLVDGRRSYFEQCVNPINLALFIDAYIR-------RTDLNISRDLENRTCTQTLGMPVMNITGAFSPHV--DDTVILN 72 (94)
Q Consensus 2 n~dlv~~yr~~l~~~~N~~Nl~~fi~sy~~-------R~DL~i~r~~~~~~~~~~Lkc~vLlvvG~~Sp~~--~~vv~~n 72 (94)
|-|+|++|.+.--..+.|.|++.| +.|.. |=.|-+.| ++-|| .++-..|||. .-.++||
T Consensus 940 ~dd~iea~e~~~~~lL~~~~iq~f-~ty~~qy~~~l~rWGl~~~r-------~evLK----f~s~~~ss~s~~~~~~~cn 1007 (1081)
T KOG0309|consen 940 HDDIIEAYEQEDLLLLDPANIQQF-DTYKKQYGEILYRWGLREKR-------AEVLK----FVSCPPSSHSGIEFGVYCN 1007 (1081)
T ss_pred cchhHhhhhhhhhhhcChhhhHHH-HHHHHHHHHHHHHhcCcccc-------eeeee----eecCCCCCccccccCcccc
Confidence 568999999987778999999987 44433 55566555 22222 2333456666 3457788
Q ss_pred ccCCCCceeeEE
Q psy5046 73 SRLDPTSSSWMK 84 (94)
Q Consensus 73 s~ldp~kttllk 84 (94)
+.=+-..++++.
T Consensus 1008 ~c~n~~s~~ri~ 1019 (1081)
T KOG0309|consen 1008 HCRNGVSEVRIT 1019 (1081)
T ss_pred cccCcccceeee
Confidence 776666666654
No 82
>PF08916 Phe_ZIP: Phenylalanine zipper; InterPro: IPR015012 The phenylalanine zipper consists of aromatic side chains from ten phenylalanine residues that are stacked within a hydrophobic core. This zipper mediates dimerisation of various proteins, such as APS, SH2-B and Lnk []. ; GO: 0004871 signal transducer activity, 0035556 intracellular signal transduction; PDB: 1Q2H_B.
Probab=26.33 E-value=96 Score=18.96 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHhcCCHHH
Q psy5046 3 PHLVDGRRSYFEQCVNPIN 21 (94)
Q Consensus 3 ~dlv~~yr~~l~~~~N~~N 21 (94)
.|+.+.|++++.. ||..
T Consensus 16 ~dfAk~~~~f~~~--nP~~ 32 (59)
T PF08916_consen 16 RDFAKAFRRFINE--NPQY 32 (59)
T ss_dssp HHHHHHHHHHHHH---GGG
T ss_pred HHHHHHHHHHHhc--Cccc
Confidence 5889999999987 5654
No 83
>smart00649 RL11 Ribosomal protein L11/L12.
Probab=26.28 E-value=40 Score=23.35 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=21.4
Q ss_pred HHHHHHHHHHccccCCcccccccccCCCcccccceEEEc
Q psy5046 20 INLALFIDAYIRRTDLNISRDLENRTCTQTLGMPVMNIT 58 (94)
Q Consensus 20 ~Nl~~fi~sy~~R~DL~i~r~~~~~~~~~~Lkc~vLlvv 58 (94)
-|++.|.+.||.||-- .+.+.+||-+.+
T Consensus 25 ini~~f~k~fN~~T~~-----------~~g~~vpV~I~v 52 (132)
T smart00649 25 INIMEFCKEFNARTKD-----------KKGLPIPVKITV 52 (132)
T ss_pred CCHHHHHHHHHHHHhh-----------cCCCeEeEEEEE
Confidence 4789999999999984 235667877665
No 84
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=26.25 E-value=76 Score=23.90 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=29.4
Q ss_pred cCCCcccccceEEEccCCCCCc-cchhhhcccCCCCceeeEE
Q psy5046 44 RTCTQTLGMPVMNITGAFSPHV-DDTVILNSRLDPTSSSWMK 84 (94)
Q Consensus 44 ~~~~~~Lkc~vLlvvG~~Sp~~-~~vv~~ns~ldp~kttllk 84 (94)
++++..||.|+|++-|...+|- .+.|-=..-=||..--||+
T Consensus 135 t~HL~gl~tPtli~qGtrD~fGtr~~Va~y~ls~~iev~wl~ 176 (213)
T COG3571 135 TEHLTGLKTPTLITQGTRDEFGTRDEVAGYALSDPIEVVWLE 176 (213)
T ss_pred hhhccCCCCCeEEeecccccccCHHHHHhhhcCCceEEEEec
Confidence 5678899999999999999997 3333334444666566655
No 85
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=26.07 E-value=1.1e+02 Score=19.67 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5046 4 HLVDGRRSYFEQCVNPINLALFIDA 28 (94)
Q Consensus 4 dlv~~yr~~l~~~~N~~Nl~~fi~s 28 (94)
|+++.+|..|.+.++|.-+.-|+.+
T Consensus 3 ~~L~~~R~~L~~~l~~~~l~d~L~q 27 (86)
T cd08785 3 EALEGMRHRLTRKINPSRLTPYLRQ 27 (86)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 6889999999999999988877655
No 86
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=25.26 E-value=1.1e+02 Score=19.76 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Q psy5046 2 GPHLVDGRRSYFEQCVNPINLALFIDAYIR 31 (94)
Q Consensus 2 n~dlv~~yr~~l~~~~N~~Nl~~fi~sy~~ 31 (94)
|.++|+..|.. .+-|.-|+.|++.+-.
T Consensus 36 N~EIv~~VR~~---~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 36 NLEIVQMVRSM---KMTPEELAAFLRAMKS 62 (83)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 78999999982 4899999999998854
No 87
>PRK10162 acetyl esterase; Provisional
Probab=24.77 E-value=1.4e+02 Score=22.68 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHccccC-CcccccccccCCCcccccceEEEccCCCCCccchhhhcccCCCC--ceeeEEecCC
Q psy5046 17 VNPINLALFIDAYIRRTD-LNISRDLENRTCTQTLGMPVMNITGAFSPHVDDTVILNSRLDPT--SSSWMKSCSC 88 (94)
Q Consensus 17 ~N~~Nl~~fi~sy~~R~D-L~i~r~~~~~~~~~~Lkc~vLlvvG~~Sp~~~~vv~~ns~ldp~--kttllkv~dc 88 (94)
+....+..|++.|..... ...-+-.+-...+++--.|+++++|..-|..++...+..+|... ..++...++.
T Consensus 213 l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~de~~~~~~~L~~aGv~v~~~~~~g~ 287 (318)
T PRK10162 213 LTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPLLDDSRLLYQTLAAHQQPCEFKLYPGT 287 (318)
T ss_pred cCHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcCcChHHHHHHHHHHcCCCEEEEEECCC
Confidence 455667788888875321 10000000011121122699999999999999999999888553 3666666554
No 88
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.76 E-value=72 Score=20.45 Aligned_cols=27 Identities=7% Similarity=0.137 Sum_probs=22.6
Q ss_pred CCCccchhhhc-ccCCCCceeeEEecCC
Q psy5046 62 SPHVDDTVILN-SRLDPTSSSWMKSCSC 88 (94)
Q Consensus 62 Sp~~~~vv~~n-s~ldp~kttllkv~dc 88 (94)
+-+.-+++.|. +..||+-.||.+|+||
T Consensus 27 dWWmg~Vi~~~ggaR~P~~~tlFQVadV 54 (75)
T PF11302_consen 27 DWWMGQVIHCEGGARDPKVPTLFQVADV 54 (75)
T ss_pred CcEEEEEEEEeccccCCCCCceEEEEEc
Confidence 45567788885 5889999999999998
No 89
>PF09227 DUF1962: Domain of unknown function (DUF1962); InterPro: IPR015308 Members of this family of fungal proteins are functionally uncharacterised []. ; PDB: 1UOY_A.
Probab=22.42 E-value=44 Score=20.63 Aligned_cols=12 Identities=25% Similarity=0.642 Sum_probs=8.6
Q ss_pred eeeEEecCCccc
Q psy5046 80 SSWMKSCSCVSS 91 (94)
Q Consensus 80 ttllkv~dcG~l 91 (94)
--|-+|+|||+-
T Consensus 41 gkwteiqdc~~s 52 (64)
T PF09227_consen 41 GKWTEIQDCGAS 52 (64)
T ss_dssp TEEEEEEE-SSS
T ss_pred CceEEeeecCcc
Confidence 459999999863
No 90
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=22.26 E-value=92 Score=16.60 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcc
Q psy5046 4 HLVDGRRSYFEQCVNPINLALFIDAYIR 31 (94)
Q Consensus 4 dlv~~yr~~l~~~~N~~Nl~~fi~sy~~ 31 (94)
++++.+-..+-. -+|.|+-.|.-.|.+
T Consensus 5 ~~L~~~~~~vl~-~qP~d~~~f~~~yF~ 31 (38)
T smart00394 5 ALLEDLTVEVLR-AQPSDLVQFAADYFE 31 (38)
T ss_pred HHHHHHHHHHHH-HCCCcHHHHHHHHHH
Confidence 455555555555 389999999998874
No 91
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=21.67 E-value=69 Score=23.26 Aligned_cols=30 Identities=7% Similarity=0.059 Sum_probs=25.3
Q ss_pred ccceEEEccCCCCCccchhhhcccCCCCce
Q psy5046 51 GMPVMNITGAFSPHVDDTVILNSRLDPTSS 80 (94)
Q Consensus 51 kc~vLlvvG~~Sp~~~~vv~~ns~ldp~kt 80 (94)
.|+.+|++|..-|+.+.++..=.+.-|.|+
T Consensus 108 ~~DlvlfvG~~~~~~~~~l~~lk~f~~~~~ 137 (171)
T PRK00945 108 NYDLVIFIGVTYYYASQGLSALKHFSPLKT 137 (171)
T ss_pred CcCEEEEecCCchhHHHHHHHHhhcCCceE
Confidence 799999999999999999888666666443
No 92
>COG4261 Predicted acyltransferase [General function prediction only]
Probab=21.36 E-value=46 Score=26.43 Aligned_cols=13 Identities=38% Similarity=0.396 Sum_probs=10.9
Q ss_pred cccccceEEEccC
Q psy5046 48 QTLGMPVMNITGA 60 (94)
Q Consensus 48 ~~Lkc~vLlvvG~ 60 (94)
.-|||||.++.|-
T Consensus 230 aaLk~PV~l~fgL 242 (309)
T COG4261 230 AALKCPVNLIFGL 242 (309)
T ss_pred HHhCCCeEEEEEe
Confidence 4589999999984
No 93
>COG4790 EscR Type III secretory pathway, component EscR [Intracellular trafficking and secretion]
Probab=21.02 E-value=1.2e+02 Score=23.06 Aligned_cols=29 Identities=7% Similarity=0.206 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHccccC
Q psy5046 6 VDGRRSYFEQCVNPINLALFIDAYIRRTD 34 (94)
Q Consensus 6 v~~yr~~l~~~~N~~Nl~~fi~sy~~R~D 34 (94)
..-||+++.+..|.++.+-|.+|--++-.
T Consensus 96 l~pyR~fL~k~t~~~~~~FF~~~~~~~wp 124 (214)
T COG4790 96 LSPYRDFLKKNTEEEEVSFFERSAQKKWP 124 (214)
T ss_pred hhHHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 46799999999999999999998766544
No 94
>PF08494 DEAD_assoc: DEAD/H associated; InterPro: IPR013701 This domain is found in ATP-dependent helicases as well as a number of hypothetical proteins together with the helicase conserved C-terminal domain (IPR011545 from INTERPRO) and the IPR001650 from INTERPRO domain. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Probab=20.21 E-value=1.8e+02 Score=20.77 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHc
Q psy5046 5 LVDGRRSYFEQCVNPINLALFIDAYI 30 (94)
Q Consensus 5 lv~~yr~~l~~~~N~~Nl~~fi~sy~ 30 (94)
+.++||+-+.+.++..++..|++..-
T Consensus 145 ~~Ea~rE~l~d~lDi~~~~~~L~~i~ 170 (187)
T PF08494_consen 145 LKEALREILEDYLDIERLRELLERIR 170 (187)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 46899999999999999999999874
No 95
>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A.
Probab=20.15 E-value=68 Score=17.06 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCCHHHHHH
Q psy5046 7 DGRRSYFEQCVNPINLAL 24 (94)
Q Consensus 7 ~~yr~~l~~~~N~~Nl~~ 24 (94)
+.-.+.|+++.+|.||++
T Consensus 7 ~qV~~LI~~At~~~nLa~ 24 (33)
T PF02260_consen 7 QQVDELISEATDPENLAR 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHH
Confidence 455677888889999984
No 96
>PRK00140 rplK 50S ribosomal protein L11; Validated
Probab=20.07 E-value=60 Score=22.81 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=21.0
Q ss_pred HHHHHHHHHHccccCCcccccccccCCCcccccceEEEc
Q psy5046 20 INLALFIDAYIRRTDLNISRDLENRTCTQTLGMPVMNIT 58 (94)
Q Consensus 20 ~Nl~~fi~sy~~R~DL~i~r~~~~~~~~~~Lkc~vLlvv 58 (94)
-|++.|.+.||.||.- .+.+.+||-+.+
T Consensus 33 ini~~f~k~fN~~T~~-----------~~g~~vpV~i~v 60 (141)
T PRK00140 33 VNIMEFCKAFNARTQD-----------QKGLPIPVVITV 60 (141)
T ss_pred CCHHHHHHHHHHHHhh-----------cCCCeEEEEEEE
Confidence 4788999999999985 345567776655
Done!