RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5046
(94 letters)
>gnl|CDD|190521 pfam03096, Ndr, Ndr family. This family consists of proteins from
different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3.
Their similarity was previously noted. The precise
molecular and cellular function of members of this
family is still unknown. Yet, they are known to be
involved in cellular differentiation events. The Ndr1
group was the first to be discovered. Their expression
is repressed by the proto-oncogenes N-myc and c-myc, and
in line with this observation, Ndr1 protein expression
is down-regulated in neoplastic cells, and is
reactivated when differentiation is induced by chemicals
such as retinoic acid. Ndr2 and Ndr3 expression is not
under the control of N-myc or c-myc. Ndr1 expression is
also activated by several chemicals: tunicamycin and
homocysteine induce Ndr1 in human umbilical endothelial
cells; nickel induces Ndr1 in several cell types.
Members of this family are found in wide variety of
multicellular eukaryotes, including an Ndr1 type protein
in Helianthus annuus (sunflower), known as Sf21.
Interestingly, the highest scoring matches in the noise
are all alpha/beta hydrolases pfam00561, suggesting that
this family may have an enzymatic function (Bateman A
pers. obs.).
Length = 284
Score = 73.5 bits (181), Expect = 3e-17
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 3 PHLVDGRRSYFEQCVNPINLALFIDAYIRRTDLNISRDLENRTCTQTLGMPVMNITGAFS 62
+V R + ++ +NP NL L+++AY R DL I R PV+ + G S
Sbjct: 179 SDIVQEYRKFLKERLNPKNLQLYLEAYNNRRDLTIERG-------GLETCPVLLVVGDKS 231
Query: 63 PHVDDTVILNSRLDPTSSSWMKSCSCVS 90
PHVD V NS+LDPT ++ +K C
Sbjct: 232 PHVDAVVECNSKLDPTKTTLLKVADCGG 259
>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic
subunit; Provisional.
Length = 340
Score = 26.1 bits (57), Expect = 2.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 17 VNPINLALFIDAYIRRTDLNISRDLENRTCT 47
+ P NL L D +I+ TD ++ ++ RT T
Sbjct: 157 LKPENLLLDKDGFIKMTDFGFAKVVDTRTYT 187
>gnl|CDD|181572 PRK08871, flgK, flagellar hook-associated protein FlgK;
Validated.
Length = 626
Score = 26.0 bits (57), Expect = 3.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 1 MGPHLVDGRRSYFEQCVNPINLALFIDAYIRRTDLNISR 39
MG H+ + RRS+ + VN +NL+ A T+ N+
Sbjct: 57 MGVHVENVRRSWDQFAVNELNLSTTNLANKTDTEANLDM 95
>gnl|CDD|235005 PRK02122, PRK02122, glucosamine-6-phosphate deaminase-like protein;
Validated.
Length = 652
Score = 25.8 bits (57), Expect = 3.5
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 61 FSPHVDDTVI 70
FSPH DD VI
Sbjct: 375 FSPHPDDDVI 384
>gnl|CDD|227402 COG5070, VRG4, Nucleotide-sugar transporter [Carbohydrate transport
and metabolism / Posttranslational modification, protein
turnover, chaperones / Intracellular trafficking and
secretion].
Length = 309
Score = 25.2 bits (55), Expect = 5.4
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 12 YFEQCVNPINLALFIDAYIRRTDLNISRDLENRTCTQTLGMPVMNITGAFSPHVDD--TV 69
Y N ++ A F+ +R L +D + L +P++ FS +D
Sbjct: 157 YLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLS---FSFLFEDWSPG 213
Query: 70 ILNSRLDPTSSSWM 83
L + L S M
Sbjct: 214 NLANNLSVDSLMAM 227
>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein
Serine/Threonine Kinase, Yank1. Serine/Threonine
Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Yank1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily
contains uncharacterized STKs with similarity to the
human protein designated Yank1 or STK32A.
Length = 258
Score = 25.0 bits (55), Expect = 6.3
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 17 VNPINLALFIDAYIRRTDLNISRDLENRTCTQT 49
+ P N+ L ++ TD NI+ + T T +
Sbjct: 126 IKPDNILLDEQGHVHITDFNIATKVTPDTLTTS 158
>gnl|CDD|149458 pfam08404, Baculo_p74_N, Baculoviridae P74 N-terminal. This domain
is found at the N-terminus of P74 occlusion-derived
virus (ODV) envelope proteins which are required for
oral infectivity. The envelope proteins are found in
baculoviruses which are insect pathogens. The C-terminus
of P74 is anchored to the membrane whereas the
N-terminus is exposed to the virion surface. Furthermore
P74 is unusual for a virus envelope protein as it lacks
an N-terminal localisation signal sequence. Also see
pfam04583.
Length = 301
Score = 24.5 bits (54), Expect = 9.5
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 23 ALFIDAYIRRTDLNISRDLENRTCTQ 48
F +AY RR R L+N C+Q
Sbjct: 182 GTFNEAYCRR----FGRSLDNGGCSQ 203
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.133 0.410
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,670,493
Number of extensions: 365340
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 7
Length of query: 94
Length of database: 10,937,602
Length adjustment: 61
Effective length of query: 33
Effective length of database: 8,232,008
Effective search space: 271656264
Effective search space used: 271656264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)