RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5046
         (94 letters)



>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
           family, developmental protei differentiation,
           neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
           musculus} PDB: 2xmq_A 2xmr_A 2xms_A
          Length = 286

 Score = 61.3 bits (148), Expect = 5e-13
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 3   PHLVDGRRSYFEQCVNPINLALFIDAYIRRTDLNISRDLENRTCTQTLGMPVMNITGAFS 62
             L+   R   +   N  N+ L+ ++Y  R DLN  R         TL  PVM + G  +
Sbjct: 184 SELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGG-----ETTLKCPVMLVVGDQA 238

Query: 63  PHVDDTVILNSRLDPTSSSWMKSCSC 88
           PH D  V  NS+LDPT +S++K    
Sbjct: 239 PHEDAVVECNSKLDPTQTSFLKMADS 264


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0505    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,425,535
Number of extensions: 67231
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 94
Length of database: 6,701,793
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,998,612
Effective search space: 164954196
Effective search space used: 164954196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.0 bits)