Query psy5048
Match_columns 319
No_of_seqs 297 out of 1597
Neff 7.2
Searched_HMMs 46136
Date Sat Aug 17 00:23:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543|consensus 100.0 3.1E-54 6.8E-59 407.6 24.9 294 5-314 56-374 (397)
2 KOG0545|consensus 100.0 2.3E-38 5E-43 281.9 9.5 260 28-295 5-329 (329)
3 KOG0544|consensus 99.9 2.1E-27 4.5E-32 181.3 11.7 105 35-140 3-108 (108)
4 COG0545 FkpA FKBP-type peptidy 99.9 9.4E-26 2E-30 196.6 12.0 109 29-140 97-205 (205)
5 KOG0549|consensus 99.9 4.8E-25 1E-29 188.4 13.2 136 7-143 33-179 (188)
6 PRK11570 peptidyl-prolyl cis-t 99.9 7E-21 1.5E-25 169.9 13.2 109 29-140 98-206 (206)
7 TIGR03516 ppisom_GldI peptidyl 99.8 1.4E-20 3E-25 164.3 13.3 108 31-140 67-176 (177)
8 KOG0552|consensus 99.8 8.9E-20 1.9E-24 162.7 11.6 105 32-139 119-225 (226)
9 PF00254 FKBP_C: FKBP-type pep 99.8 5.7E-19 1.2E-23 138.1 10.3 90 47-137 4-94 (94)
10 PRK10902 FKBP-type peptidyl-pr 99.8 1.2E-18 2.6E-23 161.1 13.7 111 29-143 142-252 (269)
11 PRK15095 FKBP-type peptidyl-pr 99.6 1E-14 2.2E-19 124.9 9.3 72 47-119 4-75 (156)
12 COG1047 SlpA FKBP-type peptidy 99.4 1.1E-12 2.3E-17 112.9 9.9 70 49-119 4-73 (174)
13 PRK10737 FKBP-type peptidyl-pr 99.4 2E-12 4.2E-17 114.2 9.2 69 49-119 4-72 (196)
14 KOG0543|consensus 99.2 4.2E-11 9.2E-16 114.5 6.9 81 42-138 2-83 (397)
15 TIGR00115 tig trigger factor. 99.0 6.6E-09 1.4E-13 102.1 15.9 99 48-161 147-245 (408)
16 COG0544 Tig FKBP-type peptidyl 98.9 2.6E-08 5.7E-13 98.4 16.3 112 48-174 158-269 (441)
17 KOG4234|consensus 98.9 7.4E-09 1.6E-13 91.1 8.1 131 149-287 83-224 (271)
18 PRK01490 tig trigger factor; P 98.8 2.7E-08 5.9E-13 98.5 12.3 99 48-161 158-256 (435)
19 KOG0546|consensus 98.6 1E-07 2.2E-12 90.1 6.1 135 153-294 217-372 (372)
20 KOG0553|consensus 98.5 3.3E-07 7.1E-12 85.1 6.7 121 149-282 72-200 (304)
21 KOG0547|consensus 98.4 7.5E-07 1.6E-11 87.3 7.4 124 145-281 102-234 (606)
22 KOG0548|consensus 98.1 3.3E-06 7.2E-11 83.5 6.1 111 157-280 357-475 (539)
23 TIGR00990 3a0801s09 mitochondr 98.1 8.4E-06 1.8E-10 84.1 8.7 126 124-265 95-228 (615)
24 KOG4648|consensus 97.8 1.6E-05 3.4E-10 75.4 3.6 112 152-276 91-210 (536)
25 KOG0551|consensus 97.7 0.00012 2.6E-09 69.2 7.8 115 156-279 79-215 (390)
26 KOG0550|consensus 97.4 0.00025 5.4E-09 68.7 6.2 116 157-283 248-372 (486)
27 PLN03088 SGT1, suppressor of 97.4 0.0004 8.6E-09 67.2 7.0 111 159-282 3-121 (356)
28 KOG0376|consensus 97.3 0.00025 5.5E-09 69.8 4.2 115 157-284 3-125 (476)
29 KOG0549|consensus 97.2 0.00037 8E-09 60.5 3.7 56 81-140 1-56 (188)
30 KOG0548|consensus 96.2 0.0088 1.9E-07 59.8 6.1 105 158-275 2-114 (539)
31 KOG0624|consensus 95.7 0.0092 2E-07 57.1 3.6 58 215-279 324-389 (504)
32 PF13414 TPR_11: TPR repeat; P 95.3 0.01 2.2E-07 42.6 1.7 49 207-262 12-69 (69)
33 PF14559 TPR_19: Tetratricopep 94.9 0.053 1.1E-06 38.6 4.5 57 211-274 4-68 (68)
34 KOG0544|consensus 94.3 0.023 4.9E-07 44.3 1.4 20 18-37 88-107 (108)
35 PF13371 TPR_9: Tetratricopept 93.8 0.092 2E-06 37.9 4.0 60 208-274 5-72 (73)
36 PF13432 TPR_16: Tetratricopep 93.8 0.049 1.1E-06 38.6 2.4 50 209-265 8-65 (65)
37 KOG4642|consensus 92.6 0.54 1.2E-05 43.1 7.6 110 155-277 7-129 (284)
38 TIGR02552 LcrH_SycD type III s 91.1 0.76 1.6E-05 37.0 6.4 65 207-278 60-132 (135)
39 PF00515 TPR_1: Tetratricopept 90.9 0.14 3E-06 31.4 1.5 26 239-264 1-34 (34)
40 PRK15359 type III secretion sy 90.7 0.94 2E-05 37.8 6.8 59 207-272 67-133 (144)
41 PRK15359 type III secretion sy 89.4 0.68 1.5E-05 38.6 4.9 69 207-282 33-109 (144)
42 PF13431 TPR_17: Tetratricopep 89.2 0.39 8.3E-06 30.1 2.5 29 221-256 2-30 (34)
43 PLN03088 SGT1, suppressor of 86.7 1.6 3.6E-05 42.1 6.3 63 209-278 13-83 (356)
44 PF00254 FKBP_C: FKBP-type pep 85.5 0.56 1.2E-05 35.9 2.0 26 7-35 69-94 (94)
45 KOG1308|consensus 84.7 0.44 9.6E-06 45.7 1.2 132 150-294 106-248 (377)
46 PF14853 Fis1_TPR_C: Fis1 C-te 81.1 2.5 5.4E-05 29.4 3.6 23 257-279 27-49 (53)
47 KOG0624|consensus 80.0 17 0.00037 35.4 9.8 64 215-285 206-277 (504)
48 KOG1310|consensus 78.8 5 0.00011 40.9 6.2 110 156-280 372-494 (758)
49 PF13414 TPR_11: TPR repeat; P 77.5 6.1 0.00013 27.7 4.9 43 237-279 1-51 (69)
50 PRK11189 lipoprotein NlpI; Pro 76.0 7.3 0.00016 36.4 6.3 49 211-266 111-167 (296)
51 PRK02603 photosystem I assembl 74.9 17 0.00036 30.8 7.8 107 207-317 44-171 (172)
52 PRK10370 formate-dependent nit 74.9 4.8 0.0001 35.5 4.5 37 237-273 71-115 (198)
53 PF13428 TPR_14: Tetratricopep 74.5 2.7 5.8E-05 27.4 2.1 33 241-273 3-43 (44)
54 PF07719 TPR_2: Tetratricopept 73.6 2.1 4.6E-05 25.6 1.4 25 240-264 2-34 (34)
55 TIGR00990 3a0801s09 mitochondr 73.3 11 0.00024 38.9 7.4 57 211-274 378-442 (615)
56 cd00189 TPR Tetratricopeptide 73.1 27 0.00059 23.9 7.6 65 209-280 11-83 (100)
57 KOG4151|consensus 71.6 4.5 9.7E-05 42.7 3.9 104 156-268 51-164 (748)
58 TIGR02552 LcrH_SycD type III s 70.7 11 0.00024 30.0 5.4 65 209-280 28-100 (135)
59 TIGR02521 type_IV_pilW type IV 68.3 26 0.00057 29.5 7.6 56 210-272 43-106 (234)
60 TIGR02795 tol_pal_ybgF tol-pal 67.9 16 0.00034 27.9 5.6 50 209-265 13-73 (119)
61 PRK09782 bacteriophage N4 rece 67.3 11 0.00023 41.7 5.9 78 210-299 56-141 (987)
62 PRK11189 lipoprotein NlpI; Pro 66.7 17 0.00036 34.0 6.4 59 208-273 74-140 (296)
63 PF06409 NPIP: Nuclear pore co 66.4 3 6.5E-05 37.8 1.2 42 265-306 120-177 (265)
64 PRK09782 bacteriophage N4 rece 66.0 14 0.00029 40.9 6.4 63 209-278 654-724 (987)
65 PRK15179 Vi polysaccharide bio 64.9 31 0.00066 36.7 8.6 90 209-306 131-228 (694)
66 COG3063 PilF Tfp pilus assembl 62.8 18 0.00039 33.2 5.5 60 207-273 44-111 (250)
67 KOG1127|consensus 62.3 12 0.00026 40.9 4.9 77 211-294 15-102 (1238)
68 TIGR03302 OM_YfiO outer membra 62.1 40 0.00087 29.6 7.8 61 207-274 79-158 (235)
69 PRK12370 invasion protein regu 61.4 22 0.00049 36.3 6.7 51 211-268 351-409 (553)
70 PLN02789 farnesyltranstransfer 58.9 32 0.00068 32.9 6.8 79 213-299 87-175 (320)
71 TIGR02521 type_IV_pilW type IV 55.2 60 0.0013 27.2 7.5 62 207-275 144-213 (234)
72 PLN02789 farnesyltranstransfer 55.0 18 0.0004 34.5 4.5 59 209-274 153-226 (320)
73 TIGR02795 tol_pal_ybgF tol-pal 54.4 16 0.00035 27.9 3.4 62 207-272 48-117 (119)
74 PRK10049 pgaA outer membrane p 53.7 50 0.0011 35.3 8.0 65 209-280 370-442 (765)
75 PRK12370 invasion protein regu 53.6 19 0.00041 36.9 4.7 57 214-277 320-384 (553)
76 PRK10370 formate-dependent nit 53.5 68 0.0015 28.1 7.7 81 209-297 84-175 (198)
77 KOG0553|consensus 52.4 61 0.0013 30.7 7.3 62 195-264 79-148 (304)
78 COG4235 Cytochrome c biogenesi 51.4 21 0.00045 33.7 4.1 54 218-278 142-203 (287)
79 TIGR03302 OM_YfiO outer membra 50.9 78 0.0017 27.8 7.7 55 207-268 42-107 (235)
80 PF12569 NARP1: NMDA receptor- 48.7 84 0.0018 32.2 8.3 87 208-303 204-299 (517)
81 PF13181 TPR_8: Tetratricopept 48.0 8.7 0.00019 22.9 0.7 24 240-263 2-33 (34)
82 PRK15174 Vi polysaccharide exp 46.7 40 0.00087 35.4 5.9 57 211-274 89-153 (656)
83 PRK15174 Vi polysaccharide exp 45.0 76 0.0017 33.3 7.6 79 209-295 257-347 (656)
84 PLN03098 LPA1 LOW PSII ACCUMUL 44.6 49 0.0011 33.2 5.7 44 206-256 83-129 (453)
85 PF14853 Fis1_TPR_C: Fis1 C-te 44.1 16 0.00036 25.3 1.7 29 207-242 10-38 (53)
86 PRK11447 cellulose synthase su 43.7 33 0.00072 38.5 4.9 60 209-275 362-429 (1157)
87 PRK14720 transcript cleavage f 42.9 61 0.0013 35.5 6.5 71 212-292 97-175 (906)
88 PF13432 TPR_16: Tetratricopep 41.3 63 0.0014 22.1 4.5 35 257-292 23-57 (65)
89 TIGR02917 PEP_TPR_lipo putativ 40.7 1E+02 0.0022 32.0 7.8 80 208-296 746-833 (899)
90 PRK11447 cellulose synthase su 40.5 1.1E+02 0.0023 34.5 8.2 82 207-296 612-701 (1157)
91 PRK15179 Vi polysaccharide bio 40.1 72 0.0016 33.9 6.5 79 208-294 96-182 (694)
92 PRK10803 tol-pal system protei 40.0 91 0.002 28.9 6.5 77 211-294 156-245 (263)
93 KOG0547|consensus 39.9 63 0.0014 32.9 5.6 57 212-275 374-438 (606)
94 smart00028 TPR Tetratricopepti 39.7 22 0.00047 19.2 1.6 17 240-256 2-18 (34)
95 PRK10049 pgaA outer membrane p 39.2 63 0.0014 34.5 6.0 61 207-274 402-470 (765)
96 PF13525 YfiO: Outer membrane 37.9 1.4E+02 0.0031 26.0 7.3 81 206-290 50-152 (203)
97 PRK14574 hmsH outer membrane p 37.9 82 0.0018 34.2 6.6 83 209-300 113-203 (822)
98 PRK11788 tetratricopeptide rep 37.4 75 0.0016 30.0 5.8 97 207-314 258-363 (389)
99 cd00189 TPR Tetratricopeptide 36.5 68 0.0015 21.8 4.2 42 207-255 43-84 (100)
100 PF13428 TPR_14: Tetratricopep 36.3 61 0.0013 20.7 3.5 34 207-247 10-43 (44)
101 PF06552 TOM20_plant: Plant sp 34.7 19 0.0004 31.8 1.0 46 214-266 7-70 (186)
102 PF12895 Apc3: Anaphase-promot 33.5 44 0.00095 24.5 2.8 63 212-281 3-74 (84)
103 KOG2076|consensus 32.8 1.2E+02 0.0027 32.9 6.7 70 196-273 138-215 (895)
104 PF07820 TraC: TraC-like prote 32.3 76 0.0017 24.7 3.8 31 264-294 4-34 (92)
105 TIGR02917 PEP_TPR_lipo putativ 32.2 1.3E+02 0.0027 31.3 6.9 62 209-277 170-239 (899)
106 KOG1173|consensus 32.1 1.9E+02 0.0042 29.9 7.7 74 196-276 453-534 (611)
107 COG1278 CspC Cold shock protei 31.0 1.3E+02 0.0028 22.1 4.7 50 34-86 5-55 (67)
108 PRK10866 outer membrane biogen 30.1 4.1E+02 0.0089 24.0 9.1 82 206-291 77-187 (243)
109 KOG1126|consensus 29.7 92 0.002 32.6 5.1 105 165-283 428-541 (638)
110 PRK10803 tol-pal system protei 29.7 1.4E+02 0.003 27.7 5.9 65 206-274 188-260 (263)
111 PRK13848 conjugal transfer pro 29.4 94 0.002 24.2 3.9 28 265-292 6-33 (98)
112 PF13133 DUF3949: Protein of u 28.5 46 0.00099 23.8 1.9 22 271-292 9-30 (62)
113 PRK11906 transcriptional regul 28.3 94 0.002 31.3 4.8 50 217-273 323-380 (458)
114 COG5625 Predicted transcriptio 25.1 1.5E+02 0.0032 23.6 4.4 45 237-281 55-110 (113)
115 PRK14574 hmsH outer membrane p 24.3 2.1E+02 0.0045 31.2 6.8 54 209-271 79-142 (822)
116 PF03704 BTAD: Bacterial trans 23.7 3.8E+02 0.0083 21.4 7.3 40 209-255 73-112 (146)
117 PRK10747 putative protoheme IX 22.1 2.5E+02 0.0054 27.3 6.5 64 208-278 128-200 (398)
118 KOG0550|consensus 21.6 1.5E+02 0.0033 29.6 4.7 25 150-174 41-65 (486)
119 KOG1156|consensus 21.5 2.4E+02 0.0053 29.7 6.3 70 211-282 54-126 (700)
120 CHL00033 ycf3 photosystem I as 21.5 2E+02 0.0043 23.9 5.0 70 200-276 74-166 (168)
121 PRK11788 tetratricopeptide rep 20.7 4.1E+02 0.0089 24.9 7.6 38 211-255 193-230 (389)
122 PLN03098 LPA1 LOW PSII ACCUMUL 20.4 1.8E+02 0.0038 29.4 4.9 35 234-268 70-112 (453)
No 1
>KOG0543|consensus
Probab=100.00 E-value=3.1e-54 Score=407.56 Aligned_cols=294 Identities=21% Similarity=0.244 Sum_probs=251.7
Q ss_pred cccccCCCCCCCCCCCCCCCCCCeeecccceE----EEEeecCcC--CCCCCCCcEEEEEEEEEEeCCcEEeeeccCCCC
Q psy5048 5 LLLPFGENRNPFYKTPCIRPRSTLSLSPYSLS----LILPRRAEN--LKPYVNVKICVSSFKPTFKLTLVAMRIHDRDQP 78 (319)
Q Consensus 5 ~~~~~g~~g~~~~~~p~Ipp~atl~~d~~lv~----~~i~~~G~G--~~p~~~~~v~v~~y~~~l~dg~v~d~s~~~~~p 78 (319)
.-|++|+.|+| |.||++++|.|++++++ -.|+++|.| .+|..+..|.|| |.|++.|+ +|+++.. +
T Consensus 56 ~tm~~g~~~~p----p~ip~~a~l~fe~el~Dg~iiKriir~G~gd~~~P~~g~~V~v~-~~G~~~~~-~f~~~~~---~ 126 (397)
T KOG0543|consen 56 ATMKKGEAGSP----PKIPSNATLLFEVELLDGGIIKRIIREGEGDYSRPNKGAVVKVH-LEGELEDG-VFDQREL---R 126 (397)
T ss_pred ccccccccCCC----CCCCCCcceeeeecccCCceEEeeeecCCCCCCCCCCCcEEEEE-EEEEECCc-ceecccc---c
Confidence 44788999999 99999999999999744 568889999 799999999997 99999777 7777533 4
Q ss_pred eEEeeCC-CcccccHhHhhhccccCcEEEEEeCCCCCCCC-CCCCCCCCCCCeEEEEEEEeeeeeccchhhccCccccch
Q psy5048 79 FTFTLGV-GQVIKGWDQGLTEMCVGEKRKLTIPPALAYGD-RGAGNVIPGGLSAVRQSEHSELEISTKFFLELIPNKFLH 156 (319)
Q Consensus 79 ~~f~lG~-~~~i~Gle~al~~Mk~GE~~~v~i~p~~ayG~-~g~~~~Ip~~~~l~feVeL~~v~~~~~~~~~m~~eek~~ 156 (319)
|+|.+|+ ..+|.||+.+|..|++||++.|+|+|.|+||. -+.++.||||++|.|+|+|++|....+..|.|..+|++.
T Consensus 127 fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~ 206 (397)
T KOG0543|consen 127 FEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLE 206 (397)
T ss_pred eEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHH
Confidence 8888888 58999999999999999999999999999994 456788999999999999999996565779999999999
Q ss_pred hhhhhhhcCCcccccchHHHHHHH-Hhhhhhcc---cCCc---chhHHHHHHHhhHH--HHHHhcccchhHhHHhhhhcc
Q psy5048 157 WDRRFTQKGPMAKNREHIAHRARR-DRGKRRIQ---SFKP---HRAESEKLYAHCSS--AYALLVKKTPSIHNCFLLSTK 227 (319)
Q Consensus 157 ~a~~~ke~Gn~~~~~~~~~~~~~~-~~~k~~~~---~~k~---~~~~~~~l~~~~~~--~~~~~~~~~~a~~~c~~vl~~ 227 (319)
.|.++|+.||.+|++++|..+... +....... +..+ +......+-+++|. |+.++..|..|+.+|++||+.
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 999999999999999999755432 22111111 1111 22334445555555 557779999999999999999
Q ss_pred ccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHhHhHHHHHHHHHhcccCCCCC
Q psy5048 228 SMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQRGHMITQGSLYFFLFYNMSSP 299 (319)
Q Consensus 228 ~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k~~~~kek~~y~~mF~~~~~~ 299 (319)
+| +|+|||||||++++.+++|+ |++++|+|++|++||++|++++++++.+||++|+|||+++++.
T Consensus 287 ~~-------~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~ 359 (397)
T KOG0543|consen 287 DP-------NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEE 359 (397)
T ss_pred CC-------CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 99 99999999999999999997 9999999999999999999999999999999999999999999
Q ss_pred CchhhhhhcccCCCC
Q psy5048 300 LNKVNAYLCSESEHN 314 (319)
Q Consensus 300 ~~~~~~~~~~~~~~~ 314 (319)
.+|...-++++++-+
T Consensus 360 ~~k~~s~~~~~~~~~ 374 (397)
T KOG0543|consen 360 SAKTKSEAALEDKPK 374 (397)
T ss_pred ccccccchhcccCcc
Confidence 999999999998765
No 2
>KOG0545|consensus
Probab=100.00 E-value=2.3e-38 Score=281.94 Aligned_cols=260 Identities=12% Similarity=0.023 Sum_probs=222.8
Q ss_pred eeecccceEEEEeecCcCCCCC--CCCcEEEEEEEEEEeC--CcEEeeeccCCCCeEEeeCCCcccccHhHhhhccccCc
Q psy5048 28 LSLSPYSLSLILPRRAENLKPY--VNVKICVSSFKPTFKL--TLVAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGE 103 (319)
Q Consensus 28 l~~d~~lv~~~i~~~G~G~~p~--~~~~v~v~~y~~~l~d--g~v~d~s~~~~~p~~f~lG~~~~i~Gle~al~~Mk~GE 103 (319)
+..+++.|.-.++.+|.|.-|. +|..++|| |.....| ++++|+|+..|+|+++++|+.+.+|.||..|.+|+++|
T Consensus 5 a~l~~~gv~Kril~~G~g~l~e~~dGTrv~FH-frtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~E 83 (329)
T KOG0545|consen 5 ALLNVEGVKKRILHGGTGELPEFIDGTRVIFH-FRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHE 83 (329)
T ss_pred hhccchhhhHhhccCCCccCccccCCceEEEE-EEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhh
Confidence 3445666777889999998776 56777775 7776655 45999999999999999999999999999999999999
Q ss_pred EEEEEeCCCC-------------------------------------CCCCCCCCCCCCCCCeEEEEEEEeeeeecc---
Q psy5048 104 KRKLTIPPAL-------------------------------------AYGDRGAGNVIPGGLSAVRQSEHSELEIST--- 143 (319)
Q Consensus 104 ~~~v~i~p~~-------------------------------------ayG~~g~~~~Ip~~~~l~feVeL~~v~~~~--- 143 (319)
++.|+|...+ +.|+.+++.+....++|+|.|+|+.|+.|.
T Consensus 84 vaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq 163 (329)
T KOG0545|consen 84 VAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQ 163 (329)
T ss_pred HHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhc
Confidence 9999887533 336666666777889999999999999766
Q ss_pred chhhccCccccchhhhhhhhcCCcccccchHH-----HHHHHHhhhhhcccCCcchhHHHHHHHhhHH-------HHHHh
Q psy5048 144 KFFLELIPNKFLHWDRRFTQKGPMAKNREHIA-----HRARRDRGKRRIQSFKPHRAESEKLYAHCSS-------AYALL 211 (319)
Q Consensus 144 ~~~~~m~~eek~~~a~~~ke~Gn~~~~~~~~~-----~~~~~~~~k~~~~~~k~~~~~~~~l~~~~~~-------~~~~~ 211 (319)
.+.|+|+.+||+.+++.++++||.+|+.++|. ++.+..+.++.+..+||.+.+|.+|...... |....
T Consensus 164 ~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~ 243 (329)
T KOG0545|consen 164 RETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKK 243 (329)
T ss_pred cccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhH
Confidence 56799999999999999999999999999886 3444567888889999999999888755443 44555
Q ss_pred cccchhHhHHhhhhccccccccCCCCChhHHHHHHH-HHHhcCccc-------cccCCCC-hhhHHHHHHHHHHHHhHhH
Q psy5048 212 VKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYT-RLALLLPFL-------QYEFPPE-QSQCLPLLGIRAQHQRGHM 282 (319)
Q Consensus 212 ~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~-~~~~~~~~~-------a~~~dP~-n~~i~~el~~l~~~~k~~~ 282 (319)
..+-.++++|+.||.++| .|||||||||+ +++.|++.+ +|++||+ .+.|.+||+.|..++++.+
T Consensus 244 ~e~yevleh~seiL~~~~-------~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~ 316 (329)
T KOG0545|consen 244 EEYYEVLEHCSEILRHHP-------GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQ 316 (329)
T ss_pred HHHHHHHHHHHHHHhcCC-------chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhh
Confidence 888889999999999999 99999999999 667798876 9999999 7899999999999999999
Q ss_pred HHHHHHHHhcccC
Q psy5048 283 ITQGSLYFFLFYN 295 (319)
Q Consensus 283 ~kek~~y~~mF~~ 295 (319)
..+|-.|++||+.
T Consensus 317 ~edr~~~~kmfs~ 329 (329)
T KOG0545|consen 317 EEDRLRCRKMFSQ 329 (329)
T ss_pred hHHHHHHHHhcCC
Confidence 9999999999973
No 3
>KOG0544|consensus
Probab=99.95 E-value=2.1e-27 Score=181.26 Aligned_cols=105 Identities=34% Similarity=0.547 Sum_probs=99.7
Q ss_pred eEEEEeecCcC-CCCCCCCcEEEEEEEEEEeCCcEEeeeccCCCCeEEeeCCCcccccHhHhhhccccCcEEEEEeCCCC
Q psy5048 35 LSLILPRRAEN-LKPYVNVKICVSSFKPTFKLTLVAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPAL 113 (319)
Q Consensus 35 v~~~i~~~G~G-~~p~~~~~v~v~~y~~~l~dg~v~d~s~~~~~p~~f~lG~~~~i~Gle~al~~Mk~GE~~~v~i~p~~ 113 (319)
|+..++..|.| ..|..|+.|++| |++++.||+.||||++++.||.|.+|.+.+|.||++++..|.+||++.++|+|++
T Consensus 3 v~~~~i~~Gdg~tfpK~Gqtvt~h-Ytg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~ 81 (108)
T KOG0544|consen 3 VEKQVISPGDGRTFPKKGQTVTVH-YTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY 81 (108)
T ss_pred ceeEEeeCCCCcccCCCCCEEEEE-EEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence 56778899999 588889999886 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCeEEEEEEEeeee
Q psy5048 114 AYGDRGAGNVIPGGLSAVRQSEHSELE 140 (319)
Q Consensus 114 ayG~~g~~~~Ip~~~~l~feVeL~~v~ 140 (319)
|||..|.+..||||++|+|+|||++++
T Consensus 82 aYG~~G~p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 82 AYGPRGHPGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred ccCCCCCCCccCCCcEEEEEEEEEecC
Confidence 999999999999999999999999874
No 4
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.4e-26 Score=196.65 Aligned_cols=109 Identities=39% Similarity=0.571 Sum_probs=102.3
Q ss_pred eecccceEEEEeecCcCCCCCCCCcEEEEEEEEEEeCCcEEeeeccCCCCeEEeeCCCcccccHhHhhhccccCcEEEEE
Q psy5048 29 SLSPYSLSLILPRRAENLKPYVNVKICVSSFKPTFKLTLVAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLT 108 (319)
Q Consensus 29 ~~d~~lv~~~i~~~G~G~~p~~~~~v~v~~y~~~l~dg~v~d~s~~~~~p~~f~lG~~~~i~Gle~al~~Mk~GE~~~v~ 108 (319)
......|.|.++..|.|..|..++.|.+| |+|++.||++||+|+.+++|+.|.|| ++|+||.+||.+|++|++++++
T Consensus 97 ~~~~sgl~y~~~~~G~G~~~~~~~~V~vh-Y~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~ 173 (205)
T COG0545 97 KTLPSGLQYKVLKAGDGAAPKKGDTVTVH-YTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLT 173 (205)
T ss_pred eECCCCcEEEEEeccCCCCCCCCCEEEEE-EEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEE
Confidence 44556677888999999999999999997 99999999999999999999999996 9999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeEEEEEEEeeee
Q psy5048 109 IPPALAYGDRGAGNVIPGGLSAVRQSEHSELE 140 (319)
Q Consensus 109 i~p~~ayG~~g~~~~Ip~~~~l~feVeL~~v~ 140 (319)
|||++|||..|.++.||||++|+|+|+|++|.
T Consensus 174 IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 174 IPPELAYGERGVPGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred eCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence 99999999999888899999999999999873
No 5
>KOG0549|consensus
Probab=99.92 E-value=4.8e-25 Score=188.44 Aligned_cols=136 Identities=38% Similarity=0.529 Sum_probs=110.1
Q ss_pred cccCCCCCCCCCCCCCCCCCCeeecc---------cceEEEEeec--CcCCCCCCCCcEEEEEEEEEEeCCcEEeeeccC
Q psy5048 7 LPFGENRNPFYKTPCIRPRSTLSLSP---------YSLSLILPRR--AENLKPYVNVKICVSSFKPTFKLTLVAMRIHDR 75 (319)
Q Consensus 7 ~~~g~~g~~~~~~p~Ipp~atl~~d~---------~lv~~~i~~~--G~G~~p~~~~~v~v~~y~~~l~dg~v~d~s~~~ 75 (319)
||||..|+...-.+.|+-...+.|.+ +.+++.++.. ........||.+.+| |++.+.||++||||+.+
T Consensus 33 l~fg~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~~p~~C~~kak~GD~l~~H-Y~g~leDGt~fdSS~~r 111 (188)
T KOG0549|consen 33 LGFGEGGRGDLNILVITILLVLLFRASAAEKWNPDEELQIGVLKKPEECPEKAKKGDTLHVH-YTGSLEDGTKFDSSYSR 111 (188)
T ss_pred ccccccccccccceEEEeeeeehhhhhhhhhcCCCCceeEEEEECCccccccccCCCEEEEE-EEEEecCCCEEeeeccC
Confidence 68887777743333444333333322 3334434433 234566678999997 99999999999999999
Q ss_pred CCCeEEeeCCCcccccHhHhhhccccCcEEEEEeCCCCCCCCCCCCCCCCCCCeEEEEEEEeeeeecc
Q psy5048 76 DQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGGLSAVRQSEHSELEIST 143 (319)
Q Consensus 76 ~~p~~f~lG~~~~i~Gle~al~~Mk~GE~~~v~i~p~~ayG~~g~~~~Ip~~~~l~feVeL~~v~~~~ 143 (319)
++|++|+||.+++|+||+++|.+|++||++.++|||+++||+.|.++.||++++|+|+|||+++...+
T Consensus 112 g~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~~~~ 179 (188)
T KOG0549|consen 112 GAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGAPPKIPGDAVLIFDIELVKIERGP 179 (188)
T ss_pred CCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCCCCCCCCCeeEEEEEEEEEeecCC
Confidence 99999999999999999999999999999999999999999999888899999999999999999754
No 6
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.85 E-value=7e-21 Score=169.86 Aligned_cols=109 Identities=32% Similarity=0.409 Sum_probs=100.8
Q ss_pred eecccceEEEEeecCcCCCCCCCCcEEEEEEEEEEeCCcEEeeeccCCCCeEEeeCCCcccccHhHhhhccccCcEEEEE
Q psy5048 29 SLSPYSLSLILPRRAENLKPYVNVKICVSSFKPTFKLTLVAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLT 108 (319)
Q Consensus 29 ~~d~~lv~~~i~~~G~G~~p~~~~~v~v~~y~~~l~dg~v~d~s~~~~~p~~f~lG~~~~i~Gle~al~~Mk~GE~~~v~ 108 (319)
...+..+.+.++++|.|..|..++.|.+| |++++.||++||+++.++.|++|.+| .+|+||+++|.+|++|+++.|+
T Consensus 98 ~~t~sGl~y~vi~~G~G~~p~~~d~V~v~-Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~ 174 (206)
T PRK11570 98 NSTESGLQFRVLTQGEGAIPARTDRVRVH-YTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELT 174 (206)
T ss_pred EECCCCcEEEEEeCCCCCCCCCCCEEEEE-EEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEE
Confidence 44556678888999999999999999996 99999999999999998899999995 7999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeEEEEEEEeeee
Q psy5048 109 IPPALAYGDRGAGNVIPGGLSAVRQSEHSELE 140 (319)
Q Consensus 109 i~p~~ayG~~g~~~~Ip~~~~l~feVeL~~v~ 140 (319)
|||+++||..|.++.|||+++|+|+|||++|.
T Consensus 175 IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 175 IPHELAYGERGAGASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred ECHHHcCCCCCCCCCcCCCCeEEEEEEEEEEC
Confidence 99999999999887899999999999999873
No 7
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.85 E-value=1.4e-20 Score=164.25 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=96.6
Q ss_pred cccceEEEEe--ecCcCCCCCCCCcEEEEEEEEEEeCCcEEeeeccCCCCeEEeeCCCcccccHhHhhhccccCcEEEEE
Q psy5048 31 SPYSLSLILP--RRAENLKPYVNVKICVSSFKPTFKLTLVAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLT 108 (319)
Q Consensus 31 d~~lv~~~i~--~~G~G~~p~~~~~v~v~~y~~~l~dg~v~d~s~~~~~p~~f~lG~~~~i~Gle~al~~Mk~GE~~~v~ 108 (319)
....+.+.+. ..|.|..|..++.|++| |.+++.||++|++++.. .|+.|.+|.+++++||+++|.+|++||++.|+
T Consensus 67 t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~-Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~ 144 (177)
T TIGR03516 67 SQNGFWYYYNQKDTGEGTTPEFGDLVTFE-YDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETATFL 144 (177)
T ss_pred CCCccEEEEEEecCCCCCcCCCCCEEEEE-EEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEEEEE
Confidence 3444555555 45788899999999997 99999999999999864 49999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeEEEEEEEeeee
Q psy5048 109 IPPALAYGDRGAGNVIPGGLSAVRQSEHSELE 140 (319)
Q Consensus 109 i~p~~ayG~~g~~~~Ip~~~~l~feVeL~~v~ 140 (319)
|||++|||..|..+.||||++|+|+|+|++|.
T Consensus 145 iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 145 FPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred ECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 99999999999888899999999999999986
No 8
>KOG0552|consensus
Probab=99.82 E-value=8.9e-20 Score=162.74 Aligned_cols=105 Identities=33% Similarity=0.520 Sum_probs=95.8
Q ss_pred ccceEEEEeecCcCCCCCCCCcEEEEEEEEEEe-CCcEEeeeccCCCCeE-EeeCCCcccccHhHhhhccccCcEEEEEe
Q psy5048 32 PYSLSLILPRRAENLKPYVNVKICVSSFKPTFK-LTLVAMRIHDRDQPFT-FTLGVGQVIKGWDQGLTEMCVGEKRKLTI 109 (319)
Q Consensus 32 ~~lv~~~i~~~G~G~~p~~~~~v~v~~y~~~l~-dg~v~d~s~~~~~p~~-f~lG~~~~i~Gle~al~~Mk~GE~~~v~i 109 (319)
...|.|..++-|.|..|..|..|.++ |.+++. +|.+||++.. +.|+. |.+|.+.+|+||+.+|.+|++|.+++|+|
T Consensus 119 ~~Gl~y~D~~vG~G~~a~~G~rV~v~-Y~Gkl~~~GkvFd~~~~-~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrviI 196 (226)
T KOG0552|consen 119 PGGLRYEDLRVGSGPSAKKGKRVSVR-YIGKLKGNGKVFDSNFG-GKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRVII 196 (226)
T ss_pred CCCcEEEEEEecCCCCCCCCCEEEEE-EEEEecCCCeEeecccC-CCCccccccCCCCCCchHHHhhhhhccCCeeEEEe
Confidence 33466777788999999999999986 999998 8999999876 45888 99999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEEEEEeee
Q psy5048 110 PPALAYGDRGAGNVIPGGLSAVRQSEHSEL 139 (319)
Q Consensus 110 ~p~~ayG~~g~~~~Ip~~~~l~feVeL~~v 139 (319)
||++|||..+.+. ||||++|+|+|||+.|
T Consensus 197 Pp~lgYg~~g~~~-IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 197 PPELGYGKKGVPE-IPPNSTLVFDVELLSV 225 (226)
T ss_pred CccccccccCcCc-CCCCCcEEEEEEEEec
Confidence 9999999999884 9999999999999986
No 9
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.79 E-value=5.7e-19 Score=138.11 Aligned_cols=90 Identities=33% Similarity=0.526 Sum_probs=84.2
Q ss_pred CCCCCCcEEEEEEEEEEeCCcEEeeeccCCCCeEEeeCCCcccccHhHhhhccccCcEEEEEeCCCCCCCCCCC-CCCCC
Q psy5048 47 KPYVNVKICVSSFKPTFKLTLVAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGA-GNVIP 125 (319)
Q Consensus 47 ~p~~~~~v~v~~y~~~l~dg~v~d~s~~~~~p~~f~lG~~~~i~Gle~al~~Mk~GE~~~v~i~p~~ayG~~g~-~~~Ip 125 (319)
.|..++.|.++ |.+++.||++|++++..+.|++|.+|.+.+++||+++|.+|++||++.|.|||+++||..+. ...||
T Consensus 4 ~~~~gd~V~i~-y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip 82 (94)
T PF00254_consen 4 TPKEGDTVTIH-YTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPKIP 82 (94)
T ss_dssp SBSTTSEEEEE-EEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTBT
T ss_pred cCCCCCEEEEE-EEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCCcC
Confidence 48889999996 99999999999999888889999999999999999999999999999999999999999987 44599
Q ss_pred CCCeEEEEEEEe
Q psy5048 126 GGLSAVRQSEHS 137 (319)
Q Consensus 126 ~~~~l~feVeL~ 137 (319)
++++|+|+|+|+
T Consensus 83 ~~~~l~f~Iell 94 (94)
T PF00254_consen 83 PNSTLVFEIELL 94 (94)
T ss_dssp TTSEEEEEEEEE
T ss_pred CCCeEEEEEEEC
Confidence 999999999986
No 10
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.79 E-value=1.2e-18 Score=161.11 Aligned_cols=111 Identities=28% Similarity=0.412 Sum_probs=101.2
Q ss_pred eecccceEEEEeecCcCCCCCCCCcEEEEEEEEEEeCCcEEeeeccCCCCeEEeeCCCcccccHhHhhhccccCcEEEEE
Q psy5048 29 SLSPYSLSLILPRRAENLKPYVNVKICVSSFKPTFKLTLVAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLT 108 (319)
Q Consensus 29 ~~d~~lv~~~i~~~G~G~~p~~~~~v~v~~y~~~l~dg~v~d~s~~~~~p~~f~lG~~~~i~Gle~al~~Mk~GE~~~v~ 108 (319)
.-....+.+.++.+|.|..|..++.|.++ |++++.||++|++++.++.|+.|.+ +.+|+||+++|.+|++|+++.|+
T Consensus 142 ~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~-Y~g~l~dG~vfdss~~~g~p~~f~l--~~vipG~~EaL~~Mk~Gek~~l~ 218 (269)
T PRK10902 142 KTTSTGLLYKVEKEGTGEAPKDSDTVVVN-YKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLV 218 (269)
T ss_pred EECCCccEEEEEeCCCCCCCCCCCEEEEE-EEEEeCCCCEeeccccCCCceEEec--CCcchHHHHHHhcCCCCcEEEEE
Confidence 34566788889999999999999999996 9999999999999998889999998 46999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeEEEEEEEeeeeecc
Q psy5048 109 IPPALAYGDRGAGNVIPGGLSAVRQSEHSELEIST 143 (319)
Q Consensus 109 i~p~~ayG~~g~~~~Ip~~~~l~feVeL~~v~~~~ 143 (319)
||++++||..+.+ .||||++|+|+|+|++|..++
T Consensus 219 IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~~~ 252 (269)
T PRK10902 219 IPPELAYGKAGVP-GIPANSTLVFDVELLDVKPAP 252 (269)
T ss_pred ECchhhCCCCCCC-CCCCCCcEEEEEEEEEeccCc
Confidence 9999999999876 599999999999999998644
No 11
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.57 E-value=1e-14 Score=124.94 Aligned_cols=72 Identities=25% Similarity=0.407 Sum_probs=65.8
Q ss_pred CCCCCCcEEEEEEEEEEeCCcEEeeeccCCCCeEEeeCCCcccccHhHhhhccccCcEEEEEeCCCCCCCCCC
Q psy5048 47 KPYVNVKICVSSFKPTFKLTLVAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRG 119 (319)
Q Consensus 47 ~p~~~~~v~v~~y~~~l~dg~v~d~s~~~~~p~~f~lG~~~~i~Gle~al~~Mk~GE~~~v~i~p~~ayG~~g 119 (319)
.+..++.|.+| |++++.||++||+|+..+.|+.|.+|.+++++||+++|.+|++|+++.|.|||++|||..+
T Consensus 4 ~i~~~~~V~v~-Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 4 SVQSNSAVLVH-FTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred ccCCCCEEEEE-EEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 34567778886 9999999999999988788999999999999999999999999999999999999999765
No 12
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.1e-12 Score=112.93 Aligned_cols=70 Identities=26% Similarity=0.408 Sum_probs=63.7
Q ss_pred CCCCcEEEEEEEEEEeCCcEEeeeccCCCCeEEeeCCCcccccHhHhhhccccCcEEEEEeCCCCCCCCCC
Q psy5048 49 YVNVKICVSSFKPTFKLTLVAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRG 119 (319)
Q Consensus 49 ~~~~~v~v~~y~~~l~dg~v~d~s~~~~~p~~f~lG~~~~i~Gle~al~~Mk~GE~~~v~i~p~~ayG~~g 119 (319)
..++-|.++ |++++.||++||+|.....|+.|++|.+++++|||+||.+|.+|++..|.|||+.|||.++
T Consensus 4 ~k~~~V~i~-Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 4 EKGDVVSLH-YTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred cCCCEEEEE-EEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 456667775 9999999999999987667999999999999999999999999999999999999999765
No 13
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.37 E-value=2e-12 Score=114.24 Aligned_cols=69 Identities=17% Similarity=0.313 Sum_probs=62.2
Q ss_pred CCCCcEEEEEEEEEEeCCcEEeeeccCCCCeEEeeCCCcccccHhHhhhccccCcEEEEEeCCCCCCCCCC
Q psy5048 49 YVNVKICVSSFKPTFKLTLVAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRG 119 (319)
Q Consensus 49 ~~~~~v~v~~y~~~l~dg~v~d~s~~~~~p~~f~lG~~~~i~Gle~al~~Mk~GE~~~v~i~p~~ayG~~g 119 (319)
..++.|+++ |+.++.||++|++|+. ..|++|++|.++++||||++|.+|.+|++..|+|+|+.|||.++
T Consensus 4 ~~~~vV~l~-Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 4 AKDLVVSLA-YQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred CCCCEEEEE-EEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 455667775 9999999999999875 56999999999999999999999999999999999999999765
No 14
>KOG0543|consensus
Probab=99.17 E-value=4.2e-11 Score=114.55 Aligned_cols=81 Identities=30% Similarity=0.471 Sum_probs=74.4
Q ss_pred cCcCC-CCCCCCcEEEEEEEEEEeCCcEEeeeccCCCCeEEeeCCCcccccHhHhhhccccCcEEEEEeCCCCCCCCCCC
Q psy5048 42 RAENL-KPYVNVKICVSSFKPTFKLTLVAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGA 120 (319)
Q Consensus 42 ~G~G~-~p~~~~~v~v~~y~~~l~dg~v~d~s~~~~~p~~f~lG~~~~i~Gle~al~~Mk~GE~~~v~i~p~~ayG~~g~ 120 (319)
+|+|. .|..|+.|.+| |++++.||+.||+|.+ +.|+.|.+|.+.+|.||+.++.+|+. |+.+.
T Consensus 2 eg~g~~~p~~g~~v~~h-ytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~ 65 (397)
T KOG0543|consen 2 EGTGTETPMTGDKVEVH-YTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGS 65 (397)
T ss_pred CCCCccCCCCCceeEEE-EeEEecCCeecccccC-CCceeeecCCCccccccccccccccc--------------cccCC
Confidence 56664 88899999996 9999999999999998 88999999999999999999999998 78888
Q ss_pred CCCCCCCCeEEEEEEEee
Q psy5048 121 GNVIPGGLSAVRQSEHSE 138 (319)
Q Consensus 121 ~~~Ip~~~~l~feVeL~~ 138 (319)
++.||++++|.|+|+|++
T Consensus 66 pp~ip~~a~l~fe~el~D 83 (397)
T KOG0543|consen 66 PPKIPSNATLLFEVELLD 83 (397)
T ss_pred CCCCCCCcceeeeecccC
Confidence 999999999999999843
No 15
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.03 E-value=6.6e-09 Score=102.07 Aligned_cols=99 Identities=17% Similarity=0.264 Sum_probs=81.4
Q ss_pred CCCCCcEEEEEEEEEEeCCcEEeeeccCCCCeEEeeCCCcccccHhHhhhccccCcEEEEEeCCCCCCCCCCCCCCCCCC
Q psy5048 48 PYVNVKICVSSFKPTFKLTLVAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127 (319)
Q Consensus 48 p~~~~~v~v~~y~~~l~dg~v~d~s~~~~~p~~f~lG~~~~i~Gle~al~~Mk~GE~~~v~i~p~~ayG~~g~~~~Ip~~ 127 (319)
+..|+.|++ +|+++. ||..|+++. ..++.|.+|.+.+++||+++|.||++|++..|.++++.+|+..+.. |
T Consensus 147 ~~~gD~V~v-~~~~~~-dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~~-----g 217 (408)
T TIGR00115 147 AEKGDRVTI-DFEGFI-DGEAFEGGK--AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEELA-----G 217 (408)
T ss_pred cCCCCEEEE-EEEEEE-CCEECcCCC--CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccCC-----C
Confidence 455777777 599976 898888763 4589999999999999999999999999999999999999877654 5
Q ss_pred CeEEEEEEEeeeeeccchhhccCccccchhhhhh
Q psy5048 128 LSAVRQSEHSELEISTKFFLELIPNKFLHWDRRF 161 (319)
Q Consensus 128 ~~l~feVeL~~v~~~~~~~~~m~~eek~~~a~~~ 161 (319)
.++.|+|+|.+|.... .|+-+.+++..+
T Consensus 218 k~~~f~v~i~~I~~~~------~peldDefak~~ 245 (408)
T TIGR00115 218 KEATFKVTVKEVKEKE------LPELDDEFAKEL 245 (408)
T ss_pred CeEEEEEEEEEeccCC------CCCCCHHHHHhc
Confidence 8999999999998532 344556677765
No 16
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.6e-08 Score=98.45 Aligned_cols=112 Identities=14% Similarity=0.258 Sum_probs=88.8
Q ss_pred CCCCCcEEEEEEEEEEeCCcEEeeeccCCCCeEEeeCCCcccccHhHhhhccccCcEEEEEeCCCCCCCCCCCCCCCCCC
Q psy5048 48 PYVNVKICVSSFKPTFKLTLVAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127 (319)
Q Consensus 48 p~~~~~v~v~~y~~~l~dg~v~d~s~~~~~p~~f~lG~~~~i~Gle~al~~Mk~GE~~~v~i~p~~ayG~~g~~~~Ip~~ 127 (319)
...||.|++ +|.|+. ||..|..... +.+.|+||.+.+||||+.+|.||+.|+...|.+..+..|....+.+
T Consensus 158 a~~gD~v~I-Df~g~i-Dg~~fegg~a--e~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~LaG----- 228 (441)
T COG0544 158 AENGDRVTI-DFEGSV-DGEEFEGGKA--ENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEELAG----- 228 (441)
T ss_pred cccCCEEEE-EEEEEE-cCeeccCccc--cCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHhCC-----
Confidence 667777877 699966 8988887543 4699999999999999999999999999999999888998887765
Q ss_pred CeEEEEEEEeeeeeccchhhccCccccchhhhhhhhcCCcccccchH
Q psy5048 128 LSAVRQSEHSELEISTKFFLELIPNKFLHWDRRFTQKGPMAKNREHI 174 (319)
Q Consensus 128 ~~l~feVeL~~v~~~~~~~~~m~~eek~~~a~~~ke~Gn~~~~~~~~ 174 (319)
.+..|.|+|..|.... .++-+.++|+.+-...+.-..+.++
T Consensus 229 K~a~F~V~vkeVk~~e------lpEldDEfAk~~~~~~tL~~Lk~~~ 269 (441)
T COG0544 229 KEATFKVKVKEVKKRE------LPELDDEFAKKLGEEDTLEELKEKL 269 (441)
T ss_pred CceEEEEEEEEEeecC------CCCCCHHHHHhcCccccHHHHHHHH
Confidence 8899999999999533 5556667777776554443334433
No 17
>KOG4234|consensus
Probab=98.86 E-value=7.4e-09 Score=91.14 Aligned_cols=131 Identities=9% Similarity=0.019 Sum_probs=93.8
Q ss_pred cCcccc---chhhhhhhhcCCcccccchHHHHHHHHhhhhhcccCCcchhHHHHHHHhhHHHHHHhcccchhHhHHhhhh
Q psy5048 149 LIPNKF---LHWDRRFTQKGPMAKNREHIAHRARRDRGKRRIQSFKPHRAESEKLYAHCSSAYALLVKKTPSIHNCFLLS 225 (319)
Q Consensus 149 m~~eek---~~~a~~~ke~Gn~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~a~~~c~~vl 225 (319)
++++++ +.-+..+|.+||.+|+.+.|+.+.. .+......-..--.++..-|+.+--.|..++.+|..+|..|++.+
T Consensus 83 ~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~s-kY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai 161 (271)
T KOG4234|consen 83 FSDEEKDKAIEKADSLKKEGNELFKNGDYEEANS-KYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI 161 (271)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH-HHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH
Confidence 444444 3457889999999999999975432 111111111000112222333333335577899999999999999
Q ss_pred ccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHhHhHHHHHH
Q psy5048 226 TKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQRGHMITQGS 287 (319)
Q Consensus 226 ~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k~~~~kek~ 287 (319)
+..| .|.|||-|||.+|.-+.-|+ .+++||+++.++.-..+|..++.+.+++-|.
T Consensus 162 el~p-------ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKe 224 (271)
T KOG4234|consen 162 ELNP-------TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKE 224 (271)
T ss_pred hcCc-------hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9888 99999999999887665554 8999999999999999999999888887765
No 18
>PRK01490 tig trigger factor; Provisional
Probab=98.84 E-value=2.7e-08 Score=98.52 Aligned_cols=99 Identities=16% Similarity=0.262 Sum_probs=81.3
Q ss_pred CCCCCcEEEEEEEEEEeCCcEEeeeccCCCCeEEeeCCCcccccHhHhhhccccCcEEEEEeCCCCCCCCCCCCCCCCCC
Q psy5048 48 PYVNVKICVSSFKPTFKLTLVAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127 (319)
Q Consensus 48 p~~~~~v~v~~y~~~l~dg~v~d~s~~~~~p~~f~lG~~~~i~Gle~al~~Mk~GE~~~v~i~p~~ayG~~g~~~~Ip~~ 127 (319)
+..|+.|++ +|.+.. ||..|+++. ..++.|.+|.+.+++||+++|.||++|++..|.++++..|+..+.. |
T Consensus 158 ~~~gD~V~v-d~~~~~-~g~~~~~~~--~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~la-----g 228 (435)
T PRK01490 158 AENGDRVTI-DFVGSI-DGEEFEGGK--AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDLA-----G 228 (435)
T ss_pred CCCCCEEEE-EEEEEE-CCEECcCCC--CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccCC-----C
Confidence 566777777 599987 888887653 3589999999999999999999999999999999999999887664 4
Q ss_pred CeEEEEEEEeeeeeccchhhccCccccchhhhhh
Q psy5048 128 LSAVRQSEHSELEISTKFFLELIPNKFLHWDRRF 161 (319)
Q Consensus 128 ~~l~feVeL~~v~~~~~~~~~m~~eek~~~a~~~ 161 (319)
.++.|.|+|.+|.... .|+-+.+++..+
T Consensus 229 k~~~f~v~v~~V~~~~------~pel~Defak~~ 256 (435)
T PRK01490 229 KEATFKVTVKEVKEKE------LPELDDEFAKKL 256 (435)
T ss_pred CeEEEEEEEEEeccCC------CCCCCHHHHHhc
Confidence 8999999999998532 345556677655
No 19
>KOG0546|consensus
Probab=98.55 E-value=1e-07 Score=90.12 Aligned_cols=135 Identities=12% Similarity=-0.021 Sum_probs=95.5
Q ss_pred ccchhhhhhhhcCCcccccchHHHHHHHHhhhhhcccCCc-------------chhHHHHHHHhhHHHHHHhcccchhHh
Q psy5048 153 KFLHWDRRFTQKGPMAKNREHIAHRARRDRGKRRIQSFKP-------------HRAESEKLYAHCSSAYALLVKKTPSIH 219 (319)
Q Consensus 153 ek~~~a~~~ke~Gn~~~~~~~~~~~~~~~~~k~~~~~~k~-------------~~~~~~~l~~~~~~~~~~~~~~~~a~~ 219 (319)
..+..+..+++.||..++...+..+.+..........+.+ .......++.+...+..+...+..++-
T Consensus 217 ~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~ 296 (372)
T KOG0546|consen 217 KALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARF 296 (372)
T ss_pred hhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCccee
Confidence 3445678888999998888777644332211111111000 011111222222223356688888999
Q ss_pred HHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHhHhHHHHHHHHHh
Q psy5048 220 NCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQRGHMITQGSLYFF 291 (319)
Q Consensus 220 ~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k~~~~kek~~y~~ 291 (319)
.|..+++.++ +++||+|||++++..+.+++ |...+|++++|..++....++.+.+++++++.+.+
T Consensus 297 ~~~~~~~~~~-------s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k 369 (372)
T KOG0546|consen 297 RTNEALRDER-------SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSK 369 (372)
T ss_pred ccccccccCh-------hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 9999999777 99999999999766655543 89999999999999999999999999999999999
Q ss_pred ccc
Q psy5048 292 LFY 294 (319)
Q Consensus 292 mF~ 294 (319)
||+
T Consensus 370 ~~s 372 (372)
T KOG0546|consen 370 MFS 372 (372)
T ss_pred hcC
Confidence 995
No 20
>KOG0553|consensus
Probab=98.46 E-value=3.3e-07 Score=85.06 Aligned_cols=121 Identities=14% Similarity=0.142 Sum_probs=94.2
Q ss_pred cCccccchhhhhhhhcCCcccccchHHHHHHHHhhhhhcccCCcchhHHHHHHHhhHHHHHHhcccchhHhHHhhhhccc
Q psy5048 149 LIPNKFLHWDRRFTQKGPMAKNREHIAHRARRDRGKRRIQSFKPHRAESEKLYAHCSSAYALLVKKTPSIHNCFLLSTKS 228 (319)
Q Consensus 149 m~~eek~~~a~~~ke~Gn~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~a~~~c~~vl~~~ 228 (319)
.+++|....|+++|.+||.+.+.++|..++... .+.. .+.|..+ .++++--.|+..+..+..|++-|...+.+|
T Consensus 72 ~~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY-~~AI--~l~P~nA---VyycNRAAAy~~Lg~~~~AVkDce~Al~iD 145 (304)
T KOG0553|consen 72 LTPEEDKALAESLKNEGNKLMKNKDYQEAVDKY-TEAI--ELDPTNA---VYYCNRAAAYSKLGEYEDAVKDCESALSID 145 (304)
T ss_pred cChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHH--hcCCCcc---hHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 344478889999999999999999997665322 1111 1111111 234333346688899999999999999999
Q ss_pred cccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHhHhH
Q psy5048 229 MLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQRGHM 282 (319)
Q Consensus 229 ~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k~~~ 282 (319)
| +-.|||-|-|.++..++.++ ||++||+|...+.-|+...+++++..
T Consensus 146 p-------~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 146 P-------HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred h-------HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9 99999999999888888886 79999999999999999999888766
No 21
>KOG0547|consensus
Probab=98.38 E-value=7.5e-07 Score=87.28 Aligned_cols=124 Identities=11% Similarity=0.045 Sum_probs=89.4
Q ss_pred hhhccCccccchhhhhhhhcCCcccccchHHHHHHHHhhhhhcccCCcchhHHHHHHHhhHHHHHHhcccchhHhHHhhh
Q psy5048 145 FFLELIPNKFLHWDRRFTQKGPMAKNREHIAHRARRDRGKRRIQSFKPHRAESEKLYAHCSSAYALLVKKTPSIHNCFLL 224 (319)
Q Consensus 145 ~~~~m~~eek~~~a~~~ke~Gn~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~a~~~c~~v 224 (319)
....|++++++..|..+|.+||.+|..++|..++..... . ...+|.+ --.+.+...|+..+..|..+++-|++.
T Consensus 102 ~~~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~-A--I~l~p~e---piFYsNraAcY~~lgd~~~Vied~TkA 175 (606)
T KOG0547|consen 102 QKKAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQ-A--IELCPDE---PIFYSNRAACYESLGDWEKVIEDCTKA 175 (606)
T ss_pred hhhccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHH-H--HhcCCCC---chhhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 346789999999999999999999999999766543211 1 1222222 124455555788899999999999999
Q ss_pred hccccccccCCCCChhHHHHHHHHHHhcCccc---------cccCCCChhhHHHHHHHHHHHHhHh
Q psy5048 225 STKSMLTFARNQSTIPAWTHDYTRLALLLPFL---------QYEFPPEQSQCLPLLGIRAQHQRGH 281 (319)
Q Consensus 225 l~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~---------a~~~dP~n~~i~~el~~l~~~~k~~ 281 (319)
|+.+| +-+||||||+.++..++.+. .+--+..|..+...+-++=+++...
T Consensus 176 LEl~P-------~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ 234 (606)
T KOG0547|consen 176 LELNP-------DYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMK 234 (606)
T ss_pred hhcCc-------HHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHH
Confidence 99999 99999999999888887774 3334555666665555554444433
No 22
>KOG0548|consensus
Probab=98.15 E-value=3.3e-06 Score=83.51 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=88.5
Q ss_pred hhhhhhhcCCcccccchHHHHHHHHhhhhhcccCCcchhHHHHHHHhhHHHHHHhcccchhHhHHhhhhccccccccCCC
Q psy5048 157 WDRRFTQKGPMAKNREHIAHRARRDRGKRRIQSFKPHRAESEKLYAHCSSAYALLVKKTPSIHNCFLLSTKSMLTFARNQ 236 (319)
Q Consensus 157 ~a~~~ke~Gn~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~ 236 (319)
.+...+++||.+|..++|..+...... . ...+|.+ ..+|++--.|+.++..+..+++-|..+++.+|
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~Yte-A--Ikr~P~D---a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p------- 423 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTE-A--IKRDPED---ARLYSNRAACYLKLGEYPEALKDAKKCIELDP------- 423 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHH-H--HhcCCch---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-------
Confidence 377788899999999999766643322 1 1222333 34776666688889999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHhH
Q psy5048 237 STIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQRG 280 (319)
Q Consensus 237 ~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k~ 280 (319)
+++||++|.|.++..+.+|+ ++++||+++++..-+++|-+.+..
T Consensus 424 ~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~ 475 (539)
T KOG0548|consen 424 NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRG 475 (539)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhc
Confidence 99999999999777777775 999999999999999999987633
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.11 E-value=8.4e-06 Score=84.09 Aligned_cols=126 Identities=12% Similarity=0.061 Sum_probs=94.9
Q ss_pred CCCCCeEEEEEEEeeeeeccchhhccCccccchhhhhhhhcCCcccccchHHHHHHHHhhhhhcccCCcchhHHHHHHHh
Q psy5048 124 IPGGLSAVRQSEHSELEISTKFFLELIPNKFLHWDRRFTQKGPMAKNREHIAHRARRDRGKRRIQSFKPHRAESEKLYAH 203 (319)
Q Consensus 124 Ip~~~~l~feVeL~~v~~~~~~~~~m~~eek~~~a~~~ke~Gn~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~l~~~ 203 (319)
+|++.++.+.+++..+... ..|.|+++++...+..+++.||.++..++|..+...- .+.. ...|. ...+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y-~~al--~~~p~----~~~~~n 165 (615)
T TIGR00990 95 APKNAPVEPADELPEIDES--SVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLY-SKAI--ECKPD----PVYYSN 165 (615)
T ss_pred CCCCCCCCccccccccchh--hcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHH--hcCCc----hHHHHH
Confidence 6777777888777776643 3599999999999999999999999999997655322 2221 22222 124444
Q ss_pred hHHHHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChh
Q psy5048 204 CSSAYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQS 265 (319)
Q Consensus 204 ~~~~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~ 265 (319)
...|+..+..+..|+..|..+|+.+| +|+|||||||..+..+++++ ++.+++.+.
T Consensus 166 ~a~~~~~l~~~~~Ai~~~~~al~l~p-------~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~ 228 (615)
T TIGR00990 166 RAACHNALGDWEKVVEDTTAALELDP-------DYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228 (615)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 55577888999999999999999999 99999999999888888876 445666543
No 24
>KOG4648|consensus
Probab=97.80 E-value=1.6e-05 Score=75.44 Aligned_cols=112 Identities=11% Similarity=0.058 Sum_probs=75.2
Q ss_pred cccchhhhhhhhcCCcccccchHHHHHHHHhhhhhcccCCcchhHHHHHHHhhHHHHHHhcccchhHhHHhhhhcccccc
Q psy5048 152 NKFLHWDRRFTQKGPMAKNREHIAHRARRDRGKRRIQSFKPHRAESEKLYAHCSSAYALLVKKTPSIHNCFLLSTKSMLT 231 (319)
Q Consensus 152 eek~~~a~~~ke~Gn~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~a~~~c~~vl~~~~l~ 231 (319)
++-+..+..++++||.||++++|..++-+. ..-+. ..|+.. .+..+--.||.+++.+-.|-..|+..+..+.
T Consensus 91 ~~LL~~~SEiKE~GN~yFKQgKy~EAIDCY--s~~ia-~~P~Np---V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-- 162 (536)
T KOG4648|consen 91 QQLLKKASEIKERGNTYFKQGKYEEAIDCY--STAIA-VYPHNP---VYHINRALAYLKQKSFAQAEEDCEAAIALDK-- 162 (536)
T ss_pred HHHHHhhHHHHHhhhhhhhccchhHHHHHh--hhhhc-cCCCCc---cchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--
Confidence 344556677999999999999997654322 11111 111110 1222222367888889999999999999888
Q ss_pred ccCCCCChhHHHHHHHHHHhc-------Cccc-cccCCCChhhHHHHHHHHHH
Q psy5048 232 FARNQSTIPAWTHDYTRLALL-------LPFL-QYEFPPEQSQCLPLLGIRAQ 276 (319)
Q Consensus 232 ~~~~~~NvKALfRrg~~~~~~-------~~~~-a~~~dP~n~~i~~el~~l~~ 276 (319)
.-+||+-|||++...+ .|++ +|+++|.+-+.+..+..++.
T Consensus 163 -----~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 163 -----LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred -----HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 8999999999944333 2233 99999997776666666654
No 25
>KOG0551|consensus
Probab=97.70 E-value=0.00012 Score=69.18 Aligned_cols=115 Identities=10% Similarity=0.030 Sum_probs=77.7
Q ss_pred hhhhhhhhcCCcccccchHHHHHHHHhhhhhcccCCcchhHHHHHHHhhHHHHHHhcccchhHhHHhhhhccccccccCC
Q psy5048 156 HWDRRFTQKGPMAKNREHIAHRARRDRGKRRIQSFKPHRAESEKLYAHCSSAYALLVKKTPSIHNCFLLSTKSMLTFARN 235 (319)
Q Consensus 156 ~~a~~~ke~Gn~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~a~~~c~~vl~~~~l~~~~~ 235 (319)
+.|...|++||.+|+-..|..+. ..+.+-.... .++......||.+-..|...++++..++.-|+.+|..+|
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~-~~Yt~Glk~k-c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P------ 150 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAV-ESYTEGLKKK-CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP------ 150 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHH-HHHHHHHhhc-CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc------
Confidence 48999999999999999886543 2222221111 123344555664444455677999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCcc---------------c-------cccCCCChhhHHHHHHHHHHHHh
Q psy5048 236 QSTIPAWTHDYTRLALLLPF---------------L-------QYEFPPEQSQCLPLLGIRAQHQR 279 (319)
Q Consensus 236 ~~NvKALfRrg~~~~~~~~~---------------~-------a~~~dP~n~~i~~el~~l~~~~k 279 (319)
+|+||+||-|+.+..+.-| + .--++|+++.+..+.+.+.++-.
T Consensus 151 -~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~~l~~k~~~~~L~~er~~rK~~~ 215 (390)
T KOG0551|consen 151 -THLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELRNLIHKNDKLKLIEERDVRKKNA 215 (390)
T ss_pred -chhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhH
Confidence 9999999999944332221 1 22268888888777776655433
No 26
>KOG0550|consensus
Probab=97.44 E-value=0.00025 Score=68.73 Aligned_cols=116 Identities=12% Similarity=0.012 Sum_probs=81.0
Q ss_pred hhhhhhhcCCcccccchHHHHHHHHhhhhhcccCCc-chhHHHHHHHhhHHHHHHhcccchhHhHHhhhhccccccccCC
Q psy5048 157 WDRRFTQKGPMAKNREHIAHRARRDRGKRRIQSFKP-HRAESEKLYAHCSSAYALLVKKTPSIHNCFLLSTKSMLTFARN 235 (319)
Q Consensus 157 ~a~~~ke~Gn~~~~~~~~~~~~~~~~~k~~~~~~k~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~c~~vl~~~~l~~~~~ 235 (319)
.....++.||..|+.+.|..+.- .+-.... ..| +.+....|+.+...+...+.+...+|..|+.++.+|+
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E-~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~------ 318 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYE-CYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS------ 318 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHH-HHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH------
Confidence 45667889999999998854432 2222211 112 2344555664444455777999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHhHhHH
Q psy5048 236 QSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQRGHMI 283 (319)
Q Consensus 236 ~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k~~~~ 283 (319)
.=+|||-|||+.+.++.+|+ |.+.+-+ ..++..|++.+.-++....
T Consensus 319 -syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 319 -SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKR 372 (486)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhh
Confidence 99999999999776666775 6676666 7788888877766554433
No 27
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.38 E-value=0.0004 Score=67.22 Aligned_cols=111 Identities=16% Similarity=0.093 Sum_probs=80.4
Q ss_pred hhhhhcCCcccccchHHHHHHHHhhhhhcccCCcchhHHHHHHHhhHHHHHHhcccchhHhHHhhhhccccccccCCCCC
Q psy5048 159 RRFTQKGPMAKNREHIAHRARRDRGKRRIQSFKPHRAESEKLYAHCSSAYALLVKKTPSIHNCFLLSTKSMLTFARNQST 238 (319)
Q Consensus 159 ~~~ke~Gn~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~N 238 (319)
..+..+|+..+..++|..+...- .+.. ...|... ..+.....++..+..+..|+..|..++..+| +|
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~-~~Al--~~~P~~~---~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-------~~ 69 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLY-TQAI--DLDPNNA---ELYADRAQANIKLGNFTEAVADANKAIELDP-------SL 69 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH-HHHH--HhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------CC
Confidence 34566777777777776443211 1111 1111221 2333334456777999999999999999999 99
Q ss_pred hhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHhHhH
Q psy5048 239 IPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQRGHM 282 (319)
Q Consensus 239 vKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k~~~ 282 (319)
..|+||+|..+..+++|. +++++|.+..+...+.+|..++++..
T Consensus 70 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~~ 121 (356)
T PLN03088 70 AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEE 121 (356)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhh
Confidence 999999999887788876 89999999999999999999987653
No 28
>KOG0376|consensus
Probab=97.27 E-value=0.00025 Score=69.81 Aligned_cols=115 Identities=10% Similarity=-0.023 Sum_probs=80.1
Q ss_pred hhhhhhhcCCcccccchHHHHHHHHhhhhhcccCCcchhHHHHHHHhhHHHHHHhcccchhHhHHhhhhccccccccCCC
Q psy5048 157 WDRRFTQKGPMAKNREHIAHRARRDRGKRRIQSFKPHRAESEKLYAHCSSAYALLVKKTPSIHNCFLLSTKSMLTFARNQ 236 (319)
Q Consensus 157 ~a~~~ke~Gn~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~ 236 (319)
.+...+.++|.+++.+++..++ ..+.|.... .|..+...... ..|..+...+-.|+.-|.+.++.+|
T Consensus 3 ~a~e~k~ean~~l~~~~fd~av-dlysKaI~l--dpnca~~~anR---a~a~lK~e~~~~Al~Da~kaie~dP------- 69 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAV-DLYSKAIEL--DPNCAIYFANR---ALAHLKVESFGGALHDALKAIELDP------- 69 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHH-HHHHHHHhc--CCcceeeechh---hhhheeechhhhHHHHHHhhhhcCc-------
Confidence 4567788899998888885433 111111111 00001100000 0133556778889999999999999
Q ss_pred CChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHhHhHHH
Q psy5048 237 STIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQRGHMIT 284 (319)
Q Consensus 237 ~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k~~~~k 284 (319)
..+||+||||++++.+..|. ...+.|+++++++-+..|..+++++.-+
T Consensus 70 ~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe 125 (476)
T KOG0376|consen 70 TYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFE 125 (476)
T ss_pred hhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999888776664 7789999999999999999999886544
No 29
>KOG0549|consensus
Probab=97.17 E-value=0.00037 Score=60.51 Aligned_cols=56 Identities=48% Similarity=0.680 Sum_probs=45.6
Q ss_pred EeeCCCcccccHhHhhhccccCcEEEEEeCCCCCCCCCCCCCCCCCCCeEEEEEEEeeee
Q psy5048 81 FTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGGLSAVRQSEHSELE 140 (319)
Q Consensus 81 f~lG~~~~i~Gle~al~~Mk~GE~~~v~i~p~~ayG~~g~~~~Ip~~~~l~feVeL~~v~ 140 (319)
|++|.+++|+|.++++.+|+.||++.+++||+++||..+... -..++|.+.++.+-
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~~----~~~~~~~~~l~~~~ 56 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRGD----LNILVITILLVLLF 56 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCccccccccccc----ccceEEEeeeeehh
Confidence 467899999999999999999999999999999999555332 13467777776654
No 30
>KOG0548|consensus
Probab=96.24 E-value=0.0088 Score=59.75 Aligned_cols=105 Identities=17% Similarity=0.075 Sum_probs=83.1
Q ss_pred hhhhhhcCCcccccchHHHHHHHHhhhhhcccCCcchhHHHHHHHhhHHHHHHhcccchhHhHHhhhhccccccccCCCC
Q psy5048 158 DRRFTQKGPMAKNREHIAHRARRDRGKRRIQSFKPHRAESEKLYAHCSSAYALLVKKTPSIHNCFLLSTKSMLTFARNQS 237 (319)
Q Consensus 158 a~~~ke~Gn~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~ 237 (319)
+...+++||..+..+++..+...- ....+.+. . -..|+++-+.|+..+..+..++.-.++..+..| +
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~-t~ai~l~p--~---nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p-------~ 68 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLF-TEAIMLSP--T---NHVLYSNRSAAYASLGSYEKALKDATKTRRLNP-------D 68 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHH-HHHHccCC--C---ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC-------c
Confidence 456789999999999997665422 11222222 1 234777777788999999999999999999888 9
Q ss_pred ChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHH
Q psy5048 238 TIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRA 275 (319)
Q Consensus 238 NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~ 275 (319)
=.|||+|.|-++..+++|+ .|+.||+|+....-|....
T Consensus 69 w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 69 WAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999998899997 8999999998888777665
No 31
>KOG0624|consensus
Probab=95.73 E-value=0.0092 Score=57.06 Aligned_cols=58 Identities=7% Similarity=-0.014 Sum_probs=47.6
Q ss_pred chhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHh
Q psy5048 215 TPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQR 279 (319)
Q Consensus 215 ~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k 279 (319)
-.||.+|+.||+.+| +||-+|--||-++....+|+ |++.+|+|..++.-|.+-++..+
T Consensus 324 ~eAiqqC~evL~~d~-------~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkk 389 (504)
T KOG0624|consen 324 GEAIQQCKEVLDIDP-------DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKK 389 (504)
T ss_pred HHHHHHHHHHHhcCc-------hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 348999999999999 99999999999776544454 99999999999988776554433
No 32
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.26 E-value=0.01 Score=42.64 Aligned_cols=49 Identities=10% Similarity=-0.062 Sum_probs=40.3
Q ss_pred HHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcC-ccc--------cccCCC
Q psy5048 207 AYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLL-PFL--------QYEFPP 262 (319)
Q Consensus 207 ~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~-~~~--------a~~~dP 262 (319)
++....++..|+..++++++.+| +|+.++|+||..+..++ .+. |+++||
T Consensus 12 ~~~~~~~~~~A~~~~~~ai~~~p-------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 12 IYFQQGDYEEAIEYFEKAIELDP-------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHST-------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34567889999999999999999 99999999999777776 454 666665
No 33
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.85 E-value=0.053 Score=38.61 Aligned_cols=57 Identities=9% Similarity=-0.138 Sum_probs=48.5
Q ss_pred hcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHH
Q psy5048 211 LVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIR 274 (319)
Q Consensus 211 ~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l 274 (319)
..++..|+..+..++..+| +|..+++..|..+...+.++ ++..+|+++.+...+.+|
T Consensus 4 ~~~~~~A~~~~~~~l~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNP-------DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTT-------TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 4678889999999999999 99999999999777778886 888999998888877654
No 34
>KOG0544|consensus
Probab=94.26 E-value=0.023 Score=44.32 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=17.6
Q ss_pred CCCCCCCCCCeeecccceEE
Q psy5048 18 KTPCIRPRSTLSLSPYSLSL 37 (319)
Q Consensus 18 ~~p~Ipp~atl~~d~~lv~~ 37 (319)
-++.|||||||.||+|++++
T Consensus 88 ~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 88 HPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred CCCccCCCcEEEEEEEEEec
Confidence 36889999999999999864
No 35
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.83 E-value=0.092 Score=37.88 Aligned_cols=60 Identities=12% Similarity=0.071 Sum_probs=50.4
Q ss_pred HHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHH
Q psy5048 208 YALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIR 274 (319)
Q Consensus 208 ~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l 274 (319)
+.....|..+++.+..++..+| +++-+++-+|..+..++.|. +++..|++.++......|
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p-------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDP-------DDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCc-------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 4556788899999999999999 99999999999777777775 899999988887765544
No 36
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.81 E-value=0.049 Score=38.57 Aligned_cols=50 Identities=12% Similarity=-0.038 Sum_probs=40.8
Q ss_pred HHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChh
Q psy5048 209 ALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQS 265 (319)
Q Consensus 209 ~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~ 265 (319)
....++..|+..+..++..+| +|..|+|..|..+...+.+. +++++|+|+
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~P-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQDP-------DNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCST-------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHcCCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455788899999999999999 99999999999777777775 777888764
No 37
>KOG4642|consensus
Probab=92.63 E-value=0.54 Score=43.14 Aligned_cols=110 Identities=8% Similarity=-0.065 Sum_probs=74.2
Q ss_pred chhhhhhhhcCCcccccchHHHHHHHHhhhhhcccCCcchhHHHHHHHhhHHHHHHhcccchhHhHHhhhhccccccccC
Q psy5048 155 LHWDRRFTQKGPMAKNREHIAHRARRDRGKRRIQSFKPHRAESEKLYAHCSSAYALLVKKTPSIHNCFLLSTKSMLTFAR 234 (319)
Q Consensus 155 ~~~a~~~ke~Gn~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~a~~~c~~vl~~~~l~~~~ 234 (319)
...+.+++++||.+|...+|-.++- .+.+....+.- -...+.+-..|..++.+|.++...|...++.+|
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~-~y~raI~~nP~-----~~~Y~tnralchlk~~~~~~v~~dcrralql~~----- 75 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAID-CYSRAICINPT-----VASYYTNRALCHLKLKHWEPVEEDCRRALQLDP----- 75 (284)
T ss_pred chHHHHHHhccccccchhhhchHHH-HHHHHHhcCCC-----cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh-----
Confidence 4678999999999999998865543 22222211110 001122222255668999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCccc--------c---ccCCCC--hhhHHHHHHHHHHH
Q psy5048 235 NQSTIPAWTHDYTRLALLLPFL--------Q---YEFPPE--QSQCLPLLGIRAQH 277 (319)
Q Consensus 235 ~~~NvKALfRrg~~~~~~~~~~--------a---~~~dP~--n~~i~~el~~l~~~ 277 (319)
+-|||+|=-|+.......|. | ++-.|. --+|-.+|+..+.+
T Consensus 76 --N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~ 129 (284)
T KOG4642|consen 76 --NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK 129 (284)
T ss_pred --HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence 99999999999777766665 2 222222 35788888877655
No 38
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=91.11 E-value=0.76 Score=36.97 Aligned_cols=65 Identities=14% Similarity=-0.007 Sum_probs=52.8
Q ss_pred HHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHH
Q psy5048 207 AYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQ 278 (319)
Q Consensus 207 ~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~ 278 (319)
++....++..++..+..++..+| .|...+|.+|..+...+++. +++++|++..+....+++.+..
T Consensus 60 ~~~~~~~~~~A~~~~~~~~~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 60 CCQMLKEYEEAIDAYALAAALDP-------DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 44556778888888889988888 99999999999776677775 8999999988888877776654
No 39
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.88 E-value=0.14 Score=31.37 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHhcCccc--------cccCCCCh
Q psy5048 239 IPAWTHDYTRLALLLPFL--------QYEFPPEQ 264 (319)
Q Consensus 239 vKALfRrg~~~~~~~~~~--------a~~~dP~n 264 (319)
++++|++|..+..+++++ |+++||+|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 478999999777778876 88899975
No 40
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=90.72 E-value=0.94 Score=37.77 Aligned_cols=59 Identities=8% Similarity=-0.092 Sum_probs=47.3
Q ss_pred HHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHH
Q psy5048 207 AYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLG 272 (319)
Q Consensus 207 ~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~ 272 (319)
+...+.++..|+..+..++..+| ++.-++|++|..+..++++. |++++|.+.....-+.
T Consensus 67 ~~~~~g~~~~A~~~y~~Al~l~p-------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 67 TWMMLKEYTTAINFYGHALMLDA-------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45677888999999999999888 99999999999777677765 8889999876664333
No 41
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=89.42 E-value=0.68 Score=38.62 Aligned_cols=69 Identities=7% Similarity=-0.106 Sum_probs=56.4
Q ss_pred HHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHH
Q psy5048 207 AYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQ 278 (319)
Q Consensus 207 ~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~ 278 (319)
+......+..++..|..++..+| .|.-+++.+|..+...+.+. |++++|.+.++..-+..+-.+.
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~P-------~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQP-------WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 33566888899999999999999 99999999999777777775 9999999998888887766554
Q ss_pred hHhH
Q psy5048 279 RGHM 282 (319)
Q Consensus 279 k~~~ 282 (319)
.+..
T Consensus 106 g~~~ 109 (144)
T PRK15359 106 GEPG 109 (144)
T ss_pred CCHH
Confidence 4433
No 42
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.19 E-value=0.39 Score=30.06 Aligned_cols=29 Identities=3% Similarity=-0.236 Sum_probs=23.4
Q ss_pred HhhhhccccccccCCCCChhHHHHHHHHHHhcCccc
Q psy5048 221 CFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL 256 (319)
Q Consensus 221 c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~ 256 (319)
|++.++.+| +|+.|+|..|..+...++++
T Consensus 2 y~kAie~~P-------~n~~a~~nla~~~~~~g~~~ 30 (34)
T PF13431_consen 2 YKKAIELNP-------NNAEAYNNLANLYLNQGDYE 30 (34)
T ss_pred hHHHHHHCC-------CCHHHHHHHHHHHHHCcCHH
Confidence 567778888 99999999999776666654
No 43
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=86.72 E-value=1.6 Score=42.14 Aligned_cols=63 Identities=8% Similarity=-0.059 Sum_probs=51.7
Q ss_pred HHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHH
Q psy5048 209 ALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQ 278 (319)
Q Consensus 209 ~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~ 278 (319)
.....+..|+..+..+++.+| +|..+++.||..+..++.+. |++++|.+..+...+..+-...
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P-------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDP-------NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 345788899999999999999 99999999999887777775 9999999887776665554443
No 44
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=85.50 E-value=0.56 Score=35.85 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=20.7
Q ss_pred cccCCCCCCCCCCCCCCCCCCeeecccce
Q psy5048 7 LPFGENRNPFYKTPCIRPRSTLSLSPYSL 35 (319)
Q Consensus 7 ~~~g~~g~~~~~~p~Ipp~atl~~d~~lv 35 (319)
++||..|.. .+.|||+++|.|+++++
T Consensus 69 ~ayg~~~~~---~~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 69 LAYGEKGLE---PPKIPPNSTLVFEIELL 94 (94)
T ss_dssp GTTTTTTBC---TTTBTTTSEEEEEEEEE
T ss_pred hhcCccccC---CCCcCCCCeEEEEEEEC
Confidence 678888753 14599999999999875
No 45
>KOG1308|consensus
Probab=84.72 E-value=0.44 Score=45.69 Aligned_cols=132 Identities=13% Similarity=0.037 Sum_probs=82.5
Q ss_pred CccccchhhhhhhhcCCcccccchHHHHHHHHhhhhhcccCCcchhHHHHHHHhhHHHHHHhcccchhHhHHhhhhcccc
Q psy5048 150 IPNKFLHWDRRFTQKGPMAKNREHIAHRARRDRGKRRIQSFKPHRAESEKLYAHCSSAYALLVKKTPSIHNCFLLSTKSM 229 (319)
Q Consensus 150 ~~eek~~~a~~~ke~Gn~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~a~~~c~~vl~~~~ 229 (319)
..+|.++.+.+.+.+....+..+++..++. ..-.. ... ---+..++.+--++..++.+++.+|+.|...++.++
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~-~~t~a--i~l---np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~ 179 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIE-LFTSA--IEL---NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINP 179 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhc-ccccc--ccc---CCchhhhcccccceeeeccCCchhhhhhhhhhccCc
Confidence 345666666666665555555554422211 00000 001 011223443334455788999999999999999888
Q ss_pred ccccCCCCChhHHHHHHHHHHhcCccc--------c--ccCCCChhhHHHHHHHHHHHHhHhHHHH-HHHHHhccc
Q psy5048 230 LTFARNQSTIPAWTHDYTRLALLLPFL--------Q--YEFPPEQSQCLPLLGIRAQHQRGHMITQ-GSLYFFLFY 294 (319)
Q Consensus 230 l~~~~~~~NvKALfRrg~~~~~~~~~~--------a--~~~dP~n~~i~~el~~l~~~~k~~~~ke-k~~y~~mF~ 294 (319)
+..|.+==||.+..+++.|+ | +.+|+.+.++..|..--..++++++.+. +.+=..||.
T Consensus 180 -------Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~~~ 248 (377)
T KOG1308|consen 180 -------DSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAREEREIK 248 (377)
T ss_pred -------ccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHHHhccc
Confidence 99999988888777777775 3 4466778888888777777777776553 444445553
No 46
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.13 E-value=2.5 Score=29.43 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=19.3
Q ss_pred cccCCCChhhHHHHHHHHHHHHh
Q psy5048 257 QYEFPPEQSQCLPLLGIRAQHQR 279 (319)
Q Consensus 257 a~~~dP~n~~i~~el~~l~~~~k 279 (319)
+|+++|+|+.+......++.+++
T Consensus 27 lL~~eP~N~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 27 LLEIEPDNRQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHTTS-HHHHHHHHHHHHHHH
T ss_pred HHhhCCCcHHHHHHHHHHHHHHh
Confidence 89999999999998888887765
No 47
>KOG0624|consensus
Probab=79.97 E-value=17 Score=35.39 Aligned_cols=64 Identities=13% Similarity=0.076 Sum_probs=42.2
Q ss_pred chhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHhHhHHHH
Q psy5048 215 TPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQRGHMITQ 285 (319)
Q Consensus 215 ~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k~~~~ke 285 (319)
+.||.-.+.+..... +|+-++|.-.+-+-..++-+ .|++||+.+-+-.-+++|++-.|.-..-+
T Consensus 206 k~AI~Dlk~askLs~-------DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 206 KKAIHDLKQASKLSQ-------DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred HHHHHHHHHHHhccc-------cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444 99999999999332233332 99999999988888888876655444333
No 48
>KOG1310|consensus
Probab=78.79 E-value=5 Score=40.90 Aligned_cols=110 Identities=11% Similarity=0.018 Sum_probs=64.0
Q ss_pred hhhhhhhhcCCcccccchHHHHHHHHhhhhhcccCCcchhHHHHHHHhhHHHH-HHhcccch----hHhHHhhhhccccc
Q psy5048 156 HWDRRFTQKGPMAKNREHIAHRARRDRGKRRIQSFKPHRAESEKLYAHCSSAY-ALLVKKTP----SIHNCFLLSTKSML 230 (319)
Q Consensus 156 ~~a~~~ke~Gn~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~l~~~~~~~~-~~~~~~~~----a~~~c~~vl~~~~l 230 (319)
+.++..+++||..+-......++. .+.+..+.. .. ..+.-|+-|+ .++.+|.- |+.-|...|+.+|
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~-~~s~a~q~~-----~~--~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~- 442 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAIS-HYSRAIQYV-----PD--AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNP- 442 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHH-HHHHHhhhc-----cc--hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCCh-
Confidence 567888899998655554433221 111111111 11 1222233333 44455654 7889999999998
Q ss_pred cccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHhH
Q psy5048 231 TFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQRG 280 (319)
Q Consensus 231 ~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k~ 280 (319)
...||.||-+.++..+.-+. ++.-.|.|.+..+-.--+..-+++
T Consensus 443 ------s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~a 494 (758)
T KOG1310|consen 443 ------SIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPRDISA 494 (758)
T ss_pred ------HHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccccchHH
Confidence 99999999988776543332 455677676665555555544444
No 49
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=77.47 E-value=6.1 Score=27.75 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=35.9
Q ss_pred CChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHh
Q psy5048 237 STIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQR 279 (319)
Q Consensus 237 ~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k 279 (319)
+|..+++++|..+...++|. |+++||++..+..-+..+-.++.
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~ 51 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG 51 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 37788999999777777776 99999999999988888876665
No 50
>PRK11189 lipoprotein NlpI; Provisional
Probab=76.02 E-value=7.3 Score=36.41 Aligned_cols=49 Identities=8% Similarity=-0.128 Sum_probs=40.5
Q ss_pred hcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhh
Q psy5048 211 LVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQ 266 (319)
Q Consensus 211 ~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~ 266 (319)
...+..|+.....+++.+| +|..|++.||..+...+.++ +++++|++..
T Consensus 111 ~g~~~~A~~~~~~Al~l~P-------~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELDP-------TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred CCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 3777889999999999888 99999999999666566665 8889999863
No 51
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=74.87 E-value=17 Score=30.84 Aligned_cols=107 Identities=8% Similarity=-0.060 Sum_probs=67.0
Q ss_pred HHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHH
Q psy5048 207 AYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQ 278 (319)
Q Consensus 207 ~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~ 278 (319)
.+.....+..|+..+..++...+ ....+.-+++..|..+...+.++ ++.++|.+......+..+-..+
T Consensus 44 ~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 119 (172)
T PRK02603 44 SAQADGEYAEALENYEEALKLEE----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKR 119 (172)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhh----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 34556888888999988887554 00123578888888666667765 7888888876665554444333
Q ss_pred hHh-------------HHHHHHHHHhcccCCCCCCchhhhhhcccCCCCCCC
Q psy5048 279 RGH-------------MITQGSLYFFLFYNMSSPLNKVNAYLCSESEHNTSV 317 (319)
Q Consensus 279 k~~-------------~~kek~~y~~mF~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
.+. ..+-.+.|......-+.....+..|+.+-.+-|..|
T Consensus 120 g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~ 171 (172)
T PRK02603 120 GEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTGRSNIDV 171 (172)
T ss_pred CChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhcCccccCc
Confidence 221 233344556666555555556777877777666544
No 52
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=74.85 E-value=4.8 Score=35.49 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=18.0
Q ss_pred CChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHH
Q psy5048 237 STIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGI 273 (319)
Q Consensus 237 ~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~ 273 (319)
+|+.+++..|..+...++++ |++++|+|.++...+..
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~ 115 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT 115 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 55555555555444444443 44555555555444443
No 53
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=74.47 E-value=2.7 Score=27.41 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHH
Q psy5048 241 AWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGI 273 (319)
Q Consensus 241 ALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~ 273 (319)
+++..|..+...++++ +++.+|+|.++...|..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 5666677666666665 88899999988877754
No 54
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=73.62 E-value=2.1 Score=25.62 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHhcCccc--------cccCCCCh
Q psy5048 240 PAWTHDYTRLALLLPFL--------QYEFPPEQ 264 (319)
Q Consensus 240 KALfRrg~~~~~~~~~~--------a~~~dP~n 264 (319)
+++|+.|..+...+++. +++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 67889999777677775 77788765
No 55
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=73.35 E-value=11 Score=38.95 Aligned_cols=57 Identities=11% Similarity=-0.003 Sum_probs=36.1
Q ss_pred hcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHH
Q psy5048 211 LVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIR 274 (319)
Q Consensus 211 ~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l 274 (319)
+.++..++..+.++++.+| +|..++|.+|+.+...++++ +++++|++..+...|..+
T Consensus 378 ~g~~~eA~~~~~~al~~~p-------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLNS-------EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred CCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 3455666666666666666 77777777777555555554 667777766555544443
No 56
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=73.11 E-value=27 Score=23.93 Aligned_cols=65 Identities=11% Similarity=-0.008 Sum_probs=46.1
Q ss_pred HHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHhH
Q psy5048 209 ALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQRG 280 (319)
Q Consensus 209 ~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k~ 280 (319)
....++..++..+..++...| .+..+++.+|..+...+++. ++...|.+..+...+..+-....+
T Consensus 11 ~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 11 YKLGDYDEALEYYEKALELDP-------DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHhcHHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 345677888999999988887 78889999988555445443 777888887666666555544443
No 57
>KOG4151|consensus
Probab=71.58 E-value=4.5 Score=42.68 Aligned_cols=104 Identities=13% Similarity=0.026 Sum_probs=61.8
Q ss_pred hhhhhhhhcCCcccccchHHHHHHHHhhhhhcccCCcchhHHHHHHHhhHHHH--HHhcccchhHhHHhhhhcccccccc
Q psy5048 156 HWDRRFTQKGPMAKNREHIAHRARRDRGKRRIQSFKPHRAESEKLYAHCSSAY--ALLVKKTPSIHNCFLLSTKSMLTFA 233 (319)
Q Consensus 156 ~~a~~~ke~Gn~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~l~~~~~~~~--~~~~~~~~a~~~c~~vl~~~~l~~~ 233 (319)
.-+-..+++||..+....|...-+.- ....+...+.+ -...-+++.--.|+ ..+..|..++..|++++...|
T Consensus 51 ~ra~~~~~E~n~~~~K~d~~~~~~~~-~~~~~llp~~~-~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p---- 124 (748)
T KOG4151|consen 51 SRALELKEEGNKLFQKRDYEGAMFRY-DCAIKLLPKDH-HVVATLRSNQASCYMQLGLGEYPKAIPECELALESQP---- 124 (748)
T ss_pred HHHHHHHhhhhHHhhhhhhhccchhh-hhhheeccccc-hhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccc----
Confidence 45677889999998888775432111 11111111111 11111221111222 344888999999999999888
Q ss_pred CCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHH
Q psy5048 234 RNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCL 268 (319)
Q Consensus 234 ~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~ 268 (319)
.-.|||+||+..+..++-++ ....+|.|.+..
T Consensus 125 ---~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~ 164 (748)
T KOG4151|consen 125 ---RISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSAS 164 (748)
T ss_pred ---hHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 99999999888555443321 667888875443
No 58
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=70.74 E-value=11 Score=29.99 Aligned_cols=65 Identities=8% Similarity=-0.059 Sum_probs=49.5
Q ss_pred HHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHhH
Q psy5048 209 ALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQRG 280 (319)
Q Consensus 209 ~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k~ 280 (319)
....++..++..-..++..+| +|..+++++|..+...+++. +++++|.+.++...+..+-.....
T Consensus 28 ~~~~~~~~A~~~~~~~~~~~p-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 28 YQQGRYDEALKLFQLLAAYDP-------YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHcccHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence 445667777777777777777 99999999999665555554 788999999998888777665543
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=68.27 E-value=26 Score=29.51 Aligned_cols=56 Identities=11% Similarity=-0.079 Sum_probs=28.5
Q ss_pred HhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHH
Q psy5048 210 LLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLG 272 (319)
Q Consensus 210 ~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~ 272 (319)
....+..++..+..++..+| +|..+++.+|..+...+++. +++++|.+..+...+.
T Consensus 43 ~~~~~~~A~~~~~~~l~~~p-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHDP-------DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG 106 (234)
T ss_pred HCCCHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 33445555555555555555 55555555555444444443 5555555544444433
No 60
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=67.89 E-value=16 Score=27.91 Aligned_cols=50 Identities=8% Similarity=-0.166 Sum_probs=36.8
Q ss_pred HHhcccchhHhHHhhhhccccccccCCCCC---hhHHHHHHHHHHhcCccc--------cccCCCChh
Q psy5048 209 ALLVKKTPSIHNCFLLSTKSMLTFARNQST---IPAWTHDYTRLALLLPFL--------QYEFPPEQS 265 (319)
Q Consensus 209 ~~~~~~~~a~~~c~~vl~~~~l~~~~~~~N---vKALfRrg~~~~~~~~~~--------a~~~dP~n~ 265 (319)
....++..++..|..++...| +| ..++|..|..+...+++. ++..+|.+.
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 13 LKAGDYADAIQAFQAFLKKYP-------KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred HHcCCHHHHHHHHHHHHHHCC-------CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence 445777888888888888776 54 578888888666666664 677778764
No 61
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=67.25 E-value=11 Score=41.68 Aligned_cols=78 Identities=9% Similarity=-0.117 Sum_probs=63.0
Q ss_pred HhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHhHh
Q psy5048 210 LLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQRGH 281 (319)
Q Consensus 210 ~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k~~ 281 (319)
...++..|+..+..+++.+| +|.-+++.-++.+...+.++ ++++||+|+.....|..+ ..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP-------~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i-----~~ 123 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVP-------DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI-----PV 123 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-----cc
Confidence 34778889999999999999 99888888888777777765 999999999988888666 55
Q ss_pred HHHHHHHHHhcccCCCCC
Q psy5048 282 MITQGSLYFFLFYNMSSP 299 (319)
Q Consensus 282 ~~kek~~y~~mF~~~~~~ 299 (319)
..+....|..|...-++.
T Consensus 124 ~~kA~~~ye~l~~~~P~n 141 (987)
T PRK09782 124 EVKSVTTVEELLAQQKAC 141 (987)
T ss_pred ChhHHHHHHHHHHhCCCC
Confidence 667778888887765543
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=66.67 E-value=17 Score=34.01 Aligned_cols=59 Identities=15% Similarity=-0.004 Sum_probs=41.6
Q ss_pred HHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHH
Q psy5048 208 YALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGI 273 (319)
Q Consensus 208 ~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~ 273 (319)
+.....+..|+.....++..+| +|.-|++.+|..+...++++ |++++|++..+..-+..
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~P-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALRP-------DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3455667777777777888777 88888888888666666665 77888887665544433
No 63
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=66.42 E-value=3 Score=37.82 Aligned_cols=42 Identities=14% Similarity=0.156 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHhHhHHHHHH----------------HHHhcccCCCCCCchhhhh
Q psy5048 265 SQCLPLLGIRAQHQRGHMITQGS----------------LYFFLFYNMSSPLNKVNAY 306 (319)
Q Consensus 265 ~~i~~el~~l~~~~k~~~~kek~----------------~y~~mF~~~~~~~~~~~~~ 306 (319)
+.+...|++|..++.|+.+||++ .|.+||++|-....+.+.|
T Consensus 120 KtA~~~~rKl~~ke~E~~EKErqlSeAeEn~kl~mkei~tY~~~fQ~~Qel~~RaEdy 177 (265)
T PF06409_consen 120 KTAKKHLRKLSMKECEHAEKERQLSEAEENGKLAMKEIHTYKQMFQRMQELQQRAEDY 177 (265)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455578888888888777764 3888888776655555444
No 64
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=66.02 E-value=14 Score=40.91 Aligned_cols=63 Identities=10% Similarity=-0.231 Sum_probs=50.8
Q ss_pred HHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHH
Q psy5048 209 ALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQ 278 (319)
Q Consensus 209 ~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~ 278 (319)
.....+..++..+..+++.+| +|..++|.+|..+..+++++ |++++|++.+|.-+...+.++.
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P-------~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLP-------DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 444677778888888888888 99999999999777777775 8899999999987777666553
No 65
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=64.88 E-value=31 Score=36.68 Aligned_cols=90 Identities=6% Similarity=-0.165 Sum_probs=61.9
Q ss_pred HHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHhH
Q psy5048 209 ALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQRG 280 (319)
Q Consensus 209 ~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k~ 280 (319)
..+.++..|+..|..+|..+| +|.-|++-+|+.+..++.++ ++.-+|++..+...+..+=...-+
T Consensus 131 ~~~~~~eeA~~~~~~~l~~~p-------~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~ 203 (694)
T PRK15179 131 KRQQGIEAGRAEIELYFSGGS-------SSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA 203 (694)
T ss_pred HHhccHHHHHHHHHHHhhcCC-------CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 555788889999999999999 99999999999888888886 666788877777776665444333
Q ss_pred hHHHHHHHHHhcccCCCCCCchhhhh
Q psy5048 281 HMITQGSLYFFLFYNMSSPLNKVNAY 306 (319)
Q Consensus 281 ~~~kek~~y~~mF~~~~~~~~~~~~~ 306 (319)
. +.-...|..-+...+...-|++.+
T Consensus 204 ~-~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 204 L-WRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred H-HHHHHHHHHHHHhhCcchHHHHHH
Confidence 2 233344554444444444343333
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=62.77 E-value=18 Score=33.18 Aligned_cols=60 Identities=13% Similarity=-0.053 Sum_probs=46.2
Q ss_pred HHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHH
Q psy5048 207 AYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGI 273 (319)
Q Consensus 207 ~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~ 273 (319)
.+.-......|.+...++|++|| ++.-|+-=||-.+...++-+ |+.++|.|-+|.+=+--
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DP-------s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDP-------SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 33444666678888889999999 99999999988666654443 99999999999876553
No 67
>KOG1127|consensus
Probab=62.28 E-value=12 Score=40.89 Aligned_cols=77 Identities=9% Similarity=-0.078 Sum_probs=56.0
Q ss_pred hcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCc-cc--------cccCCCChhhHHHHHHHHHHHHhHh
Q psy5048 211 LVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLP-FL--------QYEFPPEQSQCLPLLGIRAQHQRGH 281 (319)
Q Consensus 211 ~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~-~~--------a~~~dP~n~~i~~el~~l~~~~k~~ 281 (319)
-+.|..++++|++||..|| +|--|.+=-|.++..+.. -+ |.++||+|--+=.-|-.|=++.-..
T Consensus 15 nk~YeealEqskkvLk~dp-------dNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dI 87 (1238)
T KOG1127|consen 15 NKEYEEALEQSKKVLKEDP-------DNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDI 87 (1238)
T ss_pred hccHHHHHHHHHHHHhcCC-------CcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchh
Confidence 3678999999999999999 999999999998877655 22 9999999976666666655554444
Q ss_pred HHHHH--HHHHhccc
Q psy5048 282 MITQG--SLYFFLFY 294 (319)
Q Consensus 282 ~~kek--~~y~~mF~ 294 (319)
+..++ +.|+..|-
T Consensus 88 l~ld~~~~~yq~~~l 102 (1238)
T KOG1127|consen 88 LDLDRAAKCYQRAVL 102 (1238)
T ss_pred hhhhHhHHHHHHHHH
Confidence 44433 24444443
No 68
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=62.07 E-value=40 Score=29.65 Aligned_cols=61 Identities=8% Similarity=-0.221 Sum_probs=44.7
Q ss_pred HHHHhcccchhHhHHhhhhccccccccCCCCChh---HHHHHHHHHHhc--------Cccc--------cccCCCChhhH
Q psy5048 207 AYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIP---AWTHDYTRLALL--------LPFL--------QYEFPPEQSQC 267 (319)
Q Consensus 207 ~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvK---ALfRrg~~~~~~--------~~~~--------a~~~dP~n~~i 267 (319)
++....++..|+..+..+++..| +|.. |+|.+|..+..+ +.++ ++..+|++..+
T Consensus 79 ~~~~~~~~~~A~~~~~~~l~~~p-------~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 151 (235)
T TIGR03302 79 AYYKSGDYAEAIAAADRFIRLHP-------NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA 151 (235)
T ss_pred HHHhcCCHHHHHHHHHHHHHHCc-------CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH
Confidence 44666889999999999999988 7776 899999944322 2222 77889998766
Q ss_pred HHHHHHH
Q psy5048 268 LPLLGIR 274 (319)
Q Consensus 268 ~~el~~l 274 (319)
...+..+
T Consensus 152 ~~a~~~~ 158 (235)
T TIGR03302 152 PDAKKRM 158 (235)
T ss_pred HHHHHHH
Confidence 5555444
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=61.43 E-value=22 Score=36.31 Aligned_cols=51 Identities=6% Similarity=-0.247 Sum_probs=39.3
Q ss_pred hcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHH
Q psy5048 211 LVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCL 268 (319)
Q Consensus 211 ~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~ 268 (319)
...+..|+..+..+++.+| +|.-|+|..|..+...+.++ +++++|.+..+.
T Consensus 351 ~g~~~~A~~~~~~Al~l~P-------~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~ 409 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSP-------ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG 409 (553)
T ss_pred ccCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH
Confidence 3666678888888888888 88999998888666666665 888899876553
No 70
>PLN02789 farnesyltranstransferase
Probab=58.85 E-value=32 Score=32.88 Aligned_cols=79 Identities=8% Similarity=-0.055 Sum_probs=59.3
Q ss_pred ccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCcc----c------cccCCCChhhHHHHHHHHHHHHhHhH
Q psy5048 213 KKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPF----L------QYEFPPEQSQCLPLLGIRAQHQRGHM 282 (319)
Q Consensus 213 ~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~----~------a~~~dP~n~~i~~el~~l~~~~k~~~ 282 (319)
.+..++..|..++..+| +|.-|++.|+..+..++.+ + ++++||.|-.+-....-+-++... .
T Consensus 87 ~l~eeL~~~~~~i~~np-------knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~-~ 158 (320)
T PLN02789 87 DLEEELDFAEDVAEDNP-------KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG-W 158 (320)
T ss_pred hHHHHHHHHHHHHHHCC-------cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh-H
Confidence 45778999999999888 9999999998744443331 1 899999999888887777777655 4
Q ss_pred HHHHHHHHhcccCCCCC
Q psy5048 283 ITQGSLYFFLFYNMSSP 299 (319)
Q Consensus 283 ~kek~~y~~mF~~~~~~ 299 (319)
+++=..|.+|...-++.
T Consensus 159 ~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 159 EDELEYCHQLLEEDVRN 175 (320)
T ss_pred HHHHHHHHHHHHHCCCc
Confidence 56777888887754433
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=55.22 E-value=60 Score=27.20 Aligned_cols=62 Identities=6% Similarity=-0.288 Sum_probs=43.6
Q ss_pred HHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHH
Q psy5048 207 AYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRA 275 (319)
Q Consensus 207 ~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~ 275 (319)
++.....+..++..+..++..+| ++..+++..|..+...++++ ++++.|.+......+..+.
T Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (234)
T TIGR02521 144 CALKAGDFDKAEKYLTRALQIDP-------QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIA 213 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34555777888888888888877 88888888888666666665 5566677665555444443
No 72
>PLN02789 farnesyltranstransferase
Probab=55.00 E-value=18 Score=34.50 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=40.1
Q ss_pred HHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhc---Ccc------c------cccCCCChhhHHHHHHH
Q psy5048 209 ALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALL---LPF------L------QYEFPPEQSQCLPLLGI 273 (319)
Q Consensus 209 ~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~---~~~------~------a~~~dP~n~~i~~el~~ 273 (319)
..+..|..++..|...++.++ .|--|++.|+..+..+ +.+ + +++++|+|..+-.=++.
T Consensus 153 ~~l~~~~eeL~~~~~~I~~d~-------~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ 225 (320)
T PLN02789 153 RTLGGWEDELEYCHQLLEEDV-------RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRG 225 (320)
T ss_pred HHhhhHHHHHHHHHHHHHHCC-------CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 444667788899999988888 8899999998743221 111 1 77888888766544444
Q ss_pred H
Q psy5048 274 R 274 (319)
Q Consensus 274 l 274 (319)
+
T Consensus 226 l 226 (320)
T PLN02789 226 L 226 (320)
T ss_pred H
Confidence 4
No 73
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=54.40 E-value=16 Score=27.87 Aligned_cols=62 Identities=15% Similarity=-0.083 Sum_probs=43.5
Q ss_pred HHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHH
Q psy5048 207 AYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLG 272 (319)
Q Consensus 207 ~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~ 272 (319)
++....++..|+..+..++..+| .++...-+++..|..+..++++. +++..|++..+..-++
T Consensus 48 ~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 48 AYYAQGKYADAAKAFLAVVKKYP----KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred HHHhhccHHHHHHHHHHHHHHCC----CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 44666888889999999999877 11123568999998666666654 7777888766554443
No 74
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=53.73 E-value=50 Score=35.31 Aligned_cols=65 Identities=6% Similarity=-0.229 Sum_probs=46.8
Q ss_pred HHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHhH
Q psy5048 209 ALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQRG 280 (319)
Q Consensus 209 ~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k~ 280 (319)
.....+..|+..+..++...| +|.-+++.+|..+...+.+. |++++|+|..+...+..+.....+
T Consensus 370 ~~~g~~~eA~~~l~~al~~~P-------~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNAP-------GNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Confidence 445777778888888888888 88888888888665555554 888888887766666665555444
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=53.58 E-value=19 Score=36.85 Aligned_cols=57 Identities=5% Similarity=-0.097 Sum_probs=46.1
Q ss_pred cchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHH
Q psy5048 214 KTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQH 277 (319)
Q Consensus 214 ~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~ 277 (319)
+..|+..+.++++.+| +|..|++.+|..+...++++ |++++|++.++...|..+-..
T Consensus 320 ~~~A~~~~~~Al~ldP-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 384 (553)
T PRK12370 320 MIKAKEHAIKATELDH-------NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM 384 (553)
T ss_pred HHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4568889999999998 99999999999666666665 899999999888777655443
No 76
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=53.47 E-value=68 Score=28.10 Aligned_cols=81 Identities=11% Similarity=-0.113 Sum_probs=46.2
Q ss_pred HHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHH-HhcCcc--c--------cccCCCChhhHHHHHHHHHHH
Q psy5048 209 ALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRL-ALLLPF--L--------QYEFPPEQSQCLPLLGIRAQH 277 (319)
Q Consensus 209 ~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~-~~~~~~--~--------a~~~dP~n~~i~~el~~l~~~ 277 (319)
....++..|+..+..++..+| +|.-+++-.|..+ ...+.+ . ++++||+|..+...|......
T Consensus 84 ~~~g~~~~A~~a~~~Al~l~P-------~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~ 156 (198)
T PRK10370 84 LWRNDYDNALLAYRQALQLRG-------ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM 156 (198)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 445666667777777777666 7777777777632 333332 1 677777777766666655544
Q ss_pred HhHhHHHHHHHHHhcccCCC
Q psy5048 278 QRGHMITQGSLYFFLFYNMS 297 (319)
Q Consensus 278 ~k~~~~kek~~y~~mF~~~~ 297 (319)
..++ ++-...|..+..-.+
T Consensus 157 ~g~~-~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 157 QADY-AQAIELWQKVLDLNS 175 (198)
T ss_pred cCCH-HHHHHHHHHHHhhCC
Confidence 3332 233344455544443
No 77
>KOG0553|consensus
Probab=52.38 E-value=61 Score=30.75 Aligned_cols=62 Identities=8% Similarity=-0.030 Sum_probs=48.2
Q ss_pred hHHHHHHHhhHHHHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCCh
Q psy5048 195 AESEKLYAHCSSAYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQ 264 (319)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n 264 (319)
+++.+|..+-+.+ .+-..|..|+..=+..++.+| .|.==|--||+++..+++|+ |+.+||.-
T Consensus 79 ~~AE~LK~eGN~~-m~~~~Y~eAv~kY~~AI~l~P-------~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y 148 (304)
T KOG0553|consen 79 ALAESLKNEGNKL-MKNKDYQEAVDKYTEAIELDP-------TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY 148 (304)
T ss_pred HHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHhcCC-------CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH
Confidence 4455555444433 344778999999999999999 99888888899888888886 99999994
No 78
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=51.44 E-value=21 Score=33.67 Aligned_cols=54 Identities=11% Similarity=-0.061 Sum_probs=41.6
Q ss_pred HhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHH
Q psy5048 218 IHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQ 278 (319)
Q Consensus 218 ~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~ 278 (319)
+......|..+| +|++-+..-|+.++..+++. |++++|+|.++...|...==.+
T Consensus 142 ~a~Le~~L~~nP-------~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~ 203 (287)
T COG4235 142 IARLETHLQQNP-------GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQ 203 (287)
T ss_pred HHHHHHHHHhCC-------CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 444555566777 99999999999888887775 8999999998888776544333
No 79
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=50.90 E-value=78 Score=27.77 Aligned_cols=55 Identities=9% Similarity=-0.155 Sum_probs=43.5
Q ss_pred HHHHhcccchhHhHHhhhhccccccccCCCCC---hhHHHHHHHHHHhcCccc--------cccCCCChhhHH
Q psy5048 207 AYALLVKKTPSIHNCFLLSTKSMLTFARNQST---IPAWTHDYTRLALLLPFL--------QYEFPPEQSQCL 268 (319)
Q Consensus 207 ~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~N---vKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~ 268 (319)
++.....+..++.....++...| +| ..|+|+.|..+...++++ +++.+|++..+.
T Consensus 42 ~~~~~~~~~~A~~~~~~~~~~~p-------~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 42 EALDSGDYTEAIKYFEALESRYP-------FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-------CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 34556788889999999988877 55 489999999777777776 888999987753
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=48.66 E-value=84 Score=32.20 Aligned_cols=87 Identities=11% Similarity=0.009 Sum_probs=66.8
Q ss_pred HHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHh
Q psy5048 208 YALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQR 279 (319)
Q Consensus 208 ~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k 279 (319)
+.....+..|+....+++++.| ..+--++.+|+.+-..+++. |..+|+.||=|+.-..+ -..+
T Consensus 204 yd~~g~~~~Al~~Id~aI~htP-------t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aK--y~LR 274 (517)
T PF12569_consen 204 YDYLGDYEKALEYIDKAIEHTP-------TLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAK--YLLR 274 (517)
T ss_pred HHHhCCHHHHHHHHHHHHhcCC-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHH--HHHH
Confidence 3456888899999999999999 99999999999666667775 89999999988875443 3445
Q ss_pred HhHHHHHHHHHhcccCCC-CCCchh
Q psy5048 280 GHMITQGSLYFFLFYNMS-SPLNKV 303 (319)
Q Consensus 280 ~~~~kek~~y~~mF~~~~-~~~~~~ 303 (319)
.-.-+++..-.+||-+.. ++..-+
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L 299 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNL 299 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCH
Confidence 555666666678998877 444433
No 81
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=47.98 E-value=8.7 Score=22.92 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHhcCccc--------cccCCCC
Q psy5048 240 PAWTHDYTRLALLLPFL--------QYEFPPE 263 (319)
Q Consensus 240 KALfRrg~~~~~~~~~~--------a~~~dP~ 263 (319)
+++|..|+.+..+++++ +++++|.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57888888777677775 5555553
No 82
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=46.68 E-value=40 Score=35.35 Aligned_cols=57 Identities=9% Similarity=-0.120 Sum_probs=32.4
Q ss_pred hcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHH
Q psy5048 211 LVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIR 274 (319)
Q Consensus 211 ~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l 274 (319)
..++..|+..+..++..+| +|..|++..|..+...+++. +++++|.+..+...+..+
T Consensus 89 ~g~~~~A~~~l~~~l~~~P-------~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~ 153 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNV-------CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRT 153 (656)
T ss_pred cCCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 4555556666666666666 66666666666444444443 555666665555544444
No 83
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=45.02 E-value=76 Score=33.29 Aligned_cols=79 Identities=5% Similarity=-0.135 Sum_probs=55.5
Q ss_pred HHhcccch----hHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHH
Q psy5048 209 ALLVKKTP----SIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQ 276 (319)
Q Consensus 209 ~~~~~~~~----a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~ 276 (319)
.....+.. ++..+..++..+| ++..+++..|..+...+.++ +++++|++.++...|..+-.
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~l~P-------~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~ 329 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQFNS-------DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALR 329 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33455553 7888999999888 99999999999777667665 88899999988877766554
Q ss_pred HHhHhHHHHHHHHHhcccC
Q psy5048 277 HQRGHMITQGSLYFFLFYN 295 (319)
Q Consensus 277 ~~k~~~~kek~~y~~mF~~ 295 (319)
.... ...-...|..+...
T Consensus 330 ~~G~-~~eA~~~l~~al~~ 347 (656)
T PRK15174 330 QVGQ-YTAASDEFVQLARE 347 (656)
T ss_pred HCCC-HHHHHHHHHHHHHh
Confidence 4333 33334445555543
No 84
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=44.63 E-value=49 Score=33.21 Aligned_cols=44 Identities=5% Similarity=-0.253 Sum_probs=36.2
Q ss_pred HHHHHhcccchhHhHHhhhhccccccccCCCCChhH---HHHHHHHHHhcCccc
Q psy5048 206 SAYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPA---WTHDYTRLALLLPFL 256 (319)
Q Consensus 206 ~~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKA---LfRrg~~~~~~~~~~ 256 (319)
.++..+.++..|+..|+.+|+.+| ++..| +|-+|-.+..++.++
T Consensus 83 ~AL~~lGryeEAIa~f~rALeL~P-------d~aeA~~A~yNLAcaya~LGr~d 129 (453)
T PLN03098 83 LSLFSKGRVKDALAQFETALELNP-------NPDEAQAAYYNKACCHAYREEGK 129 (453)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC-------CchHHHHHHHHHHHHHHHcCCHH
Confidence 355677899999999999999998 88865 999999777776665
No 85
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=44.09 E-value=16 Score=25.28 Aligned_cols=29 Identities=14% Similarity=-0.085 Sum_probs=23.0
Q ss_pred HHHHhcccchhHhHHhhhhccccccccCCCCChhHH
Q psy5048 207 AYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAW 242 (319)
Q Consensus 207 ~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKAL 242 (319)
+.-++..+..|...|..+|+.+| +|--|.
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~~eP-------~N~Qa~ 38 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLEIEP-------DNRQAQ 38 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHTT-------S-HHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhhCC-------CcHHHH
Confidence 34678999999999999999999 887664
No 86
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=43.73 E-value=33 Score=38.48 Aligned_cols=60 Identities=5% Similarity=-0.200 Sum_probs=49.2
Q ss_pred HHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHH
Q psy5048 209 ALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRA 275 (319)
Q Consensus 209 ~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~ 275 (319)
....++..|+..+..++..+| +|.-|++..|..+...++++ |++++|.|..+...|..+-
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P-------~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDN-------TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 455778889999999999998 99999999999776667765 8999999988776665553
No 87
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=42.89 E-value=61 Score=35.50 Aligned_cols=71 Identities=10% Similarity=-0.107 Sum_probs=49.9
Q ss_pred cccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHhHhHH
Q psy5048 212 VKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQRGHMI 283 (319)
Q Consensus 212 ~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k~~~~ 283 (319)
.+|......|..+++.. +|--|||..|..+..++.+. ++++||+|..|.+-|.-.=... ..+
T Consensus 97 ~~~~~ve~~~~~i~~~~--------~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~ 166 (906)
T PRK14720 97 LKWAIVEHICDKILLYG--------ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKE 166 (906)
T ss_pred cchhHHHHHHHHHHhhh--------hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHH
Confidence 45655677788887744 67789999999887777665 9999999998877766544444 344
Q ss_pred HHHHHHHhc
Q psy5048 284 TQGSLYFFL 292 (319)
Q Consensus 284 kek~~y~~m 292 (319)
+-..+|.+-
T Consensus 167 KA~~m~~KA 175 (906)
T PRK14720 167 KAITYLKKA 175 (906)
T ss_pred HHHHHHHHH
Confidence 444455443
No 88
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=41.32 E-value=63 Score=22.09 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=26.6
Q ss_pred cccCCCChhhHHHHHHHHHHHHhHhHHHHHHHHHhc
Q psy5048 257 QYEFPPEQSQCLPLLGIRAQHQRGHMITQGSLYFFL 292 (319)
Q Consensus 257 a~~~dP~n~~i~~el~~l~~~~k~~~~kek~~y~~m 292 (319)
+++.+|.+.++...|..+-..+....+-. ..|..+
T Consensus 23 ~l~~~P~~~~a~~~lg~~~~~~g~~~~A~-~~~~~a 57 (65)
T PF13432_consen 23 ALKQDPDNPEAWYLLGRILYQQGRYDEAL-AYYERA 57 (65)
T ss_dssp HHCCSTTHHHHHHHHHHHHHHTT-HHHHH-HHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence 89999999999999999988766655544 555544
No 89
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=40.74 E-value=1e+02 Score=32.02 Aligned_cols=80 Identities=5% Similarity=-0.194 Sum_probs=53.4
Q ss_pred HHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHh
Q psy5048 208 YALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQR 279 (319)
Q Consensus 208 ~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k 279 (319)
.....++..++......++.+| +|+.+++..|..+...+++. +++.+|++..+..-|..+-....
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKTHP-------NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 3445666777777777777777 88999998888666566664 67788888777666655554444
Q ss_pred HhHHHHHHHHHhcccCC
Q psy5048 280 GHMITQGSLYFFLFYNM 296 (319)
Q Consensus 280 ~~~~kek~~y~~mF~~~ 296 (319)
. .+-..+|..++...
T Consensus 819 ~--~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 819 D--PRALEYAEKALKLA 833 (899)
T ss_pred c--HHHHHHHHHHHhhC
Confidence 3 33445555555543
No 90
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=40.46 E-value=1.1e+02 Score=34.54 Aligned_cols=82 Identities=5% Similarity=-0.195 Sum_probs=59.4
Q ss_pred HHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHH
Q psy5048 207 AYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQ 278 (319)
Q Consensus 207 ~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~ 278 (319)
++.....+..|+..+..+++.+| +|+.|++..|..+...+++. +++.+|++..+...+..+-...
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~~P-------~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~ 684 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTREP-------GNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAAL 684 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhC
Confidence 33555788889999999999999 99999999999777667775 7778888887776666554432
Q ss_pred hHhHHHHHHHHHhcccCC
Q psy5048 279 RGHMITQGSLYFFLFYNM 296 (319)
Q Consensus 279 k~~~~kek~~y~~mF~~~ 296 (319)
...++-...|..+....
T Consensus 685 -g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 685 -GDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred -CCHHHHHHHHHHHhhhC
Confidence 33344445666666543
No 91
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=40.14 E-value=72 Score=33.93 Aligned_cols=79 Identities=4% Similarity=-0.138 Sum_probs=64.0
Q ss_pred HHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHh
Q psy5048 208 YALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQR 279 (319)
Q Consensus 208 ~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k 279 (319)
.+-+..+..+..+-..+++..| +|+.|..=+++.+....-++ ++..+|+|.++...+..+=+++-
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~P-------d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRFP-------DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhCC-------CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Confidence 3556888999999999999999 99999999999777665554 99999999999999988888877
Q ss_pred HhHHHHHHHHHhccc
Q psy5048 280 GHMITQGSLYFFLFY 294 (319)
Q Consensus 280 ~~~~kek~~y~~mF~ 294 (319)
++.+-+ .+|.....
T Consensus 169 ~~~~A~-~~y~~~~~ 182 (694)
T PRK15179 169 QSEQAD-ACFERLSR 182 (694)
T ss_pred chHHHH-HHHHHHHh
Confidence 765544 45665554
No 92
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=39.96 E-value=91 Score=28.86 Aligned_cols=77 Identities=8% Similarity=-0.167 Sum_probs=50.6
Q ss_pred hcccchhHhHHhhhhccccccccCCCCC---hhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHh
Q psy5048 211 LVKKTPSIHNCFLLSTKSMLTFARNQST---IPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQR 279 (319)
Q Consensus 211 ~~~~~~a~~~c~~vl~~~~l~~~~~~~N---vKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k 279 (319)
...+..++..+..++...| ++ .-|+|..|+.+...+++. ++...|++.-+-.-|-++...+.
T Consensus 156 ~~~y~~Ai~af~~fl~~yP-------~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~ 228 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYP-------DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ 228 (263)
T ss_pred cCCHHHHHHHHHHHHHHCc-------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH
Confidence 4678889999999999888 66 469999999666667775 66777886544444444433332
Q ss_pred --HhHHHHHHHHHhccc
Q psy5048 280 --GHMITQGSLYFFLFY 294 (319)
Q Consensus 280 --~~~~kek~~y~~mF~ 294 (319)
....+-++.|..+-.
T Consensus 229 ~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 229 DKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 233444455554444
No 93
>KOG0547|consensus
Probab=39.87 E-value=63 Score=32.93 Aligned_cols=57 Identities=11% Similarity=-0.007 Sum_probs=39.6
Q ss_pred cccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHH
Q psy5048 212 VKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRA 275 (319)
Q Consensus 212 ~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~ 275 (319)
..-.+.++.-+.....|| .|.--+|.|||-...+.+|+ +..+||+|.-...+|--+.
T Consensus 374 ~~~~~~~~~F~~A~~ldp-------~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~ 438 (606)
T KOG0547|consen 374 NQSEKMWKDFNKAEDLDP-------ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCAL 438 (606)
T ss_pred hccHHHHHHHHHHHhcCC-------CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH
Confidence 344445666777777777 99999999999444444443 9999999966555554433
No 94
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=39.69 E-value=22 Score=19.19 Aligned_cols=17 Identities=12% Similarity=-0.211 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHhcCccc
Q psy5048 240 PAWTHDYTRLALLLPFL 256 (319)
Q Consensus 240 KALfRrg~~~~~~~~~~ 256 (319)
.+++++|..+..+++++
T Consensus 2 ~~~~~~a~~~~~~~~~~ 18 (34)
T smart00028 2 EALYNLGNAYLKLGDYD 18 (34)
T ss_pred hHHHHHHHHHHHHhhHH
Confidence 46777777555555554
No 95
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=39.25 E-value=63 Score=34.53 Aligned_cols=61 Identities=8% Similarity=-0.138 Sum_probs=48.6
Q ss_pred HHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHH
Q psy5048 207 AYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIR 274 (319)
Q Consensus 207 ~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l 274 (319)
++........|+..+..++..+| +|..++|-+|..+...+++. +++.+|+|..+...=+.+
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~P-------d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEP-------RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCC-------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33455778889999999999999 99999999999666667775 888999999776554433
No 96
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=37.92 E-value=1.4e+02 Score=25.98 Aligned_cols=81 Identities=10% Similarity=-0.085 Sum_probs=54.8
Q ss_pred HHHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHH-HHHhcCcc-----c-------------cccCCCCh--
Q psy5048 206 SAYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYT-RLALLLPF-----L-------------QYEFPPEQ-- 264 (319)
Q Consensus 206 ~~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~-~~~~~~~~-----~-------------a~~~dP~n-- 264 (319)
.+.-....+..|+......+...| ..+...-|+|++|. .+..+... + .++.-|+.
T Consensus 50 ~a~y~~~~y~~A~~~~~~fi~~yP----~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y 125 (203)
T PF13525_consen 50 YAYYKQGDYEEAIAAYERFIKLYP----NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY 125 (203)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHH-T----T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC----CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH
Confidence 355667889999999999999887 22234459999999 44433222 1 55667774
Q ss_pred -hhHHHHHHHHHHHHhHhHHHHHHHHH
Q psy5048 265 -SQCLPLLGIRAQHQRGHMITQGSLYF 290 (319)
Q Consensus 265 -~~i~~el~~l~~~~k~~~~kek~~y~ 290 (319)
.+++.-|..|.+++.++.-.-+++|-
T Consensus 126 ~~~A~~~l~~l~~~la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 126 AEEAKKRLAELRNRLAEHELYIARFYY 152 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888888887777777765
No 97
>PRK14574 hmsH outer membrane protein; Provisional
Probab=37.89 E-value=82 Score=34.21 Aligned_cols=83 Identities=6% Similarity=-0.272 Sum_probs=54.8
Q ss_pred HHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHhH
Q psy5048 209 ALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQRG 280 (319)
Q Consensus 209 ~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k~ 280 (319)
.....+..|+..+.++++.+| +|.-+|+--++.+......+ +...+|.+... ..+..+... ..
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP-------~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~-~~ 183 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDP-------TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA-TD 183 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh-cc
Confidence 445788889999999999999 99888875445555444443 66678887666 444444433 23
Q ss_pred hHHHHHHHHHhcccCCCCCC
Q psy5048 281 HMITQGSLYFFLFYNMSSPL 300 (319)
Q Consensus 281 ~~~kek~~y~~mF~~~~~~~ 300 (319)
...+.-..|..|+..-+...
T Consensus 184 ~~~~AL~~~ekll~~~P~n~ 203 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSE 203 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCH
Confidence 33337777888887655443
No 98
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=37.45 E-value=75 Score=30.04 Aligned_cols=97 Identities=12% Similarity=-0.051 Sum_probs=47.5
Q ss_pred HHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHH
Q psy5048 207 AYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQ 278 (319)
Q Consensus 207 ~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~ 278 (319)
++....++..++.....++...| ++..+ ...|..+...+.++ +++.+|++..++..+...-...
T Consensus 258 ~~~~~g~~~~A~~~l~~~~~~~p-------~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 258 CYQALGDEAEGLEFLRRALEEYP-------GADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-------CchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhcc
Confidence 33444566666666666666555 54333 44455443334443 6667787776664443322111
Q ss_pred -hHhHHHHHHHHHhcccCCCCCCchhhhhhcccCCCC
Q psy5048 279 -RGHMITQGSLYFFLFYNMSSPLNKVNAYLCSESEHN 314 (319)
Q Consensus 279 -k~~~~kek~~y~~mF~~~~~~~~~~~~~~~~~~~~~ 314 (319)
.....+.-.++..|.....++.+- |+|+...|-
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~---~~c~~cg~~ 363 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPR---YRCRNCGFT 363 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCC---EECCCCCCC
Confidence 112223333455555433333332 777755543
No 99
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=36.48 E-value=68 Score=21.75 Aligned_cols=42 Identities=14% Similarity=-0.037 Sum_probs=31.7
Q ss_pred HHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCcc
Q psy5048 207 AYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPF 255 (319)
Q Consensus 207 ~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~ 255 (319)
++.....+..++..+..++...+ .+..+++..|..+...+++
T Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 43 AYYKLGKYEEALEDYEKALELDP-------DNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC-------cchhHHHHHHHHHHHHHhH
Confidence 44555778889999999998877 7888888888855544444
No 100
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=36.35 E-value=61 Score=20.74 Aligned_cols=34 Identities=15% Similarity=-0.020 Sum_probs=28.9
Q ss_pred HHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHH
Q psy5048 207 AYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYT 247 (319)
Q Consensus 207 ~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~ 247 (319)
++..+.++..++.....++..+| +|.-|+++-|+
T Consensus 10 ~~~~~G~~~~A~~~~~~~l~~~P-------~~~~a~~~La~ 43 (44)
T PF13428_consen 10 AYRRLGQPDEAERLLRRALALDP-------DDPEAWRALAQ 43 (44)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCc-------CCHHHHHHhhh
Confidence 34566888999999999999999 99999988664
No 101
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=34.74 E-value=19 Score=31.77 Aligned_cols=46 Identities=13% Similarity=-0.014 Sum_probs=31.7
Q ss_pred cchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc------------------cccCCCChhh
Q psy5048 214 KTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL------------------QYEFPPEQSQ 266 (319)
Q Consensus 214 ~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~------------------a~~~dP~n~~ 266 (319)
+..+++.+......+| .++-+|+|-|-++..+..+- |+.++|+..+
T Consensus 7 FE~ark~aea~y~~nP-------~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd 70 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP-------LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD 70 (186)
T ss_dssp HHHHHHHHHHHHHH-T-------T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHHhCc-------HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH
Confidence 5556777777777777 89999999999776664441 9999999654
No 102
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=33.46 E-value=44 Score=24.46 Aligned_cols=63 Identities=8% Similarity=-0.136 Sum_probs=39.7
Q ss_pred cccchhHhHHhhhhccccccccCCCC--ChhHHHHHHHHHHhcCccc-------cccCCCChhhHHHHHHHHHHHHhHh
Q psy5048 212 VKKTPSIHNCFLLSTKSMLTFARNQS--TIPAWTHDYTRLALLLPFL-------QYEFPPEQSQCLPLLGIRAQHQRGH 281 (319)
Q Consensus 212 ~~~~~a~~~c~~vl~~~~l~~~~~~~--NvKALfRrg~~~~~~~~~~-------a~~~dP~n~~i~~el~~l~~~~k~~ 281 (319)
..+..|+..+.++++.+| . |-..+|..|+.+-..++|. -++.+|.+.++.-.+.++--++..+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~-------~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y 74 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDP-------TNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKY 74 (84)
T ss_dssp T-HHHHHHHHHHHHHHHC-------GTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-H
T ss_pred ccHHHHHHHHHHHHHHCC-------CChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCH
Confidence 346678888888888776 3 4567788888666667775 2456666666666655544444433
No 103
>KOG2076|consensus
Probab=32.78 E-value=1.2e+02 Score=32.87 Aligned_cols=70 Identities=9% Similarity=-0.070 Sum_probs=48.6
Q ss_pred HHHHHHHhhHHHHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhH
Q psy5048 196 ESEKLYAHCSSAYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQC 267 (319)
Q Consensus 196 ~~~~l~~~~~~~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i 267 (319)
++..+...+|.+... +....|..-|..|+.++| .|.-|+|=-|.-+...++-+ |..++|++++.
T Consensus 138 ~l~~ll~eAN~lfar-g~~eeA~~i~~EvIkqdp-------~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~ 209 (895)
T KOG2076|consen 138 ELRQLLGEANNLFAR-GDLEEAEEILMEVIKQDP-------RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL 209 (895)
T ss_pred HHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCc-------cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH
Confidence 345566566655444 888889999999999999 89999988888665554443 66777777644
Q ss_pred HHHHHH
Q psy5048 268 LPLLGI 273 (319)
Q Consensus 268 ~~el~~ 273 (319)
=.-+..
T Consensus 210 W~~lad 215 (895)
T KOG2076|consen 210 WKRLAD 215 (895)
T ss_pred HHHHHH
Confidence 333333
No 104
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=32.28 E-value=76 Score=24.71 Aligned_cols=31 Identities=3% Similarity=-0.146 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHHHHhHhHHHHHHHHHhccc
Q psy5048 264 QSQCLPLLGIRAQHQRGHMITQGSLYFFLFY 294 (319)
Q Consensus 264 n~~i~~el~~l~~~~k~~~~kek~~y~~mF~ 294 (319)
-.+|..++.+|+++.+....++...++.++-
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~Al 34 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIAL 34 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999887764
No 105
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=32.16 E-value=1.3e+02 Score=31.31 Aligned_cols=62 Identities=11% Similarity=-0.102 Sum_probs=42.9
Q ss_pred HHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHH
Q psy5048 209 ALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQH 277 (319)
Q Consensus 209 ~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~ 277 (319)
.....+..++..+..++..+| .+..+++.+|..+...++++ +++++|.+..+...+..+--.
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 239 (899)
T TIGR02917 170 LAENRFDEARALIDEVLTADP-------GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIE 239 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 334666677777777777776 78888888888655566665 677888877776666555433
No 106
>KOG1173|consensus
Probab=32.15 E-value=1.9e+02 Score=29.94 Aligned_cols=74 Identities=16% Similarity=-0.008 Sum_probs=57.5
Q ss_pred HHHHHHHhhHHHHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhH
Q psy5048 196 ESEKLYAHCSSAYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQC 267 (319)
Q Consensus 196 ~~~~l~~~~~~~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i 267 (319)
.|.-+..++--++-++.++..||..-.++|...| .|+-++---|--++.++.++ ||.++|+|--+
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-------k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-------KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-------CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence 3555555555577888999999999999999888 88888777777555566665 99999999888
Q ss_pred HHHHHHHHH
Q psy5048 268 LPLLGIRAQ 276 (319)
Q Consensus 268 ~~el~~l~~ 276 (319)
...|+..-+
T Consensus 526 ~~lL~~aie 534 (611)
T KOG1173|consen 526 SELLKLAIE 534 (611)
T ss_pred HHHHHHHHH
Confidence 888875443
No 107
>COG1278 CspC Cold shock proteins [Transcription]
Probab=31.04 E-value=1.3e+02 Score=22.07 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=29.4
Q ss_pred ceEEEEeecCcCC-CCCCCCcEEEEEEEEEEeCCcEEeeeccCCCCeEEeeCCC
Q psy5048 34 SLSLILPRRAENL-KPYVNVKICVSSFKPTFKLTLVAMRIHDRDQPFTFTLGVG 86 (319)
Q Consensus 34 lv~~~i~~~G~G~-~p~~~~~v~v~~y~~~l~dg~v~d~s~~~~~p~~f~lG~~ 86 (319)
.|.|..-..|-|- .|..|+.-+++||..--.+|- .+-..|+.++|.+..+
T Consensus 5 tVKwfn~~KGfGFI~p~~G~~DvFVH~Sai~~~g~---~~L~eGQ~V~f~~~~g 55 (67)
T COG1278 5 TVKWFNATKGFGFITPEDGGKDVFVHISAIQRAGF---RTLREGQKVEFEVEQG 55 (67)
T ss_pred eEEEeeCCCcceEcCCCCCCcCEEEEeeeeccCCC---cccCCCCEEEEEEecC
Confidence 4677777778884 677775444445877554441 2333455666666544
No 108
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=30.14 E-value=4.1e+02 Score=24.02 Aligned_cols=82 Identities=9% Similarity=-0.149 Sum_probs=56.5
Q ss_pred HHHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcC-----cc--------------------c-ccc
Q psy5048 206 SAYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLL-----PF--------------------L-QYE 259 (319)
Q Consensus 206 ~~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~-----~~--------------------~-a~~ 259 (319)
.++-...++..|+......+...| .+++.--|+|++|.....++ .+ . .++
T Consensus 77 ~ayy~~~~y~~A~~~~e~fi~~~P----~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~ 152 (243)
T PRK10866 77 YAYYKNADLPLAQAAIDRFIRLNP----THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR 152 (243)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCc----CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH
Confidence 355667889999999999999888 45566678999998432111 01 0 455
Q ss_pred CCCC---hhhHHHHHHHHHHHHhHhHHHHHHHHHh
Q psy5048 260 FPPE---QSQCLPLLGIRAQHQRGHMITQGSLYFF 291 (319)
Q Consensus 260 ~dP~---n~~i~~el~~l~~~~k~~~~kek~~y~~ 291 (319)
.-|+ -++++.-|..|..++.++.-.=+++|-+
T Consensus 153 ~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~ 187 (243)
T PRK10866 153 GYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK 187 (243)
T ss_pred HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666 3577777777777777777766666653
No 109
>KOG1126|consensus
Probab=29.70 E-value=92 Score=32.57 Aligned_cols=105 Identities=14% Similarity=0.006 Sum_probs=0.0
Q ss_pred CCcccccchHHHHHH-HHhhhhhcccCCcchhHHHHHHHhhHHHHHHhcccchhHhHHhhhhccccccccCCCCChhHHH
Q psy5048 165 GPMAKNREHIAHRAR-RDRGKRRIQSFKPHRAESEKLYAHCSSAYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWT 243 (319)
Q Consensus 165 Gn~~~~~~~~~~~~~-~~~~k~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALf 243 (319)
||-+..+++...++. .+.+.+....+ +-+-.|-.+-. .....+..|.+.=++.|..+| .|--|||
T Consensus 428 GNcfSLQkdh~~Aik~f~RAiQldp~f----aYayTLlGhE~---~~~ee~d~a~~~fr~Al~~~~-------rhYnAwY 493 (638)
T KOG1126|consen 428 GNCFSLQKDHDTAIKCFKRAIQLDPRF----AYAYTLLGHES---IATEEFDKAMKSFRKALGVDP-------RHYNAWY 493 (638)
T ss_pred cchhhhhhHHHHHHHHHHHhhccCCcc----chhhhhcCChh---hhhHHHHhHHHHHHhhhcCCc-------hhhHHHH
Q ss_pred HHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHHhHhHH
Q psy5048 244 HDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQRGHMI 283 (319)
Q Consensus 244 Rrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~k~~~~ 283 (319)
=.|+.+.-..-++ |++++|.|..+.-=+-....+.+...+
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDK 541 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhH
No 110
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=29.65 E-value=1.4e+02 Score=27.69 Aligned_cols=65 Identities=6% Similarity=-0.246 Sum_probs=47.3
Q ss_pred HHHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHH
Q psy5048 206 SAYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIR 274 (319)
Q Consensus 206 ~~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l 274 (319)
.++-....+..|+.....++...| ..+...-|||+.|..+..++++. +++..|+...+..-.++|
T Consensus 188 ~~y~~~g~~~~A~~~f~~vv~~yP----~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 188 QLNYNKGKKDDAAYYFASVVKNYP----KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC----CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 345667889999999999998776 33357889999999776666665 666777766655554444
No 111
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=29.45 E-value=94 Score=24.24 Aligned_cols=28 Identities=4% Similarity=-0.126 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHhHhHHHHHHHHHhc
Q psy5048 265 SQCLPLLGIRAQHQRGHMITQGSLYFFL 292 (319)
Q Consensus 265 ~~i~~el~~l~~~~k~~~~kek~~y~~m 292 (319)
.+|..|+.+|+++.++...+++..++.+
T Consensus 6 s~I~~eI~kLqe~lk~~e~keAERigRi 33 (98)
T PRK13848 6 SKIREEIAKLQEQLKQAETREAERIGRI 33 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999988754
No 112
>PF13133 DUF3949: Protein of unknown function (DUF3949)
Probab=28.46 E-value=46 Score=23.80 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=18.7
Q ss_pred HHHHHHHHhHhHHHHHHHHHhc
Q psy5048 271 LGIRAQHQRGHMITQGSLYFFL 292 (319)
Q Consensus 271 l~~l~~~~k~~~~kek~~y~~m 292 (319)
++.|+++.+.....|..+|.+|
T Consensus 9 i~~lke~~k~~g~sQ~e~Y~nM 30 (62)
T PF13133_consen 9 IKGLKEKRKRTGKSQEELYDNM 30 (62)
T ss_pred HHHHHHHHHHhCccHHHHHHhc
Confidence 5667788888889999999988
No 113
>PRK11906 transcriptional regulator; Provisional
Probab=28.29 E-value=94 Score=31.30 Aligned_cols=50 Identities=4% Similarity=-0.235 Sum_probs=39.4
Q ss_pred hHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHH
Q psy5048 217 SIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGI 273 (319)
Q Consensus 217 a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~ 273 (319)
+...+..+++.|+ .|..||++.|..+....++. |+.++|+..++.-.+.-
T Consensus 323 a~~~A~rAveld~-------~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~ 380 (458)
T PRK11906 323 ALELLDYVSDITT-------VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRAL 380 (458)
T ss_pred HHHHHHHHHhcCC-------CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHH
Confidence 6777788888888 99999999999666555554 99999998776655554
No 114
>COG5625 Predicted transcription regulator containing HTH domain [Transcription]
Probab=25.11 E-value=1.5e+02 Score=23.62 Aligned_cols=45 Identities=7% Similarity=0.129 Sum_probs=25.6
Q ss_pred CChhHHHHHHH-HHHh----cCccccccCCCC------hhhHHHHHHHHHHHHhHh
Q psy5048 237 STIPAWTHDYT-RLAL----LLPFLQYEFPPE------QSQCLPLLGIRAQHQRGH 281 (319)
Q Consensus 237 ~NvKALfRrg~-~~~~----~~~~~a~~~dP~------n~~i~~el~~l~~~~k~~ 281 (319)
..|++|||||- +... |..|......|- .+.|..++..|.+..+.+
T Consensus 55 ~~v~~l~rrGll~relvqkgWvGYiya~~~P~k~leei~~~i~keiEelEk~~k~e 110 (113)
T COG5625 55 AAVAVLLRRGLLARELVQKGWVGYIYATTPPPKPLEEIEEEIMKEIEELEKEFKNE 110 (113)
T ss_pred HHHHHHHHhhHHHHHHHhccceeeEecCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 68999999998 3222 555553333333 345555555555555443
No 115
>PRK14574 hmsH outer membrane protein; Provisional
Probab=24.32 E-value=2.1e+02 Score=31.22 Aligned_cols=54 Identities=7% Similarity=-0.074 Sum_probs=42.1
Q ss_pred HHhcccchhHhHHhhhhccccccccCCCCChhHHHHH--HHHHHhcCccc--------cccCCCChhhHHHHH
Q psy5048 209 ALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHD--YTRLALLLPFL--------QYEFPPEQSQCLPLL 271 (319)
Q Consensus 209 ~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRr--g~~~~~~~~~~--------a~~~dP~n~~i~~el 271 (319)
........|+.+|.+.+ +| .|.-++-++ |+.+...++|. +++.+|+|.++...|
T Consensus 79 ~~~G~~~~A~~~~eka~--~p-------~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL 142 (822)
T PRK14574 79 GWAGRDQEVIDVYERYQ--SS-------MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM 142 (822)
T ss_pred HHcCCcHHHHHHHHHhc--cC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 45588888999999998 55 677776677 45666566765 999999999999876
No 116
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=23.66 E-value=3.8e+02 Score=21.41 Aligned_cols=40 Identities=8% Similarity=-0.270 Sum_probs=28.0
Q ss_pred HHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCcc
Q psy5048 209 ALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPF 255 (319)
Q Consensus 209 ~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~ 255 (319)
.....+..++..|...+..+| -|..++...-+.+...+..
T Consensus 73 ~~~~~~~~a~~~~~~~l~~dP-------~~E~~~~~lm~~~~~~g~~ 112 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALDP-------YDEEAYRLLMRALAAQGRR 112 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHST-------T-HHHHHHHHHHHHHTT-H
T ss_pred HhccCHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHCcCH
Confidence 445778889999999999999 8888766666655555443
No 117
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=22.06 E-value=2.5e+02 Score=27.29 Aligned_cols=64 Identities=8% Similarity=-0.120 Sum_probs=43.7
Q ss_pred HHHhcccchhHhHHhhhhccccccccCCCCCh-hHHHHHHHHHHhcCccc--------cccCCCChhhHHHHHHHHHHHH
Q psy5048 208 YALLVKKTPSIHNCFLLSTKSMLTFARNQSTI-PAWTHDYTRLALLLPFL--------QYEFPPEQSQCLPLLGIRAQHQ 278 (319)
Q Consensus 208 ~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~Nv-KALfRrg~~~~~~~~~~--------a~~~dP~n~~i~~el~~l~~~~ 278 (319)
+.....+..+..++.++.+.+| +|. =...+.++.+...++++ +.+.+|+|..+...+..+-.+.
T Consensus 128 A~~~g~~~~A~~~l~~A~~~~~-------~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 128 AQQRGDEARANQHLERAAELAD-------NDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCC-------cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3566777888888888888777 764 33345566555556665 7788898887777766655444
No 118
>KOG0550|consensus
Probab=21.55 E-value=1.5e+02 Score=29.64 Aligned_cols=25 Identities=4% Similarity=0.037 Sum_probs=17.1
Q ss_pred CccccchhhhhhhhcCCcccccchH
Q psy5048 150 IPNKFLHWDRRFTQKGPMAKNREHI 174 (319)
Q Consensus 150 ~~eek~~~a~~~ke~Gn~~~~~~~~ 174 (319)
.+.+--..+...++.||.+++...|
T Consensus 41 ~~~~~~~~Ae~~k~~gn~~yk~k~Y 65 (486)
T KOG0550|consen 41 FSQEAAQQAEEAKEEGNAFYKQKTY 65 (486)
T ss_pred ccchHHHHHHHHHhhcchHHHHhhH
Confidence 3444455677788888877777777
No 119
>KOG1156|consensus
Probab=21.54 E-value=2.4e+02 Score=29.72 Aligned_cols=70 Identities=11% Similarity=-0.002 Sum_probs=44.1
Q ss_pred hcccchhHhHHhhhhccccccccCCCCChhHHHHHHH-HH-HhcCccc-cccCCCChhhHHHHHHHHHHHHhHhH
Q psy5048 211 LVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYT-RL-ALLLPFL-QYEFPPEQSQCLPLLGIRAQHQRGHM 282 (319)
Q Consensus 211 ~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~-~~-~~~~~~~-a~~~dP~n~~i~~el~~l~~~~k~~~ 282 (319)
+.+...|+..|..-+.-|+ .. -==-+|=+|+-|.. -+ ....-|. |+.++|+|..|-+-|..|+.+++++.
T Consensus 54 lg~~~ea~~~vr~glr~d~-~S-~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDL-KS-HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred ccchHHHHHHHHHHhccCc-cc-chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence 3666778888888887554 00 00013444444433 21 1122222 99999999999999999998888764
No 120
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=21.54 E-value=2e+02 Score=23.93 Aligned_cols=70 Identities=9% Similarity=-0.114 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHhcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHH-------hcCccc---------------c
Q psy5048 200 LYAHCSSAYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLA-------LLLPFL---------------Q 257 (319)
Q Consensus 200 l~~~~~~~~~~~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~-------~~~~~~---------------a 257 (319)
...++-.++.....+..|+..|..++..+| .+.-+++.+|..+. .++++. +
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-------~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALERNP-------FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA 146 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Q ss_pred ccCCCChhhHHHH-HHHHHH
Q psy5048 258 YEFPPEQSQCLPL-LGIRAQ 276 (319)
Q Consensus 258 ~~~dP~n~~i~~e-l~~l~~ 276 (319)
+..+|.+..-..+ |+.+.+
T Consensus 147 ~~~~p~~~~~~~~~~~~~~~ 166 (168)
T CHL00033 147 IALAPGNYIEAQNWLKITGR 166 (168)
T ss_pred HHhCcccHHHHHHHHHHhcC
No 121
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=20.67 E-value=4.1e+02 Score=24.90 Aligned_cols=38 Identities=3% Similarity=-0.353 Sum_probs=20.1
Q ss_pred hcccchhHhHHhhhhccccccccCCCCChhHHHHHHHHHHhcCcc
Q psy5048 211 LVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWTHDYTRLALLLPF 255 (319)
Q Consensus 211 ~~~~~~a~~~c~~vl~~~~l~~~~~~~NvKALfRrg~~~~~~~~~ 255 (319)
...+..++..+...++.+| +++.+++..|..+...+.+
T Consensus 193 ~~~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~ 230 (389)
T PRK11788 193 RGDLDAARALLKKALAADP-------QCVRASILLGDLALAQGDY 230 (389)
T ss_pred CCCHHHHHHHHHHHHhHCc-------CCHHHHHHHHHHHHHCCCH
Confidence 3445555666666555555 5555555555544333443
No 122
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=20.37 E-value=1.8e+02 Score=29.39 Aligned_cols=35 Identities=11% Similarity=-0.061 Sum_probs=29.9
Q ss_pred CCCCChhHHHHHHHHHHhcCccc--------cccCCCChhhHH
Q psy5048 234 RNQSTIPAWTHDYTRLALLLPFL--------QYEFPPEQSQCL 268 (319)
Q Consensus 234 ~~~~NvKALfRrg~~~~~~~~~~--------a~~~dP~n~~i~ 268 (319)
.++++.-|++-+|.++..++.|+ |++++|++.+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~ 112 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQ 112 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Confidence 46699999999999888888886 899999987653
Done!