RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5048
(319 letters)
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase,
polymorphism, rotamase, structural genomics, structural
genomics consortium, SGC; 1.80A {Homo sapiens}
Length = 102
Score = 119 bits (301), Expect = 4e-34
Identities = 37/55 (67%), Positives = 41/55 (74%)
Query: 73 HDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
++QPF F+LG GQVIKGWDQGL MC GEKRKL IP L YG+RGA IPGG
Sbjct: 30 LPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPGG 84
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5;
2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A*
3ni6_A 3pa7_A
Length = 129
Score = 118 bits (297), Expect = 3e-33
Identities = 25/55 (45%), Positives = 30/55 (54%)
Query: 73 HDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
DR+ PF F L G+VIKGWD ++ M EK + I YGD G G IPG
Sbjct: 59 FDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGN 113
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A
3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Length = 128
Score = 115 bits (291), Expect = 2e-32
Identities = 27/55 (49%), Positives = 32/55 (58%)
Query: 73 HDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
HDR++PF F+LG GQVIK WD G+ M GE L P AYG G+ IP
Sbjct: 59 HDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSN 113
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET:
SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A
2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Length = 133
Score = 115 bits (290), Expect = 4e-32
Identities = 34/54 (62%), Positives = 38/54 (70%)
Query: 74 DRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
DR+ PF F LG G VIKGWD+G+ M VG R+LTIPP L YG RGAG VIP
Sbjct: 68 DRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPN 121
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura
genomics, seattle structural genomics center for
infectious; NMR {Giardia lamblia}
Length = 130
Score = 115 bits (290), Expect = 4e-32
Identities = 32/55 (58%), Positives = 37/55 (67%)
Query: 73 HDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
R +PF FTLG G+VIKGWDQG+ M +GEK TIP LAYG+RG VIP
Sbjct: 64 RSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYPPVIPPK 118
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae}
SCOP: d.26.1.1
Length = 113
Score = 114 bits (288), Expect = 4e-32
Identities = 30/55 (54%), Positives = 36/55 (65%)
Query: 73 HDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
DR PF +GVGQVIKGWD G+ ++ VGEK +LTIP AYG RG +IP
Sbjct: 46 VDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPN 100
>2ppn_A FK506-binding protein 1A; high resolution protein structure,
isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB:
1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A*
1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A*
1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Length = 107
Score = 114 bits (288), Expect = 4e-32
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 73 HDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
DR++PF F LG +VI+GW++G+ +M VG++ KLTI P AYG G +IP
Sbjct: 40 RDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPH 94
>1r9h_A FKB-6, FK506 binding protein family; structural genomics,
peptidylprolyl isomerase, PSI, protein structure
initiative; 1.80A {Caenorhabditis elegans} SCOP:
d.26.1.1
Length = 135
Score = 114 bits (288), Expect = 8e-32
Identities = 27/55 (49%), Positives = 31/55 (56%)
Query: 73 HDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
DR F+F LG G VIKGWD G+ M GE + TI YGD G+ IPGG
Sbjct: 54 RDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGG 108
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
1.60A {Homo sapiens} PDB: 3o5f_A
Length = 144
Score = 114 bits (288), Expect = 1e-31
Identities = 27/55 (49%), Positives = 32/55 (58%)
Query: 73 HDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
HDR++PF F+LG GQVIK WD G+ M GE L P AYG G+ IP
Sbjct: 75 HDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSN 129
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics,
structural genomics consortium, SGC, PE prolyl CIS-trans
isomerase; 1.82A {Homo sapiens}
Length = 125
Score = 113 bits (286), Expect = 1e-31
Identities = 34/57 (59%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 71 RIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
H+ QP FTLG+ + +KGWDQGL MCVGEKRKL IPPAL YG G G IP
Sbjct: 54 HKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGKGK-IPPE 109
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 116 bits (292), Expect = 2e-31
Identities = 33/53 (62%), Positives = 37/53 (69%)
Query: 74 DRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPG 126
DR+ PF F LG G VIKGWD+G+ M VG R+LTIPP L YG RGA VIP
Sbjct: 144 DRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPP 196
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat,
williams-beuren syndrome, structural genomics
consortium, SGC; 2.10A {Homo sapiens}
Length = 134
Score = 112 bits (282), Expect = 6e-31
Identities = 17/54 (31%), Positives = 22/54 (40%)
Query: 73 HDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPG 126
+ R P LG + G + GL M GE + P AYG G +IP
Sbjct: 66 YFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPP 119
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor,
SHH signalling antagonist, structural genomics
consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Length = 118
Score = 109 bits (274), Expect = 6e-30
Identities = 17/54 (31%), Positives = 22/54 (40%)
Query: 74 DRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
+ FTLG VI+ D + M VGE +T YG +G IP
Sbjct: 51 QEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPH 104
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein,
phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP:
d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Length = 280
Score = 113 bits (283), Expect = 1e-29
Identities = 24/55 (43%), Positives = 29/55 (52%)
Query: 73 HDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
DR F+F LG G+VIK WD + M VGE +T P AYG G+ IP
Sbjct: 91 LDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPN 145
Score = 85.3 bits (211), Expect = 2e-19
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 78 PFTFTLGVGQVIK---GWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNV-IPGG 127
F +G G+ + G ++ + M GE + + P+ A+G G IP
Sbjct: 207 ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPN 260
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain
five-stranded anti-parallel beta-sheet alpha-helix
crossing THis sheet; 2.08A {Triticum aestivum} PDB:
3jym_A
Length = 356
Score = 113 bits (284), Expect = 4e-29
Identities = 31/55 (56%), Positives = 34/55 (61%)
Query: 73 HDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
DRD F F LG GQVIKGWDQG+ M GE TIPP LAYG+ G+ IP
Sbjct: 51 RDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPAN 105
Score = 103 bits (258), Expect = 2e-25
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 73 HDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGN--VIPGG 127
HD +PF F VI+G D+ + M GE +TIPP AYG + ++P
Sbjct: 285 HDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPN 341
Score = 91.8 bits (228), Expect = 2e-21
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 74 DRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRG-----AGNVIPG 126
+ + FT+ G + + + M GEK L + P +G+ G G +P
Sbjct: 164 SKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPP 221
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus,
phosphoprotein, R isomerase-inhibitor complex; HET: RAP;
1.95A {Mus musculus} PDB: 1pbk_A*
Length = 119
Score = 105 bits (264), Expect = 2e-28
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 73 HDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRG-AGNVIPGG 127
+P +F +GVG+VI+GWD+ L M GEK +L I P AYG +G IP
Sbjct: 51 KKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPN 106
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506
binding protein; 1.85A {Arabidopsis thaliana} SCOP:
d.26.1.1 PDB: 1y0o_A
Length = 129
Score = 104 bits (262), Expect = 5e-28
Identities = 34/65 (52%), Positives = 40/65 (61%), Gaps = 11/65 (16%)
Query: 74 DRDQPFTFTLGVGQVIKGWDQGLT------EMCVGEKRKLTIPPALAYGDRGAG-----N 122
+R +P TF +GVG+VIKGWDQG+ M G KR L IPP LAYGDRGAG
Sbjct: 52 NRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSC 111
Query: 123 VIPGG 127
+IP
Sbjct: 112 LIPPA 116
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 135
Score = 102 bits (257), Expect = 3e-27
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 74 DRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGN-VIPGG 127
+ FTLG VI+ D + M VGE +T YG +G+ + IP
Sbjct: 55 QEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPH 109
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel,
central helix, with flexible N-terminal extension,
isomerase; NMR {Homo sapiens}
Length = 157
Score = 101 bits (254), Expect = 1e-26
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 74 DRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGA-GNVIPGG 127
+ FTLG VI+ D + M VGE +T YG +G+ IP
Sbjct: 81 QEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPH 135
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A
{Arabidopsis thaliana}
Length = 180
Score = 98.0 bits (244), Expect = 6e-25
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 73 HDRDQPFTFTLGV-GQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNV--IPG 126
QP LG + + G G+ M GE+ + + LAYG G + +P
Sbjct: 89 WHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPP 145
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase,
isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Length = 167
Score = 92.4 bits (230), Expect = 6e-23
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 74 DRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
+R +P TF +VIKGW + L M G++ +L IP LAYG G G +IP
Sbjct: 78 ERGKPTTF--RPNEVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPY 129
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain,
long alpha helix, dimerisation VIA helical INTE
isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1
PDB: 2uz5_A 2vcd_A*
Length = 213
Score = 88.2 bits (219), Expect = 5e-21
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 73 HDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
+P TF V QVI GW + L M G ++ +P LAYG R G I
Sbjct: 145 EKTGKPATF--QVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPN 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 91.7 bits (227), Expect = 6e-21
Identities = 27/55 (49%), Positives = 32/55 (58%)
Query: 73 HDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
HDR++PF F+LG GQVIK WD G+ M GE L P AYG G+ IP
Sbjct: 71 HDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPKIPSN 125
Score = 71.2 bits (174), Expect = 6e-14
Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 23/124 (18%)
Query: 76 DQPFTFTLGVGQ---VIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNV-IPGGLSAV 131
+ FT+G G+ + G D+ L +M E+ L + P +G+ G I
Sbjct: 183 CRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIE------ 236
Query: 132 RQSEHSELEISTKFFLELIPNKFLHWDRRFTQKGPMAKNREHIAHRARRDRGKRRIQSFK 191
++EL L + + M + +++G + K
Sbjct: 237 ---PNAELIYEVT----------LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK 283
Query: 192 PHRA 195
+A
Sbjct: 284 YMQA 287
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 85.5 bits (212), Expect = 6e-20
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 77 QPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
QP F + VI GW L M G K +L IP AYG GAG++I
Sbjct: 157 QPQWF--RLDSVISGWTSALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPF 205
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone,
peptidyl-prolyl isomerase, heat shock protein, FK
family; HET: MSE; 1.97A {Escherichia coli} SCOP:
d.26.1.1 PDB: 1q6i_A* 1q6u_A
Length = 224
Score = 81.7 bits (202), Expect = 2e-18
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 74 DRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPG 126
R +P +F + VI GW +GL + G K KL IPP LAYG G + P
Sbjct: 161 TRGEPLSF--RLDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPGIPPN 211
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 68.9 bits (168), Expect = 2e-13
Identities = 22/126 (17%), Positives = 36/126 (28%), Gaps = 19/126 (15%)
Query: 73 HDRDQPFTFTLGV-GQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAG--NVIPGGLS 129
QP LG + + G G+ M GE+ + + LAYG G +P
Sbjct: 89 WHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVP---- 144
Query: 130 AVRQSEHSELEISTKFFLELIPNKFLHWDRRFTQKGPMAKNREHIAHRARRDRGKRRIQS 189
++L + + + M A R+ G +
Sbjct: 145 -----PMADLLYE-------VEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKE 192
Query: 190 FKPHRA 195
K A
Sbjct: 193 EKLEEA 198
>1ix5_A FKBP; ppiase, isomerase; NMR
{Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Length = 151
Score = 64.3 bits (157), Expect = 7e-13
Identities = 16/47 (34%), Positives = 31/47 (65%)
Query: 77 QPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNV 123
+P F +G GQ+I+G+++ + +M VG+++ + IP AYG+R +
Sbjct: 43 EPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAYGNRNEMLI 89
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF
domain, chaperone, peptidyl-prolyl isomerase isomerase;
1.35A {Escherichia coli}
Length = 169
Score = 62.3 bits (152), Expect = 5e-12
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 74 DRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNV 123
+ +P F LG + +G +Q L + VG+K ++ P A+G +
Sbjct: 50 NNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDLI 99
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein,
rotamase; NMR {Helicobacter pylori}
Length = 151
Score = 61.1 bits (149), Expect = 9e-12
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 73 HDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNV 123
+ +P F +G Q+I G ++ + + +GE ++ I P AYG + +
Sbjct: 31 NISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYESSYL 81
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein,
chaperone; 1.95A {Methanocaldococcus jannaschii} PDB:
3pra_A
Length = 157
Score = 60.1 bits (146), Expect = 3e-11
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 76 DQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNV 123
P G GQV+ G D+ + EM VGE+R++ +PP A+G R +
Sbjct: 41 YGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAFGKRDPSKI 88
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A
{Methanocaldococcus jannaschii} PDB: 3prd_A
Length = 231
Score = 60.6 bits (147), Expect = 5e-11
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 76 DQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNV 123
P G GQV+ G D+ + EM VGE+R++ +PP A+G R +
Sbjct: 41 YGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAFGKRDPSKI 88
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone,
rotamase; NMR {Escherichia coli}
Length = 171
Score = 59.6 bits (145), Expect = 5e-11
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 76 DQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVI 124
P + G G +I G + L VG+K + + AYG V
Sbjct: 29 SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENLVQ 77
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein,
cobalt, copper, cytoplasm, metal- binding, nickel,
rotamase, zinc; NMR {Escherichia coli}
Length = 196
Score = 59.7 bits (145), Expect = 7e-11
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 76 DQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGGLSAVRQSE 135
P + G G +I G + L VG+K + + AYG V +
Sbjct: 29 SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVD 88
Query: 136 HSELEISTKFFLE 148
EL++ +F E
Sbjct: 89 --ELQVGMRFLAE 99
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two
domain P rotamase; 2.41A {Thermus thermophilus} PDB:
3cgn_A 3luo_A*
Length = 158
Score = 57.7 bits (140), Expect = 2e-10
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 76 DQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVI 124
++ G +I G ++ L GE + +P AYG V
Sbjct: 24 QGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 5e-10
Identities = 56/301 (18%), Positives = 98/301 (32%), Gaps = 94/301 (31%)
Query: 9 FGENRNPFYKTPCIRPRSTLSLSPYSLSLILPRRAENLKPYVNVKICVSSFKPTFKLTLV 68
+ E R+ Y + + Y++ R L+PY+ ++ + +P + +
Sbjct: 112 YIEQRDRLYNDNQV-------FAKYNV----SR----LQPYLKLRQALLELRPAKNVLID 156
Query: 69 AMRIHDRDQPFTFTLGVGQVIKGWDQGLT-EMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
+ LG G K W + ++C+ K + + + + +
Sbjct: 157 GV------------LGSG---KTW---VALDVCLSYKVQCKMDFKIFWLNLKN------- 191
Query: 128 LSAVRQSEHSELEISTKFFLELIPNKFLHWDRRFTQKGPMAKNREHIAHRARRDRGKRRI 187
S + LE+ K ++ PN +T + + N + H + RR+
Sbjct: 192 ----CNSPETVLEMLQKLLYQIDPN--------WTSRSDHSSNIKLRIHSI-QAE-LRRL 237
Query: 188 QSFKPHRAESEKLYAHCSSAYALLVK---KTPSIHNCFLLSTKSMLTFARNQSTI----- 239
KP Y +C LLV + N F LS K +LT R +
Sbjct: 238 LKSKP--------YENC-----LLVLLNVQNAKAWNAFNLSCKILLT-TRFKQVTDFLSA 283
Query: 240 ------------PAWTHDYTRLALLLPFLQYEF---PPEQSQCLPL-LGIRAQHQRGHMI 283
T D +LLL +L P E P L I A+ R +
Sbjct: 284 ATTTHISLDHHSMTLTPDEV-KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 284 T 284
T
Sbjct: 343 T 343
Score = 36.0 bits (82), Expect = 0.019
Identities = 48/304 (15%), Positives = 91/304 (29%), Gaps = 80/304 (26%)
Query: 24 PRSTLSLSPYSLSLI------LPRRAENLKPYVN-------VKICVSSFKPT-FKLTLVA 69
PR L+ +P LS+I +N K +VN ++ ++ +P ++
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWK-HVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 70 MRIHDRDQPFTFTLGVGQVIKGWDQGLTE-----MCVGEKRKLTI--PPALAYGDRGAGN 122
+ + + +I W + + K L P
Sbjct: 378 LSVFPPSAH--IPTILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS------ 427
Query: 123 VIPGGLSAVRQSEHSELEISTKFFLE--LIPNKFLHWDRRFTQKGPMAKNRE------HI 174
IP ++ +E + ++ IP F D + HI
Sbjct: 428 -IPSIYLELKVKLENEYALHRS-IVDHYNIPKTFDSDD--------LIPPYLDQYFYSHI 477
Query: 175 AHRARRDRGKRRIQSFKPHRAESEKLYAHCSSAYALLVKK-----TPSIHNCFLLSTKSM 229
H + R+ F ++ + L +K T + +L+T
Sbjct: 478 GHHLKNIEHPERMTLF-------RMVFLD----FRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 230 LTFARNQSTIPAWTHD--YTRL-ALLLPFL-QYEFPPEQSQCLPLLGIRAQHQRGHMITQ 285
L F + +D Y RL +L FL + E S+ LL + M
Sbjct: 527 LKFYKPYIC----DNDPKYERLVNAILDFLPKIEENLICSKYTDLL------RIALMAED 576
Query: 286 GSLY 289
+++
Sbjct: 577 EAIF 580
Score = 30.2 bits (67), Expect = 1.1
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 140 EISTKFFLELI-PN-KFLHWDR-RFTQKGPMAKNREHIAHRARRDRGKRRIQSFKPHRAE 196
E+ KF E++ N KFL + Q+ P R +I R DR Q F +
Sbjct: 77 EMVQKFVEEVLRINYKFL-MSPIKTEQRQPSMMTRMYIEQR---DRLYNDNQVFAKYNVS 132
Query: 197 SEKLY 201
+ Y
Sbjct: 133 RLQPY 137
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 48.7 bits (116), Expect = 9e-07
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 76 DQPFTFTLGVGQ---VIKGWDQGLTEMCVGEKRKLTIPPALAYGDRG 119
+ F +G G+ + G ++ + M GE + + P+ A+G G
Sbjct: 62 QRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVG 108
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.2 bits (90), Expect = 5e-04
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 188 QSFKPHRAESE-KLYAHCSSAYALLVKKT 215
Q+ K + ++ KLYA SA AL +K T
Sbjct: 20 QALK--KLQASLKLYAD-DSAPALAIKAT 45
Score = 28.8 bits (63), Expect = 1.6
Identities = 9/31 (29%), Positives = 10/31 (32%), Gaps = 12/31 (38%)
Query: 87 QVIKGWDQGLTEMCVGEKRKLTIP---PALA 114
Q +K L KL PALA
Sbjct: 20 QALKKLQASL---------KLYADDSAPALA 41
Score = 27.6 bits (60), Expect = 4.1
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 11/30 (36%)
Query: 247 TRLALLLPFLQYEFPPEQSQCLPLLGIRAQ 276
L L Y + + P L I+A
Sbjct: 27 ASLKL------YA--DDSA---PALAIKAT 45
>3clw_A Conserved exported protein; structural genomics, unknown function,
PSI-2, protein struct initiative; 2.20A {Bacteroides
fragilis}
Length = 507
Score = 33.1 bits (74), Expect = 0.11
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 51 NVKICVSSFKPTFKLTLVAMRIHDRDQPFTFTLGVGQVIKGW----DQGLTEMCVGEKRK 106
+ +SS+ ++ VA+ +Q + Q K + D+ L M +K
Sbjct: 424 ATSLMISSYTDGKEVVTVAINYSKENQVISLNCDHAQKGKVYLTTIDKNLRYMGEQPLKK 483
Query: 107 LTIPP 111
L +P
Sbjct: 484 LQLPA 488
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 1.1
Identities = 42/303 (13%), Positives = 74/303 (24%), Gaps = 119/303 (39%)
Query: 4 KLLLPF---GENRNPF------YKT--PCIRPRSTLSLSPYSLSLILPRRAENLKPYVNV 52
+L+ F G + F Y+T + ++ AE L +
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD-------------LIKFSAETLSELIR- 200
Query: 53 KICVSSFKPTFKLTLVAMR-IHDRDQ----------PFTFTLGVGQVIKGWDQGLTEMC- 100
+ F L + + + P + L I G+ ++
Sbjct: 201 --TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL-----I-----GVIQLAH 248
Query: 101 ---VGEKRKLTIPPALAYGDRGAGNVIPGGLSAV----RQSEHSELEISTK-----FFL- 147
+ T P L +GA G ++AV S S K FF+
Sbjct: 249 YVVTAKLLGFT-PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 148 ----ELIPNKFLH-------WDRRFTQKGPMAK----NREHIAHRARRDRGKRRIQSFKP 192
E PN L + PM +E + + +
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV---------QDYVNKTNS 358
Query: 193 HRAESEKLYA-------------HCSSAYALLV-------------------KKTPSIHN 220
H +++ S Y L + ++ N
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 221 CFL 223
FL
Sbjct: 419 RFL 421
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma
genitalium} SCOP: d.26.1.1
Length = 113
Score = 28.3 bits (64), Expect = 1.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 79 FTFTLGVGQVIKGWDQGLTEMCVGEKR--KLTIP 110
+ T+G IKG++ GL M V +K+ LT P
Sbjct: 57 YELTIGSNSFIKGFETGLIAMKVNQKKTLALTFP 90
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase,
chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1
d.241.2.1 d.26.1.1 PDB: 1l1p_A
Length = 392
Score = 29.5 bits (67), Expect = 1.6
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 79 FTFTLGVGQVIKGWDQGLTEMCVGEKRKLTI 109
F +G G++I G++ G+ G + + +
Sbjct: 188 FPLEMGAGRMIPGFEDGIVGKTKGMEFVIDV 218
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated
protein, nascent chain, cell division, isomerase; 2.7A
{Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1
PDB: 2vrh_A 1w2b_5
Length = 432
Score = 29.2 bits (66), Expect = 1.8
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 79 FTFTLGVGQVIKGWDQGLTEMCVGEKRKLTI 109
F +G G++I G++ G+ GE+ + +
Sbjct: 185 FVLAMGQGRMIPGFEDGIKGHKAGEEFTIDV 215
>2hkv_A Hypothetical protein; putative member of the DINB family,
structural genomics, JOI for structural genomics, JCSG;
1.70A {Exiguobacterium sibiricum} SCOP: a.213.1.2
Length = 149
Score = 27.7 bits (61), Expect = 2.8
Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 14/137 (10%)
Query: 127 GLSAVRQSEHSELEI---STKFFLELIPNKFLHWDRRFTQKGPMAKNREHIAHRARRDRG 183
G++ +Q+ + + +T+ + LI + WD+R E H A
Sbjct: 1 GMTDWQQALDRHVGVGVRTTRDLIRLIQPE--DWDKRPISG--KRSVYEVAVHLAVLLEA 56
Query: 184 KRRIQSFKPHRAESEKLYAHCSSAYALLVKKTPSIHNCFLLSTKSMLTFARNQSTIPAWT 243
RI + E + YA L+ + S A + W
Sbjct: 57 DLRIATGAT-ADEMAQFYAVPVLPEQLVDRLDQSWQYY------QDRLMADFSTETTYWG 109
Query: 244 HDYTRLALLLPFLQYEF 260
+ LL + +
Sbjct: 110 VTDSTTGWLLEAAVHLY 126
>3kl0_A Glucuronoxylanase XYNC; alpha beta barrel, (beta/alpha)8 barrel
(beta/alpha)8 + beta motif family, hydrolase; HET: TAR
HIS; 1.64A {Bacillus subtilis} PDB: 3gtn_A* 3kl3_A*
3kl5_A*
Length = 401
Score = 28.8 bits (63), Expect = 2.8
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 10/68 (14%)
Query: 54 ICVSSFKPTFKLTLVAMRIHDRDQPFTFTLGVGQV----------IKGWDQGLTEMCVGE 103
+ VS++K K+ +VA+ + F L G G G
Sbjct: 314 VYVSAYKGDNKVVIVAINKSNTGVNQNFVLQNGSASNVSRWITSSSSNLQPGTNLTVSGN 373
Query: 104 KRKLTIPP 111
+P
Sbjct: 374 HFWAHLPA 381
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous
recombination, tandem repeats, three-helix bundle,
cytoplasm; 1.50A {Xanthomonas campestris PV}
Length = 162
Score = 26.5 bits (59), Expect = 8.0
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 20/66 (30%)
Query: 135 EHSELEISTK----FFLELIPNKFLHW--------DRRFTQKGPMAKNREHIAHRARRDR 182
EHS+ E++ K + D RF + +RA
Sbjct: 31 EHSKKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFA--------ASVVRNRASSGY 82
Query: 183 GKRRIQ 188
G I+
Sbjct: 83 GPLHIR 88
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase;
1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Length = 273
Score = 27.0 bits (59), Expect = 8.5
Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 8/129 (6%)
Query: 134 SEHSELEISTKFFLELIPNKFLHWDRRFTQKGPMAKNREHIAHRARRDRGKRRIQSFKPH 193
E +LE K +E +++ W+ + A+ + +
Sbjct: 108 LEELKLEKKLKIRVEPGIFEWMKWEASKATLTFLTLEELKEANFNVDLDYRPALPRCSLM 167
Query: 194 RAES-EKLYAHCSSAYALLVKKTPSIHNCFLLST-----KSMLTFARNQSTIPAWTHDYT 247
AES ++ C+ + ++ P L+ + S P D+
Sbjct: 168 PAESYDQYVERCAVSMGQIINTCPQDMGITLIVSHSSALDSCTRPLLGLP--PRECGDFA 225
Query: 248 RLALLLPFL 256
+L +P L
Sbjct: 226 QLVRKIPSL 234
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.419
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,614,556
Number of extensions: 260298
Number of successful extensions: 414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 57
Length of query: 319
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 225
Effective length of database: 4,077,219
Effective search space: 917374275
Effective search space used: 917374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.7 bits)